Query 040116
Match_columns 298
No_of_seqs 140 out of 1069
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 05:18:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040116.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040116hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0224 AtpG F0F1-type ATP syn 100.0 4.7E-74 1E-78 531.6 26.4 247 46-297 1-287 (287)
2 PRK13427 F0F1 ATP synthase sub 100.0 1.1E-71 2.3E-76 521.0 29.9 249 42-297 1-289 (289)
3 PRK13425 F0F1 ATP synthase sub 100.0 5.3E-71 1.2E-75 516.7 29.5 248 42-298 1-291 (291)
4 PRK14111 F0F1 ATP synthase sub 100.0 7.4E-71 1.6E-75 515.6 29.9 247 42-297 1-289 (290)
5 PRK13423 F0F1 ATP synthase sub 100.0 8.8E-71 1.9E-75 514.6 29.1 249 42-298 1-288 (288)
6 PRK13424 F0F1 ATP synthase sub 100.0 1.4E-70 3.1E-75 513.9 29.2 251 42-298 1-291 (291)
7 PF00231 ATP-synt: ATP synthas 100.0 1.2E-70 2.6E-75 513.9 27.7 249 43-296 1-290 (290)
8 PRK14110 F0F1 ATP synthase sub 100.0 3.1E-70 6.8E-75 511.6 29.0 248 44-297 5-291 (291)
9 PRK13426 F0F1 ATP synthase sub 100.0 4E-70 8.7E-75 510.8 28.5 249 42-295 1-290 (291)
10 PRK13422 F0F1 ATP synthase sub 100.0 1.1E-69 2.4E-74 509.3 29.6 251 42-296 1-298 (298)
11 TIGR01146 ATPsyn_F1gamma ATP s 100.0 5.2E-69 1.1E-73 502.4 28.5 248 42-296 1-287 (287)
12 PRK05621 F0F1 ATP synthase sub 100.0 2.1E-68 4.6E-73 497.5 28.5 246 42-296 1-284 (284)
13 TIGR03323 alt_F1F0_F1_gam alte 100.0 6E-68 1.3E-72 494.8 27.8 247 48-296 1-285 (285)
14 KOG1531 F0F1-type ATP synthase 100.0 4.8E-66 1E-70 467.1 21.7 267 7-297 5-304 (304)
15 PF00700 Flagellin_C: Bacteria 75.8 22 0.00047 26.7 7.8 53 242-294 11-63 (86)
16 PRK04456 acetyl-CoA decarbonyl 55.7 20 0.00044 35.8 5.0 27 105-131 200-227 (463)
17 TIGR00316 cdhC CO dehydrogenas 52.2 26 0.00055 35.1 5.0 26 106-131 198-224 (458)
18 smart00216 VWD von Willebrand 42.5 7.8 0.00017 32.4 -0.1 13 112-124 141-153 (162)
19 PF03598 CdhC: CO dehydrogenas 42.0 14 0.00029 36.6 1.4 27 106-132 199-226 (411)
20 PF00094 VWD: von Willebrand f 39.3 10 0.00022 31.1 0.1 13 112-124 137-149 (159)
21 KOG3287 Membrane trafficking p 39.2 72 0.0016 29.2 5.4 41 44-86 154-194 (236)
22 PF00884 Sulfatase: Sulfatase; 36.4 28 0.0006 31.3 2.5 45 73-120 210-254 (308)
23 COG1692 Calcineurin-like phosp 36.3 12 0.00027 34.7 0.2 14 111-124 194-207 (266)
24 PF10960 DUF2762: Protein of u 36.1 1.8E+02 0.004 21.7 9.1 66 222-289 3-68 (71)
25 PRK09529 bifunctional acetyl-C 35.8 63 0.0014 34.2 5.1 26 106-131 499-525 (711)
26 PF02870 Methyltransf_1N: 6-O- 35.3 17 0.00036 26.7 0.7 18 106-123 13-31 (77)
27 TIGR03417 chol_sulfatase choli 33.4 48 0.001 33.4 3.9 30 90-119 266-295 (500)
28 COG1614 CdhC CO dehydrogenase/ 28.5 89 0.0019 30.5 4.5 27 104-130 198-225 (470)
29 PF07341 DUF1473: Protein of u 25.4 2.4E+02 0.0052 24.1 6.0 74 45-120 36-119 (163)
30 PRK13759 arylsulfatase; Provis 24.3 95 0.0021 31.2 4.1 28 90-117 281-308 (485)
31 PF10498 IFT57: Intra-flagella 23.7 4.2E+02 0.0091 25.9 8.3 63 224-293 253-317 (359)
32 PF14335 DUF4391: Domain of un 23.2 4.3E+02 0.0094 23.6 7.8 71 220-290 145-218 (221)
33 PF07640 QPP: QPP; InterPro: 23.0 27 0.00058 22.8 -0.1 10 116-125 10-19 (36)
34 TIGR00282 metallophosphoestera 22.7 33 0.00072 32.1 0.4 19 103-124 190-208 (266)
35 COG3404 Methenyl tetrahydrofol 22.4 3.2E+02 0.0069 24.7 6.5 45 220-264 58-116 (208)
36 PF08665 PglZ: PglZ domain; I 22.3 45 0.00098 28.8 1.2 11 106-116 164-174 (181)
37 PRK08073 flgL flagellar hook-a 21.7 2.5E+02 0.0055 26.1 6.2 51 242-292 214-264 (287)
38 PF08776 VASP_tetra: VASP tetr 20.9 2.6E+02 0.0056 18.7 4.2 26 264-289 10-35 (40)
39 COG1344 FlgL Flagellin and rel 20.3 2.7E+02 0.0059 26.8 6.3 49 242-290 284-332 (360)
No 1
>COG0224 AtpG F0F1-type ATP synthase, gamma subunit [Energy production and conversion]
Probab=100.00 E-value=4.7e-74 Score=531.55 Aligned_cols=247 Identities=43% Similarity=0.612 Sum_probs=217.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCCC-------------CCCCceEEEEEcC
Q 040116 46 QIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPT-------------VDAKKNVIVTISS 112 (298)
Q Consensus 46 ~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~~-------------~~~~k~~~IvitS 112 (298)
++||+||+||++|+|||+||+|||++||+|+|+++.+.+||++++++++.++.. ...+++++|||||
T Consensus 1 keik~kI~Svk~t~KITkAM~mVaasKl~kaq~~~~a~~pY~e~i~~vl~~l~~~~~~~~~p~~~~~~e~kr~~~IviTS 80 (287)
T COG0224 1 KEIRRKIKSVKNTQKITKAMEMVAASKLRKAQERAEAARPYAEKIRKVLGHLASANLELDHPLLKPTREVKRVLYIVITS 80 (287)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcccccCCcccccccCCCceEEEEEec
Confidence 589999999999999999999999999999999999999999999999987532 1246779999999
Q ss_pred CCccccccchHHHHHHHHhhhcc-c-----------------------CceeeeeeccCCCCChHhhHHHHHHHHh---c
Q 040116 113 DKGLCGGINSTAVKISKSLHKLN-S-----------------------DIELIITELQKNPLNYTQVSVLADDILK---N 165 (298)
Q Consensus 113 DrGLCG~fN~~vik~~~~~~~~~-~-----------------------~~~~~~~~~~~~~~~~~~a~~i~~~l~~---~ 165 (298)
|||||||||+||+|.+...++.. + ++...+.++++. |+|+.+..|++.+++ .
T Consensus 81 DrGLcG~~Nsni~k~~~~~i~~~~~~~~~~~li~iG~Kg~~~f~~~~~~i~~~~~~l~~~-p~~~~~~~i~~~~~~~~~~ 159 (287)
T COG0224 81 DRGLCGGFNSNIFKKVENLIKELKNKGKEVKLILIGKKGIDFFKKRGYNILESFTGLGDN-PSFEEAIQIADKILDAFLE 159 (287)
T ss_pred CcchhhhhhHHHHHHHHHHHHhhhccCCceEEEEEchHHHHHHHhcCcchhhHhhccccC-CCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999888531 1 233446677665 899999999999887 5
Q ss_pred CCcceEEEEeeeccccccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040116 166 VEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENA 245 (298)
Q Consensus 166 ~~~d~v~iiyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~alleS~ 245 (298)
|++|+|+|+||+|+|.++|+|+++++||++..+...... +.. ...|+||| |+++||+.|+|+|+.++||+|++||.
