Query 040121
Match_columns 368
No_of_seqs 252 out of 1146
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 08:05:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040121.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040121hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x4u_A Zinc finger, FYVE domai 99.7 1.5E-17 5E-22 133.2 5.3 62 1-63 16-81 (84)
2 1wfk_A Zinc finger, FYVE domai 99.6 1.1E-16 3.9E-21 129.5 5.6 59 1-63 11-69 (88)
3 1vfy_A Phosphatidylinositol-3- 99.6 2.7E-17 9.4E-22 128.5 1.8 58 1-61 13-70 (73)
4 1z2q_A LM5-1; membrane protein 99.6 6.2E-17 2.1E-21 129.7 2.7 58 1-61 23-80 (84)
5 2yw8_A RUN and FYVE domain-con 99.6 7.8E-17 2.7E-21 128.5 3.3 58 1-63 21-78 (82)
6 1joc_A EEA1, early endosomal a 99.6 1.8E-16 6.3E-21 135.9 3.4 55 1-60 71-125 (125)
7 3t7l_A Zinc finger FYVE domain 99.6 2.6E-16 9E-21 127.7 2.8 58 1-63 22-79 (90)
8 3zyq_A Hepatocyte growth facto 99.6 2.7E-16 9.4E-21 146.5 2.0 61 1-64 166-226 (226)
9 1y02_A CARP2, FYVE-ring finger 99.5 1.8E-14 6.1E-19 123.0 2.8 50 1-61 21-70 (120)
10 2zet_C Melanophilin; complex, 95.9 0.0031 1.1E-07 55.6 2.4 50 1-59 70-119 (153)
11 1zbd_B Rabphilin-3A; G protein 95.7 0.0052 1.8E-07 53.0 3.0 59 1-65 57-115 (134)
12 3vmx_A Voltage-gated hydrogen 90.4 0.61 2.1E-05 33.5 5.6 37 184-220 7-43 (48)
13 3a2a_A Voltage-gated hydrogen 90.2 0.6 2.1E-05 34.5 5.6 40 183-222 13-52 (58)
14 3mpx_A FYVE, rhogef and PH dom 89.5 0.067 2.3E-06 52.6 0.0 17 44-60 416-432 (434)
15 1wfh_A Zinc finger (AN1-like) 89.4 0.19 6.5E-06 38.3 2.4 26 1-30 17-42 (64)
16 1wfl_A Zinc finger protein 216 88.8 0.21 7.1E-06 39.1 2.4 25 2-30 28-52 (74)
17 1dvp_A HRS, hepatocyte growth 88.0 0.11 3.7E-06 47.5 0.3 16 45-60 204-219 (220)
18 1wff_A Riken cDNA 2810002D23 p 87.6 0.29 9.8E-06 39.2 2.5 26 2-30 28-53 (85)
19 3u1c_A Tropomyosin alpha-1 cha 87.6 4 0.00014 33.1 9.5 54 192-246 41-95 (101)
20 1wg2_A Zinc finger (AN1-like) 86.2 0.4 1.4E-05 36.5 2.5 26 1-30 17-42 (64)
21 1wfp_A Zinc finger (AN1-like) 85.0 0.47 1.6E-05 37.1 2.4 25 2-30 28-52 (74)
22 2eqb_B RAB guanine nucleotide 84.3 3.6 0.00012 33.6 7.5 48 202-249 47-95 (97)
23 2csz_A Synaptotagmin-like prot 80.8 0.76 2.6E-05 36.0 2.2 47 1-57 27-73 (76)
24 3qh9_A Liprin-beta-2; coiled-c 79.7 9.1 0.00031 30.3 8.0 46 188-247 19-64 (81)
25 3u59_A Tropomyosin beta chain; 78.5 16 0.00054 29.3 9.5 55 192-246 41-95 (101)
26 1z60_A TFIIH basal transcripti 76.0 0.47 1.6E-05 35.4 -0.3 28 2-31 18-45 (59)
27 2yy0_A C-MYC-binding protein; 74.0 4.1 0.00014 29.6 4.3 29 191-219 22-50 (53)
28 3lrq_A E3 ubiquitin-protein li 73.6 0.98 3.4E-05 35.7 1.0 45 1-58 24-68 (100)
29 1jm7_B BARD1, BRCA1-associated 73.0 2.3 8E-05 34.3 3.1 31 1-35 24-54 (117)
30 1x4w_A Hypothetical protein FL 72.8 1.1 3.7E-05 34.4 0.9 27 2-30 18-45 (67)
31 1c1g_A Tropomyosin; contractIl 72.3 25 0.00085 30.3 9.9 30 184-213 2-31 (284)
32 3ljm_A Coil Ser L9C; de novo d 70.4 5.5 0.00019 25.4 3.7 23 197-219 3-25 (31)
33 1iym_A EL5; ring-H2 finger, ub 69.7 3.2 0.00011 28.5 2.8 34 1-35 7-40 (55)
34 4etp_A Kinesin-like protein KA 69.5 12 0.00039 37.3 7.8 55 192-253 7-61 (403)
35 2eqb_B RAB guanine nucleotide 69.2 15 0.00052 29.9 7.1 52 191-249 8-59 (97)
36 2jee_A YIIU; FTSZ, septum, coi 68.8 8.6 0.00029 30.4 5.3 32 184-215 30-61 (81)
37 2dq0_A Seryl-tRNA synthetase; 68.7 17 0.00058 36.7 9.0 23 232-254 85-107 (455)
38 2ckl_B Ubiquitin ligase protei 68.4 1.2 4E-05 38.2 0.3 45 1-58 56-100 (165)
39 2gd5_A Charged multivesicular 68.3 35 0.0012 29.8 10.0 41 183-223 9-49 (179)
40 2ecm_A Ring finger and CHY zin 68.0 2.8 9.6E-05 28.7 2.2 35 1-36 7-41 (55)
41 3oja_B Anopheles plasmodium-re 67.9 24 0.00081 35.6 9.9 14 241-254 569-582 (597)
42 3i00_A HIP-I, huntingtin-inter 67.3 19 0.00066 30.2 7.6 49 181-233 15-74 (120)
43 2e72_A POGO transposable eleme 66.7 1 3.4E-05 32.5 -0.4 25 1-26 14-40 (49)
44 1ic2_A Tropomyosin alpha chain 65.7 20 0.00067 27.6 6.9 35 192-226 38-72 (81)
45 1wle_A Seryl-tRNA synthetase; 64.9 35 0.0012 35.0 10.5 23 193-215 82-104 (501)
46 4emc_A Monopolin complex subun 64.8 30 0.001 31.3 8.8 38 181-218 20-57 (190)
47 3l11_A E3 ubiquitin-protein li 63.8 2.6 8.9E-05 33.7 1.5 46 1-60 17-62 (115)
48 2ect_A Ring finger protein 126 63.7 4.7 0.00016 29.8 2.9 48 1-60 17-64 (78)
49 1jcd_A Major outer membrane li 61.9 20 0.0007 25.9 5.8 37 192-232 8-44 (52)
50 2yur_A Retinoblastoma-binding 61.3 4.2 0.00014 30.1 2.2 32 1-36 17-48 (74)
51 3qne_A Seryl-tRNA synthetase, 61.3 32 0.0011 35.2 9.4 22 233-254 88-109 (485)
52 2ct2_A Tripartite motif protei 60.9 2.9 9.8E-05 31.4 1.2 49 1-57 17-65 (88)
53 2v4h_A NF-kappa-B essential mo 60.5 27 0.00094 29.0 7.1 48 196-247 25-72 (110)
54 1ses_A Seryl-tRNA synthetase; 59.2 22 0.00075 35.4 7.7 26 229-254 77-102 (421)
55 4ayc_A E3 ubiquitin-protein li 59.1 2.3 7.8E-05 35.5 0.4 30 1-35 55-84 (138)
56 2egp_A Tripartite motif-contai 59.0 2.9 0.0001 30.8 1.0 49 2-58 15-63 (79)
57 3lss_A Seryl-tRNA synthetase; 57.9 37 0.0013 34.7 9.2 24 193-216 49-72 (484)
58 2djb_A Polycomb group ring fin 57.6 3.7 0.00013 30.1 1.3 31 1-35 17-47 (72)
59 2ecw_A Tripartite motif-contai 57.4 2.6 8.9E-05 31.2 0.4 49 1-58 21-69 (85)
60 2ecv_A Tripartite motif-contai 57.4 5.2 0.00018 29.5 2.1 50 1-59 21-70 (85)
61 2y43_A E3 ubiquitin-protein li 56.9 3.3 0.00011 32.2 1.0 44 1-58 24-67 (99)
62 1jm7_A BRCA1, breast cancer ty 56.7 4.1 0.00014 32.0 1.5 45 1-57 23-67 (112)
63 1bor_A Transcription factor PM 56.6 7.2 0.00025 27.4 2.7 28 1-33 8-35 (56)
64 2a20_A Regulating synaptic mem 56.4 7.9 0.00027 29.0 2.9 49 1-57 11-60 (62)
65 2ecn_A Ring finger protein 141 55.9 3.8 0.00013 29.6 1.1 45 1-61 17-61 (70)
66 2ckl_A Polycomb group ring fin 55.6 3.5 0.00012 32.7 0.9 44 1-58 17-60 (108)
67 3na7_A HP0958; flagellar bioge 55.6 71 0.0024 29.3 10.0 21 237-257 157-177 (256)
68 1twf_L ABC10-alpha, DNA-direct 54.9 5 0.00017 30.7 1.7 9 2-10 31-39 (70)
69 1t1h_A Gspef-atpub14, armadill 53.7 3.6 0.00012 30.4 0.7 30 1-35 10-39 (78)
70 1lwu_C Fibrinogen gamma chain; 53.7 38 0.0013 32.9 8.0 32 188-219 5-36 (323)
71 4dci_A Uncharacterized protein 53.4 96 0.0033 26.9 9.8 57 197-257 38-110 (150)
72 1e4u_A Transcriptional repress 52.9 4.2 0.00014 31.1 0.9 31 1-33 13-44 (78)
73 3fl2_A E3 ubiquitin-protein li 52.3 4.1 0.00014 33.1 0.8 44 1-58 54-97 (124)
74 1x4v_A Hypothetical protein LO 52.1 7.1 0.00024 29.4 2.1 24 2-29 15-40 (63)
75 2yy0_A C-MYC-binding protein; 52.0 11 0.00037 27.3 3.0 33 181-213 19-51 (53)
76 2jrp_A Putative cytoplasmic pr 51.9 5.5 0.00019 31.5 1.5 32 1-33 4-40 (81)
77 2ysj_A Tripartite motif-contai 51.7 4.4 0.00015 28.7 0.8 31 1-36 22-52 (63)
78 1chc_A Equine herpes virus-1 r 51.1 6.7 0.00023 28.0 1.8 45 1-59 7-51 (68)
79 3tul_A Cell invasion protein S 50.7 35 0.0012 29.8 6.5 70 184-253 23-92 (158)
80 3jsv_C NF-kappa-B essential mo 50.5 62 0.0021 26.2 7.5 47 197-247 4-50 (94)
81 2kiz_A E3 ubiquitin-protein li 50.3 5 0.00017 28.9 0.9 34 1-36 16-49 (69)
82 2ysl_A Tripartite motif-contai 50.2 4.7 0.00016 29.2 0.8 30 1-35 22-51 (73)
83 2d8t_A Dactylidin, ring finger 49.7 4.5 0.00015 29.5 0.6 44 1-59 17-60 (71)
84 2csy_A Zinc finger protein 183 49.7 5.1 0.00017 29.9 1.0 30 1-35 17-46 (81)
85 3mq7_A Bone marrow stromal ant 48.7 28 0.00096 29.3 5.4 34 204-241 73-106 (121)
86 1x4j_A Ring finger protein 38; 48.5 3.6 0.00012 30.3 -0.1 33 2-36 26-58 (75)
87 2ecj_A Tripartite motif-contai 48.4 5.3 0.00018 27.5 0.8 30 1-35 17-46 (58)
88 2c2l_A CHIP, carboxy terminus 47.2 7.5 0.00026 35.0 1.9 30 1-35 210-239 (281)
89 4gzn_C ZFP-57, zinc finger pro 46.5 7.6 0.00026 27.9 1.4 27 2-28 7-44 (60)
90 2dq3_A Seryl-tRNA synthetase; 46.3 15 0.0005 36.7 4.0 22 233-254 78-106 (425)
91 2zqm_A Prefoldin beta subunit 45.7 38 0.0013 26.9 5.7 41 182-222 71-111 (117)
