Query 040119
Match_columns 366
No_of_seqs 374 out of 2879
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 08:02:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040119.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040119hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.7 1.2E-16 4E-21 153.2 14.4 162 1-174 103-289 (328)
2 4fcg_A Uncharacterized protein 99.7 2E-16 6.9E-21 151.6 14.8 167 1-174 126-313 (328)
3 3rgz_A Protein brassinosteroid 99.6 2.4E-15 8.3E-20 159.7 15.0 112 2-114 442-555 (768)
4 1ogq_A PGIP-2, polygalacturona 99.6 4E-16 1.4E-20 148.3 7.6 114 1-115 75-192 (313)
5 4eco_A Uncharacterized protein 99.6 1.6E-15 5.3E-20 158.0 11.3 165 1-174 205-414 (636)
6 3rgz_A Protein brassinosteroid 99.6 6.2E-15 2.1E-19 156.5 14.9 113 1-114 417-531 (768)
7 3m19_A Variable lymphocyte rec 99.6 4.2E-14 1.4E-18 129.8 17.8 154 2-174 35-191 (251)
8 3rfs_A Internalin B, repeat mo 99.6 3.6E-14 1.2E-18 131.9 17.2 154 2-174 63-217 (272)
9 2o6s_A Variable lymphocyte rec 99.6 2.6E-14 8.9E-19 127.2 13.8 109 2-111 28-138 (208)
10 4ecn_A Leucine-rich repeat pro 99.6 6.8E-15 2.3E-19 158.2 11.8 164 1-174 447-656 (876)
11 2o6q_A Variable lymphocyte rec 99.6 1.4E-13 4.9E-18 127.6 18.2 108 2-110 37-146 (270)
12 1p9a_G Platelet glycoprotein I 99.6 7.5E-14 2.6E-18 131.4 16.2 105 2-110 31-137 (290)
13 1ogq_A PGIP-2, polygalacturona 99.5 3.9E-15 1.3E-19 141.5 7.2 163 2-174 50-233 (313)
14 1ozn_A Reticulon 4 receptor; N 99.5 8E-14 2.8E-18 130.0 15.9 110 1-111 55-167 (285)
15 1ozn_A Reticulon 4 receptor; N 99.5 8.1E-14 2.8E-18 129.9 15.3 168 2-174 32-213 (285)
16 3rfs_A Internalin B, repeat mo 99.5 3.9E-14 1.3E-18 131.7 12.7 128 1-137 84-213 (272)
17 3v47_A TOLL-like receptor 5B a 99.5 5E-14 1.7E-18 139.5 13.1 112 1-113 53-170 (455)
18 3e6j_A Variable lymphocyte rec 99.5 2E-13 6.8E-18 123.9 15.7 129 25-174 40-171 (229)
19 2z62_A TOLL-like receptor 4, v 99.5 1.2E-13 4E-18 128.2 14.3 107 3-110 29-137 (276)
20 4ezg_A Putative uncharacterize 99.5 1.3E-13 4.4E-18 122.0 13.6 150 1-174 43-193 (197)
21 1wwl_A Monocyte differentiatio 99.5 4.9E-14 1.7E-18 133.6 11.3 108 1-110 94-214 (312)
22 3m19_A Variable lymphocyte rec 99.5 3.1E-13 1E-17 124.0 15.4 128 1-137 58-187 (251)
23 2z66_A Variable lymphocyte rec 99.5 8.9E-14 3.1E-18 130.9 11.9 107 2-109 78-187 (306)
24 1wwl_A Monocyte differentiatio 99.5 1.1E-13 3.8E-18 131.2 12.4 154 1-174 120-286 (312)
25 2o6q_A Variable lymphocyte rec 99.5 9.4E-13 3.2E-17 122.1 18.1 105 3-111 17-123 (270)
26 3zyi_A Leucine-rich repeat-con 99.5 2.5E-13 8.4E-18 135.2 15.1 112 2-114 75-188 (452)
27 3oja_B Anopheles plasmodium-re 99.5 2.7E-13 9.3E-18 139.8 15.9 109 1-111 74-185 (597)
28 2ell_A Acidic leucine-rich nuc 99.5 7.9E-14 2.7E-18 119.9 9.9 127 2-137 24-155 (168)
29 1xku_A Decorin; proteoglycan, 99.5 6.2E-13 2.1E-17 126.5 15.6 103 2-108 52-156 (330)
30 4ezg_A Putative uncharacterize 99.5 1.6E-13 5.5E-18 121.4 10.6 124 1-137 65-189 (197)
31 3o6n_A APL1; leucine-rich repe 99.5 6.8E-13 2.3E-17 129.1 16.0 109 1-111 68-179 (390)
32 3zyj_A Leucine-rich repeat-con 99.5 5.4E-13 1.9E-17 132.3 15.3 112 2-114 64-177 (440)
33 2je0_A Acidic leucine-rich nuc 99.5 4.2E-14 1.4E-18 119.2 6.1 126 2-136 17-147 (149)
34 2v70_A SLIT-2, SLIT homolog 2 99.5 3.6E-13 1.2E-17 121.6 12.6 150 5-174 14-165 (220)
35 3e6j_A Variable lymphocyte rec 99.5 1.7E-12 5.7E-17 117.8 17.1 127 2-137 40-167 (229)
36 4eco_A Uncharacterized protein 99.5 8.4E-14 2.9E-18 144.9 9.6 142 21-174 202-389 (636)
37 2v9t_B SLIT homolog 2 protein 99.5 5.7E-13 1.9E-17 120.3 13.9 126 2-137 32-160 (220)
38 3zyj_A Leucine-rich repeat-con 99.5 8.4E-13 2.9E-17 130.9 16.3 125 1-127 87-216 (440)
39 2z80_A TOLL-like receptor 2, v 99.5 1.7E-13 5.8E-18 131.8 10.9 154 3-174 53-210 (353)
40 2v9t_B SLIT homolog 2 protein 99.5 1.1E-12 3.9E-17 118.3 15.6 150 5-174 14-164 (220)
41 1p9a_G Platelet glycoprotein I 99.5 9.8E-13 3.4E-17 123.7 15.6 153 1-174 54-207 (290)
42 2id5_A Lingo-1, leucine rich r 99.5 7.4E-13 2.5E-17 132.2 15.5 108 2-110 80-189 (477)
43 3zyi_A Leucine-rich repeat-con 99.5 8.9E-13 3E-17 131.2 15.8 124 1-126 98-226 (452)
44 3oja_B Anopheles plasmodium-re 99.4 9.7E-13 3.3E-17 135.7 16.3 88 1-90 98-187 (597)
45 1h6u_A Internalin H; cell adhe 99.4 9.9E-13 3.4E-17 124.6 15.1 101 2-109 41-141 (308)
46 2z7x_B TOLL-like receptor 1, v 99.4 6.6E-13 2.3E-17 133.9 14.8 124 3-128 303-431 (520)
47 3vq2_A TLR4, TOLL-like recepto 99.4 1.9E-13 6.5E-18 140.3 10.7 155 2-174 376-533 (606)
48 4ecn_A Leucine-rich repeat pro 99.4 5.9E-13 2E-17 143.1 14.9 111 2-117 548-664 (876)
49 2v70_A SLIT-2, SLIT homolog 2 99.4 4.2E-13 1.4E-17 121.1 11.7 127 2-137 32-161 (220)
50 4glp_A Monocyte differentiatio 99.4 1.5E-13 5E-18 130.1 8.6 107 2-109 91-209 (310)
51 2z66_A Variable lymphocyte rec 99.4 2.2E-13 7.7E-18 128.1 9.4 108 1-111 51-164 (306)
52 2z62_A TOLL-like receptor 4, v 99.4 5.8E-13 2E-17 123.5 11.9 133 25-174 28-161 (276)
53 2o6s_A Variable lymphocyte rec 99.4 1.7E-12 5.7E-17 115.5 14.3 110 1-111 51-162 (208)
54 3vq2_A TLR4, TOLL-like recepto 99.4 3.5E-13 1.2E-17 138.3 11.1 156 1-174 398-557 (606)
55 1w8a_A SLIT protein; signaling 99.4 6.5E-13 2.2E-17 117.3 11.2 122 5-137 11-134 (192)
56 3cvr_A Invasion plasmid antige 99.4 3.7E-12 1.3E-16 131.0 17.9 111 3-128 60-170 (571)
57 3o6n_A APL1; leucine-rich repe 99.4 3.1E-12 1.1E-16 124.4 16.4 104 1-108 92-197 (390)
58 2z81_A CD282 antigen, TOLL-lik 99.4 3.7E-13 1.3E-17 136.4 9.9 112 2-114 26-140 (549)
59 1xku_A Decorin; proteoglycan, 99.4 5.4E-12 1.9E-16 120.0 17.4 104 3-111 32-135 (330)
60 3v47_A TOLL-like receptor 5B a 99.4 1.9E-12 6.4E-17 128.1 14.6 128 2-137 30-162 (455)
61 2wfh_A SLIT homolog 2 protein 99.4 1.3E-12 4.4E-17 115.7 11.8 120 5-137 13-134 (193)
62 4b8c_D Glucose-repressible alc 99.4 1.8E-13 6.3E-18 144.6 7.4 110 1-113 223-332 (727)
63 1a9n_A U2A', U2A'; complex (nu 99.4 4.3E-13 1.5E-17 116.5 8.3 127 1-137 18-148 (176)
64 2ft3_A Biglycan; proteoglycan, 99.4 2.8E-12 9.7E-17 122.1 14.7 105 2-110 54-160 (332)
65 4g8a_A TOLL-like receptor 4; l 99.4 9.3E-13 3.2E-17 134.7 11.9 106 3-110 53-161 (635)
66 2z81_A CD282 antigen, TOLL-lik 99.4 5E-13 1.7E-17 135.4 9.8 159 2-174 310-485 (549)
67 2xwt_C Thyrotropin receptor; s 99.4 2.3E-12 8E-17 117.0 13.2 167 2-174 31-217 (239)
68 1dce_A Protein (RAB geranylger 99.4 9.1E-13 3.1E-17 135.5 11.6 123 3-135 442-566 (567)
69 2ell_A Acidic leucine-rich nuc 99.4 6.3E-13 2.2E-17 114.2 8.6 107 1-110 48-160 (168)
70 2z7x_B TOLL-like receptor 1, v 99.4 2.3E-12 7.9E-17 129.9 14.2 135 27-174 304-456 (520)
71 3t6q_A CD180 antigen; protein- 99.4 1.5E-12 5.3E-17 133.5 13.0 164 1-174 324-512 (606)
72 2xwt_C Thyrotropin receptor; s 99.4 1.2E-12 4.2E-17 118.9 10.8 145 23-173 29-190 (239)
73 3t6q_A CD180 antigen; protein- 99.4 3.1E-12 1E-16 131.3 15.1 108 2-110 278-389 (606)
74 4g8a_A TOLL-like receptor 4; l 99.4 3.2E-12 1.1E-16 130.7 15.1 133 25-174 52-185 (635)
75 2z63_A TOLL-like receptor 4, v 99.4 1.6E-12 5.4E-17 132.1 12.7 128 2-137 28-157 (570)
76 2ft3_A Biglycan; proteoglycan, 99.4 3.8E-12 1.3E-16 121.2 14.6 159 1-174 77-253 (332)
77 2z80_A TOLL-like receptor 2, v 99.4 6.7E-13 2.3E-17 127.6 9.4 107 1-109 99-210 (353)
78 3oja_A Leucine-rich immune mol 99.4 4.2E-13 1.4E-17 135.4 8.3 129 25-174 120-249 (487)
79 2o6r_A Variable lymphocyte rec 99.4 3.2E-12 1.1E-16 110.8 12.8 123 4-137 9-132 (177)
80 2xot_A Amphoterin-induced prot 99.4 8.1E-13 2.8E-17 127.9 9.9 107 3-110 40-149 (361)
81 4glp_A Monocyte differentiatio 99.4 5.6E-13 1.9E-17 126.1 8.3 156 1-174 116-284 (310)
82 1ziw_A TOLL-like receptor 3; i 99.4 6.2E-12 2.1E-16 130.9 17.0 109 2-111 73-185 (680)
83 3j0a_A TOLL-like receptor 5; m 99.4 2.3E-12 7.8E-17 138.2 13.9 111 1-112 47-163 (844)
84 2z63_A TOLL-like receptor 4, v 99.4 7E-13 2.4E-17 134.7 9.4 163 1-174 346-530 (570)
85 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 3.7E-12 1.3E-16 130.1 14.7 162 2-174 331-509 (562)
86 1ziw_A TOLL-like receptor 3; i 99.4 2.8E-12 9.5E-17 133.5 13.5 126 2-137 25-153 (680)
87 3bz5_A Internalin-J, INLJ; leu 99.4 1E-11 3.5E-16 124.3 17.1 101 1-111 41-141 (457)
88 1h6u_A Internalin H; cell adhe 99.4 6.5E-12 2.2E-16 119.0 14.8 146 1-174 62-207 (308)
89 1h6t_A Internalin B; cell adhe 99.4 3.5E-12 1.2E-16 119.9 12.7 102 2-110 46-147 (291)
90 1xeu_A Internalin C; cellular 99.4 5.2E-12 1.8E-16 117.1 13.5 145 1-174 40-184 (263)
91 2id5_A Lingo-1, leucine rich r 99.4 3.3E-12 1.1E-16 127.5 13.0 108 2-111 32-142 (477)
92 4b8c_D Glucose-repressible alc 99.4 4.9E-13 1.7E-17 141.4 7.1 110 16-137 215-324 (727)
93 1w8a_A SLIT protein; signaling 99.4 5.6E-12 1.9E-16 111.2 12.7 110 2-112 29-141 (192)
94 1h6t_A Internalin B; cell adhe 99.4 8.4E-12 2.9E-16 117.3 14.6 146 1-174 67-212 (291)
95 3j0a_A TOLL-like receptor 5; m 99.4 4E-12 1.4E-16 136.2 13.7 110 2-112 24-138 (844)
96 3o53_A Protein LRIM1, AGAP0063 99.3 1E-12 3.5E-17 124.8 7.8 155 1-174 79-249 (317)
97 3bz5_A Internalin-J, INLJ; leu 99.3 5.8E-12 2E-16 126.0 13.3 153 1-174 169-351 (457)
98 2xot_A Amphoterin-induced prot 99.3 4E-12 1.4E-16 123.0 11.6 109 1-110 63-176 (361)
99 3g39_A Variable lymphocyte rec 99.3 8E-12 2.7E-16 108.2 12.2 105 4-111 11-116 (170)
100 3g06_A SSPH2 (leucine-rich rep 99.3 2.4E-11 8.4E-16 126.2 18.0 34 2-38 81-114 (622)
101 1jl5_A Outer protein YOPM; leu 99.3 3.3E-11 1.1E-15 120.4 18.2 114 3-128 112-225 (454)
102 3cvr_A Invasion plasmid antige 99.3 3E-11 1E-15 124.3 18.2 147 2-174 80-242 (571)
103 2wfh_A SLIT homolog 2 protein 99.3 1.6E-11 5.4E-16 108.6 14.0 124 28-174 13-138 (193)
104 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 1E-11 3.5E-16 126.8 14.0 102 4-110 33-134 (562)
105 2r9u_A Variable lymphocyte rec 99.3 1.3E-11 4.5E-16 107.4 12.6 102 5-110 15-118 (174)
106 4fmz_A Internalin; leucine ric 99.3 3.3E-11 1.1E-15 115.0 16.1 118 1-125 43-162 (347)
107 3o53_A Protein LRIM1, AGAP0063 99.3 1.4E-12 4.7E-17 123.8 6.1 141 2-159 120-262 (317)
108 3g06_A SSPH2 (leucine-rich rep 99.3 4.2E-11 1.4E-15 124.4 17.7 120 2-137 61-189 (622)
109 2je0_A Acidic leucine-rich nuc 99.3 1.8E-12 6.1E-17 109.1 5.9 105 1-106 41-149 (149)
110 1m9s_A Internalin B; cell inva 99.3 1.5E-11 5E-16 127.5 13.5 101 2-109 43-143 (605)
111 2o6r_A Variable lymphocyte rec 99.3 5.6E-11 1.9E-15 102.9 14.7 111 2-113 28-140 (177)
112 4fmz_A Internalin; leucine ric 99.3 2E-11 6.8E-16 116.5 12.7 103 1-108 131-254 (347)
113 1xeu_A Internalin C; cellular 99.3 2.3E-11 7.7E-16 112.8 12.7 119 1-137 62-180 (263)
114 3oja_A Leucine-rich immune mol 99.3 2.3E-12 8E-17 129.9 6.5 142 1-159 119-262 (487)
115 1jl5_A Outer protein YOPM; leu 99.3 6.6E-11 2.2E-15 118.3 16.9 94 26-128 174-267 (454)
116 1m9s_A Internalin B; cell inva 99.3 2.2E-11 7.5E-16 126.1 13.4 146 1-174 64-209 (605)
117 2ast_B S-phase kinase-associat 99.2 2.9E-12 9.9E-17 121.7 4.6 126 2-128 70-205 (336)
118 1a9n_A U2A', U2A'; complex (nu 99.2 6.7E-12 2.3E-16 108.9 5.9 104 2-109 42-152 (176)
119 1o6v_A Internalin A; bacterial 99.2 1.3E-10 4.3E-15 116.0 15.4 103 1-110 198-300 (466)
120 1o6v_A Internalin A; bacterial 99.2 8.3E-11 2.8E-15 117.3 13.5 105 1-112 220-324 (466)
121 2r9u_A Variable lymphocyte rec 99.1 3.5E-10 1.2E-14 98.3 12.0 98 27-137 14-113 (174)
122 1dce_A Protein (RAB geranylger 99.1 1.2E-10 4.2E-15 119.7 10.4 100 26-137 442-541 (567)
123 4ay9_X Follicle-stimulating ho 99.1 4.4E-10 1.5E-14 108.0 13.1 104 3-107 31-138 (350)
124 3g39_A Variable lymphocyte rec 99.1 5.5E-10 1.9E-14 96.5 12.0 98 27-137 11-110 (170)
125 2ifg_A High affinity nerve gro 99.1 2.5E-10 8.5E-15 109.2 10.4 103 6-110 12-116 (347)
126 2ca6_A RAN GTPase-activating p 99.1 7.9E-12 2.7E-16 121.5 -2.5 109 1-110 31-172 (386)
127 1ds9_A Outer arm dynein; leuci 99.0 1.3E-12 4.3E-17 115.7 -7.9 82 23-109 46-127 (198)
128 2ast_B S-phase kinase-associat 99.0 1.2E-11 4E-16 117.4 -1.8 107 1-108 92-206 (336)
129 2ca6_A RAN GTPase-activating p 99.0 8.5E-12 2.9E-16 121.3 -4.2 109 1-110 59-200 (386)
130 3goz_A Leucine-rich repeat-con 98.9 5.7E-11 1.9E-15 114.7 -0.9 165 2-174 22-237 (362)
131 1ds9_A Outer arm dynein; leuci 98.9 5.3E-12 1.8E-16 111.6 -8.2 106 1-111 47-154 (198)
132 2ifg_A High affinity nerve gro 98.9 6.6E-09 2.3E-13 99.2 10.6 81 28-111 11-94 (347)
133 4ay9_X Follicle-stimulating ho 98.9 5E-09 1.7E-13 100.6 9.4 57 50-108 155-213 (350)
134 3goz_A Leucine-rich repeat-con 98.9 4.1E-10 1.4E-14 108.7 1.8 162 6-174 2-208 (362)
135 1z7x_W Ribonuclease inhibitor; 98.7 4.7E-10 1.6E-14 110.9 -4.2 36 73-108 255-295 (461)
136 1z7x_W Ribonuclease inhibitor; 98.6 3.3E-09 1.1E-13 104.8 -1.3 108 2-110 256-383 (461)
137 3sb4_A Hypothetical leucine ri 98.6 3.3E-07 1.1E-11 87.0 11.5 60 1-61 48-136 (329)
138 3ogk_B Coronatine-insensitive 98.5 1E-08 3.4E-13 104.5 -1.7 107 1-108 111-231 (592)
139 3ogk_B Coronatine-insensitive 98.3 1.5E-07 5E-12 95.9 2.6 109 1-109 163-305 (592)
140 2p1m_B Transport inhibitor res 98.3 3E-08 1E-12 100.9 -2.8 85 24-108 104-195 (594)
141 3un9_A NLR family member X1; l 98.3 1.3E-08 4.6E-13 99.0 -5.5 159 2-174 72-251 (372)
142 3un9_A NLR family member X1; l 98.3 5.1E-08 1.7E-12 94.9 -2.5 131 2-137 101-247 (372)
143 3sb4_A Hypothetical leucine ri 98.1 5.1E-06 1.7E-10 78.7 8.8 101 24-136 225-328 (329)
144 3rw6_A Nuclear RNA export fact 98.1 1.3E-06 4.6E-11 81.1 2.6 89 46-137 167-259 (267)
145 1io0_A Tropomodulin; LRR prote 98.0 5E-07 1.7E-11 79.0 -0.5 84 25-108 36-134 (185)
146 3rw6_A Nuclear RNA export fact 98.0 4.3E-06 1.5E-10 77.7 4.5 77 24-103 169-257 (267)
147 2p1m_B Transport inhibitor res 97.9 2.7E-06 9.3E-11 86.3 0.9 107 1-110 371-494 (594)
148 4fdw_A Leucine rich hypothetic 97.8 0.00015 5E-09 71.0 12.2 101 3-108 158-282 (401)
149 2ra8_A Uncharacterized protein 97.7 1.3E-05 4.3E-10 77.7 2.2 157 1-174 138-319 (362)
150 4fdw_A Leucine rich hypothetic 97.6 0.00046 1.6E-08 67.5 12.5 123 1-137 179-331 (401)
151 3e4g_A ATP synthase subunit S, 97.5 4.2E-05 1.4E-09 66.5 2.5 81 26-108 62-150 (176)
152 2ra8_A Uncharacterized protein 97.4 2E-05 6.7E-10 76.4 0.0 129 1-137 171-315 (362)
153 1io0_A Tropomodulin; LRR prote 97.3 6.5E-05 2.2E-09 65.3 2.2 107 2-108 36-162 (185)
154 3e4g_A ATP synthase subunit S, 97.2 0.00031 1E-08 61.0 5.1 70 40-110 52-127 (176)
155 4h09_A Hypothetical leucine ri 96.9 0.0064 2.2E-07 58.0 11.3 59 44-105 258-318 (379)
156 3rfe_A Platelet glycoprotein I 96.7 0.003 1E-07 51.7 6.8 34 75-108 32-66 (130)
157 4h09_A Hypothetical leucine ri 96.5 0.0083 2.8E-07 57.3 9.5 99 3-105 241-341 (379)
158 4gt6_A Cell surface protein; l 96.3 0.017 5.7E-07 55.7 10.2 104 20-137 260-365 (394)
159 4fs7_A Uncharacterized protein 96.1 0.023 7.9E-07 54.7 9.8 97 3-105 231-328 (394)
160 4fs7_A Uncharacterized protein 96.0 0.036 1.2E-06 53.2 10.9 76 25-106 230-306 (394)
161 3rfe_A Platelet glycoprotein I 95.6 0.022 7.5E-07 46.4 6.3 56 28-87 11-68 (130)
162 4gt6_A Cell surface protein; l 94.7 0.15 5.3E-06 48.8 10.4 84 42-137 258-342 (394)
163 1pgv_A TMD-1, tropomodulin TMD 94.4 0.0099 3.4E-07 52.4 1.0 84 25-108 41-137 (197)
164 1pgv_A TMD-1, tropomodulin TMD 94.1 0.014 4.9E-07 51.3 1.4 64 46-109 38-110 (197)
165 3ukw_C Bimax1 peptide; arm rep 85.3 0.2 6.7E-06 28.2 0.3 13 352-364 15-27 (28)
166 3ukx_C Bimax2 peptide; arm rep 32.3 16 0.00053 20.5 0.9 13 352-364 15-27 (28)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.70 E-value=1.2e-16 Score=153.23 Aligned_cols=162 Identities=18% Similarity=0.254 Sum_probs=107.2
Q ss_pred CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCC--------
Q 040119 1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGN-------- 72 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~-------- 72 (366)
|++|++|+|++|.+.........+.+|+.|++++|.+. .+|..+..+++|+.|+|++|++. +.+|..++.
T Consensus 103 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~-~~~p~~~~~~~~~~~~~ 180 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPEL-TELPEPLASTDASGEHQ 180 (328)
T ss_dssp GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTC-CCCCSCSEEEC-CCCEE
T ss_pred CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCc-cccChhHhhccchhhhc
Confidence 46788888888886633333455677888888888887 78888888888888888888777 777776654
Q ss_pred -CCCCCEEEccCCCCCccchhhhCCCCccEEEccCCcCccCCCC-C--CcccceecccCCc-------------CccEee
Q 040119 73 -LCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPR-L--PASIHGIFLDGCV-------------SLETLS 135 (366)
Q Consensus 73 -L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~-l--p~~L~~L~~~~c~-------------sL~~l~ 135 (366)
+++|+.|+|++|.++.+|..+.++++|+.|+|++|++.+ +|. + .++|+.|++++|. +|+.|+
T Consensus 181 ~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp ESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred cCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 777888888777777777777777777777777777553 332 1 1245555554432 333333
Q ss_pred CCCCCCcccccCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119 136 DGYWRDCSIVVPGSEIPEWFEYQNNEGSSITISTPPKTY 174 (366)
Q Consensus 136 ~~~f~~~~~~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~ 174 (366)
++ .+.+. ..+|.+|.... ++..++|..|.+
T Consensus 260 L~-----~n~~~-~~~p~~~~~l~---~L~~L~L~~n~~ 289 (328)
T 4fcg_A 260 LK-----DCSNL-LTLPLDIHRLT---QLEKLDLRGCVN 289 (328)
T ss_dssp CT-----TCTTC-CBCCTTGGGCT---TCCEEECTTCTT
T ss_pred CC-----CCCch-hhcchhhhcCC---CCCEEeCCCCCc
Confidence 32 11222 24666666555 666677776655
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.69 E-value=2e-16 Score=151.57 Aligned_cols=167 Identities=23% Similarity=0.347 Sum_probs=98.1
Q ss_pred CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCC---------CCCCcEEEeecCCCCCCCCCccCC
Q 040119 1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSG---------LCSLTKLDISYCDLGEGAIPSGIG 71 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~---------L~~L~~L~Ls~n~l~~~~lP~~i~ 71 (366)
|++|++|+|++|.+.........+++|+.|++++|.+.+.+|..+.. +++|+.|+|++|.+.. +|..++
T Consensus 126 l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--lp~~l~ 203 (328)
T 4fcg_A 126 FAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS--LPASIA 203 (328)
T ss_dssp GTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC--CCGGGG
T ss_pred cCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc--chHhhc
Confidence 35667777777765422223444556777777776666666665543 6677777777776643 666677
Q ss_pred CCCCCCEEEccCCCCCccchhhhCCCCccEEEccCCcCccCCCCC---CcccceecccCCcCccEeeCCCCCCc------
Q 040119 72 NLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRL---PASIHGIFLDGCVSLETLSDGYWRDC------ 142 (366)
Q Consensus 72 ~L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~l---p~~L~~L~~~~c~sL~~l~~~~f~~~------ 142 (366)
.+++|+.|+|++|.++.+|..+..+++|+.|+|++|++.+.+|.. .++|+.|++++|..+..++.. |.++
T Consensus 204 ~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L 282 (328)
T 4fcg_A 204 NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKL 282 (328)
T ss_dssp GCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT-GGGCTTCCEE
T ss_pred CCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh-hhcCCCCCEE
Confidence 777777777777777766666777777777777777666666543 235566665554333333221 1110
Q ss_pred ---ccccCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119 143 ---SIVVPGSEIPEWFEYQNNEGSSITISTPPKTY 174 (366)
Q Consensus 143 ---~~~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~ 174 (366)
.+.+.| .+|++|.... ++..++++.+.+
T Consensus 283 ~L~~n~~~~-~iP~~l~~L~---~L~~l~l~~~~~ 313 (328)
T 4fcg_A 283 DLRGCVNLS-RLPSLIAQLP---ANCIILVPPHLQ 313 (328)
T ss_dssp ECTTCTTCC-CCCGGGGGSC---TTCEEECCGGGS
T ss_pred eCCCCCchh-hccHHHhhcc---CceEEeCCHHHH
Confidence 222222 4677766666 556666665554
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.62 E-value=2.4e-15 Score=159.65 Aligned_cols=112 Identities=23% Similarity=0.267 Sum_probs=79.0
Q ss_pred CCccEEEeeCCCCCCCCC-CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 2 KNLKELSFRGCKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
++|+.|+|++|......+ .+..+++|+.|++++|.+.+.+|..+.++++|+.|+|++|++. +.+|..++.+++|+.|+
T Consensus 442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~ 520 (768)
T 3rgz_A 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT-GEIPKWIGRLENLAILK 520 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEE
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC-CcCChHHhcCCCCCEEE
Confidence 456666666666443322 2334566777777777777777777777777777777777777 67777777777777777
Q ss_pred ccCCCCC-ccchhhhCCCCccEEEccCCcCccCCC
Q 040119 81 LSGNNFF-TLPASIYRLSKLSKIFLKDCKMLQNLP 114 (366)
Q Consensus 81 Ls~N~~~-~lP~~i~~L~~L~~L~L~~n~~l~~lp 114 (366)
|++|.++ .+|..+.++++|+.|++++|++.+.+|
T Consensus 521 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred CCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 7777777 677777777777777777777776666
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.62 E-value=4e-16 Score=148.32 Aligned_cols=114 Identities=20% Similarity=0.307 Sum_probs=91.2
Q ss_pred CCCccEEEeeC-CCCCCCCC-CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCE
Q 040119 1 MKNLKELSFRG-CKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEE 78 (366)
Q Consensus 1 L~~L~~L~Ls~-n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~ 78 (366)
|++|++|+|++ |......+ .+..+++|++|++++|.+.+.+|..+..+++|++|+|++|.+. +.+|..++.+++|++
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS-GTLPPSISSLPNLVG 153 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE-SCCCGGGGGCTTCCE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC-CcCChHHhcCCCCCe
Confidence 57888999985 66443333 3456677888888888888788888888888888888888887 678888888888888
Q ss_pred EEccCCCCC-ccchhhhCCC-CccEEEccCCcCccCCCC
Q 040119 79 LHLSGNNFF-TLPASIYRLS-KLSKIFLKDCKMLQNLPR 115 (366)
Q Consensus 79 L~Ls~N~~~-~lP~~i~~L~-~L~~L~L~~n~~l~~lp~ 115 (366)
|+|++|.++ .+|..+..++ +|+.|++++|++.+.+|.
T Consensus 154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~ 192 (313)
T 1ogq_A 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192 (313)
T ss_dssp EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG
T ss_pred EECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh
Confidence 888888888 7888888887 888888888887765553
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.61 E-value=1.6e-15 Score=157.96 Aligned_cols=165 Identities=15% Similarity=0.168 Sum_probs=133.8
Q ss_pred CCCccEEEeeCCCCCCC-----------------CCC-cC--CCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCC
Q 040119 1 MKNLKELSFRGCKGSPS-----------------SAS-WF--LPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCD 60 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~-----------------~~~-~~--~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~ 60 (366)
|++|++|+|++|.+... .|. .. .+.+|+.|++++|.+.+.+|..+.++++|+.|+|++|+
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 57999999999997662 333 33 57889999999999999999999999999999999998
Q ss_pred -CCCC-CCCccCCCC------CCCCEEEccCCCCCccch--hhhCCCCccEEEccCCcCccCCCCC--CcccceecccCC
Q 040119 61 -LGEG-AIPSGIGNL------CSLEELHLSGNNFFTLPA--SIYRLSKLSKIFLKDCKMLQNLPRL--PASIHGIFLDGC 128 (366)
Q Consensus 61 -l~~~-~lP~~i~~L------~sL~~L~Ls~N~~~~lP~--~i~~L~~L~~L~L~~n~~l~~lp~l--p~~L~~L~~~~c 128 (366)
++ | .+|..++.+ ++|+.|+|++|+++.+|. .++++++|+.|++++|++.+.+|.+ .+.|+.|+++++
T Consensus 285 ~l~-~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 285 GIS-GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN 363 (636)
T ss_dssp TSC-HHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSS
T ss_pred CCc-cccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCC
Confidence 87 7 799998887 999999999999999998 9999999999999999988788844 245666666543
Q ss_pred ------------cC-ccEeeCCCCCCcccccCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119 129 ------------VS-LETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGSSITISTPPKTY 174 (366)
Q Consensus 129 ------------~s-L~~l~~~~f~~~~~~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~ 174 (366)
++ |+.|+++ .+.+. .+|.+|.... ..++..++++.|.+
T Consensus 364 ~l~~lp~~l~~l~~~L~~L~Ls-----~N~l~--~lp~~~~~~~-l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 364 QITEIPANFCGFTEQVENLSFA-----HNKLK--YIPNIFDAKS-VSVMSAIDFSYNEI 414 (636)
T ss_dssp EEEECCTTSEEECTTCCEEECC-----SSCCS--SCCSCCCTTC-SSCEEEEECCSSCT
T ss_pred ccccccHhhhhhcccCcEEEcc-----CCcCc--ccchhhhhcc-cCccCEEECcCCcC
Confidence 44 6666665 33333 5787776655 55678888887777
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.60 E-value=6.2e-15 Score=156.53 Aligned_cols=113 Identities=25% Similarity=0.274 Sum_probs=76.5
Q ss_pred CCCccEEEeeCCCCCCCC-CCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119 1 MKNLKELSFRGCKGSPSS-ASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL 79 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~-~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L 79 (366)
+++|+.|+|++|...... ..+..+++|+.|++++|.+.+.+|..+..+++|+.|+|++|.+. +.+|..++.+++|+.|
T Consensus 417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L 495 (768)
T 3rgz_A 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT-GEIPSGLSNCTNLNWI 495 (768)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEE
T ss_pred CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCccc-CcCCHHHhcCCCCCEE
Confidence 356666666666643222 22344556777777777777677777777777777777777776 6677777777777777
Q ss_pred EccCCCCC-ccchhhhCCCCccEEEccCCcCccCCC
Q 040119 80 HLSGNNFF-TLPASIYRLSKLSKIFLKDCKMLQNLP 114 (366)
Q Consensus 80 ~Ls~N~~~-~lP~~i~~L~~L~~L~L~~n~~l~~lp 114 (366)
+|++|.++ .+|.+++.+++|+.|+|++|++.+.+|
T Consensus 496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 531 (768)
T 3rgz_A 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred EccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC
Confidence 77777776 667777777777777777777666555
No 7
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.59 E-value=4.2e-14 Score=129.80 Aligned_cols=154 Identities=18% Similarity=0.224 Sum_probs=100.7
Q ss_pred CCccEEEeeCCCCCCCCC-CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 2 KNLKELSFRGCKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
++|+.|+|++|.+....+ .+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+. +..|..|..+++|+.|+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEE
Confidence 357777777777443332 3455667777777777777666666777777777777777776 44445667777777777
Q ss_pred ccCCCCCccchh-hhCCCCccEEEccCCcCccCCCCCCc-ccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccC
Q 040119 81 LSGNNFFTLPAS-IYRLSKLSKIFLKDCKMLQNLPRLPA-SIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQ 158 (366)
Q Consensus 81 Ls~N~~~~lP~~-i~~L~~L~~L~L~~n~~l~~lp~lp~-~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~ 158 (366)
|++|.|+.+|.. +..+++|+.|+|++|++.+ +|+ .+. ++++|+.|+++ .+.+.+ ..|..|...