T Consensus 160 g~~d~v~l~yn~f~n~~sq~~~~~~llP~~~~~~~~~~~-~~~-~~~~efEp--d~e~il~~Ll~~Y~~~~iy~alles~ 235 (287)
T COG0224 160 GEIDELYLVYNKFKNALSQEPTVQQLLPLDKIEDEAEEE-EPG-LWDYEFEP--DAEEILETLLPRYLESQLYGALLESK 235 (287)
T ss_pred CCCceEEEEecccccceeeeeeeEEEecCCcccchhhhc-ccc-ccceeeCC--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999997543321110 101 25799999 99999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhhc
Q 040116 246 CSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 297 (298)
Q Consensus 246 aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl~ 297 (298)
||||+|||+||++|||||+++|++|++.|||+||++|||||+|||+|++||+
T Consensus 236 asE~aaRm~AM~~ATdNA~~lI~~l~l~yNk~RQa~ITqEL~EIV~Ga~AL~ 287 (287)
T COG0224 236 ASEHAARMTAMKNATDNAGDLIKELTLVYNKARQAAITQELIEIVGGAEALE 287 (287)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhC
Confidence 9999999999999999999999999999999999999999999999999985
No 2
>PRK13427 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=1.1e-71 Score=520.97 Aligned_cols=249 Identities=30% Similarity=0.407 Sum_probs=215.4
Q ss_pred CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCCC-----------CC--CCceEEE
Q 040116 42 SISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPT-----------VD--AKKNVIV 108 (298)
Q Consensus 42 Masl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~~-----------~~--~~k~~~I 108 (298)
|+++++||+||+||++|+|||+||||||++|+||+|+++++.+||++++.+++.++.. .. .++.+||
T Consensus 1 Ma~lkeik~RI~sv~st~kIT~AMkmVAasklrka~~~~~~~r~Y~~~i~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~i 80 (289)
T PRK13427 1 MATPREIKKRINSVKNTRKITRTMEMVSTAKSKKATDRVNAAHPYANKIKELVSSLASLEGVVHSPYLRRPEKIRTVALL 80 (289)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhCcCcccCCCcccCCccCceEEE
Confidence 8999999999999999999999999999999999999999999999999988876310 11 1345799
Q ss_pred EEcCCCccccccchHHHHHHHHhhhc---c--c-------------------CceeeeeeccCCCCChHhhHHHHHHHHh
Q 040116 109 TISSDKGLCGGINSTAVKISKSLHKL---N--S-------------------DIELIITELQKNPLNYTQVSVLADDILK 164 (298)
Q Consensus 109 vitSDrGLCG~fN~~vik~~~~~~~~---~--~-------------------~~~~~~~~~~~~~~~~~~a~~i~~~l~~ 164 (298)
|||||||||||||++|+|.+.++++. . + .+...+.++. .+++|+.+..|++.+++
T Consensus 81 vitSDrGLcG~fN~~v~k~~~~~i~~~~~~~~~~~~~~vG~kg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~l~~ 159 (289)
T PRK13427 81 IITANRGLCGGFNSNLNRMAKARIAELKKKGVNVELHIVGKKGISFFKFAGEKAEKTYTHID-DKSGYKEAEELANLFME 159 (289)
T ss_pred EEeCCCCccccccHHHHHHHHHHHHHHHhCCCcEEEEEEeHHHHHHHHHcCCCceeeecccC-CccCHHHHHHHHHHHHH
Confidence 99999999999999999999998742 1 1 1222344553 46799999999998876
Q ss_pred ---cCCcceEEEEeeeccccccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 040116 165 ---NVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAV 241 (298)
Q Consensus 165 ---~~~~d~v~iiyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~al 241 (298)
.|++|+|+|+||+|+|.++|+|.++++||++....... ....+.|.||| ++++||+.|+|.||++.||+|+
T Consensus 160 ~~~~~~~d~v~viy~~f~s~~~q~~~~~~llP~~~~~~~~~----~~~~~~~~~ep--~~~~vl~~l~~~yl~~~ly~al 233 (289)
T PRK13427 160 RFANESVDAVEIASTVYYSAASQKPETTRVLPLEPPTAAAE----GSVQDDVVYEP--SPEAILESLLPLVVKTAFLKAI 233 (289)
T ss_pred HHHcCCCCEEEEEecccccceecceeeEEeeCCCccccccc----ccCCCceEecC--CHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999953211111 01123589999 9999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhhc
Q 040116 242 LENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 297 (298)
Q Consensus 242 leS~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl~ 297 (298)
+||++|||++||+||++|||||+|++++|+++|||+||++||+||+|||||++|++
T Consensus 234 les~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQ~~IT~EL~EIv~Gaeal~ 289 (289)
T PRK13427 234 LEANASEQIARRIAMKSATDAASEMIKLLTRGYNRVRQAKITQEISEIVGGADALN 289 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999984
No 3
>PRK13425 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=5.3e-71 Score=516.71 Aligned_cols=248 Identities=33% Similarity=0.480 Sum_probs=215.3
Q ss_pred CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCC-----C------CC--CCceEEE
Q 040116 42 SISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTP-----T------VD--AKKNVIV 108 (298)
Q Consensus 42 Masl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~-----~------~~--~~k~~~I 108 (298)
|+++++||+||+||++|+|||+||||||++|+||+++++.+.+||++++.+++.++. . .. .++.+||
T Consensus 1 M~~l~~ik~RI~sv~~t~kIT~AMkmVA~aklrka~~~~~~~~~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i 80 (291)
T PRK13425 1 MPTLKDIRVRIKGVKSTQQVTKAMKMVAAAKLRRAQERAIMARPYAAKLKEMLGSLSAKVDTSLNPLLSPRSEVNKVLVI 80 (291)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccCcccCccccccccCccEEEE
Confidence 899999999999999999999999999999999999999999999999998887641 0 11 2445799
Q ss_pred EEcCCCccccccchHHHHHHHHhhhc-------c-c-------------------CceeeeeeccCCCCChHhhHHHHHH
Q 040116 109 TISSDKGLCGGINSTAVKISKSLHKL-------N-S-------------------DIELIITELQKNPLNYTQVSVLADD 161 (298)
Q Consensus 109 vitSDrGLCG~fN~~vik~~~~~~~~-------~-~-------------------~~~~~~~~~~~~~~~~~~a~~i~~~ 161 (298)
|||||||||||||++|+|.+.+.++. . + ++...+.++. +.|+|+.+..|++.
T Consensus 81 vitSDrGLCG~fN~~v~k~~~~~~~~~~~~~~~~~~~~l~~iG~Kg~~~~~~~~~~i~~~~~~~~-~~~~~~~a~~i~~~ 159 (291)
T PRK13425 81 LITSDRGLCGAFNTNIIKLAQKVIHEDYAALHAKGGVSMICAGTRGFDFFRKRGYNIVKGYPGVF-QNLDFSVAKEIAET 159 (291)
T ss_pred EEeCCCcccccchHHHHHHHHHHHHHhhhhhccCCceEEEEeeHHHHHHHHHcCCCceeeecCcC-CCCCHHHHHHHHHH
Confidence 99999999999999999999988731 1 1 1223344443 34689999999988
Q ss_pred HHh---cCCcceEEEEeeeccccccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHH
Q 040116 162 ILK---NVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMF 238 (298)
Q Consensus 162 l~~---~~~~d~v~iiyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly 238 (298)
+++ .+++|+|+|+||+|+|.++|+|.++++||++....... ....|.||| ++++||++|+|.||++.||
T Consensus 160 ~~~~~~~~~~d~v~viy~~f~~~~~~~~~~~~llP~~~~~~~~~------~~~~~~~eP--~~~~il~~L~~~yl~~~ly 231 (291)
T PRK13425 160 ASGMYLRGEVDKVVVVYNEFKSVLAPNLKSEVLLPITPEKPGAE------GGSDYIYEP--SPAAIIDELVPKHLNTQVW 231 (291)
T ss_pred HHHHHHcCCCCEEEEEeccceeceeeeEEEEEeeCCCccccccc------cCCCeEecC--CHHHHHHHHHHHHHHHHHH
Confidence 876 57999999999999999999999999999963221111 112489999 9999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhhcC
Q 040116 239 NAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG 298 (298)
Q Consensus 239 ~alleS~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl~~ 298 (298)
+|++||++|||++||+||++|||||+|++++|+++|||+||++||+||+|||+|++|++|
T Consensus 232 ~al~es~aSE~aaRm~AM~~At~Na~e~i~~L~~~yNr~RQ~~IT~Ei~EIv~Ga~al~~ 291 (291)
T PRK13425 232 RMMLESNAAEQAARMTAMDSATENAKELLRTLNISYNRARQAAITKELSEIVAGADALQG 291 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999986
No 4
>PRK14111 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=7.4e-71 Score=515.57 Aligned_cols=247 Identities=32% Similarity=0.452 Sum_probs=214.6
Q ss_pred CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCC-------C------C-C-CCceE
Q 040116 42 SISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTP-------T------V-D-AKKNV 106 (298)
Q Consensus 42 Masl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~-------~------~-~-~~k~~ 106 (298)
|+++++||+||+||++|+|||+||||||++|+||+++++.+.+||++++++++.++. . . . .++.+
T Consensus 1 Ma~lkeik~RI~Sv~s~~kITkAMkmvAasklrka~~~~~~~~~Y~~~i~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 80 (290)
T PRK14111 1 MPSTREIRRRIRSVKNTAQITRAMEMVSASKMRRAQRNVLATRPYADRIRDVMGDLTARTVGAARVGPLLEKRPTVKRVA 80 (290)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcccCccccCcccccCccccceE
Confidence 899999999999999999999999999999999999999999999999988887632 1 0 1 24457
Q ss_pred EEEEcCCCccccccchHHHHHHHHhhhcc-----c-------------------CceeeeeeccCCCCChHhhHHHHHHH
Q 040116 107 IVTISSDKGLCGGINSTAVKISKSLHKLN-----S-------------------DIELIITELQKNPLNYTQVSVLADDI 162 (298)
Q Consensus 107 ~IvitSDrGLCG~fN~~vik~~~~~~~~~-----~-------------------~~~~~~~~~~~~~~~~~~a~~i~~~l 162 (298)
|||||||||||||||++|+|.+.+.++.. + .+...+.+.++ .|+|+++..|++.+
T Consensus 81 ~IvitSDrGLCG~fN~~l~k~~~~~i~~~~~~~~~~~l~~vG~Kg~~~l~~~~~~i~~~~~~~~~-~p~~~~~~~i~~~~ 159 (290)
T PRK14111 81 LILVTPDRGLAGSLNANVLRRAIRFITDERSMGRTVDVIAIGRKGRDFMVRTGQALVAEFTRLGD-APKLEAILPVATSA 159 (290)
T ss_pred EEEEeCCCCccccccHHHHHHHHHHHHHHHhCCCceEEEEEehHHHHHHHHcCCCceeeeecCCC-CCCHHHHHHHHHHH
Confidence 99999999999999999999999987421 1 12334445544 35999999999877
Q ss_pred Hh---cCCcceEEEEeeeccccccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHH
Q 040116 163 LK---NVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFN 239 (298)
Q Consensus 163 ~~---~~~~d~v~iiyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~ 239 (298)
++ .+++|+|+|+||+|+|.++|+|.++++||++...... ...++|.||| ++++||+.|+|.||++.||+
T Consensus 160 ~~~~~~~~~d~v~iiy~~f~s~~~~~~~~~~llP~~~~~~~~------~~~~~~~~ep--~~~~il~~L~~~yl~~~ly~ 231 (290)
T PRK14111 160 INGFQSGKYDEVYVLYSEFINTLVQRPTIKQLLPIEPPEIST------TTVVDYTYEP--SPEEVLRALLPRFVEVQLYQ 231 (290)
T ss_pred HHHHHcCCCCEEEEEecccccceeeeeeEEEecCCCcccccc------ccccceeecC--CHHHHHHHHHHHHHHHHHHH
Confidence 76 4799999999999999999999999999996322110 0223589999 99999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhhc
Q 040116 240 AVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 297 (298)
Q Consensus 240 alleS~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl~ 297 (298)