92 3viq_B Mating-type switching p 45.5 44 0.0015 26.5 5.8 56 199-256 5-62 (85)
93 2dfs_A Myosin-5A; myosin-V, in 45.3 75 0.0026 35.5 9.8 18 197-214 986-1003(1080)
94 3oja_B Anopheles plasmodium-re 44.7 34 0.0011 34.4 6.4 33 193-225 461-493 (597)
95 1wys_A Riken cDNA 2310008M20 p 44.7 12 0.00042 29.0 2.4 25 2-30 17-43 (75)
96 3u06_A Protein claret segregat 44.0 50 0.0017 32.9 7.4 56 191-253 6-61 (412)
97 3cvf_A Homer-3, homer protein 43.9 1.1E+02 0.0038 23.8 7.8 60 188-250 6-65 (79)
98 1v87_A Deltex protein 2; ring- 43.3 4.3 0.00015 32.2 -0.4 36 19-59 58-93 (114)
99 2ea6_A Ring finger protein 4; 42.8 4.6 0.00016 28.7 -0.3 36 1-36 17-54 (69)
100 4emc_A Monopolin complex subun 42.2 1.1E+02 0.0039 27.6 8.7 30 192-221 24-53 (190)
101 2ep4_A Ring finger protein 24; 42.2 7.6 0.00026 28.3 0.8 48 1-60 17-64 (74)
102 3iv1_A Tumor susceptibility ge 42.1 49 0.0017 25.8 5.5 50 197-253 27-76 (78)
103 2gmg_A Hypothetical protein PF 42.1 11 0.00037 31.2 1.8 14 13-26 64-77 (105)
104 2ecy_A TNF receptor-associated 41.8 6.1 0.00021 28.3 0.3 29 2-35 18-46 (66)
105 2l0b_A E3 ubiquitin-protein li 41.7 4 0.00014 31.6 -0.8 32 2-35 43-74 (91)
106 3nmd_A CGMP dependent protein 41.4 52 0.0018 25.3 5.5 23 197-219 42-64 (72)
107 2lv2_A Insulinoma-associated p 40.7 11 0.00036 29.1 1.5 16 14-29 26-41 (85)
108 2fup_A Hypothetical protein PA 40.6 1.3E+02 0.0044 24.8 8.5 25 227-251 86-110 (157)
109 1wle_A Seryl-tRNA synthetase; 40.2 95 0.0033 31.7 8.9 58 196-253 78-146 (501)
110 1wim_A KIAA0161 protein; ring 40.0 8.7 0.0003 29.6 0.9 34 1-36 7-40 (94)
111 2lce_A B-cell lymphoma 6 prote 40.0 17 0.00057 25.7 2.4 9 2-10 20-28 (74)
112 1gd2_E Transcription factor PA 39.5 19 0.00064 27.5 2.7 13 236-248 56-68 (70)
113 1a93_B MAX protein, coiled coi 39.3 38 0.0013 22.6 3.8 27 186-212 5-31 (34)
114 1z6u_A NP95-like ring finger p 39.3 8.9 0.0003 32.7 0.9 30 1-35 80-109 (150)
115 2f23_A Anti-cleavage anti-GREA 39.0 40 0.0014 28.8 5.1 57 197-253 12-69 (156)
116 1fxk_A Prefoldin; archaeal pro 38.7 41 0.0014 26.3 4.8 40 182-221 66-105 (107)
117 3uk3_C Zinc finger protein 217 38.5 19 0.00064 23.8 2.4 10 1-10 6-15 (57)
118 1vd4_A Transcription initiatio 38.1 8.7 0.0003 26.9 0.6 14 15-28 13-26 (62)
119 3j20_Y 30S ribosomal protein S 37.9 13 0.00043 26.5 1.4 9 16-24 37-45 (50)
120 4abm_A Charged multivesicular 37.6 83 0.0028 24.3 6.2 44 197-240 8-52 (79)
121 1wfe_A Riken cDNA 2310008M20 p 37.4 12 0.00041 29.6 1.4 25 2-30 28-54 (86)
122 3ztg_A E3 ubiquitin-protein li 37.3 7.1 0.00024 29.7 0.0 30 2-35 16-45 (92)
123 2adr_A ADR1; transcription reg 36.9 20 0.0007 24.0 2.4 10 1-10 4-13 (60)
124 3qne_A Seryl-tRNA synthetase, 36.7 69 0.0024 32.7 7.2 22 232-253 80-101 (485)
125 1bbo_A Human enhancer-binding 36.7 21 0.00071 23.6 2.4 10 1-10 3-12 (57)
126 2aze_B Transcription factor E2 36.6 49 0.0017 26.9 5.0 33 190-222 8-40 (106)
127 3hnw_A Uncharacterized protein 36.6 1.9E+02 0.0066 24.4 9.2 54 195-249 75-129 (138)
128 1go4_E MAD1 (mitotic arrest de 36.6 1.3E+02 0.0044 24.5 7.4 69 182-253 13-91 (100)
129 3ng2_A RNF4, snurf, ring finge 36.4 5.7 0.0002 28.5 -0.6 36 1-36 12-49 (71)
130 1uii_A Geminin; human, DNA rep 35.9 86 0.0029 24.8 6.0 34 192-225 43-76 (83)
131 2ct7_A Ring finger protein 31; 35.3 14 0.00048 28.6 1.4 32 2-33 28-60 (86)
132 1ci6_A Transcription factor AT 35.3 78 0.0027 23.2 5.5 23 193-215 35-57 (63)
133 2ocy_A RAB guanine nucleotide 34.9 2.1E+02 0.0073 24.8 9.1 46 204-249 81-141 (154)
134 2wt7_A Proto-oncogene protein 34.4 47 0.0016 24.3 4.2 21 193-213 28-48 (63)
135 3lss_A Seryl-tRNA synthetase; 34.4 95 0.0032 31.7 7.8 27 197-223 46-72 (484)
136 3mq7_A Bone marrow stromal ant 34.4 1.7E+02 0.006 24.5 8.0 7 190-196 27-33 (121)
137 2zqm_A Prefoldin beta subunit 34.4 95 0.0033 24.5 6.4 19 235-253 82-100 (117)
138 2l5g_B Putative uncharacterize 34.2 78 0.0027 22.0 4.9 28 193-220 7-34 (42)
139 2yu4_A E3 SUMO-protein ligase 33.8 12 0.0004 29.2 0.8 31 1-36 9-40 (94)
140 1wlq_A Geminin; coiled-coil; 2 33.7 1.1E+02 0.0038 24.2 6.3 47 180-226 23-69 (83)
141 1t2k_D Cyclic-AMP-dependent tr 33.5 46 0.0016 24.1 4.0 18 197-214 31-48 (61)
142 2dq0_A Seryl-tRNA synthetase; 33.3 91 0.0031 31.3 7.4 24 230-253 76-99 (455)
143 3a7p_A Autophagy protein 16; c 33.3 1E+02 0.0036 26.9 6.8 71 184-254 64-145 (152)
144 1fxk_A Prefoldin; archaeal pro 33.2 1.3E+02 0.0044 23.3 6.9 28 193-220 13-40 (107)
145 1i84_S Smooth muscle myosin he 33.1 1.4E+02 0.0047 33.5 9.5 14 239-252 929-942 (1184)
146 2xeu_A Ring finger protein 4; 32.9 6.5 0.00022 27.4 -0.8 36 1-36 5-42 (64)
147 1ez3_A Syntaxin-1A; three heli 32.9 1E+02 0.0034 24.7 6.4 28 193-220 10-37 (127)
148 1ses_A Seryl-tRNA synthetase; 32.9 46 0.0016 33.1 5.1 24 230-253 71-94 (421)
149 2wt7_B Transcription factor MA 32.6 76 0.0026 25.4 5.3 30 188-217 55-84 (90)
150 1g25_A CDK-activating kinase a 32.6 7.9 0.00027 27.6 -0.4 34 1-35 5-39 (65)
151 2ve7_A Kinetochore protein HEC 32.5 61 0.0021 31.0 5.7 25 195-219 185-209 (315)
152 1i84_S Smooth muscle myosin he 32.2 1.2E+02 0.004 34.0 8.7 12 242-253 925-936 (1184)
153 3htk_A Structural maintenance 31.9 1.3E+02 0.0046 21.1 8.4 44 197-247 14-57 (60)
154 2fxo_A Myosin heavy chain, car 31.8 2.2E+02 0.0074 23.5 9.9 8 245-252 84-91 (129)
155 3frt_A Charged multivesicular 31.6 2.9E+02 0.0098 25.1 9.8 71 183-253 9-87 (218)
156 2e7s_A RAB guanine nucleotide 31.5 1.2E+02 0.0041 25.9 6.8 50 204-253 69-119 (135)
157 3knv_A TNF receptor-associated 31.3 14 0.00046 31.2 0.8 44 1-58 33-76 (141)
158 1rmd_A RAG1; V(D)J recombinati 31.1 15 0.0005 29.3 0.9 31 1-36 25-55 (116)
159 3hct_A TNF receptor-associated 30.7 15 0.00051 29.5 0.9 31 1-36 20-50 (118)
160 3vk6_A E3 ubiquitin-protein li 30.4 5.1 0.00017 32.9 -1.9 49 2-63 4-52 (101)
161 2ctd_A Zinc finger protein 512 30.0 19 0.00066 27.6 1.5 10 17-26 35-44 (96)
162 1x5w_A Zinc finger protein 64, 29.9 22 0.00074 24.8 1.6 12 16-27 9-20 (70)
163 3vkg_A Dynein heavy chain, cyt 29.8 1.6E+02 0.0053 37.1 9.8 29 197-225 1936-1964(3245)
164 3s4r_A Vimentin; alpha-helix, 29.8 2E+02 0.007 22.6 9.4 19 197-215 25-43 (93)
165 2d9h_A Zinc finger protein 692 29.6 21 0.00071 25.4 1.5 9 2-10 10-18 (78)
166 2w83_C C-JUN-amino-terminal ki 29.5 42 0.0014 26.2 3.2 13 197-209 39-51 (77)
167 2gww_B IPAA; protein complex, 29.5 25 0.00085 22.2 1.6 25 225-249 5-29 (30)
168 2wvr_A Geminin; DNA replicatio 29.1 1.5E+02 0.0052 27.1 7.3 46 180-225 100-145 (209)
169 2jne_A Hypothetical protein YF 28.8 21 0.0007 29.3 1.4 23 2-25 35-57 (101)
170 2gqj_A Zinc finger protein KIA 28.7 15 0.00052 27.9 0.6 12 16-27 24-35 (98)
171 1x6e_A Zinc finger protein 24; 28.3 24 0.0008 24.8 1.6 13 15-27 13-25 (72)
172 2kr4_A Ubiquitin conjugation f 28.0 18 0.00061 27.6 0.9 29 2-35 17-45 (85)
173 2dq3_A Seryl-tRNA synthetase; 27.9 86 0.0029 31.1 6.1 20 234-253 72-91 (425)
174 4hc9_A Trans-acting T-cell-spe 27.9 27 0.00093 28.9 2.1 15 1-15 7-21 (115)
175 2dfs_A Myosin-5A; myosin-V, in 27.7 37 0.0013 38.0 3.7 17 234-250 981-997 (1080)
176 3ryc_E Stathmin-4; alpha-tubul 27.4 3E+02 0.01 23.7 11.6 54 193-253 60-121 (143)
177 2kre_A Ubiquitin conjugation f 27.3 17 0.00057 28.9 0.6 29 2-35 32-60 (100)
178 3cc2_Z 50S ribosomal protein L 27.0 17 0.0006 30.4 0.7 12 17-28 79-90 (116)
179 2fc7_A ZZZ3 protein; structure 26.9 31 0.0011 26.8 2.1 28 2-31 24-55 (82)
180 2ctu_A Zinc finger protein 483 26.9 20 0.00069 24.6 1.0 12 16-27 18-29 (73)
181 2eps_A POZ-, at HOOK-, and zin 26.7 24 0.00082 23.5 1.3 14 15-28 11-24 (54)
182 2m0e_A Zinc finger and BTB dom 26.4 24 0.00083 19.2 1.1 13 16-28 2-14 (29)
183 1hjb_A Ccaat/enhancer binding 26.4 1.1E+02 0.0038 24.1 5.3 53 197-256 27-79 (87)
184 2cot_A Zinc finger protein 435 26.4 34 0.0012 24.2 2.2 11 16-26 18-28 (77)