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~-----~l~~L~~L~L~-----~N~l~~-~~~~~~~~l 178 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS----IPAGAFD-----KLTNLQTLSLS-----TNQLQS-VPHGAFDRL 178 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC----CCTTTTT-----TCTTCCEEECC-----SSCCSC-CCTTTTTTC
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCCcCCc----cCHHHcC-----cCcCCCEEECC-----CCcCCc-cCHHHHhCC
Confidence 777777777654 5677777777777776442 222 232 56677777776 333432 123355554
Q ss_pred CCCCceEEEECCCCCC
Q 040119 159 NNEGSSITISTPPKTY 174 (366)
Q Consensus 159 ~~~g~~~~l~L~~n~~ 174 (366)
. ++..++|..|.+
T Consensus 179 ~---~L~~L~l~~N~~ 191 (251)
T 3m19_A 179 G---KLQTITLFGNQF 191 (251)
T ss_dssp T---TCCEEECCSCCB
T ss_pred C---CCCEEEeeCCce
Confidence 4 677888888877
No 8
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.59 E-value=3.6e-14 Score=131.92 Aligned_cols=154 Identities=17% Similarity=0.160 Sum_probs=74.8
Q ss_pred CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEc
Q 040119 2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHL 81 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~L 81 (366)
++|+.|+|++|..... +....+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+. +..|..++.+++|+.|+|
T Consensus 63 ~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp TTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEEEC
Confidence 4455555555543321 22333444555555555554333333445555555555555554 233333455555555555
Q ss_pred cCCCCCccchh-hhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCCC
Q 040119 82 SGNNFFTLPAS-IYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNN 160 (366)
Q Consensus 82 s~N~~~~lP~~-i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~ 160 (366)
++|.++.+|.. +..+++|+.|++++|++.+ +|+.. +.++++|+.|+++ .+.+.+ ..|.+|....
T Consensus 141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~----~~~l~~L~~L~L~-----~N~l~~-~~~~~~~~l~- 205 (272)
T 3rfs_A 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQS----LPEGV----FDKLTQLKDLRLY-----QNQLKS-VPDGVFDRLT- 205 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCC----CCTTT----TTTCTTCCEEECC-----SSCCSC-CCTTTTTTCT-
T ss_pred CCCccCccCHHHhccCccCCEEECCCCCcCc----cCHHH----hcCCccCCEEECC-----CCcCCc-cCHHHHhCCc-
Confidence 55555544432 3455555555555554332 11111 1245566666655 333332 2344565555
Q ss_pred CCceEEEECCCCCC
Q 040119 161 EGSSITISTPPKTY 174 (366)
Q Consensus 161 ~g~~~~l~L~~n~~ 174 (366)
++..++|..|.+
T Consensus 206 --~L~~L~l~~N~~ 217 (272)
T 3rfs_A 206 --SLQYIWLHDNPW 217 (272)
T ss_dssp --TCCEEECCSSCB
T ss_pred --CCCEEEccCCCc
Confidence 677888888876
No 9
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.57 E-value=2.6e-14 Score=127.24 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=90.2
Q ss_pred CCccEEEeeCCCCCCCCC-CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 2 KNLKELSFRGCKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
++|+.|+|++|.+....+ .+..+.+|+.|++++|.+....+..+..+++|++|+|++|.+. +..+..++.+++|+.|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEE
Confidence 579999999998554333 3456788999999999998554555789999999999999997 44445679999999999
Q ss_pred ccCCCCCccchh-hhCCCCccEEEccCCcCcc
Q 040119 81 LSGNNFFTLPAS-IYRLSKLSKIFLKDCKMLQ 111 (366)
Q Consensus 81 Ls~N~~~~lP~~-i~~L~~L~~L~L~~n~~l~ 111 (366)
|++|.|+.+|.. +.++++|+.|++++|++.+
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS 138 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccce
Confidence 999999988764 7899999999999998664
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=6.8e-15 Score=158.19 Aligned_cols=164 Identities=16% Similarity=0.147 Sum_probs=126.8
Q ss_pred CCCccEEEeeCCCCCC-----------------CCCCcC---CCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCC
Q 040119 1 MKNLKELSFRGCKGSP-----------------SSASWF---LPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCD 60 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~-----------------~~~~~~---~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~ 60 (366)
|++|+.|+|++|.+.. +.|... .+++|+.|++++|.+.+.+|..+.+|++|+.|+|++|+
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 5789999999999665 133332 57889999999999999999999999999999999998
Q ss_pred -CCCC-CCCccCCCCC-------CCCEEEccCCCCCccch--hhhCCCCccEEEccCCcCccCCCCC--CcccceecccC
Q 040119 61 -LGEG-AIPSGIGNLC-------SLEELHLSGNNFFTLPA--SIYRLSKLSKIFLKDCKMLQNLPRL--PASIHGIFLDG 127 (366)
Q Consensus 61 -l~~~-~lP~~i~~L~-------sL~~L~Ls~N~~~~lP~--~i~~L~~L~~L~L~~n~~l~~lp~l--p~~L~~L~~~~ 127 (366)
++ | .+|..++.++ +|+.|+|++|.++.+|. .+.++++|+.|+|++|++. .+|.+ .+.|+.|++++
T Consensus 527 ~ls-g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 527 GIS-AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDY 604 (876)
T ss_dssp TSC-HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCS
T ss_pred Ccc-cccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcC
Confidence 76 7 7887666555 99999999999999998 8999999999999999976 67744 23566666544
Q ss_pred C------------cC-ccEeeCCCCCCcccccCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119 128 C------------VS-LETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGSSITISTPPKTY 174 (366)
Q Consensus 128 c------------~s-L~~l~~~~f~~~~~~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~ 174 (366)
+ ++ |+.|+++ .+.+. .+|.+|.... ..++..++|+.|.+
T Consensus 605 N~l~~lp~~l~~l~~~L~~L~Ls-----~N~L~--~lp~~~~~~~-~~~L~~L~Ls~N~l 656 (876)
T 4ecn_A 605 NQIEEIPEDFCAFTDQVEGLGFS-----HNKLK--YIPNIFNAKS-VYVMGSVDFSYNKI 656 (876)
T ss_dssp SCCSCCCTTSCEECTTCCEEECC-----SSCCC--SCCSCCCTTC-SSCEEEEECCSSCT
T ss_pred CccccchHHHhhccccCCEEECc-----CCCCC--cCchhhhccc-cCCCCEEECcCCcC
Confidence 3 33 5555554 23333 5777776665 44577788877776
No 11
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.55 E-value=1.4e-13 Score=127.60 Aligned_cols=108 Identities=19% Similarity=0.199 Sum_probs=80.6
Q ss_pred CCccEEEeeCCCCCCCC-CCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 2 KNLKELSFRGCKGSPSS-ASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~-~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
++|++|+|++|.+.... ..+..+++|+.|++++|.+....+..+..+++|+.|+|++|.+. +..+..+..+++|+.|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEE
Confidence 36888899888854333 34566778888888888887333344577888888888888886 33345678888888888
Q ss_pred ccCCCCCccch-hhhCCCCccEEEccCCcCc
Q 040119 81 LSGNNFFTLPA-SIYRLSKLSKIFLKDCKML 110 (366)
Q Consensus 81 Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~~l 110 (366)
|++|.++.+|. .+..+++|+.|+|++|++.
T Consensus 116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCccCeeCHHHhCcCcCCCEEECCCCcCC
Confidence 88888887764 5678888888888888754
No 12
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.55 E-value=7.5e-14 Score=131.42 Aligned_cols=105 Identities=21% Similarity=0.194 Sum_probs=57.9
Q ss_pred CCccEEEeeCCCCCCC-CCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 2 KNLKELSFRGCKGSPS-SASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~-~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
++|+.|+|++|.+... ...+..++.|+.|++++|.+. .+|. ...+++|+.|+|++|.+.. +|..+..+++|+.|+
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLD 106 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEEE
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccC-CCCCCcCCEEECCCCcCCc--CchhhccCCCCCEEE
Confidence 3566666666664322 122344455666666666655 3333 2555666666666666632 555555666666666
Q ss_pred ccCCCCCccc-hhhhCCCCccEEEccCCcCc
Q 040119 81 LSGNNFFTLP-ASIYRLSKLSKIFLKDCKML 110 (366)
Q Consensus 81 Ls~N~~~~lP-~~i~~L~~L~~L~L~~n~~l 110 (366)
|++|.|+.+| ..+.++++|+.|+|++|++.
T Consensus 107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 107 VSFNRLTSLPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred CCCCcCcccCHHHHcCCCCCCEEECCCCCCC
Confidence 6666666554 34555666666666666533
No 13
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.55 E-value=3.9e-15 Score=141.48 Aligned_cols=163 Identities=18% Similarity=0.252 Sum_probs=128.8
Q ss_pred CCccEEEeeCCCCCC---CCCCcCCCCCccEEECcC-CCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCC
Q 040119 2 KNLKELSFRGCKGSP---SSASWFLPFPINLMRWSS-DPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLE 77 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~---~~~~~~~~~~L~~L~ls~-n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~ 77 (366)
.+++.|+|++|.... ....+..++.|+.|++++ |.+.+.+|..+.++++|++|+|++|.+. +.+|..|+.+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS-GAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE-EECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC-CcCCHHHhCCCCCC
Confidence 478999999999764 233455678899999995 9998899999999999999999999998 78999999999999
Q ss_pred EEEccCCCCC-ccchhhhCCCCccEEEccCCcCccCCCC----CCcccceecccCCc------------CccEeeCCCCC
Q 040119 78 ELHLSGNNFF-TLPASIYRLSKLSKIFLKDCKMLQNLPR----LPASIHGIFLDGCV------------SLETLSDGYWR 140 (366)
Q Consensus 78 ~L~Ls~N~~~-~lP~~i~~L~~L~~L~L~~n~~l~~lp~----lp~~L~~L~~~~c~------------sL~~l~~~~f~ 140 (366)
+|+|++|.++ .+|..+..+++|++|+|++|++.+.+|. +++.|+.|+++++. .|+.|+++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls--- 205 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS--- 205 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECC---
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECc---
Confidence 9999999999 8899999999999999999998866663 33466666665441 14444444
Q ss_pred CcccccCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119 141 DCSIVVPGSEIPEWFEYQNNEGSSITISTPPKTY 174 (366)
Q Consensus 141 ~~~~~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~ 174 (366)
.+.+.+ .+|.+|.... ++..++|..|.+
T Consensus 206 --~N~l~~-~~~~~~~~l~---~L~~L~L~~N~l 233 (313)
T 1ogq_A 206 --RNMLEG-DASVLFGSDK---NTQKIHLAKNSL 233 (313)
T ss_dssp --SSEEEE-CCGGGCCTTS---CCSEEECCSSEE
T ss_pred --CCcccC-cCCHHHhcCC---CCCEEECCCCce
Confidence 233332 3667776655 677788887776
No 14
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.55 E-value=8e-14 Score=129.96 Aligned_cols=110 Identities=22% Similarity=0.303 Sum_probs=87.6
Q ss_pred CCCccEEEeeCCCCCCC-CCCcCCCCCccEEECcCCC-CCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCE
Q 040119 1 MKNLKELSFRGCKGSPS-SASWFLPFPINLMRWSSDP-MALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEE 78 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~-~~~~~~~~~L~~L~ls~n~-l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~ 78 (366)
+++|++|+|++|.+... ...+..+++|+.|++++|. +....|..+..+++|+.|+|++|.+. +..|..+..+++|++
T Consensus 55 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~ 133 (285)
T 1ozn_A 55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQY 133 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCE
T ss_pred CCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCC-EECHhHhhCCcCCCE
Confidence 46889999999875443 3345566789999999997 66444777888999999999999987 556778888999999
Q ss_pred EEccCCCCCccch-hhhCCCCccEEEccCCcCcc
Q 040119 79 LHLSGNNFFTLPA-SIYRLSKLSKIFLKDCKMLQ 111 (366)
Q Consensus 79 L~Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~~l~ 111 (366)
|+|++|.++.+|. .+.++++|+.|+|++|++..
T Consensus 134 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred EECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence 9999999987775 47888999999999987553
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.54 E-value=8.1e-14 Score=129.94 Aligned_cols=168 Identities=19% Similarity=0.261 Sum_probs=119.7
Q ss_pred CCccEEEeeCCCCCCCC-CCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCC-CCCCCCCccCCCCCCCCEE
Q 040119 2 KNLKELSFRGCKGSPSS-ASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCD-LGEGAIPSGIGNLCSLEEL 79 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~-~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~-l~~~~lP~~i~~L~sL~~L 79 (366)
++|++|+|++|.+.... ..+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|. +. ...|..+..+++|++|
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCEE
Confidence 57999999999855433 345667889999999999987778889999999999999998 65 4447889999999999
Q ss_pred EccCCCCCcc-chhhhCCCCccEEEccCCcCccCCCC-C--CcccceecccCCcCccEeeCCCCCCc----ccccCCC--
Q 040119 80 HLSGNNFFTL-PASIYRLSKLSKIFLKDCKMLQNLPR-L--PASIHGIFLDGCVSLETLSDGYWRDC----SIVVPGS-- 149 (366)
Q Consensus 80 ~Ls~N~~~~l-P~~i~~L~~L~~L~L~~n~~l~~lp~-l--p~~L~~L~~~~c~sL~~l~~~~f~~~----~~~l~g~-- 149 (366)
+|++|.++.+ |..+.++++|+.|++++|++.+..+. + .++|+.|+++++ .++.+....|.++ .+.+.+.
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCcc
Confidence 9999999977 56789999999999999996643322 1 235555555443 2222222112221 1112221
Q ss_pred --CCCcccccCCCCCceEEEECCCCCC
Q 040119 150 --EIPEWFEYQNNEGSSITISTPPKTY 174 (366)
Q Consensus 150 --~iP~~f~~~~~~g~~~~l~L~~n~~ 174 (366)
..|.+|.... ++..++++.|.+
T Consensus 190 ~~~~~~~~~~l~---~L~~L~l~~n~l 213 (285)
T 1ozn_A 190 AHVHPHAFRDLG---RLMTLYLFANNL 213 (285)
T ss_dssp CEECTTTTTTCT---TCCEEECCSSCC
T ss_pred cccCHhHccCcc---cccEeeCCCCcC
Confidence 2366666555 677777777766
No 16
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.54 E-value=3.9e-14 Score=131.65 Aligned_cols=128 Identities=18% Similarity=0.158 Sum_probs=102.1
Q ss_pred CCCccEEEeeCCCCCCCCC-CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119 1 MKNLKELSFRGCKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL 79 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L 79 (366)
+++|++|+|++|......+ .+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+. +..|..++.+++|+.|
T Consensus 84 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 162 (272)
T 3rfs_A 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTEL 162 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEE
Confidence 5789999999998654333 3566788999999999999666666899999999999999997 5555667999999999
Q ss_pred EccCCCCCccch-hhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119 80 HLSGNNFFTLPA-SIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG 137 (366)
Q Consensus 80 ~Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~ 137 (366)
+|++|+++.+|. .+..+++|+.|++++|++.+..|.. +. ++++|+.+++.
T Consensus 163 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~-----~l~~L~~L~l~ 213 (272)
T 3rfs_A 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV---FD-----RLTSLQYIWLH 213 (272)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT---TT-----TCTTCCEEECC
T ss_pred ECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHH---Hh-----CCcCCCEEEcc
Confidence 999999998875 4689999999999999976533321 22 45555555554
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.52 E-value=5e-14 Score=139.45 Aligned_cols=112 Identities=22% Similarity=0.301 Sum_probs=67.1
Q ss_pred CCCccEEEeeCCCCC--CCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCcc--CCCCCCC
Q 040119 1 MKNLKELSFRGCKGS--PSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSG--IGNLCSL 76 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~--~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~--i~~L~sL 76 (366)
|++|++|+|++|... .+...+..+++|+.|++++|.+.+..|..+.++++|++|+|++|.+. +.+|.. ++.+++|
T Consensus 53 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~l~~L 131 (455)
T 3v47_A 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD-GAVLSGNFFKPLTSL 131 (455)
T ss_dssp CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCB-THHHHSSTTTTCTTC
T ss_pred CccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCC-ccccCcccccCcccC
Confidence 345666666666532 22233445556666666666666555666666666666666666665 434433 6666667
Q ss_pred CEEEccCCCCCcc-chh-hhCCCCccEEEccCCcCccCC
Q 040119 77 EELHLSGNNFFTL-PAS-IYRLSKLSKIFLKDCKMLQNL 113 (366)
Q Consensus 77 ~~L~Ls~N~~~~l-P~~-i~~L~~L~~L~L~~n~~l~~l 113 (366)
++|+|++|.++.+ |.. +.++++|+.|++++|++.+..
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp CEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred CEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence 7777777766654 433 666677777777776655433
No 18
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.52 E-value=2e-13 Score=123.93 Aligned_cols=129 Identities=22% Similarity=0.303 Sum_probs=77.6
Q ss_pred CCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCC-ccCCCCCCCCEEEccCCCCCccchh-hhCCCCccEE
Q 040119 25 FPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIP-SGIGNLCSLEELHLSGNNFFTLPAS-IYRLSKLSKI 102 (366)
Q Consensus 25 ~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP-~~i~~L~sL~~L~Ls~N~~~~lP~~-i~~L~~L~~L 102 (366)
.+|+.|++++|.+.+..|..+..+++|+.|+|++|.+.. +| ..|..+++|+.|+|++|.|+.+|.. +..+++|+.|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~--i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA--LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC--cChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeE
Confidence 556777777777765556666667777777777777642 44 4456677777777777777766543 4666777777
Q ss_pred EccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCC-cccccCCCCCceEEEECCCCCC
Q 040119 103 FLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIP-EWFEYQNNEGSSITISTPPKTY 174 (366)
Q Consensus 103 ~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP-~~f~~~~~~g~~~~l~L~~n~~ 174 (366)
+|++|++. .+|..+. ++++|+.|+++ .+.+. .+| ..|.... ++..++|..|.+
T Consensus 118 ~Ls~N~l~----~lp~~~~-----~l~~L~~L~L~-----~N~l~--~~~~~~~~~l~---~L~~L~l~~N~~ 171 (229)
T 3e6j_A 118 FMCCNKLT----ELPRGIE-----RLTHLTHLALD-----QNQLK--SIPHGAFDRLS---SLTHAYLFGNPW 171 (229)
T ss_dssp ECCSSCCC----SCCTTGG-----GCTTCSEEECC-----SSCCC--CCCTTTTTTCT---TCCEEECTTSCB
T ss_pred eccCCccc----ccCcccc-----cCCCCCEEECC-----CCcCC--ccCHHHHhCCC---CCCEEEeeCCCc
Confidence 77777633 3344443 55666666665 33333 233 3344444 566666666665
No 19
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.52 E-value=1.2e-13 Score=128.22 Aligned_cols=107 Identities=16% Similarity=0.126 Sum_probs=61.8
Q ss_pred CccEEEeeCCCCCCCCC-CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEc
Q 040119 3 NLKELSFRGCKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHL 81 (366)
Q Consensus 3 ~L~~L~Ls~n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~L 81 (366)
+|++|+|++|......+ .+..+++|+.|++++|.+....+..+..+++|+.|+|++|.+. +..|..+..+++|+.|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEEEC
Confidence 46666666666432222 3444555666666666665444445666666666666666665 333455666666666666
Q ss_pred cCCCCCccch-hhhCCCCccEEEccCCcCc
Q 040119 82 SGNNFFTLPA-SIYRLSKLSKIFLKDCKML 110 (366)
Q Consensus 82 s~N~~~~lP~-~i~~L~~L~~L~L~~n~~l 110 (366)
++|++..++. .+.++++|+.|++++|++.
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 137 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQ 137 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccc
Confidence 6666665543 4556666666666666543
No 20
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.52 E-value=1.3e-13 Score=121.99 Aligned_cols=150 Identities=17% Similarity=0.107 Sum_probs=118.6
Q ss_pred CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
|++|+.|+|++|.+.. .+....+++|+.|++++|.+. .+ +.+..+++|+.|+|++|.+. +..|..++.+++|+.|+
T Consensus 43 l~~L~~L~l~~n~i~~-l~~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVTD-LTGIEYAHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVT-SDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCSC-CTTGGGCTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCB-GGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCccC-hHHHhcCCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccC-cccChhhcCCCCCCEEE
Confidence 3589999999998663 235666788999999999775 44 46999999999999999998 66799999999999999
Q ss_pred ccCCCCCc-cchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCC
Q 040119 81 LSGNNFFT-LPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQN 159 (366)
Q Consensus 81 Ls~N~~~~-lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~ 159 (366)
|++|.++. .|..+..+++|+.|++++|+..+.+| .+. ++++|+.|+++ .+.+.+ +| .+....
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~----~l~-----~l~~L~~L~l~-----~n~i~~--~~-~l~~l~ 181 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM----PLK-----TLPELKSLNIQ-----FDGVHD--YR-GIEDFP 181 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG----GGG-----GCSSCCEEECT-----TBCCCC--CT-TGGGCS
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH----hhc-----CCCCCCEEECC-----CCCCcC--hH-HhccCC
Confidence 99999994 78889999999999999998555443 233 78889999887 333432 44 455444
Q ss_pred CCCceEEEECCCCCC
Q 040119 160 NEGSSITISTPPKTY 174 (366)
Q Consensus 160 ~~g~~~~l~L~~n~~ 174 (366)
++..+++..|.+
T Consensus 182 ---~L~~L~l~~N~i 193 (197)
T 4ezg_A 182 ---KLNQLYAFSQTI 193 (197)
T ss_dssp ---SCCEEEECBC--
T ss_pred ---CCCEEEeeCccc
Confidence 788888888876
No 21
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.51 E-value=4.9e-14 Score=133.61 Aligned_cols=108 Identities=18% Similarity=0.169 Sum_probs=83.8
Q ss_pred CCCccEEEeeCCCCCCCCCCc---CCCCCccEEECcCCCCCCCCCccCCCC-----CCCcEEEeecCCCCCCCCCccCCC
Q 040119 1 MKNLKELSFRGCKGSPSSASW---FLPFPINLMRWSSDPMALSLPSSLSGL-----CSLTKLDISYCDLGEGAIPSGIGN 72 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~~---~~~~~L~~L~ls~n~l~~~lP~sl~~L-----~~L~~L~Ls~n~l~~~~lP~~i~~ 72 (366)
+++|++|+|++|......+.. ..+++|+.|++++|.+.+. |..+..+ ++|++|+|++|.+. +..|..|+.
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~-~~~~~~~~~ 171 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVRV 171 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCC-CCCTTTCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCc-cchHHHhcc
Confidence 468899999999865433332 5567799999999998855 7777766 88999999999987 555688888
Q ss_pred CCCCCEEEccCCCCCc---cchhh--hCCCCccEEEccCCcCc
Q 040119 73 LCSLEELHLSGNNFFT---LPASI--YRLSKLSKIFLKDCKML 110 (366)
Q Consensus 73 L~sL~~L~Ls~N~~~~---lP~~i--~~L~~L~~L~L~~n~~l 110 (366)
+++|+.|+|++|.+.. +|..+ ..+++|+.|+|++|++.
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc
Confidence 9999999999988763 35555 78888888888888854
No 22
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.50 E-value=3.1e-13 Score=124.01 Aligned_cols=128 Identities=18% Similarity=0.153 Sum_probs=104.9
Q ss_pred CCCccEEEeeCCCCCCCCC-CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119 1 MKNLKELSFRGCKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL 79 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L 79 (366)
+++|++|+|++|.+....+ .+..+++|+.|++++|.+....|..+..+++|+.|+|++|.+. +..+..+..+++|+.|
T Consensus 58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L 136 (251)
T 3m19_A 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKEL 136 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEE
Confidence 5789999999999655433 3566788999999999999666677899999999999999997 4444557999999999
Q ss_pred EccCCCCCccch-hhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119 80 HLSGNNFFTLPA-SIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG 137 (366)
Q Consensus 80 ~Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~ 137 (366)
+|++|+|+.+|. .+..+++|+.|+|++|++.+..+ ..+. ++++|+.+++.
T Consensus 137 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~-----~l~~L~~L~l~ 187 (251)
T 3m19_A 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH---GAFD-----RLGKLQTITLF 187 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---TTTT-----TCTTCCEEECC
T ss_pred ECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH---HHHh-----CCCCCCEEEee
Confidence 999999998886 68999999999999999653222 1333 67788888877
No 23
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.50 E-value=8.9e-14 Score=130.85 Aligned_cols=107 Identities=24% Similarity=0.264 Sum_probs=48.1
Q ss_pred CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCC-ccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLP-SSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP-~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
++|++|+|++|........+..+++|+.|++++|.+....+ ..+..+++|+.|+|++|.+. +..|..+..+++|+.|+
T Consensus 78 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLK 156 (306)
T ss_dssp SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE-ECSTTTTTTCTTCCEEE
T ss_pred cccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC-ccchhhcccCcCCCEEE
Confidence 45555555555432211122333445555555554442211 23444445555555555444 33444444444455555
Q ss_pred ccCCCCCc--cchhhhCCCCccEEEccCCcC
Q 040119 81 LSGNNFFT--LPASIYRLSKLSKIFLKDCKM 109 (366)
Q Consensus 81 Ls~N~~~~--lP~~i~~L~~L~~L~L~~n~~ 109 (366)
|++|.+.. +|..+..+++|+.|++++|++
T Consensus 157 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 55444442 344444444455555544443
No 24
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.50 E-value=1.1e-13 Score=131.16 Aligned_cols=154 Identities=13% Similarity=0.026 Sum_probs=113.1
Q ss_pred CCCccEEEeeCCCCCCCCCCcCCC-----CCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCC--CCccC--C
Q 040119 1 MKNLKELSFRGCKGSPSSASWFLP-----FPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGA--IPSGI--G 71 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~~~~~-----~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~--lP~~i--~ 71 (366)
+++|++|+|++|.+.........+ ++|+.|++++|.+.+..|..+..+++|+.|+|++|++. +. +|..+ +
T Consensus 120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~~ 198 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL-GERGLISALCPL 198 (312)
T ss_dssp SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC-HHHHHHHHSCTT
T ss_pred CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC-cchHHHHHHHhc
Confidence 578999999999966542222222 78999999999999777789999999999999999986 54 34455 8
Q ss_pred CCCCCCEEEccCCCCCccc---h-hhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccC
Q 040119 72 NLCSLEELHLSGNNFFTLP---A-SIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVP 147 (366)
Q Consensus 72 ~L~sL~~L~Ls~N~~~~lP---~-~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~ 147 (366)
.+++|++|+|++|.|+.+| . .+.++++|+.|+|++|++.+..|. ..+. .+++|+.|+++ .+.+.
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~-----~l~~L~~L~Ls-----~N~l~ 266 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA--PSCD-----WPSQLNSLNLS-----FTGLK 266 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC--SCCC-----CCTTCCEEECT-----TSCCS
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch--hhhh-----hcCCCCEEECC-----CCccC
Confidence 9999999999999999554 3 346889999999999997764421 1111 34566666665 33333
Q ss_pred CCCCCcccccCCCCCceEEEECCCCCC
Q 040119 148 GSEIPEWFEYQNNEGSSITISTPPKTY 174 (366)
Q Consensus 148 g~~iP~~f~~~~~~g~~~~l~L~~n~~ 174 (366)
.||.++. . ++..++|+.|.+
T Consensus 267 --~ip~~~~--~---~L~~L~Ls~N~l 286 (312)
T 1wwl_A 267 --QVPKGLP--A---KLSVLDLSYNRL 286 (312)
T ss_dssp --SCCSSCC--S---EEEEEECCSSCC
T ss_pred --hhhhhcc--C---CceEEECCCCCC
Confidence 4666654 3 566777777766
No 25
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.49 E-value=9.4e-13 Score=122.06 Aligned_cols=105 Identities=19% Similarity=0.232 Sum_probs=76.1
Q ss_pred CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCc-cCCCCCCCCEEEc
Q 040119 3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPS-GIGNLCSLEELHL 81 (366)
Q Consensus 3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~-~i~~L~sL~~L~L 81 (366)
+++.++++++..... +. .....++.|++++|.+....+..+.++++|+.|+|++|.+.. +|. .|..+++|++|+|
T Consensus 17 ~~~~l~~~~~~l~~i-p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAI-PS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT--LPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSC-CS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC--CCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCcc-CC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe--eChhhhcCCCCCCEEEC
Confidence 466788887774432 21 122568888888888875445578888888888888888863 554 4577888888888
Q ss_pred cCCCCCccch-hhhCCCCccEEEccCCcCcc
Q 040119 82 SGNNFFTLPA-SIYRLSKLSKIFLKDCKMLQ 111 (366)
Q Consensus 82 s~N~~~~lP~-~i~~L~~L~~L~L~~n~~l~ 111 (366)
++|.++.+|. .+..+++|+.|+|++|++.+
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 123 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKS 123 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCe
Confidence 8888887764 45778888888888888554
No 26
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.49 E-value=2.5e-13 Score=135.20 Aligned_cols=112 Identities=18% Similarity=0.220 Sum_probs=85.5
Q ss_pred CCccEEEeeCCCCCCC-CCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 2 KNLKELSFRGCKGSPS-SASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~-~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
++|+.|+|++|.+... ...+..+++|+.|++++|.+.+..|..|.++++|+.|+|++|.+. +..+..|..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEE
Confidence 4688889988885433 344566778888999988888767778888888999999988886 33345588888888888
Q ss_pred ccCCCCCccch-hhhCCCCccEEEccCCcCccCCC
Q 040119 81 LSGNNFFTLPA-SIYRLSKLSKIFLKDCKMLQNLP 114 (366)
Q Consensus 81 Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~~l~~lp 114 (366)
|++|.|+.+|. .+.++++|+.|++++|+.++.+|
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 188 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence 88888887764 67777788888887766665554
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.49 E-value=2.7e-13 Score=139.81 Aligned_cols=109 Identities=17% Similarity=0.248 Sum_probs=84.6
Q ss_pred CCCccEEEeeCCCCCCCCC-CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCcc-CCCCCCCCE
Q 040119 1 MKNLKELSFRGCKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSG-IGNLCSLEE 78 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~-i~~L~sL~~ 78 (366)
|++|+.|+|++|.+....+ .+..+.+|+.|++++|.+.+..|..|.++++|+.|+|++|.+.. +|.. |+.+++|++
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~ 151 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTT 151 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC--CCHHHhccCCCCCE
Confidence 4678888888888554333 55667778888888888886666677888888888888888863 5554 588888888
Q ss_pred EEccCCCCCccc-hhhhCCCCccEEEccCCcCcc
Q 040119 79 LHLSGNNFFTLP-ASIYRLSKLSKIFLKDCKMLQ 111 (366)
Q Consensus 79 L~Ls~N~~~~lP-~~i~~L~~L~~L~L~~n~~l~ 111 (366)
|+|++|.++.+| ..+.++++|+.|+|++|.+.+
T Consensus 152 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred EEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 888888888664 468888888888888887654
No 28
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.49 E-value=7.9e-14 Score=119.92 Aligned_cols=127 Identities=20% Similarity=0.240 Sum_probs=89.0
Q ss_pred CCccEEEeeCCCCC--CCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119 2 KNLKELSFRGCKGS--PSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL 79 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~--~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L 79 (366)
++|+.|+|++|... ........+++|+.|++++|.+.. + ..+..+++|+.|+|++|.+. +.+|..+..+++|+.|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELSENRIF-GGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEESCCCC-SCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECcCCcCc-hHHHHHHhhCCCCCEE
Confidence 56888888888755 222223455678888888888874 3 56788888888888888887 5577777778888888
Q ss_pred EccCCCCCccc--hhhhCCCCccEEEccCCcCccCCCCCC-cccceecccCCcCccEeeCC
Q 040119 80 HLSGNNFFTLP--ASIYRLSKLSKIFLKDCKMLQNLPRLP-ASIHGIFLDGCVSLETLSDG 137 (366)
Q Consensus 80 ~Ls~N~~~~lP--~~i~~L~~L~~L~L~~n~~l~~lp~lp-~~L~~L~~~~c~sL~~l~~~ 137 (366)
+|++|.++.+| ..+..+++|+.|++++|++.+ +|... ..+ ..+++|+.+++.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~-----~~l~~L~~L~l~ 155 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVF-----KLLPQLTYLDGY 155 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHH-----TTCSSCCEETTE
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHH-----HhCccCcEecCC
Confidence 88888888776 678888888888888887543 22200 022 256666666654
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.47 E-value=6.2e-13 Score=126.50 Aligned_cols=103 Identities=16% Similarity=0.181 Sum_probs=66.3
Q ss_pred CCccEEEeeCCCCCCCCC-CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 2 KNLKELSFRGCKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
++|+.|+|++|.+....+ .+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+.+ +|..+. ++|+.|+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LPEKMP--KTLQELR 127 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc--cChhhc--ccccEEE
Confidence 467888888887544333 45566778888888888876667788888888888888888753 665543 4555555
Q ss_pred ccCCCCCccch-hhhCCCCccEEEccCCc
Q 040119 81 LSGNNFFTLPA-SIYRLSKLSKIFLKDCK 108 (366)
Q Consensus 81 Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~ 108 (366)
+++|.++.+|. .+.++++|+.|++++|+
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 156 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNP 156 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSC
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCc
Confidence 55555554432 34444444444444443
No 30
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.47 E-value=1.6e-13 Score=121.39 Aligned_cols=124 Identities=21% Similarity=0.192 Sum_probs=105.3
Q ss_pred CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
+++|++|+|++|..... +....+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+. +..|..++.+++|+.|+
T Consensus 65 l~~L~~L~l~~n~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~-~~~~~~l~~l~~L~~L~ 142 (197)
T 4ezg_A 65 AHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD-DSILTKINTLPKVNSID 142 (197)
T ss_dssp CTTCSEEEEESCCCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCB-GGGHHHHTTCSSCCEEE
T ss_pred CCCCCEEEccCCCCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccC-cHhHHHHhhCCCCCEEE
Confidence 57899999999964433 35566788999999999998778888999999999999999998 66789999999999999
Q ss_pred ccCCC-CCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119 81 LSGNN-FFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG 137 (366)
Q Consensus 81 Ls~N~-~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~ 137 (366)
|++|. ++.+| .+..+++|+.|++++|++.. ++ .+. ++++|+.|++.