|++||++|||+|||+||++|||||+|++++|+++|||+||++||+||+|||+|++|++
T Consensus 232 al~es~aSE~aaRm~AM~~At~Na~e~i~~L~~~yNr~RQ~~IT~El~EIVsGaeal~ 289 (290)
T PRK14111 232 AVLESIASEHSARMVAMRNATDNAKELVRDLTLTYNKARQAAITKEVSEIASGAAALG 289 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999986
No 5
>PRK13423 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=8.8e-71 Score=514.58 Aligned_cols=249 Identities=39% Similarity=0.563 Sum_probs=214.9
Q ss_pred CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCC-----C------CC-CCceEEEE
Q 040116 42 SISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTP-----T------VD-AKKNVIVT 109 (298)
Q Consensus 42 Masl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~-----~------~~-~~k~~~Iv 109 (298)
|+++++||+||+||++|+|||+||||||++|+||+|+++.+.+||++++.+++.++. . .. .++.+|||
T Consensus 1 M~~l~~ik~RI~Sv~~t~kItkAMkmvAaaklrka~~~~~~~~~y~~~i~~~~~~l~~~~~~~~~p~~~~~~~~~~~~Iv 80 (288)
T PRK13423 1 MASLKDIKKRIVSVKNTRQITKAMKMVSAAKLRRAQENVVAARPYAAKLGEVLGSLAARAGEDAHPLLVPREVKKALLVV 80 (288)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccCcccCcccccCCCceEEEEE
Confidence 899999999999999999999999999999999999999999999999988887632 1 11 24457999
Q ss_pred EcCCCccccccchHHHHHHHHhhhcc-----c-------------------CceeeeeeccCCCCChHhhHHHHHHHHh-
Q 040116 110 ISSDKGLCGGINSTAVKISKSLHKLN-----S-------------------DIELIITELQKNPLNYTQVSVLADDILK- 164 (298)
Q Consensus 110 itSDrGLCG~fN~~vik~~~~~~~~~-----~-------------------~~~~~~~~~~~~~~~~~~a~~i~~~l~~- 164 (298)
|||||||||+||++|+|.+.+.++.. + .+...+.++. ..++|+.+..|++.+++
T Consensus 81 itSDrGLCG~fN~~i~k~~~~~i~~~~~~~~~~~l~~vG~k~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~i~~~l~~~ 159 (288)
T PRK13423 81 VTSDRGLCGGFNSNLCKAAERFLKENKDEFEEISLTTVGRKGREFLKNRGLIIRKNYGGVV-ANLTYETAALLAQELIEG 159 (288)
T ss_pred EeCCCCCcchhhHHHHHHHHHHHHHHHhcCCceEEEEecHHHHHHHHHcCCCceeeecCcC-CCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999988421 1 1122233343 34689999999988876
Q ss_pred --cCCcceEEEEeeeccccccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 040116 165 --NVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVL 242 (298)
Q Consensus 165 --~~~~d~v~iiyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~all 242 (298)
.+++|+|+|+||+|+|+++|+|.++++||++....... ...+.|.||| ++++||++|+|.||++.||+|++
T Consensus 160 ~~~~~~d~v~iiy~~f~n~~~q~~~~~~llP~~~~~~~~~-----~~~~~~~~ep--~~~~vl~~l~~~yl~~~ly~al~ 232 (288)
T PRK13423 160 YLAGEYDEVYLVYNEFKSVMSQDITVQQLLPIDPPEAADD-----EYLPEYIYEP--SRDALLAELLPKHVEVQIYRALL 232 (288)
T ss_pred HhcCCCCEEEEEecccccccccceeEEEecCCCccccccc-----ccccceeecC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999963222100 1123589999 99999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhhcC
Q 040116 243 ENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG 298 (298)
Q Consensus 243 eS~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl~~ 298 (298)
||++|||++||+||++|||||+|++++|+++|||+||++||+||+|||+|++|+++
T Consensus 233 es~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQ~~IT~EL~EIvsGaeal~~ 288 (288)
T PRK13423 233 ESVASEHGARMTAMDSATKNATEMIGKLTLQYNRARQAAITTELMEIVSGAEALKG 288 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999975
No 6
>PRK13424 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=1.4e-70 Score=513.89 Aligned_cols=251 Identities=34% Similarity=0.518 Sum_probs=215.1
Q ss_pred CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCC-----C------CC--CCceEEE
Q 040116 42 SISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTP-----T------VD--AKKNVIV 108 (298)
Q Consensus 42 Masl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~-----~------~~--~~k~~~I 108 (298)
|+++++||+||+||++|+|||+||||||++|+||+++++.+.+||++++.+++.++. . .. .++.+||
T Consensus 1 M~~l~eik~RI~sv~~~~kIt~AMkmVAasklrka~~~~~~~~~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~I 80 (291)
T PRK13424 1 MPSLKDVKVKIAGVKKTKQITKAMNMVASAKLRGAQQRIERFRPYAEKFYDMLGDLASRADSSAHPLLEVREEIKTCGIV 80 (291)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccCcccCcccccccccCcEEEE
Confidence 899999999999999999999999999999999999999999999999988876632 0 11 1345799
Q ss_pred EEcCCCccccccchHHHHHHHHhhhc----cc--------------------CceeeeeeccCCCCChHhhHHHHHHHHh
Q 040116 109 TISSDKGLCGGINSTAVKISKSLHKL----NS--------------------DIELIITELQKNPLNYTQVSVLADDILK 164 (298)
Q Consensus 109 vitSDrGLCG~fN~~vik~~~~~~~~----~~--------------------~~~~~~~~~~~~~~~~~~a~~i~~~l~~ 164 (298)
|||||||||||||++|+|.+.++++. .. .+...+.++. ..|+|+.+..|++.+++
T Consensus 81 vitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~vG~K~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~ 159 (291)
T PRK13424 81 LITSDRGLCGSFNANLINAALKLAKQKTAEGKTVKFYCVGKKGRDAIRKTDFEIVTAYADQM-TSFDFQLANSIGLEVID 159 (291)
T ss_pred EEeCCCcccccchHHHHHHHHHHHHHHhhCCCceEEEEeeHHHHHHHHHcCCCeeEeeccCC-CCCCHHHHHHHHHHHHH
Confidence 99999999999999999999998842 11 1222334443 34689999999987776
Q ss_pred ---cCCcceEEEEeeeccccccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 040116 165 ---NVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAV 241 (298)
Q Consensus 165 ---~~~~d~v~iiyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~al 241 (298)
.+++|+|+|+||+|+|+++|+|.++++||++..+.... .+...+.|+||| +++++|++|+|.||++.||+|+
T Consensus 160 ~~~~~~~d~v~viy~~f~s~~~~~~~~~~llP~~~~~~~~~---~~~~~~~~~~ep--~~~~il~~L~~~yl~~~ly~al 234 (291)
T PRK13424 160 GYLTGELDEVVLVYGEFVSMARQLPITLQILPIAPEEAEEE---EAGASSEYIYEP--SVEGLLAELLPRFIKVQIYRGL 234 (291)
T ss_pred HHHcCCCCEEEEEeccccccccCceEEEEecCCCccccccc---ccccccCeeecC--CHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999963222110 111122589999 9999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhhcC
Q 040116 242 LENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG 298 (298)
Q Consensus 242 leS~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl~~ 298 (298)
+||++|||++||+||++|||||+|++++|+++|||+||++||+||+|||+|++|+++
T Consensus 235 ~es~asE~aaR~~AM~~At~Na~e~i~~L~~~yNr~RQ~~IT~Ei~EIvsGa~al~~ 291 (291)
T PRK13424 235 LDTSASEHAARMTAMDNATRNCDDMIGSLTLLYNKTRQASITRELMDIVGGAEALKG 291 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999864
No 7
>PF00231 ATP-synt: ATP synthase This Pfam entry corresponds to chain g; InterPro: IPR000131 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The ATPase F1 complex gamma subunit forms the central shaft that connects the F0 rotary motor to the F1 catalytic core. The gamma subunit functions as a rotary motor inside the cylinder formed by the alpha(3)beta(3) subunits in the F1 complex []. The best-conserved region of the gamma subunit is its C terminus, which seems to be essential for assembly and catalysis. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 3OFN_G 3FKS_P 3OEE_Y 2HLD_Y 3OEH_Y 2XOK_G 3ZRY_G 3OE7_P 2WPD_G 3OAA_e ....
Probab=100.00 E-value=1.2e-70 Score=513.88 Aligned_cols=249 Identities=41% Similarity=0.585 Sum_probs=210.6
Q ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCCCC-------------CCCceEEEE
Q 040116 43 ISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV-------------DAKKNVIVT 109 (298)
Q Consensus 43 asl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~~~-------------~~~k~~~Iv 109 (298)
||+++||+||+||++|+|||+||||||++|+||+++++.+.+||++++..++.++... +.++.+|||
T Consensus 1 A~lk~ik~RI~sv~~i~kIt~aMkmvA~sklrk~~~~~~~~~~y~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv 80 (290)
T PF00231_consen 1 ASLKEIKRRIKSVKSIQKITKAMKMVAASKLRKAQKALEAARPYAETIEEILADLLSSISDYQHPLLKKREEVKKVLLIV 80 (290)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHTTT--SSGS-----SCEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccccCcccccccccceEEEEE
Confidence 6899999999999999999999999999999999999999999999999999876211 347789999
Q ss_pred EcCCCccccccchHHHHHHHHhhhccc------------------------CceeeeeeccCCCCChHhhHHHHHHHHh-
Q 040116 110 ISSDKGLCGGINSTAVKISKSLHKLNS------------------------DIELIITELQKNPLNYTQVSVLADDILK- 164 (298)
Q Consensus 110 itSDrGLCG~fN~~vik~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~a~~i~~~l~~- 164 (298)
||||||||||||++|+|.+.++++..+ ++...+.+++ .+++++.+..|++.+++
T Consensus 81 itSDrGLCG~fN~~v~k~~~~~~~~~~~~g~~~~l~~iG~K~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~i~~~l~~~ 159 (290)
T PF00231_consen 81 ITSDRGLCGGFNSNVIKAAESFIKEKDDQGKEVKLIVIGKKGRDFLKKRGYNIIASFNGIS-SDPTFEEASEIAEKLIDL 159 (290)
T ss_dssp E--STSSSTTHHHHHHHHHHHHHCCSCTTTSEEEEEEESHHHHHHHHCSSTTEEEEEESBT-SS--HHHHHHHHHHHHHH
T ss_pred EecCccccccccHHHHHHHHHHHhhccccCCceEEEEeCcchhhhhhhCCCcceeeeeccc-chhhHHHHHHHHHHHHhh
Confidence 999999999999999999999995421 2233445554 57899999999999997
Q ss_pred --cCCcceEEEEeeeccccccccceeeeecCcchhh-hhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 040116 165 --NVEFDALRIIYSKFHSVVSFLPTMATVLSPELVE-REAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAV 241 (298)
Q Consensus 165 --~~~~d~v~iiyn~f~s~~~~~~~~~~lLP~~~~~-~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~al 241 (298)
.|++|+|+|+||+|+|.++|+|.++++||+.... ..... ++.....|.||| +++++|+.|+|.||++.||+|+
T Consensus 160 ~~~~~~d~v~viy~~~~~~~~~~~~~~~llP~~~~~~~~~~~--~~~~~~~~~~ep--~~~~il~~L~~~yl~~~l~~al 235 (290)
T PF00231_consen 160 YESGEIDEVYVIYNKFKSAVSQEPVVEQLLPLEKDIEQSSEE--KWPKKSPYEFEP--SPEEILDDLLPQYLFAQLYGAL 235 (290)
