BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040119
(366 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 67 PSGIGNLCSLEELHLSG-NNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASI 120
P G L+ L L +N TLP I+RL++L K+ L+ C L LP L A +
Sbjct: 246 PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 62 GEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLP 114
G +P LE L L+ N LPASI L++L ++ ++ C L LP
Sbjct: 115 GLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELP 167
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 52 TKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYR 95
T LD+S C L E P+ +L SL+ L++S NNFF+L Y+
Sbjct: 178 TFLDLSQCQL-EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 52 TKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYR 95
T LD+S C L E P+ +L SL+ L++S NNFF+L Y+
Sbjct: 497 TFLDLSQCQL-EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 539
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 52 TKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYR 95
T LD+S C L E P+ +L SL+ L++S NNFF+L Y+
Sbjct: 473 TFLDLSQCQL-EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 515
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 10/74 (13%)
Query: 64 GAIPSGI-GNLCSLEELHLSGNNFFTLPASIY-RLSKLSKIFLKDCKMLQNLPRLPASIH 121
++P G+ +L L++L+L GN +LP+ ++ RL+KL ++ L + LQ++P
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL-NTNQLQSIP------A 148
Query: 122 GIFLDGCVSLETLS 135
G F D +L+TLS
Sbjct: 149 GAF-DKLTNLQTLS 161
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 10/74 (13%)
Query: 64 GAIPSGI-GNLCSLEELHLSGNNFFTLPASIY-RLSKLSKIFLKDCKMLQNLPRLPASIH 121
++P G+ +L L++L+L GN +LP+ ++ RL+KL ++ L + LQ++P
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL-NTNQLQSIP------A 148
Query: 122 GIFLDGCVSLETLS 135
G F D +L+TLS
Sbjct: 149 GAF-DKLTNLQTLS 161
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 52 TKLDISYCDLGEGAIPSG-IGNLCSLEELHLSGNNFFTLPASIYRLS-KLSKIFLKDCKM 109
T LD+S+ L ++P G + L L+EL+L GN TLP + + KL K+ L +
Sbjct: 103 TVLDVSFNRLT--SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN--- 157
Query: 110 LQNLPRLPASIHGIFLDGCVSLETL 134
NL LPA + L+G +L+TL
Sbjct: 158 -NNLTELPAGL----LNGLENLDTL 177
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 52 TKLDISYCDLGEGAIPSG-IGNLCSLEELHLSGNNFFTLPASIYRLS-KLSKIFLKDCKM 109
T LD+S+ L ++P G + L L+EL+L GN TLP + + KL K+ L +
Sbjct: 103 TVLDVSFNRLT--SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN--- 157
Query: 110 LQNLPRLPASIHGIFLDGCVSLETL 134
NL LPA + L+G +L+TL
Sbjct: 158 -NNLTELPAGL----LNGLENLDTL 177
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 52 TKLDISYCDLGEGAIPSG-IGNLCSLEELHLSGNNFFTLPASIYRLS-KLSKIFLKDCKM 109
T LD+S+ L ++P G + L L+EL+L GN TLP + + KL K+ L +