T Consensus 143 L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~----~l~-----~l~~L~~L~l~ 189 (197)
T 4ezg_A 143 LSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR----GIE-----DFPKLNQLYAF 189 (197)
T ss_dssp CCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT----TGG-----GCSSCCEEEEC
T ss_pred ccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH----Hhc-----cCCCCCEEEee
Confidence 99998 88888 79999999999999998543 22 233 67788888765
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.47 E-value=6.8e-13 Score=129.15 Aligned_cols=109 Identities=17% Similarity=0.242 Sum_probs=81.3
Q ss_pred CCCccEEEeeCCCCCCC-CCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCcc-CCCCCCCCE
Q 040119 1 MKNLKELSFRGCKGSPS-SASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSG-IGNLCSLEE 78 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~-~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~-i~~L~sL~~ 78 (366)
+++|++|+|++|..... ...+..+.+|+.|++++|.+.+..|..+.++++|+.|+|++|.+.. +|.. ++.+++|++
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~ 145 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTT 145 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc--CCHHHhcCCCCCcE
Confidence 46788888888874433 2345566778888888888876666667888888888888888863 6655 578888888
Q ss_pred EEccCCCCCccc-hhhhCCCCccEEEccCCcCcc
Q 040119 79 LHLSGNNFFTLP-ASIYRLSKLSKIFLKDCKMLQ 111 (366)
Q Consensus 79 L~Ls~N~~~~lP-~~i~~L~~L~~L~L~~n~~l~ 111 (366)
|+|++|.++.++ ..+.++++|+.|++++|++..
T Consensus 146 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp EECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred EECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 888888888664 457888888888888887553
No 32
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.47 E-value=5.4e-13 Score=132.26 Aligned_cols=112 Identities=19% Similarity=0.232 Sum_probs=82.0
Q ss_pred CCccEEEeeCCCCCC-CCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 2 KNLKELSFRGCKGSP-SSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~-~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
++|+.|+|++|.+.. +...+..+.+|+.|++++|.+....|..|.++++|+.|+|++|++. +..+..|..+++|+.|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-eeCHhHhhccccCceee
Confidence 467888888887443 3344566677888888888887666677888888888888888886 33334688888888888
Q ss_pred ccCCCCCccch-hhhCCCCccEEEccCCcCccCCC
Q 040119 81 LSGNNFFTLPA-SIYRLSKLSKIFLKDCKMLQNLP 114 (366)
Q Consensus 81 Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~~l~~lp 114 (366)
|++|.|+.+|. .+.++++|+.|+|++|+.++.++
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 177 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS 177 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence 88888887764 56777777777777766555544
No 33
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.46 E-value=4.2e-14 Score=119.24 Aligned_cols=126 Identities=19% Similarity=0.219 Sum_probs=94.0
Q ss_pred CCccEEEeeCCCCC--CCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119 2 KNLKELSFRGCKGS--PSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL 79 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~--~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L 79 (366)
++|+.|++++|... ........+++|+.|++++|.+.. + ..+..+++|+.|+|++|.+. +.+|..++.+++|+.|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I-ANLPKLNKLKKLELSDNRVS-GGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C-TTCCCCTTCCEEECCSSCCC-SCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c-hhhhcCCCCCEEECCCCccc-chHHHHhhhCCCCCEE
Confidence 56889999998865 222334566789999999998874 4 56888999999999999997 6678777788899999
Q ss_pred EccCCCCCccc--hhhhCCCCccEEEccCCcCccCCCCCC-cccceecccCCcCccEeeC
Q 040119 80 HLSGNNFFTLP--ASIYRLSKLSKIFLKDCKMLQNLPRLP-ASIHGIFLDGCVSLETLSD 136 (366)
Q Consensus 80 ~Ls~N~~~~lP--~~i~~L~~L~~L~L~~n~~l~~lp~lp-~~L~~L~~~~c~sL~~l~~ 136 (366)
+|++|.++.+| ..+..+++|+.|++++|++.+ +|..+ ..+. .+++|+.+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~-----~l~~L~~L~l 147 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN-LNDYRENVFK-----LLPQLTYLDG 147 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG-STTHHHHHHH-----HCTTCCEETT
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc-hHHHHHHHHH-----HCCCcccccC
Confidence 99999998765 788889999999999998553 33211 1222 5666666654
No 34
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.46 E-value=3.6e-13 Score=121.58 Aligned_cols=150 Identities=15% Similarity=0.145 Sum_probs=111.5
Q ss_pred cEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCC-ccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccC
Q 040119 5 KELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLP-SSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSG 83 (366)
Q Consensus 5 ~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP-~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~ 83 (366)
+.|++++|..... |. .....++.|++++|.+.+..| ..+..+++|+.|+|++|.+. +..|..|..+++|+.|+|++
T Consensus 14 ~~l~~s~n~l~~i-P~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKI-PE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSC-CS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccC-cc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECCC
Confidence 5788888874432 21 223457899999999985544 34788999999999999997 45556899999999999999
Q ss_pred CCCCccch-hhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCCCCC
Q 040119 84 NNFFTLPA-SIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNNEG 162 (366)
Q Consensus 84 N~~~~lP~-~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~~g 162 (366)
|.|+.+|. .+.++++|+.|+|++|++.+..| ..+. ++++|+.|+++ .+.+.+ -.|..|....
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~-----~l~~L~~L~L~-----~N~l~~-~~~~~~~~l~--- 153 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGN---DSFI-----GLSSVRLLSLY-----DNQITT-VAPGAFDTLH--- 153 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT---TSST-----TCTTCSEEECT-----TSCCCC-BCTTTTTTCT---
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECH---hHcC-----CCccCCEEECC-----CCcCCE-ECHHHhcCCC---
Confidence 99997765 58889999999999998664322 2333 67788888887 445543 2477777666
Q ss_pred ceEEEECCCCCC
Q 040119 163 SSITISTPPKTY 174 (366)
Q Consensus 163 ~~~~l~L~~n~~ 174 (366)
++..++|..|.+
T Consensus 154 ~L~~L~L~~N~l 165 (220)
T 2v70_A 154 SLSTLNLLANPF 165 (220)
T ss_dssp TCCEEECCSCCE
T ss_pred CCCEEEecCcCC
Confidence 788899988877
No 35
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.46 E-value=1.7e-12 Score=117.83 Aligned_cols=127 Identities=19% Similarity=0.195 Sum_probs=104.1
Q ss_pred CCccEEEeeCCCCCCC-CCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 2 KNLKELSFRGCKGSPS-SASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~-~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
++|+.|+|++|.+... ...+..+.+|+.|++++|.+....+..+..+++|+.|+|++|.++ +..+..|..+++|+.|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEe
Confidence 5799999999996654 334566788999999999997444455789999999999999997 44455679999999999
Q ss_pred ccCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119 81 LSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG 137 (366)
Q Consensus 81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~ 137 (366)
|++|.|+.+|..+..+++|+.|+|++|++.. +|. ..+. ++++|+.+++.
T Consensus 119 Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~-~~~--~~~~-----~l~~L~~L~l~ 167 (229)
T 3e6j_A 119 MCCNKLTELPRGIERLTHLTHLALDQNQLKS-IPH--GAFD-----RLSSLTHAYLF 167 (229)
T ss_dssp CCSSCCCSCCTTGGGCTTCSEEECCSSCCCC-CCT--TTTT-----TCTTCCEEECT
T ss_pred ccCCcccccCcccccCCCCCEEECCCCcCCc-cCH--HHHh-----CCCCCCEEEee
Confidence 9999999999999999999999999998553 321 2233 67888888877
No 36
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.46 E-value=8.4e-14 Score=144.89 Aligned_cols=142 Identities=15% Similarity=0.144 Sum_probs=112.9
Q ss_pred cCCCCCccEEECcCCCCCCC-----------------CCccCC--CCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEc
Q 040119 21 WFLPFPINLMRWSSDPMALS-----------------LPSSLS--GLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHL 81 (366)
Q Consensus 21 ~~~~~~L~~L~ls~n~l~~~-----------------lP~sl~--~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~L 81 (366)
...+++|+.|++++|.+.+. +|..++ ++++|++|+|++|++. +.+|..|+.+++|+.|+|
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL-TKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC-SSCCTTTTTCSSCCEEEC
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC-ccChHHHhcCCCCCEEEC
Confidence 33467799999999999975 999999 9999999999999998 899999999999999999
Q ss_pred cCCC-CC--ccchhhhCC------CCccEEEccCCcCccCCCC---C--CcccceecccCCc------------CccEee
Q 040119 82 SGNN-FF--TLPASIYRL------SKLSKIFLKDCKMLQNLPR---L--PASIHGIFLDGCV------------SLETLS 135 (366)
Q Consensus 82 s~N~-~~--~lP~~i~~L------~~L~~L~L~~n~~l~~lp~---l--p~~L~~L~~~~c~------------sL~~l~ 135 (366)
++|+ ++ .+|..++++ ++|+.|++++|++. .+|. + .+.|+.|+++++. +|+.|+
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~ 359 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLN 359 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEE
Confidence 9998 88 599999887 99999999999976 6665 1 2356666665442 233333
Q ss_pred CCCCCCcccccCCCCCCcccccCCCCCc-eEEEECCCCCC
Q 040119 136 DGYWRDCSIVVPGSEIPEWFEYQNNEGS-SITISTPPKTY 174 (366)
Q Consensus 136 ~~~f~~~~~~l~g~~iP~~f~~~~~~g~-~~~l~L~~n~~ 174 (366)
++ .+.+. .+|.+|.... + +..++++.|.+
T Consensus 360 L~-----~N~l~--~lp~~l~~l~---~~L~~L~Ls~N~l 389 (636)
T 4eco_A 360 LA-----YNQIT--EIPANFCGFT---EQVENLSFAHNKL 389 (636)
T ss_dssp CC-----SSEEE--ECCTTSEEEC---TTCCEEECCSSCC
T ss_pred CC-----CCccc--cccHhhhhhc---ccCcEEEccCCcC
Confidence 32 22222 5888887766 6 88889998887
No 37
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.46 E-value=5.7e-13 Score=120.28 Aligned_cols=126 Identities=18% Similarity=0.195 Sum_probs=95.6
Q ss_pred CCccEEEeeCCCCCCCC-CCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCc-cCCCCCCCCEE
Q 040119 2 KNLKELSFRGCKGSPSS-ASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPS-GIGNLCSLEEL 79 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~-~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~-~i~~L~sL~~L 79 (366)
++|+.|+|++|.+.... ..+..+.+|+.|++++|.+.+..|..|.++++|+.|+|++|.+.. +|. .|..+++|+.|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE--LPKSLFEGLFSLQLL 109 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC--CCTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc--cCHhHccCCCCCCEE
Confidence 46888999988855433 355667789999999999887778888889999999999999863 554 46888999999
Q ss_pred EccCCCCCcc-chhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119 80 HLSGNNFFTL-PASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG 137 (366)
Q Consensus 80 ~Ls~N~~~~l-P~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~ 137 (366)
+|++|.|+.+ |..+..+++|+.|+|++|++.+..+ ..+. .+++|+.+++.
T Consensus 110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~-----~l~~L~~L~L~ 160 (220)
T 2v9t_B 110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK---GTFS-----PLRAIQTMHLA 160 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---TTTT-----TCTTCCEEECC
T ss_pred ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH---HHHh-----CCCCCCEEEeC
Confidence 9999999876 4678888999999999988554222 1232 56677777776
No 38
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.46 E-value=8.4e-13 Score=130.87 Aligned_cols=125 Identities=15% Similarity=0.181 Sum_probs=81.0
Q ss_pred CCCccEEEeeCCCCCCC-CCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119 1 MKNLKELSFRGCKGSPS-SASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL 79 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~-~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L 79 (366)
|++|+.|+|++|.+... ...+..+++|+.|++++|.+....+..+..+++|+.|+|++|.+. ...+..|..+++|+.|
T Consensus 87 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L 165 (440)
T 3zyj_A 87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRL 165 (440)
T ss_dssp CSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEe
Confidence 46788888888874432 234556677888888888887444446778888888888888876 3334467777777777
Q ss_pred EccC-CCCCccch-hhhCCCCccEEEccCCcCccCCCCC--CcccceecccC
Q 040119 80 HLSG-NNFFTLPA-SIYRLSKLSKIFLKDCKMLQNLPRL--PASIHGIFLDG 127 (366)
Q Consensus 80 ~Ls~-N~~~~lP~-~i~~L~~L~~L~L~~n~~l~~lp~l--p~~L~~L~~~~ 127 (366)
+|++ |.+..+|. .+.++++|+.|+|++|++. .+|.+ ..+|+.|++++
T Consensus 166 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~ 216 (440)
T 3zyj_A 166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSG 216 (440)
T ss_dssp ECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCCCTTCSSCCEEECTT
T ss_pred CCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccccCCCcccCEEECCC
Confidence 7776 34555554 5667777777777777643 34543 22444444433
No 39
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.46 E-value=1.7e-13 Score=131.76 Aligned_cols=154 Identities=22% Similarity=0.215 Sum_probs=78.2
Q ss_pred CccEEEeeCCCCCCCC-CCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCcc-CCCCCCCCEEE
Q 040119 3 NLKELSFRGCKGSPSS-ASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSG-IGNLCSLEELH 80 (366)
Q Consensus 3 ~L~~L~Ls~n~~~~~~-~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~-i~~L~sL~~L~ 80 (366)
+|++|+|++|...... ..+..+++|+.|++++|.+.+..|..+.++++|+.|+|++|.+.. +|.. ++.+++|++|+
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN--LSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS--CCHHHHTTCTTCSEEE
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc--CCHhHhCCCccCCEEE
Confidence 4556666666533222 233444556666666666654444555566666666666666642 4433 55566666666
Q ss_pred ccCCCCCccch--hhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccC
Q 040119 81 LSGNNFFTLPA--SIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQ 158 (366)
Q Consensus 81 Ls~N~~~~lP~--~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~ 158 (366)
|++|.++.+|. .+.++++|+.|++++|..++.++. ..+. ++++|+.++++ .+.+.+ ..|.+|...
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~-----~l~~L~~L~l~-----~n~l~~-~~~~~l~~l 197 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR--KDFA-----GLTFLEELEID-----ASDLQS-YEPKSLKSI 197 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT--TTTT-----TCCEEEEEEEE-----ETTCCE-ECTTTTTTC
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCH--HHcc-----CCCCCCEEECC-----CCCcCc-cCHHHHhcc
Confidence 66666665554 455566666666666543322211 1111 33444444433 222221 235555554
Q ss_pred CCCCceEEEECCCCCC
Q 040119 159 NNEGSSITISTPPKTY 174 (366)
Q Consensus 159 ~~~g~~~~l~L~~n~~ 174 (366)
. ++..+++..|.+
T Consensus 198 ~---~L~~L~l~~n~l 210 (353)
T 2z80_A 198 Q---NVSHLILHMKQH 210 (353)
T ss_dssp S---EEEEEEEECSCS
T ss_pred c---cCCeecCCCCcc
Confidence 4 566666666655
No 40
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.46 E-value=1.1e-12 Score=118.29 Aligned_cols=150 Identities=21% Similarity=0.205 Sum_probs=115.9
Q ss_pred cEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCC
Q 040119 5 KELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGN 84 (366)
Q Consensus 5 ~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N 84 (366)
+.++++++....... .....|+.|++++|.+....|..+..+++|+.|+|++|.+. +..|..|..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~iP~--~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT--NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCS--SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCC--ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECCCC
Confidence 467777776433221 12367999999999998666668999999999999999998 666899999999999999999
Q ss_pred CCCccchh-hhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCCCCCc
Q 040119 85 NFFTLPAS-IYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGS 163 (366)
Q Consensus 85 ~~~~lP~~-i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~~g~ 163 (366)
.|+.+|.. +.++++|+.|+|++|++.+..| ..+. ++++|+.|+++ .+.+.+ -.|..|.... +
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~---~~~~-----~l~~L~~L~L~-----~N~l~~-~~~~~~~~l~---~ 153 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRV---DAFQ-----DLHNLNLLSLY-----DNKLQT-IAKGTFSPLR---A 153 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTT-----TCTTCCEEECC-----SSCCSC-CCTTTTTTCT---T
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCH---HHcC-----CCCCCCEEECC-----CCcCCE-ECHHHHhCCC---C
Confidence 99999875 6889999999999999664322 2333 77888888887 444433 1334566555 7
Q ss_pred eEEEECCCCCC
Q 040119 164 SITISTPPKTY 174 (366)
Q Consensus 164 ~~~l~L~~n~~ 174 (366)
+..++|..|.+
T Consensus 154 L~~L~L~~N~~ 164 (220)
T 2v9t_B 154 IQTMHLAQNPF 164 (220)
T ss_dssp CCEEECCSSCE
T ss_pred CCEEEeCCCCc
Confidence 88899999876
No 41
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.46 E-value=9.8e-13 Score=123.73 Aligned_cols=153 Identities=24% Similarity=0.233 Sum_probs=123.7
Q ss_pred CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
+++|+.|+|++|.+..... ...+++|+.|++++|.+. .+|..+..+++|+.|+|++|+++ +..|..|..+++|+.|+
T Consensus 54 l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~ 130 (290)
T 1p9a_G 54 YTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELY 130 (290)
T ss_dssp CTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCcccC-CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEE
Confidence 5789999999998554333 256788999999999998 89999999999999999999997 44457799999999999
Q ss_pred ccCCCCCccchh-hhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCC
Q 040119 81 LSGNNFFTLPAS-IYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQN 159 (366)
Q Consensus 81 Ls~N~~~~lP~~-i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~ 159 (366)
|++|.++.+|.. +..+++|+.|+|++|++. .+|.... .++++|+.|+++ .+.+. .||.++....
T Consensus 131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~----~l~~~~~----~~l~~L~~L~L~-----~N~l~--~ip~~~~~~~ 195 (290)
T 1p9a_G 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLT----ELPAGLL----NGLENLDTLLLQ-----ENSLY--TIPKGFFGSH 195 (290)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCS----CCCTTTT----TTCTTCCEEECC-----SSCCC--CCCTTTTTTC
T ss_pred CCCCCCCccChhhcccccCCCEEECCCCcCC----ccCHHHh----cCcCCCCEEECC-----CCcCC--ccChhhcccc
Confidence 999999988764 678999999999999854 3333321 267788888887 44443 5888877655
Q ss_pred CCCceEEEECCCCCC
Q 040119 160 NEGSSITISTPPKTY 174 (366)
Q Consensus 160 ~~g~~~~l~L~~n~~ 174 (366)
.+..++|..|.+
T Consensus 196 ---~L~~l~L~~Np~ 207 (290)
T 1p9a_G 196 ---LLPFAFLHGNPW 207 (290)
T ss_dssp ---CCSEEECCSCCB
T ss_pred ---cCCeEEeCCCCc
Confidence 677889998877
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.46 E-value=7.4e-13 Score=132.19 Aligned_cols=108 Identities=20% Similarity=0.228 Sum_probs=55.7
Q ss_pred CCccEEEeeCCCCCC-CCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 2 KNLKELSFRGCKGSP-SSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~-~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
++|++|+|++|.... +...+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+. +..|..|..+++|+.|+
T Consensus 80 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ 158 (477)
T 2id5_A 80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLT 158 (477)
T ss_dssp TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-EECTTSSTTCTTCCEEE
T ss_pred ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc-eeChhhccCCCCCCEEE
Confidence 344555555444222 1112333444555555555555444445555555555555555554 33445555556666666
Q ss_pred ccCCCCCccch-hhhCCCCccEEEccCCcCc
Q 040119 81 LSGNNFFTLPA-SIYRLSKLSKIFLKDCKML 110 (366)
Q Consensus 81 Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~~l 110 (366)
|++|.++.+|. .+.++++|+.|+|++|.+.
T Consensus 159 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp EESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 66666655543 3555666666666665543
No 43
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.45 E-value=8.9e-13 Score=131.15 Aligned_cols=124 Identities=13% Similarity=0.145 Sum_probs=87.5
Q ss_pred CCCccEEEeeCCCCCCC-CCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119 1 MKNLKELSFRGCKGSPS-SASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL 79 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~-~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L 79 (366)
|++|+.|+|++|.+... ...+..+++|+.|++++|.+....+..+..+++|+.|+|++|.+. ...+..|..+++|+.|
T Consensus 98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L 176 (452)
T 3zyi_A 98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRL 176 (452)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEE
Confidence 57899999999985433 344566788999999999988555556888999999999999886 3334467788888888
Q ss_pred EccC-CCCCccch-hhhCCCCccEEEccCCcCccCCCCC--Ccccceeccc
Q 040119 80 HLSG-NNFFTLPA-SIYRLSKLSKIFLKDCKMLQNLPRL--PASIHGIFLD 126 (366)
Q Consensus 80 ~Ls~-N~~~~lP~-~i~~L~~L~~L~L~~n~~l~~lp~l--p~~L~~L~~~ 126 (366)
+|++ |.+..+|. .+.++++|+.|+|++|++. .+|.+ .++|+.|+++
T Consensus 177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls 226 (452)
T 3zyi_A 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMS 226 (452)
T ss_dssp ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCCCCTTCTTCCEEECT
T ss_pred eCCCCCCccccChhhccCCCCCCEEECCCCccc-ccccccccccccEEECc
Confidence 8887 45556664 5777788888888887744 34543 2244555443
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.45 E-value=9.7e-13 Score=135.67 Aligned_cols=88 Identities=17% Similarity=0.150 Sum_probs=73.4
Q ss_pred CCCccEEEeeCCCCCCCCC-CcCCCCCccEEECcCCCCCCCCCcc-CCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCE
Q 040119 1 MKNLKELSFRGCKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSS-LSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEE 78 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~s-l~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~ 78 (366)
|++|+.|+|++|.+....+ .+..+++|+.|++++|.+. .+|.. |.++++|+.|+|++|.+. +..|..|+.+++|+.
T Consensus 98 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~ 175 (597)
T 3oja_B 98 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQN 175 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCE
T ss_pred CCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCC-CCChhhhhcCCcCcE
Confidence 5789999999998554433 3567788999999999998 55554 589999999999999998 667778999999999
Q ss_pred EEccCCCCCccc
Q 040119 79 LHLSGNNFFTLP 90 (366)
Q Consensus 79 L~Ls~N~~~~lP 90 (366)
|+|++|.++.+|
T Consensus 176 L~L~~N~l~~~~ 187 (597)
T 3oja_B 176 LQLSSNRLTHVD 187 (597)
T ss_dssp EECTTSCCSBCC
T ss_pred EECcCCCCCCcC
Confidence 999999988665
No 45
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.45 E-value=9.9e-13 Score=124.62 Aligned_cols=101 Identities=19% Similarity=0.253 Sum_probs=57.4
Q ss_pred CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEc
Q 040119 2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHL 81 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~L 81 (366)
++|+.|++++|..... +....+++|+.|++++|.+. .+|. +..+++|+.|+|++|.+.. +| .+..+++|+.|+|
T Consensus 41 ~~L~~L~l~~~~i~~l-~~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKN--VS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccCc-hhhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCC--ch-hhcCCCCCCEEEC
Confidence 3566666666653322 23344455666666666665 3444 5666666666666666642 33 4556666666666
Q ss_pred cCCCCCccchhhhCCCCccEEEccCCcC
Q 040119 82 SGNNFFTLPASIYRLSKLSKIFLKDCKM 109 (366)
Q Consensus 82 s~N~~~~lP~~i~~L~~L~~L~L~~n~~ 109 (366)
++|.++.+|. +..+++|+.|++++|++
T Consensus 115 ~~n~l~~~~~-l~~l~~L~~L~l~~n~l 141 (308)
T 1h6u_A 115 TSTQITDVTP-LAGLSNLQVLYLDLNQI 141 (308)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred CCCCCCCchh-hcCCCCCCEEECCCCcc
Confidence 6666665553 55666666666666653
No 46
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.45 E-value=6.6e-13 Score=133.89 Aligned_cols=124 Identities=17% Similarity=0.143 Sum_probs=83.1
Q ss_pred CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCC--CCCccCCCCCCCCEEE
Q 040119 3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEG--AIPSGIGNLCSLEELH 80 (366)
Q Consensus 3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~--~lP~~i~~L~sL~~L~ 80 (366)
+|+.|++++|.... ......++.|+.|++++|.+.+.+|..+..+++|+.|+|++|++. + .+|..++.+++|+.|+
T Consensus 303 ~L~~L~l~~n~l~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~l~~L~~L~ 380 (520)
T 2z7x_B 303 NIKNFTVSGTRMVH-MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLD 380 (520)
T ss_dssp CCSEEEEESSCCCC-CCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCC-BHHHHHHHHTTCTTCCEEE
T ss_pred ceeEEEcCCCcccc-ccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccC-ccccchHHHhhCCCCCEEE
Confidence 46666666665322 111245566788888888887667777778888888888888876 3 3556677788888888
Q ss_pred ccCCCCCc-cchh-hhCCCCccEEEccCCcCccCCCC-CCcccceecccCC
Q 040119 81 LSGNNFFT-LPAS-IYRLSKLSKIFLKDCKMLQNLPR-LPASIHGIFLDGC 128 (366)
Q Consensus 81 Ls~N~~~~-lP~~-i~~L~~L~~L~L~~n~~l~~lp~-lp~~L~~L~~~~c 128 (366)
|++|.+.. +|.. +..+++|+.|++++|++.+.+|. +|+.|+.|+++++
T Consensus 381 Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N 431 (520)
T 2z7x_B 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN 431 (520)
T ss_dssp CCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS
T ss_pred CCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC
Confidence 88888875 7754 66777888888888876655442 2345555555443
No 47
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.45 E-value=1.9e-13 Score=140.33 Aligned_cols=155 Identities=18% Similarity=0.122 Sum_probs=74.3
Q ss_pred CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCC-ccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLP-SSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP-~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
++|+.|+|++|........+..+++|+.|++++|.+.+..| ..+..+++|+.|+|++|.+. +..|..++.+++|+.|+
T Consensus 376 ~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ 454 (606)
T 3vq2_A 376 NSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK-IDFDGIFLGLTSLNTLK 454 (606)
T ss_dssp SCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCE-ECCTTTTTTCTTCCEEE
T ss_pred CcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCC-ccchhhhcCCCCCCEEE
Confidence 34444444444422211223334445555555555543333 34455555555555555554 44455555555555555
Q ss_pred ccCCCCCc--cchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccC
Q 040119 81 LSGNNFFT--LPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQ 158 (366)
Q Consensus 81 Ls~N~~~~--lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~ 158 (366)
|++|.+.. +|..+..+++|+.|+|++|++.+..|. .+. ++++|+.|+++ .+.+.+ .+|.+|...
T Consensus 455 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~-----~l~~L~~L~Ls-----~N~l~~-~~~~~~~~l 520 (606)
T 3vq2_A 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG---VFD-----TLHRLQLLNMS-----HNNLLF-LDSSHYNQL 520 (606)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT---TTT-----TCTTCCEEECC-----SSCCSC-EEGGGTTTC
T ss_pred CCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh---hhc-----ccccCCEEECC-----CCcCCC-cCHHHccCC
Confidence 55555542 344555555555555555554432221 111 34455555554 233322 246666655
Q ss_pred CCCCceEEEECCCCCC
Q 040119 159 NNEGSSITISTPPKTY 174 (366)
Q Consensus 159 ~~~g~~~~l~L~~n~~ 174 (366)
. ++.+++|+.|.+
T Consensus 521 ~---~L~~L~l~~N~l 533 (606)
T 3vq2_A 521 Y---SLSTLDCSFNRI 533 (606)
T ss_dssp T---TCCEEECTTSCC
T ss_pred C---cCCEEECCCCcC
Confidence 5 566777777666
No 48
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.45 E-value=5.9e-13 Score=143.14 Aligned_cols=111 Identities=14% Similarity=0.152 Sum_probs=82.3
Q ss_pred CCccEEEeeCCCCCCCCCC---cCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCC-CC
Q 040119 2 KNLKELSFRGCKGSPSSAS---WFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCS-LE 77 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~~---~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~s-L~ 77 (366)
++|+.|+|++|.+. ..+. +..+++|+.|++++|.+. .+| .+..+++|+.|+|++|.+. .+|..++.+++ |+
T Consensus 548 ~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~ 622 (876)
T 4ecn_A 548 PKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVE 622 (876)
T ss_dssp TTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS--CCCTTSCEECTTCC
T ss_pred CCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc--cchHHHhhccccCC
Confidence 57777788777765 3333 455667888888888877 777 6778888888888888875 37777888877 88
Q ss_pred EEEccCCCCCccchhhhCCCC--ccEEEccCCcCccCCCCCC
Q 040119 78 ELHLSGNNFFTLPASIYRLSK--LSKIFLKDCKMLQNLPRLP 117 (366)
Q Consensus 78 ~L~Ls~N~~~~lP~~i~~L~~--L~~L~L~~n~~l~~lp~lp 117 (366)
.|+|++|.|+.+|..+..++. |+.|+|++|++.+.+|.+|
T Consensus 623 ~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~ 664 (876)
T 4ecn_A 623 GLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664 (876)
T ss_dssp EEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS
T ss_pred EEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccch
Confidence 888888888877877666654 8888888888777666665
No 49
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.45 E-value=4.2e-13 Score=121.14 Aligned_cols=127 Identities=17% Similarity=0.128 Sum_probs=105.9
Q ss_pred CCccEEEeeCCCCCCCC--CCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119 2 KNLKELSFRGCKGSPSS--ASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL 79 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~--~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L 79 (366)
+.++.|+|++|.+.... ..+..+++|+.|++++|.+.+..|..|..+++|+.|+|++|.+. +..|..|..+++|++|
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTL 110 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCGGGGTTCSSCCEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccC-ccCHhHhcCCcCCCEE
Confidence 36789999999966542 33567788999999999999766778999999999999999997 5556679999999999
Q ss_pred EccCCCCCcc-chhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119 80 HLSGNNFFTL-PASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG 137 (366)
Q Consensus 80 ~Ls~N~~~~l-P~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~ 137 (366)
+|++|.|+.+ |..+..+++|+.|+|++|++.+..| ..+. ++++|+.++++
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~-----~l~~L~~L~L~ 161 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP---GAFD-----TLHSLSTLNLL 161 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT---TTTT-----TCTTCCEEECC
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH---HHhc-----CCCCCCEEEec
Confidence 9999999977 6789999999999999999665333 3343 67788888887
No 50
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.44 E-value=1.5e-13 Score=130.08 Aligned_cols=107 Identities=18% Similarity=0.120 Sum_probs=65.9
Q ss_pred CCccEEEeeCCCCCCCCCCc---CCCCCccEEECcCCCCCCCCC----ccCCCCCCCcEEEeecCCCCCCCCCccCCCCC
Q 040119 2 KNLKELSFRGCKGSPSSASW---FLPFPINLMRWSSDPMALSLP----SSLSGLCSLTKLDISYCDLGEGAIPSGIGNLC 74 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~~~---~~~~~L~~L~ls~n~l~~~lP----~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~ 74 (366)
++|++|+|++|......+.. ..+.+|+.|++++|.+.+..| ..+..+++|+.|+|++|.+. +..|..++.++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP-AFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC-CCCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc-hhhHHHhccCC
Confidence 45777888877744332222 445667777777777765444 23445667777777777775 45556677777
Q ss_pred CCCEEEccCCCCCc---cch--hhhCCCCccEEEccCCcC
Q 040119 75 SLEELHLSGNNFFT---LPA--SIYRLSKLSKIFLKDCKM 109 (366)
Q Consensus 75 sL~~L~Ls~N~~~~---lP~--~i~~L~~L~~L~L~~n~~ 109 (366)
+|++|+|++|++.. +|. .+..+++|++|+|++|++
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 209 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM 209 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC
Confidence 77777777776642 322 235666666666666664
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.43 E-value=2.2e-13 Score=128.10 Aligned_cols=108 Identities=21% Similarity=0.197 Sum_probs=82.0
Q ss_pred CCCccEEEeeCCCCCCC---CCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCC--ccCCCCCC
Q 040119 1 MKNLKELSFRGCKGSPS---SASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIP--SGIGNLCS 75 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~---~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP--~~i~~L~s 75 (366)
+++|++|+|++|..... ......+.+|+.|++++|.+. .+|..+..+++|+.|+|++|.+.. +| ..+..+++
T Consensus 51 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~ 127 (306)
T 2z66_A 51 LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ--MSEFSVFLSLRN 127 (306)
T ss_dssp CTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEES--STTTTTTTTCTT
T ss_pred cccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccc--cccchhhhhccC
Confidence 46788888888875422 122334677888888888886 677778888888888888888863 44 47888888
Q ss_pred CCEEEccCCCCCc-cchhhhCCCCccEEEccCCcCcc
Q 040119 76 LEELHLSGNNFFT-LPASIYRLSKLSKIFLKDCKMLQ 111 (366)
Q Consensus 76 L~~L~Ls~N~~~~-lP~~i~~L~~L~~L~L~~n~~l~ 111 (366)
|+.|+|++|.+.. .|..+..+++|+.|++++|++.+
T Consensus 128 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 8888888888884 45667888888888888888654
No 52
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.43 E-value=5.8e-13 Score=123.50 Aligned_cols=133 Identities=20% Similarity=0.294 Sum_probs=105.2
Q ss_pred CCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccc-hhhhCCCCccEEE
Q 040119 25 FPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLP-ASIYRLSKLSKIF 103 (366)
Q Consensus 25 ~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP-~~i~~L~~L~~L~ 103 (366)
..|+.|++++|.+....+..+.++++|+.|+|++|.+. +..+..+..+++|++|+|++|.++.++ ..+.++++|+.|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 56899999999998655557889999999999999997 444567899999999999999999766 6788999999999
Q ss_pred ccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119 104 LKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGSSITISTPPKTY 174 (366)
Q Consensus 104 L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~ 174 (366)
+++|++.+ ++.. . +.++++|+.|+++ .+.+.+-.+|.+|.... ++..++|+.|.+
T Consensus 107 l~~n~l~~-~~~~--~-----~~~l~~L~~L~l~-----~n~l~~~~l~~~~~~l~---~L~~L~Ls~N~l 161 (276)
T 2z62_A 107 AVETNLAS-LENF--P-----IGHLKTLKELNVA-----HNLIQSFKLPEYFSNLT---NLEHLDLSSNKI 161 (276)
T ss_dssp CTTSCCCC-STTC--C-----CTTCTTCCEEECC-----SSCCCCCCCCGGGGGCT---TCCEEECCSSCC
T ss_pred CCCCCccc-cCch--h-----cccCCCCCEEECc-----CCccceecCchhhccCC---CCCEEECCCCCC
Confidence 99998553 2221 2 3377888888887 45555545788888777 788889888877
No 53
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.43 E-value=1.7e-12 Score=115.47 Aligned_cols=110 Identities=19% Similarity=0.233 Sum_probs=92.7
Q ss_pred CCCccEEEeeCCCCCCCCC-CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119 1 MKNLKELSFRGCKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL 79 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L 79 (366)
+++|++|+|++|++....+ .+..+.+|+.|++++|.+....+..+..+++|+.|+|++|.+. +..+..+..+++|+.|
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L 129 (208)
T 2o6s_A 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDL 129 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred cccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEE
Confidence 5789999999998554333 3456788999999999998555555789999999999999997 4445568999999999
Q ss_pred EccCCCCCccchh-hhCCCCccEEEccCCcCcc
Q 040119 80 HLSGNNFFTLPAS-IYRLSKLSKIFLKDCKMLQ 111 (366)
Q Consensus 80 ~Ls~N~~~~lP~~-i~~L~~L~~L~L~~n~~l~ 111 (366)
+|++|.++.+|.. +..+++|+.|++++|++.+
T Consensus 130 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 130 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred ECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence 9999999988764 7899999999999998664
No 54
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.43 E-value=3.5e-13 Score=138.29 Aligned_cols=156 Identities=14% Similarity=0.106 Sum_probs=128.3
Q ss_pred CCCccEEEeeCCCCCCCC--CCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCC-CCCccCCCCCCCC
Q 040119 1 MKNLKELSFRGCKGSPSS--ASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEG-AIPSGIGNLCSLE 77 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~--~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~-~lP~~i~~L~sL~ 77 (366)
+++|+.|+|++|...... ..+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+. + .+|..++.+++|+
T Consensus 398 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~ 476 (606)
T 3vq2_A 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK-DNTLSNVFANTTNLT 476 (606)
T ss_dssp CTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG-GGEECSCCTTCTTCC
T ss_pred CCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCC-CcchHHhhccCCCCC
Confidence 578999999999844433 35667788999999999999889999999999999999999997 5 4799999999999
Q ss_pred EEEccCCCCCcc-chhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccc
Q 040119 78 ELHLSGNNFFTL-PASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFE 156 (366)
Q Consensus 78 ~L~Ls~N~~~~l-P~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~ 156 (366)
.|+|++|.++.+ |..+.++++|+.|+|++|++.+.+ |..+. ++++|+.|+++ .+.+. .+|.+|.
