BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040120
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4J2F|A Chain A, Crystal Structure Of A Glutathione Transferase Family
Member From Ricinus Communis, Target Efi-501866
Length = 223
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 11 ALKSIGSADGAEAKEAAIEQLIEGLVLLEDAFVKCSKGKPFFGGSQIGFLDIAFGCYLGW 70
A+ +I G E E A++ +E L +E+ + S K +FGG +IG +DIAF W
Sbjct: 107 AIWNIFRTKGEEL-EKAVKNCLEVLKTIEEHAMGVSDDK-YFGGDKIGIVDIAFCGIAHW 164
Query: 71 VRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKLAEFAK 119
+ V E++ VK+L+ K P L W E F +K+ +P+ D++ F K
Sbjct: 165 LGVIEEVAGVKVLESQKFPRLHAWTENFKEAPIIKENLPDRDQMTAFFK 213
>pdb|1GWC|A Chain A, The Structure Of A Tau Class Glutathione S-Transferase
From Wheat, Active In Herbicide Detoxification
pdb|1GWC|B Chain B, The Structure Of A Tau Class Glutathione S-Transferase
From Wheat, Active In Herbicide Detoxification
pdb|1GWC|C Chain C, The Structure Of A Tau Class Glutathione S-Transferase
From Wheat, Active In Herbicide Detoxification
Length = 230
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 54/96 (56%)
Query: 22 EAKEAAIEQLIEGLVLLEDAFVKCSKGKPFFGGSQIGFLDIAFGCYLGWVRVTEKMNEVK 81
E K +Q + +LE A +CSKG FFGG +G +D+A G L W++VTE ++ K
Sbjct: 123 EEKSEGKKQAFAAVGVLEGALRECSKGGGFFGGDGVGLVDVALGGVLSWMKVTEALSGDK 182
Query: 82 LLDEVKTPGLFKWAERFCADAAVKDVMPETDKLAEF 117
+ D KTP L W ERF A K +P+ +L EF
Sbjct: 183 IFDAAKTPLLAAWVERFIELDAAKAALPDVGRLLEF 218
>pdb|2VO4|A Chain A, Glutathione Transferase From Glycine Max
pdb|2VO4|B Chain B, Glutathione Transferase From Glycine Max
pdb|3FHS|A Chain A, Glutathione Transferase From Glycine Max At 2.7 Resolution
pdb|3FHS|B Chain B, Glutathione Transferase From Glycine Max At 2.7 Resolution
Length = 219
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 7/119 (5%)
Query: 5 DVKLFPALKSIGSADGAEAKEAAIEQLIEGLVLLEDAFVKCSKGKPFFGGSQIGFLDIAF 64
D K++ + I ++ G E KEAA ++ IE L LLE+ K +FGG +GF+DIA
Sbjct: 103 DKKIYDLGRKIWTSKGEE-KEAAKKEFIEALKLLEEQL----GDKTYFGGDNLGFVDIAL 157
Query: 65 GCYLGWVRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKLAEFAKVLAK 123
+ W + E + + E + P WA+R +V +P+ K+ EF L K
Sbjct: 158 VPFYTWFKAYETFGTLNI--ESECPKFIAWAKRCLQKESVAKSLPDQQKVYEFIMDLRK 214
>pdb|1GZD|A Chain A, Crystal Structure Of Pig Phosphoglucose Isomerase
pdb|1GZV|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase From Pig
Muscle Complexed With 5-Phosphoarabinonate
Length = 557
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 105 KDVMPETDKLAEFAKVLAKLRASGKW 130
KDVMPE +++ E K K SG+W
Sbjct: 115 KDVMPEVNRVLEKMKSFCKRVRSGEW 140
>pdb|3NBU|A Chain A, Crystal Structure Of Pgi Glucosephosphate Isomerase
pdb|3NBU|B Chain B, Crystal Structure Of Pgi Glucosephosphate Isomerase
pdb|3NBU|C Chain C, Crystal Structure Of Pgi Glucosephosphate Isomerase
pdb|3NBU|D Chain D, Crystal Structure Of Pgi Glucosephosphate Isomerase
pdb|3NBU|E Chain E, Crystal Structure Of Pgi Glucosephosphate Isomerase
pdb|3NBU|F Chain F, Crystal Structure Of Pgi Glucosephosphate Isomerase
Length = 549
Score = 27.3 bits (59), Expect = 2.7, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 105 KDVMPETDKLAEFAKVLAKLRASGKW 130
KDVMPE + + E K ++ SG+W
Sbjct: 114 KDVMPEVNAVLEKMKTFSEAIISGEW 139
>pdb|1N8T|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase From
Rabbit Muscle
pdb|1N8T|B Chain B, The Crystal Structure Of Phosphoglucose Isomerase From
Rabbit Muscle
Length = 557
Score = 26.9 bits (58), Expect = 3.4, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 105 KDVMPETDKLAEFAKVLAKLRASGKW 130
KDVMPE +K+ + K + SG W
Sbjct: 115 KDVMPEVNKVLDKMKAFCQRVRSGDW 140
>pdb|1DQR|A Chain A, Crystal Structure Of Rabbit Phosphoglucose Isomerase, A