Sbjct: 103 TVLDVSFNRLT--SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN--- 157
Query: 110 LQNLPRLPASIHGIFLDGCVSLETL 134
NL LPA + L+G +L+TL
Sbjct: 158 -NNLTELPAGL----LNGLENLDTL 177
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 52 TKLDISYCDLGEGAIPSG-IGNLCSLEELHLSGNNFFTLPASIYRLS-KLSKIFLKDCKM 109
T LD+S+ L ++P G + L L+EL+L GN TLP + + KL K+ L +
Sbjct: 103 TVLDVSFNRLT--SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN--- 157
Query: 110 LQNLPRLPASIHGIFLDGCVSLETL 134
NL LPA + L+G +L+TL
Sbjct: 158 -NNLTELPAGL----LNGLENLDTL 177
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 52 TKLDISYCDLGEGAIPSG-IGNLCSLEELHLSGNNFFTLPASIYRLS-KLSKIFLKDCKM 109
T LD+S+ L ++P G + L L+EL+L GN TLP + + KL K+ L +
Sbjct: 104 TVLDVSFNRLT--SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN--- 158
Query: 110 LQNLPRLPASIHGIFLDGCVSLETL 134
NL LPA + L+G +L+TL
Sbjct: 159 -NNLTELPAGL----LNGLENLDTL 178
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 64 GAIPSGI-GNLCSLEELHLSGNNFFTLPASIY-RLSKLSKIFLKDCKMLQNLPR 115
GA+P G+ +L L L L N LP++++ RL L ++F+ C L LPR
Sbjct: 77 GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC-CNKLTELPR 129
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 52 TKLDISYCDLGEGAIPSG-IGNLCSLEELHLSGNNFFTLPASIYRLS-KLSKIFLKDCKM 109
T LD+S+ L ++P G + L L+EL+L GN TLP + + KL K+ L +
Sbjct: 103 TVLDVSFNRLT--SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN--- 157
Query: 110 LQNLPRLPASIHGIFLDGCVSLETL 134
+L LPA + L+G +L+TL
Sbjct: 158 -NDLTELPAGL----LNGLENLDTL 177
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 52 TKLDISYCDLGEGAIPSG-IGNLCSLEELHLSGNNFFTLPASIYRLS-KLSKIFLKDCKM 109
T LD+S+ L ++P G + L L+EL+L GN TLP + + KL K+ L +
Sbjct: 103 TVLDVSFNRLT--SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN--- 157
Query: 110 LQNLPRLPASIHGIFLDGCVSLETL 134
L LPA + L+G +L+TL
Sbjct: 158 -NQLTELPAGL----LNGLENLDTL 177
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 52 TKLDISYCDLGEGAIPSG-IGNLCSLEELHLSGNNFFTLPASIYRLS-KLSKIFLKDCKM 109
T LD+S+ L ++P G + L L+EL+L GN TLP + + KL K+ L +
Sbjct: 103 TVLDVSFNRLT--SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN--- 157
Query: 110 LQNLPRLPASIHGIFLDGCVSLETL 134
L LPA + L+G +L+TL
Sbjct: 158 -NQLTELPAGL----LNGLENLDTL 177
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 52 TKLDISYCDLGEGAIPSG-IGNLCSLEELHLSGNNFFTLPASIYRLS-KLSKIFLKDCKM 109
T LD+S+ L ++P G + L L+EL+L GN TLP + + KL K+ L +
Sbjct: 103 TVLDVSFNRLT--SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN--- 157
Query: 110 LQNLPRLPASIHGIFLDGCVSLETL 134
L LPA + L+G +L+TL
Sbjct: 158 -NQLTELPAGL----LNGLENLDTL 177
>pdb|3GNM|L Chain L, The Crystal Structure Of The Jaa-f11 Monoclonal Antibody
Fab Fragment
Length = 219