185 2fiy_A Protein FDHE homolog; F 26.3 16 0.00054 35.3 0.4 62 1-63 184-268 (309)
186 2kvh_A Zinc finger and BTB dom 26.3 24 0.00083 19.4 1.1 14 15-28 2-15 (27)
187 3fx7_A Putative uncharacterize 26.3 2.5E+02 0.0087 22.5 8.9 59 183-251 15-84 (94)
188 1d4u_A Nucleotide excision rep 26.2 34 0.0012 28.4 2.3 13 45-57 23-35 (111)
189 2p4v_A Transcription elongatio 25.9 1.5E+02 0.0052 25.3 6.6 57 197-253 11-69 (158)
190 3h0g_L DNA-directed RNA polyme 25.8 37 0.0013 25.5 2.3 21 2-23 24-45 (63)
191 2efr_A General control protein 25.8 3E+02 0.01 23.8 8.5 53 197-249 37-89 (155)
192 1nkp_A C-MYC, MYC proto-oncoge 25.7 84 0.0029 24.5 4.5 30 184-213 55-84 (88)
193 1wd2_A Ariadne-1 protein homol 25.7 46 0.0016 24.2 2.8 34 1-34 8-44 (60)
194 1nkp_B MAX protein, MYC proto- 25.6 76 0.0026 24.1 4.2 22 197-218 56-77 (83)
195 1pft_A TFIIB, PFTFIIBN; N-term 25.1 19 0.00065 24.9 0.5 7 49-55 25-31 (50)
196 1gqe_A Release factor 2, RF2; 24.4 4.1E+02 0.014 26.1 10.1 50 210-259 72-124 (365)
197 1ard_A Yeast transcription fac 24.3 26 0.00087 19.3 0.9 12 16-27 2-13 (29)
198 1m1j_B Fibrinogen beta chain; 24.1 2.6E+02 0.009 28.4 8.9 13 182-194 87-99 (464)
199 2m0d_A Zinc finger and BTB dom 24.1 27 0.00092 19.2 1.0 14 15-28 2-15 (30)
200 1rik_A E6APC1 peptide; E6-bind 24.0 28 0.00097 19.2 1.1 13 16-28 2-14 (29)
201 2ve7_A Kinetochore protein HEC 23.9 57 0.002 31.2 3.8 48 203-253 186-233 (315)
202 2kvf_A Zinc finger and BTB dom 23.8 28 0.00097 19.1 1.1 14 15-28 2-15 (28)
203 3htk_C E3 SUMO-protein ligase 23.5 24 0.00081 33.6 1.0 25 2-30 184-208 (267)
204 3ub6_A Chemoreceptor TLPB; hom 23.3 2.2E+02 0.0074 24.4 7.2 26 334-359 118-146 (181)
205 1m1j_B Fibrinogen beta chain; 23.3 1.3E+02 0.0044 30.6 6.4 12 242-253 166-177 (464)
206 2xdj_A Uncharacterized protein 22.5 1.7E+02 0.0058 22.8 5.6 31 190-220 29-59 (83)
207 1m1j_C Fibrinogen gamma chain; 22.4 3E+02 0.01 27.3 8.9 10 211-220 83-92 (409)
208 1wil_A KIAA1045 protein; ring 22.3 44 0.0015 26.7 2.2 30 1-33 17-46 (89)
209 4etp_A Kinesin-like protein KA 22.3 1.4E+02 0.0048 29.4 6.4 44 183-226 5-48 (403)
210 2d8v_A Zinc finger FYVE domain 22.3 35 0.0012 26.0 1.6 24 2-31 11-35 (67)
211 1lwu_C Fibrinogen gamma chain; 22.2 92 0.0031 30.2 4.9 35 189-223 18-54 (323)
212 1t6f_A Geminin; coiled-coil, c 22.2 1.1E+02 0.0039 20.5 3.8 29 194-222 6-34 (37)
213 2m0f_A Zinc finger and BTB dom 22.2 31 0.0011 18.8 1.0 13 16-28 2-14 (29)
214 1s94_A S-syntaxin; three helix 22.0 1.4E+02 0.0049 25.5 5.7 31 193-223 41-71 (180)
215 2ct1_A Transcriptional repress 22.0 39 0.0013 23.9 1.8 12 16-27 15-26 (77)
216 1gax_A Valrs, valyl-tRNA synth 21.9 93 0.0032 33.8 5.4 56 194-249 799-861 (862)
217 3f6n_A Virion-associated prote 21.8 3.4E+02 0.012 22.9 7.6 9 238-246 49-57 (129)
218 2wbt_A B-129; zinc finger; 2.7 21.8 30 0.001 27.0 1.2 10 17-26 75-84 (129)
219 3efg_A Protein SLYX homolog; x 21.8 2.1E+02 0.0072 21.9 6.0 49 192-254 11-59 (78)
220 1yop_A KTI11P; zinc finger, me 21.6 28 0.00096 27.4 0.9 9 17-26 24-32 (83)
221 3dpl_R Ring-box protein 1; ubi 21.5 31 0.0011 27.8 1.2 35 1-36 39-87 (106)
222 3vkg_A Dynein heavy chain, cyt 21.4 2E+02 0.0067 36.2 8.5 18 236-253 2027-2044(3245)
223 2lvu_A Zinc finger and BTB dom 26.7 20 0.00069 19.6 0.0 13 16-28 2-14 (26)
224 2dmd_A Zinc finger protein 64, 21.2 41 0.0014 24.5 1.7 10 1-10 10-19 (96)
225 2dmi_A Teashirt homolog 3; zin 21.1 50 0.0017 25.1 2.3 6 50-55 82-87 (115)
226 3hcs_A TNF receptor-associated 21.0 27 0.00093 29.6 0.8 30 1-35 20-49 (170)
227 1klr_A Zinc finger Y-chromosom 21.0 33 0.0011 18.8 0.9 13 16-28 2-14 (30)
228 3brv_B NF-kappa-B essential mo 20.8 2.7E+02 0.0092 21.3 6.2 38 184-221 22-59 (70)
229 4ic3_A E3 ubiquitin-protein li 20.8 26 0.00089 25.8 0.6 28 1-33 26-54 (74)
230 2f42_A STIP1 homology and U-bo 20.8 29 0.00098 30.8 0.9 29 2-35 109-137 (179)
231 4a0k_B E3 ubiquitin-protein li 20.8 21 0.00071 29.6 0.0 27 21-57 83-109 (117)
232 2ecg_A Baculoviral IAP repeat- 20.8 34 0.0012 25.1 1.2 27 1-32 27-54 (75)
233 3m48_A General control protein 20.8 71 0.0024 21.1 2.5 18 184-201 10-27 (33)
234 3u06_A Protein claret segregat 20.6 1.6E+02 0.0054 29.2 6.4 40 183-222 5-44 (412)
235 2p22_A Suppressor protein STP2 20.5 1.2E+02 0.0042 26.9 5.0 36 183-218 44-79 (174)
236 2jmo_A Parkin; IBR, E3 ligase, 20.5 40 0.0014 25.7 1.6 29 5-33 33-67 (80)
237 1paa_A Yeast transcription fac 20.5 34 0.0012 19.0 0.9 13 16-28 2-14 (30)
238 2kdx_A HYPA, hydrogenase/ureas 20.4 39 0.0013 27.5 1.6 11 16-26 73-83 (119)
239 3jyw_9 60S ribosomal protein L 20.3 53 0.0018 25.3 2.2 6 2-7 29-34 (72)
240 3qfl_A MLA10; coiled-coil, (CC 20.3 3.2E+02 0.011 21.7 7.2 61 186-252 7-70 (115)
241 2kvg_A Zinc finger and BTB dom 20.1 30 0.001 19.2 0.6 13 15-27 2-14 (27)
242 1gu4_A CAAT/enhancer binding p 20.1 1.8E+02 0.0063 22.4 5.3 16 197-212 27-42 (78)
No 1
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-17 Score=133.23 Aligned_cols=62 Identities=31% Similarity=0.545 Sum_probs=54.3
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCC----CCCCcccccchHHHhhhccC
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPN----PNKPYRICDNCFSKLRKAFH 63 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~----~~kpvRVC~~C~~~L~~~~e 63 (368)
.|+.|+.+|+ |++||||||+||.|||+.|+.++++++.++.. ..+++|||+.||..|.....
T Consensus 16 ~C~~C~~~F~-~~~RrHHCR~CG~vfC~~Cs~~~~~l~~~g~~~p~~~~~~~RVC~~C~~~l~~~~~ 81 (84)
T 1x4u_A 16 NCTGCSATFS-VLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQTLSKSGP 81 (84)
T ss_dssp SCSSSCCCCC-SSSCCEECSSSCCEECTTTSCEEECSTTTSCCCSSCSSCCEEECHHHHHHHHSCCS
T ss_pred cCcCcCCccc-cchhhhhhcCCCcEEChhhcCCceecccccccCccccCCccEECHHHHHHHhccCC
Confidence 4999999999 88999999999999999999999998877642 14789999999999987533
No 2
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=99.64 E-value=1.1e-16 Score=129.53 Aligned_cols=59 Identities=25% Similarity=0.546 Sum_probs=53.6
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhhccC
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKAFH 63 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~~~e 63 (368)
.|+.|+.+|+ +++||||||+||.|||..|+.++++++.++ .+++|||+.||..|.....
T Consensus 11 ~C~~C~~~F~-~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g---~~~~RVC~~C~~~l~~~~~ 69 (88)
T 1wfk_A 11 RCYGCAVKFT-LFKKEYGCKNCGRAFCNGCLSFSALVPRAG---NTQQKVCKQCHTILTRGSS 69 (88)
T ss_dssp BCTTTCCBCC-SSSCEEECSSSCCEEETTTSCEEEEETTTT---SEEEEECHHHHHHHHHCCC
T ss_pred CCcCcCCccc-CccccccCCCCCCEEChhHcCCceeccccC---CCcCEECHHHHHHHHhccc
Confidence 4999999999 889999999999999999999999888764 5899999999999988644
No 3
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=99.64 E-value=2.7e-17 Score=128.50 Aligned_cols=58 Identities=28% Similarity=0.606 Sum_probs=52.5
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhhc
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKA 61 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~~ 61 (368)
.|+.|+++|+ +++||||||+||+|||+.|+.++++++.++. .+++|||+.||..|...
T Consensus 13 ~C~~C~~~F~-~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~--~~~~RVC~~C~~~l~~i 70 (73)
T 1vfy_A 13 ACMICSKKFS-LLNRKHHCRSCGGVFCQEHSSNSIPLPDLGI--YEPVRVCDSCFEDYEFI 70 (73)
T ss_dssp BCTTTCCBCB-TTBCCEECTTTCCEECGGGSCEEEEEGGGTE--EEEEEECHHHHHHHHHH
T ss_pred cccCCCCccC-CccccccCCCCCEEEcccccCCeEEcccCCC--CCCCEECHHHHHHHHHH
Confidence 4999999999 8899999999999999999999998887753 58999999999998764
No 4
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=99.63 E-value=6.2e-17 Score=129.68 Aligned_cols=58 Identities=31% Similarity=0.674 Sum_probs=52.3
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhhc
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKA 61 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~~ 61 (368)
.|+.|+++|+ +++||||||+||.|||..|+.++++++.++. .+++|||+.||..|...