T Consensus 477 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~-----~l~~L~~L~l~-----~N~l~--~~p~~~~ 541 (606)
T 3vq2_A 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD---SSHYN-----QLYSLSTLDCS-----FNRIE--TSKGILQ 541 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEE---GGGTT-----TCTTCCEEECT-----TSCCC--CEESCGG
T ss_pred EEECCCCcCCccChhhhcccccCCEEECCCCcCCCcC---HHHcc-----CCCcCCEEECC-----CCcCc--ccCHhHh
Confidence 999999999965 678999999999999999976533 33444 77888888887 44444 5888866
Q ss_pred cCCCCCceEEEECCCCCC
Q 040119 157 YQNNEGSSITISTPPKTY 174 (366)
Q Consensus 157 ~~~~~g~~~~l~L~~n~~ 174 (366)
... .++..+++..|.+
T Consensus 542 ~l~--~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 542 HFP--KSLAFFNLTNNSV 557 (606)
T ss_dssp GSC--TTCCEEECCSCCC
T ss_pred hhc--ccCcEEEccCCCc
Confidence 543 1478899999887
No 55
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.43 E-value=6.5e-13 Score=117.28 Aligned_cols=122 Identities=18% Similarity=0.221 Sum_probs=94.5
Q ss_pred cEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCc-cCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccC
Q 040119 5 KELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPS-SLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSG 83 (366)
Q Consensus 5 ~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~-sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~ 83 (366)
+.|++++|.+... +. .....|+.|++++|.+.+..+. .+..+++|+.|+|++|.++ +..|..|+.+++|+.|+|++
T Consensus 11 ~~l~~s~~~l~~i-p~-~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEI-PR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSC-CS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcC-cc-CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC-CcCHhHcCCcccCCEEECCC
Confidence 6788988875322 22 1223799999999999854443 3789999999999999998 66788999999999999999
Q ss_pred CCCCccch-hhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119 84 NNFFTLPA-SIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG 137 (366)
Q Consensus 84 N~~~~lP~-~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~ 137 (366)
|.|+.+|. .+.++++|+.|+|++|++.+..|. .+. .+++|+.++++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~-----~l~~L~~L~L~ 134 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG---SFE-----HLNSLTSLNLA 134 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTT---SST-----TCTTCCEEECT
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH---Hhh-----cCCCCCEEEeC
Confidence 99997764 588999999999999997764443 333 56677777776
No 56
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.42 E-value=3.7e-12 Score=131.01 Aligned_cols=111 Identities=24% Similarity=0.330 Sum_probs=63.0
Q ss_pred CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEcc
Q 040119 3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLS 82 (366)
Q Consensus 3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls 82 (366)
+|+.|+|++|.+.. .+... .++|+.|++++|.+. .+| ..+++|+.|+|++|+++ + +|. ++. +|+.|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l-~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL-PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-T-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC-CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-C-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH-cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-C-cch-hhc--CCCEEECC
Confidence 56666676666433 22211 245666666666665 555 34566666666666665 2 555 443 56666666
Q ss_pred CCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCC
Q 040119 83 GNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGC 128 (366)
Q Consensus 83 ~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c 128 (366)
+|.|+.+|. .+++|+.|+|++|++.+ +|..+++|+.|+++++
T Consensus 129 ~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 129 NNQLTMLPE---LPALLEYINADNNQLTM-LPELPTSLEVLSVRNN 170 (571)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSS
T ss_pred CCcCCCCCC---cCccccEEeCCCCccCc-CCCcCCCcCEEECCCC
Confidence 666666665 45566666666665443 5555555555555544
No 57
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.42 E-value=3.1e-12 Score=124.43 Aligned_cols=104 Identities=15% Similarity=0.108 Sum_probs=80.1
Q ss_pred CCCccEEEeeCCCCCCCC-CCcCCCCCccEEECcCCCCCCCCCcc-CCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCE
Q 040119 1 MKNLKELSFRGCKGSPSS-ASWFLPFPINLMRWSSDPMALSLPSS-LSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEE 78 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~-~~~~~~~~L~~L~ls~n~l~~~lP~s-l~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~ 78 (366)
+++|++|+|++|...... ..+..+++|+.|++++|.+. .+|.. +..+++|+.|+|++|.+. +..|..++.+++|+.
T Consensus 92 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 169 (390)
T 3o6n_A 92 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQN 169 (390)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCE
T ss_pred CCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCE
Confidence 578999999999855443 33567788999999999998 66665 588999999999999997 556777999999999
Q ss_pred EEccCCCCCccchhhhCCCCccEEEccCCc
Q 040119 79 LHLSGNNFFTLPASIYRLSKLSKIFLKDCK 108 (366)
Q Consensus 79 L~Ls~N~~~~lP~~i~~L~~L~~L~L~~n~ 108 (366)
|+|++|.++.++ +..+++|+.|++++|.
T Consensus 170 L~l~~n~l~~~~--~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 170 LQLSSNRLTHVD--LSLIPSLFHANVSYNL 197 (390)
T ss_dssp EECCSSCCSBCC--GGGCTTCSEEECCSSC
T ss_pred EECCCCcCCccc--cccccccceeeccccc
Confidence 999999998765 3344444444444443
No 58
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.41 E-value=3.7e-13 Score=136.41 Aligned_cols=112 Identities=21% Similarity=0.205 Sum_probs=84.1
Q ss_pred CCccEEEeeCCCCCCC-CCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 2 KNLKELSFRGCKGSPS-SASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~-~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
++|++|+|++|..... ...+..+++|++|++++|.+.+..|..|.++++|++|+|++|.+. +..|..|+.+++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEEE
Confidence 4688888888875433 334556677888888888888666677888888888888888886 44445588888888888
Q ss_pred ccCCCCCc--cchhhhCCCCccEEEccCCcCccCCC
Q 040119 81 LSGNNFFT--LPASIYRLSKLSKIFLKDCKMLQNLP 114 (366)
Q Consensus 81 Ls~N~~~~--lP~~i~~L~~L~~L~L~~n~~l~~lp 114 (366)
|++|.++. +|..++++++|+.|++++|+..+.+|
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 140 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccC
Confidence 88888874 46678888888888888887655554
No 59
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.41 E-value=5.4e-12 Score=119.95 Aligned_cols=104 Identities=17% Similarity=0.215 Sum_probs=77.7
Q ss_pred CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEcc
Q 040119 3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLS 82 (366)
Q Consensus 3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls 82 (366)
+|+.++++++....... ...+.++.|++++|.+.+..+..+.++++|++|+|++|.+. +..|..|+.+++|++|+|+
T Consensus 32 ~l~~l~~~~~~l~~lp~--~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPK--DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCC--SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCc--cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC-eeCHHHhcCCCCCCEEECC
Confidence 57778887776432211 12356888888888887555557888888888888888887 5557888888888888888
Q ss_pred CCCCCccchhhhCCCCccEEEccCCcCcc
Q 040119 83 GNNFFTLPASIYRLSKLSKIFLKDCKMLQ 111 (366)
Q Consensus 83 ~N~~~~lP~~i~~L~~L~~L~L~~n~~l~ 111 (366)
+|.++.+|..+. ++|+.|++++|++.+
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~ 135 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEITK 135 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCCB
T ss_pred CCcCCccChhhc--ccccEEECCCCcccc
Confidence 888888887654 688888888887554
No 60
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.41 E-value=1.9e-12 Score=128.12 Aligned_cols=128 Identities=16% Similarity=0.193 Sum_probs=100.4
Q ss_pred CCccEEEeeCCCCCCC-CCCcCCCCCccEEECcCCCCCCCC-CccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119 2 KNLKELSFRGCKGSPS-SASWFLPFPINLMRWSSDPMALSL-PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL 79 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~-~~~~~~~~~L~~L~ls~n~l~~~l-P~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L 79 (366)
++|++|+|++|.+... ...+..+.+|+.|++++|.+.+.+ |..|.++++|++|+|++|.+. +..|..|+.+++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC-EECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccC-ccChhhccCcccCCEE
Confidence 5789999999986543 344667788999999999987555 567899999999999999997 6678899999999999
Q ss_pred EccCCCCCc-cchh--hhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119 80 HLSGNNFFT-LPAS--IYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG 137 (366)
Q Consensus 80 ~Ls~N~~~~-lP~~--i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~ 137 (366)
+|++|.++. +|.. +.++++|+.|+|++|++.+..|. .+ +.++++|+.|+++
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~----~~~l~~L~~L~L~ 162 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA---SF----FLNMRRFHVLDLT 162 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC---GG----GGGCTTCCEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc---cc----cCCCCcccEEeCC
Confidence 999999984 4544 88999999999999997654343 10 1245556665554
No 61
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.41 E-value=1.3e-12 Score=115.68 Aligned_cols=120 Identities=18% Similarity=0.205 Sum_probs=97.3
Q ss_pred cEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCC
Q 040119 5 KELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGN 84 (366)
Q Consensus 5 ~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N 84 (366)
+.+++++|.+..... .....|+.|++++|.+. .+|..+..+++|+.|+|++|.+. +..|..|..+++|+.|+|++|
T Consensus 13 ~~l~~~~~~l~~ip~--~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK--GIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCS--CCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCC--CCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCCC
Confidence 578888887443221 12357999999999998 89999999999999999999998 555678999999999999999
Q ss_pred CCCccch-hhhCCCCccEEEccCCcCccCCCCCCcc-cceecccCCcCccEeeCC
Q 040119 85 NFFTLPA-SIYRLSKLSKIFLKDCKMLQNLPRLPAS-IHGIFLDGCVSLETLSDG 137 (366)
Q Consensus 85 ~~~~lP~-~i~~L~~L~~L~L~~n~~l~~lp~lp~~-L~~L~~~~c~sL~~l~~~ 137 (366)
.|+.+|. .+.++++|+.|+|++|++.. +|.. +. ++++|+.+++.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~----~~~~~~~-----~l~~L~~L~L~ 134 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISV----VPEGAFN-----DLSALSHLAIG 134 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCB----CCTTTTT-----TCTTCCEEECC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCe----eChhhhh-----cCccccEEEeC
Confidence 9998864 79999999999999999553 3322 32 66778888877
No 62
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.41 E-value=1.8e-13 Score=144.64 Aligned_cols=110 Identities=19% Similarity=0.215 Sum_probs=85.0
Q ss_pred CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
+++|+.|+|++|.+.........+.+|+.|+|++|.+. .+|..|.+|++|+.|+|++|.|+. +|..|+.|++|++|+
T Consensus 223 l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 223 DQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS--LPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS--CCSSGGGGTTCSEEE
T ss_pred CCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc--cChhhcCCCCCCEEE
Confidence 45788888888875533333345677888888888887 788888888888888888888863 788888888888888
Q ss_pred ccCCCCCccchhhhCCCCccEEEccCCcCccCC
Q 040119 81 LSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNL 113 (366)
Q Consensus 81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~l 113 (366)
|++|.|+.+|..|++|++|+.|+|++|++.+.+
T Consensus 300 L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 300 FFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp CCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHH
T ss_pred CCCCCCCccChhhhcCCCccEEeCCCCccCCCC
Confidence 888888888888888888888888888876544
No 63
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.40 E-value=4.3e-13 Score=116.49 Aligned_cols=127 Identities=18% Similarity=0.164 Sum_probs=96.4
Q ss_pred CCCccEEEeeCCCCCCCCCCcCCC-CCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccC-CCCCCCCE
Q 040119 1 MKNLKELSFRGCKGSPSSASWFLP-FPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEE 78 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~~~~~-~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i-~~L~sL~~ 78 (366)
+++|+.|+|++|.+... +..... ++|+.|++++|.+.+ + ..+..+++|+.|+|++|.+.. +|..+ +.+++|+.
T Consensus 18 ~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICR--IGEGLDQALPDLTE 92 (176)
T ss_dssp TTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCE--ECSCHHHHCTTCCE
T ss_pred cCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccc--cCcchhhcCCCCCE
Confidence 36789999999986543 333333 489999999999984 4 568999999999999999963 66554 88999999
Q ss_pred EEccCCCCCccch--hhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119 79 LHLSGNNFFTLPA--SIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG 137 (366)
Q Consensus 79 L~Ls~N~~~~lP~--~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~ 137 (366)
|+|++|.|..+|. .+..+++|+.|++++|++. .+| .. +...+..+++|+.++++
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~---~~-~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKK---HY-RLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GST---TH-HHHHHHHCTTCSEETTE
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcH---hH-HHHHHHHCCccceeCCC
Confidence 9999999999987 8899999999999999854 233 22 00012367777777765
No 64
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.40 E-value=2.8e-12 Score=122.13 Aligned_cols=105 Identities=20% Similarity=0.168 Sum_probs=73.1
Q ss_pred CCccEEEeeCCCCCCC-CCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 2 KNLKELSFRGCKGSPS-SASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~-~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
++|+.|+|++|..... ...+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+.+ +|..+. ++|++|+
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPPNLP--SSLVELR 129 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCcccc--ccCCEEE
Confidence 4577777777764432 2345556677777777777776667777777777777777777753 676655 6777777
Q ss_pred ccCCCCCccch-hhhCCCCccEEEccCCcCc
Q 040119 81 LSGNNFFTLPA-SIYRLSKLSKIFLKDCKML 110 (366)
Q Consensus 81 Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~~l 110 (366)
+++|.++.+|. .+.++++|+.|++++|++.
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 77777776664 4677788888888877753
No 65
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.40 E-value=9.3e-13 Score=134.72 Aligned_cols=106 Identities=17% Similarity=0.153 Sum_probs=80.7
Q ss_pred CccEEEeeCCCCCC-CCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCC-ccCCCCCCCCEEE
Q 040119 3 NLKELSFRGCKGSP-SSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIP-SGIGNLCSLEELH 80 (366)
Q Consensus 3 ~L~~L~Ls~n~~~~-~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP-~~i~~L~sL~~L~ 80 (366)
++++|+|++|++.. +...+..+++|++|+|++|.+.+..|.+|.+|++|++|+|++|++.. +| ..|..|++|++|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~--l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS--LALGAFSGLSSLQKLV 130 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE--ECGGGGTTCTTCCEEE
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC--CCHHHhcCCCCCCEEE
Confidence 67888888888543 33456677788888888888875555667888888888888888863 54 4578888888888
Q ss_pred ccCCCCCccch-hhhCCCCccEEEccCCcCc
Q 040119 81 LSGNNFFTLPA-SIYRLSKLSKIFLKDCKML 110 (366)
Q Consensus 81 Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~~l 110 (366)
|++|+++.+|. .|+++++|+.|+|++|++.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~ 161 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQ 161 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccc
Confidence 88888887765 5788888888888888754
No 66
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.40 E-value=5e-13 Score=135.41 Aligned_cols=159 Identities=15% Similarity=0.137 Sum_probs=115.4
Q ss_pred CCccEEEeeCCCCCCCCCC-cCCCCCccEEECcCCCCCCCCC---ccCCCCCCCcEEEeecCCCCCCCCC---ccCCCCC
Q 040119 2 KNLKELSFRGCKGSPSSAS-WFLPFPINLMRWSSDPMALSLP---SSLSGLCSLTKLDISYCDLGEGAIP---SGIGNLC 74 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~~-~~~~~~L~~L~ls~n~l~~~lP---~sl~~L~~L~~L~Ls~n~l~~~~lP---~~i~~L~ 74 (366)
++|+.|++++|........ +..+++|+.|++++|.+.+.+| ..+..+++|+.|+|++|++.. +| ..++.++
T Consensus 310 ~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~~l~ 387 (549)
T 2z81_A 310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS--MQKTGEILLTLK 387 (549)
T ss_dssp TTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC--HHHHHHHGGGCT
T ss_pred ccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc--cccchhhhhcCC
Confidence 4678888888874422111 1346789999999999887654 336788899999999999863 44 3578889
Q ss_pred CCCEEEccCCCCCccchhhhCCCCccEEEccCCcCccCCC-CCCcccceecccC---------CcCccEeeCCCCCCccc
Q 040119 75 SLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLP-RLPASIHGIFLDG---------CVSLETLSDGYWRDCSI 144 (366)
Q Consensus 75 sL~~L~Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp-~lp~~L~~L~~~~---------c~sL~~l~~~~f~~~~~ 144 (366)
+|+.|+|++|+|+.+|..+..+++|++|++++|++.. +| .+|++++.|++++ +++|+.|+++ .+
T Consensus 388 ~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls-----~N 461 (549)
T 2z81_A 388 NLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYIS-----RN 461 (549)
T ss_dssp TCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSC-CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECC-----SS
T ss_pred CCCEEECCCCCCccCChhhcccccccEEECCCCCccc-ccchhcCCceEEECCCCChhhhcccCChhcEEECC-----CC
Confidence 9999999999999999888888999999999998553 43 4466888888765 4667777766 33
Q ss_pred ccCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119 145 VVPGSEIPEWFEYQNNEGSSITISTPPKTY 174 (366)
Q Consensus 145 ~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~ 174 (366)
.+. .||.+ .... ++..++|+.|.+
T Consensus 462 ~l~--~ip~~-~~l~---~L~~L~Ls~N~l 485 (549)
T 2z81_A 462 KLK--TLPDA-SLFP---VLLVMKISRNQL 485 (549)
T ss_dssp CCS--SCCCG-GGCT---TCCEEECCSSCC
T ss_pred ccC--cCCCc-ccCc---cCCEEecCCCcc
Confidence 333 57764 2333 677888888777
No 67
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.40 E-value=2.3e-12 Score=117.00 Aligned_cols=167 Identities=12% Similarity=0.105 Sum_probs=98.8
Q ss_pred CCccEEEeeCCCCCCC-CCCcCCCCCccEEECcCCC-CCCCCCccCCCCCCCcEEEeec-CCCCCCCCCccCCCCCCCCE
Q 040119 2 KNLKELSFRGCKGSPS-SASWFLPFPINLMRWSSDP-MALSLPSSLSGLCSLTKLDISY-CDLGEGAIPSGIGNLCSLEE 78 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~-~~~~~~~~~L~~L~ls~n~-l~~~lP~sl~~L~~L~~L~Ls~-n~l~~~~lP~~i~~L~sL~~ 78 (366)
++|+.|+|++|++... ...+..+++|+.|++++|. +....+..+.++++|+.|+|++ |.+. +..|..|..+++|+.
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCE
Confidence 3677888888874433 2345566778888888886 6633344677778888888887 7775 333356777778888
Q ss_pred EEccCCCCCccchhhhCCCCcc---EEEccCCcCccCCCC--C--Ccccc-eecccCCcCccEeeCCCCCCc---ccccC
Q 040119 79 LHLSGNNFFTLPASIYRLSKLS---KIFLKDCKMLQNLPR--L--PASIH-GIFLDGCVSLETLSDGYWRDC---SIVVP 147 (366)
Q Consensus 79 L~Ls~N~~~~lP~~i~~L~~L~---~L~L~~n~~l~~lp~--l--p~~L~-~L~~~~c~sL~~l~~~~f~~~---~~~l~ 147 (366)
|+|++|.++.+|. +..+++|+ .|++++|..+..+|. + ...++ .|+++++ .++.++...|... .+.+.
T Consensus 110 L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 110 LGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECT
T ss_pred EeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcC
Confidence 8888888777775 66666666 778877722333332 1 12344 4544333 1222222222211 12222
Q ss_pred CC----CC-CcccccC-CCCCceEEEECCCCCC
Q 040119 148 GS----EI-PEWFEYQ-NNEGSSITISTPPKTY 174 (366)
Q Consensus 148 g~----~i-P~~f~~~-~~~g~~~~l~L~~n~~ 174 (366)
+. .+ |.+|... . ++..++++.|.+
T Consensus 188 ~n~~l~~i~~~~~~~l~~---~L~~L~l~~N~l 217 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYS---GPSLLDVSQTSV 217 (239)
T ss_dssp TCTTCCEECTTTTTTCSB---CCSEEECTTCCC
T ss_pred CCCCcccCCHHHhhcccc---CCcEEECCCCcc
Confidence 22 23 3455554 4 688899998887
No 68
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=9.1e-13 Score=135.53 Aligned_cols=123 Identities=18% Similarity=0.175 Sum_probs=99.1
Q ss_pred CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEcc
Q 040119 3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLS 82 (366)
Q Consensus 3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls 82 (366)
.|+.|+|++|.+... +.+..+.+|+.|++++|.+. .+|..++.+++|+.|+|++|.++. +| .++.|++|+.|+|+
T Consensus 442 ~L~~L~Ls~n~l~~l-p~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSSC-CCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCCC-cCccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECC
Confidence 588999999986543 33666788999999999998 899999999999999999999973 78 89999999999999
Q ss_pred CCCCCcc--chhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEee
Q 040119 83 GNNFFTL--PASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135 (366)
Q Consensus 83 ~N~~~~l--P~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~ 135 (366)
+|.|+.+ |..++.+++|+.|+|++|++.+..|....-+ ..+++|+.|+
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~-----~~lp~L~~L~ 566 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA-----EMLPSVSSIL 566 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHH-----HHCTTCSEEE
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHH-----HHCcccCccC
Confidence 9999977 8899999999999999999665333221111 1456666664
No 69
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=6.3e-13 Score=114.19 Aligned_cols=107 Identities=20% Similarity=0.090 Sum_probs=94.7
Q ss_pred CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCC--ccCCCCCCCCE
Q 040119 1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIP--SGIGNLCSLEE 78 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP--~~i~~L~sL~~ 78 (366)
+++|+.|+|++|..... ..+..+++|+.|++++|.+.+.+|..+..+++|+.|+|++|.+.. +| ..+..+++|+.
T Consensus 48 l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~l~~l~~L~~ 124 (168)
T 2ell_A 48 FVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD--ISTLEPLKKLECLKS 124 (168)
T ss_dssp GGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS--SGGGGGGSSCSCCCE
T ss_pred CCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc--chhHHHHhcCCCCCE
Confidence 47899999999996555 666677889999999999997688877789999999999999974 55 78999999999
Q ss_pred EEccCCCCCccch----hhhCCCCccEEEccCCcCc
Q 040119 79 LHLSGNNFFTLPA----SIYRLSKLSKIFLKDCKML 110 (366)
Q Consensus 79 L~Ls~N~~~~lP~----~i~~L~~L~~L~L~~n~~l 110 (366)
|+|++|.++.+|. .+..+++|+.|++++|...
T Consensus 125 L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 125 LDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 9999999998886 7899999999999999843
No 70
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.39 E-value=2.3e-12 Score=129.87 Aligned_cols=135 Identities=16% Similarity=0.162 Sum_probs=103.8
Q ss_pred ccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCc---cchhhhCCCCccEEE
Q 040119 27 INLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFT---LPASIYRLSKLSKIF 103 (366)
Q Consensus 27 L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~---lP~~i~~L~~L~~L~ 103 (366)
|+.|++++|.+. .++. ...+++|+.|+|++|.+. +.+|..++.+++|+.|+|++|+++. +|..+..+++|+.|+
T Consensus 304 L~~L~l~~n~l~-~~~~-~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~ 380 (520)
T 2z7x_B 304 IKNFTVSGTRMV-HMLC-PSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380 (520)
T ss_dssp CSEEEEESSCCC-CCCC-CSSCCCCCEEECCSSCCC-TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEE
T ss_pred eeEEEcCCCccc-cccc-hhhCCcccEEEeECCccC-hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEE
Confidence 444444444443 1211 268899999999999998 7889999999999999999999995 557899999999999
Q ss_pred ccCCcCccCCCC----CCcccceecccCC-----------cCccEeeCCCCCCcccccCCCCCCcccccCCCCCceEEEE
Q 040119 104 LKDCKMLQNLPR----LPASIHGIFLDGC-----------VSLETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGSSITIS 168 (366)
Q Consensus 104 L~~n~~l~~lp~----lp~~L~~L~~~~c-----------~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~~g~~~~l~ 168 (366)
+++|++.+.+|. ..+.|+.|+++++ ++|+.|+++ .+.+. .||.++.... ++..++
T Consensus 381 Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls-----~N~l~--~ip~~~~~l~---~L~~L~ 450 (520)
T 2z7x_B 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLH-----SNKIK--SIPKQVVKLE---ALQELN 450 (520)
T ss_dssp CCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECC-----SSCCC--CCCGGGGGCT---TCCEEE
T ss_pred CCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECC-----CCccc--ccchhhhcCC---CCCEEE
Confidence 999998775653 1357788887766 467777766 34443 6898887655 788999
Q ss_pred CCCCCC
Q 040119 169 TPPKTY 174 (366)
Q Consensus 169 L~~n~~ 174 (366)
|..|.+
T Consensus 451 L~~N~l 456 (520)
T 2z7x_B 451 VASNQL 456 (520)
T ss_dssp CCSSCC
T ss_pred CCCCcC
Confidence 999888
No 71
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.39 E-value=1.5e-12 Score=133.52 Aligned_cols=164 Identities=16% Similarity=0.094 Sum_probs=103.9
Q ss_pred CCCccEEEeeCCCCCC--CCCCcCCCCCccEEECcCCCCCCCC--CccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCC
Q 040119 1 MKNLKELSFRGCKGSP--SSASWFLPFPINLMRWSSDPMALSL--PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSL 76 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~--~~~~~~~~~~L~~L~ls~n~l~~~l--P~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL 76 (366)
+++|++|+|++|.... +...+..+++|+.|++++|.+.+.. |..+..+++|+.|+|++|.+. +..|..++.+++|
T Consensus 324 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L 402 (606)
T 3t6q_A 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAFKECPQL 402 (606)
T ss_dssp CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE-EECTTTTTTCTTC
T ss_pred cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC-cCCHHHhcCCccC
Confidence 4678888888887442 3333455677888888888876543 666778888888888888876 5567777778888
Q ss_pred CEEEccCCCCCcc-c-hhhhCCCCccEEEccCCcCccCCCCC---CcccceecccCC----------------cCccEee
Q 040119 77 EELHLSGNNFFTL-P-ASIYRLSKLSKIFLKDCKMLQNLPRL---PASIHGIFLDGC----------------VSLETLS 135 (366)
Q Consensus 77 ~~L~Ls~N~~~~l-P-~~i~~L~~L~~L~L~~n~~l~~lp~l---p~~L~~L~~~~c----------------~sL~~l~ 135 (366)
+.|+|++|.+... | ..+.++++|+.|++++|++.+..|.. .++|+.|+++++ ++|+.|+
T Consensus 403 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~ 482 (606)
T 3t6q_A 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482 (606)
T ss_dssp SEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEE
T ss_pred CeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEE
Confidence 8888888877743 3 34777778888888887765544432 234444444333 3444444
Q ss_pred CCCCCCcccccCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119 136 DGYWRDCSIVVPGSEIPEWFEYQNNEGSSITISTPPKTY 174 (366)
Q Consensus 136 ~~~f~~~~~~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~ 174 (366)
++ .+.+.+ .+|.+|.... ++..++|+.|.+
T Consensus 483 Ls-----~n~l~~-~~~~~~~~l~---~L~~L~Ls~N~l 512 (606)
T 3t6q_A 483 LS-----FCDLSS-IDQHAFTSLK---MMNHVDLSHNRL 512 (606)
T ss_dssp CT-----TSCCCE-ECTTTTTTCT---TCCEEECCSSCC
T ss_pred CC-----CCccCc-cChhhhcccc---CCCEEECCCCcc
Confidence 43 222221 2355555544 566677766665
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.39 E-value=1.2e-12 Score=118.87 Aligned_cols=145 Identities=10% Similarity=0.114 Sum_probs=99.6
Q ss_pred CCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCC-CCCCCCC-ccCCCCCCCCEEEccC-CCCCccc-hhhhCCCC
Q 040119 23 LPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCD-LGEGAIP-SGIGNLCSLEELHLSG-NNFFTLP-ASIYRLSK 98 (366)
Q Consensus 23 ~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~-l~~~~lP-~~i~~L~sL~~L~Ls~-N~~~~lP-~~i~~L~~ 98 (366)
....|+.|++++|.+.+..+..+.++++|+.|+|++|. +. .+| ..|..+++|++|+|++ |.++.+| ..+.++++
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~--~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~ 106 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ--QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL 106 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC--EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTT
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc--eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCC
Confidence 34579999999999986555589999999999999997 75 355 5789999999999998 9999887 47889999
Q ss_pred ccEEEccCCcCccCCCCC--Ccccc---eecccCCcCccEeeCCCCCCc-----ccccCCC---CCCcccccCCCCCceE
Q 040119 99 LSKIFLKDCKMLQNLPRL--PASIH---GIFLDGCVSLETLSDGYWRDC-----SIVVPGS---EIPEWFEYQNNEGSSI 165 (366)
Q Consensus 99 L~~L~L~~n~~l~~lp~l--p~~L~---~L~~~~c~sL~~l~~~~f~~~-----~~~l~g~---~iP~~f~~~~~~g~~~ 165 (366)
|+.|++++|++.+ +|.+ ..+++ .|+++++..++.++...|.++ .+.+.+. .||.+..... ++.
T Consensus 107 L~~L~l~~n~l~~-lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~---~L~ 182 (239)
T 2xwt_C 107 LKFLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT---KLD 182 (239)
T ss_dssp CCEEEEEEECCCS-CCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTC---EEE
T ss_pred CCEEeCCCCCCcc-ccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCC---CCC
Confidence 9999999998654 6642 12333 555555444444443323222 1122222 2444332223 566
Q ss_pred EEECCCCC
Q 040119 166 TISTPPKT 173 (366)
Q Consensus 166 ~l~L~~n~ 173 (366)
.++|+.|.
T Consensus 183 ~L~L~~n~ 190 (239)
T 2xwt_C 183 AVYLNKNK 190 (239)
T ss_dssp EEECTTCT
T ss_pred EEEcCCCC
Confidence 77777763
No 73
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.39 E-value=3.1e-12 Score=131.30 Aligned_cols=108 Identities=24% Similarity=0.183 Sum_probs=48.4
Q ss_pred CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCcc-CCCCCCCCEEE
Q 040119 2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSG-IGNLCSLEELH 80 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~-i~~L~sL~~L~ 80 (366)
++|+.|+|++|...........+++|+.|++++|.+....|..+..+++|+.|+|++|.+. +.+|.. ++.+++|+.|+
T Consensus 278 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~l~~L~~L~ 356 (606)
T 3t6q_A 278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR-LELGTGCLENLENLRELD 356 (606)
T ss_dssp TTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSC-CBCCSSTTTTCTTCCEEE
T ss_pred cCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcc-cccchhhhhccCcCCEEE
Confidence 3444444444443322222233344444444444444333444444444444444444444 334332 44555555555
Q ss_pred ccCCCCCcc---chhhhCCCCccEEEccCCcCc
Q 040119 81 LSGNNFFTL---PASIYRLSKLSKIFLKDCKML 110 (366)
Q Consensus 81 Ls~N~~~~l---P~~i~~L~~L~~L~L~~n~~l 110 (366)
|++|.++.+ |..+.++++|+.|++++|++.