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 221 SGFEFRKQIGQAMSDHLFLYYQNRGAISEVEFSSPSGLELKRCGVHP 267
SG +F +I + +D L +YY +G+ F S + LE+KR P
Sbjct: 72 SGTDFTLKISRVEADDLGVYYCFQGSHVPFTFGSGTKLEIKRADAAP 118
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 52 TKLDISYCDLGEGAIPSG-IGNLCSLEELHLSGNNFFTLPASIYRLS-KLSKIFLKDCKM 109
T LD+S+ L ++P G + L L+EL+L GN TLP + + KL K+ L +
Sbjct: 103 TVLDVSFNRLT--SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN--- 157
Query: 110 LQNLPRLPASIHGIFLDGCVSLETL 134
L LPA + L+G +L+TL
Sbjct: 158 -NQLTELPAGL----LNGLENLDTL 177
>pdb|1LO4|L Chain L, Retro-Diels-Alderase Catalytic Antibody 9d9
Length = 217
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 221 SGFEFRKQIGQAMSDHLFLYYQNRGAISEVEFSSPSGLELKRCGVHP 267
SG +F +I + ++ L LYY +G+ S F + LELKR P
Sbjct: 72 SGTDFTLKISRVEAEDLGLYYCFQGSHSPWTFGGGTKLELKRADAAP 118
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 54/255 (21%), Positives = 98/255 (38%), Gaps = 51/255 (20%)
Query: 68 SGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKM-----------LQNL--- 113
+G+ +L LE L+L GNN T + RL+KL + L+D ++ LQNL
Sbjct: 125 NGLVHLPQLESLYL-GNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS 183
Query: 114 ------PRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGSSIT- 166
R A + + + S E L+ ++VVP + +N +GS +T
Sbjct: 184 KNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT-------VKNTDGSLVTP 236
Query: 167 -ISTPPKTYKNHKLVGYAMCCVFRVPKYSLPYYNRWSPDPVHMLSIYSKPTTSGFSGFEF 225
I + Y+ + K+ LP + + I+ +P T G + F
Sbjct: 237 EIISDDGDYEKPNV------------KWHLPEFTN------EVSFIFYQPVTIGKAKARF 278
Query: 226 RKQIGQAMSDHLFLYYQNRGAISEVEFSSPSGLELKRCGVHPIYVHQGDKFNQTSDPVWN 285
++ Q + + + Y G + + + + + + + YV +G + WN
Sbjct: 279 HGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTEKNGGHEWN 338
Query: 286 LNEFGHDCLGSTSFT 300
F D + FT
Sbjct: 339 ---FNTDYMSGNDFT 350
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 65 AIPSGIGNLCSLEELHLSGNNFFTLPASIY-RLSKLSKIFL 104
+IP + L +L+EL+++ N ++P I+ RL+ L KI+L
Sbjct: 435 SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL 475
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 95/243 (39%), Gaps = 27/243 (11%)
Query: 68 SGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDG 127
+G+ +L LE L+L GNN T + RL+KL + L+D ++ +P L G
Sbjct: 128 NGLVHLPQLESLYL-GNNKITDITVLSRLTKLDTLSLEDNQISDIVP----------LAG 176
Query: 128 CVSLET--LSDGYWRDCSIV--VPGSEIPEWFEYQ-----NNEGSSITISTPPKTYKNHK 178
L+ LS + D + + ++ E F + N S++ + P T KN
Sbjct: 177 LTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVV---PNTVKNTD 233
Query: 179 LVGYAMCCVFRVPKYSLPYYNRWSPDPVHMLS-IYSKPTTSGFSGFEFRKQIGQAMSDHL 237
+ Y P P+ + +S I+ +P T G + F ++ Q + +
Sbjct: 234 GSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVY 293