T ss_dssp CCCCS-SEEEEEEEEECSTTEEEEEEEEESSS-----HHHHH--TTTTGGGCCCSS--TCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCeEEEEEEEeccceeeeEEeeehhhhhccchhhccc--cccCCCceEEcC--CHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999972211 11111 222456789999 9999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhh
Q 040116 242 LENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296 (298)
Q Consensus 242 leS~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl 296 (298)
+||++|||++||+||++|||||+|++++|+++|||+||++||+||+|||||++||
T Consensus 236 ~eS~asE~~aR~~AM~~At~Na~e~i~~L~~~yNr~RQa~IT~Ei~EIvsGaeAl 290 (290)
T PF00231_consen 236 LESKASENAARMIAMENATDNAEELIDKLTLEYNRARQAEITQEIIEIVSGAEAL 290 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999996
No 8
>PRK14110 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=3.1e-70 Score=511.55 Aligned_cols=248 Identities=31% Similarity=0.488 Sum_probs=213.8
Q ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCC---------C--CC-CCceEEEEEc
Q 040116 44 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTP---------T--VD-AKKNVIVTIS 111 (298)
Q Consensus 44 sl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~---------~--~~-~~k~~~Ivit 111 (298)
++++||+||+||++|+|||+||||||++|+||+|+++.+.+||++++.+++.++. . .. .++.++||||
T Consensus 5 slkeik~RI~sv~~~~kIT~AMkmVAasklrkaq~~~~~~~~y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ivit 84 (291)
T PRK14110 5 SPRDIKRKIQGIKNTRRITNAMKVVSAAKLRKAQELLYASRPYSEKLYELISDLAAHIDRESHPLLERREEKNVDLVIIT 84 (291)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccCCccCcccccCccceEEEEEEe
Confidence 6899999999999999999999999999999999999999999999999886632 0 11 2445699999
Q ss_pred CCCccccccchHHHHHHHHhhhc---c--c-------------------CceeeeeeccCCCCChHhhHHHHHHHHh---
Q 040116 112 SDKGLCGGINSTAVKISKSLHKL---N--S-------------------DIELIITELQKNPLNYTQVSVLADDILK--- 164 (298)
Q Consensus 112 SDrGLCG~fN~~vik~~~~~~~~---~--~-------------------~~~~~~~~~~~~~~~~~~a~~i~~~l~~--- 164 (298)
||||||||||++|+|.+.++++. . + .+...+.++++.|++|+.+..|++.+++
T Consensus 85 SDrGLCG~fNs~vik~~~~~~~~~~~~~~~~~l~~iG~Kg~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~l~~~~~ 164 (291)
T PRK14110 85 ADRGLAGAFNSNVIKTAERLIQEKQSEGVRVNLILIGRKGVQYFSKRGYNIIKSYEDVFRKEINFSVVKEVGGILASRYI 164 (291)
T ss_pred CCCCccccccHHHHHHHHHHHHHHHhCCCceEEEEehHHHHHHHHHcCCCceeeeccccCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999998842 1 1 1223344555556799999999987775
Q ss_pred cCCcceEEEEeeeccccccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 040116 165 NVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLEN 244 (298)
Q Consensus 165 ~~~~d~v~iiyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~alleS 244 (298)
.+++|+|+|+||+|+|.++|+|.++++||++...... .+.....|+||| ++++||++|+|.||++.||+|++||
T Consensus 165 ~~~~d~v~iiy~~f~s~~~~~~~~~~llP~~~~~~~~----~~~~~~~~~~ep--~~~~vl~~L~~~yl~~~ly~al~es 238 (291)
T PRK14110 165 EEETDAVYLINNEMITRATYKPKVRKFLPFEVEAQEK----KLDELSVYNIEV--SEEEFLDKLLQLYLNYQLYRALVES 238 (291)
T ss_pred cCCCCEEEEEecccccceeeeEEEEEecCCCcccccc----ccCCCCCeEecC--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999996321111 111223489999 9999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhhc
Q 040116 245 ACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 297 (298)
Q Consensus 245 ~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl~ 297 (298)
++|||++||+||++|||||+|++++|+++|||+||++||+||+|||+|++|++
T Consensus 239 ~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQ~~IT~Ei~EIv~Gaeal~ 291 (291)
T PRK14110 239 NAAEHFARMVAMDNATRNAGELIRKWTLIFNKARQEAITTELIDIVNAAEAMK 291 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999984
No 9
>PRK13426 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=4e-70 Score=510.84 Aligned_cols=249 Identities=31% Similarity=0.458 Sum_probs=212.7
Q ss_pred CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCCC---------C---CCCceEEEE
Q 040116 42 SISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPT---------V---DAKKNVIVT 109 (298)
Q Consensus 42 Masl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~~---------~---~~~k~~~Iv 109 (298)
|+++++||+||+||++|+|||+||||||++|+||+++++.+.+||++++.+++.++.. . +.++.+|||
T Consensus 1 Ma~l~~ik~RI~sv~~t~kIt~AMkmVAasklrka~~~~~~~~~Y~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~Iv 80 (291)
T PRK13426 1 MASLKEIKTRIASVQSTRKITSAMKMVASAKLHKAQGAIENMLPYQRKLNHILTNFLSADLDVESPFTVERPVKRVAIVV 80 (291)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccCCCCCcccccCCcceEEEEE
Confidence 8999999999999999999999999999999999999999999999999988876421 0 124456999
Q ss_pred EcCCCccccccchHHHHHHHHhhhc------cc-------------------CceeeeeeccCCCCChHhhHHHHHHHHh
Q 040116 110 ISSDKGLCGGINSTAVKISKSLHKL------NS-------------------DIELIITELQKNPLNYTQVSVLADDILK 164 (298)
Q Consensus 110 itSDrGLCG~fN~~vik~~~~~~~~------~~-------------------~~~~~~~~~~~~~~~~~~a~~i~~~l~~ 164 (298)
||||||||||||++|++.+.++++. .+ .+...+...++ .|+|+++..|++.+++
T Consensus 81 itSDrGLcG~fN~~v~~~~~~~~~~~~~~~~~~~~~~~vG~k~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~i~~~l~~ 159 (291)
T PRK13426 81 FSSNTSLCGGFNANIIKLLLQTIGEYRTLGQDNILIYPVGKKIEEAVKKLGFKVQGDYQTLAD-KPSYEEAAALAMRLME 159 (291)
T ss_pred EeCCCcccchhhHHHHHHHHHHHHHHhhcCCCceEEEEeeHHHHHHHHHcCCCceEeecccCC-CCCHHHHHHHHHHHHH
Confidence 9999999999999999999998742 11 12223334433 4589999999998876
Q ss_pred ---cCCcceEEEEeeeccccccccceeeeecCcchhhhhhhhCCCCCCC-CCccccCCCCHHHHHHHHHHHHHHHHHHHH
Q 040116 165 ---NVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGEL-DSYEIEGGETKGEILQNLAEFQFSCVMFNA 240 (298)
Q Consensus 165 ---~~~~d~v~iiyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~-~~~~~ep~~~~~~il~~L~~~yl~~~Ly~a 240 (298)
.+++|+|+|+||+|+|.++|+|+++++||++......... . ... +.|.||| ++++||+.|+|.||++.||+|
T Consensus 160 ~~~~~~~d~v~iiy~~f~s~~~q~~~~~~llPi~~~~~~~~~~-~-~~~~~~~~~Ep--~~e~il~~L~~~yl~~~ly~a 235 (291)
T PRK13426 160 LFLEGEIDKVELIYHHFKSMGVQVLTRETYLPIDLSQEKNAEH-A-GGVANDYIIEP--SADTVLNDLIPKLLSLKIYTA 235 (291)
T ss_pred HHhcCCCCEEEEEecccccccccceeEEEecCCCccccccccc-c-cCCCCceEecC--CHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999996322111100 0 011 2489999 999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhh
Q 040116 241 VLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASA 295 (298)
Q Consensus 241 lleS~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeA 295 (298)
++||++|||++||+||++|||||+|++++|+++|||+||++||+||+|||||++|
T Consensus 236 lles~aSE~aaRm~AM~~At~Na~e~i~~L~~~yNr~RQ~~IT~El~EIvsGaea 290 (291)
T PRK13426 236 LLDSNASEHAARMVAMQIATDNANELLQELTLQYNKSRQQAITNELLDIVGGSMA 290 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999999999999999999999999999999999999997
No 10
>PRK13422 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=1.1e-69 Score=509.31 Aligned_cols=251 Identities=32% Similarity=0.400 Sum_probs=210.3
Q ss_pred CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCC---------CC--C-CCceEEEE
Q 040116 42 SISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTP---------TV--D-AKKNVIVT 109 (298)
Q Consensus 42 Masl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~---------~~--~-~~k~~~Iv 109 (298)
|+++++||+||+||++|+|||+||||||++|+||+|+++...+||++.+.+++.++. .. . .++.++||
T Consensus 1 Ma~l~eik~RI~Sv~~t~kIT~AMkmVAasKlrka~~~~~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Iv 80 (298)
T PRK13422 1 MSNAREIRSKVQSVKNTQKITGAMELVAASKMRGAIVKMNNVRPYVESANTIIKNVTAASIDYPNPYLFDRDVKRVGYIV 80 (298)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcCCccCCcccccCCCceEEEEE
Confidence 899999999999999999999999999999999999999999999999988876632 11 1 23456999
Q ss_pred EcCCCccccccchHHHHHHHHhhhc---c--c--------------------Cceee--eeeccCCCCChHhhHHHHHHH
Q 040116 110 ISSDKGLCGGINSTAVKISKSLHKL---N--S--------------------DIELI--ITELQKNPLNYTQVSVLADDI 162 (298)
Q Consensus 110 itSDrGLCG~fN~~vik~~~~~~~~---~--~--------------------~~~~~--~~~~~~~~~~~~~a~~i~~~l 162 (298)
||||||||||||++|+|.+.+.++. . + ++... +...+ .+++|+++..+++.+
T Consensus 81 itSDrGLCG~fN~~v~k~~~~~~~~~~~~~~~~~l~~iG~K~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~ 159 (298)
T PRK13422 81 TSTDRGLCGGLNINLFKHVLKEIKNNIEDRVGVDVCVIGSKAENFFAKLKDVNIVATAHYNDKD-KEGSIRAIGGAVKVM 159 (298)
T ss_pred EeCCcccccchhHHHHHHHHHHHHHHHhCCCceEEEEEChhHHHHHHHhcCCCceeeeeeccCC-CCCCHHHHHHHHHHH
Confidence 9999999999999999999887742 1 1 00111 11111 356899999999887
Q ss_pred Hh---cCCcceEEEEeeeccccccccceeeeecCcchhh-hhh----hhCCCCCCCCCccccCCCCHHHHHHHHHHHHHH
Q 040116 163 LK---NVEFDALRIIYSKFHSVVSFLPTMATVLSPELVE-REA----ESGGKLGELDSYEIEGGETKGEILQNLAEFQFS 234 (298)
Q Consensus 163 ~~---~~~~d~v~iiyn~f~s~~~~~~~~~~lLP~~~~~-~~~----~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~ 234 (298)
++ .+++|+|+|+||+|+|.++|+|.++++||++... ... ... ......+|.||| ++++||++|+|.||+
T Consensus 160 ~~~~~~~~~d~v~iiy~~f~s~~~q~~~~~~llP~~~~~~~~~~~~~~~~-~~~~~~~~~~ep--~~~~il~~L~~~yl~ 236 (298)
T PRK13422 160 LDKFTAGEIDRLYMSSNQFVSTIKQRPRLQTLLPIQDIFSAEEIKANKEK-ATKGHWDYIYER--DIEEVLNALCIRYIE 236 (298)
T ss_pred HHHHHcCCCCEEEEEeccccCCcccceEEEEeeCCCcccchhhhcccccc-cccCCCCeEecC--CHHHHHHHHHHHHHH
Confidence 76 5799999999999999999999999999995211 010 000 000122489999 999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhh
Q 040116 235 CVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296 (298)
Q Consensus 235 ~~Ly~alleS~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl 296 (298)
+.||+|++||++|||++||+||++|||||+|++++|+++|||+||++||+||+|||+|++|.
