Query 040116
Match_columns 298
No_of_seqs 140 out of 1069
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 08:01:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040116.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040116hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oaa_G ATP synthase gamma chai 100.0 5.3E-75 1.8E-79 541.1 30.7 247 43-296 1-286 (286)
2 3oee_G ATP synthase subunit ga 100.0 4.9E-75 1.7E-79 539.2 29.2 245 43-297 1-278 (278)
3 2xok_G ATP synthase subunit ga 100.0 4.4E-74 1.5E-78 539.4 27.3 248 40-297 31-311 (311)
4 2ck3_G ATP synthase subunit ga 100.0 3.4E-74 1.2E-78 531.9 16.4 243 43-296 1-272 (272)
5 2qe7_G ATP synthase subunit ga 100.0 3.6E-74 1.2E-78 535.5 -6.2 247 42-297 1-286 (286)
6 1fs0_G ATP synthase gamma subu 100.0 4.4E-50 1.5E-54 362.7 18.5 191 60-257 1-230 (230)
7 1qw2_A Conserved hypothetical 51.3 7.5 0.00026 30.1 2.1 24 105-128 30-55 (102)
8 2xus_A Breast cancer metastasi 44.0 62 0.0021 21.6 5.5 42 251-293 7-48 (49)
9 3b5q_A Putative sulfatase YIDJ 42.3 20 0.00069 34.2 4.1 30 90-119 261-290 (482)
10 2qzu_A Putative sulfatase YIDJ 36.7 21 0.00073 33.9 3.3 30 90-119 290-319 (491)
11 3mtu_A Tropomyosin alpha-1 cha 35.8 61 0.0021 23.3 4.9 32 251-282 9-44 (75)
12 2vqr_A Putative sulfatase; pho 33.6 23 0.00079 34.2 3.0 30 90-119 330-359 (543)
13 2gso_A Phosphodiesterase-nucle 32.8 17 0.00058 33.4 1.8 17 103-119 208-224 (393)
14 1oao_C CODH, carbon monoxide d 32.3 44 0.0015 34.0 4.7 26 107-132 517-543 (729)
15 1hdh_A Arylsulfatase; hydrolas 31.9 25 0.00087 33.8 3.0 28 90-117 294-321 (536)
16 3u7r_A NADPH-dependent FMN red 30.9 2.1E+02 0.0071 23.7 8.3 29 104-134 3-31 (190)
17 3a52_A Cold-active alkaline ph 30.0 23 0.0008 33.6 2.3 40 74-116 233-272 (400)
18 3fwb_B Nuclear mRNA export pro 25.9 1.6E+02 0.0054 20.0 6.1 33 223-255 13-45 (55)
19 3ryc_E Stathmin-4; alpha-tubul 25.0 2.8E+02 0.0094 22.5 7.8 59 8-71 13-73 (143)
20 1fsu_A N-acetylgalactosamine-4 23.3 36 0.0012 32.3 2.3 29 90-118 236-264 (492)
21 3ed4_A Arylsulfatase; structur 23.2 35 0.0012 32.3 2.2 26 91-116 282-307 (502)
22 2w8d_A Processed glycerol phos 23.2 46 0.0016 31.2 3.0 29 90-118 235-263 (436)
23 2da7_A Zinc finger homeobox pr 22.9 1.3E+02 0.0046 21.5 4.7 40 111-162 1-42 (71)
24 3ono_A Ribose/galactose isomer 22.0 3.3E+02 0.011 23.5 7.9 61 107-171 5-70 (214)
25 2w5q_A Processed glycerol phos 21.6 43 0.0015 31.2 2.4 33 90-122 235-268 (424)
26 3lxq_A Uncharacterized protein 21.4 42 0.0014 31.4 2.3 29 89-117 281-309 (450)
27 3m7v_A Phosphopentomutase; str 20.9 79 0.0027 28.1 4.0 24 89-117 322-345 (413)
28 2oqq_A Transcription factor HY 20.3 1.8E+02 0.0062 18.6 5.8 36 245-280 4-39 (42)
No 1
>3oaa_G ATP synthase gamma chain; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1}
Probab=100.00 E-value=5.3e-75 Score=541.06 Aligned_cols=247 Identities=33% Similarity=0.465 Sum_probs=215.3
Q ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcC---------CC---CCCCceEEEEE
Q 040116 43 ISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDT---------PT---VDAKKNVIVTI 110 (298)
Q Consensus 43 asl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l---------~~---~~~~k~~~Ivi 110 (298)
+++++||+||+||++|+|||+||||||++|+||+|+++.+.|||++++.+++.++ |. .+.++.++|||
T Consensus 1 a~lkeIk~RI~Svk~t~kITkAMkmVAaaKlrkaq~~~~~~rpY~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~Ivi 80 (286)
T 3oaa_G 1 AGAKEIRSKIASVQNTQKITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGNLEYKHPYLEDRDVKRVGYLVV 80 (286)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTCCSSCSCCCCSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhCccccCcccccCCCCcEEEEEE
Confidence 5899999999999999999999999999999999999999999999999888754 11 12466799999
Q ss_pred cCCCccccccchHHHHHHHHhhhc---cc---------------------CceeeeeeccCCCCChHhhHHHHHHHHh--
Q 040116 111 SSDKGLCGGINSTAVKISKSLHKL---NS---------------------DIELIITELQKNPLNYTQVSVLADDILK-- 164 (298)
Q Consensus 111 tSDrGLCG~fN~~vik~~~~~~~~---~~---------------------~~~~~~~~~~~~~~~~~~a~~i~~~l~~-- 164 (298)
|||||||||||+||+|.+.+.++. .. ++...+.+++ +.|+|+++..+++.+++
T Consensus 81 tSDrGLcG~fN~ni~k~~~~~i~~~~~~~~~~~l~~vG~Kg~~~~~~~~~~i~~~~~~~~-~~p~~~~~~~i~~~~~~~~ 159 (286)
T 3oaa_G 81 STDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMG-DNPSLSELIGPVKVMLQAY 159 (286)
T ss_dssp CCSCCCSTTHHHHHHHHHHHHHHHHHTTTCEEEEEEESHHHHHHHHHHCCCEEEEECCCT-TCCCHHHHHHHHHHHHHHH
T ss_pred eCCcccccchhHHHHHHHHHHHHHHHhCCCceEEEEeeHHHHHHHHHcCCCeEEeecccc-CCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999987642 11 2233455564 35899999999998876
Q ss_pred -cCCcceEEEEeeeccccccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 040116 165 -NVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLE 243 (298)
Q Consensus 165 -~~~~d~v~iiyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~alle 243 (298)