Query: 238 FLYYQNRGAISEVEFSSPSGLELKRCGVHPIYVHQGDKFNQTSDPVWNLNEFGHDCLGST 297
+ Y G + + + + + + + YV +G + WN F D +
Sbjct: 294 TVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTEKNGGHEWN---FNTDYMSGN 350
Query: 298 SFT 300
FT
Sbjct: 351 DFT 353
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 65 AIPSGIGNLCSLEELHLSGNNFFTLPASIY-RLSKLSKIFLKD 106
+IP + +L +L+EL+++ N ++P ++ RL+ L I+L D
Sbjct: 464 SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD 506
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 70 IGNLC----SLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFL 125
I +LC SLEEL++S N LPA RL +L F L +P LP ++ + +
Sbjct: 309 IRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASF----NHLAEVPELPQNLKQLHV 364
Query: 126 D 126
+
Sbjct: 365 E 365
>pdb|3NZT|A Chain A, 2.0 Angstrom Crystal Structure Of Glutamate--Cysteine
Ligase (Gsha) Ftom Francisella Tularensis In Complex
With Amp
Length = 525
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 317 CRDDAGSTTSSERSFL---KRSLEEYVGAAEASGSGCC 351
+D AG + ++E+ + K SL+EY+ S GCC
Sbjct: 488 LKDQAGQSVAAEKELVANDKISLDEYINRYYKSSKGCC 525
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 55 DISYCDLGEGAIPS--GIGNLCSLEELHLSGNNFFTL-PASIYRLSKLSKIFLKDCKM 109
++ Y +LG I + L LEEL +SGN+F + P S + LS L K+++ + ++
Sbjct: 197 NLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254
>pdb|2IPU|L Chain L, Pfa1 Fab Fragment Complexed With Abeta 1-8 Peptide
pdb|2IPU|K Chain K, Pfa1 Fab Fragment Complexed With Abeta 1-8 Peptide
pdb|2IQ9|L Chain L, Pfa2 Fab Fragment, Triclinic Apo Form
Length = 219
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 221 SGFEFRKQIGQAMSDHLFLYYQNRGAISEVEFSSPSGLELKRCGVHP 267
SG +F +I + ++ L +YY +G+ + F + + LELKR P
Sbjct: 72 SGTDFTLKISRVEAEDLGVYYCFQGSHVPLTFGAGTKLELKRADAAP 118
>pdb|4AEI|L Chain L, Crystal Structure Of The Aahii-Fab4c1 Complex
pdb|4AEI|M Chain M, Crystal Structure Of The Aahii-Fab4c1 Complex
pdb|4AEI|N Chain N, Crystal Structure Of The Aahii-Fab4c1 Complex
Length = 219
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 221 SGFEFRKQIGQAMSDHLFLYYQNRGAISEVEFSSPSGLELKRCGVHP 267
SG +F +I + ++ L +YY +G+ + F + + LELKR P
Sbjct: 72 SGTDFTLKISRVEAEDLGVYYCFQGSHVPLTFGAGTKLELKRADAAP 118
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 65 AIPSGIGN-LCSLEELHLSGNNFFTLPASIY-RLSKLSKIFLKDCKMLQNLP 114
++P+G+ N L SL L+LS N +LP ++ +L++L ++ L + LQ+LP
Sbjct: 66 SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL-NTNQLQSLP 116
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 65 AIPSGI-GNLCSLEELHLSGNNFFTLPASIY-RLSKLSKIFLKDCKMLQNLPRLPASIHG 122
++P+G+ L SL +L+L GN +LP ++ +L+ L+ + L LQ+LP +G
Sbjct: 42 SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST-NQLQSLP------NG 94