T Consensus 237 ~~ly~al~eS~aSE~aaRm~AM~~At~Na~eli~~L~l~yNr~RQa~IT~Ei~EIvsGaeA~ 298 (298)
T PRK13422 237 AQVRGAILENAACEQAARMMAMKNATDNASDIIDQLKLDYNKVRQAMITQELAEICSGAAAV 298 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999984
No 11
>TIGR01146 ATPsyn_F1gamma ATP synthase, F1 gamma subunit. This model describes the ATP synthase gamma subunit in bacteria and its equivalents in organelles, namely, mitochondria and chloroplast. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involed in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The gamma subunit is the part of F1 cluster. Surrounding the gamma subunit in a cylinder-like structure are three alpha and three subunits in an alternating fashion. This is the central catalytic unit whose different conformations permit the binding of ADP and inorganic phosphate and release of ATP.
Probab=100.00 E-value=5.2e-69 Score=502.39 Aligned_cols=248 Identities=44% Similarity=0.596 Sum_probs=213.7
Q ss_pred CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCCCC-----------C-CCceEEEE
Q 040116 42 SISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV-----------D-AKKNVIVT 109 (298)
Q Consensus 42 Masl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~~~-----------~-~~k~~~Iv 109 (298)
|+++++||+||+||++|+|||+||||||++|+||+++++.+.++|++++.+++.++... . .++.+|||
T Consensus 1 M~~l~eik~RI~sv~~~~kIt~aMkmvA~sklrka~~~~~~~~~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iv 80 (287)
T TIGR01146 1 MATLKEIRTRIKSVKNTQKITKAMKMVAASKLRRAQERAEAARPYAEKIRAVLGNLATKLLNYDHPLLKSREVKKVGILV 80 (287)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccCCCCCccccccccCeEEEEE
Confidence 89999999999999999999999999999999999999999999999999888774311 1 13456899
Q ss_pred EcCCCccccccchHHHHHHHHhhhc----c-c-------------------CceeeeeeccCCCCChHhhHHHHHHHHh-
Q 040116 110 ISSDKGLCGGINSTAVKISKSLHKL----N-S-------------------DIELIITELQKNPLNYTQVSVLADDILK- 164 (298)
Q Consensus 110 itSDrGLCG~fN~~vik~~~~~~~~----~-~-------------------~~~~~~~~~~~~~~~~~~a~~i~~~l~~- 164 (298)
|||||||||+||++|+|.+.+.++. . + .+...+.+.+ .+++|+.+..|++.+++
T Consensus 81 itSDrGLCG~fN~~v~k~~~~~~~~~~~~~~~~~l~~vG~k~~~~l~~~~~~i~~~~~~~~-~~~~~~~~~~i~~~i~~~ 159 (287)
T TIGR01146 81 ITSDRGLCGGYNSNVLKRVRQRAKELKAAGKEVKLVVIGRKGKSFFKRRGDNIVLSITGLS-DQPTFEEASGIADKLLDA 159 (287)
T ss_pred EeCCCCccccccHHHHHHHHHHHHHHhccCCceEEEEeeHHHHHHHHHcCCCeeEeecccC-CCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998842 1 1 1122333343 35789999999998886
Q ss_pred --cCCcceEEEEeeeccccccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 040116 165 --NVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVL 242 (298)
Q Consensus 165 --~~~~d~v~iiyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~all 242 (298)
.+++|+|+|+||+|+|+++|+|.++++||++....... . ...+.|.||| ++++||++|+|.||++.||+|++
T Consensus 160 ~~~~~~d~v~viy~~f~~~~~~~~~~~~llP~~~~~~~~~---~-~~~~~~~~ep--~~~~vl~~l~~~yl~~~ly~a~~ 233 (287)
T TIGR01146 160 FASGEFDEVYIVYNKFVSSISQEPTVKQLLPLSEQGPDEG---F-KFGQDYIFEP--DEEEILDDLLPRYLESQIYGALL 233 (287)
T ss_pred HHcCCCCEEEEEecccccceeeeEEEEEeeCCCccccccc---c-cCCCCeEecC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999963221110 0 0112589999 99999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhh
Q 040116 243 ENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296 (298)
Q Consensus 243 eS~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl 296 (298)
||++|||++||+||++|||||+|++++|+++|||+||++||+||+|||+|++|+
T Consensus 234 es~asE~aaR~~AM~~At~Na~e~i~~L~~~yNr~RQ~~IT~El~EIvsGaeal 287 (287)
T TIGR01146 234 ESAASEQAARMTAMDNATDNAGDLIKKLTLSYNRARQAAITQELIEIVAGASAL 287 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999986
No 12
>PRK05621 F0F1 ATP synthase subunit gamma; Validated
Probab=100.00 E-value=2.1e-68 Score=497.52 Aligned_cols=246 Identities=41% Similarity=0.564 Sum_probs=214.2
Q ss_pred CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCCC--------C---CCCceEEEEE
Q 040116 42 SISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPT--------V---DAKKNVIVTI 110 (298)
Q Consensus 42 Masl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~~--------~---~~~k~~~Ivi 110 (298)
|+++++||+||+||++|+|||+||||||++|++|+++++.+.++|.+++.+++.++.. . +.++.+||||
T Consensus 1 M~~l~~lk~RI~sv~~i~kIt~aMkmvA~skl~k~~~~~~~~~~y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~ivi 80 (284)
T PRK05621 1 MASLKEIRRRIKSVKNTQKITKAMEMVAASKLRKAQERAEASRPYAEKIRKVISHLASASEYDHPLLVEREVKRVGYIVV 80 (284)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcCCCCCcccccCCCceEEEEEE
Confidence 8999999999999999999999999999999999999999999999999988876421 0 1244579999
Q ss_pred cCCCccccccchHHHHHHHHhhhcc-----c-------------------CceeeeeeccCCCCChHhhHHHHHHHHh--
Q 040116 111 SSDKGLCGGINSTAVKISKSLHKLN-----S-------------------DIELIITELQKNPLNYTQVSVLADDILK-- 164 (298)
Q Consensus 111 tSDrGLCG~fN~~vik~~~~~~~~~-----~-------------------~~~~~~~~~~~~~~~~~~a~~i~~~l~~-- 164 (298)
||||||||+||++|+|.+.+.++.. + ++...+.+.+ ..++|+.+..|++.+++
T Consensus 81 tSd~GLCG~fN~~v~k~~~~~~~~~~~~~~~~~l~~iG~k~~~~l~~~~~~i~~~~~~~~-~~~~~~~~~~i~~~i~~~~ 159 (284)
T PRK05621 81 TSDRGLCGGYNSNIIKKVLELIKELEAQGKEVKLIVIGRKGVDFFKRRGINVVAEYTGLG-DQPTFEEAIGIAKKLLDAY 159 (284)
T ss_pred eCCCcccchhhHHHHHHHHHHHHHHHhcCCceEEEEehHHHHHHHHHcCCCceeeeeccC-CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999987421 1 1223344443 34689999999988876
Q ss_pred -cCCcceEEEEeeeccccccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 040116 165 -NVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLE 243 (298)
Q Consensus 165 -~~~~d~v~iiyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~alle 243 (298)
.|++|+|+|+||+|+|+++|+|.++++||++....... ..+.|.||| +++++|++|+|.||++.||+|++|
T Consensus 160 ~~~~~~~i~viy~~f~~~~~~~~~~~~llP~~~~~~~~~------~~~~~~~ep--~~~~vl~~l~~~yl~~~l~~al~e 231 (284)
T PRK05621 160 DNGEFDELYIVYNKFVNTLSQEPTVEQLLPLEKEEEEEE------TSWDYEYEP--DAEEILDALLPRYVESQIYQALLE 231 (284)
T ss_pred HcCCCCEEEEEecccccceecceEEEEeCCCCccccccc------ccCCeeeCC--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999974322110 123589999 999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhh
Q 040116 244 NACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296 (298)
Q Consensus 244 S~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl 296 (298)
|++|||++||+||++|||||+|++++|+++|||+||++||+||+|||+|++|+
T Consensus 232 s~asE~aaR~~AM~~At~Na~e~i~~L~~~~Nr~RQ~~IT~El~EIvsGaeal 284 (284)
T PRK05621 232 NKASEQAARMTAMKNATDNAGDLIKKLTLVYNRARQAAITQEITEIVGGAEAL 284 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999986
No 13
>TIGR03323 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit gamma. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 gamma subunit of this apparent second ATP synthase.
Probab=100.00 E-value=6e-68 Score=494.83 Aligned_cols=247 Identities=23% Similarity=0.327 Sum_probs=203.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcC----CC-------CC---CCceEEEEEcCC
Q 040116 48 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDT----PT-------VD---AKKNVIVTISSD 113 (298)
Q Consensus 48 Ik~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l----~~-------~~---~~k~~~IvitSD 113 (298)
||+||+||++|+|||+||||||++|+||+|+++.+.+||++++.+++.++ +. .. .++.++||||||
T Consensus 1 ik~RI~Sv~~t~kITkAMkmVAasklrka~~~~~~~r~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~IvitSD 80 (285)
T TIGR03323 1 LRRKIESAADLQSVVRTMKALAAVSIRQYEDAVRALDDYYRTVELGLAVCLRRIPLAALSPSGPNQKVSGHTGAIVFGSD 80 (285)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhCCCcccccccccccCCCcEEEEEEECC
Confidence 68999999999999999999999999999999999999999999888763 21 11 244579999999
Q ss_pred CccccccchHHHHHHHHhhhcc--c--------C----c---eeeeeeccCCCCChHhhHHHHHHHHh-------cCCcc
Q 040116 114 KGLCGGINSTAVKISKSLHKLN--S--------D----I---ELIITELQKNPLNYTQVSVLADDILK-------NVEFD 169 (298)
Q Consensus 114 rGLCG~fN~~vik~~~~~~~~~--~--------~----~---~~~~~~~~~~~~~~~~a~~i~~~l~~-------~~~~d 169 (298)
||||||||++|+|.+.+.++.. + + + ...+......+++++++..+++.+++ .|++|
T Consensus 81 rGLCG~fN~~l~k~~~~~~~~~~~~~~~~~iG~K~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~d 160 (285)
T TIGR03323 81 QGLVGQFNEVILTFAAEELARLPGEATIWAVGERVASRLEDSGLTIGELFRLPNSVGAITPLVSELLIEVEARREQGQLA 160 (285)
T ss_pred CcCchHhHHHHHHHHHHHHHhccCCeEEEEECHHHHHHHHHcCCCceEeecCcCCHHHHHHHHHHHHHHHHhhhhcCCCc
Confidence 9999999999999999988531 1 0 0 00011111235578888888866654 57999
Q ss_pred eEEEEeeeccccccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 040116 170 ALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQ 249 (298)
Q Consensus 170 ~v~iiyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~alleS~aSE~ 249 (298)
+|+|+||+|+|.++|+|.++++||++...........|.....|+||| ++++||++|+|.||++.||+|++||++|||
T Consensus 161 ~v~iiY~~f~s~~~~~~~~~~llP~~~~~~~~~~~~~~~~~~~~~~ep--~~~~il~~L~~~yl~~~ly~alles~asE~ 238 (285)
T TIGR03323 161 ELYLFFNRPSSGGSYEPTCQRLLPLDETWQRQLATQQWPTKCLPELMG--EPEETFSALIREYLFVSLFRACAESLASEN 238 (285)
T ss_pred EEEEEecccccCcccceeeEEeeCCCccccccccccccccCCCceecC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999953111110000110112489999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhh
Q 040116 250 GARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296 (298)
Q Consensus 250 aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl 296 (298)
++||+||++|||||+|++++|+++|||+||++||+||+|||||++|+
T Consensus 239 aaRm~AM~~At~Na~e~i~~L~~~yNr~RQa~IT~Ei~EIvsGaeal 285 (285)
T TIGR03323 239 ASRLAAMQRAEKNIDELLDDLNRRFHRLRQSAIDEELFDVVSGFEAL 285 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999986
No 14
>KOG1531 consensus F0F1-type ATP synthase, gamma subunit [Energy production and conversion]
Probab=100.00 E-value=4.8e-66 Score=467.06 Aligned_cols=267 Identities=44% Similarity=0.608 Sum_probs=229.4
Q ss_pred HHhcchhcccccCCCcccccccccccCCCCCcccCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 040116 7 RREGRRFATPLISPRPIAAIRSPFLSEEDAPLGVRSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGL 86 (298)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Masl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y 86 (298)
.|.+.++ .|.++-.+.++. |.+| |++|++|+.||+||+||||||++|||||++|+++||+.+.+.|+|
T Consensus 5 ~~~~~~~-~p~~~~~~~~~~---------q~~~--~Atlkei~~RlkSVKNiQKITksMKmVAaaK~~rAer~~~~ar~~ 72 (304)
T KOG1531|consen 5 LRQATRL-LPSISASVSPAI---------QARG--FATLKEIRIRLKSVKNIQKITKSMKMVAAAKYARAERALKAARPY 72 (304)
T ss_pred hhccccc-cchhhhhccchh---------hhcc--cchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 4555555 676554444322 3344 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc----CCC---CCCCceEEEEEcCCCccccccchHHHHHHHHhhhcc---c--------------------
Q 040116 87 WQPFTALLGD----TPT---VDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLN---S-------------------- 136 (298)
Q Consensus 87 ~~~l~~~l~~----l~~---~~~~k~~~IvitSDrGLCG~fN~~vik~~~~~~~~~---~-------------------- 136 (298)
.++..+++.. .|. .+.||.++|++|||||||||+|+.|.|.++..+... .