.|++|+|+||||+|+|+++|+|.++++||++..+..... ...+.|.||| +++++|+.|+|.||++.||+|++|
T Consensus 160 ~~g~~d~v~lvyn~f~s~~~q~~~~~~lLPl~~~~~~~~~----~~~~~~~~Ep--~~~~vl~~Llp~yl~~~iy~alle 233 (286)
T 3oaa_G 160 DEGRLDKLYIVSNKFINTMSQVPTISQLLPLPASDDDDLK----HKSWDYLYEP--DPKALLDTLLRRYVESQVYQGVVE 233 (286)
T ss_dssp HTTSCSEEEEEEEEEEETTEEEEEEEECSSCCCCHHHHSC----CCSCCCEESS--CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCEEEEEEcccccccccceeEEEecCCCcccccccc----cCCCCceeCC--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999865433211 1234689999 999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhh
Q 040116 244 NACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296 (298)
Q Consensus 244 S~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl 296 (298)
|+||||+|||+||++|||||+||+++|+++|||+||++||+||+|||+|++||
T Consensus 234 s~aSE~aARm~AM~~At~NA~eli~~Ltl~yNr~RQa~IT~El~EIv~Ga~Al 286 (286)
T 3oaa_G 234 NLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 286 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999996
No 2
>3oee_G ATP synthase subunit gamma; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} SCOP: c.49.2.0 PDB: 2wpd_G* 3fks_G 2hld_G* 3oeh_G* 3ofn_G* 3zry_G* 4b2q_G* 3oe7_G*
Probab=100.00 E-value=4.9e-75 Score=539.17 Aligned_cols=245 Identities=33% Similarity=0.532 Sum_probs=215.7
Q ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCCC-----CC----CCceEEEEEcCC
Q 040116 43 ISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPT-----VD----AKKNVIVTISSD 113 (298)
Q Consensus 43 asl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~~-----~~----~~k~~~IvitSD 113 (298)
+++++||+||+||++|+|||+||||||++|+||+|+++.+.|||++++.+++.+... .+ .++.+|||||||
T Consensus 1 a~lkeIk~RI~Svk~t~kITkAMkmVAaaKlrkaq~~~~~~rpY~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~IvitSD 80 (278)
T 3oee_G 1 ATLKEVEMRLKSIKNIEKITKTMKIVASTRLSKAEKAKISAKKMDEAEQLFYKNAETKNLDVEATETGAPKELIVAITSD 80 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC----------CEEEEEECCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcccccccccccccCCcEEEEEEeCC
Confidence 589999999999999999999999999999999999999999999999999987421 11 366799999999
Q ss_pred CccccccchHHHHHHHHhhhccc---------------------CceeeeeeccCCCCChHhhHHHHHHHHh---cCCcc
Q 040116 114 KGLCGGINSTAVKISKSLHKLNS---------------------DIELIITELQKNPLNYTQVSVLADDILK---NVEFD 169 (298)
Q Consensus 114 rGLCG~fN~~vik~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~a~~i~~~l~~---~~~~d 169 (298)
||||||||+||+|.+.+.++... .+...+.+++.++|+|+++..|++.+++ .|++|
T Consensus 81 rGLcG~fN~ni~k~~~~~~~~~~~~~l~~vG~Kg~~~~~~~~~~~i~~~~~~~~~~~p~~~~a~~i~~~i~~~~~~g~~d 160 (278)
T 3oee_G 81 KGLCGSIHSQLAKAVRRHLNDQPNADIVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYP 160 (278)
T ss_dssp CCCSTTHHHHHHHHHHHHTTSCTTCEEEEESHHHHHHHHHHCTTTEEEEECSCSSSCCCHHHHHHHHHHHHHTTCGGGCS
T ss_pred ccccchhhHHHHHHHHHHHHhcCCeEEEEEehHHHHHHHHcCCCceEEeeccCCCCCCCHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999998874321 1233455665567899999999999986 47999
Q ss_pred eEEEEeeeccccccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 040116 170 ALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQ 249 (298)
Q Consensus 170 ~v~iiyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~alleS~aSE~ 249 (298)
+|+||||+|+|+++|+|+++++||++..+.. ...+.|+||| + +++|+.|+|.||++.||+|++||+||||
T Consensus 161 ~v~ivyn~f~s~~~q~~~~~~llP~~~~~~~-------~~~~~y~~eP--~-~~vl~~Llp~yl~~~iy~alles~aSE~ 230 (278)
T 3oee_G 161 KISIFYNDPVSSLSFEPSEKPIFNAKTIEQS-------PSFGKFEIDT--D-ANVPRDLFEYTLANQMLTAMAQGYAAEI 230 (278)
T ss_dssp EEEEEEEEECSSSCEEEEEEEECCHHHHHSC-------TTSTTSCCCS--S-SCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecccccceeeeeEEEecCCCCccccc-------cCCCceecCc--h-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999753211 1245689999 8 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhhc
Q 040116 250 GARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 297 (298)
Q Consensus 250 aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl~ 297 (298)
+|||+||++|||||+||+++|+++|||+||++||+||+|||+|++||+
T Consensus 231 aARm~AM~~AtdNA~eli~~Ltl~yNr~RQa~IT~El~EIv~Ga~Al~ 278 (278)
T 3oee_G 231 SARRNAMDNASKNAGDMINRYSILYNRTRQAVITNELVDIITGASSLG 278 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999984
No 3
>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-74 Score=539.42 Aligned_cols=248 Identities=33% Similarity=0.526 Sum_probs=215.3
Q ss_pred cCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCCCCC---------CCceEEEEE
Q 040116 40 VRSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVD---------AKKNVIVTI 110 (298)
Q Consensus 40 ~~Masl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~~~~---------~~k~~~Ivi 110 (298)
.+|+++++||+||+||++|+|||+||||||++|+||+|+++.+.|||++++++++.++.... .++.++|||
