Query 040119
Match_columns 366
No_of_seqs 374 out of 2879
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 05:19:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040119.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040119hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.9 2.4E-23 5.2E-28 231.3 24.7 261 3-274 779-1099(1153)
2 PLN00113 leucine-rich repeat r 99.5 1.4E-13 3.1E-18 151.1 11.8 140 25-174 140-296 (968)
3 PLN00113 leucine-rich repeat r 99.5 1.2E-13 2.6E-18 151.7 11.1 163 2-174 140-320 (968)
4 KOG0617 Ras suppressor protein 99.3 2.7E-14 6E-19 123.5 -4.1 115 2-121 56-170 (264)
5 KOG0444 Cytoskeletal regulator 99.2 1.5E-12 3.3E-17 131.0 -2.0 96 23-123 220-315 (1255)
6 KOG0444 Cytoskeletal regulator 99.1 5.9E-12 1.3E-16 126.8 0.2 106 2-110 78-186 (1255)
7 KOG0617 Ras suppressor protein 99.1 1.8E-12 3.8E-17 112.3 -3.1 124 2-137 33-158 (264)
8 PLN03210 Resistant to P. syrin 99.1 3E-10 6.6E-15 127.1 13.4 121 3-126 612-733 (1153)
9 PF14580 LRR_9: Leucine-rich r 99.0 1.1E-10 2.5E-15 103.0 3.3 126 3-137 20-148 (175)
10 PLN03150 hypothetical protein; 99.0 8.2E-10 1.8E-14 116.1 8.5 88 27-115 420-508 (623)
11 PLN03150 hypothetical protein; 99.0 1.3E-09 2.9E-14 114.5 9.1 112 4-116 420-534 (623)
12 PRK15370 E3 ubiquitin-protein 99.0 2.2E-09 4.8E-14 114.3 10.6 113 3-127 200-313 (754)
13 PRK15387 E3 ubiquitin-protein 99.0 2.1E-09 4.5E-14 114.3 9.5 152 3-174 283-457 (788)
14 KOG4194 Membrane glycoprotein 98.9 2.5E-10 5.3E-15 114.6 1.8 85 23-109 147-233 (873)
15 KOG4194 Membrane glycoprotein 98.9 1.3E-10 2.9E-15 116.5 -0.3 113 1-114 268-382 (873)
16 PRK15370 E3 ubiquitin-protein 98.9 3.6E-09 7.8E-14 112.7 10.0 115 2-128 220-335 (754)
17 PRK15387 E3 ubiquitin-protein 98.9 8.4E-09 1.8E-13 109.7 12.1 17 74-90 302-318 (788)
18 KOG0472 Leucine-rich repeat pr 98.7 9E-11 2E-15 113.3 -9.3 165 4-188 47-230 (565)
19 KOG0472 Leucine-rich repeat pr 98.7 3.4E-09 7.3E-14 102.6 0.6 119 7-137 417-536 (565)
20 KOG0618 Serine/threonine phosp 98.7 1.2E-09 2.7E-14 114.5 -3.3 125 2-130 359-488 (1081)
21 PF13855 LRR_8: Leucine rich r 98.6 5.7E-08 1.2E-12 70.5 3.4 58 49-108 1-60 (61)
22 PF14580 LRR_9: Leucine-rich r 98.5 6.8E-08 1.5E-12 85.4 3.8 104 1-106 41-149 (175)
23 KOG0532 Leucine-rich repeat (L 98.5 8.4E-09 1.8E-13 103.5 -3.0 146 5-174 101-246 (722)
24 PF13855 LRR_8: Leucine rich r 98.5 1.2E-07 2.7E-12 68.7 3.1 61 25-86 1-61 (61)
25 COG4886 Leucine-rich repeat (L 98.4 1.6E-07 3.5E-12 93.1 4.1 100 25-128 116-219 (394)
26 cd00116 LRR_RI Leucine-rich re 98.4 2.7E-08 5.9E-13 95.0 -1.5 109 2-110 51-178 (319)
27 cd00116 LRR_RI Leucine-rich re 98.4 6.1E-08 1.3E-12 92.6 -0.5 108 2-110 23-150 (319)
28 KOG0618 Serine/threonine phosp 98.4 4.7E-08 1E-12 102.9 -1.7 109 3-114 46-154 (1081)
29 KOG1259 Nischarin, modulator o 98.3 5.5E-08 1.2E-12 91.2 -1.4 102 3-109 285-386 (490)
30 KOG0532 Leucine-rich repeat (L 98.3 9.8E-08 2.1E-12 96.0 0.2 80 25-108 166-245 (722)
31 PRK15386 type III secretion pr 98.3 3.7E-06 8E-11 83.3 11.2 114 1-127 51-186 (426)
32 KOG1259 Nischarin, modulator o 98.3 8.7E-08 1.9E-12 89.9 -0.4 78 27-108 286-363 (490)
33 COG4886 Leucine-rich repeat (L 98.2 4.7E-07 1E-11 89.7 1.4 106 2-110 116-222 (394)
34 KOG4658 Apoptotic ATPase [Sign 98.1 1.6E-06 3.4E-11 94.2 4.2 108 4-114 525-635 (889)
35 PF12799 LRR_4: Leucine Rich r 98.1 3.8E-06 8.3E-11 56.9 3.3 34 75-108 2-35 (44)
36 PF12799 LRR_4: Leucine Rich r 98.0 7.4E-06 1.6E-10 55.5 3.6 41 49-91 1-41 (44)
37 KOG4658 Apoptotic ATPase [Sign 97.9 3.9E-06 8.6E-11 91.1 2.6 105 2-108 545-653 (889)
38 KOG4579 Leucine-rich repeat (L 97.9 6E-07 1.3E-11 75.5 -4.4 104 4-110 29-136 (177)
39 KOG3207 Beta-tubulin folding c 97.8 3.9E-06 8.4E-11 82.4 0.1 108 1-108 145-257 (505)
40 KOG4237 Extracellular matrix p 97.8 1.7E-06 3.7E-11 83.9 -3.6 81 27-108 69-151 (498)
41 KOG1644 U2-associated snRNP A' 97.8 5.9E-05 1.3E-09 67.5 6.3 124 5-137 22-148 (233)
42 PRK15386 type III secretion pr 97.7 8.5E-05 1.8E-09 73.8 7.7 117 25-159 52-183 (426)
43 KOG0531 Protein phosphatase 1, 97.7 1.7E-05 3.7E-10 79.5 1.7 102 2-108 95-197 (414)
44 KOG4237 Extracellular matrix p 97.6 1.4E-05 2.9E-10 77.8 0.7 86 22-108 271-357 (498)
45 KOG3207 Beta-tubulin folding c 97.6 2.1E-05 4.6E-10 77.3 1.7 107 1-109 196-313 (505)
46 KOG0531 Protein phosphatase 1, 97.5 2.8E-05 6E-10 78.0 0.7 104 2-110 72-175 (414)
47 KOG1859 Leucine-rich repeat pr 97.4 5.4E-06 1.2E-10 85.8 -5.7 82 23-109 185-266 (1096)
48 KOG4579 Leucine-rich repeat (L 97.4 1.1E-05 2.4E-10 68.1 -3.1 104 3-109 54-158 (177)
49 KOG1859 Leucine-rich repeat pr 97.4 4.7E-06 1E-10 86.3 -6.4 103 1-109 186-291 (1096)
50 KOG1644 U2-associated snRNP A' 97.2 0.00058 1.3E-08 61.2 5.2 103 3-106 43-149 (233)
51 KOG3665 ZYG-1-like serine/thre 97.2 0.00013 2.9E-09 77.5 1.3 106 2-110 122-233 (699)
52 KOG2739 Leucine-rich acidic nu 97.1 0.00026 5.6E-09 65.5 2.4 83 25-110 43-129 (260)
53 KOG3665 ZYG-1-like serine/thre 96.8 0.00086 1.9E-08 71.4 3.2 109 1-111 147-264 (699)
54 KOG1909 Ran GTPase-activating 96.7 0.0004 8.8E-09 66.7 -0.0 86 24-109 212-310 (382)
55 KOG2739 Leucine-rich acidic nu 96.4 0.0019 4.1E-08 59.9 2.6 102 3-108 44-154 (260)
56 KOG2982 Uncharacterized conser 96.4 0.0057 1.2E-07 58.1 5.3 59 1-59 96-156 (418)
57 KOG1909 Ran GTPase-activating 96.2 0.0024 5.3E-08 61.5 2.3 109 2-110 92-226 (382)
58 PF00560 LRR_1: Leucine Rich R 96.0 0.0024 5.2E-08 36.4 0.6 20 76-95 2-21 (22)
59 KOG2120 SCF ubiquitin ligase, 95.3 0.0009 1.9E-08 63.4 -4.6 109 46-169 257-370 (419)
60 KOG2982 Uncharacterized conser 95.0 0.0082 1.8E-07 57.0 0.7 81 26-108 72-157 (418)
61 KOG2120 SCF ubiquitin ligase, 95.0 0.0013 2.8E-08 62.3 -4.6 109 2-110 234-351 (419)
62 PF13306 LRR_5: Leucine rich r 94.8 0.11 2.3E-06 42.5 6.9 76 25-105 12-89 (129)
63 PF00560 LRR_1: Leucine Rich R 94.6 0.01 2.3E-07 33.7 0.2 21 50-72 1-21 (22)
64 KOG2123 Uncharacterized conser 94.5 0.001 2.2E-08 62.4 -6.4 62 46-110 38-101 (388)
65 KOG2123 Uncharacterized conser 94.3 0.0022 4.8E-08 60.2 -4.8 97 2-103 19-123 (388)
66 PF13504 LRR_7: Leucine rich r 94.2 0.033 7.2E-07 29.6 1.5 16 75-90 2-17 (17)
67 KOG0473 Leucine-rich repeat pr 93.7 0.0012 2.5E-08 60.6 -7.7 86 22-110 39-124 (326)
68 smart00370 LRR Leucine-rich re 92.9 0.099 2.2E-06 30.7 2.3 21 73-93 1-21 (26)
69 smart00369 LRR_TYP Leucine-ric 92.9 0.099 2.2E-06 30.7 2.3 21 73-93 1-21 (26)
70 PF13504 LRR_7: Leucine rich r 90.7 0.15 3.2E-06 27.1 1.2 14 49-62 1-14 (17)
71 COG5238 RNA1 Ran GTPase-activa 90.4 0.39 8.5E-06 45.4 4.5 38 24-61 91-132 (388)
72 KOG1947 Leucine rich repeat pr 89.9 0.044 9.6E-07 55.0 -2.4 128 2-136 188-328 (482)
73 PF13306 LRR_5: Leucine rich r 86.8 1.7 3.7E-05 35.2 5.7 116 2-132 12-129 (129)
74 KOG0473 Leucine-rich repeat pr 85.4 0.021 4.6E-07 52.5 -6.9 82 3-87 43-124 (326)
75 KOG1947 Leucine rich repeat pr 84.2 0.13 2.8E-06 51.5 -2.7 137 1-137 213-370 (482)
76 smart00370 LRR Leucine-rich re 83.2 0.89 1.9E-05 26.5 1.7 21 48-70 1-21 (26)
77 smart00369 LRR_TYP Leucine-ric 83.2 0.89 1.9E-05 26.5 1.7 21 48-70 1-21 (26)
78 COG5238 RNA1 Ran GTPase-activa 82.5 0.75 1.6E-05 43.6 1.8 108 1-109 29-169 (388)
79 smart00364 LRR_BAC Leucine-ric 79.1 1.2 2.6E-05 26.5 1.2 17 75-91 3-19 (26)
80 smart00365 LRR_SD22 Leucine-ri 75.5 2.3 5E-05 25.3 1.8 14 74-87 2-15 (26)
81 KOG3864 Uncharacterized conser 63.1 0.98 2.1E-05 40.8 -2.4 80 27-106 103-185 (221)
82 PF13516 LRR_6: Leucine Rich r 59.7 5.4 0.00012 22.6 1.1 13 1-13 1-13 (24)
83 smart00368 LRR_RI Leucine rich 51.9 12 0.00026 22.3 1.7 14 74-87 2-15 (28)
84 KOG4341 F-box protein containi 44.3 15 0.00032 37.0 2.0 129 2-137 294-434 (483)
85 smart00367 LRR_CC Leucine-rich 42.1 15 0.00032 21.3 1.1 13 1-13 1-13 (26)
86 KOG3763 mRNA export factor TAP 34.4 18 0.00039 37.5 0.9 58 26-87 219-283 (585)
87 KOG4341 F-box protein containi 30.8 15 0.00033 36.9 -0.3 108 2-109 320-438 (483)
88 KOG4308 LRR-containing protein 26.8 2.5 5.4E-05 43.4 -6.8 107 3-110 88-217 (478)
89 KOG3864 Uncharacterized conser 24.7 38 0.00081 30.9 1.2 58 50-108 102-162 (221)
90 TIGR00864 PCC polycystin catio 22.3 59 0.0013 40.2 2.4 31 55-87 1-32 (2740)
91 KOG3763 mRNA export factor TAP 21.5 35 0.00075 35.5 0.4 62 2-63 218-284 (585)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=2.4e-23 Score=231.31 Aligned_cols=261 Identities=19% Similarity=0.211 Sum_probs=170.5
Q ss_pred CccEEEeeCCCCCCCCCC-cCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEc
Q 040119 3 NLKELSFRGCKGSPSSAS-WFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHL 81 (366)
Q Consensus 3 ~L~~L~Ls~n~~~~~~~~-~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~L 81 (366)
+|+.|+|++|......|. ...+++|+.|++++|...+.+|..+ ++++|+.|+|++|... ..+|.. ..+|+.|+|
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L-~~~p~~---~~nL~~L~L 853 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRL-RTFPDI---STNISDLNL 853 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcc-cccccc---ccccCEeEC
Confidence 556666666653332222 2334556666666654444566544 5666666666666554 344432 357888899
Q ss_pred cCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCc---ccceecccCCcCccEeeCC---------------------
Q 040119 82 SGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPA---SIHGIFLDGCVSLETLSDG--------------------- 137 (366)
Q Consensus 82 s~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~---~L~~L~~~~c~sL~~l~~~--------------------- 137 (366)
++|.|+.+|.++..+++|+.|+|++|+.++.+|..+. .|+.+++++|.+|..+.+.
T Consensus 854 s~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~ 933 (1153)
T PLN03210 854 SRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTV 933 (1153)
T ss_pred CCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchh
Confidence 9999999999999999999999999999988886544 4566789999999865442
Q ss_pred --CCCCc----------------ccccCCCCCCcccccCCCCCceEE-EECCCCCCCCCCeeeeeeEEEEecCCCCCCCC
Q 040119 138 --YWRDC----------------SIVVPGSEIPEWFEYQNNEGSSIT-ISTPPKTYKNHKLVGYAMCCVFRVPKYSLPYY 198 (366)
Q Consensus 138 --~f~~~----------------~~~l~g~~iP~~f~~~~~~g~~~~-l~L~~n~~~~~~~~gf~~c~v~s~~~~~~~~~ 198 (366)
.|.+| .+.+||.++|+||.|++ .|++++ +.+++.|+ ...+.||++|+|+++.+.. ..