T Consensus 73 ~~~~~~~~~~~d~~~p~~e~~~~kK~~lV~vtsDrGLCGgihssi~K~~r~~l~~~~~~~e~~vv~iGdK~ra~l~R~~~ 152 (304)
T KOG1531|consen 73 GEGAVEFFKNIDIDVPLTEEGEVKKVLLVAVTSDRGLCGGIHSSIAKKARRELNDLKGGKEVRVVIIGDKIRAILLRLHP 152 (304)
T ss_pred chHHHHHHhhccCCCCccccccccceEEEEEecCCccccchhHHHHHHHHHHHHhccCCCceEEEEEchhhhhheeecCc
Confidence 9999999984 442 245788999999999999999999999999988432 1
Q ss_pred -CceeeeeeccCCCCChHhhHHHHHHHHhcC-CcceEEEEeeeccccccccceeeeecCcchhhhhhhhCCCCCCCC-Cc
Q 040116 137 -DIELIITELQKNPLNYTQVSVLADDILKNV-EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELD-SY 213 (298)
Q Consensus 137 -~~~~~~~~~~~~~~~~~~a~~i~~~l~~~~-~~d~v~iiyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~-~~ 213 (298)
++...+.++|..||+|+++..+++.+++.+ +||++.|+||+|++.++++|...++||++..+... ... .+
T Consensus 153 ~~i~ls~~eig~~pptf~~asvia~~il~~~~e~d~~~ivyNkF~SvVs~e~~~~~il~l~~i~~s~-------~l~~~d 225 (304)
T KOG1531|consen 153 NSILLSINEIGRAPPTFEDASVIADEILLSGYEFDKGSIVYNKFKSVVSYETSEKPILPLETIEESE-------SLSCYD 225 (304)
T ss_pred hhhhhhHhhcCCCCCcHHHHHHHHHHHHhhhccccceEEEeecchhheeeccccccccCHHHhcccc-------cccchh
Confidence 234456788888999999999999999875 99999999999999999999999999998654322 122 12
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhh
Q 040116 214 EIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGA 293 (298)
Q Consensus 214 ~~ep~~~~~~il~~L~~~yl~~~Ly~alleS~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGa 293 (298)
.++ .+++..+.|+||..++|.++.||.+||+++||+||+||++||.||+++|++.|||.||+.||.||+|||+||
T Consensus 226 ~id-----dev~q~~~e~~la~~I~~am~Es~~SE~saRm~AMdnaSkNAgemi~kltl~yNRtRQA~IT~ELieIisGA 300 (304)
T KOG1531|consen 226 SID-----DEVLQSLMEYSLANQIYYAMKESATSELSARMNAMDNASKNAGEMIDKLTLTYNRTRQAVITNELIEIISGA 300 (304)
T ss_pred hhh-----HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCHHHHHHHHhhhhhhhcccchHHHHHHHHhhh
Confidence 233 588999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhc
Q 040116 294 SALE 297 (298)
Q Consensus 294 eAl~ 297 (298)
.||.
T Consensus 301 ~al~ 304 (304)
T KOG1531|consen 301 SALT 304 (304)
T ss_pred hhcC
Confidence 9973
No 15
>PF00700 Flagellin_C: Bacterial flagellin C-terminal helical region; InterPro: IPR001029 Bacterial flagella are responsible for motility and chemotaxis []. They comprise a basal body, a hook and a filament, the latter accounting for 98% of the mass []. Flagellin is the subunit protein that polymerises to form the flagellae [], the subunits being transported through the centre of the filament to the tip, where they then polymerise []. Both the N- and C- termini of the subunit protein, which are alpha-helical in structure [], are required to mediate polymerisation. Although no export or assembly consensus sequences have been identified, Ala, Val, Leu, Ile, Gly, Ser, Thr, Asn, Gln and Asp tend to make up around 90% of the sequence, Cys and Trp being absent []. This entry represents the N and C termini that come together to form the D0 and D1 structural domains []. These domains are responsible for flagellin's ability to polymerise into a filament. ; GO: 0005198 structural molecule activity, 0001539 ciliary or flagellar motility, 0009288 bacterial-type flagellum; PDB: 1ORY_B 3V47_C 1IO1_A 1UCU_A 3A5X_A 3K8V_A 2ZBI_B 3K8W_A.
Probab=75.79 E-value=22 Score=26.68 Aligned_cols=53 Identities=15% Similarity=0.304 Sum_probs=48.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhh
Q 040116 242 LENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGAS 294 (298)
Q Consensus 242 leS~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGae 294 (298)
+.+..++.++|...++.+.++.+.....++-...+.+-.-+++++.++....-
T Consensus 11 v~~~~a~lGa~~~~l~~~~~~~~~~~~~l~~~~s~i~d~D~a~~~~~l~~~~~ 63 (86)
T PF00700_consen 11 VSSARAQLGARQNRLESAKDRLSNQSENLTASLSNIEDADMAEAITNLTQAQT 63 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999876543
No 16
>PRK04456 acetyl-CoA decarbonylase/synthase complex subunit beta; Reviewed
Probab=55.72 E-value=20 Score=35.83 Aligned_cols=27 Identities=26% Similarity=0.520 Sum_probs=19.4
Q ss_pred eEEEEEcCCC-ccccccchHHHHHHHHh
Q 040116 105 NVIVTISSDK-GLCGGINSTAVKISKSL 131 (298)
Q Consensus 105 ~~~IvitSDr-GLCG~fN~~vik~~~~~ 131 (298)
+=+-|||.|| ||||++|=-=-|++.+.
T Consensus 200 ~hVCvvtPeR~~lCGaisW~D~rAa~~i 227 (463)
T PRK04456 200 THVCVITPDRPSLCGAINWFDGRAAAKI 227 (463)
T ss_pred ceeEEECCCCcccccccchhhhhhhhhc
Confidence 3456789998 99999997555555443
No 17
>TIGR00316 cdhC CO dehydrogenase/CO-methylating acetyl-CoA synthase complex, beta subunit. Nomenclature follows the description for Methanosarcina thermophila. The CO-methylating acetyl-CoA synthase is considered the defining enzyme of the Wood-Ljungdahl pathway, used for acetate catabolism by sulfate reducing bacteria but for acetate biosynthesis by acetogenic bacteria such as oorella thermoacetica (f. Clostridium thermoaceticum).
Probab=52.22 E-value=26 Score=35.10 Aligned_cols=26 Identities=23% Similarity=0.558 Sum_probs=18.9
Q ss_pred EEEEEcCCC-ccccccchHHHHHHHHh
Q 040116 106 VIVTISSDK-GLCGGINSTAVKISKSL 131 (298)
Q Consensus 106 ~~IvitSDr-GLCG~fN~~vik~~~~~ 131 (298)
=+-|||.|| ||||++|=-=-|++.+.
T Consensus 198 HVCvvtPeR~~lCGaisW~D~rAa~~i 224 (458)
T TIGR00316 198 HVCIVTPDRPSLCGAINWFDARAAAKI 224 (458)
T ss_pred eeEEECCCCcccccccchhhhhhhhhc
Confidence 456789998 99999997555555443
No 18
>smart00216 VWD von Willebrand factor (vWF) type D domain. Von Willebrand factor contains several type D domains: D1 and D2 are present within the N-terminal propeptide whereas the remaining D domains are required for multimerisation.
Probab=42.46 E-value=7.8 Score=32.44 Aligned_cols=13 Identities=31% Similarity=0.774 Sum_probs=10.4
Q ss_pred CCCccccccchHH
Q 040116 112 SDKGLCGGINSTA 124 (298)
Q Consensus 112 SDrGLCG~fN~~v 124 (298)
.=+||||-||.+-
T Consensus 141 ~~~GLCGn~ng~~ 153 (162)
T smart00216 141 KTCGLCGNFDGEP 153 (162)
T ss_pred CeeEccCCCCCCc
Confidence 3479999999864
No 19
>PF03598 CdhC: CO dehydrogenase/acetyl-CoA synthase complex beta subunit; InterPro: IPR004461 The carbon monoxide dehydrogenase alpha subunit (1.2.99.2 from EC) catalyses the interconversion of CO and CO2 and the synthesis of acteyl-coA from the methylated corrinoid/iron sulphur protein, CO and CoA. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.; GO: 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0006084 acetyl-CoA metabolic process; PDB: 2Z8Y_O 1MJG_N 3GIT_A 3S2X_B 3I01_O 3I04_N 1OAO_C 1RU3_A.