T Consensus 31 ~~MaslkeIk~RI~Svk~t~KITkAMkmVAasKlrkaq~~~~~~rpY~~~l~~vl~~l~~~~~~~~~~p~~~k~~~~Ivi 110 (311)
T 2xok_G 31 RTYATLKEVEMRLKSIKNIEKITKTMKIVASTRLSKAEKAKISAKKMDEAEQLFYKNAETKNLDVEATETGAPKELIVAI 110 (311)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTHHHHHHHHHHHTTCCC-----------CEEEEEE
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccCCcccCceEEEEE
Confidence 44899999999999999999999999999999999999999999999999999999875321 356799999
Q ss_pred cCCCccccccchHHHHHHHHhhhccc---------------------CceeeeeeccCCCCChHhhHHHHHHHHh---cC
Q 040116 111 SSDKGLCGGINSTAVKISKSLHKLNS---------------------DIELIITELQKNPLNYTQVSVLADDILK---NV 166 (298)
Q Consensus 111 tSDrGLCG~fN~~vik~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~a~~i~~~l~~---~~ 166 (298)
|||||||||||++|+|.+.+.++... .+...+.++++.+|+|+++..|++.+++ .|
T Consensus 111 tSDrGLCG~fNsni~k~~~~~i~~~~g~~l~~VG~Kg~~~~~~~~~~~i~~~~~~~~~~~p~~~~a~~i~~~i~~~~~~g 190 (311)
T 2xok_G 111 TSDKGLCGSIHSQLAKAVRRHLNDQPNADIVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAG 190 (311)
T ss_dssp CCSCCSSTTHHHHHHHHHHHSSSSCTTCEEEEESHHHHHHHHTTSTTTEEEEEESCTTSCCCHHHHHHHHHHHHHTTCCT
T ss_pred eCCCcccchhhHHHHHHHHHHHHhcCCCEEEEechHHHHHHHHhcCCCeEEEecccCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999998763210 2334556666547899999999999997 47
Q ss_pred CcceEEEEeeeccccccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040116 167 EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENAC 246 (298)
Q Consensus 167 ~~d~v~iiyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~alleS~a 246 (298)
++|+|+||||+|+|.++|+|+++++||++...... ..++|+||| +++||+.|+|+||++.||+|++||+|
T Consensus 191 ~~d~v~lvYn~f~s~~~q~p~~~~lLPl~~~~~~~-------~~~~y~~EP---~e~vL~~Llp~yl~~~iy~allEs~A 260 (311)
T 2xok_G 191 TYPKISIFYNDPVSSLSFEPSEKPIFNAKTIEQSP-------SFGKFEIDT---DANVPRDLFEYTLANQMLTAMAQGYA 260 (311)
T ss_dssp TCSEEEEEEEECSSSSCCEEEEEEECCHHHHHHSG-------GGGGSCCCC---CSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEeeccccceeeeEEEEEccCCccccccc-------CCCCceeCC---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999986421111 123588997 57999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhhc
Q 040116 247 SEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 297 (298)
Q Consensus 247 SE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl~ 297 (298)
|||+|||+||++|||||+||+++|+++|||+||++||+||+|||+|++||+
T Consensus 261 SE~aARm~AM~~AtdNA~eli~~Ltl~yNraRQa~IT~EL~EIVsGa~Al~ 311 (311)
T 2xok_G 261 AEISARRNAMDNASKNAGDMINRYSILYNRTRQAVITNELVDIITGASSLG 311 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999984
No 4
>2ck3_G ATP synthase subunit gamma\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: c.49.2.1 PDB: 1cow_G* 1bmf_G* 1e1q_G* 1e1r_G* 1efr_G* 1e79_G* 1h8h_G* 1nbm_G* 1ohh_G* 1qo1_G 1w0j_G* 1w0k_G* 1h8e_G* 2jiz_G* 2jj1_G* 2jj2_G* 2v7q_G* 2wss_G* 2xnd_G* 2w6j_G ...
Probab=100.00 E-value=3.4e-74 Score=531.90 Aligned_cols=243 Identities=39% Similarity=0.560 Sum_probs=162.6
Q ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCCCC---CCCceEEEEEcCCCccccc
Q 040116 43 ISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV---DAKKNVIVTISSDKGLCGG 119 (298)
Q Consensus 43 asl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~~~---~~~k~~~IvitSDrGLCG~ 119 (298)
+++++||+||+||++|+|||+||||||++|+||+|+++.+.|||++++.+++.++... +.++.++||||||||||||
T Consensus 1 a~lkeIk~RI~Svk~t~kITkAMkmVAaaKlrkaq~~~~~~rpY~~~~~~~~~~~~~~~~~~~k~~~~ivitSDrGLcG~ 80 (272)
T 2ck3_G 1 ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADIKTPEDKKKHLIIGVSSDRGLCGA 80 (272)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------------CCCCBCCSCCCSSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHhccccCccccCceEEEEEeCCcccccc
Confidence 4799999999999999999999999999999999999999999999999999877421 2345689999999999999
Q ss_pred cchHHHHHHHHhhhcc-----c--------------------CceeeeeeccCCCCChHhhHHHHHHHHhc-CCcceEEE
Q 040116 120 INSTAVKISKSLHKLN-----S--------------------DIELIITELQKNPLNYTQVSVLADDILKN-VEFDALRI 173 (298)
Q Consensus 120 fN~~vik~~~~~~~~~-----~--------------------~~~~~~~~~~~~~~~~~~a~~i~~~l~~~-~~~d~v~i 173 (298)
||+||+|.+.+.++.. + .+...+.++++.+|+|+++..|++.+++. +++|+|+|
T Consensus 81 ~Nsni~k~~~~~~~~~~~~g~~~~l~~vG~K~~~~~~~~~~~~i~~~~~~~~~~~p~~~~a~~i~~~~~~~~~~~d~v~i 160 (272)
T 2ck3_G 81 IHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSI 160 (272)
T ss_dssp SHHHHC------------------CCCBSHHHHHHC----------CBCSCSSSCCCHHHHHHHHHHC----------CC
T ss_pred ccHHHHHHHHHHHHHhhccCCceEEEEecHHHHHHHHhccCCceeeeecccCCCCCCHHHHHHHHHHHHHccCCCceEEE
Confidence 9999999998877321 0 11222445544468999999999999986 79999999
Q ss_pred EeeeccccccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 040116 174 IYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARM 253 (298)
