BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040116
(298 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W6E|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 298
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 110/292 (37%), Positives = 171/292 (58%), Gaps = 49/292 (16%)
Query: 40 VRSIST-QIVRNRMKSVKNIQKITKAMKMVAASK-------LRAIQVKAENSRGLWQPFT 91
VR+++T + + R+KS+KNIQKITK+MKMVAA+K L+ +V S L++
Sbjct: 22 VRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKAD 81
Query: 92 ALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKS--------------------- 130
TP D KK++I+ +SSD+GLCG I+S+ K KS
Sbjct: 82 I---KTPE-DKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKI 137
Query: 131 ---LHKLNSDIELI-ITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSFL 185
LH+ +SD L+ E+ + P + SV+A ++L + EFD II+++F SV+S+
Sbjct: 138 RSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYK 197
Query: 186 PTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENA 245
+ S + + AES ++D+ ++L+N E+ + +++ ++ E+
Sbjct: 198 TEEKPIFSLDTIS-SAESMSIYDDIDA----------DVLRNYQEYSLANIIYYSLKEST 246
Query: 246 CSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 297
SEQ ARM+AMD++S+NA EM+D+LTLT+NRTRQA IT ELIEIISGA+AL+
Sbjct: 247 TSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD 298
>pdb|2JDI|G Chain G, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|4ASU|G Chain G, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 273
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 107/283 (37%), Positives = 164/283 (57%), Gaps = 48/283 (16%)
Query: 48 VRNRMKSVKNIQKITKAMKMVAASK-------LRAIQVKAENSRGLWQPFTALLGDTPTV 100
+ R+KS+KNIQKITK+MKMVAA+K L+ +V S L++ TP
Sbjct: 6 ITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADI---KTPE- 61
Query: 101 DAKKNVIVTISSDKGLCGGINSTAVKISKS------------------------LHKLNS 136
D KK++I+ +SSD+GLCG I+S+ K KS LH+ +S
Sbjct: 62 DKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHS 121
Query: 137 DIELI-ITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSFLPTMATVLSP 194
D L+ E+ + P + SV+A ++L + EFD II+++F SV+S+ + S
Sbjct: 122 DQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSL 181
Query: 195 ELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMS 254
+ + AES ++D+ ++L+N E+ + +++ ++ E+ SEQ ARM+
Sbjct: 182 DTIS-SAESMSIYDDIDA----------DVLRNYQEYSLANIIYYSLKESTTSEQSARMT 230
Query: 255 AMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 297
AMD++S+NA EM+D+LTLT+NRTRQA IT ELIEIISGA+AL+
Sbjct: 231 AMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD 273
>pdb|1COW|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|G Chain G, Bovine Mitochondrial F1-Atpase
pdb|1NBM|G Chain G, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1QO1|G Chain G, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|G Chain G, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|G Chain G, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|G Chain G, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|G Chain G, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|G Chain G, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1W0J|G Chain G, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|G Chain G, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|G Chain G, Azide Inhibited Bovine F1-Atpase
pdb|2JIZ|G Chain G, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|N Chain N, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|G Chain G, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|N Chain N, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|G Chain G, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|N Chain N, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|G Chain G, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|G Chain G, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|P Chain P, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2XND|G Chain G, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 272