T Consensus 23 ~C~~C~~~Fs-~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~--~~~~RVC~~C~~~l~~~ 80 (84)
T 1z2q_A 23 ACNGCGCVFT-TTVRRHHCRNCGYVLCGDCSRHRAAIPMRGI--TEPERVCDACYLALRSS 80 (84)
T ss_dssp BCTTTCCBCC-TTSCCEECTTTCCEECTGGGCCEEEETTTTE--EEEEECCHHHHHHHHTS
T ss_pred CCcCcCCccc-cchhcccccCCCcEEChHHhCCeEeccCCCC--CCCCEECHHHHHHHhhc
Confidence 4999999999 8899999999999999999999988876642 69999999999999764
No 5
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=99.63 E-value=7.8e-17 Score=128.54 Aligned_cols=58 Identities=33% Similarity=0.695 Sum_probs=50.3
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhhccC
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKAFH 63 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~~~e 63 (368)
.|+.|+.+|+ +++||||||+||.|||+.|+.++++++. ..+++|||+.||..|.....
T Consensus 21 ~C~~C~~~Fs-~~~RrHHCR~CG~v~C~~Cs~~~~~l~~----~~~~~RVC~~C~~~l~~~~~ 78 (82)
T 2yw8_A 21 HCRQCEKEFS-ISRRKHHCRNCGHIFCNTCSSNELALPS----YPKPVRVCDSCHTLLLQRCS 78 (82)
T ss_dssp BCTTTCCBCB-TTBCCEECTTTCCEECSGGGCEEECCTT----CSSCEEECHHHHHHTTC---
T ss_pred cccCcCCccc-CccccccCCCCCCEEChHHhCCeeecCC----CCCcCEECHHHHHHHHHhcc
Confidence 4999999999 8999999999999999999999887764 36999999999999977544
No 6
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=99.61 E-value=1.8e-16 Score=135.86 Aligned_cols=55 Identities=36% Similarity=0.794 Sum_probs=49.7
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhh
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRK 60 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~ 60 (368)
.|+.|+.+|+ +++||||||+||.|||+.|+.+++++|. ..+|+|||+.||..|++
T Consensus 71 ~C~~C~~~Fs-~~~RrHHCR~CG~vfC~~Cs~~~~~~p~----~~~p~RVC~~C~~~l~g 125 (125)
T 1joc_A 71 NCMACGKGFS-VTVRRHHCRQCGNIFCAECSAKNALTPS----SKKPVRVCDACFNDLQG 125 (125)
T ss_dssp BCTTTCCBCC-SSSCCEECTTTCCEECGGGSCEEECCTT----CSSCEEECHHHHHHTTC
T ss_pred CCcCcCCccc-cccccccCCCCCeEEChHHhCCccccCC----CCCCCEeCHHHHHHhcC
Confidence 4999999999 8899999999999999999999887663 37999999999999864
No 7
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=99.59 E-value=2.6e-16 Score=127.69 Aligned_cols=58 Identities=29% Similarity=0.659 Sum_probs=51.8
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhhccC
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKAFH 63 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~~~e 63 (368)
.|+.|+.+|+ +++||||||+||.|||..|+.+++.++.+ .+++|||+.||..|.....
T Consensus 22 ~C~~C~~~F~-~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~----~~~~RVC~~C~~~l~~~~~ 79 (90)
T 3t7l_A 22 NCMNCQVKFT-FTKRRHHCRACGKVFCGVCCNRKCKLQYL----EKEARVCVVCYETISKAQA 79 (90)
T ss_dssp BCTTTCCBCC-SSSCCEECTTTCCEECGGGSCEEEEETTT----TEEEEECHHHHHHHHHHC-
T ss_pred cCcCCCCccc-chhhCccccCCCCEECCcccCCeeecCCC----CCCCeECHHHHHHHHHHhh
Confidence 4999999999 88999999999999999999999877643 5899999999999988755
No 8
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=99.58 E-value=2.7e-16 Score=146.49 Aligned_cols=61 Identities=26% Similarity=0.628 Sum_probs=52.4
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhhccCC
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKAFHT 64 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~~~e~ 64 (368)
.|+.|+.+|+ +++||||||+||.|||+.|+.+++.+|.++ ..+++|||+.||..|.+..||
T Consensus 166 ~C~~C~~~F~-~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~--~~~~~RVC~~C~~~l~~~~eg 226 (226)
T 3zyq_A 166 ECHRCRVQFG-VMTRKHHCRACGQIFCGKCSSKYSTIPKFG--IEKEVRVCEPCYEQLNRKAEG 226 (226)
T ss_dssp BCTTTCCBCB-TTBCCEECTTTCCEECTTTCCEEEEEGGGT--EEEEEEECHHHHHHHCC----
T ss_pred CCcCcCCCCC-ccccccccCCCcCEeChhhcCCcccCCCCC--CCCCCEeCHHHHHHhhhhccC
Confidence 4999999999 889999999999999999999998888764 368999999999999887664
No 9
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=99.45 E-value=1.8e-14 Score=123.03 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=42.9
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhhc
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKA 61 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~~ 61 (368)
.|+.|+.+|+ +++||||||+||.|||+.|+.++++ ++|||+.||..+...
T Consensus 21 ~C~~C~~~Fs-~~~RkHHCR~CG~ifC~~Cs~~~~~----------~vRVC~~C~~~~~~~ 70 (120)
T 1y02_A 21 SCKSCGAHFA-NTARKQTCLDCKKNFCMTCSSQVGN----------GPRLCLLCQRFRATA 70 (120)
T ss_dssp CCTTTCCCCS-SGGGCEECTTTCCEECGGGEEC--------------CCEEHHHHHHHHTT
T ss_pred cccCcCCccc-cccccccCCCCCCeeCHHHhCCCCC----------CceECHHHHHHHhcc
Confidence 5999999999 8999999999999999999998653 499999999987654
No 10
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=95.89 E-value=0.0031 Score=55.56 Aligned_cols=50 Identities=22% Similarity=0.529 Sum_probs=42.2
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhh
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLR 59 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~ 59 (368)
.|..|..+|+++..+.+-|..|..-||..|... . .....=+|..|+..-.
T Consensus 70 ~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~---~------~~~~~W~C~vC~k~re 119 (153)
T 2zet_C 70 HCARCLQPYRLLLNSRRQCLECSLFVCKSCSHA---H------PEEQGWLCDPCHLARV 119 (153)
T ss_dssp BCTTTCCBGGGCSSCCEECTTTCCEECGGGEEC---C------SSSSSCEEHHHHHHHH
T ss_pred cchhhcCccccccCCCCcCCCCCchhhcccccc---c------CCCCcEeeHHHHHHHH
Confidence 499999999988899999999999999999843 1 2456789999998754
No 11
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=95.71 E-value=0.0052 Score=53.00 Aligned_cols=59 Identities=12% Similarity=0.208 Sum_probs=45.9
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhhccCCC
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKAFHTD 65 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~~~e~~ 65 (368)
.|..|..+|+++..+.|.|..|..-||..|...... ......=+|..|+..-.-...++
T Consensus 57 ~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~------~~~~~~W~C~vC~k~rel~~kSG 115 (134)
T 1zbd_B 57 RCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSN------NRPHPVWLCKICLEQREVWKRSG 115 (134)
T ss_dssp BCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCC------SSSSCCEEEHHHHHHHHHHHHTS
T ss_pred cccccCCCcccccCCCCCCCCCCcccccccCCccCC------CCCccceechhhHHHHHHHHhhh
Confidence 499999999967788999999999999999866211 13577789999999755444433
No 12
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=90.35 E-value=0.61 Score=33.53 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=33.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 040121 184 DDAKRTNDRVGQEVENHTRKAQLQEVELERTTKQLKE 220 (368)
Q Consensus 184 d~lkk~n~~L~qEV~~L~~k~~~q~~elq~~~kk~~E 220 (368)
-.||..|+.|-+-|..|.+.|..+|.||+++.+=+++
T Consensus 7 ~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 7 LRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999987764
No 13
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=90.24 E-value=0.6 Score=34.48 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=35.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 040121 183 VDDAKRTNDRVGQEVENHTRKAQLQEVELERTTKQLKEAI 222 (368)
Q Consensus 183 ~d~lkk~n~~L~qEV~~L~~k~~~q~~elq~~~kk~~Ea~ 222 (368)
..-||..|..|-.-|+.|+.+|-.+|.||.|+.+=+++--
T Consensus 13 ~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkqHg 52 (58)
T 3a2a_A 13 LLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQHG 52 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4678999999999999999999999999999999887643
No 14
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=89.48 E-value=0.067 Score=52.58 Aligned_cols=17 Identities=35% Similarity=1.020 Sum_probs=0.0
Q ss_pred CCCCcccccchHHHhhh
Q 040121 44 PNKPYRICDNCFSKLRK 60 (368)
Q Consensus 44 ~~kpvRVC~~C~~~L~~ 60 (368)
..+++|||+.||..|.+
T Consensus 416 ~~~~~rvC~~C~~~l~~ 432 (434)
T 3mpx_A 416 KDRMAKVCDGCFGELKK 432 (434)
T ss_dssp -----------------
T ss_pred CCCcCEecHHHHHHHHh
Confidence 46899999999999864
No 15
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=89.38 E-value=0.19 Score=38.26 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=21.6
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCC
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSS 30 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sC 30 (368)
.|..|++..+ |+ ...|| ||.+||..+
T Consensus 17 rC~~C~kkvg-l~--~f~Cr-Cg~~FC~~H 42 (64)
T 1wfh_A 17 RCTVCRKRVG-LT--GFMCR-CGTTFCGSH 42 (64)
T ss_dssp CCTTTCCCCC-TT--CEECS-SSCEECTTT
T ss_pred cChhhCCccC-cc--CEEee-cCCEecccc
Confidence 3899999888 65 48895 999999865
No 16
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=88.80 E-value=0.21 Score=39.06 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=21.4
Q ss_pred CCCCCCCCCcccccccccccCCceeeCCC
Q 040121 2 RSGCRLPFNNFKRKRHNCYNYGMVFCHSS 30 (368)
Q Consensus 2 C~~C~~~F~~f~rRRHHCR~CG~VfC~sC 30 (368)
|..|++..+ ++. ..|| ||.+||..+
T Consensus 28 C~~CrKkvg-L~g--f~Cr-Cg~~FCs~H 52 (74)
T 1wfl_A 28 CFMCRKKVG-LTG--FDCR-CGNLFCGLH 52 (74)
T ss_dssp CSSSCCBCG-GGC--EECT-TSCEECSSS
T ss_pred ChhhCCccc-ccC--eecC-CCCEechhc
Confidence 899999988 653 8899 999999865
No 17
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=88.00 E-value=0.11 Score=47.46 Aligned_cols=16 Identities=44% Similarity=1.130 Sum_probs=14.4
Q ss_pred CCCcccccchHHHhhh
Q 040121 45 NKPYRICDNCFSKLRK 60 (368)
Q Consensus 45 ~kpvRVC~~C~~~L~~ 60 (368)
.+++|||+.||..|+.