Q Consensus 174 iyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~alleS~aSE~aaRm 253 (298)
+||+|+|+++|+|++.++||++..+.. ...|.||| ++++||+.|+|.|+.+.||+|++||.||||+|||
T Consensus 161 vyn~f~s~~~q~p~~~~lLPl~~~~~~---------~~~~~~Ep--~~~~vl~~llp~y~~~~iy~alles~aSE~aARm 229 (272)
T 2ck3_G 161 IFNRFRSVISYKTEEKPIFSLDTISSA---------ESMSIYDD--IDADVLRNYQEYSLANIIYYSLKESTTSEQSARM 229 (272)
T ss_dssp CCCEECSSSCEECC-------------------------------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeccccccceeeeeeeccCCCccccc---------ccccccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999642211 12478999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhh
Q 040116 254 SAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296 (298)
Q Consensus 254 ~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl 296 (298)
+||++|||||+||+++|+++|||+||++||+||+|||||++||
T Consensus 230 ~AM~~AtdNA~eli~~L~l~yNr~RQa~IT~El~EIv~Ga~Al 272 (272)
T 2ck3_G 230 TAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 272 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999996
No 5
>2qe7_G ATP synthase subunit gamma; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP}
Probab=100.00 E-value=3.6e-74 Score=535.54 Aligned_cols=247 Identities=33% Similarity=0.462 Sum_probs=174.5
Q ss_pred CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCCCC------------CCCceEEEE
Q 040116 42 SISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV------------DAKKNVIVT 109 (298)
Q Consensus 42 Masl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~~~------------~~~k~~~Iv 109 (298)
|+++++||+||+||++|+|||+||||||++|+||+|+++...+||++.+++++.++... +.++.+|||
T Consensus 1 Ma~lkeik~RI~Svk~t~kITkAMkmVAaaKlrkaq~~~~~~rpY~~~~~~~l~~l~~~~~~~~~~~~~~~~~k~~~~Iv 80 (286)
T 2qe7_G 1 MQGMREIKRRIRSVKNTRQITKAMKMVAAAKLRRAQETAENARPYADKIKEVISSIAAGTKDFSHPMLEARPVKKTGYMV 80 (286)
T ss_dssp --CCSSSSHHHHHHHHHHHHHHHHHHHHHHHTTSTTTSSSSSSSSTTCC--------------CCSSCSCCCCSSCCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCccccccccCcEEEEE
Confidence 78999999999999999999999999999999999999999999999999998876321 125679999
Q ss_pred EcCCCccccccchHHHHHHHHhhhcc-----c-------------------CceeeeeeccCCCCChHhhHHHHHHHHh-
Q 040116 110 ISSDKGLCGGINSTAVKISKSLHKLN-----S-------------------DIELIITELQKNPLNYTQVSVLADDILK- 164 (298)
Q Consensus 110 itSDrGLCG~fN~~vik~~~~~~~~~-----~-------------------~~~~~~~~~~~~~~~~~~a~~i~~~l~~- 164 (298)
||||||||||||++|+|.+.+.++.. + .+...+.++++ +|+|+++..|++.+++
T Consensus 81 itsDrGLcG~~N~ni~k~~~~~i~~~~~~~~~~~~~~iG~Kg~~~~~~~~~~i~~~~~~~~~-~p~~~~a~~i~~~i~~~ 159 (286)
T 2qe7_G 81 ITSDRGLAGPYNANILRLVSKTIEERHQSKDEYVIFAVGRKGRDFFKKRGYPVVEEVTGISD-TPSLTEIQDIAQSAIGM 159 (286)
T ss_dssp CCCTTCCCTHHHHHHHTGGGTTTTSSCTTSSCCCCCCCSHHHHHHHHSSSSCCSCCCSCCCS-SCCSTTTHHHHHHHHHH
T ss_pred EeCCCCcccchhHHHHHHHHHHHHHhhccCCceEEEEechHHHHHHHHcCCCceeeeccCCC-CCCHHHHHHHHHHHHHH
Confidence 99999999999999999998877421 0 12233445543 6789999999999987
Q ss_pred --cCCcceEEEEeeeccccccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 040116 165 --NVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVL 242 (298)
Q Consensus 165 --~~~~d~v~iiyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~all 242 (298)
.|++|+|+||||+|+|.++|+|.+.++||++..+.... ..++|.||| +++++|+.|+|.||++.||+|++
T Consensus 160 ~~~~~~d~v~lvyn~f~s~~~q~~~~~~lLP~~~~~~~~~------~~~~y~~Ep--~~~~vl~~Ll~~yl~~~iy~al~ 231 (286)
T 2qe7_G 160 FADETFDKLTIFYNEFVSPIVQRPVEKQLLPLTSEEVLDG------PVSAYEYEP--DSESVLEVLLPKYAETLIYSALL 231 (286)
T ss_dssp HSSSSCSCCCCCCCCCSBTTBCCCCCCCCSSCCC-------------------------------CCCTTSSHHHHTTTT
T ss_pred HhcCCcceEEEEEeecccceeeeeEEEEecCCCccccccc------cCCCceecC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999964322101 123589999 99999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhhc
Q 040116 243 ENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 297 (298)
Q Consensus 243 eS~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl~ 297 (298)
||.||||+|||+||++|||||+||+++|+++|||+||++||+||+|||||++||+
T Consensus 232 Es~asE~aaRm~AM~~At~Na~eli~~L~l~yNr~RQa~IT~El~EIv~Ga~Al~ 286 (286)
T 2qe7_G 232 DAKASEFGARMTAMGNATDNATEMLETLTLQFNRARQAAITQEIAEIVAGANALR 286 (286)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999984
No 6
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1
Probab=100.00 E-value=4.4e-50 Score=362.67 Aligned_cols=191 Identities=29% Similarity=0.362 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCCCC------------CCCceEEEEEcCCCccccccchHHHHH
Q 040116 60 KITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV------------DAKKNVIVTISSDKGLCGGINSTAVKI 127 (298)
Q Consensus 60 kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~~~------------~~~k~~~IvitSDrGLCG~fN~~vik~ 127 (298)
|||+||||||+|||||||+++.+.|||++++++++.++... +.++.++||||||||||||||+||+|.