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/282 (37%), Positives = 163/282 (57%), Gaps = 48/282 (17%)
Query: 48 VRNRMKSVKNIQKITKAMKMVAASK-------LRAIQVKAENSRGLWQPFTALLGDTPTV 100
+ R+KS+KNIQKITK+MKMVAA+K L+ +V S L++ TP
Sbjct: 6 ITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADI---KTPE- 61
Query: 101 DAKKNVIVTISSDKGLCGGINSTAVKISKS------------------------LHKLNS 136
D KK++I+ +SSD+GLCG I+S+ K KS LH+ +S
Sbjct: 62 DKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHS 121
Query: 137 DIELI-ITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSFLPTMATVLSP 194
D L+ E+ + P + SV+A ++L + EFD II+++F SV+S+ + S
Sbjct: 122 DQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSL 181
Query: 195 ELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMS 254
+ + AES ++D+ ++L+N E+ + +++ ++ E+ SEQ ARM+
Sbjct: 182 DTIS-SAESMSIYDDIDA----------DVLRNYQEYSLANIIYYSLKESTTSEQSARMT 230
Query: 255 AMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296
AMD++S+NA EM+D+LTLT+NRTRQA IT ELIEIISGA+AL
Sbjct: 231 AMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 272
>pdb|1MAB|G Chain G, Rat Liver F1-Atpase
Length = 270
Score = 157 bits (396), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 104/283 (36%), Positives = 163/283 (57%), Gaps = 48/283 (16%)
Query: 48 VRNRMKSVKNIQKITKAMKMVAASK-------LRAIQVKAENSRGLWQPFTALLGDTPTV 100
+ R+KS+KNIQKITK+MKMVAA+K L+ +V S L++ + G P
Sbjct: 3 ITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGTGSLALYEK-AEIKG--PE- 58
Query: 101 DAKKNVIVTISSDKGLCGGINSTAVK------------------------ISKSLHKLNS 136
D KK++I+ +SSD+GLCG I+S+ K I L++ +S
Sbjct: 59 DKKKHLIIGVSSDRGLCGAIHSSVAKQMKNDMAALTAAGKEVMIVGIGEKIKSILYRTHS 118
Query: 137 DIELI-ITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSFLPTMATVLSP 194
D L+ ++ + P + SV+A ++L + EFD II+++F SV+S+ + S
Sbjct: 119 DQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQFKSVISYKTEEKPIFSF 178
Query: 195 ELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMS 254
V AE+ ++D+ ++LQN E+ + +++ ++ E+ SEQ ARM+
Sbjct: 179 STV-VAAENMSIYDDIDA----------DVLQNYQEYNLANIIYYSLKESTTSEQSARMT 227
Query: 255 AMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 297
AMD++S+NA +M+D+LTLT+NRTRQA IT ELIEIISGA+AL+
Sbjct: 228 AMDNASKNASDMIDKLTLTFNRTRQAVITKELIEIISGAAALD 270
>pdb|2F43|G Chain G, Rat Liver F1-atpase
Length = 273
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/283 (36%), Positives = 163/283 (57%), Gaps = 48/283 (16%)
Query: 48 VRNRMKSVKNIQKITKAMKMVAASK-------LRAIQVKAENSRGLWQPFTALLGDTPTV 100
+ R+KS+KNIQKITK+MKMVAA+K L+ +V S L++ + G P
Sbjct: 6 ITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGTGSLALYEK-AEIKG--PE- 61
Query: 101 DAKKNVIVTISSDKGLCGGINSTAVK------------------------ISKSLHKLNS 136
D KK++I+ +SSD+GLCG I+S+ K I L++ +S
Sbjct: 62 DKKKHLIIGVSSDRGLCGAIHSSVAKQMKNDMAALTAAGKEVMIVGIGEKIKSILYRTHS 121
Query: 137 DIELI-ITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSFLPTMATVLSP 194
D L+ ++ + P + SV+A ++L + EFD II+++F SV+S+ + S
Sbjct: 122 DQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQFKSVISYKTEEKPIFSF 181
Query: 195 ELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMS 254
V AE+ ++D+ ++LQN E+ + +++ ++ E+ SEQ ARM+
Sbjct: 182 STV-VAAENMSIYDDIDA----------DVLQNYQEYNLANIIYYSLKESTTSEQSARMT 230
Query: 255 AMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 297
AMD++S+NA +M+D+LTLT+NRTRQA IT ELIEIISGA+AL+
Sbjct: 231 AMDNASKNASDMIDKLTLTFNRTRQAVITKELIEIISGAAALD 273
>pdb|2XOK|G Chain G, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 311
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 162/292 (55%), Gaps = 46/292 (15%)