T Consensus 934 ~l~f~nC~~L~~~a~l~~~~~~~~~~l~g~evp~~f~hr~-~g~sl~~i~l~~~~~-~~~~~~f~~c~v~~~~~~~--~~ 1009 (1153)
T PLN03210 934 CINFINCFNLDQEALLQQQSIFKQLILSGEEVPSYFTHRT-TGASLTNIPLLHISP-CQPFFRFRACAVVDSESFF--II 1009 (1153)
T ss_pred ccccccccCCCchhhhcccccceEEECCCccCchhccCCc-ccceeeeeccCCccc-CCCccceEEEEEEecCccc--cC
Confidence 35666 35789999999999999 999998 99999898 7789999999999874321 11
Q ss_pred CCCCCCCeEEEEEecCCCCCCCcceEEeeccCCcCCCcEEEEEEeCC-----------CeeEEEEEe-----CCCCeEeE
Q 040119 199 NRWSPDPVHMLSIYSKPTTSGFSGFEFRKQIGQAMSDHLFLYYQNRG-----------AISEVEFSS-----PSGLELKR 262 (366)
Q Consensus 199 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~sdHl~l~~~~~~-----------~~~~v~~~F-----~~~~~Vk~ 262 (366)
.....+.+.|++....|........ ..........+|+++|..... .++|+.++| ...++||+
T Consensus 1010 ~~~~~~~~~c~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 1088 (1153)
T PLN03210 1010 SVSFDIQVCCRFIDRLGNHFDSPYQ-PHVFSVTKKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFRLTNKNSQLKLKG 1088 (1153)
T ss_pred CCceeEEEEEEEECCCCCccccCCC-ceeEeeeccccceEEecccccccccccchhccCCceeeEEEEEecCCCCeEEEe
Confidence 1233456777777633322110000 000111335667766532211 125655555 33469999
Q ss_pred eeEEEEEeccCC
Q 040119 263 CGVHPIYVHQGD 274 (366)
Q Consensus 263 CGv~liy~~~d~ 274 (366)
||||++| +.+.
T Consensus 1089 cg~~~~~-~~~~ 1099 (1153)
T PLN03210 1089 CGIRLSE-DDSS 1099 (1153)
T ss_pred eeEEEec-cCCC
Confidence 9999999 5443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.48 E-value=1.4e-13 Score=151.11 Aligned_cols=140 Identities=22% Similarity=0.271 Sum_probs=79.6
Q ss_pred CCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCC-ccchhhhCCCCccEEE
Q 040119 25 FPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFF-TLPASIYRLSKLSKIF 103 (366)
Q Consensus 25 ~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~-~lP~~i~~L~~L~~L~ 103 (366)
++|+.|++++|.+.+.+|..++++++|+.|+|++|.+. +.+|..++++++|++|+|++|.+. .+|..++++++|+.|+
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV-GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc-ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 44555555555555555666666666666666666665 556666666666666666666655 4566666666666666
Q ss_pred ccCCcCccCCCCC---CcccceecccC-------------CcCccEeeCCCCCCcccccCCCCCCcccccCCCCCceEEE
Q 040119 104 LKDCKMLQNLPRL---PASIHGIFLDG-------------CVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGSSITI 167 (366)
Q Consensus 104 L~~n~~l~~lp~l---p~~L~~L~~~~-------------c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~~g~~~~l 167 (366)
|++|++.+.+|.. ..+|+.|++++ +++|+.|++. .+.+.| .+|.+|.... ++..+
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~-----~n~l~~-~~p~~l~~l~---~L~~L 289 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY-----QNKLSG-PIPPSIFSLQ---KLISL 289 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECc-----CCeeec-cCchhHhhcc---CcCEE
Confidence 6666655544421 12334443332 2233333333 223333 4777777666 67788
Q ss_pred ECCCCCC
Q 040119 168 STPPKTY 174 (366)
Q Consensus 168 ~L~~n~~ 174 (366)
+|+.|.+
T Consensus 290 ~Ls~n~l 296 (968)
T PLN00113 290 DLSDNSL 296 (968)
T ss_pred ECcCCee
Confidence 8887766
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.48 E-value=1.2e-13 Score=151.69 Aligned_cols=163 Identities=22% Similarity=0.243 Sum_probs=126.4
Q ss_pred CCccEEEeeCCCCCCCCC-CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 2 KNLKELSFRGCKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
++|++|+|++|......+ ....+.+|+.|++++|.+.+.+|..+.++++|++|+|++|.+. +.+|..++.+++|+.|+
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV-GQIPRELGQMKSLKWIY 218 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCc-CcCChHHcCcCCccEEE
Confidence 556666666666443323 2345677999999999998889999999999999999999998 88999999999999999
Q ss_pred ccCCCCC-ccchhhhCCCCccEEEccCCcCccCCCCC---CcccceecccCC-------------cCccEeeCCCCCCcc
Q 040119 81 LSGNNFF-TLPASIYRLSKLSKIFLKDCKMLQNLPRL---PASIHGIFLDGC-------------VSLETLSDGYWRDCS 143 (366)
Q Consensus 81 Ls~N~~~-~lP~~i~~L~~L~~L~L~~n~~l~~lp~l---p~~L~~L~~~~c-------------~sL~~l~~~~f~~~~ 143 (366)
|++|++. .+|..++++++|+.|++++|.+.+.+|.. ...|+.|+++++ ++|+.|+++ .
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls-----~ 293 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS-----D 293 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECc-----C
Confidence 9999988 78889999999999999999887766642 235666665543 456666665 3
Q ss_pred cccCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119 144 IVVPGSEIPEWFEYQNNEGSSITISTPPKTY 174 (366)
Q Consensus 144 ~~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~ 174 (366)
+.+.| .+|.+|.... ++..+++..|.+
T Consensus 294 n~l~~-~~p~~~~~l~---~L~~L~l~~n~~ 320 (968)
T PLN00113 294 NSLSG-EIPELVIQLQ---NLEILHLFSNNF 320 (968)
T ss_pred Ceecc-CCChhHcCCC---CCcEEECCCCcc
Confidence 34444 5899998777 788999998877
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.34 E-value=2.7e-14 Score=123.48 Aligned_cols=115 Identities=25% Similarity=0.398 Sum_probs=70.1
Q ss_pred CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEc
Q 040119 2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHL 81 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~L 81 (366)
.+|+.|++.+|++.......+.++.|+.|++..|.+. .+|..|+.++.|+.|||++|++.+..+|..|..|+.|+-|+|
T Consensus 56 ~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl 134 (264)
T KOG0617|consen 56 KNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYL 134 (264)
T ss_pred hhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHh
Confidence 4555566666554444444444555666666666655 566666666666666666666665556666666666666666
Q ss_pred cCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccc
Q 040119 82 SGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIH 121 (366)
Q Consensus 82 s~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~ 121 (366)
+.|.|..+|..+++|++|+.|.+.+|.++ .+|..++
T Consensus 135 ~dndfe~lp~dvg~lt~lqil~lrdndll----~lpkeig 170 (264)
T KOG0617|consen 135 GDNDFEILPPDVGKLTNLQILSLRDNDLL----SLPKEIG 170 (264)
T ss_pred cCCCcccCChhhhhhcceeEEeeccCchh----hCcHHHH
Confidence 66666667777777777777777777644 3444444
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.19 E-value=1.5e-12 Score=131.03 Aligned_cols=96 Identities=25% Similarity=0.406 Sum_probs=81.5
Q ss_pred CCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccchhhhCCCCccEE
Q 040119 23 LPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKI 102 (366)
Q Consensus 23 ~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~L 102 (366)
.+.+|..+++|.|.+. .+|..+.++.+|+.|+||+|.|++ +...++...+|++|+|++|.++.+|.++..|++|+.|
T Consensus 220 ~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite--L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kL 296 (1255)
T KOG0444|consen 220 DLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE--LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKL 296 (1255)
T ss_pred hhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee--eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHH
Confidence 3456788899999987 899999999999999999999976 7777788888999999999999999999999999999
Q ss_pred EccCCcCccCCCCCCccccee
Q 040119 103 FLKDCKMLQNLPRLPASIHGI 123 (366)
Q Consensus 103 ~L~~n~~l~~lp~lp~~L~~L 123 (366)
++.+|++. ...+|+.+..|
T Consensus 297 y~n~NkL~--FeGiPSGIGKL 315 (1255)
T KOG0444|consen 297 YANNNKLT--FEGIPSGIGKL 315 (1255)
T ss_pred HhccCccc--ccCCccchhhh
Confidence 99999865 45667766554
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.15 E-value=5.9e-12 Score=126.83 Aligned_cols=106 Identities=25% Similarity=0.317 Sum_probs=72.2
Q ss_pred CCccEEEeeCCCCC--CCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCcc-CCCCCCCCE
Q 040119 2 KNLKELSFRGCKGS--PSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSG-IGNLCSLEE 78 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~--~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~-i~~L~sL~~ 78 (366)
+.|+.+++..|+.. ..++....+.-|+.|+||+|.+. ++|..+..-+++-.|+||+|+|. .||.. +-+|+-|-.
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie--tIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE--TIPNSLFINLTDLLF 154 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc--cCCchHHHhhHhHhh
Confidence 44445555555421 11122223344777888888876 77877777778888888888883 47765 457777888
Q ss_pred EEccCCCCCccchhhhCCCCccEEEccCCcCc
Q 040119 79 LHLSGNNFFTLPASIYRLSKLSKIFLKDCKML 110 (366)
Q Consensus 79 L~Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l 110 (366)
|+|++|.+..+|+.+..|.+|+.|.|++|++.
T Consensus 155 LDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 155 LDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred hccccchhhhcCHHHHHHhhhhhhhcCCChhh
Confidence 88888888888888888888888888888753
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.15 E-value=1.8e-12 Score=112.33 Aligned_cols=124 Identities=25% Similarity=0.395 Sum_probs=101.2
Q ss_pred CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEc
Q 040119 2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHL 81 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~L 81 (366)
.++..|.|++|+..+-.|....+.+|+.|++.+|++. .+|.+++.|++|+.|+++-|++. .+|..||.++.|+.|||
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~--~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN--ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh--cCccccCCCchhhhhhc
Confidence 4566788888887777777777888899999999987 88888999999999999998884 48999999999999999
Q ss_pred cCCCCC--ccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119 82 SGNNFF--TLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG 137 (366)
Q Consensus 82 s~N~~~--~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~ 137 (366)
..|++. .+|..+..++.|+-|+|++|.+- -+|+.+. .+++|+.+.+.
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe----~lp~dvg-----~lt~lqil~lr 158 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE----ILPPDVG-----KLTNLQILSLR 158 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcc----cCChhhh-----hhcceeEEeec
Confidence 999887 78888888888999999988743 4566665 66677777654
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.14 E-value=3e-10 Score=127.06 Aligned_cols=121 Identities=27% Similarity=0.353 Sum_probs=64.4
Q ss_pred CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEcc
Q 040119 3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLS 82 (366)
Q Consensus 3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls 82 (366)
+|+.|+|.+|+..........+.+|+.|+++++.....+|. +..+++|+.|+|++|... ..+|..++.|++|+.|+|+
T Consensus 612 ~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 612 NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred CCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCC
Confidence 44455555544222111122344555666655543334553 555666666666665544 4566666666666666666
Q ss_pred CC-CCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceeccc
Q 040119 83 GN-NFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLD 126 (366)
Q Consensus 83 ~N-~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~ 126 (366)
+| ++..+|..+ ++++|+.|++++|..++.+|..+.+|+.|++.
T Consensus 690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~ 733 (1153)
T PLN03210 690 RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLD 733 (1153)
T ss_pred CCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecC
Confidence 53 345556544 55666666666666555555555555555543
No 9
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.04 E-value=1.1e-10 Score=102.98 Aligned_cols=126 Identities=26% Similarity=0.316 Sum_probs=52.7
Q ss_pred CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccC-CCCCCCCEEEc
Q 040119 3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHL 81 (366)
Q Consensus 3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i-~~L~sL~~L~L 81 (366)
+++.|+|++|.+.........+..|+.|++++|.+. .++. +..++.|+.|+|++|.|+. +++.+ ..+++|+.|+|
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~-~l~~-l~~L~~L~~L~L~~N~I~~--i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQIT-KLEG-LPGLPRLKTLDLSNNRISS--ISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S---TT-----TT--EEE--SS---S---CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCc-cccC-ccChhhhhhcccCCCCCCc--cccchHHhCCcCCEEEC
Confidence 578899999986655444445677999999999997 6654 8889999999999999964 66554 35889999999
Q ss_pred cCCCCCccc--hhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119 82 SGNNFFTLP--ASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG 137 (366)
Q Consensus 82 s~N~~~~lP--~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~ 137 (366)
++|+|..+- ..+..+++|+.|+|.+|+.... ..-+...+..+++|+.|+..
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-----~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-----KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-----TTHHHHHHHH-TT-SEETTE
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccch-----hhHHHHHHHHcChhheeCCE
Confidence 999998554 4677889999999999986532 13333445578888888754
No 10
>PLN03150 hypothetical protein; Provisional
Probab=99.00 E-value=8.2e-10 Score=116.08 Aligned_cols=88 Identities=27% Similarity=0.434 Sum_probs=83.9
Q ss_pred ccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCC-ccchhhhCCCCccEEEcc
Q 040119 27 INLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFF-TLPASIYRLSKLSKIFLK 105 (366)
Q Consensus 27 L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~-~lP~~i~~L~~L~~L~L~ 105 (366)
+..|+|++|.+.+.+|..+..|++|+.|+|++|++. |.+|..++.+++|+.|+|++|++. .+|..+++|++|+.|+|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~-g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR-GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCccc-CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 778999999999999999999999999999999998 899999999999999999999998 899999999999999999
Q ss_pred CCcCccCCCC
Q 040119 106 DCKMLQNLPR 115 (366)
Q Consensus 106 ~n~~l~~lp~ 115 (366)
+|++.+.+|.