Query: 123 IFLDGCVSLETLS 135
+F D L+ L+
Sbjct: 95 VF-DKLTQLKELA 106
>pdb|3IFP|L Chain L, X-Ray Structure Of Amyloid Beta Peptide:antibody (Abeta1-
7:12b4) Complex
pdb|3IFP|B Chain B, X-Ray Structure Of Amyloid Beta Peptide:antibody (Abeta1-
7:12b4) Complex
pdb|3IFP|D Chain D, X-Ray Structure Of Amyloid Beta Peptide:antibody (Abeta1-
7:12b4) Complex
pdb|3IFP|F Chain F, X-Ray Structure Of Amyloid Beta Peptide:antibody (Abeta1-
7:12b4) Complex
Length = 219
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 221 SGFEFRKQIGQAMSDHLFLYYQNRGAISEVEFSSPSGLELKRCGVHP 267
SG +F +I + ++ L +YY +G+ + F + + LELKR P
Sbjct: 72 SGTDFTLKISRVEAEDLGVYYCFQGSHVPLTFGAGTKLELKRADAAP 118
>pdb|2G60|L Chain L, Structure Of Anti-Flag M2 Fab Domain
Length = 216
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 221 SGFEFRKQIGQAMSDHLFLYYQNRGAISEVEFSSPSGLELKRCGVHP 267
SG +F +I + ++ L +YY +GA + F + LE+KR P
Sbjct: 72 SGTDFTLKISRVEAEDLGVYYCFQGAHAPYTFGGGTKLEIKRADAAP 118
>pdb|2R0Z|L Chain L, Pfa1 Fab Complexed With Gripi Peptide Fragment
pdb|3EYS|L Chain L, Pfa1 Fab Fragment Complexed With Pyro-Glu3-A-Beta (3-8)
pdb|3EYU|L Chain L, Pfa1 Fab Fragment Complexed With Ror2(518-525)
Length = 219
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 221 SGFEFRKQIGQAMSDHLFLYYQNRGAISEVEFSSPSGLELKRCGVHP 267
SG +F +I + ++ L +YY +G+ + F + + LELKR P
Sbjct: 72 SGTDFTLKISRVEAEDLGVYYCFQGSHVPLTFGAGTKLELKRADAAP 118
>pdb|2DDQ|L Chain L, Crystal Structure Of The Fab Fragment Of A R310 Antibody
Complexed With (R)-Hne-Histidine Adduct
Length = 218
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 221 SGFEFRKQIGQAMSDHLFLYYQNRGAISEVEFSSPSGLELKRCGVHP 267
SG +F +I + ++ L +YY +G+ + F + + LELKR P
Sbjct: 72 SGTDFTLKISRVEAEDLGVYYCFQGSHVPLTFGAGTKLELKRADAAP 118
>pdb|1LO0|X Chain X, Catalytic Retro-Diels-Alderase Transition State Analogue
Complex
pdb|1LO0|L Chain L, Catalytic Retro-Diels-Alderase Transition State Analogue
Complex
pdb|1LO2|X Chain X, Retro-Diels-Alderase Catalytic Antibody
pdb|1LO2|L Chain L, Retro-Diels-Alderase Catalytic Antibody
pdb|1LO3|X Chain X, Retro-Diels-Alderase Catalytic Antibody: Product Analogue
pdb|1LO3|L Chain L, Retro-Diels-Alderase Catalytic Antibody: Product Analogue
Length = 219
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 221 SGFEFRKQIGQAMSDHLFLYYQNRGAISEVEFSSPSGLELKRCGVHP 267
SG +F +I + ++ L +YY +G+ + F + + LELKR P
Sbjct: 72 SGTDFTLKISRVETEDLGIYYCFQGSHFPLAFGAGTKLELKRADAAP 118
>pdb|3BKC|L Chain L, Crystal Structure Of Anti-Amyloid Beta Fab Wo2 (P21,
Formb)
pdb|3BKJ|L Chain L, Crystal Structure Of Fab Wo2 Bound To The N Terminal
Domain Of Amyloid Beta Peptide (1-16)
pdb|3BKM|L Chain L, Structure Of Anti-Amyloid-Beta Fab Wo2 (Form A, P212121)
Length = 252