Query: 40 VRSIST-QIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL---G 95
VR+ +T + V R+KS+KNI+KITK MK+VA+++L + KA+ S L
Sbjct: 30 VRTYATLKEVEMRLKSIKNIEKITKTMKIVASTRLSKAE-KAKISAKKMDEAEQLFYKNA 88
Query: 96 DTPTVD-------AKKNVIVTISSDKGLCGGINSTAVK-ISKSLH-KLNSDI-------- 138
+T +D A K +IV I+SDKGLCG I+S K + + L+ + N+DI
Sbjct: 89 ETKNLDVEATETGAPKELIVAITSDKGLCGSIHSQLAKAVRRHLNDQPNADIVTIGDKIK 148
Query: 139 -----------ELIITELQKNPLNYTQVSVLADDIL---KNVEFDALRIIYSKFHSVVSF 184
+L I + K+ + + +++AD +L K + + I Y+ S +SF
Sbjct: 149 MQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFYNDPVSSLSF 208
Query: 185 LPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLEN 244
P+ + + + +E ++ S GK +EI+ T + ++L E+ + M A+ +
Sbjct: 209 EPSEKPIFNAKTIE-QSPSFGK------FEID---TDANVPRDLFEYTLANQMLTAMAQG 258
Query: 245 ACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296
+E AR +AMD++S+NAG+M++R ++ YNRTRQA IT EL++II+GAS+L
Sbjct: 259 YAAEISARRNAMDNASKNAGDMINRYSILYNRTRQAVITNELVDIITGASSL 310
>pdb|2HLD|G Chain G, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|P Chain P, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|Y Chain Y, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|3FKS|G Chain G, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|P Chain P, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|Y Chain Y, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|2WPD|G Chain G, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3OEE|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|P Chain P, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|Y Chain Y, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEH|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|P Chain P, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|Y Chain Y, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OFN|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|P Chain P, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|Y Chain Y, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3ZRY|G Chain G, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|4B2Q|G Chain G, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|GG Chain g, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|3ZIA|G Chain G, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|Q Chain Q, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 278
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 94/283 (33%), Positives = 156/283 (55%), Gaps = 45/283 (15%)
Query: 48 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL---GDTPTVD--- 101
V R+KS+KNI+KITK MK+VA+++L + KA+ S L +T +D
Sbjct: 6 VEMRLKSIKNIEKITKTMKIVASTRLSKAE-KAKISAKKMDEAEQLFYKNAETKNLDVEA 64
Query: 102 ----AKKNVIVTISSDKGLCGGINSTAVK-ISKSLH-KLNSDI----------------- 138
A K +IV I+SDKGLCG I+S K + + L+ + N+DI
Sbjct: 65 TETGAPKELIVAITSDKGLCGSIHSQLAKAVRRHLNDQPNADIVTIGDKIKMQLLRTHPN 124
Query: 139 --ELIITELQKNPLNYTQVSVLADDIL---KNVEFDALRIIYSKFHSVVSFLPTMATVLS 193
+L I + K+ + + +++AD +L K + + I Y+ S +SF P+ + +
Sbjct: 125 NIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFYNDPVSSLSFEPSEKPIFN 184
Query: 194 PELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARM 253
+ +E ++ S GK +EI+ T + ++L E+ + M A+ + +E AR
Sbjct: 185 AKTIE-QSPSFGK------FEID---TDANVPRDLFEYTLANQMLTAMAQGYAAEISARR 234
Query: 254 SAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296
+AMD++S+NAG+M++R ++ YNRTRQA IT EL++II+GAS+L
Sbjct: 235 NAMDNASKNAGDMINRYSILYNRTRQAVITNELVDIITGASSL 277
>pdb|3OE7|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|P Chain P, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|Y Chain Y, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
Length = 278