T Consensus 204 ~~~~RvC~~C~~~l~~ 219 (220)
T 1dvp_A 204 EKEVRVCDGCFAALQR 219 (220)
T ss_dssp EEEEEECHHHHHHHHH
T ss_pred CCCCEeCHHHHHHHhc
Confidence 6899999999999864
No 18
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=87.61 E-value=0.29 Score=39.22 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=21.5
Q ss_pred CCCCCCCCCcccccccccccCCceeeCCC
Q 040121 2 RSGCRLPFNNFKRKRHNCYNYGMVFCHSS 30 (368)
Q Consensus 2 C~~C~~~F~~f~rRRHHCR~CG~VfC~sC 30 (368)
|..|++..+ |+. ..+|| ||.+||..+
T Consensus 28 C~~C~kkvg-l~~-~f~Cr-Cg~~FC~~H 53 (85)
T 1wff_A 28 CFLCGKKTG-LAT-SFECR-CGNNFCASH 53 (85)
T ss_dssp CSSSCCBCS-SSS-CEECT-TCCEECTTT
T ss_pred chhhCCeec-ccC-CeEcC-CCCEecccC
Confidence 889999988 642 48997 999999865
No 19
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=87.55 E-value=4 Score=33.05 Aligned_cols=54 Identities=11% Similarity=0.165 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-HHHHHHHHHHHH
Q 040121 192 RVGQEVENHTRKAQLQEVELERTTKQLKEAIAIAGEETAKCKA-AKEVIKSLTAQL 246 (368)
Q Consensus 192 ~L~qEV~~L~~k~~~q~~elq~~~kk~~Ea~~lA~eEsaK~kA-AKEvIKSLTaQL 246 (368)
-+-+||.+|++|.++.+.+|.+++.++.+|....- |+.|... |--=+.+|+-.+
T Consensus 41 ~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLe-e~ek~~~~aE~ev~~L~Rri 95 (101)
T 3u1c_A 41 QLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLL-FAEENAAKAESEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 44556999999999999999999999999876654 4454443 555678887643
No 20
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=86.20 E-value=0.4 Score=36.48 Aligned_cols=26 Identities=23% Similarity=0.485 Sum_probs=21.5
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCC
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSS 30 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sC 30 (368)
.|..|++..+ |+ ...| .||.+||..+
T Consensus 17 rC~~C~kkvg-l~--~f~C-rCg~~FC~~H 42 (64)
T 1wg2_A 17 RCFSCNKKVG-VM--GFKC-KCGSTFCGSH 42 (64)
T ss_dssp SCTTTCCCCT-TS--CEEC-TTSCEECSSS
T ss_pred cChhhCCccc-cc--CeEe-ecCCEecccC
Confidence 3899999888 65 4889 6999999865
No 21
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=85.01 E-value=0.47 Score=37.08 Aligned_cols=25 Identities=20% Similarity=0.541 Sum_probs=21.2
Q ss_pred CCCCCCCCCcccccccccccCCceeeCCC
Q 040121 2 RSGCRLPFNNFKRKRHNCYNYGMVFCHSS 30 (368)
Q Consensus 2 C~~C~~~F~~f~rRRHHCR~CG~VfC~sC 30 (368)
|..|++..+ |+ ...| .||.+||..+
T Consensus 28 C~~C~kkvg-L~--~f~C-rCg~~FCs~H 52 (74)
T 1wfp_A 28 CLSCNKKVG-VT--GFKC-RCGSTFCGTH 52 (74)
T ss_dssp CSSSCCBCT-TT--CEEC-TTSCEECTTT
T ss_pred chhhcCccc-cc--ceEe-ccCCEecccc
Confidence 899999988 66 5899 5999999864
No 22
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.28 E-value=3.6 Score=33.61 Aligned_cols=48 Identities=25% Similarity=0.254 Sum_probs=35.2
Q ss_pred HHHhHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 040121 202 RKAQLQEVELERTTKQ-LKEAIAIAGEETAKCKAAKEVIKSLTAQLKDM 249 (368)
Q Consensus 202 ~k~~~q~~elq~~~kk-~~Ea~~lA~eEsaK~kAAKEvIKSLTaQLKdM 249 (368)
.+....+.||+.++.. .+||-.|++++--.+-+++.=...|.+||+|.
T Consensus 47 ~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 47 EEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREK 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344455666665554 47888899988777777888888899999875
No 23
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.83 E-value=0.76 Score=36.04 Aligned_cols=47 Identities=13% Similarity=0.377 Sum_probs=38.6
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHH
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSK 57 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~ 57 (368)
.|..|+.+|++|+.+---|+.|-+-+|..|--.. ..+.=.|..|+..
T Consensus 27 ~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~----------~~~~W~C~VC~k~ 73 (76)
T 2csz_A 27 TCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQE----------SNGTWRCKVCSGP 73 (76)
T ss_dssp BCSSSCCBCSSSCTTTSEETTTTEECCTTSEEEC----------STTCEEEHHHHSS
T ss_pred chhhhCccccccccCCCcCcccChhhcccccccC----------CCCCEEEeeCchh
Confidence 4899999999888999999999999999996441 1256788888864
No 24
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=79.71 E-value=9.1 Score=30.25 Aligned_cols=46 Identities=26% Similarity=0.254 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 040121 188 RTNDRVGQEVENHTRKAQLQEVELERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLK 247 (368)
Q Consensus 188 k~n~~L~qEV~~L~~k~~~q~~elq~~~kk~~Ea~~lA~eEsaK~kAAKEvIKSLTaQLK 247 (368)
+-.+-|.|||+.|+.+-...|-|-.-|.+|+ ||.|+-|-+|..||.
T Consensus 19 ~~~E~L~qEi~~Lr~kv~elEnErlQyEkKL--------------KsTK~El~~Lq~qLe 64 (81)
T 3qh9_A 19 RKAEELLQELRHLKIKVEELENERNQYEWKL--------------KATKAEVAQLQEQVA 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hhhHHHHHHHHHHHH
Confidence 3344688999999999999988888888877 455677777777653
No 25
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=78.49 E-value=16 Score=29.31 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 040121 192 RVGQEVENHTRKAQLQEVELERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQL 246 (368)
Q Consensus 192 ~L~qEV~~L~~k~~~q~~elq~~~kk~~Ea~~lA~eEsaK~kAAKEvIKSLTaQL 246 (368)
-+.+||..|++|.+..+.++.++..++++|..-.-++--+.-.|--=+.+|+-.|
T Consensus 41 ~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRri 95 (101)
T 3u59_A 41 QLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445588999999999999999998888887655443323333555677887643
No 26
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=75.99 E-value=0.47 Score=35.40 Aligned_cols=28 Identities=21% Similarity=0.346 Sum_probs=22.8
Q ss_pred CCCCCCCCCcccccccccccCCceeeCCCC
Q 040121 2 RSGCRLPFNNFKRKRHNCYNYGMVFCHSSS 31 (368)
Q Consensus 2 C~~C~~~F~~f~rRRHHCR~CG~VfC~sCS 31 (368)
|.+|+.+|. - ..+..|..|+.+||..|=
T Consensus 18 C~~C~~~~~-~-~~~y~C~~C~~~FC~dCD 45 (59)
T 1z60_A 18 CYGCQGELK-D-QHVYVCAVCQNVFCVDCD 45 (59)
T ss_dssp ETTTTEECT-T-SEEECCTTTTCCBCHHHH
T ss_pred ccccCcccC-C-CccEECCccCcCcccchh
Confidence 899999996 2 123789999999999984
No 27
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=73.96 E-value=4.1 Score=29.57 Aligned_cols=29 Identities=14% Similarity=0.106 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 040121 191 DRVGQEVENHTRKAQLQEVELERTTKQLK 219 (368)
Q Consensus 191 ~~L~qEV~~L~~k~~~q~~elq~~~kk~~ 219 (368)
|-|.+|+..|++|++.+..+++.+.+++.
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555556666666666666666666553
No 28
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=73.62 E-value=0.98 Score=35.73 Aligned_cols=45 Identities=16% Similarity=0.253 Sum_probs=31.5
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHh
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKL 58 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L 58 (368)
.|.+|...|. ....|-.||.+||..|...+.... ...|-.|...+
T Consensus 24 ~C~IC~~~~~----~p~~~~~CgH~FC~~Ci~~~~~~~---------~~~CP~Cr~~~ 68 (100)
T 3lrq_A 24 RCFICMEKLR----DARLCPHCSKLCCFSCIRRWLTEQ---------RAQCPHCRAPL 68 (100)
T ss_dssp BCTTTCSBCS----SEEECTTTCCEEEHHHHHHHHHHT---------CSBCTTTCCBC
T ss_pred CCccCCcccc----CccccCCCCChhhHHHHHHHHHHC---------cCCCCCCCCcC
Confidence 4889988665 345668999999999987765321 04677776554
No 29
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=72.97 E-value=2.3 Score=34.34 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=21.7
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCccc
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKT 35 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~ 35 (368)
.|.+|...|. .-..-..||.+||..|...+.
T Consensus 24 ~C~IC~~~~~----~pv~~~~CgH~fC~~Ci~~~~ 54 (117)
T 1jm7_B 24 RCSRCTNILR----EPVCLGGCEHIFCSNCVSDCI 54 (117)
T ss_dssp SCSSSCSCCS----SCBCCCSSSCCBCTTTGGGGT
T ss_pred CCCCCChHhh----CccEeCCCCCHHHHHHHHHHh
Confidence 4889987665 112223799999999987643
No 30
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.84 E-value=1.1 Score=34.39 Aligned_cols=27 Identities=22% Similarity=0.551 Sum_probs=21.1
Q ss_pred CCCCCCCCCccccc-ccccccCCceeeCCC
Q 040121 2 RSGCRLPFNNFKRK-RHNCYNYGMVFCHSS 30 (368)
Q Consensus 2 C~~C~~~F~~f~rR-RHHCR~CG~VfC~sC 30 (368)
|..|++..+ |+.. -..| .||.+||..+
T Consensus 18 C~~C~kk~g-L~~~egf~C-rCg~~FC~~H 45 (67)
T 1x4w_A 18 CFQCQTKLE-LVQQELGSC-RCGYVFCMLH 45 (67)
T ss_dssp CSSSCCBCC-HHHHHHHCC-SSSCCCCTTT
T ss_pred chhhCCeec-ccccCceEe-cCCCEehhcc
Confidence 889999888 6531 2689 7999999865
No 31
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=72.33 E-value=25 Score=30.28 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=13.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 040121 184 DDAKRTNDRVGQEVENHTRKAQLQEVELER 213 (368)
Q Consensus 184 d~lkk~n~~L~qEV~~L~~k~~~q~~elq~ 213 (368)
|.+|+.-..|..+++.|..+.+..+.+|..
T Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~ 31 (284)
T 1c1g_A 2 DAIKKKMQMLKLDKENALDRADEAEADKKA 31 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 445555555555544444443333333333
No 32
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=70.44 E-value=5.5 Score=25.41 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q 040121 197 VENHTRKAQLQEVELERTTKQLK 219 (368)
Q Consensus 197 V~~L~~k~~~q~~elq~~~kk~~ 219 (368)
-+.|..||..+|-+||-+.||++
T Consensus 3 wealekkcaalesklqalekkle 25 (31)
T 3ljm_A 3 WEALEKKCAALESKLQALEKKLE 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999986
No 33
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=69.75 E-value=3.2 Score=28.46 Aligned_cols=34 Identities=9% Similarity=-0.069 Sum_probs=23.0
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCccc
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKT 35 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~ 35 (368)
.|.+|...|. -...-.....||.+||..|...+.