T Consensus 499 ~N~l~g~iP~ 508 (623)
T PLN03150 499 GNSLSGRVPA 508 (623)
T ss_pred CCcccccCCh
Confidence 9999887764
No 11
>PLN03150 hypothetical protein; Provisional
Probab=98.98 E-value=1.3e-09 Score=114.48 Aligned_cols=112 Identities=25% Similarity=0.344 Sum_probs=96.6
Q ss_pred ccEEEeeCCCCCCCCCC-cCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEcc
Q 040119 4 LKELSFRGCKGSPSSAS-WFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLS 82 (366)
Q Consensus 4 L~~L~Ls~n~~~~~~~~-~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls 82 (366)
++.|+|++|......+. ...+.+|+.|+|++|.+.+.+|..+..+++|+.|+|++|+++ |.+|..++.|++|+.|+|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~ls-g~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN-GSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCC-CCCchHHhcCCCCCEEECc
Confidence 67899999986544443 445678999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCCCC-ccchhhhCC-CCccEEEccCCcCccCCCCC
Q 040119 83 GNNFF-TLPASIYRL-SKLSKIFLKDCKMLQNLPRL 116 (366)
Q Consensus 83 ~N~~~-~lP~~i~~L-~~L~~L~L~~n~~l~~lp~l 116 (366)
+|+++ .+|..++.+ .++..+++.+|..+...|.+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l 534 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGL 534 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCC
Confidence 99999 899988874 47788999999877655543
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.97 E-value=2.2e-09 Score=114.31 Aligned_cols=113 Identities=20% Similarity=0.333 Sum_probs=58.3
Q ss_pred CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEcc
Q 040119 3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLS 82 (366)
Q Consensus 3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls 82 (366)
+|+.|+|++|++..- +. ....+|+.|++++|.+. .+|..+. .+|+.|+|++|++.+ +|..+. ++|+.|+|+
T Consensus 200 ~L~~L~Ls~N~LtsL-P~-~l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~--LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 200 QITTLILDNNELKSL-PE-NLQGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITE--LPERLP--SALQSLDLF 270 (754)
T ss_pred CCcEEEecCCCCCcC-Ch-hhccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccCc--CChhHh--CCCCEEECc
Confidence 455666666653321 11 11235666666666655 4554332 356666666666643 555443 356666666
Q ss_pred CCCCCccchhhhCCCCccEEEccCCcCccCCCC-CCcccceecccC
Q 040119 83 GNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPR-LPASIHGIFLDG 127 (366)
Q Consensus 83 ~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~-lp~~L~~L~~~~ 127 (366)
+|+++.+|..+. .+|+.|+|++|++.. +|. +|.+|+.|++++
T Consensus 271 ~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~ 313 (754)
T PRK15370 271 HNKISCLPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQS 313 (754)
T ss_pred CCccCccccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcC
Confidence 666666665442 356666666665432 332 344455555443
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.95 E-value=2.1e-09 Score=114.32 Aligned_cols=152 Identities=24% Similarity=0.295 Sum_probs=81.2
Q ss_pred CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCC-----------------CCCcEEEeecCCCCCCC
Q 040119 3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGL-----------------CSLTKLDISYCDLGEGA 65 (366)
Q Consensus 3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L-----------------~~L~~L~Ls~n~l~~~~ 65 (366)
+|+.|+|++|++.... ...++|+.|++++|.+. .+|.....| .+|+.|+|++|+|..
T Consensus 283 ~L~~L~Ls~N~Lt~LP---~~p~~L~~LdLS~N~L~-~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-- 356 (788)
T PRK15387 283 GLCKLWIFGNQLTSLP---VLPPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-- 356 (788)
T ss_pred hcCEEECcCCcccccc---ccccccceeECCCCccc-cCCCCcccccccccccCccccccccccccceEecCCCccCC--
Confidence 4555555555533211 12345777888887776 444421110 234555555555532
Q ss_pred CCccCCCCCCCCEEEccCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCc---
Q 040119 66 IPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDC--- 142 (366)
Q Consensus 66 lP~~i~~L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~--- 142 (366)
+|... .+|+.|++++|.|+.+|.. ..+|+.|+|++|++. .+|.+|+.|+.|+++++. |..++.. +.+.
T Consensus 357 LP~lp---~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt-~LP~l~s~L~~LdLS~N~-LssIP~l-~~~L~~L 427 (788)
T PRK15387 357 LPTLP---SELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLT-SLPVLPSELKELMVSGNR-LTSLPML-PSGLLSL 427 (788)
T ss_pred CCCCC---cccceehhhccccccCccc---ccccceEEecCCccc-CCCCcccCCCEEEccCCc-CCCCCcc-hhhhhhh
Confidence 44321 2344455555555555432 235677777777644 467667777777776653 3333211 0000
Q ss_pred ---ccccCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119 143 ---SIVVPGSEIPEWFEYQNNEGSSITISTPPKTY 174 (366)
Q Consensus 143 ---~~~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~ 174 (366)
.+.+ ..+|..|.... ++..++|..|.+
T Consensus 428 ~Ls~NqL--t~LP~sl~~L~---~L~~LdLs~N~L 457 (788)
T PRK15387 428 SVYRNQL--TRLPESLIHLS---SETTVNLEGNPL 457 (788)
T ss_pred hhccCcc--cccChHHhhcc---CCCeEECCCCCC
Confidence 2222 25888877666 778899999988
No 14
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.94 E-value=2.5e-10 Score=114.64 Aligned_cols=85 Identities=25% Similarity=0.328 Sum_probs=57.0
Q ss_pred CCCCccEEECcCCCCCCCCC-ccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccch-hhhCCCCcc
Q 040119 23 LPFPINLMRWSSDPMALSLP-SSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPA-SIYRLSKLS 100 (366)
Q Consensus 23 ~~~~L~~L~ls~n~l~~~lP-~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~-~i~~L~~L~ 100 (366)
.++.|+.|+|+.|.+. .+| +++..-.+++.|+|++|.|+. .--..|..|.+|..|.|++|.++.+|. .+++|++|+
T Consensus 147 ~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~-l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~ 224 (873)
T KOG4194|consen 147 ALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITT-LETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLE 224 (873)
T ss_pred hHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccc-cccccccccchheeeecccCcccccCHHHhhhcchhh
Confidence 3445666666666665 333 334555567777777777752 224557777788888888888888875 566688888
Q ss_pred EEEccCCcC
Q 040119 101 KIFLKDCKM 109 (366)
Q Consensus 101 ~L~L~~n~~ 109 (366)
.|+|..|++
T Consensus 225 ~LdLnrN~i 233 (873)
T KOG4194|consen 225 SLDLNRNRI 233 (873)
T ss_pred hhhccccce
Confidence 888888873
No 15
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.94 E-value=1.3e-10 Score=116.48 Aligned_cols=113 Identities=20% Similarity=0.187 Sum_probs=88.9
Q ss_pred CCCccEEEeeCCC-CCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119 1 MKNLKELSFRGCK-GSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL 79 (366)
Q Consensus 1 L~~L~~L~Ls~n~-~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L 79 (366)
|.++++|+|+.|+ ..+...+..++..|+.|+++.|.|...-++++...++|+.|+|++|+|+ .--+.+|..|+.|++|
T Consensus 268 l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~L 346 (873)
T KOG4194|consen 268 LEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEEL 346 (873)
T ss_pred ecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhh
Confidence 4578888888888 4455566677788888888888888777777888888899999998887 3445678888888888
Q ss_pred EccCCCCCccch-hhhCCCCccEEEccCCcCccCCC
Q 040119 80 HLSGNNFFTLPA-SIYRLSKLSKIFLKDCKMLQNLP 114 (366)
Q Consensus 80 ~Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~~l~~lp 114 (366)
+|+.|.+..+.+ .+..+++|+.|||++|.+...|.
T Consensus 347 nLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IE 382 (873)
T KOG4194|consen 347 NLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIE 382 (873)
T ss_pred cccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEe
Confidence 888888887764 67778888888888888776554
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.92 E-value=3.6e-09 Score=112.71 Aligned_cols=115 Identities=23% Similarity=0.328 Sum_probs=85.3
Q ss_pred CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEc
Q 040119 2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHL 81 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~L 81 (366)
++|+.|+|++|++... +. ....+|+.|++++|.+. .+|..+. ++|+.|+|++|++.. +|..+. .+|+.|+|
T Consensus 220 ~nL~~L~Ls~N~LtsL-P~-~l~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~--LP~~l~--~sL~~L~L 290 (754)
T PRK15370 220 GNIKTLYANSNQLTSI-PA-TLPDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC--LPENLP--EELRYLSV 290 (754)
T ss_pred cCCCEEECCCCccccC-Ch-hhhccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc--cccccC--CCCcEEEC
Confidence 5799999999985422 21 12346899999999997 7887664 589999999999963 887765 58999999
Q ss_pred cCCCCCccchhhhCCCCccEEEccCCcCccCCCC-CCcccceecccCC
Q 040119 82 SGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPR-LPASIHGIFLDGC 128 (366)
Q Consensus 82 s~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~-lp~~L~~L~~~~c 128 (366)
++|+|+.+|..+. ++|+.|++++|++.. +|. +|++|+.|++++|
T Consensus 291 s~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l~~sL~~L~Ls~N 335 (754)
T PRK15370 291 YDNSIRTLPAHLP--SGITHLNVQSNSLTA-LPETLPPGLKTLEAGEN 335 (754)
T ss_pred CCCccccCcccch--hhHHHHHhcCCcccc-CCccccccceeccccCC
Confidence 9999998886543 467778888877553 553 5667777776655
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.91 E-value=8.4e-09 Score=109.75 Aligned_cols=17 Identities=41% Similarity=0.624 Sum_probs=8.7
Q ss_pred CCCCEEEccCCCCCccc
Q 040119 74 CSLEELHLSGNNFFTLP 90 (366)
Q Consensus 74 ~sL~~L~Ls~N~~~~lP 90 (366)
++|+.|+|++|+|+.+|
T Consensus 302 ~~L~~LdLS~N~L~~Lp 318 (788)
T PRK15387 302 PGLQELSVSDNQLASLP 318 (788)
T ss_pred cccceeECCCCccccCC
Confidence 34555555555555444
No 18
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.72 E-value=9e-11 Score=113.25 Aligned_cols=165 Identities=22% Similarity=0.257 Sum_probs=88.9
Q ss_pred ccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccC
Q 040119 4 LKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSG 83 (366)
Q Consensus 4 L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~ 83 (366)
|..|.|++|......+....+..|.+|.+++|.+. ++|++++.+..++.|+.+.|++++ +|..++.+.+|..|+.+.
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~--lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSE--LPEQIGSLISLVKLDCSS 123 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhh--ccHHHhhhhhhhhhhccc
Confidence 44555666655544444444455556666666655 555555555555555555555543 555555555555555555
Q ss_pred CCCCccchhhhCCCCccEEEccCCcCccC-------------------CCCCCcccceecccCCcCccEeeCCCCCCccc
Q 040119 84 NNFFTLPASIYRLSKLSKIFLKDCKMLQN-------------------LPRLPASIHGIFLDGCVSLETLSDGYWRDCSI 144 (366)
Q Consensus 84 N~~~~lP~~i~~L~~L~~L~L~~n~~l~~-------------------lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~ 144 (366)
|.+.++|++|+.+-.|..|+..+|++... +.++|+..- ++++|+.++.. .+
T Consensus 124 n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-----~m~~L~~ld~~-----~N 193 (565)
T KOG0472|consen 124 NELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHI-----AMKRLKHLDCN-----SN 193 (565)
T ss_pred cceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHH-----HHHHHHhcccc-----hh
Confidence 55555555555555555555555542210 112333222 34455555543 33
Q ss_pred ccCCCCCCcccccCCCCCceEEEECCCCCCCCCCeeeeeeEEEE
Q 040119 145 VVPGSEIPEWFEYQNNEGSSITISTPPKTYKNHKLVGYAMCCVF 188 (366)
Q Consensus 145 ~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~~~~~~~gf~~c~v~ 188 (366)
.+ ..+|.-+.-.. ++..++|..|.+ ..+|.|--|-.+
T Consensus 194 ~L--~tlP~~lg~l~---~L~~LyL~~Nki--~~lPef~gcs~L 230 (565)
T KOG0472|consen 194 LL--ETLPPELGGLE---SLELLYLRRNKI--RFLPEFPGCSLL 230 (565)
T ss_pred hh--hcCChhhcchh---hhHHHHhhhccc--ccCCCCCccHHH
Confidence 33 24787777655 666777788877 555666666554
No 19
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.70 E-value=3.4e-09 Score=102.57 Aligned_cols=119 Identities=19% Similarity=0.281 Sum_probs=78.6
Q ss_pred EEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCC
Q 040119 7 LSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNF 86 (366)
Q Consensus 7 L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~ 86 (366)
+.+++|....+......+++|..|++++|.+. .+|..++.+..|+.|||+.|++.. +|..+..+..|+.+-.+.|++
T Consensus 417 l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~--lP~~~y~lq~lEtllas~nqi 493 (565)
T KOG0472|consen 417 LVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRM--LPECLYELQTLETLLASNNQI 493 (565)
T ss_pred HHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccccccccc--chHHHhhHHHHHHHHhccccc
Confidence 34566665555555566677888888888876 788888888888888888887743 666666666666665556666
Q ss_pred Cccchh-hhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119 87 FTLPAS-IYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG 137 (366)
Q Consensus 87 ~~lP~~-i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~ 137 (366)
..+|++ ++++.+|..|||.+|.+ ..+|+.++ +|++|+++.+.
T Consensus 494 ~~vd~~~l~nm~nL~tLDL~nNdl----q~IPp~Lg-----nmtnL~hLeL~ 536 (565)
T KOG0472|consen 494 GSVDPSGLKNMRNLTTLDLQNNDL----QQIPPILG-----NMTNLRHLELD 536 (565)
T ss_pred cccChHHhhhhhhcceeccCCCch----hhCChhhc-----cccceeEEEec
Confidence 666544 66666666666666652 23445555 66666666554
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.67 E-value=1.2e-09 Score=114.50 Aligned_cols=125 Identities=23% Similarity=0.338 Sum_probs=97.9
Q ss_pred CCccEEEeeCCCCCC-CCCCcCCCCCccEEECcCCCCCCCCCcc-CCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119 2 KNLKELSFRGCKGSP-SSASWFLPFPINLMRWSSDPMALSLPSS-LSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL 79 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~-~~~~~~~~~~L~~L~ls~n~l~~~lP~s-l~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L 79 (366)
+.|+.|+|.+|.+.. -.+......+|+.|+|++|.+. .+|++ +.+|..|+.|+||||.++. +|..+..+..|++|
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~--Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTT--LPDTVANLGRLHTL 435 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhhh--hhHHHHhhhhhHHH
Confidence 346777888887443 3445556678999999999886 67754 5778889999999999965 89888889999999
Q ss_pred EccCCCCCccchhhhCCCCccEEEccCCcCcc-CCC-CCC-cccceecccCCcC
Q 040119 80 HLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQ-NLP-RLP-ASIHGIFLDGCVS 130 (366)
Q Consensus 80 ~Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~-~lp-~lp-~~L~~L~~~~c~s 130 (366)
...+|.+..+| .+.+++.|+.+|++.|.+.. .+| .+| +.|++|++++.+.