Glycolytic Enzyme That Moonlights As Neuroleukin,
Autocrine Motility Factor, And Differentiation Mediator
pdb|1DQR|B Chain B, Crystal Structure Of Rabbit Phosphoglucose Isomerase, A
Glycolytic Enzyme That Moonlights As Neuroleukin,
Autocrine Motility Factor, And Differentiation Mediator
pdb|1KOJ|A Chain A, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With 5-Phospho-D-Arabinonohydroxamic Acid
pdb|1KOJ|B Chain B, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With 5-Phospho-D-Arabinonohydroxamic Acid
Length = 557
Score = 26.9 bits (58), Expect = 3.4, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 105 KDVMPETDKLAEFAKVLAKLRASGKW 130
KDVMPE +K+ + K + SG W
Sbjct: 115 KDVMPEVNKVLDKMKAFCQRVRSGDW 140
>pdb|1G98|A Chain A, Crystal Structure Analysis Of Rabbit Phosphoglucose
Isomerase Complexed With 5-Phosphoarabinonate, A
Transition State Analogue
pdb|1G98|B Chain B, Crystal Structure Analysis Of Rabbit Phosphoglucose
Isomerase Complexed With 5-Phosphoarabinonate, A
Transition State Analogue
pdb|1HOX|A Chain A, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With Fructose-6-Phosphate
pdb|1HOX|B Chain B, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With Fructose-6-Phosphate
pdb|1HM5|A Chain A, Crystal Structure Analysis Of The Rabbit D-Glucose
6-Phosphate Isomerase (No Ligand Bound)
pdb|1HM5|B Chain B, Crystal Structure Analysis Of The Rabbit D-Glucose
6-Phosphate Isomerase (No Ligand Bound)
pdb|1XTB|A Chain A, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With Sorbitol-6-Phosphate
pdb|1XTB|B Chain B, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With Sorbitol-6-Phosphate
Length = 558
Score = 26.9 bits (58), Expect = 3.4, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 105 KDVMPETDKLAEFAKVLAKLRASGKW 130
KDVMPE +K+ + K + SG W
Sbjct: 116 KDVMPEVNKVLDKMKAFCQRVRSGDW 141
>pdb|1JLH|A Chain A, Human Glucose-6-Phosphate Isomerase
pdb|1JLH|B Chain B, Human Glucose-6-Phosphate Isomerase
pdb|1JLH|C Chain C, Human Glucose-6-Phosphate Isomerase
pdb|1JLH|D Chain D, Human Glucose-6-Phosphate Isomerase
Length = 558
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 105 KDVMPETDKLAEFAKVLAKLRASGKW 130
KDVMPE +K+ + K + SG W
Sbjct: 116 KDVMPEVNKVLDKMKSFCQRVRSGDW 141
>pdb|1IAT|A Chain A, Crystal Structure Of Human Phosphoglucose
IsomeraseNEUROLEUKINAUTOCRINE MOTILITY FACTORMATURATION
FACTOR
Length = 557
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 105 KDVMPETDKLAEFAKVLAKLRASGKW 130
KDVMPE +K+ + K + SG W
Sbjct: 115 KDVMPEVNKVLDKMKSFCQRVRSGDW 140
>pdb|1IRI|A Chain A, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1IRI|B Chain B, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1IRI|C Chain C, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1IRI|D Chain D, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1JIQ|A Chain A, Crystal Structure Of Human Autocrine Motility Factor
pdb|1JIQ|B Chain B, Crystal Structure Of Human Autocrine Motility Factor
pdb|1JIQ|C Chain C, Crystal Structure Of Human Autocrine Motility Factor
pdb|1JIQ|D Chain D, Crystal Structure Of Human Autocrine Motility Factor
pdb|1NUH|A Chain A, The Crystal Structure Of Human Phosphoglucose Isomerase
Complexed With 5-Phosphoarabinonate
Length = 558
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 105 KDVMPETDKLAEFAKVLAKLRASGKW 130
KDVMPE +K+ + K + SG W
Sbjct: 116 KDVMPEVNKVLDKMKSFCQRVRSGDW 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,796,028
Number of Sequences: 62578
Number of extensions: 142537
Number of successful extensions: 299
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 284
Number of HSP's gapped (non-prelim): 14
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)