T Consensus 1 KITkAMkmVAasKlrkaq~~~~~~rpY~~~~~~~l~~l~~~~~~~~~p~~~~r~~k~~~~IvitSDrGLcG~~Nsni~k~ 80 (230)
T 1fs0_G 1 KITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGNLEYKHPYLEDRDVKRVGYLVVSTDRGLCGGLNINLFKK 80 (230)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCGGGSCCCCSEEEEEEECCSSSCSTTHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcCcccCCccccccccCcEEEEEEeCCccccccccHHHHHH
Confidence 79999999999999999999999999999999998865211 125679999999999999999999999
Q ss_pred HHHhhhcc-----c-------------------CceeeeeeccCCCCChHhhHHHHHHHHh---cCCcceEEEEeeeccc
Q 040116 128 SKSLHKLN-----S-------------------DIELIITELQKNPLNYTQVSVLADDILK---NVEFDALRIIYSKFHS 180 (298)
Q Consensus 128 ~~~~~~~~-----~-------------------~~~~~~~~~~~~~~~~~~a~~i~~~l~~---~~~~d~v~iiyn~f~s 180 (298)
+.+.++.. + .+...+.++++ +|+|+++..|++.+++ .|++|+|+||||+|+|
T Consensus 81 ~~~~i~~~~~~g~~~~l~~vG~Kg~~~~~~~~~~i~~~~~~~~~-~p~~~~a~~i~~~i~~~~~~g~~d~v~lvYn~f~s 159 (230)
T 1fs0_G 81 LLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMGD-NPSLSELIGPVKVMLQAYDEGRLDKLYIVSNKFIN 159 (230)
T ss_dssp HHHHHHHHHHTTCEEEEEEESHHHHHHHHHHCCCEEEEECCCTT-CCCSHHHHHHHHHHHHHHHTTSCSCEEEEEEEEEE
T ss_pred HHHHHHHhhcCCCcEEEEEEeHHHHHHHHhCCCceEEeecCCCC-CCCHHHHHHHHHHHHHHHhcCCCcEEEEEEeeecc
Confidence 99887321 0 23344556654 6899999999999986 5899999999999999
Q ss_pred cccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 040116 181 VVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMD 257 (298)
Q Consensus 181 ~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~alleS~aSE~aaRm~AM~ 257 (298)
+++|+|++++|||++..+.... ....++|+||| +++++|+.|+|+||++.||+|++||.||||+|||+||+
T Consensus 160 ~~~q~p~~~~lLP~~~~~~~~~----~~~~~~y~~Ep--~~~~vl~~Llp~yl~~~iy~alles~aSE~aARm~AM~ 230 (230)
T 1fs0_G 160 TMSQVPTISQLLPLPASDDDDL----KHKSWDYLYEP--DPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMK 230 (230)
T ss_dssp TTEEEEEEEEEESCC-----------CCCSCCCEEES--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cEEeeEEEEEecCCChhhcccc----cccCCCeEecC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999964222110 00123689999 99999999999999999999999999999999999995
No 7
>1qw2_A Conserved hypothetical protein TA1206; structural genomics, beta/alpha, antiparallel beta sandwich, protein structure initiative; 1.50A {Thermoplasma acidophilum} SCOP: d.249.1.1
Probab=51.33 E-value=7.5 Score=30.07 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=19.2
Q ss_pred eEEEEEcCCCcc--ccccchHHHHHH
Q 040116 105 NVIVTISSDKGL--CGGINSTAVKIS 128 (298)
Q Consensus 105 ~~~IvitSDrGL--CG~fN~~vik~~ 128 (298)
.-+++|.+|+|+ ||.+|-.+.+.+
T Consensus 30 ~~Ll~i~~~kG~imCGalDv~~~ekl 55 (102)
T 1qw2_A 30 APLLFIKGSKGYAMCGYLNMETSNKV 55 (102)
T ss_dssp SCEEEEECSSCEEECTTCCHHHHHHT
T ss_pred CcEEEEEeCceEEEecccChhHHHhh
Confidence 347889999996 999999885543
No 8
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=43.97 E-value=62 Score=21.59 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhh
Q 040116 251 ARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGA 293 (298)
Q Consensus 251 aRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGa 293 (298)
-|..+|+.=+ ++++.-..|+-++-+-|-+.|-.||.|+-+|.
T Consensus 7 rr~e~ld~l~-~LEkqF~~LkEqlY~ERl~ql~~~Leel~~g~ 48 (49)
T 2xus_A 7 RRSECVSEML-DLEKQFSELKEKLFRERLSQLRLRLEEVGAER 48 (49)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4566666543 57778888999999999999999999998874
No 9
>3b5q_A Putative sulfatase YIDJ; NP_810509.1, structural genomics, joint center for structural genomics, JCSG; HET: EPE; 2.40A {Bacteroides thetaiotaomicron vpi-5482}
Probab=42.30 E-value=20 Score=34.20 Aligned_cols=30 Identities=27% Similarity=0.266 Sum_probs=20.6
Q ss_pred HHHHHhcCCCCCCCceEEEEEcCCCccccc
Q 040116 90 FTALLGDTPTVDAKKNVIVTISSDKGLCGG 119 (298)
Q Consensus 90 l~~~l~~l~~~~~~k~~~IvitSDrGLCG~ 119 (298)
+.+++..|.......+.+|||+||.|.+.|
T Consensus 261 vG~ll~~L~~~g~~dnTiVIftSDHG~~~g 290 (482)
T 3b5q_A 261 VDSVLKALYSTPAGRNTIVVIMADHGDGMA 290 (482)
T ss_dssp HHHHHHHHTTSTTGGGEEEEEEESCCCCTT
T ss_pred HHHHHHHHHHcCCcCCeEEEEECCCCcccc
Confidence 445555554444456789999999998754
No 10