T Consensus 436 ~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 436 RAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 99999999999 78899999999999988542 234 346 7899999888764
No 21
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.55 E-value=5.7e-08 Score=70.50 Aligned_cols=58 Identities=36% Similarity=0.502 Sum_probs=43.9
Q ss_pred CCCcEEEeecCCCCCCCCC-ccCCCCCCCCEEEccCCCCCccc-hhhhCCCCccEEEccCCc
Q 040119 49 CSLTKLDISYCDLGEGAIP-SGIGNLCSLEELHLSGNNFFTLP-ASIYRLSKLSKIFLKDCK 108 (366)
Q Consensus 49 ~~L~~L~Ls~n~l~~~~lP-~~i~~L~sL~~L~Ls~N~~~~lP-~~i~~L~~L~~L~L~~n~ 108 (366)
++|+.|+|++|++.+ +| ..|..+++|+.|++++|+++.+| ..+.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~--i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTE--IPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESE--ECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCc--cCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 467788888887753 55 56777888888888888888776 467788888888888876
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.52 E-value=6.8e-08 Score=85.37 Aligned_cols=104 Identities=19% Similarity=0.202 Sum_probs=53.2
Q ss_pred CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccC-CCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119 1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSL-SGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL 79 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl-~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L 79 (366)
|.+|+.|+|++|.+..- .....+..|+.|++++|.+. .++..+ ..+++|+.|+|++|+|.+-.--..+..+++|+.|
T Consensus 41 l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp -TT--EEE-TTS--S---TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred hcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 46899999999985543 34556788999999999998 665545 3689999999999999741223557789999999
Q ss_pred EccCCCCCccch----hhhCCCCccEEEccC
Q 040119 80 HLSGNNFFTLPA----SIYRLSKLSKIFLKD 106 (366)
Q Consensus 80 ~Ls~N~~~~lP~----~i~~L~~L~~L~L~~ 106 (366)
+|.+|.++..+. -|..+++|+.||-..
T Consensus 119 ~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 119 SLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp E-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred eccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 999999986653 477899999988543
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.50 E-value=8.4e-09 Score=103.54 Aligned_cols=146 Identities=21% Similarity=0.242 Sum_probs=94.0
Q ss_pred cEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCC
Q 040119 5 KELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGN 84 (366)
Q Consensus 5 ~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N 84 (366)
+.|.|..|.+.........+..|++|+++.|.++ .+|..+..|+ |+.|-+++|+++ .+|..++.+..|..|+.+.|
T Consensus 101 e~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~--~lp~~ig~~~tl~~ld~s~n 176 (722)
T KOG0532|consen 101 ESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT--SLPEEIGLLPTLAHLDVSKN 176 (722)
T ss_pred HHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc--cCCcccccchhHHHhhhhhh
Confidence 3344444443332233334445777777777776 6777666654 777777777774 47888887777888888888
Q ss_pred CCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCCCCCce
Q 040119 85 NFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGSS 164 (366)
Q Consensus 85 ~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~~g~~ 164 (366)
++.++|..+++|.+|+.|.+..|+++. +|..+. +=.|.+|+++ .+.+ ..||-.|.+++ .+
T Consensus 177 ei~slpsql~~l~slr~l~vrRn~l~~----lp~El~------~LpLi~lDfS-----cNki--s~iPv~fr~m~---~L 236 (722)
T KOG0532|consen 177 EIQSLPSQLGYLTSLRDLNVRRNHLED----LPEELC------SLPLIRLDFS-----CNKI--SYLPVDFRKMR---HL 236 (722)
T ss_pred hhhhchHHhhhHHHHHHHHHhhhhhhh----CCHHHh------CCceeeeecc-----cCce--eecchhhhhhh---hh
Confidence 888888888888888888887777553 333332 1234555555 1222 24777777776 77
Q ss_pred EEEECCCCCC
Q 040119 165 ITISTPPKTY 174 (366)
Q Consensus 165 ~~l~L~~n~~ 174 (366)
++|.|-.|.+
T Consensus 237 q~l~LenNPL 246 (722)
T KOG0532|consen 237 QVLQLENNPL 246 (722)
T ss_pred eeeeeccCCC
Confidence 8888877777
No 24
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.46 E-value=1.2e-07 Score=68.68 Aligned_cols=61 Identities=31% Similarity=0.390 Sum_probs=47.2
Q ss_pred CCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCC
Q 040119 25 FPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNF 86 (366)
Q Consensus 25 ~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~ 86 (366)
++|+.|+++.|.+...-+..|.++++|+.|+|++|++. ..-|..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCcC
Confidence 35777888888777444457788899999999999886 44456788899999999998875
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.42 E-value=1.6e-07 Score=93.10 Aligned_cols=100 Identities=26% Similarity=0.387 Sum_probs=58.9
Q ss_pred CCccEEECcCCCCCCCCCccCCCCC-CCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccchhhhCCCCccEEE
Q 040119 25 FPINLMRWSSDPMALSLPSSLSGLC-SLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIF 103 (366)
Q Consensus 25 ~~L~~L~ls~n~l~~~lP~sl~~L~-~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~L~ 103 (366)
..+..|.+..|.+. .+|.....+. +|+.|++++|.+.+ +|..++.++.|+.|+++.|++..+|...+.++.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 44666666666665 5555555553 66666666666643 55566666666666666666666666555666666666
Q ss_pred ccCCcCccCCCC---CCcccceecccCC
Q 040119 104 LKDCKMLQNLPR---LPASIHGIFLDGC 128 (366)
Q Consensus 104 L~~n~~l~~lp~---lp~~L~~L~~~~c 128 (366)
+++|++. .+|. .+..+..|.+++.
T Consensus 193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 193 LSGNKIS-DLPPEIELLSALEELDLSNN 219 (394)
T ss_pred ccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence 6666633 2443 3444555554444
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.42 E-value=2.7e-08 Score=95.02 Aligned_cols=109 Identities=19% Similarity=0.224 Sum_probs=58.5
Q ss_pred CCccEEEeeCCCCCC-CC------CCcCCCCCccEEECcCCCCCCCCCccCCCCCC---CcEEEeecCCCCCC---CCCc
Q 040119 2 KNLKELSFRGCKGSP-SS------ASWFLPFPINLMRWSSDPMALSLPSSLSGLCS---LTKLDISYCDLGEG---AIPS 68 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~-~~------~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~---L~~L~Ls~n~l~~~---~lP~ 68 (366)
++|++|+++++.... +. .......+|+.|++++|.+....+..+..+.+ |+.|++++|++... .+..
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 346666666665321 10 01122345666777766665444444444444 67777777666410 1223
Q ss_pred cCCCC-CCCCEEEccCCCCC-----ccchhhhCCCCccEEEccCCcCc
Q 040119 69 GIGNL-CSLEELHLSGNNFF-----TLPASIYRLSKLSKIFLKDCKML 110 (366)
Q Consensus 69 ~i~~L-~sL~~L~Ls~N~~~-----~lP~~i~~L~~L~~L~L~~n~~l 110 (366)
.+..+ ++|+.|+|++|.++ .++..+..+.+|+.|++++|.+.
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 34445 66667777766666 23445555666666666666644
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.37 E-value=6.1e-08 Score=92.58 Aligned_cols=108 Identities=23% Similarity=0.234 Sum_probs=66.6
Q ss_pred CCccEEEeeCCCCCCC-----CCCcCCCCCccEEECcCCCCCC------CCCccCCCCCCCcEEEeecCCCCCCCCCccC
Q 040119 2 KNLKELSFRGCKGSPS-----SASWFLPFPINLMRWSSDPMAL------SLPSSLSGLCSLTKLDISYCDLGEGAIPSGI 70 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~-----~~~~~~~~~L~~L~ls~n~l~~------~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i 70 (366)
++|+.|+|++|..... .......+.++.++++.+.+.+ .++..+..+++|+.|+|++|.+. +..+..+
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~ 101 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG-PDGCGVL 101 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC-hhHHHHH
Confidence 4577777777764221 1112233457777777776651 23345566777888888877775 4445555
Q ss_pred CCCCC---CCEEEccCCCCC-----ccchhhhCC-CCccEEEccCCcCc
Q 040119 71 GNLCS---LEELHLSGNNFF-----TLPASIYRL-SKLSKIFLKDCKML 110 (366)
Q Consensus 71 ~~L~s---L~~L~Ls~N~~~-----~lP~~i~~L-~~L~~L~L~~n~~l 110 (366)
..+.. |+.|++++|.+. .+...+..+ ++|+.|++++|.+.
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 44444 788888777776 233455666 77788888877755
No 28
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.35 E-value=4.7e-08 Score=102.90 Aligned_cols=109 Identities=26% Similarity=0.287 Sum_probs=84.5
Q ss_pred CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEcc
Q 040119 3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLS 82 (366)
Q Consensus 3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls 82 (366)
+|+.|+|++|....-......+..|+.|+++.|-+. .+|.+..++.+|++|+|.+|.+.. +|.++..+.+|+.|+++
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~~--lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQS--LPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhhc--CchhHHhhhcccccccc
Confidence 378888888874433333344566888888888886 888888888888888888888854 88888888888999999
Q ss_pred CCCCCccchhhhCCCCccEEEccCCcCccCCC
Q 040119 83 GNNFFTLPASIYRLSKLSKIFLKDCKMLQNLP 114 (366)
Q Consensus 83 ~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp 114 (366)
.|+|..+|..|..++.+..++.++|..++.++
T Consensus 123 ~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg 154 (1081)
T KOG0618|consen 123 FNHFGPIPLVIEVLTAEEELAASNNEKIQRLG 154 (1081)
T ss_pred hhccCCCchhHHhhhHHHHHhhhcchhhhhhc
Confidence 99888888888888888888888774444333
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.34 E-value=5.5e-08 Score=91.24 Aligned_cols=102 Identities=24% Similarity=0.217 Sum_probs=79.5
Q ss_pred CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEcc
Q 040119 3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLS 82 (366)
Q Consensus 3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls 82 (366)
.|+.|||++|.+..........+.++.|++++|.+. .+-. +..|++|+.|||++|.+++ +-..-..|-+.+.|.|+
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls~--~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLAE--CVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhHh--hhhhHhhhcCEeeeehh
Confidence 478899999986655555566688999999999986 4444 8889999999999999864 54444566677888888
Q ss_pred CCCCCccchhhhCCCCccEEEccCCcC
Q 040119 83 GNNFFTLPASIYRLSKLSKIFLKDCKM 109 (366)
Q Consensus 83 ~N~~~~lP~~i~~L~~L~~L~L~~n~~ 109 (366)
+|.|..+. .++.|.+|..||+++|++
T Consensus 361 ~N~iE~LS-GL~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 361 QNKIETLS-GLRKLYSLVNLDLSSNQI 386 (490)
T ss_pred hhhHhhhh-hhHhhhhheeccccccch
Confidence 88887665 577788888888888873
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.34 E-value=9.8e-08 Score=96.04 Aligned_cols=80 Identities=26% Similarity=0.383 Sum_probs=41.9
Q ss_pred CCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccchhhhCCCCccEEEc
Q 040119 25 FPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFL 104 (366)
Q Consensus 25 ~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~L~L 104 (366)
..|..|+.+.|.+. .+|+.++.|.+|+.|++..|++.. +|..++.| .|..||++.|++..||.+|.+|+.|++|-|
T Consensus 166 ~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~--lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 166 PTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED--LPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQL 241 (722)
T ss_pred hhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh--CCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeee
Confidence 33444444444443 444444445555555555555432 45544422 355566666666666666666666666666
Q ss_pred cCCc
Q 040119 105 KDCK 108 (366)
Q Consensus 105 ~~n~ 108 (366)
.+|.
T Consensus 242 enNP 245 (722)
T KOG0532|consen 242 ENNP 245 (722)
T ss_pred ccCC
Confidence 6655
No 31
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.34 E-value=3.7e-06 Score=83.31 Aligned_cols=114 Identities=22% Similarity=0.394 Sum_probs=76.2
Q ss_pred CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecC-CCCCCCCCccCCCCCCCCEE
Q 040119 1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYC-DLGEGAIPSGIGNLCSLEEL 79 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n-~l~~~~lP~~i~~L~sL~~L 79 (366)
+++++.|++++|.+..- | ....+|+.|.++++.-...+|..+ .++|+.|++++| .+ ..+|.. |+.|
T Consensus 51 ~~~l~~L~Is~c~L~sL-P--~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L--~sLP~s------Le~L 117 (426)
T PRK15386 51 ARASGRLYIKDCDIESL-P--VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEI--SGLPES------VRSL 117 (426)
T ss_pred hcCCCEEEeCCCCCccc-C--CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccc--cccccc------cceE
Confidence 35789999999963332 2 233569999998754444777655 358999999999 55 347754 6667
Q ss_pred EccCCC---CCccchhhhCCC------------------CccEEEccCCcCccCCCCCCcccceecccC
Q 040119 80 HLSGNN---FFTLPASIYRLS------------------KLSKIFLKDCKMLQNLPRLPASIHGIFLDG 127 (366)
Q Consensus 80 ~Ls~N~---~~~lP~~i~~L~------------------~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~ 127 (366)
++.++. +..+|.++..|. +|++|++.+|......+.+|.+|+.|++++
T Consensus 118 ~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~ 186 (426)
T PRK15386 118 EIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHI 186 (426)
T ss_pred EeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCcccccccCcEEEecc
Confidence 777665 457787765542 577777777775542234677777776654
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.33 E-value=8.7e-08 Score=89.94 Aligned_cols=78 Identities=19% Similarity=0.228 Sum_probs=63.7
Q ss_pred ccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccchhhhCCCCccEEEccC
Q 040119 27 INLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKD 106 (366)
Q Consensus 27 L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~L~L~~ 106 (366)
|+.++|++|.++ .+-.++.-++.++.|+++.|.+.+ + .++..|.+|+.|||++|.++++-.+=..|.+.+.|.|+.
T Consensus 286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~--v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT--V-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhccccccchh-hhhhhhhhccceeEEeccccceee--e-hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 778889999887 777778888888999999988873 3 347888888999999988887776666777888888888
Q ss_pred Cc
Q 040119 107 CK 108 (366)
Q Consensus 107 n~ 108 (366)
|.
T Consensus 362 N~ 363 (490)
T KOG1259|consen 362 NK 363 (490)
T ss_pred hh
Confidence 87
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.20 E-value=4.7e-07 Score=89.75 Aligned_cols=106 Identities=31% Similarity=0.433 Sum_probs=89.6
Q ss_pred CCccEEEeeCCCCCCCCCCcCCCC-CccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 2 KNLKELSFRGCKGSPSSASWFLPF-PINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~~~~~~~-~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
+.++.|++.+|......+...... +|+.|+++.|.+. .+|..+..++.|+.|++++|++.+ +|...+.++.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhhee
Confidence 468889999988655544444443 8999999999997 787778999999999999999976 888888899999999
Q ss_pred ccCCCCCccchhhhCCCCccEEEccCCcCc
Q 040119 81 LSGNNFFTLPASIYRLSKLSKIFLKDCKML 110 (366)
Q Consensus 81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l 110 (366)
+++|.+..+|..+..+..|+.|.+++|+..