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/283 (32%), Positives = 155/283 (54%), Gaps = 45/283 (15%)
Query: 48 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL---GDTPTVD--- 101
V R+KS+KNI+KITK MK+VA+++L + KA+ S L +T +D
Sbjct: 6 VEMRLKSIKNIEKITKTMKIVASTRLSKAE-KAKISAKKMDEAEQLFYKNAETKNLDVEA 64
Query: 102 ----AKKNVIVTISSDKGLCGGINSTAVK-ISKSLH-KLNSDI----------------- 138
A K +IV I+SDKGLCG I+S K + + L+ + N+DI
Sbjct: 65 TETGAPKELIVAITSDKGLCGSIHSQLAKAVRRHLNDQPNADIVTIGDKIKMQLLRTHPN 124
Query: 139 --ELIITELQKNPLNYTQVSVLADDIL---KNVEFDALRIIYSKFHSVVSFLPTMATVLS 193
+L I + K+ + + +++AD +L K + + I Y+ S +SF P+ + +
Sbjct: 125 NIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFYNDPVSSLSFEPSEKPIFN 184
Query: 194 PELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARM 253
+ +E ++ S GK +EI+ T + ++L E+ + M A+ + +E AR
Sbjct: 185 AKTIE-QSPSFGK------FEID---TDANVPRDLFEYTLANQMLTAMAQGYAAEISARR 234
Query: 254 SAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296
+AMD++S+NAG+M++R ++ YNRTRQA IT EL++ I+GAS+L
Sbjct: 235 NAMDNASKNAGDMINRYSILYNRTRQAVITNELVDTITGASSL 277
>pdb|2QE7|G Chain G, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 286
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 153/290 (52%), Gaps = 52/290 (17%)
Query: 48 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDT---------P 98
++ R++SVKN ++ITKAMKMVAA+KLR Q AEN+R ++ P
Sbjct: 7 IKRRIRSVKNTRQITKAMKMVAAAKLRRAQETAENARPYADKIKEVISSIAAGTKDFSHP 66
Query: 99 TVDA---KKNVIVTISSDKGLCGGINSTAVK-ISKSLH-KLNSDIELIITELQKNPLNY- 152
++A KK + I+SD+GL G N+ ++ +SK++ + S E +I + + ++
Sbjct: 67 MLEARPVKKTGYMVITSDRGLAGPYNANILRLVSKTIEERHQSKDEYVIFAVGRKGRDFF 126
Query: 153 --------TQVSVLAD--------DILKNV-------EFDALRIIYSKFHSVVSFLPTMA 189
+V+ ++D DI ++ FD L I Y++F S + P
Sbjct: 127 KKRGYPVVEEVTGISDTPSLTEIQDIAQSAIGMFADETFDKLTIFYNEFVSPIVQRPVEK 186
Query: 190 TVL---SPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENAC 246
+L S E+++ G + +YE E +L+ L ++++A+L+
Sbjct: 187 QLLPLTSEEVLD---------GPVSAYEYEPDSES--VLEVLLPKYAETLIYSALLDAKA 235
Query: 247 SEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296
SE GARM+AM +++ NA EML+ LTL +NR RQA+IT E+ EI++GA+AL
Sbjct: 236 SEFGARMTAMGNATDNATEMLETLTLQFNRARQAAITQEIAEIVAGANAL 285
>pdb|3OAA|G Chain G, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|O Chain O, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|W Chain W, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|EE Chain e, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 286
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 141/290 (48%), Gaps = 50/290 (17%)
Query: 48 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------TP 98
+R+++ SV+N QKITKAM+MVAASK+R Q + SR + ++G P
Sbjct: 6 IRSKIASVQNTQKITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGNLEYKHP 65
Query: 99 TV---DAKKNVIVTISSDKGLCGGINSTAVKI---------------------SKSLHKL 134
+ D K+ + +S+D+GLCGG+N K SK +
Sbjct: 66 YLEDRDVKRVGYLVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFF 125
Query: 135 NS---DIELIITELQKNP-----LNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLP 186
NS ++ +T + NP + +V + A D D L I+ +KF + +S +P
Sbjct: 126 NSVGGNVVAQVTGMGDNPSLSELIGPVKVMLQAYD---EGRLDKLYIVSNKFINTMSQVP 182
Query: 187 TMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENAC 246
T++ +L + + L YE + +L+ E Q ++ V+EN
Sbjct: 183 TISQLLPLPASDDDDLKHKSWDYL--YEPDPKALLDTLLRRYVESQ----VYQGVVENLA 236
Query: 247 SEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296
SEQ ARM AM +++ N G ++ L L YN+ RQASIT EL EI+SGA+A+
Sbjct: 237 SEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 286
>pdb|1OHH|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
Length = 100
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 56/72 (77%)
Query: 225 LQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITT 284