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 221 SGFEFRKQIGQAMSDHLFLYYQNRGAISEVEFSSPSGLELKRCGVHP 267
SG +F +I + ++ L +YY + ++ + F + + LELKR P
Sbjct: 105 SGTDFTLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAP 151
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 68 SGIGNLCSLEELHLSGNNFFTLPASIYR-LSKLSKIFLK 105
+ +L SLEEL+LS NN +LP ++ L +L ++ L
Sbjct: 220 NAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLN 258
>pdb|3NN8|B Chain B, Crystal Structure Of Engineered Antibody Fragment Based On
3d5
pdb|3NN8|E Chain E, Crystal Structure Of Engineered Antibody Fragment Based On
3d5
pdb|3NN8|F Chain F, Crystal Structure Of Engineered Antibody Fragment Based On
3d5
pdb|3NN8|H Chain H, Crystal Structure Of Engineered Antibody Fragment Based On
3d5
Length = 116
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 221 SGFEFRKQIGQAMSDHLFLYYQNRGAISEVEFSSPSGLELKRCG 264
SG +F +I + ++ L +YY +G++ F + + LELKR G
Sbjct: 73 SGTDFTLKISRVEAEDLGIYYCFQGSLVPPTFGAGTKLELKRGG 116
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 68 SGIGNLCSLEELHLSGNNFFTLPASIYR-LSKLSKIFL 104
+ +L SLEEL+LS NN +LP ++ L +L ++ L
Sbjct: 220 NAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHL 257
>pdb|3BAE|L Chain L, Crystal Structure Of Fab Wo2 Bound To The N Terminal
Domain Of Amyloid Beta Peptide (1-28)
Length = 218
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 221 SGFEFRKQIGQAMSDHLFLYYQNRGAISEVEFSSPSGLELKRCGVHP 267
SG +F +I + ++ L +YY + ++ + F + + LELKR P
Sbjct: 72 SGTDFTLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAP 118
>pdb|1ZTX|L Chain L, West Nile Virus Envelope Protein Diii In Complex With
Neutralizing E16 Antibody Fab
Length = 212
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 221 SGFEFRKQIGQAMSDHLFLYYQNRGAISEVEFSSPSGLELKRCGVHP 267
SG ++ I ++ L LYY + + + F + + LELKR P
Sbjct: 67 SGTDYTLTISSVQAEDLALYYCQQHYTTPLTFGAGTKLELKRADAAP 113
>pdb|3NZ8|B Chain B, Crystal Structure Of The Hiv-2 Neutralizing Fab Fragment
7c8
pdb|3NZ8|L Chain L, Crystal Structure Of The Hiv-2 Neutralizing Fab Fragment
7c8
Length = 218
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 221 SGFEFRKQIGQAMSDHLFLYYQNRGAISEVEFSSPSGLELKRCGVHP 267
SG +F +I + ++ L +YY +G+ F S + LE+KR P
Sbjct: 72 SGTDFTLKISRVEAEDLGVYYCFQGSHVPFTFGSGTKLEIKRADAAP 118
>pdb|1CLZ|L Chain L, Igg Fab (Igg3, Kappa) Fragment (Mbr96) Complexed With
Lewis Y Nonoate Methyl Ester
Length = 219
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 221 SGFEFRKQIGQAMSDHLFLYYQNRGAISEVEFSSPSGLELKRCGVHP 267
SG +F +I + ++ L +YY +G+ F S + LE+KR P
Sbjct: 72 SGTDFTLKISRVEAEDLGVYYCFQGSHVPFTFGSGTKLEIKRADAAP 118
>pdb|1K75|A Chain A, The L-Histidinol Dehydrogenase (Hisd) Structure Implicates
Domain Swapping And Gene Duplication.