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~ 222 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNSII 222 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCcce
Confidence 999999999988888888999999999633
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.14 E-value=1.6e-06 Score=94.17 Aligned_cols=108 Identities=23% Similarity=0.249 Sum_probs=78.2
Q ss_pred ccEEEeeCCCCCCCCCCcCCCCCccEEECcCCC--CCCCCCc-cCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 4 LKELSFRGCKGSPSSASWFLPFPINLMRWSSDP--MALSLPS-SLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 4 L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~--l~~~lP~-sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
.+.+.+-+|..... +.....+.|+.|-+..|. +. .++. .|..++.|+.|||++|.-. +.+|..|+.|-+|++|+
T Consensus 525 ~rr~s~~~~~~~~~-~~~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l-~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 525 VRRMSLMNNKIEHI-AGSSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSL-SKLPSSIGELVHLRYLD 601 (889)
T ss_pred eeEEEEeccchhhc-cCCCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCcc-CcCChHHhhhhhhhccc
Confidence 34555555542211 112233357777777775 44 3443 3677899999999988766 77899999999999999
Q ss_pred ccCCCCCccchhhhCCCCccEEEccCCcCccCCC
Q 040119 81 LSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLP 114 (366)
Q Consensus 81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp 114 (366)
|++..+..+|.++++|.+|.+|++..+..+..+|
T Consensus 602 L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~ 635 (889)
T KOG4658|consen 602 LSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP 635 (889)
T ss_pred ccCCCccccchHHHHHHhhheecccccccccccc
Confidence 9999999999999999999999998888766554
No 35
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.06 E-value=3.8e-06 Score=56.93 Aligned_cols=34 Identities=35% Similarity=0.518 Sum_probs=17.3
Q ss_pred CCCEEEccCCCCCccchhhhCCCCccEEEccCCc
Q 040119 75 SLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCK 108 (366)
Q Consensus 75 sL~~L~Ls~N~~~~lP~~i~~L~~L~~L~L~~n~ 108 (366)
+|++|+|++|+|+.+|..|.+|++|+.|++++|+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 4555555555555555445555555555555554
No 36
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=7.4e-06 Score=55.54 Aligned_cols=41 Identities=32% Similarity=0.502 Sum_probs=35.4
Q ss_pred CCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccch
Q 040119 49 CSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPA 91 (366)
Q Consensus 49 ~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~ 91 (366)
++|++|+|++|+|++ +|..+++|++|+.|++++|.|+.+|.
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCCCCcC
Confidence 479999999999975 99889999999999999999998763
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.95 E-value=3.9e-06 Score=91.14 Aligned_cols=105 Identities=25% Similarity=0.314 Sum_probs=87.6
Q ss_pred CCccEEEeeCCC---CCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCE
Q 040119 2 KNLKELSFRGCK---GSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEE 78 (366)
Q Consensus 2 ~~L~~L~Ls~n~---~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~ 78 (366)
+.|++|-+.+|. ...+...+..++.|++|+|++|.-.+.+|.+++.|-+|++|+|+++.+.. +|..+++|..|.+
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~--LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH--LPSGLGNLKKLIY 622 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc--cchHHHHHHhhhe
Confidence 468888888885 33333446778899999999998878999999999999999999999965 9999999999999
Q ss_pred EEccCCCCC-ccchhhhCCCCccEEEccCCc
Q 040119 79 LHLSGNNFF-TLPASIYRLSKLSKIFLKDCK 108 (366)
Q Consensus 79 L~Ls~N~~~-~lP~~i~~L~~L~~L~L~~n~ 108 (366)
|++..+... .+|.-+..|++|++|.+..-.
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccc
Confidence 999988755 556666669999999986543
No 38
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.85 E-value=6e-07 Score=75.54 Aligned_cols=104 Identities=17% Similarity=0.245 Sum_probs=80.3
Q ss_pred ccEEEeeCCCCC-CCCC--CcCCCCCccEEECcCCCCCCCCCccCCC-CCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119 4 LKELSFRGCKGS-PSSA--SWFLPFPINLMRWSSDPMALSLPSSLSG-LCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL 79 (366)
Q Consensus 4 L~~L~Ls~n~~~-~~~~--~~~~~~~L~~L~ls~n~l~~~lP~sl~~-L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L 79 (366)
+..|+|+.|++- .+.- .......|...++++|.+. .+|..|.. ++.+++|+|++|.|++ +|..+..++.|+.|
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISD--VPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhh--chHHHhhhHHhhhc
Confidence 456778888633 1111 1223345777899999987 78877755 4588999999999976 99889999999999
Q ss_pred EccCCCCCccchhhhCCCCccEEEccCCcCc
Q 040119 80 HLSGNNFFTLPASIYRLSKLSKIFLKDCKML 110 (366)
Q Consensus 80 ~Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l 110 (366)
+++.|.|...|.-|..|.+|..|+..+|.+.
T Consensus 106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 106 NLRFNPLNAEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccccCccccchHHHHHHHhHHHhcCCCCccc
Confidence 9999999999988888999999998888754
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=3.9e-06 Score=82.38 Aligned_cols=108 Identities=19% Similarity=0.118 Sum_probs=53.0
Q ss_pred CCCccEEEeeCCCCCCCCC---CcCCCCCccEEECcCCCCCCCCCccC-CCCCCCcEEEeecCCCCCCCCCccCCCCCCC
Q 040119 1 MKNLKELSFRGCKGSPSSA---SWFLPFPINLMRWSSDPMALSLPSSL-SGLCSLTKLDISYCDLGEGAIPSGIGNLCSL 76 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~---~~~~~~~L~~L~ls~n~l~~~lP~sl-~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL 76 (366)
|++++.|||+.|-+....+ ....+++|+.|+++.|.+....-+.. ..+++|+.|.|+.|.++...+-......++|
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl 224 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL 224 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence 4667777777775332222 12345667777777777642111111 2456677777777776532222222334455
Q ss_pred CEEEccCCC-CCccchhhhCCCCccEEEccCCc
Q 040119 77 EELHLSGNN-FFTLPASIYRLSKLSKIFLKDCK 108 (366)
Q Consensus 77 ~~L~Ls~N~-~~~lP~~i~~L~~L~~L~L~~n~ 108 (366)
+.|+|.+|+ +..--....-++.|+.|+|++|+
T Consensus 225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 225 EVLYLEANEIILIKATSTKILQTLQELDLSNNN 257 (505)
T ss_pred HHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence 555555552 11111122334445555555554
No 40
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.76 E-value=1.7e-06 Score=83.91 Aligned_cols=81 Identities=26% Similarity=0.368 Sum_probs=52.9
Q ss_pred ccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccC-CCCCccch-hhhCCCCccEEEc
Q 040119 27 INLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSG-NNFFTLPA-SIYRLSKLSKIFL 104 (366)
Q Consensus 27 L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~-N~~~~lP~-~i~~L~~L~~L~L 104 (366)
-..++|..|.|+..-|.+|+.+++|+.|||+.|+|+ ..-|..|..|.+|..|.+.+ |+|+.+|. .+++|..|+.|.+
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 456677777776444456667777777777777776 44467777777766666665 66777764 4566666666666
Q ss_pred cCCc
Q 040119 105 KDCK 108 (366)
Q Consensus 105 ~~n~ 108 (366)
.-|+
T Consensus 148 Nan~ 151 (498)
T KOG4237|consen 148 NANH 151 (498)
T ss_pred Chhh
Confidence 5555
No 41
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.76 E-value=5.9e-05 Score=67.46 Aligned_cols=124 Identities=20% Similarity=0.148 Sum_probs=87.0
Q ss_pred cEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCC-CCCCCCEEEccC
Q 040119 5 KELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIG-NLCSLEELHLSG 83 (366)
Q Consensus 5 ~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~-~L~sL~~L~Ls~ 83 (366)
+.++|.+.++...............++|+.|.+. .++. |..++.|.+|.|++|+|+. |-+.+. -+++|..|.|.+
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~-~l~~-lp~l~rL~tLll~nNrIt~--I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLR-KLDN-LPHLPRLHTLLLNNNRITR--IDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccccccccccchhhccccccccceecccccchh-hccc-CCCccccceEEecCCccee--eccchhhhccccceEEecC
Confidence 3566666664444333344455778999999985 5554 8889999999999999984 554544 456799999999
Q ss_pred CCCCccc--hhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119 84 NNFFTLP--ASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG 137 (366)
Q Consensus 84 N~~~~lP--~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~ 137 (366)
|+|..+- .-+..+++|++|.+-+|+.... ..-+.-.+.-.++|+.|++.
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k-----~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHK-----KNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcc-----cCceeEEEEecCcceEeehh
Confidence 9998664 2467788999999988875421 12333334466788888776
No 42
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.73 E-value=8.5e-05 Score=73.78 Aligned_cols=117 Identities=24% Similarity=0.368 Sum_probs=78.9
Q ss_pred CCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCC-CCCccchhhhCCCCccEEE
Q 040119 25 FPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGN-NFFTLPASIYRLSKLSKIF 103 (366)
Q Consensus 25 ~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N-~~~~lP~~i~~L~~L~~L~ 103 (366)
..+..|+++.|.+. .+|. + ..+|+.|.+++|.-. ..+|..+. .+|+.|++++| ++..+|.+ |+.|+
T Consensus 52 ~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nL-tsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNL-TTLPGSIP--EGLEKLTVCHCPEISGLPES------VRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCc-ccCCchhh--hhhhheEccCcccccccccc------cceEE
Confidence 56889999999886 7773 2 346999999997665 55787653 68999999998 77788864 56666
Q ss_pred ccCCcCccCCCCCCcccceecccCC-------------cCccEeeCCCCCCccc-ccCCCCCCcccccCC
Q 040119 104 LKDCKMLQNLPRLPASIHGIFLDGC-------------VSLETLSDGYWRDCSI-VVPGSEIPEWFEYQN 159 (366)
Q Consensus 104 L~~n~~l~~lp~lp~~L~~L~~~~c-------------~sL~~l~~~~f~~~~~-~l~g~~iP~~f~~~~ 159 (366)
+.++. ...++.+|++|+.|.+.+. ++|+.|.+. +|.. .+|+ .+|+.+.++.
T Consensus 119 L~~n~-~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is---~c~~i~LP~-~LP~SLk~L~ 183 (426)
T PRK15386 119 IKGSA-TDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLT---GCSNIILPE-KLPESLQSIT 183 (426)
T ss_pred eCCCC-CcccccCcchHhheeccccccccccccccccCCcccEEEec---CCCcccCcc-cccccCcEEE
Confidence 76554 3347788888888776321 356666654 3432 2343 3676555444
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.66 E-value=1.7e-05 Score=79.53 Aligned_cols=102 Identities=24% Similarity=0.231 Sum_probs=47.8
Q ss_pred CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEc
Q 040119 2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHL 81 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~L 81 (366)
++|+.|+|.+|++.........+.+|+.|++++|.|. .+.. +..++.|+.|++++|.|.. ...+..+.+|+.+++
T Consensus 95 ~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~-~i~~-l~~l~~L~~L~l~~N~i~~---~~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKIT-KLEG-LSTLTLLKELNLSGNLISD---ISGLESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccchhhcccchhhhhcchheeccccccc-cccc-hhhccchhhheeccCcchh---ccCCccchhhhcccC
Confidence 3455555555543332222333444555555555554 3322 4444445555555555542 223333555555555
Q ss_pred cCCCCCccchh-hhCCCCccEEEccCCc
Q 040119 82 SGNNFFTLPAS-IYRLSKLSKIFLKDCK 108 (366)
Q Consensus 82 s~N~~~~lP~~-i~~L~~L~~L~L~~n~ 108 (366)
++|.++.+... +..+.+|+.+++.+|.
T Consensus 170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 170 SYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred CcchhhhhhhhhhhhccchHHHhccCCc
Confidence 55555544432 3445555555555554
No 44
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.65 E-value=1.4e-05 Score=77.81 Aligned_cols=86 Identities=19% Similarity=0.168 Sum_probs=43.2
Q ss_pred CCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCcc-chhhhCCCCcc
Q 040119 22 FLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTL-PASIYRLSKLS 100 (366)
Q Consensus 22 ~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~l-P~~i~~L~~L~ 100 (366)
..+++|+.|+|++|.+++.-+.+|.++..|+.|.|..|+|.. .-...|..++.|+.|+|.+|+|+.+ |.++..+..|.
T Consensus 271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~-v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEF-VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS 349 (498)
T ss_pred hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHH-HHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence 344455555555555555445555555555555555555531 1123344555555555555555532 44455555555
Q ss_pred EEEccCCc
Q 040119 101 KIFLKDCK 108 (366)
Q Consensus 101 ~L~L~~n~ 108 (366)
.|+|-.|.
T Consensus 350 ~l~l~~Np 357 (498)
T KOG4237|consen 350 TLNLLSNP 357 (498)
T ss_pred eeehccCc
Confidence 55554444
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=2.1e-05 Score=77.32 Aligned_cols=107 Identities=21% Similarity=0.279 Sum_probs=77.5
Q ss_pred CCCccEEEeeCCCCCCCCC--CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCC--ccCCCCCCC
Q 040119 1 MKNLKELSFRGCKGSPSSA--SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIP--SGIGNLCSL 76 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~--~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP--~~i~~L~sL 76 (366)
++.|+.|.|+.|.+....- ....+++|+.|+|..|.....--.+...++.|+.|||++|++.+ .+ ..++.++.|
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~--~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID--FDQGYKVGTLPGL 273 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc--cccccccccccch
Confidence 4678899999998553211 22355788899999885333333345567889999999998864 55 567888899
Q ss_pred CEEEccCCCCCc--cchh-----hhCCCCccEEEccCCcC
Q 040119 77 EELHLSGNNFFT--LPAS-----IYRLSKLSKIFLKDCKM 109 (366)
Q Consensus 77 ~~L~Ls~N~~~~--lP~~-----i~~L~~L~~L~L~~n~~ 109 (366)
..|+++.+.+.+ +|.. ...+.+|++|++..|++
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 999999988884 3543 45678899999999885
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.51 E-value=2.8e-05 Score=78.03 Aligned_cols=104 Identities=23% Similarity=0.311 Sum_probs=72.0
Q ss_pred CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEc
Q 040119 2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHL 81 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~L 81 (366)
..++.+++..|.+.........+.+|+.|++..|.+. .+...+..+++|+.|+|++|.|.. + ..+..++.|+.|++
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~--i-~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITK--L-EGLSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccc--c-cchhhccchhhhee
Confidence 3455566666654432333445567888888888886 444436778888888888888863 3 34556677888888
Q ss_pred cCCCCCccchhhhCCCCccEEEccCCcCc
Q 040119 82 SGNNFFTLPASIYRLSKLSKIFLKDCKML 110 (366)
Q Consensus 82 s~N~~~~lP~~i~~L~~L~~L~L~~n~~l 110 (366)
++|.|+.++ .+..+..|+.+++++|.+.