++ +A + + ++V + SEQ ARM+AMD++S+NA EM+D+LTLT+NRTRQA IT
Sbjct: 23 MKMVAAAKLCGAIHSSVAKQTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITK 82
Query: 285 ELIEIISGASAL 296
ELIEIISGA+AL
Sbjct: 83 ELIEIISGAAAL 94
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 24/26 (92%)
Query: 48 VRNRMKSVKNIQKITKAMKMVAASKL 73
+ R+KS+KNIQKITK+MKMVAA+KL
Sbjct: 6 ITRRLKSIKNIQKITKSMKMVAAAKL 31
>pdb|1FS0|G Chain G, Complex Of GammaEPSILON ATP SYNTHASE FROM E.COLI
Length = 230
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 102/238 (42%), Gaps = 50/238 (21%)
Query: 60 KITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------TPTV---DAKKNVI 107
KITKAM+MVAASK+R Q + SR + ++G P + D K+
Sbjct: 1 KITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGNLEYKHPYLEDRDVKRVGY 60
Query: 108 VTISSDKGLCGGINSTAVKI---------------------SKSLHKLNS---DIELIIT 143
+ +S+D+GLCGG+N K SK + NS ++ +T
Sbjct: 61 LVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVT 120
Query: 144 ELQKNP-----LNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVE 198
+ NP + +V + A D D L I+ +KF + +S +PT++ +L +
Sbjct: 121 GMGDNPSLSELIGPVKVMLQAYD---EGRLDKLYIVSNKFINTMSQVPTISQLLPLPASD 177
Query: 199 REAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAM 256
+ L YE + +L+ E Q ++ V+EN SEQ ARM AM
Sbjct: 178 DDDLKHKSWDYL--YEPDPKALLDTLLRRYVESQ----VYQGVVENLASEQAARMVAM 229
>pdb|1WDI|A Chain A, Crystal Structure Of Tt0907 From Thermus Thermophilus Hb8
Length = 345
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 15/130 (11%)
Query: 81 ENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKS---LHKLNSD 137
E S GLW+ ALLG +++ D G+ + V + + L + D
Sbjct: 87 ERSPGLWE---ALLGPARKAPPGTRLLLLSPKDLAPVPGLQAEVVAVEEDGVRLLRFQGD 143
Query: 138 IELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELV 197
+ + E+ + PL I + + + +Y++ V+ PT +PEL+
Sbjct: 144 LVAHLEEVGEVPL--------PPYIKAKIPMERYQTVYARRPGSVA-APTAGLHFTPELL 194
Query: 198 EREAESGGKL 207
ER E G +L
Sbjct: 195 ERLREMGVEL 204
>pdb|4IHA|A Chain A, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IHA|B Chain B, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IH9|A Chain A, Crystal Structure Of Rice Dwarf14 (d14)
pdb|4IH9|B Chain B, Crystal Structure Of Rice Dwarf14 (d14)
Length = 268
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 13/122 (10%)
Query: 116 LCGGINSTAVKISKSLHKLNSDIELIITEL----QKNPLN-----YTQVSVLADDILKNV 166
L G + S+ L L D +++ +L NP + Y + DD+L +
Sbjct: 24 LSHGFGTDQSAWSRVLPYLTRDHRVVLYDLVCAGSVNPDHFDFRRYDNLDAYVDDLLAIL 83
Query: 167 EFDALRIIYSKF--HSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEI 224
DALRI F HSV + + +A++ P+L + G L+ + GG EI
Sbjct: 84 --DALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGASPRFLNDSDYHGGFELEEI 141
Query: 225 LQ 226
Q
Sbjct: 142 QQ 143
>pdb|3W04|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W04|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W05|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
pdb|3W05|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
Length = 266
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 13/122 (10%)
Query: 116 LCGGINSTAVKISKSLHKLNSDIELIITEL----QKNPLN-----YTQVSVLADDILKNV 166
L G + S+ L L D +++ +L NP + Y + DD+L +
Sbjct: 22 LSHGFGTDQSAWSRVLPYLTRDHRVVLYDLVCAGSVNPDHFDFRRYDNLDAYVDDLLAIL 81
Query: 167 EFDALRIIYSKF--HSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEI 224
DALRI F HSV + + +A++ P+L + G L+ + GG EI
Sbjct: 82 --DALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGASPRFLNDSDYHGGFELEEI 139
Query: 225 LQ 226
Q
Sbjct: 140 QQ 141
>pdb|4DNP|A Chain A, Crystal Structure Of Dad2
Length = 269
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 152 YTQVSVLADDILKNVEFDALRIIYSKF--HSVVSFLPTMATVLSPELVEREAESGGKLGE 209
YT + DD+L + DAL I + HSV + + +A++ PEL + G