>2qzu_A Putative sulfatase YIDJ; Q64XZ4_bacfr, arylsulfatase, BFR123, NESG, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides fragilis}
Probab=36.66 E-value=21 Score=33.92 Aligned_cols=30 Identities=27% Similarity=0.470 Sum_probs=18.9
Q ss_pred HHHHHhcCCCCCCCceEEEEEcCCCccccc
Q 040116 90 FTALLGDTPTVDAKKNVIVTISSDKGLCGG 119 (298)
Q Consensus 90 l~~~l~~l~~~~~~k~~~IvitSDrGLCG~ 119 (298)
+.+++..|.......+.+|||+||.|.+.|
T Consensus 290 iG~ll~~L~~~g~~dnTiIiftSDHG~~~g 319 (491)
T 2qzu_A 290 VGRIIEALKQNNLFDNTIVVFTSDHGICMG 319 (491)
T ss_dssp HHHHHHHHHHTTCSTTEEEEEECSCCCCTT
T ss_pred HHHHHHHHHHcCCcCCeEEEEECcCCcccc
Confidence 344444333333345688999999998754
No 11
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=35.83 E-value=61 Score=23.26 Aligned_cols=32 Identities=13% Similarity=0.254 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH----HHHHhHhHHH
Q 040116 251 ARMSAMDSSSRNAGEMLDRLTL----TYNRTRQASI 282 (298)
Q Consensus 251 aRm~AM~~At~Na~e~i~~L~l----~yNr~RQa~I 282 (298)
-.|.+|+.=.+|+.+.++.|.. -|+++|+-+|
T Consensus 9 kkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~ 44 (75)
T 3mtu_A 9 KKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIEL 44 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4688898889999999999987 6779998754
No 12
>2vqr_A Putative sulfatase; phosphonate monoester hydrolase, hydrolase, plasmid, formylglycine, phosphodiesterase; 1.42A {Rhizobium leguminosarum BV} PDB: 2w8s_A
Probab=33.60 E-value=23 Score=34.15 Aligned_cols=30 Identities=13% Similarity=0.198 Sum_probs=18.9
Q ss_pred HHHHHhcCCCCCCCceEEEEEcCCCccccc
Q 040116 90 FTALLGDTPTVDAKKNVIVTISSDKGLCGG 119 (298)
Q Consensus 90 l~~~l~~l~~~~~~k~~~IvitSDrGLCG~ 119 (298)
|.+++..|.......+.+|||+||+|.+.|
T Consensus 330 iG~ll~~L~~~gl~dnTiIiftSDHG~~~g 359 (543)
T 2vqr_A 330 LGRVFSYLDETGQWDDTLIIFTSDHGEQLG 359 (543)
T ss_dssp HHHHHHHHHHTTCGGGEEEEEEESCCCCTT
T ss_pred HHHHHHHHHhcCCcCCeEEEEECcCCcccc
Confidence 344444333333345689999999998744
No 13
>2gso_A Phosphodiesterase-nucleotide pyrophosphatase; alpha beta, NPP, hydrolase; 1.30A {Xanthomonas axonopodis PV} PDB: 2gsn_A 2gsu_A* 2rh6_A*
Probab=32.79 E-value=17 Score=33.39 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=14.0
Q ss_pred CceEEEEEcCCCccccc
Q 040116 103 KKNVIVTISSDKGLCGG 119 (298)
Q Consensus 103 ~k~~~IvitSDrGLCG~ 119 (298)
..+.+||||||+|.+.+
T Consensus 208 ~~nT~vi~tSDHG~~~~ 224 (393)
T 2gso_A 208 RARTNIIVVSDHGMAEV 224 (393)
T ss_dssp GGGEEEEEECSCCCEEE
T ss_pred CCCeEEEEEcCCCCCCC
Confidence 35688999999999765
No 14
>1oao_C CODH, carbon monoxide dehydrogenase/acetyl-COA synthase alpha; oxidoreductase-transferase complex, electron transfer, oxidoreductase; 1.90A {Moorella thermoacetica} SCOP: e.26.1.3 PDB: 2z8y_M 3i01_M 3i04_M 1mjg_M 1ru3_A 3git_A 3s2x_A
Probab=32.29 E-value=44 Score=34.02 Aligned_cols=26 Identities=23% Similarity=0.616 Sum_probs=19.7
Q ss_pred EEEEcCCC-ccccccchHHHHHHHHhh
Q 040116 107 IVTISSDK-GLCGGINSTAVKISKSLH 132 (298)
Q Consensus 107 ~IvitSDr-GLCG~fN~~vik~~~~~~ 132 (298)
+-|||.|| ||||++|=-=.|++.+.-
T Consensus 517 VCvvtPeR~~lCGaisWlDaKAa~eid 543 (729)
T 1oao_C 517 VCIVTPERVGLCGAVSWLDAKASYEIN 543 (729)
T ss_dssp CEEEBTTBCCTTSCCCHHHHHHHHHHC
T ss_pred eEEECCCCcccccccchhhhhhhhccC
Confidence 45678998 999999986666666543
No 15
>1hdh_A Arylsulfatase; hydrolase, formylglycine hydrate; 1.3A {Pseudomonas aeruginosa} SCOP: c.76.1.2
Probab=31.88 E-value=25 Score=33.76 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=18.4
Q ss_pred HHHHHhcCCCCCCCceEEEEEcCCCccc
Q 040116 90 FTALLGDTPTVDAKKNVIVTISSDKGLC 117 (298)
Q Consensus 90 l~~~l~~l~~~~~~k~~~IvitSDrGLC 117 (298)
|.+++..|.......+.+||||||.|.+
T Consensus 294 iG~ll~~L~~~g~~dnTiIiftSDhG~~ 321 (536)
T 1hdh_A 294 IGRVVDYLRRQGELDNTFVLFMSDNGAE 321 (536)
T ss_dssp HHHHHHHHHHTTCGGGEEEEEEESSSCC
T ss_pred HHHHHHHHHHcCCcCCeEEEEECcCCCc
Confidence 3444444333334456899999999998
No 16
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=30.89 E-value=2.1e+02 Score=23.74 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=24.2
Q ss_pred ceEEEEEcCCCccccccchHHHHHHHHhhhc
Q 040116 104 KNVIVTISSDKGLCGGINSTAVKISKSLHKL 134 (298)
Q Consensus 104 k~~~IvitSDrGLCG~fN~~vik~~~~~~~~ 134 (298)
|+..|++||-| -|++|..+.+.+.+..+.