T Consensus 148 ~~N~i~~~~-~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 148 SGNLISDIS-GLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred ccCcchhcc-CCccchhhhcccCCcchhh
Confidence 888888766 3455788888888888744
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.42 E-value=5.4e-06 Score=85.85 Aligned_cols=82 Identities=27% Similarity=0.293 Sum_probs=44.2
Q ss_pred CCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccchhhhCCCCccEE
Q 040119 23 LPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKI 102 (366)
Q Consensus 23 ~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~L 102 (366)
.++.|+.|+|++|++. .+- .+..|+.|+.|||++|.+.. +|.--..-..|..|.|++|.++++- .|.+|.+|+.|
T Consensus 185 ll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~~--vp~l~~~gc~L~~L~lrnN~l~tL~-gie~LksL~~L 259 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLRH--VPQLSMVGCKLQLLNLRNNALTTLR-GIENLKSLYGL 259 (1096)
T ss_pred HHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhcc--ccccchhhhhheeeeecccHHHhhh-hHHhhhhhhcc
Confidence 3344566666666664 332 45566666666666666643 4432111122566666666665554 45566666666
Q ss_pred EccCCcC
Q 040119 103 FLKDCKM 109 (366)
Q Consensus 103 ~L~~n~~ 109 (366)
||++|-+
T Consensus 260 DlsyNll 266 (1096)
T KOG1859|consen 260 DLSYNLL 266 (1096)
T ss_pred chhHhhh
Confidence 6666543
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.40 E-value=1.1e-05 Score=68.06 Aligned_cols=104 Identities=15% Similarity=0.169 Sum_probs=82.5
Q ss_pred CccEEEeeCCCCC-CCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEc
Q 040119 3 NLKELSFRGCKGS-PSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHL 81 (366)
Q Consensus 3 ~L~~L~Ls~n~~~-~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~L 81 (366)
.|+..+|++|.+. .|......++.++.|++.+|.+. .+|..+..++.|+.|+++.|.+.. .|.-|..|.+|-.|+.
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~--~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA--EPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc--chHHHHHHHhHHHhcC
Confidence 4677899999854 44445556677999999999998 899999999999999999999964 8988888999999999
Q ss_pred cCCCCCccchhhhCCCCccEEEccCCcC
Q 040119 82 SGNNFFTLPASIYRLSKLSKIFLKDCKM 109 (366)
Q Consensus 82 s~N~~~~lP~~i~~L~~L~~L~L~~n~~ 109 (366)
.+|.+..||..+..-+.+-..++.++.+
T Consensus 131 ~~na~~eid~dl~~s~~~al~~lgnepl 158 (177)
T KOG4579|consen 131 PENARAEIDVDLFYSSLPALIKLGNEPL 158 (177)
T ss_pred CCCccccCcHHHhccccHHHHHhcCCcc
Confidence 9999999987644333333344444443
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.40 E-value=4.7e-06 Score=86.28 Aligned_cols=103 Identities=22% Similarity=0.237 Sum_probs=80.0
Q ss_pred CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCcc-CCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119 1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSS-LSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL 79 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~s-l~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L 79 (366)
|+.|+.|||++|+...-. ....++.|+.|+|++|.+. .+|.- ...+ +|+.|+|++|.+++ -..+.+|.+|+.|
T Consensus 186 l~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~t---L~gie~LksL~~L 259 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTT---LRGIENLKSLYGL 259 (1096)
T ss_pred HHHhhhhccchhhhhhhH-HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHh---hhhHHhhhhhhcc
Confidence 467899999999955433 4566788999999999997 67652 2233 49999999999873 3568899999999
Q ss_pred EccCCCCCccc--hhhhCCCCccEEEccCCcC
Q 040119 80 HLSGNNFFTLP--ASIYRLSKLSKIFLKDCKM 109 (366)
Q Consensus 80 ~Ls~N~~~~lP--~~i~~L~~L~~L~L~~n~~ 109 (366)
||+.|-+...- .-++.|..|+.|+|.+|++
T Consensus 260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred chhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 99999877332 2466788899999999984
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.19 E-value=0.00058 Score=61.19 Aligned_cols=103 Identities=14% Similarity=0.079 Sum_probs=76.9
Q ss_pred CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEcc
Q 040119 3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLS 82 (366)
Q Consensus 3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls 82 (366)
+...+||++|.+ .....+..+..|.+|.++.|.|...-|.--.-+++|+.|.|.+|+|.+-.--..+..++.|++|.+-
T Consensus 43 ~~d~iDLtdNdl-~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDL-RKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccch-hhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 456788988873 3344556777899999999999855555334577899999999999751112446678899999999
Q ss_pred CCCCCccch----hhhCCCCccEEEccC
Q 040119 83 GNNFFTLPA----SIYRLSKLSKIFLKD 106 (366)
Q Consensus 83 ~N~~~~lP~----~i~~L~~L~~L~L~~ 106 (366)
+|..+..+. -|..+++|+.||+..
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhh
Confidence 999986653 367788888888765
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.18 E-value=0.00013 Score=77.53 Aligned_cols=106 Identities=20% Similarity=0.231 Sum_probs=76.1
Q ss_pred CCccEEEeeCCCCCC---CCCCcCCCCCccEEECcCCCCCC-CCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCC
Q 040119 2 KNLKELSFRGCKGSP---SSASWFLPFPINLMRWSSDPMAL-SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLE 77 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~---~~~~~~~~~~L~~L~ls~n~l~~-~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~ 77 (366)
.+|++|+++|..... +......+|+|+.|.+.+-.+.. .+-.-..++++|..||+|+++++. + ..+++|++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n--l-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN--L-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC--c-HHHhccccHH
Confidence 478899998866221 12234566888888887765532 222334678889999999999863 4 7888999999
Q ss_pred EEEccCCCCCccc--hhhhCCCCccEEEccCCcCc
Q 040119 78 ELHLSGNNFFTLP--ASIYRLSKLSKIFLKDCKML 110 (366)
Q Consensus 78 ~L~Ls~N~~~~lP--~~i~~L~~L~~L~L~~n~~l 110 (366)
.|.+.+=.|..-. ..+.+|++|+.||++.-+..
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 9988887777543 36788999999999876644
No 52
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.12 E-value=0.00026 Score=65.54 Aligned_cols=83 Identities=23% Similarity=0.334 Sum_probs=56.7
Q ss_pred CCccEEECcCCCCCCCCCccCCCCCCCcEEEeecC--CCCCCCCCccCCCCCCCCEEEccCCCCCccc--hhhhCCCCcc
Q 040119 25 FPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYC--DLGEGAIPSGIGNLCSLEELHLSGNNFFTLP--ASIYRLSKLS 100 (366)
Q Consensus 25 ~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n--~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP--~~i~~L~~L~ 100 (366)
..|+.|.+.+..++ .+ ..+..|++|+.|.++.| ++. +.++.....+++|++|+|++|+|+.+- ..+..+.+|.
T Consensus 43 ~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~-~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 43 VELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVS-GGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cchhhhhhhcccee-ec-ccCCCcchhhhhcccCCccccc-ccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 44666665555554 22 23567788899999998 666 556655566688999999999887421 1456777788
Q ss_pred EEEccCCcCc
Q 040119 101 KIFLKDCKML 110 (366)
Q Consensus 101 ~L~L~~n~~l 110 (366)
.|++.+|.-.
T Consensus 120 ~Ldl~n~~~~ 129 (260)
T KOG2739|consen 120 SLDLFNCSVT 129 (260)
T ss_pred hhhcccCCcc
Confidence 8888888744
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.78 E-value=0.00086 Score=71.40 Aligned_cols=109 Identities=17% Similarity=0.073 Sum_probs=81.5
Q ss_pred CCCccEEEeeCCCCCCC--CCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCE
Q 040119 1 MKNLKELSFRGCKGSPS--SASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEE 78 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~--~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~ 78 (366)
||+|+.|.+.|=..... ......+++|..||+|+++++ .+ ..+++|++|+.|.+.+=.+.....-..+.+|++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 68999999988553322 123346688999999999997 55 669999999999988866643222346789999999
Q ss_pred EEccCCCCCccch-------hhhCCCCccEEEccCCcCcc
Q 040119 79 LHLSGNNFFTLPA-------SIYRLSKLSKIFLKDCKMLQ 111 (366)
Q Consensus 79 L~Ls~N~~~~lP~-------~i~~L~~L~~L~L~~n~~l~ 111 (366)
||+|.......+. +-..|++|+.||.++..+.+
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 9999887664442 23458999999999876543
No 54
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.69 E-value=0.0004 Score=66.72 Aligned_cols=86 Identities=23% Similarity=0.328 Sum_probs=42.5
Q ss_pred CCCccEEECcCCCCCC----CCCccCCCCCCCcEEEeecCCCCCCC---CCcc-CCCCCCCCEEEccCCCCC-----ccc
Q 040119 24 PFPINLMRWSSDPMAL----SLPSSLSGLCSLTKLDISYCDLGEGA---IPSG-IGNLCSLEELHLSGNNFF-----TLP 90 (366)
Q Consensus 24 ~~~L~~L~ls~n~l~~----~lP~sl~~L~~L~~L~Ls~n~l~~~~---lP~~-i~~L~sL~~L~Ls~N~~~-----~lP 90 (366)
+++|++|+|..|.++. .+-..+..+++|+.|++++|.+..+- +-.. -...++|+.|.|.+|.|+ .+-
T Consensus 212 ~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la 291 (382)
T KOG1909|consen 212 CPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALA 291 (382)
T ss_pred CCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHH
Confidence 4556666666665542 12233445555666666666554210 0011 112455666666666655 233
Q ss_pred hhhhCCCCccEEEccCCcC
Q 040119 91 ASIYRLSKLSKIFLKDCKM 109 (366)
Q Consensus 91 ~~i~~L~~L~~L~L~~n~~ 109 (366)
.++...+.|..|+|++|.+
T Consensus 292 ~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 292 ACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhcchhhHHhcCCcccc
Confidence 4455555666666666653
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.45 E-value=0.0019 Score=59.94 Aligned_cols=102 Identities=17% Similarity=0.067 Sum_probs=69.0
Q ss_pred CccEEEeeCCCCCCCCCCcCCCCCccEEECcCC--CCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccC---CCCCCCC
Q 040119 3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSD--PMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGI---GNLCSLE 77 (366)
Q Consensus 3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n--~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i---~~L~sL~ 77 (366)
.|+.|++.++. ..+...+..+++|+.|.++.| .+.+.++.....+++|++|+|++|++. ++.++ ..+.+|.
T Consensus 44 ~le~ls~~n~g-ltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~---~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 44 ELELLSVINVG-LTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK---DLSTLRPLKELENLK 119 (260)
T ss_pred chhhhhhhccc-eeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc---cccccchhhhhcchh
Confidence 45555555554 223334456678999999999 666677776777899999999999997 35444 4566777
Q ss_pred EEEccCCCCCccc----hhhhCCCCccEEEccCCc
Q 040119 78 ELHLSGNNFFTLP----ASIYRLSKLSKIFLKDCK 108 (366)
Q Consensus 78 ~L~Ls~N~~~~lP----~~i~~L~~L~~L~L~~n~ 108 (366)
.|++..|..+.+- .-+.-+++|++|+-....
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 8888888766442 123445667666655443
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.0057 Score=58.07 Aligned_cols=59 Identities=19% Similarity=0.150 Sum_probs=29.9
Q ss_pred CCCccEEEeeCCCCCCCCCCc-CCCCCccEEECcCCCCCC-CCCccCCCCCCCcEEEeecC
Q 040119 1 MKNLKELSFRGCKGSPSSASW-FLPFPINLMRWSSDPMAL-SLPSSLSGLCSLTKLDISYC 59 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~~-~~~~~L~~L~ls~n~l~~-~lP~sl~~L~~L~~L~Ls~n 59 (366)
||.|++|+|+.|+...++... ....+|++|-|.+..+.. .+-+.+..++.++.|.++.|
T Consensus 96 lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 96 LPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred CccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 456666666666644443333 223345555555554432 23333455555555555555
No 57
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.25 E-value=0.0024 Score=61.47 Aligned_cols=109 Identities=15% Similarity=0.137 Sum_probs=67.5
Q ss_pred CCccEEEeeCCCCCCCC-CC----cCCCCCccEEECcCCCCCCC-------------CCccCCCCCCCcEEEeecCCCCC
Q 040119 2 KNLKELSFRGCKGSPSS-AS----WFLPFPINLMRWSSDPMALS-------------LPSSLSGLCSLTKLDISYCDLGE 63 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~-~~----~~~~~~L~~L~ls~n~l~~~-------------lP~sl~~L~~L~~L~Ls~n~l~~ 63 (366)
+.|++|+||.|-+.... +. ......|+.|.|.+|.+... .-..+..-+.|+++....|.+-.
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 46778888887632211 11 12245577788887776521 11123445668888888887742
Q ss_pred CC---CCccCCCCCCCCEEEccCCCCC-----ccchhhhCCCCccEEEccCCcCc
Q 040119 64 GA---IPSGIGNLCSLEELHLSGNNFF-----TLPASIYRLSKLSKIFLKDCKML 110 (366)
Q Consensus 64 ~~---lP~~i~~L~sL~~L~Ls~N~~~-----~lP~~i~~L~~L~~L~L~~n~~l 110 (366)
+. +-..|...+.|+.+.+..|.|. -+-..+..+++|+.|||.+|.+.
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 11 1234556677888888888776 23456788888888888888754
No 58
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.01 E-value=0.0024 Score=36.43 Aligned_cols=20 Identities=50% Similarity=0.735 Sum_probs=11.5
Q ss_pred CCEEEccCCCCCccchhhhC
Q 040119 76 LEELHLSGNNFFTLPASIYR 95 (366)
Q Consensus 76 L~~L~Ls~N~~~~lP~~i~~ 95 (366)
|++|+|++|+|+.+|.+|++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 55666666666666655443
No 59
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.0009 Score=63.36 Aligned_cols=109 Identities=26% Similarity=0.322 Sum_probs=50.0
Q ss_pred CCCCCCcEEEeecCCCCCCCCCccCCCC-CCCCEEEccCCC--CC--ccchhhhCCCCccEEEccCCcCccCCCCCCccc
Q 040119 46 SGLCSLTKLDISYCDLGEGAIPSGIGNL-CSLEELHLSGNN--FF--TLPASIYRLSKLSKIFLKDCKMLQNLPRLPASI 120 (366)
Q Consensus 46 ~~L~~L~~L~Ls~n~l~~~~lP~~i~~L-~sL~~L~Ls~N~--~~--~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L 120 (366)
.+++.|..|+|+.|-+....+-..+.+. .+|+.|+|+|.. +. .+..-...+++|..|||++|..+.. .....