T Consensus 7 ~C~IC~~~~~-~~~~~~~~~~C~H~f~~~Ci~~w~ 40 (55)
T 1iym_A 7 ECAVCLAELE-DGEEARFLPRCGHGFHAECVDMWL 40 (55)
T ss_dssp CCTTTCCCCC-TTSCCEECSSSCCEECTTHHHHTT
T ss_pred cCccCCcccc-CCCceEECCCCCCcccHHHHHHHH
Confidence 4889988886 322112223699999999987654
No 34
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=69.48 E-value=12 Score=37.28 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhC
Q 040121 192 RVGQEVENHTRKAQLQEVELERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERL 253 (368)
Q Consensus 192 ~L~qEV~~L~~k~~~q~~elq~~~kk~~Ea~~lA~eEsaK~kAAKEvIKSLTaQLKdMAeKL 253 (368)
.|.+|++.|+++++.++.+|+.++..+++.-....+|-. .-|-|-++|.||-.++
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEET-------VRRTLHNELQELRGNI 61 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHcCCCe
Confidence 566777888888877777787777777777655555543 3466788888886544
No 35
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=69.24 E-value=15 Score=29.90 Aligned_cols=52 Identities=15% Similarity=0.302 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 040121 191 DRVGQEVENHTRKAQLQEVELERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDM 249 (368)
Q Consensus 191 ~~L~qEV~~L~~k~~~q~~elq~~~kk~~Ea~~lA~eEsaK~kAAKEvIKSLTaQLKdM 249 (368)
+.|.+++..|..+....+.|+.++...+ .+|-+++..|-...+-|..+|-|+
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L~~~l-------~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRLREDI-------AKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555444 445555555444444444444433
No 36
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=68.82 E-value=8.6 Score=30.41 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=15.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 040121 184 DDAKRTNDRVGQEVENHTRKAQLQEVELERTT 215 (368)
Q Consensus 184 d~lkk~n~~L~qEV~~L~~k~~~q~~elq~~~ 215 (368)
+.||..|..|++|++.++...+.++.|+++++
T Consensus 30 eELKekN~~L~~e~~e~~~~~~~L~~en~qLk 61 (81)
T 2jee_A 30 EELKEKNNSLSQEVQNAQHQREELERENNHLK 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44555555555555554444444444444443
No 37
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=68.71 E-value=17 Score=36.68 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=10.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhCC
Q 040121 232 CKAAKEVIKSLTAQLKDMAERLP 254 (368)
Q Consensus 232 ~kAAKEvIKSLTaQLKdMAeKLp 254 (368)
.|+.++-++.|.++|.++..+||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~ip 107 (455)
T 2dq0_A 85 IGELENEVEELKKKIDYYLWRLP 107 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 33334444444445555555553
No 38
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=68.39 E-value=1.2 Score=38.23 Aligned_cols=45 Identities=18% Similarity=0.213 Sum_probs=30.3
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHh
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKL 58 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L 58 (368)
.|.+|...|. ....+..||.+||..|...+... ....|-.|...+
T Consensus 56 ~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~~~~---------~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 56 MCPICLDMLK----NTMTTKECLHRFCADCIITALRS---------GNKECPTCRKKL 100 (165)
T ss_dssp BCTTTSSBCS----SEEEETTTCCEEEHHHHHHHHHT---------TCCBCTTTCCBC
T ss_pred CCcccChHhh----CcCEeCCCCChhHHHHHHHHHHh---------CcCCCCCCCCcC
Confidence 4899987665 23344589999999998776531 124577776554
No 39
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=68.27 E-value=35 Score=29.81 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=31.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 040121 183 VDDAKRTNDRVGQEVENHTRKAQLQEVELERTTKQLKEAIA 223 (368)
Q Consensus 183 ~d~lkk~n~~L~qEV~~L~~k~~~q~~elq~~~kk~~Ea~~ 223 (368)
.+-|++.+..|...+..|.++...++.+-.++..+|+.|.-
T Consensus 9 ~e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k 49 (179)
T 2gd5_A 9 KELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAK 49 (179)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888777777777777777776654
No 40
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=68.01 E-value=2.8 Score=28.71 Aligned_cols=35 Identities=9% Similarity=0.010 Sum_probs=24.9
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccc
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTL 36 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~ 36 (368)
.|.+|...|. -..+......||.+||..|...+..
T Consensus 7 ~C~IC~~~~~-~~~~~~~~~~CgH~fc~~Ci~~~~~ 41 (55)
T 2ecm_A 7 GCPICLEDIH-TSRVVAHVLPCGHLLHRTCYEEMLK 41 (55)
T ss_dssp SCTTTCCCCC-TTTSCEEECTTSCEEETTHHHHHHH
T ss_pred cCcccChhhc-CCCcCeEecCCCCcccHHHHHHHHH
Confidence 4889988875 2223345567999999999877653
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=67.86 E-value=24 Score=35.57 Aligned_cols=14 Identities=7% Similarity=0.128 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhCC
Q 040121 241 SLTAQLKDMAERLP 254 (368)
Q Consensus 241 SLTaQLKdMAeKLp 254 (368)
-+++|||++-++++
T Consensus 569 ~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 569 LKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhc
Confidence 44457888888883
No 42
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=67.28 E-value=19 Score=30.18 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=32.3
Q ss_pred ccchhhhHHHHHHHHH-----------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 040121 181 ILVDDAKRTNDRVGQE-----------VENHTRKAQLQEVELERTTKQLKEAIAIAGEETAKCK 233 (368)
Q Consensus 181 ~~~d~lkk~n~~L~qE-----------V~~L~~k~~~q~~elq~~~kk~~Ea~~lA~eEsaK~k 233 (368)
..+|.|+...+.|..| |..|+-+.-.++.||....+..++ |.+|....+
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~----a~~e~e~Lr 74 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQ----AADDCEFLR 74 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 3578888888888888 555666666666777766666555 345555444
No 43
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.68 E-value=1 Score=32.49 Aligned_cols=25 Identities=20% Similarity=0.481 Sum_probs=20.1
Q ss_pred CCCCCCCCCCccc--ccccccccCCcee
Q 040121 1 MRSGCRLPFNNFK--RKRHNCYNYGMVF 26 (368)
Q Consensus 1 ~C~~C~~~F~~f~--rRRHHCR~CG~Vf 26 (368)
.|..|+..|. ++ .|+|.|+-||..+
T Consensus 14 ~CPrCn~~f~-~~~sLr~HmkycCp~~v 40 (49)
T 2e72_A 14 ICPRCNAQFR-VTEALRGHMCYCCPEMV 40 (49)
T ss_dssp CCTTTCCCCS-SHHHHHHHHHHHCTTTC
T ss_pred eCCccccccc-chHHHHhhhhhcCcchh
Confidence 4899999998 43 5689999998864
No 44
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=65.71 E-value=20 Score=27.63 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 040121 192 RVGQEVENHTRKAQLQEVELERTTKQLKEAIAIAG 226 (368)
Q Consensus 192 ~L~qEV~~L~~k~~~q~~elq~~~kk~~Ea~~lA~ 226 (368)
-+.+||..|++|.++.+.+|.++..++.+|..--.
T Consensus 38 ~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 38 QLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455899999999999999999888888876543
No 45
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=64.89 E-value=35 Score=34.96 Aligned_cols=23 Identities=0% Similarity=0.076 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Q 040121 193 VGQEVENHTRKAQLQEVELERTT 215 (368)
Q Consensus 193 L~qEV~~L~~k~~~q~~elq~~~ 215 (368)
|.+|+++|+.+......+|.+.+
T Consensus 82 ~~~~~~~l~~~rn~~sk~i~~~~ 104 (501)
T 1wle_A 82 LREQIRSLEEEKEAVTEAVRALV 104 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34446666666555555555543
No 46
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=64.78 E-value=30 Score=31.29 Aligned_cols=38 Identities=11% Similarity=0.237 Sum_probs=22.1
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 040121 181 ILVDDAKRTNDRVGQEVENHTRKAQLQEVELERTTKQL 218 (368)
Q Consensus 181 ~~~d~lkk~n~~L~qEV~~L~~k~~~q~~elq~~~kk~ 218 (368)
.++..|...|..|+|+++...++.+.+..+|+..+.+.
T Consensus 20 ~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 20 LLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44566666666776666555555555555555554444
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=63.75 E-value=2.6 Score=33.74 Aligned_cols=46 Identities=11% Similarity=0.144 Sum_probs=30.2
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhh
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRK 60 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~ 60 (368)
.|.+|...|.. -.--.||++||..|...+.. .....|-.|...+..
T Consensus 17 ~C~iC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~---------~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 17 QCGICMEILVE-----PVTLPCNHTLCKPCFQSTVE---------KASLCCPFCRRRVSS 62 (115)
T ss_dssp BCTTTCSBCSS-----CEECTTSCEECHHHHCCCCC---------TTTSBCTTTCCBCHH
T ss_pred CCccCCcccCc-----eeEcCCCCHHhHHHHHHHHh---------HCcCCCCCCCcccCc
Confidence 48899876651 11237999999999876542 112567777666543
No 48
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=63.72 E-value=4.7 Score=29.77 Aligned_cols=48 Identities=13% Similarity=0.136 Sum_probs=30.5
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhh
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRK 60 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~ 60 (368)
.|.+|...|. -.. ...--.||.+||..|...+... ...|-.|...+..
T Consensus 17 ~C~IC~~~~~-~~~-~~~~~~C~H~fc~~Ci~~~~~~----------~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 17 ECPVCKEDYA-LGE-SVRQLPCNHLFHDSCIVPWLEQ----------HDSCPVCRKSLTG 64 (78)
T ss_dssp CCTTTTSCCC-TTS-CEEECTTSCEEETTTTHHHHTT----------TCSCTTTCCCCCC
T ss_pred CCeeCCcccc-CCC-CEEEeCCCCeecHHHHHHHHHc----------CCcCcCcCCccCC
Confidence 4889988776 211 1112369999999999776421 1367777665543
No 49
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=61.94 E-value=20 Score=25.92 Aligned_cols=37 Identities=11% Similarity=0.224 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 040121 192 RVGQEVENHTRKAQLQEVELERTTKQLKEAIAIAGEETAKC 232 (368)
Q Consensus 192 ~L~qEV~~L~~k~~~q~~elq~~~kk~~Ea~~lA~eEsaK~ 232 (368)
-|+-+|..|..|-+++..++.-++-.++ -|.|||++-
T Consensus 8 ~Lss~V~~L~~kVdqLssdV~al~~~v~----~ak~eA~RA 44 (52)
T 1jcd_A 8 QASSDAQTANAKADQASNDANAARSDAQ----AAKDDAARA 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 4667788888888888888877666444 678888753
No 50
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=61.33 E-value=4.2 Score=30.07 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=22.4
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccc
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTL 36 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~ 36 (368)
.|.+|...|. ....-..||.+||..|...+..
T Consensus 17 ~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~~~ 48 (74)
T 2yur_A 17 LCLICKDIMT----DAVVIPCCGNSYCDECIRTALL 48 (74)
T ss_dssp SCSSSCCCCT----TCEECSSSCCEECTTHHHHHHH
T ss_pred CCcCCChHHh----CCeEcCCCCCHHHHHHHHHHHH
Confidence 4889987665 1223334999999999877553
No 51
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=61.26 E-value=32 Score=35.18 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhCC
Q 040121 233 KAAKEVIKSLTAQLKDMAERLP 254 (368)
Q Consensus 233 kAAKEvIKSLTaQLKdMAeKLp 254 (368)
++.++-++.|.++|.+++..||
T Consensus 88 ~~le~~~~~~~~~~~~~l~~iP 109 (485)
T 3qne_A 88 KEIIEKEAEADKNLRSKINQVG 109 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 3333444444445555655554
No 52
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.89 E-value=2.9 Score=31.41 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=30.0
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHH
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSK 57 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~ 57 (368)
.|.+|...|. -..+...--.||.+||..|...+.... .....|-.|...
T Consensus 17 ~C~IC~~~~~-~~~~~~~~~~CgH~fC~~Ci~~~~~~~-------~~~~~CP~Cr~~ 65 (88)
T 2ct2_A 17 ECPICMESFT-EEQLRPKLLHCGHTICRQCLEKLLASS-------INGVRCPFCSKI 65 (88)
T ss_dssp BCTTTCCBCC-TTSSCEEECSSSCEEEHHHHHHHHHHC-------SSCBCCTTTCCC
T ss_pred CCccCCcccc-ccCCCeEECCCCChhhHHHHHHHHHcC-------CCCcCCCCCCCc
Confidence 4889988887 322112234799999999987755321 123456666544
No 53
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=60.51 E-value=27 Score=29.00 Aligned_cols=48 Identities=23% Similarity=0.264 Sum_probs=25.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 040121 196 EVENHTRKAQLQEVELERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLK 247 (368)
Q Consensus 196 EV~~L~~k~~~q~~elq~~~kk~~Ea~~lA~eEsaK~kAAKEvIKSLTaQLK 247 (368)
||+.|+.+...-|.-|..-+..+++ ..+|-++.+++.|-|-.|.+|..