T Consensus 357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 389 (606)
T 3t6q_A 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389 (606)
T ss_dssp CCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE
T ss_pred CCCCccccccCcchhcccCCCCCEEECCCCcCC
Confidence 555555433 334455555555555555443
No 74
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.39 E-value=3.2e-12 Score=130.73 Aligned_cols=133 Identities=20% Similarity=0.289 Sum_probs=106.5
Q ss_pred CCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccch-hhhCCCCccEEE
Q 040119 25 FPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPA-SIYRLSKLSKIF 103 (366)
Q Consensus 25 ~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~-~i~~L~~L~~L~ 103 (366)
..++.|+|++|.|....|.+|.++++|++|+|++|+|. +..|..|..|++|++|+|++|+|+.+|. .+.+|++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 46999999999999655678999999999999999997 4445679999999999999999999885 689999999999
Q ss_pred ccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119 104 LKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGSSITISTPPKTY 174 (366)
Q Consensus 104 L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~ 174 (366)
|++|++.+ +|.. .+. ++++|+.|+++ .+.+.+..+|..+.... .+..++|+.|.+
T Consensus 131 Ls~N~l~~-l~~~--~~~-----~L~~L~~L~Ls-----~N~l~~~~~~~~~~~l~---~L~~L~L~~N~l 185 (635)
T 4g8a_A 131 AVETNLAS-LENF--PIG-----HLKTLKELNVA-----HNLIQSFKLPEYFSNLT---NLEHLDLSSNKI 185 (635)
T ss_dssp CTTSCCCC-STTC--CCT-----TCTTCCEEECC-----SSCCCCCCCCGGGGGCT---TCCEEECCSSCC
T ss_pred CCCCcCCC-CChh--hhh-----cCcccCeeccc-----cCccccCCCchhhccch---hhhhhcccCccc
Confidence 99998553 3321 233 77888888877 55555556777777666 677777777766
No 75
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.39 E-value=1.6e-12 Score=132.05 Aligned_cols=128 Identities=18% Similarity=0.148 Sum_probs=95.7
Q ss_pred CCccEEEeeCCCCCC-CCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 2 KNLKELSFRGCKGSP-SSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~-~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
++|++|+|++|.... +...+..+++|+.|++++|.+.+..|..|.++++|++|+|++|.+. +..|..|+.+++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCcccccccc
Confidence 468889999888543 3335666788999999999888666677888999999999999887 44557888899999999
Q ss_pred ccCCCCCccch-hhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119 81 LSGNNFFTLPA-SIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG 137 (366)
Q Consensus 81 Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~ 137 (366)
|++|+++.+|. .++++++|++|++++|.+... .+|..+. ++++|+.|+++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~--~lp~~~~-----~l~~L~~L~l~ 157 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPEYFS-----NLTNLEHLDLS 157 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCC--CCCGGGG-----GCTTCCEEECT
T ss_pred ccccccccCCCccccccccccEEecCCCcccee--cChhhhc-----ccCCCCEEeCc
Confidence 99998888775 688889999999998885531 1233333 45555555554
No 76
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.39 E-value=3.8e-12 Score=121.24 Aligned_cols=159 Identities=17% Similarity=0.205 Sum_probs=110.0
Q ss_pred CCCccEEEeeCCCCCCC-CCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119 1 MKNLKELSFRGCKGSPS-SASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL 79 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~-~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L 79 (366)
+++|++|+|++|..... ...+..+++|+.|++++|.+. .+|..+. ++|+.|+|++|.+. +..+..+..+++|+.|
T Consensus 77 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L 152 (332)
T 2ft3_A 77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCI 152 (332)
T ss_dssp CTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEE
T ss_pred CCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEE
Confidence 57899999999986543 334556788999999999997 7887665 78999999999997 3334568899999999
Q ss_pred EccCCCCC---ccchhhhCCCCccEEEccCCcCccCCC-CCCcccceecccCC-------------cCccEeeCCCCCCc
Q 040119 80 HLSGNNFF---TLPASIYRLSKLSKIFLKDCKMLQNLP-RLPASIHGIFLDGC-------------VSLETLSDGYWRDC 142 (366)
Q Consensus 80 ~Ls~N~~~---~lP~~i~~L~~L~~L~L~~n~~l~~lp-~lp~~L~~L~~~~c-------------~sL~~l~~~~f~~~ 142 (366)
++++|.++ ..|..+..+ +|+.|++++|++.+ +| .++++|+.|+++++ ++|+.|+++
T Consensus 153 ~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~----- 225 (332)
T 2ft3_A 153 EMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG----- 225 (332)
T ss_dssp ECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCC-----
T ss_pred ECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECC-----
Confidence 99999987 345667777 88888998888654 44 34566777765543 344444443
Q ss_pred ccccCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119 143 SIVVPGSEIPEWFEYQNNEGSSITISTPPKTY 174 (366)
Q Consensus 143 ~~~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~ 174 (366)
.+.+.+ ..|.+|.... ++..++|..|.+
T Consensus 226 ~N~l~~-~~~~~~~~l~---~L~~L~L~~N~l 253 (332)
T 2ft3_A 226 HNQIRM-IENGSLSFLP---TLRELHLDNNKL 253 (332)
T ss_dssp SSCCCC-CCTTGGGGCT---TCCEEECCSSCC
T ss_pred CCcCCc-CChhHhhCCC---CCCEEECCCCcC
Confidence 222221 1234555544 566677776665
No 77
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.39 E-value=6.7e-13 Score=127.57 Aligned_cols=107 Identities=20% Similarity=0.247 Sum_probs=75.8
Q ss_pred CCCccEEEeeCCCCCCCCCC-cCCCCCccEEECcCCCCCCCCCc--cCCCCCCCcEEEeecCC-CCCCCCCccCCCCCCC
Q 040119 1 MKNLKELSFRGCKGSPSSAS-WFLPFPINLMRWSSDPMALSLPS--SLSGLCSLTKLDISYCD-LGEGAIPSGIGNLCSL 76 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~-~~~~~~L~~L~ls~n~l~~~lP~--sl~~L~~L~~L~Ls~n~-l~~~~lP~~i~~L~sL 76 (366)
+++|++|+|++|......+. +..+++|+.|++++|.+. .+|. .+..+++|+.|+|++|+ +. +..|..++.+++|
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L 176 (353)
T 2z80_A 99 LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFL 176 (353)
T ss_dssp CTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEE
T ss_pred CCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCC
Confidence 46788888888875533322 455677888888888887 5554 67778888888888884 43 3335677778888
Q ss_pred CEEEccCCCCCcc-chhhhCCCCccEEEccCCcC
Q 040119 77 EELHLSGNNFFTL-PASIYRLSKLSKIFLKDCKM 109 (366)
Q Consensus 77 ~~L~Ls~N~~~~l-P~~i~~L~~L~~L~L~~n~~ 109 (366)
+.|++++|.++.+ |..+.++++|+.|++++|++
T Consensus 177 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp EEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 8888888877754 66777777777777777764
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.39 E-value=4.2e-13 Score=135.40 Aligned_cols=129 Identities=10% Similarity=0.084 Sum_probs=63.4
Q ss_pred CCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCC-CCCCCCEEEccCCCCCccchhhhCCCCccEEE
Q 040119 25 FPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIG-NLCSLEELHLSGNNFFTLPASIYRLSKLSKIF 103 (366)
Q Consensus 25 ~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~-~L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~L~ 103 (366)
++|+.|++++|.+.+..|..+..+++|+.|+|++|.+. +..|..+. .+++|+.|+|++|.|+.+|. +..+++|+.|+
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~ 197 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLD 197 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC-EEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEE
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC-CcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEE
Confidence 33444555555444444444444455555555555544 33344443 44455555555555544432 22344555555
Q ss_pred ccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119 104 LKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGSSITISTPPKTY 174 (366)
Q Consensus 104 L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~ 174 (366)
|++|++.+ +|+.+. ++++|+.|+++ .+.+. .+|.++.... ++..+++..|.+
T Consensus 198 Ls~N~l~~----~~~~~~-----~l~~L~~L~Ls-----~N~l~--~lp~~l~~l~---~L~~L~l~~N~l 249 (487)
T 3oja_A 198 LSSNKLAF----MGPEFQ-----SAAGVTWISLR-----NNKLV--LIEKALRFSQ---NLEHFDLRGNGF 249 (487)
T ss_dssp CCSSCCCE----ECGGGG-----GGTTCSEEECT-----TSCCC--EECTTCCCCT---TCCEEECTTCCB
T ss_pred CCCCCCCC----CCHhHc-----CCCCccEEEec-----CCcCc--ccchhhccCC---CCCEEEcCCCCC
Confidence 55554332 222222 45566666665 33333 2676666555 677777777766
No 79
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.39 E-value=3.2e-12 Score=110.80 Aligned_cols=123 Identities=20% Similarity=0.209 Sum_probs=93.3
Q ss_pred ccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccC
Q 040119 4 LKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSG 83 (366)
Q Consensus 4 L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~ 83 (366)
.+.++++++...... ......|+.|++++|.+.+..+..+..+++|+.|+|++|.+. +..+..++.+++|+.|+|++
T Consensus 9 ~~~l~~~~~~l~~~p--~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVP--TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCC--TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCC--CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECCC
Confidence 467888888744322 123367999999999998555556789999999999999997 44445678999999999999
Q ss_pred CCCCccchh-hhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119 84 NNFFTLPAS-IYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG 137 (366)
Q Consensus 84 N~~~~lP~~-i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~ 137 (366)
|.|+.+|.. +..+++|+.|++++|++.+ +|..+ +.++++|+.++++
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~----~~~~~----~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKS----VPDGI----FDRLTSLQKIWLH 132 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSC----CCTTT----TTTCTTCCEEECC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceE----eCHHH----hcCCcccCEEEec
Confidence 999988764 6889999999999998553 33322 1267778888877
No 80
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.39 E-value=8.1e-13 Score=127.89 Aligned_cols=107 Identities=17% Similarity=0.102 Sum_probs=67.6
Q ss_pred CccEEEeeCCCCCCCCC-CcC-CCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 3 NLKELSFRGCKGSPSSA-SWF-LPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 3 ~L~~L~Ls~n~~~~~~~-~~~-~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
.|+.|+|++|.+....+ .+. .+.+|+.|++++|.+....|..|..+++|+.|+|++|++. +..+..|..+++|+.|+
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCEEE
Confidence 46677777776443222 233 5566777777777776544555677777777777777775 33344566777777777
Q ss_pred ccCCCCCcc-chhhhCCCCccEEEccCCcCc
Q 040119 81 LSGNNFFTL-PASIYRLSKLSKIFLKDCKML 110 (366)
Q Consensus 81 Ls~N~~~~l-P~~i~~L~~L~~L~L~~n~~l 110 (366)
|++|.|+.+ |..+.++++|+.|+|++|++.
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence 777777755 456667777777777777643
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.38 E-value=5.6e-13 Score=126.06 Aligned_cols=156 Identities=11% Similarity=0.038 Sum_probs=103.3
Q ss_pred CCCccEEEeeCCCCCCCCCC-----cCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCC--C--CccCC
Q 040119 1 MKNLKELSFRGCKGSPSSAS-----WFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGA--I--PSGIG 71 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~-----~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~--l--P~~i~ 71 (366)
+++|++|+|++|......+. ...+++|+.|++++|.+.+..|..+..+++|+.|+|++|++. +. + +..++
T Consensus 116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~~ 194 (310)
T 4glp_A 116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGL-GERGLMAALCPH 194 (310)
T ss_dssp CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTC-HHHHHHTTSCTT
T ss_pred CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCc-cchhhhHHHhhh
Confidence 46788888888875543221 123567888888888887666677788888888888888865 32 2 23346
Q ss_pred CCCCCCEEEccCCCCCccch----hhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccC
Q 040119 72 NLCSLEELHLSGNNFFTLPA----SIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVP 147 (366)
Q Consensus 72 ~L~sL~~L~Ls~N~~~~lP~----~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~ 147 (366)
.+++|++|+|++|+++.+|. .+.++++|++|+|++|++.+.+|.-...+. .+++|+.|+++ .+.+.
T Consensus 195 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-----~~~~L~~L~Ls-----~N~l~ 264 (310)
T 4glp_A 195 KFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM-----WSSALNSLNLS-----FAGLE 264 (310)
T ss_dssp SSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC-----CCTTCCCEECC-----SSCCC
T ss_pred cCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc-----CcCcCCEEECC-----CCCCC
Confidence 77888888888888876664 246778888888888886654332221111 23577777766 33443
Q ss_pred CCCCCcccccCCCCCceEEEECCCCCC
Q 040119 148 GSEIPEWFEYQNNEGSSITISTPPKTY 174 (366)
Q Consensus 148 g~~iP~~f~~~~~~g~~~~l~L~~n~~ 174 (366)
.||.++. . ++..++|+.|.+
T Consensus 265 --~lp~~~~--~---~L~~L~Ls~N~l 284 (310)
T 4glp_A 265 --QVPKGLP--A---KLRVLDLSSNRL 284 (310)
T ss_dssp --SCCSCCC--S---CCSCEECCSCCC
T ss_pred --chhhhhc--C---CCCEEECCCCcC
Confidence 4666653 3 567788888877
No 82
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.38 E-value=6.2e-12 Score=130.87 Aligned_cols=109 Identities=21% Similarity=0.189 Sum_probs=54.6
Q ss_pred CCccEEEeeCCCCCCCCC-CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 2 KNLKELSFRGCKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
++|++|+|++|......+ .+..+.+|++|++++|.+.+..|..+.++++|++|+|++|.+. +..|..++.+++|++|+
T Consensus 73 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~ 151 (680)
T 1ziw_A 73 PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS-STKLGTQVQLENLQELL 151 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS-CCCCCSSSCCTTCCEEE
T ss_pred cCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccc-ccCchhhcccccCCEEE
Confidence 445555555554322211 2344455555555555555333344555555555555555554 44455555555555555
Q ss_pred ccCCCCCccch-hh--hCCCCccEEEccCCcCcc
Q 040119 81 LSGNNFFTLPA-SI--YRLSKLSKIFLKDCKMLQ 111 (366)
Q Consensus 81 Ls~N~~~~lP~-~i--~~L~~L~~L~L~~n~~l~ 111 (366)
|++|.++.++. .+ ..+++|+.|++++|++.+
T Consensus 152 L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 185 (680)
T 1ziw_A 152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185 (680)
T ss_dssp CCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred ccCCcccccCHHHhhccccccccEEECCCCcccc
Confidence 55555554432 22 234555555555555443
No 83
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.38 E-value=2.3e-12 Score=138.18 Aligned_cols=111 Identities=21% Similarity=0.300 Sum_probs=84.5
Q ss_pred CCCccEEEeeCCCCC--CCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCcc--CCCCCCC
Q 040119 1 MKNLKELSFRGCKGS--PSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSG--IGNLCSL 76 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~--~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~--i~~L~sL 76 (366)
|++|++|+|++|... .+...+..+.+|+.|++++|.+.+..|..|.++++|+.|+|++|.+. +.+|.. ++.+++|
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~L~~L 125 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLS-DAVLKDGYFRNLKAL 125 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCS-SCCSTTCCCSSCSSC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCC-cccccCccccccCCC
Confidence 456777777777422 22334556677888888888888777888888888888888888887 656655 8888889
Q ss_pred CEEEccCCCCCcc--chhhhCCCCccEEEccCCcCccC
Q 040119 77 EELHLSGNNFFTL--PASIYRLSKLSKIFLKDCKMLQN 112 (366)
Q Consensus 77 ~~L~Ls~N~~~~l--P~~i~~L~~L~~L~L~~n~~l~~ 112 (366)
++|+|++|.++.+ +..++++++|+.|+|++|.+.+.
T Consensus 126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred CEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 9999998888855 35788888899888888876543
No 84
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.38 E-value=7e-13 Score=134.66 Aligned_cols=163 Identities=19% Similarity=0.128 Sum_probs=75.1
Q ss_pred CCCccEEEeeCCCCCCCC---CCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCC-ccCCCCCCC
Q 040119 1 MKNLKELSFRGCKGSPSS---ASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIP-SGIGNLCSL 76 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~---~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP-~~i~~L~sL 76 (366)
+++|+.|+|++|...... .....+++|+.|++++|.+. .+|..+..+++|+.|+|++|.+. +..| ..+..+++|
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L 423 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNL 423 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEE-SCTTSCTTTTCTTC
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-cccccccccCCCCEEEccCCccc-cccchhhhhcCCCC
Confidence 355666666666533211 11223344555555555554 23333445555555555555544 2222 234455555
Q ss_pred CEEEccCCCCCc-cchhhhCCCCccEEEccCCcCc-cCCCCC---Ccccceeccc-------------CCcCccEeeCCC
Q 040119 77 EELHLSGNNFFT-LPASIYRLSKLSKIFLKDCKML-QNLPRL---PASIHGIFLD-------------GCVSLETLSDGY 138 (366)
Q Consensus 77 ~~L~Ls~N~~~~-lP~~i~~L~~L~~L~L~~n~~l-~~lp~l---p~~L~~L~~~-------------~c~sL~~l~~~~ 138 (366)
+.|+|++|.+.. .|..+.++++|+.|++++|++. +.+|.. .++|+.|+++ ++++|+.|+++
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~- 502 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA- 502 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC-
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC-
Confidence 555555555442 3344445555555555555433 222211 1122222222 34555555554
Q ss_pred CCCcccccCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119 139 WRDCSIVVPGSEIPEWFEYQNNEGSSITISTPPKTY 174 (366)
Q Consensus 139 f~~~~~~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~ 174 (366)
.+.+.+ ..|..|.... ++..+++..|.+
T Consensus 503 ----~n~l~~-~~~~~~~~l~---~L~~L~l~~N~~ 530 (570)
T 2z63_A 503 ----SNQLKS-VPDGIFDRLT---SLQKIWLHTNPW 530 (570)
T ss_dssp ----SSCCSC-CCTTTTTTCT---TCCEEECCSSCB
T ss_pred ----CCcCCC-CCHHHhhccc---CCcEEEecCCcc
Confidence 223332 2344555544 667777777776
No 85
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.38 E-value=3.7e-12 Score=130.08 Aligned_cols=162 Identities=19% Similarity=0.130 Sum_probs=118.7
Q ss_pred CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCC-CCCCccCCCCCCCCEEE
Q 040119 2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGE-GAIPSGIGNLCSLEELH 80 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~-~~lP~~i~~L~sL~~L~ 80 (366)
.+|+.|++++|.... ......+++|+.|++++|.+.+.+|..+..+++|+.|+|++|++.. ..+|..++.+++|+.|+
T Consensus 331 ~~L~~L~l~~n~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 409 (562)
T 3a79_B 331 MNIKMLSISDTPFIH-MVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409 (562)
T ss_dssp CCCSEEEEESSCCCC-CCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEE
T ss_pred CcceEEEccCCCccc-ccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEE
Confidence 358888998887432 2222456789999999999998889999999999999999999962 02346789999999999
Q ss_pred ccCCCCCc-cchh-hhCCCCccEEEccCCcCccCCCC-CCcccceecccCC------------cCccEeeCCCCCCcccc
Q 040119 81 LSGNNFFT-LPAS-IYRLSKLSKIFLKDCKMLQNLPR-LPASIHGIFLDGC------------VSLETLSDGYWRDCSIV 145 (366)
Q Consensus 81 Ls~N~~~~-lP~~-i~~L~~L~~L~L~~n~~l~~lp~-lp~~L~~L~~~~c------------~sL~~l~~~~f~~~~~~ 145 (366)
|++|.++. +|.. +..+++|+.|++++|++.+.+|. +|+.|+.|+++++ ++|+.|+++ .+.
T Consensus 410 l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~-----~N~ 484 (562)
T 3a79_B 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVA-----SNQ 484 (562)
T ss_dssp CTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECC-----SSC
T ss_pred CCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECC-----CCC
Confidence 99999996 8864 77889999999999998766654 3467777776655 233333333 233
Q ss_pred cCCCCCCcc-cccCCCCCceEEEECCCCCC
Q 040119 146 VPGSEIPEW-FEYQNNEGSSITISTPPKTY 174 (366)
Q Consensus 146 l~g~~iP~~-f~~~~~~g~~~~l~L~~n~~ 174 (366)
+. .+|.. |.... ++..+++..|.+
T Consensus 485 l~--~l~~~~~~~l~---~L~~L~l~~N~~ 509 (562)
T 3a79_B 485 LK--SVPDGVFDRLT---SLQYIWLHDNPW 509 (562)
T ss_dssp CC--CCCTTSTTTCT---TCCCEECCSCCB
T ss_pred CC--CCCHHHHhcCC---CCCEEEecCCCc
Confidence 32 46665 55444 677778887776
No 86
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.37 E-value=2.8e-12 Score=133.53 Aligned_cols=126 Identities=14% Similarity=0.108 Sum_probs=97.3
Q ss_pred CCccEEEeeCCCCCCCCC-CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCc-cCCCCCCCCEE
Q 040119 2 KNLKELSFRGCKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPS-GIGNLCSLEEL 79 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~-~i~~L~sL~~L 79 (366)
++|++|+|++|......+ .+..++.|+.|++++|.+.+..|..+.++++|+.|+|++|.+.. +|. .|+.+++|++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ--LSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC--CCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc--cChhhhccCCCCCEE
Confidence 478899999998554333 35667789999999999987778888899999999999999863 665 68999999999
Q ss_pred EccCCCCCccc-hhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119 80 HLSGNNFFTLP-ASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG 137 (366)
Q Consensus 80 ~Ls~N~~~~lP-~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~ 137 (366)
+|++|.++.+| ..++++++|++|++++|++.+..|. .+. ++++|+.|+++
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~-----~l~~L~~L~L~ 153 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG---TQV-----QLENLQELLLS 153 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC---SSS-----CCTTCCEEECC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCch---hhc-----ccccCCEEEcc
Confidence 99999998776 5788999999999999987654332 222 45555555554
No 87
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.37 E-value=1e-11 Score=124.27 Aligned_cols=101 Identities=16% Similarity=0.117 Sum_probs=74.6
Q ss_pred CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
|++|++|+|++|.+... +....+++|+.|++++|.+.+ +| +..+++|+.|+|++|.+.. +| ++.+++|++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~--~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-TGIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN--LD--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCCCC-TTGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC--CC--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcccC-hhhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce--ee--cCCCCcCCEEE
Confidence 36788888888875543 345566778888888888874 44 7778888888888888863 44 77788888888
Q ss_pred ccCCCCCccchhhhCCCCccEEEccCCcCcc
Q 040119 81 LSGNNFFTLPASIYRLSKLSKIFLKDCKMLQ 111 (366)
Q Consensus 81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~ 111 (366)
|++|.++.+| ++.+++|+.|++++|++.+
T Consensus 113 L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~ 141 (457)
T 3bz5_A 113 CDTNKLTKLD--VSQNPLLTYLNCARNTLTE 141 (457)
T ss_dssp CCSSCCSCCC--CTTCTTCCEEECTTSCCSC
T ss_pred CCCCcCCeec--CCCCCcCCEEECCCCccce
Confidence 8888888776 7777888888888877554
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.37 E-value=6.5e-12 Score=118.95 Aligned_cols=146 Identities=16% Similarity=0.272 Sum_probs=118.7
Q ss_pred CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
+++|+.|+|++|......+ ...+++|+.|++++|.+. .+| .+..+++|+.|+|++|.+.. +|. +..+++|+.|+
T Consensus 62 l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~ 135 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITD--VTP-LAGLSNLQVLY 135 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCCC--CGG-GTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCC-Cch-hhcCCCCCCEEECCCCCCCC--chh-hcCCCCCCEEE
Confidence 5789999999998655444 677788999999999997 565 59999999999999999973 654 89999999999
Q ss_pred ccCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCCC
Q 040119 81 LSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNN 160 (366)
Q Consensus 81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~ 160 (366)
|++|.++.+|. +..+++|+.|++++|++.. +++ + .++++|+.|+++ .+.+. .+|. +....
T Consensus 136 l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~----~~~-l-----~~l~~L~~L~l~-----~n~l~--~~~~-l~~l~- 195 (308)
T 1h6u_A 136 LDLNQITNISP-LAGLTNLQYLSIGNAQVSD----LTP-L-----ANLSKLTTLKAD-----DNKIS--DISP-LASLP- 195 (308)
T ss_dssp CCSSCCCCCGG-GGGCTTCCEEECCSSCCCC----CGG-G-----TTCTTCCEEECC-----SSCCC--CCGG-GGGCT-
T ss_pred CCCCccCcCcc-ccCCCCccEEEccCCcCCC----Chh-h-----cCCCCCCEEECC-----CCccC--cChh-hcCCC-
Confidence 99999998886 8999999999999998543 333 3 378899999887 34443 3554 54444
Q ss_pred CCceEEEECCCCCC
Q 040119 161 EGSSITISTPPKTY 174 (366)
Q Consensus 161 ~g~~~~l~L~~n~~ 174 (366)
++..++|..|.+
T Consensus 196 --~L~~L~L~~N~l 207 (308)
T 1h6u_A 196 --NLIEVHLKNNQI 207 (308)
T ss_dssp --TCCEEECTTSCC
T ss_pred --CCCEEEccCCcc
Confidence 788999999988
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.37 E-value=3.5e-12 Score=119.90 Aligned_cols=102 Identities=13% Similarity=0.208 Sum_probs=74.0
Q ss_pred CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEc
Q 040119 2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHL 81 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~L 81 (366)
++|+.|++++|..... +....+++|+.|++++|.+. .++. +..+++|+.|+|++|.+.. +| .++.+++|+.|+|
T Consensus 46 ~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVKD--LS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC--GG-GGTTCTTCCEEEC
T ss_pred CcccEEEccCCCcccC-hhHhcCCCCCEEEccCCccC-CCcc-cccCCCCCEEECCCCcCCC--Ch-hhccCCCCCEEEC
Confidence 5678888888774433 33455677888888888886 4555 7788888888888888763 44 3777888888888
Q ss_pred cCCCCCccchhhhCCCCccEEEccCCcCc
Q 040119 82 SGNNFFTLPASIYRLSKLSKIFLKDCKML 110 (366)
Q Consensus 82 s~N~~~~lP~~i~~L~~L~~L~L~~n~~l 110 (366)
++|.++.++ .+..+++|+.|++++|++.
T Consensus 120 ~~n~i~~~~-~l~~l~~L~~L~l~~n~l~ 147 (291)
T 1h6t_A 120 EHNGISDIN-GLVHLPQLESLYLGNNKIT 147 (291)
T ss_dssp TTSCCCCCG-GGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCCCh-hhcCCCCCCEEEccCCcCC
Confidence 888887764 5777888888888888754
No 90
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.36 E-value=5.2e-12 Score=117.07 Aligned_cols=145 Identities=14% Similarity=0.130 Sum_probs=112.9
Q ss_pred CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
|++|+.|++++|..... +....+++|+.|++++|.+. .+|. +..+++|+.|+|++|++.. +|.... ++|+.|+
T Consensus 40 l~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~L~~N~l~~--l~~~~~--~~L~~L~ 112 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKN--LNGIPS--ACLSRLF 112 (263)
T ss_dssp HTTCSEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEECCSSCCSC--CTTCCC--SSCCEEE
T ss_pred cCcCcEEECcCCCcccc-hHHhhCCCCCEEECCCCccC-CChh-hccCCCCCEEECCCCccCC--cCcccc--CcccEEE
Confidence 47899999999985533 35566788999999999998 5666 9999999999999999974 765444 8999999
Q ss_pred ccCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCCC
Q 040119 81 LSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNN 160 (366)
Q Consensus 81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~ 160 (366)
|++|.++.+| .+..+++|+.|+|++|++.+ + | .+ .++++|+.|+++ .+.+.+ + ..+....
T Consensus 113 L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~-~---~-~l-----~~l~~L~~L~L~-----~N~i~~--~-~~l~~l~- 172 (263)
T 1xeu_A 113 LDNNELRDTD-SLIHLKNLEILSIRNNKLKS-I---V-ML-----GFLSKLEVLDLH-----GNEITN--T-GGLTRLK- 172 (263)
T ss_dssp CCSSCCSBSG-GGTTCTTCCEEECTTSCCCB-C---G-GG-----GGCTTCCEEECT-----TSCCCB--C-TTSTTCC-
T ss_pred ccCCccCCCh-hhcCcccccEEECCCCcCCC-C---h-HH-----ccCCCCCEEECC-----CCcCcc--h-HHhccCC-
Confidence 9999999987 59999999999999999553 2 2 23 377888888887 334433 2 3444444
Q ss_pred CCceEEEECCCCCC
Q 040119 161 EGSSITISTPPKTY 174 (366)
Q Consensus 161 ~g~~~~l~L~~n~~ 174 (366)
++..+++..|.+
T Consensus 173 --~L~~L~l~~N~~ 184 (263)
T 1xeu_A 173 --KVNWIDLTGQKC 184 (263)
T ss_dssp --CCCEEEEEEEEE
T ss_pred --CCCEEeCCCCcc
Confidence 677888888776
No 91
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.36 E-value=3.3e-12 Score=127.49 Aligned_cols=108 Identities=16% Similarity=0.183 Sum_probs=87.5
Q ss_pred CCccEEEeeCCCCCCC-CCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCC-ccCCCCCCCCEE
Q 040119 2 KNLKELSFRGCKGSPS-SASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIP-SGIGNLCSLEEL 79 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~-~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP-~~i~~L~sL~~L 79 (366)
++|+.|+|++|.+... ...+..+++|+.|++++|.+.+..|..|.++++|+.|+|++|.+.. +| ..|..+++|+.|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL--IPLGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS--CCTTSSTTCTTCCEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc--cCcccccCCCCCCEE
Confidence 4688999999885543 3455667889999999999887778888999999999999999863 55 457889999999
Q ss_pred EccCCCCCcc-chhhhCCCCccEEEccCCcCcc
Q 040119 80 HLSGNNFFTL-PASIYRLSKLSKIFLKDCKMLQ 111 (366)
Q Consensus 80 ~Ls~N~~~~l-P~~i~~L~~L~~L~L~~n~~l~ 111 (366)
+|++|.+..+ |..+.++++|+.|+|++|++.+
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 142 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVY 142 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccce
Confidence 9999999855 5678889999999999988654
No 92
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.36 E-value=4.9e-13 Score=141.36 Aligned_cols=110 Identities=23% Similarity=0.229 Sum_probs=91.1
Q ss_pred CCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccchhhhC
Q 040119 16 PSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYR 95 (366)
Q Consensus 16 ~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~~i~~ 95 (366)
.+...+..+..|+.|+|++|.+. .+|..+..+++|+.|+|++|.|+. +|..|+.|++|+.|+|++|.|+.+|..|++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTE--LPAEIKNLSNLRVLDLSHNRLTSLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSC--CCGGGGGGTTCCEEECTTSCCSSCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcc--cChhhhCCCCCCEEeCcCCcCCccChhhcC
Confidence 34444556678999999999998 899889999999999999999964 999999999999999999999999999999
Q ss_pred CCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119 96 LSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG 137 (366)
Q Consensus 96 L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~ 137 (366)
|++|++|+|++|.+. .+|..+. ++++|+.|+++
T Consensus 292 l~~L~~L~L~~N~l~----~lp~~~~-----~l~~L~~L~L~ 324 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT----TLPWEFG-----NLCNLQFLGVE 324 (727)
T ss_dssp GTTCSEEECCSSCCC----CCCSSTT-----SCTTCCCEECT
T ss_pred CCCCCEEECCCCCCC----ccChhhh-----cCCCccEEeCC
Confidence 999999999999853 4444454 66777777776
No 93
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.36 E-value=5.6e-12 Score=111.22 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=96.7
Q ss_pred CCccEEEeeCCCCCCCCC--CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119 2 KNLKELSFRGCKGSPSSA--SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL 79 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~--~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L 79 (366)
++|+.|+|++|.+....+ .+..+++|+.|++++|.+.+..|..|..+++|+.|+|++|++. +..|..|..+++|+.|
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTL 107 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC-EECSSSSTTCTTCCEE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCC-ccCHHHhcCCCCCCEE
Confidence 378999999999655444 3567788999999999999888999999999999999999998 6667779999999999
Q ss_pred EccCCCCCcc-chhhhCCCCccEEEccCCcCccC
Q 040119 80 HLSGNNFFTL-PASIYRLSKLSKIFLKDCKMLQN 112 (366)
Q Consensus 80 ~Ls~N~~~~l-P~~i~~L~~L~~L~L~~n~~l~~ 112 (366)
+|++|+|+.+ |..+..+++|+.|+|++|++...
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 9999999955 77899999999999999997754
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.36 E-value=8.4e-12 Score=117.31 Aligned_cols=146 Identities=18% Similarity=0.244 Sum_probs=115.9
Q ss_pred CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
+++|+.|+|++|......+ ...+++|+.|++++|.+. .+|. +..+++|+.|+|++|.+.. + ..+..+++|+.|+
T Consensus 67 l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~L~~n~i~~--~-~~l~~l~~L~~L~ 140 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLY 140 (291)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CGGG-GTTCTTCCEEECTTSCCCC--C-GGGGGCTTCCEEE
T ss_pred CCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCC-CChh-hccCCCCCEEECCCCcCCC--C-hhhcCCCCCCEEE
Confidence 5789999999998665444 667788999999999997 4555 8999999999999999973 4 5788999999999
Q ss_pred ccCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCCC
Q 040119 81 LSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNN 160 (366)
Q Consensus 81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~ 160 (366)
|++|.++.+ ..+..+++|+.|++++|++.+ +++ + .++++|+.|+++ .+.+. .+|. +....
T Consensus 141 l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~----~~~-l-----~~l~~L~~L~L~-----~N~i~--~l~~-l~~l~- 200 (291)
T 1h6t_A 141 LGNNKITDI-TVLSRLTKLDTLSLEDNQISD----IVP-L-----AGLTKLQNLYLS-----KNHIS--DLRA-LAGLK- 200 (291)
T ss_dssp CCSSCCCCC-GGGGGCTTCSEEECCSSCCCC----CGG-G-----TTCTTCCEEECC-----SSCCC--BCGG-GTTCT-
T ss_pred ccCCcCCcc-hhhccCCCCCEEEccCCcccc----chh-h-----cCCCccCEEECC-----CCcCC--CChh-hccCC-
Confidence 999999988 479999999999999998553 322 3 378889999887 34333 3554 55444
Q ss_pred CCceEEEECCCCCC
Q 040119 161 EGSSITISTPPKTY 174 (366)
Q Consensus 161 ~g~~~~l~L~~n~~ 174 (366)
++..+++..|.+
T Consensus 201 --~L~~L~l~~n~i 212 (291)
T 1h6t_A 201 --NLDVLELFSQEC 212 (291)
T ss_dssp --TCSEEEEEEEEE
T ss_pred --CCCEEECcCCcc
Confidence 778888887766
No 95
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.35 E-value=4e-12 Score=136.24 Aligned_cols=110 Identities=16% Similarity=0.137 Sum_probs=94.2
Q ss_pred CCccEEEeeCCCCCC-CCCCcCCCCCccEEECcCCCCCCCC-CccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119 2 KNLKELSFRGCKGSP-SSASWFLPFPINLMRWSSDPMALSL-PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL 79 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~-~~~~~~~~~~L~~L~ls~n~l~~~l-P~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L 79 (366)
++|++|+|++|.+.. ....+..+.+|++|++++|...+.+ |..|.++++|++|+|++|.+. +..|..|+.+++|++|
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFEL 102 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC-EECTTSSCSCSSCCCE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc-ccCHhHccCCcccCEe
Confidence 689999999998554 3445677788999999999666566 788999999999999999998 6679999999999999
Q ss_pred EccCCCCCc-cchh--hhCCCCccEEEccCCcCccC
Q 040119 80 HLSGNNFFT-LPAS--IYRLSKLSKIFLKDCKMLQN 112 (366)
Q Consensus 80 ~Ls~N~~~~-lP~~--i~~L~~L~~L~L~~n~~l~~ 112 (366)
+|++|.++. +|.. +.++++|+.|+|++|++.+.