Probab=42.01 E-value=14 Score=36.58 Aligned_cols=27 Identities=22% Similarity=0.564 Sum_probs=16.6
Q ss_pred EEEEEcCCC-ccccccchHHHHHHHHhh
Q 040116 106 VIVTISSDK-GLCGGINSTAVKISKSLH 132 (298)
Q Consensus 106 ~~IvitSDr-GLCG~fN~~vik~~~~~~ 132 (298)
=+-|||.|| ||||++|=-=.|++.+.-
T Consensus 199 hVCvvtPeR~~lCGaisWlDakAa~eid 226 (411)
T PF03598_consen 199 HVCVVTPERPGLCGAISWLDAKAAYEID 226 (411)
T ss_dssp --EEEBTTB--TTSS--HHHHHHHHHHS
T ss_pred eeEEECCCCcccccccchhhhhhhhccC
Confidence 356789998 999999986666666543
No 20
>PF00094 VWD: von Willebrand factor type D domain; InterPro: IPR001846 A family of growth regulators (originally called cef10, connective tissue growth factor, fisp-12, cyr61, or, alternatively, beta IG-M1 and beta IG-M2), all belong to immediate-early genes expressed after induction by growth factors or certain oncogenes. Sequence analysis of this family revealed the presence of four distinct modules. Each module has homologues in other extracellular mosaic proteins such as Von Willebrand factor, slit, thrombospondins, fibrillar collagens, IGF-binding proteins and mucins. Classification and analysis of these modules suggests the location of binding regions and, by analogy to better characterised modules in other proteins, sheds some light onto the structure of this new family []. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. One of the functions of von Willebrand factor (vWF) is to serve as a carrier of clotting factor VIII (FVIII). The native conformation of the D' domain of vWF is not only required for factor VIII (FVIII) binding but also for normal multimerisation and optimal secretion. The interaction between blood clotting factor VIII and VWF is necessary for normal survival of blood clotting factor VIII in blood circulation. The VWFD domain is a highly structured region, in which the first conserved Cys has been found to form a disulphide bridge with the second conserved one [].
Probab=39.25 E-value=10 Score=31.06 Aligned_cols=13 Identities=31% Similarity=0.774 Sum_probs=10.2
Q ss_pred CCCccccccchHH
Q 040116 112 SDKGLCGGINSTA 124 (298)
Q Consensus 112 SDrGLCG~fN~~v 124 (298)
.=.||||.||.+-
T Consensus 137 ~t~GLCG~~dg~~ 149 (159)
T PF00094_consen 137 KTCGLCGNFDGEP 149 (159)
T ss_pred ccccccCCCCCCc
Confidence 3469999999864
No 21
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.19 E-value=72 Score=29.17 Aligned_cols=41 Identities=12% Similarity=0.210 Sum_probs=36.1
Q ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 040116 44 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGL 86 (298)
Q Consensus 44 sl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y 86 (298)
++.+|...|++|++ .|++.|++-+.++.++++++......|
T Consensus 154 kl~di~~~i~~i~~--nl~k~~~~q~~lRa~EaRDr~L~esNf 194 (236)
T KOG3287|consen 154 KLDDIEDSIGTIKN--NLNKMWQYQALLRAREARDRNLQESNF 194 (236)
T ss_pred cHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhHHHHhccc
Confidence 67899999999986 799999999999999999988766554
No 22
>PF00884 Sulfatase: Sulfatase; InterPro: IPR000917 Sulphatases 3.1.6. from EC are enzymes that hydrolyze various sulphate esters. The sequence of different types of sulphatases are available and have shown to be structurally related [, , ]; these include: arylsulphatase A 3.1.6.8 from EC (ASA), a lysosomal enzyme which hydrolyses cerebroside sulphate; arylsulphatase B 3.1.6.12 from EC (ASB), which hydrolyses the sulphate ester group from N-acetylgalactosamine 4-sulphate residues of dermatan sulphate; arylsulphatase C (ASD) and E (ASE); steryl-sulphatase 3.1.6.2 from EC (STS), a membrane bound microsomal enzyme which hydrolyses 3-beta-hydroxy steroid sulphates; iduronate 2-sulphatase precursor 3.1.6.13 from EC (IDS), a lysosomal enzyme that hydrolyses the 2-sulphate groups from non-reducing-terminal iduronic acid residues in dermatan sulphate and heparan sulphate; N-acetylgalactosamine-6-sulphatase 3.1.6.4 from EC, which hydrolyses the 6-sulphate groups of the N-acetyl-d-galactosamine 6-sulphate units of chondroitin sulphate and the D-galactose 6-sulphate units of keratan sulphate; glucosamine-6-sulphatase 3.1.6.14 from EC (G6S), which hydrolyses the N-acetyl-D-glucosamine 6-sulphate units of heparan sulphate and keratan sulphate; N-sulphoglucosamine sulphohydrolase 3.10.1.1 from EC (sulphamidase), the lysosomal enzyme that catalyses the hydrolysis of N-sulpho-d-glucosamine into glucosamine and sulphate; sea urchin embryo arylsulphatase 3.1.6.1 from EC; green algae arylsulphatase 3.1.6.1 from EC, which plays an important role in the mineralisation of sulphates; and arylsulphatase 3.1.6.1 from EC from Escherichia coli (aslA), Klebsiella aerogenes (gene atsA) and Pseudomonas aeruginosa (gene atsA). ; GO: 0008484 sulfuric ester hydrolase activity, 0008152 metabolic process; PDB: 1P49_A 1FSU_A 2QZU_A 2W5Q_A 2W5T_A 2W5S_A 2W5R_A 3LXQ_A 1HDH_B 1E33_P ....
Probab=36.42 E-value=28 Score=31.31 Aligned_cols=45 Identities=20% Similarity=0.143 Sum_probs=25.5
Q ss_pred HHHHHHHHHhchhhHHHHHHHHhcCCCCCCCceEEEEEcCCCcccccc
Q 040116 73 LRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGI 120 (298)
Q Consensus 73 lrka~~~l~~~r~Y~~~l~~~l~~l~~~~~~k~~~IvitSDrGLCG~f 120 (298)
.+.+...+.........+-+.+++ ....++.+|||+||+|--.+-
T Consensus 210 ~~~Y~~~i~~~D~~l~~~~~~l~~---~~~~d~TiiiitsDHG~~~~e 254 (308)
T PF00884_consen 210 RNNYLNAIAYVDDQLGRFIEYLKE---QGLYDNTIIIITSDHGESFGE 254 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---TTCGGGEEEEEEESSSSSTGG
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhh---cCCcccceeEEecCcCccccc
Confidence 334444444444334444444432 334566899999999986543
No 23
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=36.30 E-value=12 Score=34.69 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=12.2
Q ss_pred cCCCccccccchHH
Q 040116 111 SSDKGLCGGINSTA 124 (298)
Q Consensus 111 tSDrGLCG~fN~~v 124 (298)
-||-|+||+||+-|
T Consensus 194 iTDvGMtG~~dSvi 207 (266)
T COG1692 194 ITDVGMTGPYDSVI 207 (266)
T ss_pred EecCcccccccccc
Confidence 38999999999865
No 24
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=36.06 E-value=1.8e+02 Score=21.67 Aligned_cols=66 Identities=21% Similarity=0.220 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 040116 222 GEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEI 289 (298)
Q Consensus 222 ~~il~~L~~~yl~~~Ly~alleS~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EI 289 (298)
++|+.-++.+=+++.||-.|+=...=++.-|-.-++.=.++-.++|++++-.+|... .|-..+.||
T Consensus 3 ~ei~k~~~sQG~fA~LFv~Ll~yvlK~~~~re~~~~~RE~kyq~~I~~lte~~~~~~--~~~~dv~ei 68 (71)
T PF10960_consen 3 EEIIKLALSQGIFAVLFVWLLFYVLKENKKREEKQEEREEKYQEQIEKLTEKLNVIE--EIKEDVKEI 68 (71)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 578888899999999999999999999997777777777888889999888887764 344444443
No 25
>PRK09529 bifunctional acetyl-CoA decarbonylase/synthase complex subunit alpha/beta; Reviewed
Probab=35.83 E-value=63 Score=34.22 Aligned_cols=26 Identities=19% Similarity=0.568 Sum_probs=18.8
Q ss_pred EEEEEcCCC-ccccccchHHHHHHHHh
Q 040116 106 VIVTISSDK-GLCGGINSTAVKISKSL 131 (298)
Q Consensus 106 ~~IvitSDr-GLCG~fN~~vik~~~~~ 131 (298)
=+-|||.|| ||||++|=-=-|.+.+.
T Consensus 499 hVCvvtPeR~~lCGaiswlD~kaa~ei 525 (711)
T PRK09529 499 HVCVVTPERPGLCGAVSWLDAKAAYEI 525 (711)
T ss_pred eeEEECCCCCccccccchhhhhhhhcc
Confidence 356788998 99999997555555443
No 26
>PF02870 Methyltransf_1N: 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain; InterPro: IPR008332 Synonym(s): 6-O-methylguanine-DNA methyltransferase, O-6-methylguanine-DNA-alkyltransferase The repair of DNA containing O6-alkylated guanine is carried out by DNA-[protein]-cysteine S-methyltransferase (2.1.1.63 from EC). The major mutagenic and carcinogenic effect of methylating agents in DNA is the formation of O6-alkylguanine. The alkyl group at the O-6 position is transferred to a cysteine residue in the enzyme []. This is a suicide reaction since the enzyme is irreversibly inactivated and the methylated protein accumulates as a dead-end product. Most, but not all of the methyltransferases are also able to repair O-4-methylthymine. DNA-[protein]-cysteine S-methyltransferases are widely distributed and are found in various prokaryotic and eukaryotic sources []. This group of proteins are characterised by having an N-terminal ribonuclease-like domain associated with 6-O-methylguanine DNA methyltransferase activity (IPR001497 from INTERPRO).; GO: 0003908 methylated-DNA-[protein]-cysteine S-methyltransferase activity, 0006281 DNA repair; PDB: 1SFE_A 1T39_B 1T38_A 1EH7_A 1EH6_A 1YFH_C 1EH8_A 1QNT_A.
Probab=35.32 E-value=17 Score=26.73 Aligned_cols=18 Identities=33% Similarity=0.761 Sum_probs=13.1
Q ss_pred EEEEEcCCCcccc-ccchH
Q 040116 106 VIVTISSDKGLCG-GINST 123 (298)
Q Consensus 106 ~~IvitSDrGLCG-~fN~~ 123 (298)
-+.++++|+|||| +|..+
T Consensus 13 ~l~l~a~e~gL~~i~f~~~ 31 (77)
T PF02870_consen 13 PLLLAASEKGLCGIDFEDQ 31 (77)
T ss_dssp EEEEEEETTCEEEEEEEC-
T ss_pred EEEEEEECCeEEEEEECCC
Confidence 4688999999998 44443
No 27
>TIGR03417 chol_sulfatase choline-sulfatase.