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~ide----lk~ei~q~~~~lE~I~vLkaQv~ 72 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDK----LKEEAEQHKIVMETVPVLKAQAD 72 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555455444444444443 34455556666666666666643
No 54
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=59.25 E-value=22 Score=35.41 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=13.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhCC
Q 040121 229 TAKCKAAKEVIKSLTAQLKDMAERLP 254 (368)
Q Consensus 229 saK~kAAKEvIKSLTaQLKdMAeKLp 254 (368)
..+-|+.++-++.|.++|.+++.+||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~ip 102 (421)
T 1ses_A 77 GEEAKRLEEALREKEARLEALLLQVP 102 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33444444555555556666666664
No 55
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=59.13 E-value=2.3 Score=35.49 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=21.8
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCccc
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKT 35 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~ 35 (368)
.|.+|...|.- ..--.||+.||..|...+.
T Consensus 55 ~C~iC~~~~~~-----~~~~~CgH~fc~~Ci~~~~ 84 (138)
T 4ayc_A 55 QCIICSEYFIE-----AVTLNCAHSFCSYCINEWM 84 (138)
T ss_dssp BCTTTCSBCSS-----EEEETTSCEEEHHHHHHHT
T ss_pred CCcccCcccCC-----ceECCCCCCccHHHHHHHH
Confidence 38999887751 2234799999999986643
No 56
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=59.03 E-value=2.9 Score=30.78 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=29.8
Q ss_pred CCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHh
Q 040121 2 RSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKL 58 (368)
Q Consensus 2 C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L 58 (368)
|.+|...|..- .. -.||.+||..|...+...... .......|-.|...+
T Consensus 15 C~IC~~~~~~p----~~-l~CgH~fC~~Ci~~~~~~~~~---~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 15 CPICLELLTEP----LS-LDCGHSLCRACITVSNKEAVT---SMGGKSSCPVCGISY 63 (79)
T ss_dssp ETTTTEECSSC----CC-CSSSCCCCHHHHSCCCCCCSS---SCCCCCCCSSSCCCC
T ss_pred CcCCCcccCCe----eE-CCCCCHHHHHHHHHHHHhccc---CCCCCCcCCCCCCcC
Confidence 78888777621 11 379999999998876542211 112345677775544
No 57
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=57.91 E-value=37 Score=34.69 Aligned_cols=24 Identities=8% Similarity=0.003 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Q 040121 193 VGQEVENHTRKAQLQEVELERTTK 216 (368)
Q Consensus 193 L~qEV~~L~~k~~~q~~elq~~~k 216 (368)
|.+|+++|+.+......+|.+.++
T Consensus 49 ~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 49 TQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334456666655555555555444
No 58
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.64 E-value=3.7 Score=30.08 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=22.5
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCccc
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKT 35 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~ 35 (368)
.|.+|...|. ....-..||.+||..|...+.
T Consensus 17 ~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~~ 47 (72)
T 2djb_A 17 LCSICKGYLI----DATTITECLHTFCKSCIVRHF 47 (72)
T ss_dssp SCTTTSSCCS----SCEECSSSCCEECHHHHHHHH
T ss_pred CCCCCChHHH----CcCEECCCCCHHHHHHHHHHH
Confidence 4888987665 123335899999999987755
No 59
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=57.42 E-value=2.6 Score=31.19 Aligned_cols=49 Identities=10% Similarity=0.120 Sum_probs=29.5
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHh
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKL 58 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L 58 (368)
.|.+|...|.. .. --.||.+||..|...+..... .......|-.|...+
T Consensus 21 ~C~IC~~~~~~----p~-~~~CgH~fC~~Ci~~~~~~~~----~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 21 TCPICLELLKE----PV-SADCNHSFCRACITLNYESNR----NTDGKGNCPVCRVPY 69 (85)
T ss_dssp SCTTTCSCCSS----CE-ECTTSCCBCHHHHHHHHHHSB----CTTSCBCCTTTCCCC
T ss_pred CCcCCChhhCc----ce-eCCCCCHHHHHHHHHHHHhcc----CCCCCCCCCCCCCcC
Confidence 48888877651 11 236999999999876543221 112345677665443
No 60
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.39 E-value=5.2 Score=29.51 Aligned_cols=50 Identities=16% Similarity=0.273 Sum_probs=29.5
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhh
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLR 59 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~ 59 (368)
.|.+|...|... . --.||.+||..|...+...... ......|-.|...+.
T Consensus 21 ~C~IC~~~~~~p----~-~~~CgH~fC~~Ci~~~~~~~~~----~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 21 TCPICLELLTQP----L-SLDCGHSFCQACLTANHKKSML----DKGESSCPVCRISYQ 70 (85)
T ss_dssp CCTTTCSCCSSC----B-CCSSSCCBCTTHHHHHHHHHHH----TTSCCCCTTTCCSSC
T ss_pred CCCCCCcccCCc----e-eCCCCCHHHHHHHHHHHHHhhc----CCCCCcCCCCCCccC
Confidence 488888877521 1 1379999999998765432111 112346666655543
No 61
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=56.94 E-value=3.3 Score=32.23 Aligned_cols=44 Identities=16% Similarity=0.124 Sum_probs=28.8
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHh
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKL 58 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L 58 (368)
.|.+|...|.. ......||+.||..|...+... ...|-.|...+
T Consensus 24 ~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~----------~~~CP~Cr~~~ 67 (99)
T 2y43_A 24 RCGICFEYFNI----AMIIPQCSHNYCSLCIRKFLSY----------KTQCPTCCVTV 67 (99)
T ss_dssp BCTTTCSBCSS----EEECTTTCCEEEHHHHHHHHTT----------CCBCTTTCCBC
T ss_pred CcccCChhhCC----cCEECCCCCHhhHHHHHHHHHC----------CCCCCCCCCcC
Confidence 48899887651 2233479999999998765431 13566665544
No 62
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=56.75 E-value=4.1 Score=32.05 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=28.6
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHH
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSK 57 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~ 57 (368)
.|.+|...|.. ..--.||++||..|...+.... .....|-.|...
T Consensus 23 ~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~-------~~~~~CP~Cr~~ 67 (112)
T 1jm7_A 23 ECPICLELIKE-----PVSTKCDHIFCKFCMLKLLNQK-------KGPSQCPLCKND 67 (112)
T ss_dssp SCSSSCCCCSS-----CCBCTTSCCCCSHHHHHHHHSS-------SSSCCCTTTSCC
T ss_pred CCcccChhhcC-----eEECCCCCHHHHHHHHHHHHhC-------CCCCCCcCCCCc
Confidence 48999886651 1224799999999987755321 112467777543
No 63
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=56.58 E-value=7.2 Score=27.38 Aligned_cols=28 Identities=7% Similarity=0.072 Sum_probs=20.7
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCc
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSK 33 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~ 33 (368)
.|.+|...|.. ..--.||..||..|...
T Consensus 8 ~C~IC~~~~~~-----p~~l~CgH~fC~~Ci~~ 35 (56)
T 1bor_A 8 RCQQCQAEAKC-----PKLLPCLHTLCSGCLEA 35 (56)
T ss_dssp SCSSSCSSCBC-----CSCSTTSCCSBTTTCSS
T ss_pred CceEeCCccCC-----eEEcCCCCcccHHHHcc
Confidence 48889887762 22357999999999755
No 64
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=56.36 E-value=7.9 Score=29.05 Aligned_cols=49 Identities=24% Similarity=0.455 Sum_probs=36.0
Q ss_pred CCCCCCC-CCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHH
Q 040121 1 MRSGCRL-PFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSK 57 (368)
Q Consensus 1 ~C~~C~~-~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~ 57 (368)
.|.+|.+ +|- = -==|.|..|-.-||..|..+..+ ..++.+-||..|..+
T Consensus 11 ~C~iC~KTKFA-D-G~Gh~C~yCk~r~CaRCGg~v~l------r~~k~~WvC~lC~k~ 60 (62)
T 2a20_A 11 TCGICHKTKFA-D-GCGHNCSYCQTKFCARCGGRVSL------RSNKVMWVCNLCRKQ 60 (62)
T ss_dssp CCSSSSCSCCC-S-SCCEEBTTTCCEECTTSEEEEES------STTCEEEEEHHHHHH
T ss_pred hhhhhccceec-c-CCCccccccCCeeecccCCEeee------cCCeEEEEehhhhhc
Confidence 4888876 453 1 12499999999999999877443 136888899999764
No 65
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.93 E-value=3.8 Score=29.63 Aligned_cols=45 Identities=18% Similarity=0.159 Sum_probs=32.2
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhhc
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKA 61 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~~ 61 (368)
.|.+|...|.. .--.||.+||..|...+.. ....|-.|...+...
T Consensus 17 ~C~IC~~~~~~------~~~~CgH~fc~~Ci~~~~~----------~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 17 ECCICMDGRAD------LILPCAHSFCQKCIDKWSD----------RHRNCPICRLQMTGA 61 (70)
T ss_dssp CCSSSCCSCCS------EEETTTEEECHHHHHHSSC----------CCSSCHHHHHCTTCC
T ss_pred CCeeCCcCccC------cccCCCCcccHHHHHHHHH----------CcCcCCCcCCcccCC
Confidence 48899887762 3357999999999866432 245788888776644
No 66
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=55.61 E-value=3.5 Score=32.68 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=28.9
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHh
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKL 58 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L 58 (368)
.|.+|...|. .....-.||.+||..|...+... ...|-.|...+
T Consensus 17 ~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~~~~----------~~~CP~Cr~~~ 60 (108)
T 2ckl_A 17 MCVLCGGYFI----DATTIIECLHSFCKTCIVRYLET----------SKYCPICDVQV 60 (108)
T ss_dssp BCTTTSSBCS----SEEEETTTCCEEEHHHHHHHHTS----------CSBCTTTCCBS
T ss_pred CCccCChHHh----CcCEeCCCCChhhHHHHHHHHHh----------CCcCcCCCccc
Confidence 4889987665 22333489999999998765421 14676665544
No 67
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=55.56 E-value=71 Score=29.25 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCc
Q 040121 237 EVIKSLTAQLKDMAERLPVGT 257 (368)
Q Consensus 237 EvIKSLTaQLKdMAeKLp~g~ 257 (368)
.-+..|.++..+++..+|+..
T Consensus 157 ~e~~~l~~~r~~l~~~i~~~l 177 (256)
T 3na7_A 157 ETQQIIFKKKEDLVEKTEPKI 177 (256)
T ss_dssp HHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHH
Confidence 345666678888999998864
No 68
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=54.92 E-value=5 Score=30.71 Aligned_cols=9 Identities=11% Similarity=0.357 Sum_probs=5.9
Q ss_pred CCCCCCCCC
Q 040121 2 RSGCRLPFN 10 (368)
Q Consensus 2 C~~C~~~F~ 10 (368)
|..|+..|.
T Consensus 31 C~~CG~~~e 39 (70)
T 1twf_L 31 CAECSSKLS 39 (70)
T ss_dssp CSSSCCEEC
T ss_pred CCCCCCcce
Confidence 666666666
No 69
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=53.74 E-value=3.6 Score=30.40 Aligned_cols=30 Identities=13% Similarity=-0.082 Sum_probs=21.8
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCccc
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKT 35 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~ 35 (368)
.|.+|...|.. -.--.||.+||..|...+.