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~ 138 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCccccc
Confidence 999999984 5654 89999999999999997653
No 96
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.35 E-value=1e-12 Score=124.75 Aligned_cols=155 Identities=10% Similarity=0.037 Sum_probs=71.4
Q ss_pred CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
+++|++|+|++|.+.... ..+.|+.|++++|.+.+ ++. ..+++|+.|+|++|.+. +..|..++.+++|+.|+
T Consensus 79 l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~~n~l~~-~~~--~~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~ 150 (317)
T 3o53_A 79 LSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISR-VSC--SRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLD 150 (317)
T ss_dssp CTTCCEEECCSSEEEEEE----ECTTCCEEECCSSCCSE-EEE--CCCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEE
T ss_pred cCCCCEEECcCCcccccc----CCCCcCEEECCCCccCC-cCc--cccCCCCEEECCCCCCC-CccchhhhccCCCCEEE
Confidence 356666666666532110 11344555555555442 221 12344455555555544 22233444444555555
Q ss_pred ccCCCCCcc-chhh-hCCCCccEEEccCCcCccCCCCC--Ccccceeccc------------CCcCccEeeCCCCCCccc
Q 040119 81 LSGNNFFTL-PASI-YRLSKLSKIFLKDCKMLQNLPRL--PASIHGIFLD------------GCVSLETLSDGYWRDCSI 144 (366)
Q Consensus 81 Ls~N~~~~l-P~~i-~~L~~L~~L~L~~n~~l~~lp~l--p~~L~~L~~~------------~c~sL~~l~~~~f~~~~~ 144 (366)
|++|.++.+ |..+ ..+++|+.|+|++|++.. +|.. .++|+.|+++ ++++|+.|+++ .+
T Consensus 151 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~-----~N 224 (317)
T 3o53_A 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR-----NN 224 (317)
T ss_dssp CTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECT-----TS
T ss_pred CCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-cccccccccCCEEECCCCcCCcchhhhcccCcccEEECc-----CC
Confidence 555544433 2222 234445555554444322 1111 1222222222 44566666655 33
Q ss_pred ccCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119 145 VVPGSEIPEWFEYQNNEGSSITISTPPKTY 174 (366)
Q Consensus 145 ~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~ 174 (366)
.+. .+|.++.... ++..+++..|.+
T Consensus 225 ~l~--~l~~~~~~l~---~L~~L~l~~N~~ 249 (317)
T 3o53_A 225 KLV--LIEKALRFSQ---NLEHFDLRGNGF 249 (317)
T ss_dssp CCC--EECTTCCCCT---TCCEEECTTCCC
T ss_pred ccc--chhhHhhcCC---CCCEEEccCCCc
Confidence 332 3666665554 677778777776
No 97
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.34 E-value=5.8e-12 Score=126.04 Aligned_cols=153 Identities=18% Similarity=0.069 Sum_probs=100.4
Q ss_pred CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
+++|+.|+|++|..... + ...++.|+.|++++|.+.+ ++ +..+++|+.|+|++|++. + +| ++.+++|+.|+
T Consensus 169 l~~L~~L~ls~n~l~~l-~-l~~l~~L~~L~l~~N~l~~-~~--l~~l~~L~~L~Ls~N~l~-~-ip--~~~l~~L~~L~ 239 (457)
T 3bz5_A 169 QTQLTTLDCSFNKITEL-D-VSQNKLLNRLNCDTNNITK-LD--LNQNIQLTFLDCSSNKLT-E-ID--VTPLTQLTYFD 239 (457)
T ss_dssp CTTCCEEECCSSCCCCC-C-CTTCTTCCEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS-C-CC--CTTCTTCSEEE
T ss_pred CCcCCEEECCCCcccee-c-cccCCCCCEEECcCCcCCe-ec--cccCCCCCEEECcCCccc-c-cC--ccccCCCCEEE
Confidence 46788888888875542 2 4556678888888888874 32 777888888888888886 3 66 77788888888
Q ss_pred ccCCCCCccch-hhh-----------------------------CCCCccEEEccCCcCccCCCCCCcccceecccCCcC
Q 040119 81 LSGNNFFTLPA-SIY-----------------------------RLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVS 130 (366)
Q Consensus 81 Ls~N~~~~lP~-~i~-----------------------------~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~s 130 (366)
+++|.++.+|. .+. .+++|+.|++++|+.++.+|.-...++.|++++|++
T Consensus 240 l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~ 319 (457)
T 3bz5_A 240 CSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPK 319 (457)
T ss_dssp CCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred eeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhccc
Confidence 88888776552 222 234445555555555554444444556666666666
Q ss_pred ccEeeCCCCCCcccccCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119 131 LETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGSSITISTPPKTY 174 (366)
Q Consensus 131 L~~l~~~~f~~~~~~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~ 174 (366)
|+.++++ .+.+.| +| +.... .+..+++..|.+
T Consensus 320 L~~L~L~-----~N~l~~--l~--l~~l~---~L~~L~l~~N~l 351 (457)
T 3bz5_A 320 LVYLYLN-----NTELTE--LD--VSHNT---KLKSLSCVNAHI 351 (457)
T ss_dssp CCEEECT-----TCCCSC--CC--CTTCT---TCSEEECCSSCC
T ss_pred CCEEECC-----CCcccc--cc--cccCC---cCcEEECCCCCC
Confidence 6666665 444444 33 44444 678888888887
No 98
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.34 E-value=4e-12 Score=123.02 Aligned_cols=109 Identities=19% Similarity=0.158 Sum_probs=93.9
Q ss_pred CCCccEEEeeCCCCCCCC-CCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119 1 MKNLKELSFRGCKGSPSS-ASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL 79 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~-~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L 79 (366)
|++|+.|+|++|.+.... ..+..+++|+.|++++|.+....+..|..+++|+.|+|++|.+. +..|..|..+++|+.|
T Consensus 63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKL 141 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEE
T ss_pred ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCccc-EECHHHhCCcccCCEE
Confidence 578999999999965433 34667788999999999998666667899999999999999998 5668899999999999
Q ss_pred EccCCCCCccchhh----hCCCCccEEEccCCcCc
Q 040119 80 HLSGNNFFTLPASI----YRLSKLSKIFLKDCKML 110 (366)
Q Consensus 80 ~Ls~N~~~~lP~~i----~~L~~L~~L~L~~n~~l 110 (366)
+|++|.|+.+|..+ ..+++|+.|+|++|++.
T Consensus 142 ~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 142 YLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp ECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred ECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 99999999999765 57999999999999855
No 99
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.34 E-value=8e-12 Score=108.22 Aligned_cols=105 Identities=18% Similarity=0.228 Sum_probs=81.1
Q ss_pred ccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccC
Q 040119 4 LKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSG 83 (366)
Q Consensus 4 L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~ 83 (366)
.+.|++++|.+.... . .....|+.|++++|.+.+..|..|..+++|+.|+|++|+|. +..|..|..+++|+.|+|++
T Consensus 11 ~~~l~~s~n~l~~ip-~-~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVP-T-GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCC-S-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccC-c-cCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECCC
Confidence 467888888744322 1 12366888999999988666778888999999999999987 44444568889999999999
Q ss_pred CCCCccch-hhhCCCCccEEEccCCcCcc
Q 040119 84 NNFFTLPA-SIYRLSKLSKIFLKDCKMLQ 111 (366)
Q Consensus 84 N~~~~lP~-~i~~L~~L~~L~L~~n~~l~ 111 (366)
|+|+.+|. .+.++++|+.|+|++|++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 99988876 47888899999999988553
No 100
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.34 E-value=2.4e-11 Score=126.17 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=17.3
Q ss_pred CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCC
Q 040119 2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMA 38 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~ 38 (366)
++|++|+|++|++... +. .+++|+.|++++|.+.
T Consensus 81 ~~L~~L~Ls~N~l~~l-p~--~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 81 PELRTLEVSGNQLTSL-PV--LPPGLLELSIFSNPLT 114 (622)
T ss_dssp TTCCEEEECSCCCSCC-CC--CCTTCCEEEECSCCCC
T ss_pred CCCCEEEcCCCcCCcC-CC--CCCCCCEEECcCCcCC
Confidence 4566666666653321 11 3344555555555554
No 101
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.33 E-value=3.3e-11 Score=120.43 Aligned_cols=114 Identities=25% Similarity=0.334 Sum_probs=86.6
Q ss_pred CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEcc
Q 040119 3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLS 82 (366)
Q Consensus 3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls 82 (366)
+|++|++++|...... ....+|+.|++++|.+. .+| .+.++++|+.|+|++|++.. +|..+ .+|++|+++
T Consensus 112 ~L~~L~l~~n~l~~l~---~~~~~L~~L~L~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~--lp~~~---~~L~~L~L~ 181 (454)
T 1jl5_A 112 SLKSLLVDNNNLKALS---DLPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLKK--LPDLP---PSLEFIAAG 181 (454)
T ss_dssp TCCEEECCSSCCSCCC---SCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSC--CCCCC---TTCCEEECC
T ss_pred CCcEEECCCCccCccc---CCCCCCCEEECcCCCCC-CCc-ccCCCCCCCEEECCCCcCcc--cCCCc---ccccEEECc
Confidence 4555555555433211 11256888888888887 478 48899999999999998863 77654 488999999
Q ss_pred CCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCC
Q 040119 83 GNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGC 128 (366)
Q Consensus 83 ~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c 128 (366)
+|.++.+| .+.++++|+.|++++|++.+ +|..|.+++.|+++++
T Consensus 182 ~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~n 225 (454)
T 1jl5_A 182 NNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGNN 225 (454)
T ss_dssp SSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCCCTTCCEEECCSS
T ss_pred CCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCCcCcccEEECcCC
Confidence 99999888 68999999999999998664 8888888888887665
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.33 E-value=3e-11 Score=124.28 Aligned_cols=147 Identities=20% Similarity=0.241 Sum_probs=114.1
Q ss_pred CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEc
Q 040119 2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHL 81 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~L 81 (366)
++|+.|+|++|.+. ..+ ..+++|+.|++++|.+.+ +|. +.. +|+.|+|++|+++ + +|. .+++|+.|+|
T Consensus 80 ~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~-~-lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLT-M-LPE---LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCS-C-CCC---CCTTCCEEEC
T ss_pred CCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCC-C-CCC---cCccccEEeC
Confidence 57999999999866 333 456889999999999985 888 665 9999999999997 3 887 6899999999
Q ss_pred cCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCc---------Cc-------cEeeCCCCCCcccc
Q 040119 82 SGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCV---------SL-------ETLSDGYWRDCSIV 145 (366)
Q Consensus 82 s~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~---------sL-------~~l~~~~f~~~~~~ 145 (366)
++|.|+.+|. .+++|+.|+|++|++.+ +|.++.+|+.|+++++. +| +.|+++ .+.
T Consensus 148 s~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~l~~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls-----~N~ 218 (571)
T 3cvr_A 148 DNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCR-----ENR 218 (571)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCC--------CCEEEECC-----SSC
T ss_pred CCCccCcCCC---cCCCcCEEECCCCCCCC-cchhhCCCCEEECcCCCCCchhhHHHhhhcccccceEEecC-----CCc
Confidence 9999999997 67899999999999665 77777778888876652 22 333333 222
Q ss_pred cCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119 146 VPGSEIPEWFEYQNNEGSSITISTPPKTY 174 (366)
Q Consensus 146 l~g~~iP~~f~~~~~~g~~~~l~L~~n~~ 174 (366)
+. .||.++.... ++..++|..|.+
T Consensus 219 l~--~lp~~l~~l~---~L~~L~L~~N~l 242 (571)
T 3cvr_A 219 IT--HIPENILSLD---PTCTIILEDNPL 242 (571)
T ss_dssp CC--CCCGGGGGSC---TTEEEECCSSSC
T ss_pred ce--ecCHHHhcCC---CCCEEEeeCCcC
Confidence 22 5777776655 677788887777
No 103
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.33 E-value=1.6e-11 Score=108.64 Aligned_cols=124 Identities=21% Similarity=0.273 Sum_probs=72.0
Q ss_pred cEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccc-hhhhCCCCccEEEccC
Q 040119 28 NLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLP-ASIYRLSKLSKIFLKD 106 (366)
Q Consensus 28 ~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP-~~i~~L~~L~~L~L~~ 106 (366)
+.+++++|.+. .+|..+. ++|+.|+|++|.+.. +|..|..+++|+.|+|++|.|+.++ ..+.++++|+.|+|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 45666666665 5665442 467777777777743 6666777777777777777777654 3566677777777777
Q ss_pred CcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCc-ccccCCCCCceEEEECCCCCC
Q 040119 107 CKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPE-WFEYQNNEGSSITISTPPKTY 174 (366)
Q Consensus 107 n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~-~f~~~~~~g~~~~l~L~~n~~ 174 (366)
|++....| ..+. ++++|+.|+++ .+.+. .+|. .|.... ++..++|..|.+
T Consensus 88 N~l~~i~~---~~f~-----~l~~L~~L~L~-----~N~l~--~~~~~~~~~l~---~L~~L~L~~N~~ 138 (193)
T 2wfh_A 88 NRLRCIPP---RTFD-----GLKSLRLLSLH-----GNDIS--VVPEGAFNDLS---ALSHLAIGANPL 138 (193)
T ss_dssp SCCCBCCT---TTTT-----TCTTCCEEECC-----SSCCC--BCCTTTTTTCT---TCCEEECCSSCE
T ss_pred CccCEeCH---HHhC-----CCCCCCEEECC-----CCCCC--eeChhhhhcCc---cccEEEeCCCCe
Confidence 76443211 1222 55566666655 33332 2333 344444 556666666654
No 104
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.32 E-value=1e-11 Score=126.77 Aligned_cols=102 Identities=15% Similarity=0.035 Sum_probs=70.1
Q ss_pred ccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccC
Q 040119 4 LKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSG 83 (366)
Q Consensus 4 L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~ 83 (366)
.++|++++|.... .|.. ..++|+.|++++|.+.+..|..+.++++|+.|+|++|.+. +..|..|+.+++|++|+|++
T Consensus 33 ~~~l~ls~~~L~~-ip~~-~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPKD-LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CCEEECTTSCCCS-CCTT-SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECTT
T ss_pred CcEEEcCCCCCcc-CCCC-CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCCEEECCC
Confidence 3567777776443 2211 1256777777777777555567777777777777777776 45567777777777777777
Q ss_pred CCCCccchhhhCCCCccEEEccCCcCc
Q 040119 84 NNFFTLPASIYRLSKLSKIFLKDCKML 110 (366)
Q Consensus 84 N~~~~lP~~i~~L~~L~~L~L~~n~~l 110 (366)
|.++.+|.. .+++|++|+|++|++.
T Consensus 110 N~l~~lp~~--~l~~L~~L~Ls~N~l~ 134 (562)
T 3a79_B 110 NRLQNISCC--PMASLRHLDLSFNDFD 134 (562)
T ss_dssp SCCCEECSC--CCTTCSEEECCSSCCS
T ss_pred CcCCccCcc--ccccCCEEECCCCCcc
Confidence 777777765 6777777777777754
No 105
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=1.3e-11 Score=107.39 Aligned_cols=102 Identities=18% Similarity=0.270 Sum_probs=70.7
Q ss_pred cEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCc-cCCCCCCCCEEEccC
Q 040119 5 KELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPS-GIGNLCSLEELHLSG 83 (366)
Q Consensus 5 ~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~-~i~~L~sL~~L~Ls~ 83 (366)
+.+++++|.+... +.. ....|+.|++++|.+.+..|..|.++++|+.|+|++|+|.. +|. .|..+++|+.|+|++
T Consensus 15 ~~l~~~~n~l~~i-P~~-~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASV-PAG-IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA--IPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSC-CSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCcc-CCC-cCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc--cChhHhCCcchhhEEECCC
Confidence 5677777764322 111 12567788888888776666777778888888888888762 544 357778888888888
Q ss_pred CCCCccchh-hhCCCCccEEEccCCcCc
Q 040119 84 NNFFTLPAS-IYRLSKLSKIFLKDCKML 110 (366)
Q Consensus 84 N~~~~lP~~-i~~L~~L~~L~L~~n~~l 110 (366)
|+|+.+|.. +..+++|+.|+|++|++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 888877754 777788888888887744
No 106
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.31 E-value=3.3e-11 Score=114.98 Aligned_cols=118 Identities=20% Similarity=0.301 Sum_probs=91.6
Q ss_pred CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
+++|++|++++|..... +....+++|+.|++++|.+. .+|. +..+++|+.|+|++|.+.. +| .+..+++|++|+
T Consensus 43 l~~L~~L~l~~~~i~~~-~~~~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~~--~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 43 LESITKLVVAGEKVASI-QGIEYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITD--IS-ALQNLTNLRELY 116 (347)
T ss_dssp HTTCSEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC--CG-GGTTCTTCSEEE
T ss_pred cccccEEEEeCCccccc-hhhhhcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCcccC--ch-HHcCCCcCCEEE
Confidence 36789999999885433 33566788999999999987 5666 8899999999999999863 54 688999999999
Q ss_pred ccCCCCCccchhhhCCCCccEEEccCCcCccCCCCC--Ccccceecc
Q 040119 81 LSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRL--PASIHGIFL 125 (366)
Q Consensus 81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~l--p~~L~~L~~ 125 (366)
|++|.+..+|. +..+++|+.|++++|.....++.+ .+.|+.|++
T Consensus 117 l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l 162 (347)
T 4fmz_A 117 LNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTV 162 (347)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEEC
T ss_pred CcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEe
Confidence 99999998886 888999999999999766555433 224444443
No 107
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.31 E-value=1.4e-12 Score=123.84 Aligned_cols=141 Identities=12% Similarity=0.109 Sum_probs=90.8
Q ss_pred CCccEEEeeCCCCCCCCC-CcCCCCCccEEECcCCCCCCCCCccC-CCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119 2 KNLKELSFRGCKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSSL-SGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL 79 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~sl-~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L 79 (366)
++|+.|+|++|......+ .+..+++|+.|++++|.+.+..|..+ ..+++|+.|+|++|.+.. +|.. ..+++|+.|
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~-~~l~~L~~L 196 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--VKGQ-VVFAKLKTL 196 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE--EECC-CCCTTCCEE
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc--cccc-cccccCCEE
Confidence 456666676666443322 23345667777777777775555555 357778888888887753 4433 347788888
Q ss_pred EccCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCC
Q 040119 80 HLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQN 159 (366)
Q Consensus 80 ~Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~ 159 (366)
+|++|.++.+|..+..+++|+.|+|++|++. .+|..+. .+++|+.++++ .+.+....+|.|+....
T Consensus 197 ~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~----~l~~~~~-----~l~~L~~L~l~-----~N~~~~~~~~~~~~~~~ 262 (317)
T 3o53_A 197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKLV----LIEKALR-----FSQNLEHFDLR-----GNGFHCGTLRDFFSKNQ 262 (317)
T ss_dssp ECCSSCCCEECGGGGGGTTCSEEECTTSCCC----EECTTCC-----CCTTCCEEECT-----TCCCBHHHHHHHHHTCH
T ss_pred ECCCCcCCcchhhhcccCcccEEECcCCccc----chhhHhh-----cCCCCCEEEcc-----CCCccCcCHHHHHhccc
Confidence 8888888888777888888888888888744 2333343 66778888776 33333224566766544
No 108
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.31 E-value=4.2e-11 Score=124.40 Aligned_cols=120 Identities=23% Similarity=0.311 Sum_probs=88.8
Q ss_pred CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEc
Q 040119 2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHL 81 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~L 81 (366)
++|+.|+|++|.+... +. .+++|+.|++++|.+. .+|. .+++|+.|+|++|++.. +|. .+++|+.|+|
T Consensus 61 ~~L~~L~L~~N~l~~l-p~--~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~--l~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLTSL-PA--LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH--LPA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCSCC-CC--CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC--CCC---CCTTCCEEEC
T ss_pred CCCcEEEecCCCCCCC-CC--cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC--CCC---CCCCcCEEEC
Confidence 5799999999985532 22 5678999999999997 6876 67889999999999864 776 5677888888
Q ss_pred cCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCC---------cCccEeeCC
Q 040119 82 SGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGC---------VSLETLSDG 137 (366)
Q Consensus 82 s~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c---------~sL~~l~~~ 137 (366)
++|+++.+|.. +++|++|+|++|++. .+|..|.+|+.|+++++ ++|+.|+++
T Consensus 129 ~~N~l~~lp~~---l~~L~~L~Ls~N~l~-~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls 189 (622)
T 3g06_A 129 FGNQLTSLPVL---PPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVS 189 (622)
T ss_dssp CSSCCSCCCCC---CTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECC
T ss_pred CCCCCCcCCCC---CCCCCEEECcCCcCC-CcCCccCCCCEEECCCCCCCCCcccCCCCcEEECC
Confidence 88888877764 467777788777644 46666666766665544 556666655
No 109
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.30 E-value=1.8e-12 Score=109.11 Aligned_cols=105 Identities=17% Similarity=0.068 Sum_probs=90.3
Q ss_pred CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
+++|+.|+|++|..... .....+++|+.|++++|.+.+.+|..+..+++|+.|+|++|.+..-..|..++.+++|+.|+
T Consensus 41 l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~ 119 (149)
T 2je0_A 41 FEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119 (149)
T ss_dssp CTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEE
T ss_pred cCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEe
Confidence 57899999999986655 55667788999999999999768888888999999999999997301348899999999999
Q ss_pred ccCCCCCccch----hhhCCCCccEEEccC
Q 040119 81 LSGNNFFTLPA----SIYRLSKLSKIFLKD 106 (366)
Q Consensus 81 Ls~N~~~~lP~----~i~~L~~L~~L~L~~ 106 (366)
+++|.++.+|. .+..+++|+.|++++
T Consensus 120 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 120 LFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999998875 789999999999864
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.30 E-value=1.5e-11 Score=127.49 Aligned_cols=101 Identities=13% Similarity=0.219 Sum_probs=54.5
Q ss_pred CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEc
Q 040119 2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHL 81 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~L 81 (366)
++|+.|+|++|.+... +....+++|+.|+|++|.+. .+|. +..+++|+.|+|++|.+.. +| .+..+++|+.|+|
T Consensus 43 ~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~Ls~N~l~-~~~~-l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCCCC-TTGGGCTTCCEEECTTSCCC-CCGG-GGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCCC-hHHccCCCCCEEEeeCCCCC-CChh-hccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEEEe
Confidence 4555666665553322 22344455666666666655 3333 5556666666666665542 33 4555566666666
Q ss_pred cCCCCCccchhhhCCCCccEEEccCCcC
Q 040119 82 SGNNFFTLPASIYRLSKLSKIFLKDCKM 109 (366)
Q Consensus 82 s~N~~~~lP~~i~~L~~L~~L~L~~n~~ 109 (366)
++|.|..+| .+..|++|+.|+|++|++
T Consensus 117 s~N~l~~l~-~l~~l~~L~~L~Ls~N~l 143 (605)
T 1m9s_A 117 EHNGISDIN-GLVHLPQLESLYLGNNKI 143 (605)
T ss_dssp TTSCCCCCG-GGGGCTTCSEEECCSSCC
T ss_pred cCCCCCCCc-cccCCCccCEEECCCCcc
Confidence 666655544 355555566666655553
No 111
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.29 E-value=5.6e-11 Score=102.90 Aligned_cols=111 Identities=19% Similarity=0.163 Sum_probs=92.7
Q ss_pred CCccEEEeeCCCCCCCCC-CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 2 KNLKELSFRGCKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
++|+.|+|++|.+....+ .+..+.+|+.|++++|.+....+..+..+++|+.|+|++|.++ +..+..+..+++|+.|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc-ccCHHHhhCCcccCEEE
Confidence 579999999998554333 3456788999999999998555556789999999999999997 44455689999999999
Q ss_pred ccCCCCCccchh-hhCCCCccEEEccCCcCccCC
Q 040119 81 LSGNNFFTLPAS-IYRLSKLSKIFLKDCKMLQNL 113 (366)
Q Consensus 81 Ls~N~~~~lP~~-i~~L~~L~~L~L~~n~~l~~l 113 (366)
|++|.|+.+|.. +..+++|+.|+|++|++.+..
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 999999999875 578999999999999977543
No 112
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.28 E-value=2e-11 Score=116.50 Aligned_cols=103 Identities=15% Similarity=0.271 Sum_probs=49.9
Q ss_pred CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCc------------
Q 040119 1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPS------------ 68 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~------------ 68 (366)
+++|+.|++++|......+....++.|+.|++++|.+. .++. +..+++|+.|++++|.+.. ++.
T Consensus 131 l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~-~~~l~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~l 206 (347)
T 4fmz_A 131 LTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK-DVTP-IANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTA 206 (347)
T ss_dssp CTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECTTSCCCC--CGGGGGCTTCCEEEC
T ss_pred CCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcC-Cchh-hccCCCCCEEEccCCcccc--cccccCCCccceeec
Confidence 35566666666643333333444445555555555554 2322 4445555555555555431 222
Q ss_pred ---------cCCCCCCCCEEEccCCCCCccchhhhCCCCccEEEccCCc
Q 040119 69 ---------GIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCK 108 (366)
Q Consensus 69 ---------~i~~L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~L~L~~n~ 108 (366)
.+..+++|+.|+|++|.++.+|. +..+++|+.|++++|+
T Consensus 207 ~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~ 254 (347)
T 4fmz_A 207 YVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQ 254 (347)
T ss_dssp CSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred ccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCc
Confidence 04444455555555555554443 4455555555555554
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.28 E-value=2.3e-11 Score=112.76 Aligned_cols=119 Identities=18% Similarity=0.171 Sum_probs=98.6
Q ss_pred CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
+++|+.|+|++|.+....+ ...+++|+.|++++|.+. .+|. +.. ++|+.|+|++|.+.. +| .++.+++|+.|+
T Consensus 62 l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~-~l~~-~~~-~~L~~L~L~~N~l~~--~~-~l~~l~~L~~L~ 134 (263)
T 1xeu_A 62 FTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLK-NLNG-IPS-ACLSRLFLDNNELRD--TD-SLIHLKNLEILS 134 (263)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCS-CCTT-CCC-SSCCEEECCSSCCSB--SG-GGTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccC-CcCc-ccc-CcccEEEccCCccCC--Ch-hhcCcccccEEE
Confidence 5789999999998665444 667788999999999998 5666 444 999999999999973 54 699999999999
Q ss_pred ccCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119 81 LSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG 137 (366)
Q Consensus 81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~ 137 (366)
|++|.++.+| .+..+++|+.|+|++|++.+. ..+. ++++|+.++++
T Consensus 135 Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-----~~l~-----~l~~L~~L~l~ 180 (263)
T 1xeu_A 135 IRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-----GGLT-----RLKKVNWIDLT 180 (263)
T ss_dssp CTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-----TTST-----TCCCCCEEEEE
T ss_pred CCCCcCCCCh-HHccCCCCCEEECCCCcCcch-----HHhc-----cCCCCCEEeCC
Confidence 9999999997 799999999999999996642 2233 67777777765
No 114
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.28 E-value=2.3e-12 Score=129.91 Aligned_cols=142 Identities=12% Similarity=0.094 Sum_probs=109.5
Q ss_pred CCCccEEEeeCCCCCCCCC-CcCCCCCccEEECcCCCCCCCCCccCC-CCCCCcEEEeecCCCCCCCCCccCCCCCCCCE
Q 040119 1 MKNLKELSFRGCKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSSLS-GLCSLTKLDISYCDLGEGAIPSGIGNLCSLEE 78 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~sl~-~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~ 78 (366)
+++|+.|+|++|.+....+ .+..+++|+.|++++|.+.+..|..+. .+++|+.|+|++|.+. + +|. +..+++|+.
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~-~-~~~-~~~l~~L~~ 195 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-D-VKG-QVVFAKLKT 195 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-E-EEC-CCCCTTCCE
T ss_pred cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc-c-ccc-cccCCCCCE
Confidence 3567888888887554433 344567899999999999987888776 7999999999999997 3 443 446999999
Q ss_pred EEccCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccC
Q 040119 79 LHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQ 158 (366)
Q Consensus 79 L~Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~ 158 (366)
|+|++|.|+.+|..+..+++|+.|+|++|++.+ +|..+. .+++|+.++++ .+.+....+|.|+...
T Consensus 196 L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~----lp~~l~-----~l~~L~~L~l~-----~N~l~c~~~~~~~~~l 261 (487)
T 3oja_A 196 LDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL----IEKALR-----FSQNLEHFDLR-----GNGFHCGTLRDFFSKN 261 (487)
T ss_dssp EECCSSCCCEECGGGGGGTTCSEEECTTSCCCE----ECTTCC-----CCTTCCEEECT-----TCCBCHHHHHHHHTTC
T ss_pred EECCCCCCCCCCHhHcCCCCccEEEecCCcCcc----cchhhc-----cCCCCCEEEcC-----CCCCcCcchHHHHHhC
Confidence 999999999999899999999999999999653 444444 67788888876 3333322466776654
Q ss_pred C
Q 040119 159 N 159 (366)
Q Consensus 159 ~ 159 (366)
.
T Consensus 262 ~ 262 (487)
T 3oja_A 262 Q 262 (487)
T ss_dssp H
T ss_pred C
Confidence 4
No 115
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.28 E-value=6.6e-11 Score=118.28 Aligned_cols=94 Identities=23% Similarity=0.356 Sum_probs=61.4
Q ss_pred CccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccchhhhCCCCccEEEcc
Q 040119 26 PINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLK 105 (366)
Q Consensus 26 ~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~L~L~ 105 (366)
+|+.|++++|.+. .+| .+..+++|+.|++++|.+.. +|... .+|+.|++++|.++.+| .+..+++|+.|+++
T Consensus 174 ~L~~L~L~~n~l~-~l~-~~~~l~~L~~L~l~~N~l~~--l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 174 SLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKK--LPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYAD 245 (454)
T ss_dssp TCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS--CCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECC
T ss_pred cccEEECcCCcCC-cCc-cccCCCCCCEEECCCCcCCc--CCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECC
Confidence 4555555555555 245 36666666666666666642 44332 36667777777777777 37788888888888
Q ss_pred CCcCccCCCCCCcccceecccCC
Q 040119 106 DCKMLQNLPRLPASIHGIFLDGC 128 (366)
Q Consensus 106 ~n~~l~~lp~lp~~L~~L~~~~c 128 (366)
+|++.+ +|..+++++.|+++++
T Consensus 246 ~N~l~~-l~~~~~~L~~L~l~~N 267 (454)
T 1jl5_A 246 NNLLKT-LPDLPPSLEALNVRDN 267 (454)
T ss_dssp SSCCSS-CCSCCTTCCEEECCSS
T ss_pred CCcCCc-ccccccccCEEECCCC
Confidence 887553 7777777777777655
No 116
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.27 E-value=2.2e-11 Score=126.14 Aligned_cols=146 Identities=18% Similarity=0.232 Sum_probs=117.7
Q ss_pred CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
|++|+.|+|++|.+....+ +..+++|+.|+|++|.+. .+| .+..+++|+.|+|++|.+.. + ..+..|++|+.|+
T Consensus 64 l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~~--l-~~l~~l~~L~~L~ 137 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLY 137 (605)
T ss_dssp CTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEECTTSCCCC--C-GGGGGCTTCSEEE
T ss_pred CCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEEecCCCCCC--C-ccccCCCccCEEE
Confidence 5899999999998655433 667788999999999997 566 59999999999999999973 4 4689999999999
Q ss_pred ccCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCCC
Q 040119 81 LSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNN 160 (366)
Q Consensus 81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~ 160 (366)
|++|.++.+ ..+..|++|+.|+|++|++.+ +++ + .++++|+.|+++ .+.+.+ +| .|....
T Consensus 138 Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~----~~~-l-----~~l~~L~~L~Ls-----~N~i~~--l~-~l~~l~- 197 (605)
T 1m9s_A 138 LGNNKITDI-TVLSRLTKLDTLSLEDNQISD----IVP-L-----AGLTKLQNLYLS-----KNHISD--LR-ALAGLK- 197 (605)
T ss_dssp CCSSCCCCC-GGGGSCTTCSEEECCSSCCCC----CGG-G-----TTCTTCCEEECC-----SSCCCB--CG-GGTTCT-
T ss_pred CCCCccCCc-hhhcccCCCCEEECcCCcCCC----chh-h-----ccCCCCCEEECc-----CCCCCC--Ch-HHccCC-
Confidence 999999988 579999999999999998654 222 3 378899999887 344432 44 355544
Q ss_pred CCceEEEECCCCCC
Q 040119 161 EGSSITISTPPKTY 174 (366)
Q Consensus 161 ~g~~~~l~L~~n~~ 174 (366)
++..++|..|.+
T Consensus 198 --~L~~L~L~~N~l 209 (605)
T 1m9s_A 198 --NLDVLELFSQEC 209 (605)
T ss_dssp --TCSEEECCSEEE
T ss_pred --CCCEEEccCCcC
Confidence 788888888776
No 117
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.25 E-value=2.9e-12 Score=121.66 Aligned_cols=126 Identities=22% Similarity=0.307 Sum_probs=94.9
Q ss_pred CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCC-CCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALS-LPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~-lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
++|+.|++++|......+....+++|+.|++++|.+... +|..+..+++|+.|+|++|.+. +..|..++.+++|+.|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~-~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS-DPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC-HHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccC-HHHHHHHhcCCCCCEEE
Confidence 567888888887555555555667899999999988754 7777888899999999999887 66788888889999999
Q ss_pred ccCC-CCC--ccchhhhCCCCccEEEccCC-cCccC-CC----CCCcccceecccCC
Q 040119 81 LSGN-NFF--TLPASIYRLSKLSKIFLKDC-KMLQN-LP----RLPASIHGIFLDGC 128 (366)
Q Consensus 81 Ls~N-~~~--~lP~~i~~L~~L~~L~L~~n-~~l~~-lp----~lp~~L~~L~~~~c 128 (366)
|++| .++ .+|..+.++++|+.|++++| .+... ++ .+|.+|+.|++++|
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 9998 677 47777888899999999988 54421 22 22335666665554
No 118
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.23 E-value=6.7e-12 Score=108.89 Aligned_cols=104 Identities=15% Similarity=0.184 Sum_probs=90.7
Q ss_pred CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCcc-CCCCCCCcEEEeecCCCCCCCCCc--cCCCCCCCCE
Q 040119 2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSS-LSGLCSLTKLDISYCDLGEGAIPS--GIGNLCSLEE 78 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~s-l~~L~~L~~L~Ls~n~l~~~~lP~--~i~~L~sL~~ 78 (366)
++|+.|+|++|.+... ..+..+++|+.|++++|.+. .+|.. +..+++|+.|+|++|.+.. +|. .++.+++|+.