T Consensus 3 k~I~vi~GS~R--~~S~~~~la~~~~~~~~~ 31 (190)
T 3u7r_A 3 KTVAVMVGSLR--KDSLNHKLMKVLQKLAEG 31 (190)
T ss_dssp EEEEEEESCCS--TTCHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCC--CCCHHHHHHHHHHHhccC
Confidence 46778899999 699999999998887643
No 17
>3a52_A Cold-active alkaline phosphatase; hydrolase; 2.20A {Shewanella}
Probab=30.03 E-value=23 Score=33.55 Aligned_cols=40 Identities=8% Similarity=0.180 Sum_probs=27.0
Q ss_pred HHHHHHHHhchhhHHHHHHHHhcCCCCCCCceEEEEEcCCCcc
Q 040116 74 RAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGL 116 (298)
Q Consensus 74 rka~~~l~~~r~Y~~~l~~~l~~l~~~~~~k~~~IvitSDrGL 116 (298)
+.+...+.....|-+.+..++.-+.. ...-+||+|+|+|-
T Consensus 233 nd~~~al~e~~~fD~AV~~al~~~~~---~~dTLIIVTADH~~ 272 (400)
T 3a52_A 233 NDIATAMAEMQGFANAIEVVEQYIRQ---HPDTLLVVTADHNT 272 (400)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHH---CCSEEEEEECSCEE
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeccCCC
Confidence 34556777777777777777654321 12478999999995
No 18
>3fwb_B Nuclear mRNA export protein SAC3; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae}
Probab=25.86 E-value=1.6e+02 Score=19.98 Aligned_cols=33 Identities=3% Similarity=0.038 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 040116 223 EILQNLAEFQFSCVMFNAVLENACSEQGARMSA 255 (298)
Q Consensus 223 ~il~~L~~~yl~~~Ly~alleS~aSE~aaRm~A 255 (298)
.+=.+|+..+|.-.||...+||+|-+..-|..-
T Consensus 13 sLs~eLy~AFihE~lY~~~leskAd~f~~~~lk 45 (55)
T 3fwb_B 13 TMTRELYDAFLHERLYLIYMDSRAELKRNSTLK 45 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778899999999999999999998877543
No 19
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=25.02 E-value=2.8e+02 Score=22.50 Aligned_cols=59 Identities=15% Similarity=0.314 Sum_probs=35.3
Q ss_pred HhcchhcccccCCCcccccccccccCCCCCcccCCccHHHHHHHHHhHHHHHHHHHH--HHHHHHH
Q 040116 8 REGRRFATPLISPRPIAAIRSPFLSEEDAPLGVRSISTQIVRNRMKSVKNIQKITKA--MKMVAAS 71 (298)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Masl~eIk~RI~Sv~~~~kIT~A--MkmVAaa 71 (298)
.+|-+| -=|++|.+-.+ ..|+..+ +|.+- -.|+.+|+.++..-..-+|--.| |+-+|.-
T Consensus 13 asGqaf-EvIL~pps~~~-~~~~~~s--~P~~k-~~SleEIqkKLeAAEERRks~Ea~~lk~laek 73 (143)
T 3ryc_E 13 TSGQSW-EVILKPPSFDG-VPEFNAS--LPRRR-DPSLEEIQKKLEAAEERRKYQEAELLKHLAEK 73 (143)
T ss_dssp TTEEEE-EEEEECCSSCS-SCC--------CCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCce-eeeecCCCCCC-CCCCCCC--CCCCC-CCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456666 45556655443 3443332 33322 36899999999999998877766 6666544
No 20
>1fsu_A N-acetylgalactosamine-4-sulfatase; glycosaminoglycan degradation, hydrolase, glycopr lysosome; HET: ALS NAG; 2.50A {Homo sapiens} SCOP: c.76.1.2
Probab=23.35 E-value=36 Score=32.34 Aligned_cols=29 Identities=14% Similarity=0.112 Sum_probs=18.1
Q ss_pred HHHHHhcCCCCCCCceEEEEEcCCCcccc
Q 040116 90 FTALLGDTPTVDAKKNVIVTISSDKGLCG 118 (298)
Q Consensus 90 l~~~l~~l~~~~~~k~~~IvitSDrGLCG 118 (298)
|.+++..|.......+.+|||+||.|.+.
T Consensus 236 vG~ll~~L~~~g~~dnTiviftSDhG~~~ 264 (492)
T 1fsu_A 236 VGNVTAALKSSGLWNNTVFIFSTDNGGQT 264 (492)
T ss_dssp HHHHHHHHHHTTCGGGEEEEEEESSCCCG
T ss_pred HHHHHHHHHHcCCccCEEEEEECCCCCCc
Confidence 33444333323334578999999999874
No 21
>3ed4_A Arylsulfatase; structural genomics, PSI-2, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, transferase; 1.70A {Escherichia coli}
Probab=23.21 E-value=35 Score=32.27 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=16.1
Q ss_pred HHHHhcCCCCCCCceEEEEEcCCCcc
Q 040116 91 TALLGDTPTVDAKKNVIVTISSDKGL 116 (298)
Q Consensus 91 ~~~l~~l~~~~~~k~~~IvitSDrGL 116 (298)
.+++..|.......+.+|||+||.|-
T Consensus 282 G~ll~~L~~~g~~dnTlVIftSDHG~ 307 (502)
T 3ed4_A 282 GKVLDKIKAMGEEDNTIVIFTSDNGP 307 (502)
T ss_dssp HHHHHHHHHTTCGGGEEEEEEESSCC
T ss_pred HHHHHHHHHcCCcCCeEEEEeCCCCC
Confidence 33343333333345689999999994
No 22
>2w8d_A Processed glycerol phosphate lipoteichoic acid SY; transferase, phosphatase, cell membrane, transmembrane, LTA, membrane, secreted, cell WALL; HET: TPO PG4; 2.35A {Bacillus subtilis}
Probab=23.18 E-value=46 Score=31.19 Aligned_cols=29 Identities=10% Similarity=0.077 Sum_probs=17.3
Q ss_pred HHHHHhcCCCCCCCceEEEEEcCCCcccc
Q 040116 90 FTALLGDTPTVDAKKNVIVTISSDKGLCG 118 (298)
Q Consensus 90 l~~~l~~l~~~~~~k~~~IvitSDrGLCG 118 (298)
|.+++..|.......+.+|||+||+|-+.