Probab=33.43 E-value=48 Score=33.42 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=18.7
Q ss_pred HHHHHhcCCCCCCCceEEEEEcCCCccccc
Q 040116 90 FTALLGDTPTVDAKKNVIVTISSDKGLCGG 119 (298)
Q Consensus 90 l~~~l~~l~~~~~~k~~~IvitSDrGLCG~ 119 (298)
|.+++..|.....-.+.+||||||+|-+.|
T Consensus 266 iG~il~~L~~~g~~dnTivvf~sDHG~~~G 295 (500)
T TIGR03417 266 IGELLQTLEETRQADDTIVLFTSDHGDMLG 295 (500)
T ss_pred HHHHHHHHHhcCCcCCcEEEEECCCchhhc
Confidence 444444443333344578999999997644
No 28
>COG1614 CdhC CO dehydrogenase/acetyl-CoA synthase beta subunit [Energy production and conversion]
Probab=28.54 E-value=89 Score=30.53 Aligned_cols=27 Identities=22% Similarity=0.509 Sum_probs=19.4
Q ss_pred ceEEEEEcCCC-ccccccchHHHHHHHH
Q 040116 104 KNVIVTISSDK-GLCGGINSTAVKISKS 130 (298)
Q Consensus 104 k~~~IvitSDr-GLCG~fN~~vik~~~~ 130 (298)
.+-+-|+|.|| .|||+.|--=.+++-+
T Consensus 198 PThVCvvtPDRpsLCGaInw~D~rAAaK 225 (470)
T COG1614 198 PTHVCVVTPDRPSLCGAINWFDARAAAK 225 (470)
T ss_pred CceeEEecCCcccccccceeecchhhhc
Confidence 34566789998 7999999755555544
No 29
>PF07341 DUF1473: Protein of unknown function (DUF1473); InterPro: IPR009941 This entry represents a family of hypothetical proteins of around 150 residues in length found in Borrelia species. The function of this family is unknown.
Probab=25.35 E-value=2.4e+02 Score=24.10 Aligned_cols=74 Identities=18% Similarity=0.207 Sum_probs=53.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCC--------C--CCCCceEEEEEcCCC
Q 040116 45 TQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTP--------T--VDAKKNVIVTISSDK 114 (298)
Q Consensus 45 l~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~--------~--~~~~k~~~IvitSDr 114 (298)
-.++..+++-++-+++||+-| |+..=+-..-..+.+-|.|.+-.+..+-.+. . .+-+++.+|-+.+=.
T Consensus 36 ~d~li~kLN~~~~Lk~IT~lM--Is~~FlDEFY~ILn~nR~y~s~YK~~L~~IlysiQf~~f~~~~~fkkP~LvYis~y~ 113 (163)
T PF07341_consen 36 RDELIDKLNNLQYLKEITSLM--ISPGFLDEFYEILNQNREYSSLYKYYLPTILYSIQFSTFELDEDFKKPSLVYISEYE 113 (163)
T ss_pred chHHHHHhhhHHHHHHHHHHH--cCHhHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhheeeecccCCCCcEEEehhhh
Confidence 356789999999999999965 8888888888888888888876665554321 1 123777888777655
Q ss_pred cccccc
Q 040116 115 GLCGGI 120 (298)
Q Consensus 115 GLCG~f 120 (298)
-=.|+|
T Consensus 114 dn~GDf 119 (163)
T PF07341_consen 114 DNVGDF 119 (163)
T ss_pred cCCCCE
Confidence 555554
No 30
>PRK13759 arylsulfatase; Provisional
Probab=24.34 E-value=95 Score=31.17 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=18.0
Q ss_pred HHHHHhcCCCCCCCceEEEEEcCCCccc
Q 040116 90 FTALLGDTPTVDAKKNVIVTISSDKGLC 117 (298)
Q Consensus 90 l~~~l~~l~~~~~~k~~~IvitSDrGLC 117 (298)
+.+++..+.......+.+|||+||+|-.
T Consensus 281 iG~l~~~l~~~g~~dnTiiv~tsDHG~~ 308 (485)
T PRK13759 281 IGRFLQALKEFGLLDNTIILFVSDHGDM 308 (485)
T ss_pred HHHHHHHHHhcCCccCeEEEEECCCccc
Confidence 4445544433344456789999999964
No 31
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=23.74 E-value=4.2e+02 Score=25.88 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=43.0
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhh
Q 040116 224 ILQNL--AEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGA 293 (298)
Q Consensus 224 il~~L--~~~yl~~~Ly~alleS~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGa 293 (298)
.++.+ -+.||+.++=..+.+ -.+...++..++..-+.+..-+.+++.++| .||+||.++=.-.
T Consensus 253 ~lekI~sREk~iN~qle~l~~e--Yr~~~~~ls~~~~~y~~~s~~V~~~t~~L~-----~IseeLe~vK~em 317 (359)
T PF10498_consen 253 TLEKIESREKYINNQLEPLIQE--YRSAQDELSEVQEKYKQASEGVSERTRELA-----EISEELEQVKQEM 317 (359)
T ss_pred HHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 34444 467888776665555 455567777777777778888888888774 4888887775443
No 32
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=23.20 E-value=4.3e+02 Score=23.57 Aligned_cols=71 Identities=11% Similarity=0.168 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHH--HHH-HHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 040116 220 TKGEILQNLAEFQFSCVMFNA--VLE-NACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEII 290 (298)
Q Consensus 220 ~~~~il~~L~~~yl~~~Ly~a--lle-S~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIv 290 (298)
+-..+.+.++..-.....+.. ..+ ....|.-.|+..++.-.+.++.+-.++..+-+-.||-+|-.||-++-
T Consensus 145 ~l~~lY~~l~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~i~~L~kei~~L~~~~~kEkq~nrkveln~elk~l~ 218 (221)
T PF14335_consen 145 NLDALYESLVNQIIALNAAPNTGEFEKTSLWERIERLEQIEKLEKEIAKLKKKIKKEKQFNRKVELNTELKKLK 218 (221)
T ss_pred cHHHHHHHHHHHHhcchhhhhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 334555555544444333331 001 16788899999999999999999999999999999999999998763
No 33
>PF07640 QPP: QPP; InterPro: IPR011507 These Rhodopirellula baltica proteins share a highly conserved sequence, centred around an invariant QPP motif, at their N termini. This motif may represent an export signal.
Probab=22.98 E-value=27 Score=22.75 Aligned_cols=10 Identities=50% Similarity=0.933 Sum_probs=7.1
Q ss_pred cccccchHHH
Q 040116 116 LCGGINSTAV 125 (298)
Q Consensus 116 LCG~fN~~vi 125 (298)
=||+||.+=.
T Consensus 10 RcGSiNQQp~ 19 (36)
T PF07640_consen 10 RCGSINQQPV 19 (36)
T ss_pred cccccccCCC
Confidence 3999997543
No 34
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=22.66 E-value=33 Score=32.06 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=14.5
Q ss_pred CceEEEEEcCCCccccccchHH
Q 040116 103 KKNVIVTISSDKGLCGGINSTA 124 (298)
Q Consensus 103 ~k~~~IvitSDrGLCG~fN~~v 124 (298)
+..++| ||-|+||+||+-|
T Consensus 190 ~gtayi---tD~Gm~G~~~svi 208 (266)
T TIGR00282 190 KGTAYI---TDVGMTGPFGSVI 208 (266)
T ss_pred CCCEEE---ecCCcccCcccCc
Confidence 344554 8999999999855
No 35
>COG3404 Methenyl tetrahydrofolate cyclohydrolase [Amino acid transport and metabolism]
Probab=22.36 E-value=3.2e+02 Score=24.68 Aligned_cols=45 Identities=24% Similarity=0.377 Sum_probs=32.4
Q ss_pred CHHHHHHHH--HHHHHHHH------HHHHHHHHH------HhHHHHHHHHHHHHHHhHH
Q 040116 220 TKGEILQNL--AEFQFSCV------MFNAVLENA------CSEQGARMSAMDSSSRNAG 264 (298)
Q Consensus 220 ~~~~il~~L--~~~yl~~~------Ly~alleS~------aSE~aaRm~AM~~At~Na~ 264 (298)
+++.+++.+ +..+|... -|..++.++ =.|.++|..+|++|.+-+-
T Consensus 58 e~k~i~~~~~~ik~~l~~lidkD~eAf~~im~AyKlPK~teEEK~~R~~~lQ~Alk~Aa 116 (208)
T COG3404 58 EMKEILEELQKIKAELLALIDKDEEAFNLIMAAYKLPKSTEEEKAARRKALQNALKEAA 116 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 456777776 45555543 366777666 5788999999999988664
No 36
>PF08665 PglZ: PglZ domain; InterPro: IPR013973 This entry is a member of the Alkaline phosphatase clan.
Probab=22.33 E-value=45 Score=28.77 Aligned_cols=11 Identities=45% Similarity=0.625 Sum_probs=9.5
Q ss_pred EEEEEcCCCcc
Q 040116 106 VIVTISSDKGL 116 (298)
Q Consensus 106 ~~IvitSDrGL 116 (298)
.-|+||||+|+
T Consensus 164 ~~V~ITsDHG~ 174 (181)
T PF08665_consen 164 RRVVITSDHGF 174 (181)
T ss_pred ceEEEECCCCC
Confidence 35999999997
No 37
>PRK08073 flgL flagellar hook-associated protein FlgL; Validated
Probab=21.67 E-value=2.5e+02 Score=26.07 Aligned_cols=51 Identities=12% Similarity=0.123 Sum_probs=45.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhh
Q 040116 242 LENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISG 292 (298)
Q Consensus 242 leS~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsG 292 (298)
+-...++.++|..-++.+.++.++....|+...++..-.-+.+++.|...-
T Consensus 214 v~~~~a~~Ga~~nrle~~~~~~~~~~~~l~~~~s~i~d~D~a~a~~~l~~~ 264 (287)
T PRK08073 214 IINRTTEVGGTMNTVETFKTILSEQNLALQENRKEIEDVDLAVAISDLAYI 264 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 345678999999999999999999999999999999999999999988654
No 38
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=20.92 E-value=2.6e+02 Score=18.66 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHH
Q 040116 264 GEMLDRLTLTYNRTRQASITTELIEI 289 (298)
Q Consensus 264 ~e~i~~L~l~yNr~RQa~IT~EL~EI 289 (298)
+|++++...+.++..++-|..-..|+
T Consensus 10 qEIL~EvrkEl~K~K~EIIeA~~~eL 35 (40)
T PF08776_consen 10 QEILEEVRKELQKVKEEIIEAIRQEL 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999998766555554
No 39
>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion]
Probab=20.34 E-value=2.7e+02 Score=26.80 Aligned_cols=49 Identities=24% Similarity=0.299 Sum_probs=45.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 040116 242 LENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEII 290 (298)
Q Consensus 242 leS~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIv 290 (298)
+.+..++.+++..-++.+.+|.+.+.+.|+....+.|-.-.++|+.+..
T Consensus 284 i~~~ra~lGa~qnrl~~~~~~l~~~~~nl~~~~s~i~D~D~aee~t~l~ 332 (360)
T COG1344 284 ITSARAELGAVQNRLESAINNLSNQSDNLTAAESRIVDVDMAEESTELT 332 (360)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999998864
Done!