T Consensus 257 ~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~--~~~~~- 333 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN--DCFQE- 333 (419)
T ss_pred HhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc--hHHHH-
Confidence 4455555555555555421111111111 245555555541 11 2222334566666666666654421 11111
Q ss_pred ceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCCCCCceEEEEC
Q 040119 121 HGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGSSITIST 169 (366)
Q Consensus 121 ~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~~g~~~~l~L 169 (366)
+...+.|++++++ .| + .-+|+-|-+...+++++++++
T Consensus 334 ----~~kf~~L~~lSls---RC--Y---~i~p~~~~~l~s~psl~yLdv 370 (419)
T KOG2120|consen 334 ----FFKFNYLQHLSLS---RC--Y---DIIPETLLELNSKPSLVYLDV 370 (419)
T ss_pred ----HHhcchheeeehh---hh--c---CCChHHeeeeccCcceEEEEe
Confidence 1133455555554 12 1 135666665554778888863
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.02 E-value=0.0082 Score=57.00 Aligned_cols=81 Identities=21% Similarity=0.297 Sum_probs=46.8
Q ss_pred CccEEECcCCCCCC--CCCccCCCCCCCcEEEeecCCCCCCCCCccC-CCCCCCCEEEccCCCCC--ccchhhhCCCCcc
Q 040119 26 PINLMRWSSDPMAL--SLPSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFF--TLPASIYRLSKLS 100 (366)
Q Consensus 26 ~L~~L~ls~n~l~~--~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i-~~L~sL~~L~Ls~N~~~--~lP~~i~~L~~L~ 100 (366)
.++.++|.+|.++. ++-.-+.+|+.|++|+|+.|.+.. .| ..+ -.+.+|+.|.|.|..+. ..-..+.++++++
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s-~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS-DI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC-cc-ccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 35666676666653 333334566777777777776641 11 111 24456667777666554 4445566666666
Q ss_pred EEEccCCc
Q 040119 101 KIFLKDCK 108 (366)
Q Consensus 101 ~L~L~~n~ 108 (366)
.|.++.|.
T Consensus 150 elHmS~N~ 157 (418)
T KOG2982|consen 150 ELHMSDNS 157 (418)
T ss_pred hhhhccch
Confidence 66666664
No 61
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.0013 Score=62.29 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=69.2
Q ss_pred CCccEEEeeCCCCCCCCCC---cCCCCCccEEECcCCCCCCCCCccC-C-CCCCCcEEEeecCCCC--CCCCCccCCCCC
Q 040119 2 KNLKELSFRGCKGSPSSAS---WFLPFPINLMRWSSDPMALSLPSSL-S-GLCSLTKLDISYCDLG--EGAIPSGIGNLC 74 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~~---~~~~~~L~~L~ls~n~l~~~lP~sl-~-~L~~L~~L~Ls~n~l~--~~~lP~~i~~L~ 74 (366)
.+|+.|+|++|........ +..+..|..|+++.+.+..+.-..+ . --.+|+.|+|+|+.-- ...+..-....+
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp 313 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCP 313 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCC
Confidence 3677888888874433222 2234558888888887654321111 1 1346889999998532 111222234678
Q ss_pred CCCEEEccCCCC-C-ccchhhhCCCCccEEEccCCcCc
Q 040119 75 SLEELHLSGNNF-F-TLPASIYRLSKLSKIFLKDCKML 110 (366)
Q Consensus 75 sL~~L~Ls~N~~-~-~lP~~i~~L~~L~~L~L~~n~~l 110 (366)
+|.+|||+.|.- + ..-..|.++..|++|.|+.|..+
T Consensus 314 ~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 314 NLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred ceeeeccccccccCchHHHHHHhcchheeeehhhhcCC
Confidence 899999998753 3 33456788999999999999843
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.81 E-value=0.11 Score=42.52 Aligned_cols=76 Identities=16% Similarity=0.219 Sum_probs=29.4
Q ss_pred CCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCC-ccCCCCCCCCEEEccCCCCCccch-hhhCCCCccEE
Q 040119 25 FPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIP-SGIGNLCSLEELHLSGNNFFTLPA-SIYRLSKLSKI 102 (366)
Q Consensus 25 ~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP-~~i~~L~sL~~L~Ls~N~~~~lP~-~i~~L~~L~~L 102 (366)
..|+.+.+.. .+...-...|.++.+|+.+.+..+ +. .++ ..|..+.+|+.+.+.. .+..++. .+.++++|+.+
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~--~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT--SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS--CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-cc--ccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 3455555442 233222233455555666665553 32 132 3344554566666643 4444433 33445566665
Q ss_pred Ecc
Q 040119 103 FLK 105 (366)
Q Consensus 103 ~L~ 105 (366)
.+.
T Consensus 87 ~~~ 89 (129)
T PF13306_consen 87 DIP 89 (129)
T ss_dssp EET
T ss_pred ccC
Confidence 554
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.60 E-value=0.01 Score=33.73 Aligned_cols=21 Identities=43% Similarity=0.561 Sum_probs=13.4
Q ss_pred CCcEEEeecCCCCCCCCCccCCC
Q 040119 50 SLTKLDISYCDLGEGAIPSGIGN 72 (366)
Q Consensus 50 ~L~~L~Ls~n~l~~~~lP~~i~~ 72 (366)
+|+.|+|++|++++ +|..|++
T Consensus 1 ~L~~Ldls~n~l~~--ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTS--IPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESE--EGTTTTT
T ss_pred CccEEECCCCcCEe--CChhhcC
Confidence 46677777777753 6666554
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.54 E-value=0.001 Score=62.39 Aligned_cols=62 Identities=19% Similarity=0.217 Sum_probs=38.6
Q ss_pred CCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccc--hhhhCCCCccEEEccCCcCc
Q 040119 46 SGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLP--ASIYRLSKLSKIFLKDCKML 110 (366)
Q Consensus 46 ~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP--~~i~~L~~L~~L~L~~n~~l 110 (366)
..++.|+.|.|+-|+|+. -..+..+++|++|+|..|.|..+- ..+.+|++|+.|+|..|+--
T Consensus 38 ~kMp~lEVLsLSvNkIss---L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISS---LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred HhcccceeEEeecccccc---chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcc
Confidence 456666666666666652 233555666777777777666554 35667777777777666543
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.31 E-value=0.0022 Score=60.25 Aligned_cols=97 Identities=22% Similarity=0.208 Sum_probs=67.2
Q ss_pred CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCC--ccCCCCCCCCEE
Q 040119 2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIP--SGIGNLCSLEEL 79 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP--~~i~~L~sL~~L 79 (366)
.+.++|++-||.+. .+......+.|++|.|+-|.|+ .+-+ +..+++|+.|+|..|.|.+ +- .-+.+|++|+.|
T Consensus 19 ~~vkKLNcwg~~L~-DIsic~kMp~lEVLsLSvNkIs-sL~p-l~rCtrLkElYLRkN~I~s--ldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLD-DISICEKMPLLEVLSLSVNKIS-SLAP-LQRCTRLKELYLRKNCIES--LDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCcc-HHHHHHhcccceeEEeeccccc-cchh-HHHHHHHHHHHHHhccccc--HHHHHHHhcCchhhhH
Confidence 35677888777632 2233345577999999999997 4544 7889999999999998853 43 346788899999
Q ss_pred EccCCCCC-ccc-----hhhhCCCCccEEE
Q 040119 80 HLSGNNFF-TLP-----ASIYRLSKLSKIF 103 (366)
Q Consensus 80 ~Ls~N~~~-~lP-----~~i~~L~~L~~L~ 103 (366)
+|..|.-. .-+ .-+.-|++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99888655 112 1345566666655
No 66
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.15 E-value=0.033 Score=29.62 Aligned_cols=16 Identities=44% Similarity=0.692 Sum_probs=5.4
Q ss_pred CCCEEEccCCCCCccc
Q 040119 75 SLEELHLSGNNFFTLP 90 (366)
Q Consensus 75 sL~~L~Ls~N~~~~lP 90 (366)
+|+.|+|++|+|+++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3444444444444443
No 67
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.71 E-value=0.0012 Score=60.60 Aligned_cols=86 Identities=19% Similarity=0.140 Sum_probs=73.9
Q ss_pred CCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccchhhhCCCCccE
Q 040119 22 FLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSK 101 (366)
Q Consensus 22 ~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~ 101 (366)
......+.|+++.|.+. .+-..++.++.|..|+|+.|.+ ..+|.+++.+..+..+++..|+.+.+|.+.+.++.+++
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~--~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQI--KFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhH--hhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence 34455778999999886 6666788888999999999998 55999999999999999999999999999999999999
Q ss_pred EEccCCcCc
Q 040119 102 IFLKDCKML 110 (366)
Q Consensus 102 L~L~~n~~l 110 (366)
+++..+.+.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 999988754
No 68
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.88 E-value=0.099 Score=30.69 Aligned_cols=21 Identities=43% Similarity=0.596 Sum_probs=14.6
Q ss_pred CCCCCEEEccCCCCCccchhh
Q 040119 73 LCSLEELHLSGNNFFTLPASI 93 (366)
Q Consensus 73 L~sL~~L~Ls~N~~~~lP~~i 93 (366)
|++|+.|+|++|.|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 456777777777777777654
No 69
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.88 E-value=0.099 Score=30.69 Aligned_cols=21 Identities=43% Similarity=0.596 Sum_probs=14.6
Q ss_pred CCCCCEEEccCCCCCccchhh
Q 040119 73 LCSLEELHLSGNNFFTLPASI 93 (366)
Q Consensus 73 L~sL~~L~Ls~N~~~~lP~~i 93 (366)
|++|+.|+|++|.|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 456777777777777777654
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.72 E-value=0.15 Score=27.08 Aligned_cols=14 Identities=36% Similarity=0.354 Sum_probs=8.0
Q ss_pred CCCcEEEeecCCCC
Q 040119 49 CSLTKLDISYCDLG 62 (366)
Q Consensus 49 ~~L~~L~Ls~n~l~ 62 (366)
++|+.|+|++|++.
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 36778888888774
No 71
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=90.36 E-value=0.39 Score=45.37 Aligned_cols=38 Identities=16% Similarity=0.235 Sum_probs=17.2
Q ss_pred CCCccEEECcCCCCCCCCCcc----CCCCCCCcEEEeecCCC
Q 040119 24 PFPINLMRWSSDPMALSLPSS----LSGLCSLTKLDISYCDL 61 (366)
Q Consensus 24 ~~~L~~L~ls~n~l~~~lP~s----l~~L~~L~~L~Ls~n~l 61 (366)
++.|+..+||.|.+....|.. +++-+.|..|.|++|.+
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 344555555555544333332 23334455555555544
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=89.91 E-value=0.044 Score=54.97 Aligned_cols=128 Identities=25% Similarity=0.269 Sum_probs=72.0
Q ss_pred CCccEEEeeCCCCCCC---CCCcCCCCCccEEECcCC-CCCCC----CCccCCCCCCCcEEEeecCC-CCCCCCCccCC-
Q 040119 2 KNLKELSFRGCKGSPS---SASWFLPFPINLMRWSSD-PMALS----LPSSLSGLCSLTKLDISYCD-LGEGAIPSGIG- 71 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~---~~~~~~~~~L~~L~ls~n-~l~~~----lP~sl~~L~~L~~L~Ls~n~-l~~~~lP~~i~- 71 (366)
++|+.|.+.+|..... .+.....+.|+.|+++.+ ..... .......+.+|+.|+|+.+. +++ ..-..+.
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd-~~l~~l~~ 266 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD-IGLSALAS 266 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc-hhHHHHHh
Confidence 5677777777763332 223344566888888762 11111 11234456788888888887 442 1112222
Q ss_pred CCCCCCEEEccCCC-CC--ccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeC
Q 040119 72 NLCSLEELHLSGNN-FF--TLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSD 136 (366)
Q Consensus 72 ~L~sL~~L~Ls~N~-~~--~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~ 136 (366)
.+++|+.|.+.++. ++ .+-.-...++.|+.|+++.|..... ..+..+ +.+|+.|+.+..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d-----~~l~~~-~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD-----SGLEAL-LKNCPNLRELKL 328 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH-----HHHHHH-HHhCcchhhhhh
Confidence 26688888877665 44 3333445677888999888875411 123333 335665555443
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=86.77 E-value=1.7 Score=35.19 Aligned_cols=116 Identities=15% Similarity=0.243 Sum_probs=60.3
Q ss_pred CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCC-ccCCCCCCCCEEE
Q 040119 2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIP-SGIGNLCSLEELH 80 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP-~~i~~L~sL~~L~ 80 (366)
++|+.+.+...-..+....+.....|+.+.+..+ +...-...+.++++|+.+.+.+ .+. .++ ..|..+.+|+.+.
T Consensus 12 ~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~--~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 12 SNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK--SIGDNAFSNCTNLKNID 87 (129)
T ss_dssp TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT---EE-TTTTTT-TTECEEE
T ss_pred CCCCEEEECCCeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc--ccccccccccccccccc
Confidence 4788888875444455556667778999999875 5433334577887899999976 443 244 4566799999999
Q ss_pred ccCCCCCccch-hhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCcc
Q 040119 81 LSGNNFFTLPA-SIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLE 132 (366)
Q Consensus 81 Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~ 132 (366)
+..+ +..++. .+.+. +|+.+.+..+- . . +....+.+|++|+
T Consensus 88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~~~--~---~----i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 88 IPSN-ITEIGSSSFSNC-NLKEINIPSNI--T---K----IEENAFKNCTKLK 129 (129)
T ss_dssp ETTT--BEEHTTTTTT--T--EEE-TTB---S---S--------GGG------
T ss_pred cCcc-ccEEchhhhcCC-CceEEEECCCc--c---E----ECCccccccccCC
Confidence 9875 777764 56665 89988876521 1 2 2233345787764
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.43 E-value=0.021 Score=52.53 Aligned_cols=82 Identities=9% Similarity=0.050 Sum_probs=68.3
Q ss_pred CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEcc
Q 040119 3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLS 82 (366)
Q Consensus 3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls 82 (366)
..+.||++.|+.......+..++.|..|+++.|.+. .+|..+..+..+..+++..|+.+. .|.+++.++.++++++.
T Consensus 43 r~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~--~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ--QPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh--CCccccccCCcchhhhc
Confidence 346788888875444444555566888999999997 899999999999999999999965 99999999999999999
Q ss_pred CCCCC
Q 040119 83 GNNFF 87 (366)
Q Consensus 83 ~N~~~ 87 (366)
+|.|.