Sbjct: 70 YTTLDPYVDDLLHIL--DALGIDCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPRF 127
Query: 210 LDSYEIEGGETKGEI 224
L+ + GG +GEI
Sbjct: 128 LNDEDYHGGFEQGEI 142
>pdb|1M41|A Chain A, Crystal Structure Of Escherichia Coli Alkanesulfonate
Monooxygenase Ssud At 2.3 A Resolution
pdb|1M41|B Chain B, Crystal Structure Of Escherichia Coli Alkanesulfonate
Monooxygenase Ssud At 2.3 A Resolution
Length = 380
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 91 TALLGDTPTVDAKKNVIVTISSDKGLCGGINS--TAVKISKSLHKLNSDIELIITEL-QK 147
TAL+GD PTV A+ N + D + G A ++ + L L +++ I E+ Q
Sbjct: 302 TALVGDGPTVAARINEYAALGIDSFVLSGYPHLEEAYRVGELLFPL---LDVAIPEIPQP 358
Query: 148 NPLNYTQVSVLADDILKNV 166
PLN +V D I + V
Sbjct: 359 QPLNPQGEAVANDFIPRKV 377
>pdb|1NQK|A Chain A, Structural Genomics, Crystal Structure Of Alkanesulfonate
Monooxygenase
Length = 381
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 91 TALLGDTPTVDAKKNVIVTISSDKGLCGGINS--TAVKISKSLHKLNSDIELIITEL-QK 147
TAL+GD PTV A+ N + D + G A ++ + L L +++ I E+ Q
Sbjct: 303 TALVGDGPTVAARINEYAALGIDSFVLSGYPHLEEAYRVGELLFPL---LDVAIPEIPQP 359
Query: 148 NPLNYTQVSVLADDILKNV 166
PLN +V D I + V
Sbjct: 360 QPLNPQGEAVANDFIPRKV 378
>pdb|4DNQ|A Chain A, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|B Chain B, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|C Chain C, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|D Chain D, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|E Chain E, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|F Chain F, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|G Chain G, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|H Chain H, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|I Chain I, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|J Chain J, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|K Chain K, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|L Chain L, Crystal Structure Of Dad2 S96a Mutant
Length = 269
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 152 YTQVSVLADDILKNVEFDALRIIYSKF--HSVVSFLPTMATVLSPELVEREAESGGKLGE 209
YT + DD+L + DAL I + H+V + + +A++ PEL + G
Sbjct: 70 YTTLDPYVDDLLHIL--DALGIDCCAYVGHAVSAMIGILASIRRPELFSKLILIGASPRF 127
Query: 210 LDSYEIEGGETKGEI 224
L+ + GG +GEI
Sbjct: 128 LNDEDYHGGFEQGEI 142
>pdb|2FEZ|A Chain A, Mycobacterium Tuberculosis Embr
pdb|2FF4|A Chain A, Mycobacterium Tuberculosis Embr In Complex With Low
Affinity Phosphopeptide
pdb|2FF4|B Chain B, Mycobacterium Tuberculosis Embr In Complex With Low
Affinity Phosphopeptide
Length = 388
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 33/69 (47%)
Query: 219 ETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTR 278
E +G +L +L +FQF A++E+ A+ A + R + + + LT+
Sbjct: 144 EWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPY 203
Query: 279 QASITTELI 287
+ + T+LI
Sbjct: 204 REPLWTQLI 212
>pdb|4IH4|A Chain A, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|B Chain B, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|C Chain C, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|D Chain D, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
Length = 267
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 152 YTQVSVLADDILKNVEFDALRIIYSKF--HSVVSFLPTMATVLSPELVEREAESGGKLGE 209
YT + DD+L V D+L I + HSV + + +A++ PEL + G
Sbjct: 69 YTTLDPYVDDLLNIV--DSLGIQNCAYVGHSVSAMIGIIASIRRPELFSKLILIGFSPRF 126
Query: 210 LDSYEIEGGETKGEI 224
L+ + GG +GEI
Sbjct: 127 LNDEDYHGGFEEGEI 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,229,126
Number of Sequences: 62578
Number of extensions: 260919
Number of successful extensions: 769
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 725
Number of HSP's gapped (non-prelim): 31
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)