T Consensus 42 ~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~--~~~~~~l~~l~~L~~ 117 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVE--LGDLDPLASLKSLTY 117 (176)
T ss_dssp TCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCSCCCCC--GGGGGGGGGCTTCCE
T ss_pred CCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEEECCCCcCCc--chhhHhhhcCCCCCE
Confidence 4899999999986554 55667788999999999998 45544 4899999999999999954 887 8999999999
Q ss_pred EEccCCCCCccchh----hhCCCCccEEEccCCcC
Q 040119 79 LHLSGNNFFTLPAS----IYRLSKLSKIFLKDCKM 109 (366)
Q Consensus 79 L~Ls~N~~~~lP~~----i~~L~~L~~L~L~~n~~ 109 (366)
|+|++|.++.+|.. +..+++|+.|++++|+.
T Consensus 118 L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 118 LCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 99999999999975 99999999999999874
No 119
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.22 E-value=1.3e-10 Score=115.99 Aligned_cols=103 Identities=18% Similarity=0.311 Sum_probs=57.9
Q ss_pred CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
+++|+.|++++|......+ ...+++|+.|++++|.+. .++ .+..+++|+.|+|++|.+. + ++. +..+++|+.|+
T Consensus 198 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~l~~n~l~-~-~~~-~~~l~~L~~L~ 271 (466)
T 1o6v_A 198 LTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLK-DIG-TLASLTNLTDLDLANNQIS-N-LAP-LSGLTKLTELK 271 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-CCG-GGGGCTTCSEEECCSSCCC-C-CGG-GTTCTTCSEEE
T ss_pred CCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcc-cch-hhhcCCCCCEEECCCCccc-c-chh-hhcCCCCCEEE
Confidence 3567777777776443322 333455666666666665 333 3556666666666666664 2 222 55566666666
Q ss_pred ccCCCCCccchhhhCCCCccEEEccCCcCc
Q 040119 81 LSGNNFFTLPASIYRLSKLSKIFLKDCKML 110 (366)
Q Consensus 81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l 110 (366)
+++|.++.+|. +..+++|+.|++++|++.
T Consensus 272 l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~ 300 (466)
T 1o6v_A 272 LGANQISNISP-LAGLTALTNLELNENQLE 300 (466)
T ss_dssp CCSSCCCCCGG-GTTCTTCSEEECCSSCCS
T ss_pred CCCCccCcccc-ccCCCccCeEEcCCCccc
Confidence 66666655554 555556666666655533
No 120
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.21 E-value=8.3e-11 Score=117.33 Aligned_cols=105 Identities=23% Similarity=0.307 Sum_probs=82.0
Q ss_pred CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
+++|+.|+|++|..... +....+++|+.|++++|.+.+ ++. +..+++|+.|+|++|.+.. +|. +..+++|+.|+
T Consensus 220 l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~ 293 (466)
T 1o6v_A 220 LTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISN-LAP-LSGLTKLTELKLGANQISN--ISP-LAGLTALTNLE 293 (466)
T ss_dssp CTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCCC--CGG-GTTCTTCSEEE
T ss_pred cCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCcccc-chh-hhcCCCCCEEECCCCccCc--ccc-ccCCCccCeEE
Confidence 46889999999875432 345566778899999998874 444 7888889999999998863 444 78888899999
Q ss_pred ccCCCCCccchhhhCCCCccEEEccCCcCccC
Q 040119 81 LSGNNFFTLPASIYRLSKLSKIFLKDCKMLQN 112 (366)
Q Consensus 81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~ 112 (366)
|++|.++.+|. +..+++|+.|++++|++.+.
T Consensus 294 L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~ 324 (466)
T 1o6v_A 294 LNENQLEDISP-ISNLKNLTYLTLYFNNISDI 324 (466)
T ss_dssp CCSSCCSCCGG-GGGCTTCSEEECCSSCCSCC
T ss_pred cCCCcccCchh-hcCCCCCCEEECcCCcCCCc
Confidence 99888887775 78888888899888886553
No 121
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.14 E-value=3.5e-10 Score=98.33 Aligned_cols=98 Identities=18% Similarity=0.305 Sum_probs=83.2
Q ss_pred ccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccchh-hhCCCCccEEEcc
Q 040119 27 INLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPAS-IYRLSKLSKIFLK 105 (366)
Q Consensus 27 L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~~-i~~L~~L~~L~L~ 105 (366)
-+.+++++|.+. .+|..+. ++|+.|+|++|++. +..|..|+.+++|+.|+|++|+|+.+|.. +.++++|+.|+|+
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 468999999996 8998764 89999999999998 66688999999999999999999999876 5899999999999
Q ss_pred CCcCccCCCCCCcc-cceecccCCcCccEeeCC
Q 040119 106 DCKMLQNLPRLPAS-IHGIFLDGCVSLETLSDG 137 (366)
Q Consensus 106 ~n~~l~~lp~lp~~-L~~L~~~~c~sL~~l~~~ 137 (366)
+|++. .+|+. +. ++++|+.|++.
T Consensus 90 ~N~l~----~l~~~~~~-----~l~~L~~L~L~ 113 (174)
T 2r9u_A 90 DNHLK----SIPRGAFD-----NLKSLTHIYLY 113 (174)
T ss_dssp SSCCC----CCCTTTTT-----TCTTCSEEECC
T ss_pred CCccc----eeCHHHhc-----cccCCCEEEeC
Confidence 99855 33333 33 67788888877
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.13 E-value=1.2e-10 Score=119.67 Aligned_cols=100 Identities=22% Similarity=0.328 Sum_probs=86.2
Q ss_pred CccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccchhhhCCCCccEEEcc
Q 040119 26 PINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLK 105 (366)
Q Consensus 26 ~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~L~L~ 105 (366)
.|+.|++++|.+. .+|. +..+++|+.|+|++|.+.. +|..|+.|++|+.|+|++|.|+.+| .++++++|+.|+|+
T Consensus 442 ~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCC-CCcC-ccccccCcEeecCcccccc--cchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECC
Confidence 4789999999998 5887 9999999999999999964 9999999999999999999999999 89999999999999
Q ss_pred CCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119 106 DCKMLQNLPRLPASIHGIFLDGCVSLETLSDG 137 (366)
Q Consensus 106 ~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~ 137 (366)
+|++.+.. .|..+. ++++|+.|+++
T Consensus 517 ~N~l~~~~--~p~~l~-----~l~~L~~L~L~ 541 (567)
T 1dce_A 517 NNRLQQSA--AIQPLV-----SCPRLVLLNLQ 541 (567)
T ss_dssp SSCCCSSS--TTGGGG-----GCTTCCEEECT
T ss_pred CCCCCCCC--CcHHHh-----cCCCCCEEEec
Confidence 99865421 145555 78888888887
No 123
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.12 E-value=4.4e-10 Score=108.02 Aligned_cols=104 Identities=18% Similarity=0.067 Sum_probs=44.7
Q ss_pred CccEEEeeCCCCCC-CCCCcCCCCCccEEECcCCCCCCCCCc-cCCCCCCCcE-EEeecCCCCCCCCCccCCCCCCCCEE
Q 040119 3 NLKELSFRGCKGSP-SSASWFLPFPINLMRWSSDPMALSLPS-SLSGLCSLTK-LDISYCDLGEGAIPSGIGNLCSLEEL 79 (366)
Q Consensus 3 ~L~~L~Ls~n~~~~-~~~~~~~~~~L~~L~ls~n~l~~~lP~-sl~~L~~L~~-L~Ls~n~l~~~~lP~~i~~L~sL~~L 79 (366)
+|++|+|++|++.. +...+..+++|+.|++++|.+.+.+|. .|.++++|+. +.+++|++. ...|..|..+++|++|
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYL 109 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-EECTTSBCCCTTCCEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-ccCchhhhhccccccc
Confidence 44555555554322 222334444455555555554333332 2344444433 333344443 2223444555555555
Q ss_pred EccCCCCCccch-hhhCCCCccEEEccCC
Q 040119 80 HLSGNNFFTLPA-SIYRLSKLSKIFLKDC 107 (366)
Q Consensus 80 ~Ls~N~~~~lP~-~i~~L~~L~~L~L~~n 107 (366)
++++|.++.+|. .+....++..|++.++
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~ 138 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDN 138 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESC
T ss_pred cccccccccCCchhhcccchhhhhhhccc
Confidence 555555554432 2223334444444443
No 124
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.11 E-value=5.5e-10 Score=96.50 Aligned_cols=98 Identities=21% Similarity=0.286 Sum_probs=82.9
Q ss_pred ccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccchh-hhCCCCccEEEcc
Q 040119 27 INLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPAS-IYRLSKLSKIFLK 105 (366)
Q Consensus 27 L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~~-i~~L~~L~~L~L~ 105 (366)
.+.+++++|.+. .+|..+ .++|+.|+|++|++. +..|..|..+++|+.|+|++|+|+.+|.. +.++++|++|+|+
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 578999999997 788866 489999999999998 66688899999999999999999998865 5899999999999
Q ss_pred CCcCccCCCCCCcc-cceecccCCcCccEeeCC
Q 040119 106 DCKMLQNLPRLPAS-IHGIFLDGCVSLETLSDG 137 (366)
Q Consensus 106 ~n~~l~~lp~lp~~-L~~L~~~~c~sL~~l~~~ 137 (366)
+|++.+ +|+. +. ++++|+.|+++
T Consensus 87 ~N~l~~----~~~~~~~-----~l~~L~~L~L~ 110 (170)
T 3g39_A 87 DNQLKS----IPRGAFD-----NLKSLTHIWLL 110 (170)
T ss_dssp SSCCCC----CCTTTTT-----TCTTCCEEECC
T ss_pred CCccCE----eCHHHhc-----CCCCCCEEEeC
Confidence 999553 3332 33 67788888887
No 125
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.10 E-value=2.5e-10 Score=109.15 Aligned_cols=103 Identities=17% Similarity=0.038 Sum_probs=76.9
Q ss_pred EEEeeCC-CCCCCCCCcCCCCCccEEECcC-CCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccC
Q 040119 6 ELSFRGC-KGSPSSASWFLPFPINLMRWSS-DPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSG 83 (366)
Q Consensus 6 ~L~Ls~n-~~~~~~~~~~~~~~L~~L~ls~-n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~ 83 (366)
.++++++ .+.. .|....+.+|+.|+|++ |.+.+..|..|.+|++|+.|+|++|+|. +..|..|+.|++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc-eeCHHHhcCCcCCCEEeCCC
Confidence 4677776 4333 22245556788888885 8887655577888888888888888887 66677788888888888888
Q ss_pred CCCCccchhhhCCCCccEEEccCCcCc
Q 040119 84 NNFFTLPASIYRLSKLSKIFLKDCKML 110 (366)
Q Consensus 84 N~~~~lP~~i~~L~~L~~L~L~~n~~l 110 (366)
|+|+.+|..+.....|+.|+|.+|++.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCcc
Confidence 888888865554444888888888754
No 126
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.05 E-value=7.9e-12 Score=121.53 Aligned_cols=109 Identities=16% Similarity=0.161 Sum_probs=77.6
Q ss_pred CCCccEEEeeCCCCCCCC-----CCcCCCCCccEEECcCCCC---CCCCCccC-------CCCCCCcEEEeecCCCCCC-
Q 040119 1 MKNLKELSFRGCKGSPSS-----ASWFLPFPINLMRWSSDPM---ALSLPSSL-------SGLCSLTKLDISYCDLGEG- 64 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~-----~~~~~~~~L~~L~ls~n~l---~~~lP~sl-------~~L~~L~~L~Ls~n~l~~~- 64 (366)
+++|++|+|++|.+.... .....+++|+.|++++|.+ .+.+|..+ ..+++|+.|+|++|.+. +
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~-~~ 109 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG-PT 109 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC-TT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC-HH
Confidence 467889999988744221 1133466788888888644 33455544 67888999999998886 4
Q ss_pred ---CCCccCCCCCCCCEEEccCCCCC-----ccchhhhCC---------CCccEEEccCCcCc
Q 040119 65 ---AIPSGIGNLCSLEELHLSGNNFF-----TLPASIYRL---------SKLSKIFLKDCKML 110 (366)
Q Consensus 65 ---~lP~~i~~L~sL~~L~Ls~N~~~-----~lP~~i~~L---------~~L~~L~L~~n~~l 110 (366)
.+|..+..+++|++|+|++|.|. .++..+..+ ++|+.|+|++|++.
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 36777888888888888888886 234445555 88888888888865
No 127
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.04 E-value=1.3e-12 Score=115.67 Aligned_cols=82 Identities=23% Similarity=0.275 Sum_probs=49.4
Q ss_pred CCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccchhhhCCCCccEE
Q 040119 23 LPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKI 102 (366)
Q Consensus 23 ~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~L 102 (366)
.+++|+.|++++|.+. .+| .+..+++|+.|+|++|.+.. +|..+..+++|+.|+|++|.++.+| .+..+++|+.|
T Consensus 46 ~l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 46 TLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HTTTCSEEECSEEEES-CCC-CHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred cCCCCCEEECCCCCCc-ccc-ccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 3455666666666665 355 45666666666666666642 5655555566666666666666655 45566666666
Q ss_pred EccCCcC
Q 040119 103 FLKDCKM 109 (366)
Q Consensus 103 ~L~~n~~ 109 (366)
++++|++
T Consensus 121 ~l~~N~i 127 (198)
T 1ds9_A 121 YMSNNKI 127 (198)
T ss_dssp EESEEEC
T ss_pred ECCCCcC
Confidence 6666653
No 128
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.04 E-value=1.2e-11 Score=117.41 Aligned_cols=107 Identities=14% Similarity=0.201 Sum_probs=79.0
Q ss_pred CCCccEEEeeCCCCCCC--CCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecC-CCCCC-CCCccCCCCCCC
Q 040119 1 MKNLKELSFRGCKGSPS--SASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYC-DLGEG-AIPSGIGNLCSL 76 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~--~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n-~l~~~-~lP~~i~~L~sL 76 (366)
+++|++|+|++|..... ......+++|+.|++++|.+....|..+..+++|+.|+|++| .++ + .+|..+..+++|
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~-~~~l~~~~~~~~~L 170 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS-EFALQTLLSSCSRL 170 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC-HHHHHHHHHHCTTC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCC-HHHHHHHHhcCCCC
Confidence 46788888888874321 122345577888888888887677777888888888888888 565 3 366667778888
Q ss_pred CEEEccCC-CCCc--cchhhhCCC-CccEEEccCCc
Q 040119 77 EELHLSGN-NFFT--LPASIYRLS-KLSKIFLKDCK 108 (366)
Q Consensus 77 ~~L~Ls~N-~~~~--lP~~i~~L~-~L~~L~L~~n~ 108 (366)
+.|+|++| .++. +|..+..++ +|+.|++++|.
T Consensus 171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 88888888 7773 677778888 88888888884
No 129
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.01 E-value=8.5e-12 Score=121.31 Aligned_cols=109 Identities=15% Similarity=0.115 Sum_probs=80.9
Q ss_pred CCCccEEEeeCCCCCC---CCCC--------cCCCCCccEEECcCCCCCC----CCCccCCCCCCCcEEEeecCCCCCCC
Q 040119 1 MKNLKELSFRGCKGSP---SSAS--------WFLPFPINLMRWSSDPMAL----SLPSSLSGLCSLTKLDISYCDLGEGA 65 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~---~~~~--------~~~~~~L~~L~ls~n~l~~----~lP~sl~~L~~L~~L~Ls~n~l~~~~ 65 (366)
+++|++|+|++|.... ..+. +..+++|+.|++++|.+.. .+|..+..+++|+.|+|++|.+. ..
T Consensus 59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~-~~ 137 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG-PQ 137 (386)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH-HH
T ss_pred CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC-HH
Confidence 4789999999985321 1111 1356789999999999986 47778888999999999999885 32
Q ss_pred CC----ccCCCC---------CCCCEEEccCCCCC--ccc---hhhhCCCCccEEEccCCcCc
Q 040119 66 IP----SGIGNL---------CSLEELHLSGNNFF--TLP---ASIYRLSKLSKIFLKDCKML 110 (366)
Q Consensus 66 lP----~~i~~L---------~sL~~L~Ls~N~~~--~lP---~~i~~L~~L~~L~L~~n~~l 110 (366)
.+ ..+..+ ++|++|+|++|.++ .+| ..+..+++|+.|+|++|++.
T Consensus 138 ~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 200 (386)
T 2ca6_A 138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR 200 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCC
T ss_pred HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 23 333333 88999999999986 455 56778889999999999754
No 130
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.95 E-value=5.7e-11 Score=114.74 Aligned_cols=165 Identities=13% Similarity=0.173 Sum_probs=98.7
Q ss_pred CCccEEEeeCCCCCCCC-----CCcCCCC-CccEEECcCCCCCCCCCccCCCC-----CCCcEEEeecCCCCCCCCCcc-
Q 040119 2 KNLKELSFRGCKGSPSS-----ASWFLPF-PINLMRWSSDPMALSLPSSLSGL-----CSLTKLDISYCDLGEGAIPSG- 69 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~-----~~~~~~~-~L~~L~ls~n~l~~~lP~sl~~L-----~~L~~L~Ls~n~l~~~~lP~~- 69 (366)
++|++|+|++|.+.... ..+...+ +|+.|++++|.+....+..+..+ ++|+.|+|++|.+. +..+..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~-~~~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS-YKSSDEL 100 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG-GSCHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC-hHHHHHH
Confidence 35888888888744332 2233445 68888888888876656556554 78888888888886 344443
Q ss_pred ---CCCC-CCCCEEEccCCCCCccch-h----hhC-CCCccEEEccCCcCccC----C----CCCCcccceecccCC---
Q 040119 70 ---IGNL-CSLEELHLSGNNFFTLPA-S----IYR-LSKLSKIFLKDCKMLQN----L----PRLPASIHGIFLDGC--- 128 (366)
Q Consensus 70 ---i~~L-~sL~~L~Ls~N~~~~lP~-~----i~~-L~~L~~L~L~~n~~l~~----l----p~lp~~L~~L~~~~c--- 128 (366)
+..+ ++|+.|+|++|.++..+. . +.. .++|+.|+|++|++... + ...|.+|+.|++++|
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 3333 778888888888875542 2 334 25788888888875521 1 123446666665543
Q ss_pred ---------------cCccEeeCCCCCCcccccCC---CCCCcccccCCCCCceEEEECCCCCC
Q 040119 129 ---------------VSLETLSDGYWRDCSIVVPG---SEIPEWFEYQNNEGSSITISTPPKTY 174 (366)
Q Consensus 129 ---------------~sL~~l~~~~f~~~~~~l~g---~~iP~~f~~~~~~g~~~~l~L~~n~~ 174 (366)
++|+.|+++ .+.+.+ ..+|..+.... .++..++|+.|.+
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls-----~N~i~~~~~~~l~~~l~~~~--~~L~~L~Ls~N~l 237 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLS-----ANLLGLKSYAELAYIFSSIP--NHVVSLNLCLNCL 237 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECT-----TSCGGGSCHHHHHHHHHHSC--TTCCEEECCSSCC
T ss_pred hhhHHHHHHHHHhCCCCCCEEECC-----CCCCChhHHHHHHHHHhcCC--CCceEEECcCCCC
Confidence 355666555 222221 11344444311 1577788887776
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.93 E-value=5.3e-12 Score=111.65 Aligned_cols=106 Identities=19% Similarity=0.218 Sum_probs=66.5
Q ss_pred CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119 1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~ 80 (366)
+++|+.|+|++|.+.. .+....+++|+.|++++|.+. .+|..+..+++|+.|+|++|.+.. +| .++.+++|+.|+
T Consensus 47 l~~L~~L~ls~n~l~~-l~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK-ISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS--LS-GIEKLVNLRVLY 121 (198)
T ss_dssp TTTCSEEECSEEEESC-CCCHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC--HH-HHHHHHHSSEEE
T ss_pred CCCCCEEECCCCCCcc-ccccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc--CC-ccccCCCCCEEE
Confidence 3566777777666333 223444456677777777665 566655556667777777776652 44 466666677777
Q ss_pred ccCCCCCccch--hhhCCCCccEEEccCCcCcc
Q 040119 81 LSGNNFFTLPA--SIYRLSKLSKIFLKDCKMLQ 111 (366)
Q Consensus 81 Ls~N~~~~lP~--~i~~L~~L~~L~L~~n~~l~ 111 (366)
|++|.++.+|. .+..+++|+.|++++|++.+
T Consensus 122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 77777766553 56667777777777776544
No 132
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.88 E-value=6.6e-09 Score=99.20 Aligned_cols=81 Identities=21% Similarity=0.199 Sum_probs=70.4
Q ss_pred cEEECcCC-CCCCCCCccCCCCCCCcEEEeec-CCCCCCCCCccCCCCCCCCEEEccCCCCCccc-hhhhCCCCccEEEc
Q 040119 28 NLMRWSSD-PMALSLPSSLSGLCSLTKLDISY-CDLGEGAIPSGIGNLCSLEELHLSGNNFFTLP-ASIYRLSKLSKIFL 104 (366)
Q Consensus 28 ~~L~ls~n-~l~~~lP~sl~~L~~L~~L~Ls~-n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP-~~i~~L~~L~~L~L 104 (366)
..++++++ .+. .+|. |..+++|+.|+|++ |.|. +..|..|+.|++|+.|+|++|+|+.+| ..|.+|++|+.|+|
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 35688888 887 7999 99999999999996 9997 444578999999999999999999776 47899999999999
Q ss_pred cCCcCcc
Q 040119 105 KDCKMLQ 111 (366)
Q Consensus 105 ~~n~~l~ 111 (366)
++|++.+
T Consensus 88 ~~N~l~~ 94 (347)
T 2ifg_A 88 SFNALES 94 (347)
T ss_dssp CSSCCSC
T ss_pred CCCccce
Confidence 9999654
No 133
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.87 E-value=5e-09 Score=100.62 Aligned_cols=57 Identities=25% Similarity=0.182 Sum_probs=29.3
Q ss_pred CCcEEEeecCCCCCCCCCccCCCCCCCCEEEcc-CCCCCccch-hhhCCCCccEEEccCCc
Q 040119 50 SLTKLDISYCDLGEGAIPSGIGNLCSLEELHLS-GNNFFTLPA-SIYRLSKLSKIFLKDCK 108 (366)
Q Consensus 50 ~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls-~N~~~~lP~-~i~~L~~L~~L~L~~n~ 108 (366)
.|+.|+|++|.|.+ +|.......+|+.|+++ +|.++.+|. .+.++++|+.|+|++|+
T Consensus 155 ~l~~L~L~~N~i~~--i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 155 ESVILWLNKNGIQE--IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213 (350)
T ss_dssp SCEEEECCSSCCCE--ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC
T ss_pred hhhhhccccccccC--CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC
Confidence 35555555555532 55444444555555554 244555553 34555555555555555
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.87 E-value=4.1e-10 Score=108.65 Aligned_cols=162 Identities=15% Similarity=0.105 Sum_probs=111.8
Q ss_pred EEEeeCCCCCCCCCCcCCCCC-ccEEECcCCCCCCCCC----ccCCCCC-CCcEEEeecCCCCCCCCCccCCCC-----C
Q 040119 6 ELSFRGCKGSPSSASWFLPFP-INLMRWSSDPMALSLP----SSLSGLC-SLTKLDISYCDLGEGAIPSGIGNL-----C 74 (366)
Q Consensus 6 ~L~Ls~n~~~~~~~~~~~~~~-L~~L~ls~n~l~~~lP----~sl~~L~-~L~~L~Ls~n~l~~~~lP~~i~~L-----~ 74 (366)
.+.|++|......+.+...+. |+.|++++|.+....+ ..+..++ +|+.|+|++|.+. +..+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~-~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG-FKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG-GSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCC-HHHHHHHHHHHhccCC
Confidence 467888887666555555544 9999999999985555 6778888 8999999999997 5556666665 8
Q ss_pred CCCEEEccCCCCCccc-hh----hhCC-CCccEEEccCCcCccCCC--------CCCcccceecccCC------------
Q 040119 75 SLEELHLSGNNFFTLP-AS----IYRL-SKLSKIFLKDCKMLQNLP--------RLPASIHGIFLDGC------------ 128 (366)
Q Consensus 75 sL~~L~Ls~N~~~~lP-~~----i~~L-~~L~~L~L~~n~~l~~lp--------~lp~~L~~L~~~~c------------ 128 (366)
+|+.|+|++|.++..+ .. +..+ ++|+.|+|++|++....+ .+|.+|+.|+++++
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 9999999999998554 32 5556 899999999999654322 12567888877654
Q ss_pred ------cCccEeeCCCCCCcccccCCCCCCcccccC-CCC-CceEEEECCCCCC
Q 040119 129 ------VSLETLSDGYWRDCSIVVPGSEIPEWFEYQ-NNE-GSSITISTPPKTY 174 (366)
Q Consensus 129 ------~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~-~~~-g~~~~l~L~~n~~ 174 (366)
++|+.|+++ .+.+.+ ..+.++... ... .++..++|+.|.+
T Consensus 161 ~l~~~~~~L~~L~Ls-----~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~i 208 (362)
T 3goz_A 161 ILAAIPANVNSLNLR-----GNNLAS-KNCAELAKFLASIPASVTSLDLSANLL 208 (362)
T ss_dssp HHHTSCTTCCEEECT-----TSCGGG-SCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHhcCCccccEeeec-----CCCCch-hhHHHHHHHHHhCCCCCCEEECCCCCC
Confidence 256666554 222222 223333221 001 2688889888887
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.70 E-value=4.7e-10 Score=110.87 Aligned_cols=36 Identities=14% Similarity=0.079 Sum_probs=18.1
Q ss_pred CCCCCEEEccCCCCCc-----cchhhhCCCCccEEEccCCc
Q 040119 73 LCSLEELHLSGNNFFT-----LPASIYRLSKLSKIFLKDCK 108 (366)
Q Consensus 73 L~sL~~L~Ls~N~~~~-----lP~~i~~L~~L~~L~L~~n~ 108 (366)
+++|+.|+|++|.++. +|..+..+++|+.|++++|+
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 4455555555555543 44444445555555555554
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.60 E-value=3.3e-09 Score=104.76 Aligned_cols=108 Identities=19% Similarity=0.220 Sum_probs=55.5
Q ss_pred CCccEEEeeCCCCCCC-----CCCcCCCCCccEEECcCCCCCCCCCccCC-----CCCCCcEEEeecCCCCCCC----CC
Q 040119 2 KNLKELSFRGCKGSPS-----SASWFLPFPINLMRWSSDPMALSLPSSLS-----GLCSLTKLDISYCDLGEGA----IP 67 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~-----~~~~~~~~~L~~L~ls~n~l~~~lP~sl~-----~L~~L~~L~Ls~n~l~~~~----lP 67 (366)
++|++|+|++|..... ......+++|+.|++++|.+....+..+. ..++|+.|+|++|.++ +. +|
T Consensus 256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~-~~~~~~l~ 334 (461)
T 1z7x_W 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT-AACCSHFS 334 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB-GGGHHHHH
T ss_pred CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCc-hHHHHHHH
Confidence 5677777777754321 11122245566777776666432221111 2246666666666664 22 34
Q ss_pred ccCCCCCCCCEEEccCCCCCcc-chhhh----C-CCCccEEEccCCcCc
Q 040119 68 SGIGNLCSLEELHLSGNNFFTL-PASIY----R-LSKLSKIFLKDCKML 110 (366)
Q Consensus 68 ~~i~~L~sL~~L~Ls~N~~~~l-P~~i~----~-L~~L~~L~L~~n~~l 110 (366)
..+..+++|+.|+|++|.+... +..+. . .++|+.|++++|++.
T Consensus 335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 4455556666666666666522 22222 1 456666666666543
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.56 E-value=3.3e-07 Score=86.98 Aligned_cols=60 Identities=12% Similarity=0.032 Sum_probs=42.9
Q ss_pred CCCccEEEeeCCCCC---------------------CCCCCcCC--------CCCccEEECcCCCCCCCCCccCCCCCCC
Q 040119 1 MKNLKELSFRGCKGS---------------------PSSASWFL--------PFPINLMRWSSDPMALSLPSSLSGLCSL 51 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~---------------------~~~~~~~~--------~~~L~~L~ls~n~l~~~lP~sl~~L~~L 51 (366)
+++|+.|||++|++. ++...+.. +.+|+.+.+.. .+...-+.+|.++++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 578999999999854 22334445 67788888887 6664445567888888
Q ss_pred cEEEeecCCC
Q 040119 52 TKLDISYCDL 61 (366)
Q Consensus 52 ~~L~Ls~n~l 61 (366)
+.|+|++|.+
T Consensus 127 ~~l~l~~n~i 136 (329)
T 3sb4_A 127 KICQIRKKTA 136 (329)
T ss_dssp CEEEBCCSSC
T ss_pred ceEEcCCCCc
Confidence 8888888875
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.48 E-value=1e-08 Score=104.51 Aligned_cols=107 Identities=15% Similarity=0.103 Sum_probs=47.5
Q ss_pred CCCccEEEeeCCCCCCCCCC-cCC-CCC-ccEEECcCCCC-CC-CCCccCCCCCCCcEEEeecCCCCCCC----CCccCC
Q 040119 1 MKNLKELSFRGCKGSPSSAS-WFL-PFP-INLMRWSSDPM-AL-SLPSSLSGLCSLTKLDISYCDLGEGA----IPSGIG 71 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~-~~~-~~~-L~~L~ls~n~l-~~-~lP~sl~~L~~L~~L~Ls~n~l~~~~----lP~~i~ 71 (366)
+++|++|+|++|........ ... .+. |+.|++++|.. .. .++..+..+++|+.|+|++|.+. +. ++..+.
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~~~~~~l~~~~~ 189 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFS-EKDGKWLHELAQ 189 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEE-CCCSHHHHHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccccc-CcchhHHHHHHh
Confidence 35666677766642211100 000 112 55555555541 00 11222234555555666555553 22 222233
Q ss_pred CCCCCCEEEccCCCCC-----ccchhhhCCCCccEEEccCCc
Q 040119 72 NLCSLEELHLSGNNFF-----TLPASIYRLSKLSKIFLKDCK 108 (366)
Q Consensus 72 ~L~sL~~L~Ls~N~~~-----~lP~~i~~L~~L~~L~L~~n~ 108 (366)
.+++|+.|+|++|.++ .++..+.++++|+.|++++|.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence 4455555555555554 233334455555555555554
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.33 E-value=1.5e-07 Score=95.87 Aligned_cols=109 Identities=14% Similarity=0.029 Sum_probs=61.7
Q ss_pred CCCccEEEeeCCCCCCCCC-----CcCCCCCccEEECcCCCCC----CCCCccCCCCCCCcEEEeecCCCCC--------
Q 040119 1 MKNLKELSFRGCKGSPSSA-----SWFLPFPINLMRWSSDPMA----LSLPSSLSGLCSLTKLDISYCDLGE-------- 63 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~-----~~~~~~~L~~L~ls~n~l~----~~lP~sl~~L~~L~~L~Ls~n~l~~-------- 63 (366)
+++|++|+|++|....... ....+++|+.|++++|.+. ..++..+.++++|+.|+|++|.+..
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~ 242 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAA 242 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHC
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhh
Confidence 4567777777765321110 1112345666666666654 1233334455666666666665431
Q ss_pred -----------------CCCCccCCCCCCCCEEEccCCCCCccchhhhCCCCccEEEccCCcC
Q 040119 64 -----------------GAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKM 109 (366)
Q Consensus 64 -----------------~~lP~~i~~L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~ 109 (366)
+..+..+..+++|+.|+++++....+|..+..+++|+.|+|++|.+
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l 305 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL 305 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCC
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcC
Confidence 1123345555566666666655556777777788888888888874
No 140
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.32 E-value=3e-08 Score=100.93 Aligned_cols=85 Identities=12% Similarity=0.073 Sum_probs=47.2
Q ss_pred CCCccEEECcCCCCCCCCCccCC-CCCCCcEEEeecC-CCCCCCCCccCCCCCCCCEEEccCCCCCc-----cchhhhCC
Q 040119 24 PFPINLMRWSSDPMALSLPSSLS-GLCSLTKLDISYC-DLGEGAIPSGIGNLCSLEELHLSGNNFFT-----LPASIYRL 96 (366)
Q Consensus 24 ~~~L~~L~ls~n~l~~~lP~sl~-~L~~L~~L~Ls~n-~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~-----lP~~i~~L 96 (366)
.+.|+.|++++|.+....+..+. .+++|+.|+|++| .+....++..+..+++|++|+|++|.++. ++.....+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 45677777777766654444443 4667777777776 33211133333456666677766666542 22222345
Q ss_pred CCccEEEccCCc
Q 040119 97 SKLSKIFLKDCK 108 (366)
Q Consensus 97 ~~L~~L~L~~n~ 108 (366)
++|+.|++++|.
T Consensus 184 ~~L~~L~l~~~~ 195 (594)
T 2p1m_B 184 TSLVSLNISCLA 195 (594)
T ss_dssp CCCCEEECTTCC
T ss_pred CcCcEEEecccC
Confidence 566666666664
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.30 E-value=1.3e-08 Score=99.01 Aligned_cols=159 Identities=14% Similarity=0.128 Sum_probs=105.0
Q ss_pred CCccEEEeeCCCCCCCCC-----Cc-CCCCCccEEECcCCCCCCCCCccC-CCCCCCcEEEeecCCCCCCCCCccC----
Q 040119 2 KNLKELSFRGCKGSPSSA-----SW-FLPFPINLMRWSSDPMALSLPSSL-SGLCSLTKLDISYCDLGEGAIPSGI---- 70 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~~-----~~-~~~~~L~~L~ls~n~l~~~lP~sl-~~L~~L~~L~Ls~n~l~~~~lP~~i---- 70 (366)
++|+.|+|++|.+..... .. .....|+.|++++|.+...-...+ ..+++|+.|+|++|.+. ..-...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~-~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG-PEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC-HHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC-HHHHHHHHHHH
Confidence 679999999998542111 01 122579999999999864322223 34678999999999996 2222222
Q ss_pred -CCCCCCCEEEccCCCCCc-----cchhhhCCCCccEEEccCCcCccC-CCCCCcccceecccCCcCccEeeCCCCCCcc
Q 040119 71 -GNLCSLEELHLSGNNFFT-----LPASIYRLSKLSKIFLKDCKMLQN-LPRLPASIHGIFLDGCVSLETLSDGYWRDCS 143 (366)
Q Consensus 71 -~~L~sL~~L~Ls~N~~~~-----lP~~i~~L~~L~~L~L~~n~~l~~-lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~ 143 (366)
...++|+.|+|++|.|+. ++..+..+++|++|+|++|.+... ...++..+. .+++|+.|+++ .