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 99876
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=84.23 E-value=0.13 Score=51.55 Aligned_cols=137 Identities=25% Similarity=0.240 Sum_probs=82.0
Q ss_pred CCCccEEEeeCC-CCCCC-----CCCcCCCCCccEEECcCCC-CCCCCCccCC-CCCCCcEEEeecCC-CCCCCCCccCC
Q 040119 1 MKNLKELSFRGC-KGSPS-----SASWFLPFPINLMRWSSDP-MALSLPSSLS-GLCSLTKLDISYCD-LGEGAIPSGIG 71 (366)
Q Consensus 1 L~~L~~L~Ls~n-~~~~~-----~~~~~~~~~L~~L~ls~n~-l~~~lP~sl~-~L~~L~~L~Ls~n~-l~~~~lP~~i~ 71 (366)
++.|+.|++++| ..... .........|+.|+++.+. ++...-..+. .+++|+.|.+.+|. +++..+-....
T Consensus 213 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~ 292 (482)
T KOG1947|consen 213 CPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAE 292 (482)
T ss_pred CchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHH
Confidence 367899999984 21111 1123344668899998887 4432222232 37899999988887 55333334445
Q ss_pred CCCCCCEEEccCCCCC---ccchhhhCCCCccEEEccCCc---CccC-----CCCCC-cccceecccCCcCccEeeCC
Q 040119 72 NLCSLEELHLSGNNFF---TLPASIYRLSKLSKIFLKDCK---MLQN-----LPRLP-ASIHGIFLDGCVSLETLSDG 137 (366)
Q Consensus 72 ~L~sL~~L~Ls~N~~~---~lP~~i~~L~~L~~L~L~~n~---~l~~-----lp~lp-~~L~~L~~~~c~sL~~l~~~ 137 (366)
.+++|+.|+|+++... .+.....++++|+.|.+.... .+.. +.... ..+..+.+.+|+.|+.+.+.
T Consensus 293 ~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~ 370 (482)
T KOG1947|consen 293 RCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLS 370 (482)
T ss_pred hcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhh
Confidence 6788999999988654 244444556666665544333 2211 11223 25666677788888777665
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.20 E-value=0.89 Score=26.48 Aligned_cols=21 Identities=38% Similarity=0.626 Sum_probs=15.8
Q ss_pred CCCCcEEEeecCCCCCCCCCccC
Q 040119 48 LCSLTKLDISYCDLGEGAIPSGI 70 (366)
Q Consensus 48 L~~L~~L~Ls~n~l~~~~lP~~i 70 (366)
|++|+.|+|++|+|.. +|...
T Consensus 1 L~~L~~L~L~~N~l~~--lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSS--LPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCc--CCHHH
Confidence 4678889999998864 77653
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.20 E-value=0.89 Score=26.48 Aligned_cols=21 Identities=38% Similarity=0.626 Sum_probs=15.8
Q ss_pred CCCCcEEEeecCCCCCCCCCccC
Q 040119 48 LCSLTKLDISYCDLGEGAIPSGI 70 (366)
Q Consensus 48 L~~L~~L~Ls~n~l~~~~lP~~i 70 (366)
|++|+.|+|++|+|.. +|...
T Consensus 1 L~~L~~L~L~~N~l~~--lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSS--LPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCc--CCHHH
Confidence 4678889999998864 77653
No 78
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=82.51 E-value=0.75 Score=43.55 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=70.0
Q ss_pred CCCccEEEeeCCCCCCCCC-----CcCCCCCccEEECcCCCCCC---CCC-------ccCCCCCCCcEEEeecCCCCCCC
Q 040119 1 MKNLKELSFRGCKGSPSSA-----SWFLPFPINLMRWSSDPMAL---SLP-------SSLSGLCSLTKLDISYCDLGEGA 65 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~-----~~~~~~~L~~L~ls~n~l~~---~lP-------~sl~~L~~L~~L~Ls~n~l~~~~ 65 (366)
|..++.++||||.+..... ....-.+|+..+++.--... .+| ..+-++++|+..+||+|.+. -.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg-~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG-SE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC-cc
Confidence 3567889999998443211 11223457776666543321 222 34678899999999999996 44
Q ss_pred CCcc----CCCCCCCCEEEccCCCCCccc-----hh---------hhCCCCccEEEccCCcC
Q 040119 66 IPSG----IGNLCSLEELHLSGNNFFTLP-----AS---------IYRLSKLSKIFLKDCKM 109 (366)
Q Consensus 66 lP~~----i~~L~sL~~L~Ls~N~~~~lP-----~~---------i~~L~~L~~L~L~~n~~ 109 (366)
.|+. |.+-+.|.+|.|++|.+-.+. .+ +.+-+.|+......|++
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 5543 566778999999999876332 11 23456788888887774
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.14 E-value=1.2 Score=26.50 Aligned_cols=17 Identities=47% Similarity=0.745 Sum_probs=10.8
Q ss_pred CCCEEEccCCCCCccch
Q 040119 75 SLEELHLSGNNFFTLPA 91 (366)
Q Consensus 75 sL~~L~Ls~N~~~~lP~ 91 (366)
+|+.|++++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45666666666666664
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.52 E-value=2.3 Score=25.26 Aligned_cols=14 Identities=50% Similarity=0.560 Sum_probs=7.9
Q ss_pred CCCCEEEccCCCCC
Q 040119 74 CSLEELHLSGNNFF 87 (366)
Q Consensus 74 ~sL~~L~Ls~N~~~ 87 (366)
++|+.|+|+.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45555666655554
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.10 E-value=0.98 Score=40.84 Aligned_cols=80 Identities=24% Similarity=0.290 Sum_probs=47.5
Q ss_pred ccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCC-CCCCCCEEEccCC-CCCcc-chhhhCCCCccEEE
Q 040119 27 INLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIG-NLCSLEELHLSGN-NFFTL-PASIYRLSKLSKIF 103 (366)
Q Consensus 27 L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~-~L~sL~~L~Ls~N-~~~~l-P~~i~~L~~L~~L~ 103 (366)
++.++-++..|..+--..+.+++.|+.|.+.+|.-.+..--+.++ -.++|+.|+|++| .|+.- -..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 667777777665544455667777777777777543100001111 3457788888876 35532 24667777777777
Q ss_pred ccC
Q 040119 104 LKD 106 (366)
Q Consensus 104 L~~ 106 (366)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 665
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=59.65 E-value=5.4 Score=22.61 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=6.6
Q ss_pred CCCccEEEeeCCC
Q 040119 1 MKNLKELSFRGCK 13 (366)
Q Consensus 1 L~~L~~L~Ls~n~ 13 (366)
+++|++|+|++|+
T Consensus 1 ~~~L~~L~l~~n~ 13 (24)
T PF13516_consen 1 NPNLETLDLSNNQ 13 (24)
T ss_dssp -TT-SEEE-TSSB
T ss_pred CCCCCEEEccCCc
Confidence 3566677776665
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=51.94 E-value=12 Score=22.31 Aligned_cols=14 Identities=50% Similarity=0.465 Sum_probs=8.8
Q ss_pred CCCCEEEccCCCCC
Q 040119 74 CSLEELHLSGNNFF 87 (366)
Q Consensus 74 ~sL~~L~Ls~N~~~ 87 (366)
++|++|+|++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666664
No 84
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=44.30 E-value=15 Score=36.95 Aligned_cols=129 Identities=21% Similarity=0.259 Sum_probs=75.0
Q ss_pred CCccEEEeeCCCCCCCCCC---cCCCCCccEEECcCCCCCCC--CCccCCCCCCCcEEEeecCCCC-CCCCCccCCCCCC
Q 040119 2 KNLKELSFRGCKGSPSSAS---WFLPFPINLMRWSSDPMALS--LPSSLSGLCSLTKLDISYCDLG-EGAIPSGIGNLCS 75 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~~---~~~~~~L~~L~ls~n~l~~~--lP~sl~~L~~L~~L~Ls~n~l~-~~~lP~~i~~L~s 75 (366)
..|+.|+.++|........ .....+|++|.++.++--.. +-.--.+.+.|+.+++..|... ++.+-.--.+.+.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 3577788888764222211 22346688888887762111 0111246778999999888653 1112222235677
Q ss_pred CCEEEccCCCCC------ccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119 76 LEELHLSGNNFF------TLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG 137 (366)
Q Consensus 76 L~~L~Ls~N~~~------~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~ 137 (366)
|+.|.|+.+... .+-..-..+..|..|.|++|+.+. + ..+. ++..|..|+.+.+-
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~---d--~~Le--~l~~c~~Leri~l~ 434 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT---D--ATLE--HLSICRNLERIELI 434 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch---H--HHHH--HHhhCcccceeeee
Confidence 888888876543 223334556778899999988442 1 1223 22378888887654
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=42.08 E-value=15 Score=21.27 Aligned_cols=13 Identities=46% Similarity=0.950 Sum_probs=10.7
Q ss_pred CCCccEEEeeCCC
Q 040119 1 MKNLKELSFRGCK 13 (366)
Q Consensus 1 L~~L~~L~Ls~n~ 13 (366)
+++|+.|+|++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4788889988886
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=34.37 E-value=18 Score=37.54 Aligned_cols=58 Identities=29% Similarity=0.296 Sum_probs=30.8
Q ss_pred CccEEECcCCCCCCCCC---ccCCCCCCCcEEEeecC--CCCCCCCCccCCCC--CCCCEEEccCCCCC
Q 040119 26 PINLMRWSSDPMALSLP---SSLSGLCSLTKLDISYC--DLGEGAIPSGIGNL--CSLEELHLSGNNFF 87 (366)
Q Consensus 26 ~L~~L~ls~n~l~~~lP---~sl~~L~~L~~L~Ls~n--~l~~~~lP~~i~~L--~sL~~L~Ls~N~~~ 87 (366)
.+..+.|++|.+. .+- +--...++|+.|+|++| .+.. -..+.++ .-|++|.|.||.+.
T Consensus 219 ~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~---~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 219 EILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISS---ESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred ceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcc---hhhhhhhcCCCHHHeeecCCccc
Confidence 3555667777664 221 11123456777778777 3321 1122222 23777778888776
No 87
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=30.81 E-value=15 Score=36.89 Aligned_cols=108 Identities=21% Similarity=0.218 Sum_probs=71.3
Q ss_pred CCccEEEeeCCCCCCCCC---CcCCCCCccEEECcCCCCCC--CCCccCCCCCCCcEEEeecCCCCCCC----CCccCCC
Q 040119 2 KNLKELSFRGCKGSPSSA---SWFLPFPINLMRWSSDPMAL--SLPSSLSGLCSLTKLDISYCDLGEGA----IPSGIGN 72 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~---~~~~~~~L~~L~ls~n~l~~--~lP~sl~~L~~L~~L~Ls~n~l~~~~----lP~~i~~ 72 (366)
.+|++|-|++|+...... .....+.|+.+++-...... .+-.--.+.+.|+.|.|+.|.+.... +...-..
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS 399 (483)
T ss_pred CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence 589999999998432221 12233558888877765532 23332356888999999988754111 1233456
Q ss_pred CCCCCEEEccCCCCC--ccchhhhCCCCccEEEccCCcC
Q 040119 73 LCSLEELHLSGNNFF--TLPASIYRLSKLSKIFLKDCKM 109 (366)
Q Consensus 73 L~sL~~L~Ls~N~~~--~lP~~i~~L~~L~~L~L~~n~~ 109 (366)
+..|+.|.|+++... ..-+.+..+.+|+.+++-+|+-
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 778999999988765 3334667778899999988873
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=26.78 E-value=2.5 Score=43.42 Aligned_cols=107 Identities=22% Similarity=0.271 Sum_probs=0.0
Q ss_pred CccEEEeeCCCCCCCCC-----CcCCCCCccEEECcCCCCCC----CCCccCCCC-CCCcEEEeecCCCCCCC----CCc
Q 040119 3 NLKELSFRGCKGSPSSA-----SWFLPFPINLMRWSSDPMAL----SLPSSLSGL-CSLTKLDISYCDLGEGA----IPS 68 (366)
Q Consensus 3 ~L~~L~Ls~n~~~~~~~-----~~~~~~~L~~L~ls~n~l~~----~lP~sl~~L-~~L~~L~Ls~n~l~~~~----lP~ 68 (366)
.|..|.|.+|....... .......|..|+++.|.+.. .+-..+... ..|++|++..|.++ .. +..
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~-~~g~~~l~~ 166 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLT-SEGAAPLAA 166 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccccc-ccchHHHHH
Q ss_pred cCCCCCCCCEEEccCCCCC-----ccchhhhC----CCCccEEEccCCcCc
Q 040119 69 GIGNLCSLEELHLSGNNFF-----TLPASIYR----LSKLSKIFLKDCKML 110 (366)
Q Consensus 69 ~i~~L~sL~~L~Ls~N~~~-----~lP~~i~~----L~~L~~L~L~~n~~l 110 (366)
.+.....|+.|+++.|.+. .++..+.. ..+++.|.+.+|.+.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
No 89
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.69 E-value=38 Score=30.86 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=26.8
Q ss_pred CCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCC-cc-chhhhC-CCCccEEEccCCc
Q 040119 50 SLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFF-TL-PASIYR-LSKLSKIFLKDCK 108 (366)
Q Consensus 50 ~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~-~l-P~~i~~-L~~L~~L~L~~n~ 108 (366)
.++.+|-+++.|. +.=-..+..+++++.|.+.++.-- .- -+.+++ .++|+.|+|++|.
T Consensus 102 ~IeaVDAsds~I~-~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~ 162 (221)
T KOG3864|consen 102 KIEAVDASDSSIM-YEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP 162 (221)
T ss_pred eEEEEecCCchHH-HHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCC
Confidence 4566666666654 222233445555555555444211 00 011222 2466666666665
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.29 E-value=59 Score=40.22 Aligned_cols=31 Identities=45% Similarity=0.647 Sum_probs=26.2
Q ss_pred EeecCCCCCCCCC-ccCCCCCCCCEEEccCCCCC
Q 040119 55 DISYCDLGEGAIP-SGIGNLCSLEELHLSGNNFF 87 (366)
Q Consensus 55 ~Ls~n~l~~~~lP-~~i~~L~sL~~L~Ls~N~~~ 87 (366)
||++|+|.. || ..|..|.+|+.|+|++|.|.
T Consensus 1 DLSnN~Lst--Lp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIST--IEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCc--cChHHhccCCCceEEEeeCCccc
Confidence 588999974 65 46788999999999999887
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=21.50 E-value=35 Score=35.49 Aligned_cols=62 Identities=16% Similarity=0.042 Sum_probs=38.5
Q ss_pred CCccEEEeeCCCCCCCCC---CcCCCCCccEEECcCCCCCCCCCccCCC--CCCCcEEEeecCCCCC
Q 040119 2 KNLKELSFRGCKGSPSSA---SWFLPFPINLMRWSSDPMALSLPSSLSG--LCSLTKLDISYCDLGE 63 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~---~~~~~~~L~~L~ls~n~l~~~lP~sl~~--L~~L~~L~Ls~n~l~~ 63 (366)
+.+..|+|++|++..... .....++|..|+|++|......-.++.+ ...|++|.|.||.+.+
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 456778899998443222 2234467999999999322111122332 3358899999999873
Done!