pdb|1K75|B Chain B, The L-Histidinol Dehydrogenase (Hisd) Structure Implicates
Domain Swapping And Gene Duplication
Length = 434
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 295 GSTSFTRSLNDDLDRAEASG-SCCRDDAGSTTSSERSFLKRSLEEYVGAAE 344
S S TR++ND LD +A G R+ + + + LK S EE A+E
Sbjct: 28 ASESITRTVNDILDNVKARGDEALREYSAKFDKTTVTALKVSAEEIAAASE 78
>pdb|2W60|B Chain B, Anti Citrullinated Collagen Type 2 Antibody Acc4
pdb|2W65|B Chain B, Anti Citrullinated Collagen Type 2 Antibody Acc4 In
Complex With A Citrullinated Peptide
pdb|2W65|D Chain D, Anti Citrullinated Collagen Type 2 Antibody Acc4 In
Complex With A Citrullinated Peptide
Length = 217
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 217 TSGFSGFEFRKQIGQAMSDHLFLYYQNRGAISEVEFSSPSGLELKRCGVHP 267
T SG +F +I + ++ L +YY +G + F + + LELKR P
Sbjct: 68 TGSGSGTDFTLKISRVEAEDLGVYYCWQGTHFPLTFGAGTKLELKRADAAP 118
>pdb|1KAE|A Chain A, L-Histidinol Dehydrogenase (Hisd) Structure Complexed With
L- Histidinol (Substrate), Zinc And Nad (Cofactor)
pdb|1KAE|B Chain B, L-Histidinol Dehydrogenase (Hisd) Structure Complexed With
L- Histidinol (Substrate), Zinc And Nad (Cofactor)
pdb|1KAH|A Chain A, L-histidinol Dehydrogenase (hisd) Structure Complexed With
L-histidine (product), Zn And Nad (cofactor)
pdb|1KAH|B Chain B, L-histidinol Dehydrogenase (hisd) Structure Complexed With
L-histidine (product), Zn And Nad (cofactor)
pdb|1KAR|A Chain A, L-histidinol Dehydrogenase (hisd) Structure Complexed With
Histamine (inhibitor), Zinc And Nad (cofactor)
pdb|1KAR|B Chain B, L-histidinol Dehydrogenase (hisd) Structure Complexed With
Histamine (inhibitor), Zinc And Nad (cofactor)
Length = 434
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 295 GSTSFTRSLNDDLDRAEASG-SCCRDDAGSTTSSERSFLKRSLEEYVGAAE 344
S S TR++ND LD +A G R+ + + + LK S EE A+E
Sbjct: 28 ASESITRTVNDILDNVKARGDEALREYSAKFDKTTVTALKVSAEEIAAASE 78
>pdb|1TET|L Chain L, Crystal Structure Of An Anticholera Toxin Peptide Complex
At 2.3 Angstroms
Length = 216
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 221 SGFEFRKQIGQAMSDHLFLYYQNRGAISEVEFSSPSGLELKRCGVHP 267
SG +F +I + ++ L +YY +G+ F S + LE+KR P
Sbjct: 72 SGTDFTLKISRVEAEDLGVYYCFQGSHIPFTFGSGTKLEIKRADAAP 118
>pdb|1ZEA|L Chain L, Structure Of The Anti-Cholera Toxin Antibody Fab Fragment
Te33 In Complex With A D-Peptide
Length = 216
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 221 SGFEFRKQIGQAMSDHLFLYYQNRGAISEVEFSSPSGLELKRCGVHP 267
SG +F +I + ++ L +YY +G+ F S + LE+KR P
Sbjct: 72 SGTDFTLKISRVEAEDLGVYYCFQGSHIPFTFGSGTKLEIKRADAAP 118
>pdb|2C1P|A Chain A, Fab-Fragment Of Enantioselective Antibody Complexed With
Finrozole
pdb|2C1P|L Chain L, Fab-Fragment Of Enantioselective Antibody Complexed With
Finrozole
Length = 218
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 217 TSGFSGFEFRKQIGQAMSDHLFLYYQNRGAISEVEFSSPSGLELKRCGVHP 267
T SG +F +I + ++ L +YY +G+ F + + LELKR P
Sbjct: 68 TGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAP 118
>pdb|2C1O|A Chain A, Enaiihis Fab Fragment In The Free Form
pdb|2C1O|L Chain L, Enaiihis Fab Fragment In The Free Form
Length = 254
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 217 TSGFSGFEFRKQIGQAMSDHLFLYYQNRGAISEVEFSSPSGLELKRCGVHP 267
T SG +F +I + ++ L +YY +G+ F + + LELKR P
Sbjct: 105 TGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAP 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,332,700
Number of Sequences: 62578
Number of extensions: 467236
Number of successful extensions: 1180
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1144
Number of HSP's gapped (non-prelim): 62
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)