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~-----~~~~L~~L~Ls-----~ 220 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD-----RNRQLQELNVA-----Y 220 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG-----GCSCCCEEECC-----S
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh-----cCCCcCeEECC-----C
Confidence 346789999999999973 666778899999999999985421 001122222 55677777776 2
Q ss_pred cccCC---CCCCcccccCCCCCceEEEECCCCCC
Q 040119 144 IVVPG---SEIPEWFEYQNNEGSSITISTPPKTY 174 (366)
Q Consensus 144 ~~l~g---~~iP~~f~~~~~~g~~~~l~L~~n~~ 174 (366)
+.+.. ..++..+.... ++.+++|+.|.+
T Consensus 221 N~i~~~g~~~l~~~L~~~~---~L~~L~Ls~N~i 251 (372)
T 3un9_A 221 NGAGDTAALALARAAREHP---SLELLHLYFNEL 251 (372)
T ss_dssp SCCCHHHHHHHHHHHHHCS---SCCEEECTTSSC
T ss_pred CCCCHHHHHHHHHHHHhCC---CCCEEeccCCCC
Confidence 33322 12445554444 688999999988
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.26 E-value=5.1e-08 Score=94.89 Aligned_cols=131 Identities=18% Similarity=0.177 Sum_probs=91.3
Q ss_pred CCccEEEeeCCCCCCCC--CCcCCCCCccEEECcCCCCCCCCCccC-----CCCCCCcEEEeecCCCCC---CCCCccCC
Q 040119 2 KNLKELSFRGCKGSPSS--ASWFLPFPINLMRWSSDPMALSLPSSL-----SGLCSLTKLDISYCDLGE---GAIPSGIG 71 (366)
Q Consensus 2 ~~L~~L~Ls~n~~~~~~--~~~~~~~~L~~L~ls~n~l~~~lP~sl-----~~L~~L~~L~Ls~n~l~~---~~lP~~i~ 71 (366)
++|+.|+|++|.+.... .....+.+|+.|++++|.+...-...+ ...++|+.|+|++|.+.+ ..++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 58999999999753211 111223579999999999874322222 356889999999999852 02455567
Q ss_pred CCCCCCEEEccCCCCC-----ccchhhhCCCCccEEEccCCcCccC-CCCCCcccceecccCCcCccEeeCC
Q 040119 72 NLCSLEELHLSGNNFF-----TLPASIYRLSKLSKIFLKDCKMLQN-LPRLPASIHGIFLDGCVSLETLSDG 137 (366)
Q Consensus 72 ~L~sL~~L~Ls~N~~~-----~lP~~i~~L~~L~~L~L~~n~~l~~-lp~lp~~L~~L~~~~c~sL~~l~~~ 137 (366)
.+++|++|+|++|.|. .++..+...++|+.|+|++|.+... ...++..+. .+++|+.|+++
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~-----~~~~L~~L~Ls 247 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAR-----EHPSLELLHLY 247 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHH-----HCSSCCEEECT
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHH-----hCCCCCEEecc
Confidence 7899999999999998 3467788889999999999985421 001122222 56778888776
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.15 E-value=5.1e-06 Score=78.67 Aligned_cols=101 Identities=13% Similarity=0.085 Sum_probs=78.8
Q ss_pred CCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCC-ccCCCCCCCC-EEEccCCCCCccc-hhhhCCCCcc
Q 040119 24 PFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIP-SGIGNLCSLE-ELHLSGNNFFTLP-ASIYRLSKLS 100 (366)
Q Consensus 24 ~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP-~~i~~L~sL~-~L~Ls~N~~~~lP-~~i~~L~~L~ 100 (366)
+.+|+.++++.|.+...-+..|.++.+|+.|+|.+| +. .++ ..|..+.+|+ .|+|.. +++.++ .++.++++|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~--~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK--TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC--EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc--eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence 467999999999887444456889999999999997 64 254 6689999999 999988 888776 6889999999
Q ss_pred EEEccCCcCccCCCCCCcccceecccCCcCccEeeC
Q 040119 101 KIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSD 136 (366)
Q Consensus 101 ~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~ 136 (366)
.|++.+|++. .++... +.+|++|+.+..
T Consensus 301 ~l~l~~n~i~----~I~~~a----F~~~~~L~~ly~ 328 (329)
T 3sb4_A 301 YVLATGDKIT----TLGDEL----FGNGVPSKLIYK 328 (329)
T ss_dssp EEEECSSCCC----EECTTT----TCTTCCCCEEEC
T ss_pred EEEeCCCccC----ccchhh----hcCCcchhhhcc
Confidence 9999888733 333322 348999988864
No 144
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.05 E-value=1.3e-06 Score=81.08 Aligned_cols=89 Identities=18% Similarity=0.215 Sum_probs=64.9
Q ss_pred CCCCCCcEEEeecCCCCCC--CCCccCCCCCCCCEEEccCCCCCccchhhhCCC--CccEEEccCCcCccCCCCCCcccc
Q 040119 46 SGLCSLTKLDISYCDLGEG--AIPSGIGNLCSLEELHLSGNNFFTLPASIYRLS--KLSKIFLKDCKMLQNLPRLPASIH 121 (366)
Q Consensus 46 ~~L~~L~~L~Ls~n~l~~~--~lP~~i~~L~sL~~L~Ls~N~~~~lP~~i~~L~--~L~~L~L~~n~~l~~lp~lp~~L~ 121 (366)
.++++|+.|+|++|+|. + .+|..+..+++|+.|+|++|.|+.+. .+..+. +|+.|+|++|++.+.+|..+. .+
T Consensus 167 ~~l~~L~~L~Ls~N~l~-~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~-y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLY-RLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQST-YI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCC-CCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHH-HH
T ss_pred hhCCCCCEEECCCCCCC-CCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchh-HH
Confidence 46789999999999997 5 45677778999999999999999773 344444 999999999998776653321 11
Q ss_pred eecccCCcCccEeeCC
Q 040119 122 GIFLDGCVSLETLSDG 137 (366)
Q Consensus 122 ~L~~~~c~sL~~l~~~ 137 (366)
.-.+..+++|+.|+..
T Consensus 244 ~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 244 SAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHCTTCCEESSC
T ss_pred HHHHHHCcccCeECCc
Confidence 1123367777777643
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.04 E-value=5e-07 Score=78.96 Aligned_cols=84 Identities=11% Similarity=0.082 Sum_probs=36.7
Q ss_pred CCccEEECcCC-CCCC----CCCccCCCCCCCcEEEeecCCCCCC---CCCccCCCCCCCCEEEccCCCCCc-----cch
Q 040119 25 FPINLMRWSSD-PMAL----SLPSSLSGLCSLTKLDISYCDLGEG---AIPSGIGNLCSLEELHLSGNNFFT-----LPA 91 (366)
Q Consensus 25 ~~L~~L~ls~n-~l~~----~lP~sl~~L~~L~~L~Ls~n~l~~~---~lP~~i~~L~sL~~L~Ls~N~~~~-----lP~ 91 (366)
+.|+.|++++| .+.. .+...+...++|+.|+|++|.+.+. .+...+...++|++|+|++|.|.. +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 33555555555 4432 1223334444555555555554310 012223333445555555555541 334
Q ss_pred hhhCCCCccEEEc--cCCc
Q 040119 92 SIYRLSKLSKIFL--KDCK 108 (366)
Q Consensus 92 ~i~~L~~L~~L~L--~~n~ 108 (366)
.+...+.|+.|+| ++|.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp GGGGCSSCCEEECCCCSSC
T ss_pred HHHhCCCceEEEecCCCCC
Confidence 4444455555555 4444
No 146
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.98 E-value=4.3e-06 Score=77.68 Aligned_cols=77 Identities=23% Similarity=0.238 Sum_probs=61.9
Q ss_pred CCCccEEECcCCCCCC--CCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCC--CCCEEEccCCCCC-ccc-------h
Q 040119 24 PFPINLMRWSSDPMAL--SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLC--SLEELHLSGNNFF-TLP-------A 91 (366)
Q Consensus 24 ~~~L~~L~ls~n~l~~--~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~--sL~~L~Ls~N~~~-~lP-------~ 91 (366)
++.|+.|+|++|.+.+ .+|..+..+++|+.|+|++|+|.. + ..+..+. +|+.|+|++|.+. .+| .
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~--~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS--E-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS--G-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC--c-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 5679999999999986 455666789999999999999973 3 3344444 9999999999998 455 2
Q ss_pred hhhCCCCccEEE
Q 040119 92 SIYRLSKLSKIF 103 (366)
Q Consensus 92 ~i~~L~~L~~L~ 103 (366)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 477889999887
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.85 E-value=2.7e-06 Score=86.33 Aligned_cols=107 Identities=15% Similarity=0.073 Sum_probs=67.1
Q ss_pred CCCccEEEeeCCCCCCCCCC--cCCCCCccEEECc--C----CCCCCCCC------ccCCCCCCCcEEEeecCCCCCCCC
Q 040119 1 MKNLKELSFRGCKGSPSSAS--WFLPFPINLMRWS--S----DPMALSLP------SSLSGLCSLTKLDISYCDLGEGAI 66 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~--~~~~~~L~~L~ls--~----n~l~~~lP------~sl~~L~~L~~L~Ls~n~l~~~~l 66 (366)
+++|+.|.++.|........ ...+++|+.|+++ + +.++ ..| ..+..+++|+.|+|++ .+. +..
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~~-~l~-~~~ 447 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLSG-LLT-DKV 447 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECCS-SCC-HHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCccEEeecC-ccc-HHH
Confidence 46788887776664322111 1135678888887 3 4444 222 2245677888888876 555 333
Q ss_pred CccCCC-CCCCCEEEccCCCCCc-cchhh-hCCCCccEEEccCCcCc
Q 040119 67 PSGIGN-LCSLEELHLSGNNFFT-LPASI-YRLSKLSKIFLKDCKML 110 (366)
Q Consensus 67 P~~i~~-L~sL~~L~Ls~N~~~~-lP~~i-~~L~~L~~L~L~~n~~l 110 (366)
+..++. +++|+.|+|++|.++. .+..+ ..+++|+.|+|++|++.
T Consensus 448 ~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 448 FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred HHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence 444444 7788888888888862 22233 66888888888888853
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.80 E-value=0.00015 Score=71.04 Aligned_cols=101 Identities=12% Similarity=0.213 Sum_probs=48.2
Q ss_pred CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCC-CccCCCC--------
Q 040119 3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAI-PSGIGNL-------- 73 (366)
Q Consensus 3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~l-P~~i~~L-------- 73 (366)
+|+.+.|..+-..+....+..+.+|+.+++..|.+. .+|.......+|+.+.|..+ +. .+ ...|..+
T Consensus 158 ~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~-l~--~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLPVT-LK--EIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECCTT-CC--EECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCCCccEehHHHhhCcccCCeeecCCCcce-EechhhEeecccCEEEeCCc-hh--eehhhHhhCCCCCCEEec
Confidence 345555544323333344445555666666555554 33332222344555544422 22 12 2233344
Q ss_pred --------------CCCCEEEccCCCCCccc-hhhhCCCCccEEEccCCc
Q 040119 74 --------------CSLEELHLSGNNFFTLP-ASIYRLSKLSKIFLKDCK 108 (366)
Q Consensus 74 --------------~sL~~L~Ls~N~~~~lP-~~i~~L~~L~~L~L~~n~ 108 (366)
.+|+.+.| .++++.++ .++.++++|+.+.+.+|.
T Consensus 234 ~~~l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 234 PENVSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGST 282 (401)
T ss_dssp CTTCCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSC
T ss_pred CCCccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCcc
Confidence 44555555 23455553 356667777777776654
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.66 E-value=1.3e-05 Score=77.70 Aligned_cols=157 Identities=15% Similarity=0.037 Sum_probs=91.2
Q ss_pred CCCccEEEeeCCCCCC----------CCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccC
Q 040119 1 MKNLKELSFRGCKGSP----------SSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGI 70 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~----------~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i 70 (366)
+++|+.|.+....... .......++.|+.|.+++|.-. .+|. +. +++|+.|+|..|.+. ......+
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~-~~~l~~l 213 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLP-DSVVEDI 213 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCC-HHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCC-hHHHHHH
Confidence 4789999997653210 0011234578999999888422 4555 43 889999999988875 2222233
Q ss_pred C--CCCCCCEEEccC--CC------CCccchhh--hCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCC
Q 040119 71 G--NLCSLEELHLSG--NN------FFTLPASI--YRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGY 138 (366)
Q Consensus 71 ~--~L~sL~~L~Ls~--N~------~~~lP~~i--~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~ 138 (366)
. .+++|+.|+|+. |. +..+...+ ..+++|++|+|.+|.+....+ ..+. .+..++.|++|+++
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~---~~la--~a~~~~~L~~LdLs- 287 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVV---EMFL--ESDILPQLETMDIS- 287 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHH---HHHH--HCSSGGGCSEEECC-
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHH---HHHH--hCccCCCCCEEECC-
Confidence 3 688999999863 22 22222222 357899999999988653211 0111 11135677777775
Q ss_pred CCCcccccCCC---CCCcccccCCCCCceEEEECCCCCC
Q 040119 139 WRDCSIVVPGS---EIPEWFEYQNNEGSSITISTPPKTY 174 (366)
Q Consensus 139 f~~~~~~l~g~---~iP~~f~~~~~~g~~~~l~L~~n~~ 174 (366)
.+.+.+. .++..+.+.. ++..++|..|.+
T Consensus 288 ----~n~L~d~G~~~L~~~L~~l~---~L~~L~L~~n~i 319 (362)
T 2ra8_A 288 ----AGVLTDEGARLLLDHVDKIK---HLKFINMKYNYL 319 (362)
T ss_dssp ----SSCCBHHHHHHHHTTHHHHT---TCSEEECCSBBC
T ss_pred ----CCCCChHHHHHHHhhcccCC---cceEEECCCCcC
Confidence 2222221 2333333334 677888888876
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.61 E-value=0.00046 Score=67.51 Aligned_cols=123 Identities=14% Similarity=0.126 Sum_probs=69.7
Q ss_pred CCCccEEEeeCCCCC-CCCCCcCCCCCccEEECcCCCCCCCCCccCCCCC----------------------CCcEEEee
Q 040119 1 MKNLKELSFRGCKGS-PSSASWFLPFPINLMRWSSDPMALSLPSSLSGLC----------------------SLTKLDIS 57 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~-~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~----------------------~L~~L~Ls 57 (366)
+++|+.++|..|+.. .+...+. ...|+.+.+..+ +...-...|.+++ +|+.+.|.
T Consensus 179 c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp 256 (401)
T 4fdw_A 179 CYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLP 256 (401)
T ss_dssp CTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEE
T ss_pred cccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeC
Confidence 467888888776522 2222222 234555554422 2212223334444 45555552
Q ss_pred cCCCCCCCC-CccCCCCCCCCEEEccCCCCC-----ccc-hhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcC
Q 040119 58 YCDLGEGAI-PSGIGNLCSLEELHLSGNNFF-----TLP-ASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVS 130 (366)
Q Consensus 58 ~n~l~~~~l-P~~i~~L~sL~~L~Ls~N~~~-----~lP-~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~s 130 (366)
+++. .+ +..|..+++|+.+.+.+|.+. .++ .++.++++|+.+.|.++ +..|+. --+.+|++
T Consensus 257 -~~i~--~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~-------~aF~~c~~ 324 (401)
T 4fdw_A 257 -NGVT--NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQ-------GLLGGNRK 324 (401)
T ss_dssp -TTCC--EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECT-------TTTTTCCS
T ss_pred -CCcc--EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhh-------hhhcCCCC
Confidence 2333 13 456888999999999988776 455 57889999999998742 222221 12346777
Q ss_pred ccEeeCC
Q 040119 131 LETLSDG 137 (366)
Q Consensus 131 L~~l~~~ 137 (366)
|+.+.++
T Consensus 325 L~~l~lp 331 (401)
T 4fdw_A 325 VTQLTIP 331 (401)
T ss_dssp CCEEEEC
T ss_pred ccEEEEC
Confidence 7776654
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.47 E-value=4.2e-05 Score=66.50 Aligned_cols=81 Identities=15% Similarity=0.239 Sum_probs=44.0
Q ss_pred CccEEECcCCCCCCCCCccCCCCCCCcEEEeecCC-CCCCCCCccCCCC----CCCCEEEccCCC-CC--ccchhhhCCC
Q 040119 26 PINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCD-LGEGAIPSGIGNL----CSLEELHLSGNN-FF--TLPASIYRLS 97 (366)
Q Consensus 26 ~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~-l~~~~lP~~i~~L----~sL~~L~Ls~N~-~~--~lP~~i~~L~ 97 (366)
.|+.|+++++.++..--..+..+++|+.|+|++|. +++ .--..+..+ ++|++|+|++|. ++ .+ ..+..++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD-~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED-GCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH-HHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH-HHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCC
Confidence 46666666666554333445666667777777664 331 111223332 246666666653 55 12 2455566
Q ss_pred CccEEEccCCc
Q 040119 98 KLSKIFLKDCK 108 (366)
Q Consensus 98 ~L~~L~L~~n~ 108 (366)
+|+.|+|++|.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 66666666665
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.43 E-value=2e-05 Score=76.36 Aligned_cols=129 Identities=15% Similarity=0.080 Sum_probs=82.0
Q ss_pred CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccC--CCCCCCcEEEeecC--CCCCCC-----CCccC-
Q 040119 1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSL--SGLCSLTKLDISYC--DLGEGA-----IPSGI- 70 (366)
Q Consensus 1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl--~~L~~L~~L~Ls~n--~l~~~~-----lP~~i- 70 (366)
+|+|+.|+|++|..... +. ...++|+.|.+..+.+.......+ ..+++|+.|+|+.+ ... +. +...+
T Consensus 171 ~P~L~~L~L~g~~~l~l-~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~-~~~~~~~l~~~l~ 247 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNLSI-GK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYG-FDGDMNVFRPLFS 247 (362)
T ss_dssp CTTCCEEEEECCBTCBC-CS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGT-CCSCGGGTGGGSC
T ss_pred CCCCcEEEEeCCCCcee-cc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccc-cchhHHHHHHHHh
Confidence 47999999999842221 12 236789999999887754322233 37899999999642 211 11 11222
Q ss_pred -CCCCCCCEEEccCCCCC-ccchhhh---CCCCccEEEccCCcCccCC-CCCCcccceecccCCcCccEeeCC
Q 040119 71 -GNLCSLEELHLSGNNFF-TLPASIY---RLSKLSKIFLKDCKMLQNL-PRLPASIHGIFLDGCVSLETLSDG 137 (366)
Q Consensus 71 -~~L~sL~~L~Ls~N~~~-~lP~~i~---~L~~L~~L~L~~n~~l~~l-p~lp~~L~~L~~~~c~sL~~l~~~ 137 (366)
..+++|+.|+|.+|.+. ..+..+. .+++|+.|+|+.|.+...- ..++..++ ++++|+.|+++
T Consensus 248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~-----~l~~L~~L~L~ 315 (362)
T 2ra8_A 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVD-----KIKHLKFINMK 315 (362)
T ss_dssp TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHH-----HHTTCSEEECC
T ss_pred cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcc-----cCCcceEEECC
Confidence 35789999999999987 2333333 5789999999998854310 01122222 56777777775
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.34 E-value=6.5e-05 Score=65.34 Aligned_cols=107 Identities=12% Similarity=0.066 Sum_probs=56.3
Q ss_pred CCccEEEeeCC-CCCCC-----CCCcCCCCCccEEECcCCCCCC----CCCccCCCCCCCcEEEeecCCCCCC---CCCc
Q 040119 2 KNLKELSFRGC-KGSPS-----SASWFLPFPINLMRWSSDPMAL----SLPSSLSGLCSLTKLDISYCDLGEG---AIPS 68 (366)
Q Consensus 2 ~~L~~L~Ls~n-~~~~~-----~~~~~~~~~L~~L~ls~n~l~~----~lP~sl~~L~~L~~L~Ls~n~l~~~---~lP~ 68 (366)
++|++|+|++| .+... .........|+.|+|++|.+.. .+...+...++|+.|+|++|.|.+. .+..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 45666666666 42211 0111223456666666666642 1233344445666666666666410 0234
Q ss_pred cCCCCCCCCEEEc--cCCCCC-----ccchhhhCCCCccEEEccCCc
Q 040119 69 GIGNLCSLEELHL--SGNNFF-----TLPASIYRLSKLSKIFLKDCK 108 (366)
Q Consensus 69 ~i~~L~sL~~L~L--s~N~~~-----~lP~~i~~L~~L~~L~L~~n~ 108 (366)
.+...++|+.|+| ++|.|. .+...+...+.|+.|+|++|.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 4555566666666 566665 234455555666666666665
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.22 E-value=0.00031 Score=60.99 Aligned_cols=70 Identities=11% Similarity=0.114 Sum_probs=49.6
Q ss_pred CCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCC-CCcc-chhhhCC----CCccEEEccCCcCc
Q 040119 40 SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNN-FFTL-PASIYRL----SKLSKIFLKDCKML 110 (366)
Q Consensus 40 ~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~-~~~l-P~~i~~L----~~L~~L~L~~n~~l 110 (366)
.+|.....-.+|+.|||++|.+++ .--..+..+++|+.|+|++|. |+.- =..|..+ ++|+.|+|++|..+
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd-~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I 127 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMS-IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV 127 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCG-GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred cCCcccCCCceEeEEeCcCCCccH-HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence 345433333579999999999873 323456889999999999995 6621 1245554 37999999999743
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.86 E-value=0.0064 Score=58.04 Aligned_cols=59 Identities=19% Similarity=0.190 Sum_probs=31.7
Q ss_pred cCCCCCCCcEEEeecCCCCCCCCC-ccCCCCCCCCEEEccCCCCCccc-hhhhCCCCccEEEcc
Q 040119 44 SLSGLCSLTKLDISYCDLGEGAIP-SGIGNLCSLEELHLSGNNFFTLP-ASIYRLSKLSKIFLK 105 (366)
Q Consensus 44 sl~~L~~L~~L~Ls~n~l~~~~lP-~~i~~L~sL~~L~Ls~N~~~~lP-~~i~~L~~L~~L~L~ 105 (366)
.+.++.+|+.+.+..+ +. .++ ..|..+.+|+.+.+.++.++.|+ .++.++.+|+.+.|.
T Consensus 258 aF~~~~~l~~i~l~~~-i~--~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VK--TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTTTCTTCCEEEECCC-CS--EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred ccceeehhcccccccc-ce--eccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 3445555555555432 22 132 34555666666666666666554 355566666666653
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.73 E-value=0.003 Score=51.67 Aligned_cols=34 Identities=32% Similarity=0.405 Sum_probs=16.8
Q ss_pred CCCEEEccCCCCCccch-hhhCCCCccEEEccCCc
Q 040119 75 SLEELHLSGNNFFTLPA-SIYRLSKLSKIFLKDCK 108 (366)
Q Consensus 75 sL~~L~Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~ 108 (366)
+|+.|+|++|+|+.||. .+..+++|+.|+|.+|+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 34555555555555543 23445555555555554
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.54 E-value=0.0083 Score=57.27 Aligned_cols=99 Identities=16% Similarity=0.112 Sum_probs=65.7
Q ss_pred CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCC-CccCCCCCCCCEEEc
Q 040119 3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAI-PSGIGNLCSLEELHL 81 (366)
Q Consensus 3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~l-P~~i~~L~sL~~L~L 81 (366)
+|+.+.+..+-.......+.....|+.+.+..+ +...-...|.++.+|+.+.+.++.+.. + ...|..+.+|+.+.|
T Consensus 241 ~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~--I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 241 ALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIET--LEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp SCCEEEECTTCCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCE--ECTTTTTTCTTCCEEEC
T ss_pred cceEEEcCCCccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccce--ehhhhhcCCCCCCEEEc
Confidence 455555544432233334445556777776543 332333457889999999999988853 5 467889999999999
Q ss_pred cCCCCCccch-hhhCCCCccEEEcc
Q 040119 82 SGNNFFTLPA-SIYRLSKLSKIFLK 105 (366)
Q Consensus 82 s~N~~~~lP~-~i~~L~~L~~L~L~ 105 (366)
.. +++.|+. ++.++++|+.+.+.
T Consensus 318 p~-~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 318 PT-ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CT-TCCEECTTTTTTCTTCCCCCCC
T ss_pred Cc-cccEEHHHHhhCCCCCCEEEEC
Confidence 64 4777764 67788888776653
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.32 E-value=0.017 Score=55.68 Aligned_cols=104 Identities=11% Similarity=0.176 Sum_probs=68.1
Q ss_pred CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCC-ccCCCCCCCCEEEccCCCCCccc-hhhhCCC
Q 040119 20 SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIP-SGIGNLCSLEELHLSGNNFFTLP-ASIYRLS 97 (366)
Q Consensus 20 ~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP-~~i~~L~sL~~L~Ls~N~~~~lP-~~i~~L~ 97 (366)
.+.....|+.+.+..+... .-...+.++..|+.+.+.. .+. .++ ..|..+.+|+.+.|.. +++.|. .++.+++
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~--~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RIT--ELPESVFAGCISLKSIDIPE-GITQILDDAFAGCE 334 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCC--EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCT
T ss_pred eeeecccccEEecccccce-ecCcccccccccccccCCC-ccc--ccCceeecCCCCcCEEEeCC-cccEehHhHhhCCC
Confidence 4455566777777655432 3345577788888888863 443 254 4577888888888874 477665 4678888
Q ss_pred CccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119 98 KLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG 137 (366)
Q Consensus 98 ~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~ 137 (366)
+|+.+.+..+ +. .+..--+.+|++|+.+.+.
T Consensus 335 ~L~~i~ip~s--v~-------~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 335 QLERIAIPSS--VT-------KIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp TCCEEEECTT--CC-------BCCGGGGTTCTTCCEEEES
T ss_pred CCCEEEECcc--cC-------EEhHhHhhCCCCCCEEEEC
Confidence 8888887543 11 2222234588888888776
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.08 E-value=0.023 Score=54.66 Aligned_cols=97 Identities=11% Similarity=0.033 Sum_probs=48.1
Q ss_pred CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEcc
Q 040119 3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLS 82 (366)
Q Consensus 3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls 82 (366)
+|+.+.+...........+.....|+.+.+..+... .-...+..+..|+.+.+....+. ...+..+.+|+.+.+.
T Consensus 231 ~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~----~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 231 GVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP----EKTFYGCSSLTEVKLL 305 (394)
T ss_dssp CCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC----TTTTTTCTTCCEEEEC
T ss_pred CCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec----cccccccccccccccc
Confidence 456666654433333344455556666666555432 33344555555665555443321 1234455555555554
Q ss_pred CCCCCccc-hhhhCCCCccEEEcc
Q 040119 83 GNNFFTLP-ASIYRLSKLSKIFLK 105 (366)
Q Consensus 83 ~N~~~~lP-~~i~~L~~L~~L~L~ 105 (366)
. +++.++ .++.++++|+.+++.
T Consensus 306 ~-~i~~I~~~aF~~c~~L~~i~lp 328 (394)
T 4fs7_A 306 D-SVKFIGEEAFESCTSLVSIDLP 328 (394)
T ss_dssp T-TCCEECTTTTTTCTTCCEECCC
T ss_pred c-ccceechhhhcCCCCCCEEEeC
Confidence 3 244443 245555555555543
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.01 E-value=0.036 Score=53.24 Aligned_cols=76 Identities=18% Similarity=0.119 Sum_probs=45.6
Q ss_pred CCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccc-hhhhCCCCccEEE
Q 040119 25 FPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLP-ASIYRLSKLSKIF 103 (366)
Q Consensus 25 ~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP-~~i~~L~~L~~L~ 103 (366)
..|+.+.+..+. ...-...+..+..|+.+.+..+... .-...+.....|+.+.+..+. +| ..+..+.+|+.+.
T Consensus 230 ~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~--i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~ 303 (394)
T 4fs7_A 230 TGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR--IGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVK 303 (394)
T ss_dssp CCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE--ECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEE
T ss_pred CCCceEEECCCc-eecccccccccccceeEEcCCCcce--eeccccccccccceeccCcee---eccccccccccccccc
Confidence 446666654332 2122345667778888888776542 234566777778877765542 33 3566777787777
Q ss_pred ccC
Q 040119 104 LKD 106 (366)
Q Consensus 104 L~~ 106 (366)
+.+
T Consensus 304 l~~ 306 (394)
T 4fs7_A 304 LLD 306 (394)
T ss_dssp ECT
T ss_pred ccc
Confidence 654
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.59 E-value=0.022 Score=46.44 Aligned_cols=56 Identities=23% Similarity=0.358 Sum_probs=43.5
Q ss_pred cEEECcCCCCC-CCCCccCCCCCCCcEEEeecCCCCCCCCC-ccCCCCCCCCEEEccCCCCC
Q 040119 28 NLMRWSSDPMA-LSLPSSLSGLCSLTKLDISYCDLGEGAIP-SGIGNLCSLEELHLSGNNFF 87 (366)
Q Consensus 28 ~~L~ls~n~l~-~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP-~~i~~L~sL~~L~Ls~N~~~ 87 (366)
..++.+++.+. ..+|..+. .+|+.|+|++|+|+. +| ..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTA--LPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSS--CCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCc--cChhhhhhccccCEEEecCCCee
Confidence 36778888874 26775432 469999999999974 65 45788999999999999886
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.72 E-value=0.15 Score=48.75 Aligned_cols=84 Identities=15% Similarity=0.207 Sum_probs=59.4
Q ss_pred CccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccch-hhhCCCCccEEEccCCcCccCCCCCCccc
Q 040119 42 PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPA-SIYRLSKLSKIFLKDCKMLQNLPRLPASI 120 (366)
Q Consensus 42 P~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~~l~~lp~lp~~L 120 (366)
...|.++..|+.+.+..+... .-...|..+.+|+.+.+. +.++.++. ++.++.+|+.+.|..+ +. .+
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~--I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~-------~I 325 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS--IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--IT-------QI 325 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE--ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CC-------EE
T ss_pred cceeeecccccEEecccccce--ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--cc-------Ee
Confidence 345778889999998765442 124567888999999996 66777874 6888999999988643 11 12
Q ss_pred ceecccCCcCccEeeCC
Q 040119 121 HGIFLDGCVSLETLSDG 137 (366)
Q Consensus 121 ~~L~~~~c~sL~~l~~~ 137 (366)
..--+.+|++|+.+.++
T Consensus 326 ~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 326 LDDAFAGCEQLERIAIP 342 (394)
T ss_dssp CTTTTTTCTTCCEEEEC
T ss_pred hHhHhhCCCCCCEEEEC
Confidence 22234589999988876
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.44 E-value=0.0099 Score=52.35 Aligned_cols=84 Identities=12% Similarity=0.083 Sum_probs=52.4
Q ss_pred CCccEEECcCC-CCCC----CCCccCCCCCCCcEEEeecCCCCC---CCCCccCCCCCCCCEEEccCCCCC-----ccch
Q 040119 25 FPINLMRWSSD-PMAL----SLPSSLSGLCSLTKLDISYCDLGE---GAIPSGIGNLCSLEELHLSGNNFF-----TLPA 91 (366)
Q Consensus 25 ~~L~~L~ls~n-~l~~----~lP~sl~~L~~L~~L~Ls~n~l~~---~~lP~~i~~L~sL~~L~Ls~N~~~-----~lP~ 91 (366)
..|+.|+|++| .+.. .+-..+..-+.|+.|+|++|.+.+ ..+-..+..-++|+.|+|+.|.|. .|-.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 45777777774 5542 233345555678888888888752 012233444567888888888887 3444
Q ss_pred hhhCCCCccEEEccCCc
Q 040119 92 SIYRLSKLSKIFLKDCK 108 (366)
Q Consensus 92 ~i~~L~~L~~L~L~~n~ 108 (366)
.+..=+.|+.|+|++|.
T Consensus 121 aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQR 137 (197)
T ss_dssp HTTTTCCCSEEECCCCS
T ss_pred HHhhCCceeEEECCCCc
Confidence 55555668888887653
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.14 E-value=0.014 Score=51.28 Aligned_cols=64 Identities=13% Similarity=0.119 Sum_probs=39.1
Q ss_pred CCCCCCcEEEeecC-CCCCC---CCCccCCCCCCCCEEEccCCCCC-----ccchhhhCCCCccEEEccCCcC
Q 040119 46 SGLCSLTKLDISYC-DLGEG---AIPSGIGNLCSLEELHLSGNNFF-----TLPASIYRLSKLSKIFLKDCKM 109 (366)
Q Consensus 46 ~~L~~L~~L~Ls~n-~l~~~---~lP~~i~~L~sL~~L~Ls~N~~~-----~lP~~i~~L~~L~~L~L~~n~~ 109 (366)
.+-+.|+.|+|++| .|.+. .+-..+..-++|+.|+|++|.|. .|-..+..=+.|+.|+|+.|.+
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 44556777777764 55310 12234455567777777777776 3445555556777777777774
No 165
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=85.30 E-value=0.2 Score=28.17 Aligned_cols=13 Identities=62% Similarity=0.938 Sum_probs=10.7
Q ss_pred CCCCCCchhhhcc
Q 040119 352 NDDEEPQPKRFRL 364 (366)
Q Consensus 352 ~~~~~~~~~r~~~ 364 (366)
|++|||++||-|+
T Consensus 15 dedeepprkrkrl 27 (28)
T 3ukw_C 15 DEDEEPPRKRKRL 27 (28)
T ss_dssp CGGGSCCSSCCCC
T ss_pred ccccCcchhhhcc
Confidence 5679999999875
No 166
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=32.34 E-value=16 Score=20.45 Aligned_cols=13 Identities=54% Similarity=0.953 Sum_probs=8.5
Q ss_pred CCCCCCchhhhcc
Q 040119 352 NDDEEPQPKRFRL 364 (366)
Q Consensus 352 ~~~~~~~~~r~~~ 364 (366)
||++.|+.||-|+
T Consensus 15 dddddppkkrrrl 27 (28)
T 3ukx_C 15 DDDDDPPKKRRRL 27 (28)
T ss_dssp CCSSSCCSCCCCC
T ss_pred ccCCCchhhhhcc
Confidence 4456777777664
Done!