T Consensus 235 iG~ll~~Lk~~gl~dnTiIv~tsDHG~~~ 263 (436)
T 2w8d_A 235 IEQFFNDLKKDGLYDKSIIVMYGDHYGIS 263 (436)
T ss_dssp HHHHHHHHHHTTCSTTEEEEEEECSCSSC
T ss_pred HHHHHHHHHhcCCcCCeEEEEECCCCccc
Confidence 44444433323334567899999998543
No 23
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.87 E-value=1.3e+02 Score=21.48 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=26.0
Q ss_pred cCCCccccccc--hHHHHHHHHhhhcccCceeeeeeccCCCCChHhhHHHHHHH
Q 040116 111 SSDKGLCGGIN--STAVKISKSLHKLNSDIELIITELQKNPLNYTQVSVLADDI 162 (298)
Q Consensus 111 tSDrGLCG~fN--~~vik~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~l 162 (298)
|||.|||++-| .+....++.....+ ..|+-++...|++.+
T Consensus 1 ~~~~~~~~~~~~~k~ql~~Lk~yF~~n------------~~Ps~eei~~LA~~l 42 (71)
T 2da7_A 1 GSSGSSGSPINPYKDHMSVLKAYYAMN------------MEPNSDELLKISIAV 42 (71)
T ss_dssp CCCCCSCCCCCSSTHHHHHHHHHHHHC------------SSCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhC------------CCCCHHHHHHHHHHh
Confidence 68999999998 66666666554321 235666666666654
No 24
>3ono_A Ribose/galactose isomerase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.75A {Vibrio parahaemolyticus}
Probab=21.99 E-value=3.3e+02 Score=23.48 Aligned_cols=61 Identities=11% Similarity=0.140 Sum_probs=37.3
Q ss_pred EEEEcCCCccccccchHHHHHHHHhhhcccCceeeeeecc-----CCCCChHhhHHHHHHHHhcCCcceE
Q 040116 107 IVTISSDKGLCGGINSTAVKISKSLHKLNSDIELIITELQ-----KNPLNYTQVSVLADDILKNVEFDAL 171 (298)
Q Consensus 107 ~IvitSDrGLCG~fN~~vik~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~a~~i~~~l~~~~~~d~v 171 (298)
=|+|+||.+ ..-=|.-|.+.+.++++... ..+.++| ..+.+|.+...-+-..+..|+.|..
T Consensus 5 kIaigsDha-~~lK~~~i~~~l~~~L~~~G---~eV~D~G~~~~~~~~~dYpd~a~~vA~~V~~g~~d~G 70 (214)
T 3ono_A 5 KIALMMENS-QAAKNAMVAGELNSVAGGLG---HDVFNVGMTDENDHHLTYIHLGIMASILLNSKAVDFV 70 (214)
T ss_dssp EEEECCCGG-GGGGHHHHHHHHHHHHHHTT---CEEEECSCSSTTSSCCCHHHHHHHHHHHHHTTSCSEE
T ss_pred EEEEECCCc-HHHHChhHHHHHHHHHHHCC---CEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCCCEE
Confidence 489999999 77777777888888775432 2233443 1235676554433344445677764
No 25
>2w5q_A Processed glycerol phosphate lipoteichoic acid synthase; transmembrane, cell WALL biogenesis/degradation, LTAS, membrane, secreted; 1.20A {Staphylococcus aureus} PDB: 2w5s_A* 2w5t_A* 2w5r_A*
Probab=21.56 E-value=43 Score=31.22 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=18.9
Q ss_pred HHHHHhcCCCCCCCceEEEEEcCCCccc-cccch
Q 040116 90 FTALLGDTPTVDAKKNVIVTISSDKGLC-GGINS 122 (298)
Q Consensus 90 l~~~l~~l~~~~~~k~~~IvitSDrGLC-G~fN~ 122 (298)
|.+++..|...+...+.+|||+||+|-+ |+.+.
T Consensus 235 iG~ll~~Lk~~g~~dnTiIVf~sDHG~~~~~~~~ 268 (424)
T 2w5q_A 235 LEEYINDLKKKGLYDNSVIMIYGDHYGISENHNN 268 (424)
T ss_dssp HHHHHHHHHHTTCSTTSEEEEEECSCSSCGGGHH
T ss_pred HHHHHHHHHhcCCcCCeEEEEECCCCcccccchh
Confidence 4444443322333445789999999854 44443
No 26
>3lxq_A Uncharacterized protein VP1736; alkaline, phosphatase, MDOB, sulfatase, PSI, MCSG, structural genomics; 1.95A {Vibrio parahaemolyticus}
Probab=21.45 E-value=42 Score=31.36 Aligned_cols=29 Identities=7% Similarity=0.127 Sum_probs=19.6
Q ss_pred HHHHHHhcCCCCCCCceEEEEEcCCCccc
Q 040116 89 PFTALLGDTPTVDAKKNVIVTISSDKGLC 117 (298)
Q Consensus 89 ~l~~~l~~l~~~~~~k~~~IvitSDrGLC 117 (298)
.+.+++..+......++.+|||+||+|-+
T Consensus 281 ~ig~~l~~L~~~g~~~nTlvI~tsDHG~~ 309 (450)
T 3lxq_A 281 ALGTFFDKAKKSSYWDDTIFIVIADHDAR 309 (450)
T ss_dssp HHHHHHHHHTTSSSGGGEEEEEEESCCSC
T ss_pred HHHHHHHHHHhCCCcCCeEEEEECCCCcc
Confidence 35555555544444567899999999964
No 27
>3m7v_A Phosphopentomutase; structural genomics, nysgrc, cytoplasm, isomerase, manganese binding, PSI-2, protein structure initiative; 2.00A {Streptococcus mutans}
Probab=20.85 E-value=79 Score=28.07 Aligned_cols=24 Identities=13% Similarity=0.265 Sum_probs=15.7
Q ss_pred HHHHHHhcCCCCCCCceEEEEEcCCCccc
Q 040116 89 PFTALLGDTPTVDAKKNVIVTISSDKGLC 117 (298)
Q Consensus 89 ~l~~~l~~l~~~~~~k~~~IvitSDrGLC 117 (298)
.+.+++..|. .+.+||||||.|-+
T Consensus 322 ~vg~~l~~L~-----entliiftsDnG~~ 345 (413)
T 3m7v_A 322 RLPEIIAAMK-----VDDLLLITADHGND 345 (413)
T ss_dssp HHHHHHHTCC-----TTEEEEEECSSBCC
T ss_pred HHHHHHHhcC-----CCCEEEEEccCCCC
Confidence 3445555442 35789999999954
No 28
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=20.33 E-value=1.8e+02 Score=18.64 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=29.4
Q ss_pred HHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhH
Q 040116 245 ACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQA 280 (298)
Q Consensus 245 ~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa 280 (298)
+.+|.-+|..-|+.-..-.++.+..|+.+-.-.||-
T Consensus 4 Yl~eLE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 4 YLSELENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 556777777778777777889999999999999984
Done!