T Consensus 10 ~C~IC~~~~~~-----Pv~~~CgH~fc~~Ci~~~~ 39 (78)
T 1t1h_A 10 RCPISLELMKD-----PVIVSTGQTYERSSIQKWL 39 (78)
T ss_dssp SCTTTSCCCSS-----EEEETTTEEEEHHHHHHHH
T ss_pred CCCCccccccC-----CEEcCCCCeecHHHHHHHH
Confidence 48889886651 2224799999999987654
No 70
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=53.71 E-value=38 Score=32.92 Aligned_cols=32 Identities=9% Similarity=0.199 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 040121 188 RTNDRVGQEVENHTRKAQLQEVELERTTKQLK 219 (368)
Q Consensus 188 k~n~~L~qEV~~L~~k~~~q~~elq~~~kk~~ 219 (368)
+++.-|.+|+..|+.....++.+|+.++.+++
T Consensus 5 ~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~ 36 (323)
T 1lwu_C 5 KTVQKILEEVRILEQIGVSHDAQIQELSEMWR 36 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 33444444554455554555555555554444
No 71
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=53.40 E-value=96 Score=26.91 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=38.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH----------------HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhCCCCc
Q 040121 197 VENHTRKAQLQEVELERTTKQLKE----------------AIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGT 257 (368)
Q Consensus 197 V~~L~~k~~~q~~elq~~~kk~~E----------------a~~lA~eEsaK~kAAKEvIKSLTaQLKdMAeKLp~g~ 257 (368)
+..|..+|++++.+.++.-+.++. .-.-...|-++. .|.++-|+.||..+ ++||-|.
T Consensus 38 i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r---~e~k~~l~~ql~qv-~~L~lGs 110 (150)
T 4dci_A 38 IANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSEL---EEQKRNLLQQQAQV-RELEMDQ 110 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHSCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-hcCCCcC
Confidence 778888888888877776444432 112222333333 67888899999997 8998884
No 72
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=52.91 E-value=4.2 Score=31.12 Aligned_cols=31 Identities=16% Similarity=0.326 Sum_probs=20.9
Q ss_pred CCCCCCCCCCccccc-ccccccCCceeeCCCCCc
Q 040121 1 MRSGCRLPFNNFKRK-RHNCYNYGMVFCHSSSSK 33 (368)
Q Consensus 1 ~C~~C~~~F~~f~rR-RHHCR~CG~VfC~sCSs~ 33 (368)
.|.+|-.+|. .... -.-| .||..||..|...
T Consensus 13 ~CpICle~~~-~~d~~~~p~-~CGH~fC~~Cl~~ 44 (78)
T 1e4u_A 13 ECPLCMEPLE-IDDINFFPC-TCGYQICRFCWHR 44 (78)
T ss_dssp BCTTTCCBCC-TTTTTCCSS-TTSCCCCHHHHHH
T ss_pred cCCccCccCc-ccccccccc-CCCCCcCHHHHHH
Confidence 4889988886 3211 1223 5999999999765
No 73
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=52.32 E-value=4.1 Score=33.09 Aligned_cols=44 Identities=11% Similarity=0.070 Sum_probs=28.5
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHh
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKL 58 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L 58 (368)
.|.+|...|.. -.--.||+.||..|...+.. .....|-.|...+
T Consensus 54 ~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~---------~~~~~CP~Cr~~~ 97 (124)
T 3fl2_A 54 QCICCQELVFR-----PITTVCQHNVCKDCLDRSFR---------AQVFSCPACRYDL 97 (124)
T ss_dssp BCTTTSSBCSS-----EEECTTSCEEEHHHHHHHHH---------TTCCBCTTTCCBC
T ss_pred CCCcCChHHcC-----cEEeeCCCcccHHHHHHHHh---------HCcCCCCCCCccC
Confidence 48899887761 11238999999999876543 1123566665544
No 74
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.15 E-value=7.1 Score=29.35 Aligned_cols=24 Identities=21% Similarity=0.481 Sum_probs=17.9
Q ss_pred CCC--CCCCCCcccccccccccCCceeeCC
Q 040121 2 RSG--CRLPFNNFKRKRHNCYNYGMVFCHS 29 (368)
Q Consensus 2 C~~--C~~~F~~f~rRRHHCR~CG~VfC~s 29 (368)
|.. |++. . |+ ..+|+.||..||..
T Consensus 15 Cs~~~Ck~~-~-ll--~f~C~~C~~~FC~~ 40 (63)
T 1x4v_A 15 CERAGCRQR-E-MM--KLTCERCSRNFCIK 40 (63)
T ss_dssp CCSTTCCCC-C-SS--CCBCSSSCCBCCHH
T ss_pred CCccCCCCC-C-cc--ceECCCCCcccCcc
Confidence 555 8875 4 43 37999999999964
No 75
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=51.96 E-value=11 Score=27.28 Aligned_cols=33 Identities=6% Similarity=0.035 Sum_probs=27.7
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 040121 181 ILVDDAKRTNDRVGQEVENHTRKAQLQEVELER 213 (368)
Q Consensus 181 ~~~d~lkk~n~~L~qEV~~L~~k~~~q~~elq~ 213 (368)
..+|.|+..|+-|.++|+.|+++.+.+..+|.+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457889999999999999999988888777654
No 76
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=51.92 E-value=5.5 Score=31.49 Aligned_cols=32 Identities=9% Similarity=0.235 Sum_probs=23.7
Q ss_pred CCCCCCCCCCcccccccccccCCce-----eeCCCCCc
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMV-----FCHSSSSK 33 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~V-----fC~sCSs~ 33 (368)
.|..|+.+.. ...+.+||..|+.- ||..|-..
T Consensus 4 ~CP~C~~~l~-~~~~~~~C~~C~~~~~~~afCPeCgq~ 40 (81)
T 2jrp_A 4 TCPVCHHALE-RNGDTAHCETCAKDFSLQALCPDCRQP 40 (81)
T ss_dssp CCSSSCSCCE-ECSSEEECTTTCCEEEEEEECSSSCSC
T ss_pred CCCCCCCccc-cCCCceECccccccCCCcccCcchhhH
Confidence 4889999887 66677888888875 56666544
No 77
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.66 E-value=4.4 Score=28.73 Aligned_cols=31 Identities=13% Similarity=0.175 Sum_probs=21.6
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccc
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTL 36 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~ 36 (368)
.|.+|...|.. -.. -.||.+||..|...+..
T Consensus 22 ~C~IC~~~~~~----p~~-~~CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 22 ICPICLDILQK----PVT-IDCGHNFCLKCITQIGE 52 (63)
T ss_dssp BCTTTCSBCSS----CEE-CTTSSEECHHHHHHHHH
T ss_pred CCCcCCchhCC----eEE-eCCCCcchHHHHHHHHH
Confidence 38888876661 111 27999999999877553
No 78
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=51.09 E-value=6.7 Score=28.01 Aligned_cols=45 Identities=13% Similarity=0.111 Sum_probs=29.4
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhh
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLR 59 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~ 59 (368)
.|.+|...|.. ....-.||.+||..|...+... ...|-.|...+.
T Consensus 7 ~C~IC~~~~~~----~~~~~~C~H~fc~~Ci~~~~~~----------~~~CP~Cr~~~~ 51 (68)
T 1chc_A 7 RCPICLEDPSN----YSMALPCLHAFCYVCITRWIRQ----------NPTCPLCKVPVE 51 (68)
T ss_dssp CCSSCCSCCCS----CEEETTTTEEESTTHHHHHHHH----------SCSTTTTCCCCC
T ss_pred CCeeCCccccC----CcEecCCCCeeHHHHHHHHHhC----------cCcCcCCChhhH
Confidence 48899887751 1234579999999998765421 135767755443
No 79
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=50.71 E-value=35 Score=29.82 Aligned_cols=70 Identities=16% Similarity=0.151 Sum_probs=51.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhC
Q 040121 184 DDAKRTNDRVGQEVENHTRKAQLQEVELERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERL 253 (368)
Q Consensus 184 d~lkk~n~~L~qEV~~L~~k~~~q~~elq~~~kk~~Ea~~lA~eEsaK~kAAKEvIKSLTaQLKdMAeKL 253 (368)
+.|+..-+++++-+++-.+.-+++..|.|-.-...++|+.+...---|-++|++.|+.|+..|...=-||
T Consensus 23 ~qL~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL 92 (158)
T 3tul_A 23 SQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKL 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555556666666788888888889998888778899999999999999888877777
No 80
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=50.48 E-value=62 Score=26.18 Aligned_cols=47 Identities=23% Similarity=0.257 Sum_probs=31.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 040121 197 VENHTRKAQLQEVELERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLK 247 (368)
Q Consensus 197 V~~L~~k~~~q~~elq~~~kk~~Ea~~lA~eEsaK~kAAKEvIKSLTaQLK 247 (368)
|+.|+.+...-+.-|..-+..+++ -.||.+++++..|-|-.|.+|.+
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~----lke~~~q~~~~~E~i~vLk~Qv~ 50 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDK----LKEEAEQHKIVMETVPVLKAQAD 50 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666655555555554444444 45688888888888888888765
No 81
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=50.26 E-value=5 Score=28.89 Aligned_cols=34 Identities=6% Similarity=-0.060 Sum_probs=23.6
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccc
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTL 36 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~ 36 (368)
.|.+|...|. - ......-.||.+||..|...+..
T Consensus 16 ~C~IC~~~~~-~-~~~~~~~~C~H~fc~~Ci~~~~~ 49 (69)
T 2kiz_A 16 KCTICLSILE-E-GEDVRRLPCMHLFHQVCVDQWLI 49 (69)
T ss_dssp SBTTTTBCCC-S-SSCEEECTTSCEEEHHHHHHHHH
T ss_pred CCeeCCcccc-C-CCcEEEeCCCCHHHHHHHHHHHH
Confidence 4888988775 1 12234457999999999877653
No 82
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.18 E-value=4.7 Score=29.24 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=21.2
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCccc
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKT 35 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~ 35 (368)
.|.+|...|.. ..--.||.+||..|...+.
T Consensus 22 ~C~IC~~~~~~-----~~~~~CgH~fC~~Ci~~~~ 51 (73)
T 2ysl_A 22 ICPICLDILQK-----PVTIDCGHNFCLKCITQIG 51 (73)
T ss_dssp BCTTTCSBCSS-----EEECTTCCEEEHHHHHHHC
T ss_pred EeccCCcccCC-----eEEcCCCChhhHHHHHHHH
Confidence 38888887662 1112899999999987654
No 83
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.74 E-value=4.5 Score=29.51 Aligned_cols=44 Identities=14% Similarity=0.168 Sum_probs=28.1
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhh
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLR 59 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~ 59 (368)
.|.+|...|.. - .--.||.+||..|...+... ...|-.|...+.
T Consensus 17 ~C~IC~~~~~~-~----~~~~CgH~fC~~Ci~~~~~~----------~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 17 ECAICLQTCVH-P----VSLPCKHVFCYLCVKGASWL----------GKRCALCRQEIP 60 (71)
T ss_dssp BCSSSSSBCSS-E----EEETTTEEEEHHHHHHCTTC----------SSBCSSSCCBCC
T ss_pred CCccCCcccCC-C----EEccCCCHHHHHHHHHHHHC----------CCcCcCcCchhC
Confidence 38889876651 1 12369999999998664421 146766655543
No 84
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.67 E-value=5.1 Score=29.91 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=21.9
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCccc
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKT 35 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~ 35 (368)
.|.+|...|.. ..--.||.+||..|...+.
T Consensus 17 ~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~ 46 (81)
T 2csy_A 17 RCFICRQAFQN-----PVVTKCRHYFCESCALEHF 46 (81)
T ss_dssp BCSSSCSBCCS-----EEECTTSCEEEHHHHHHHH
T ss_pred CCcCCCchhcC-----eeEccCCCHhHHHHHHHHH
Confidence 38889887752 1225899999999987754
No 85
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=48.74 E-value=28 Score=29.29 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=21.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 040121 204 AQLQEVELERTTKQLKEAIAIAGEETAKCKAAKEVIKS 241 (368)
Q Consensus 204 ~~~q~~elq~~~kk~~Ea~~lA~eEsaK~kAAKEvIKS 241 (368)
.+-++-||..+.++|++| .+|..+.++..++.+.
T Consensus 73 vqeLqgEI~~Lnq~Lq~a----~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDA----SAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHhhchhhhh
Confidence 444556888888888885 4566666666655443
No 86
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.45 E-value=3.6 Score=30.33 Aligned_cols=33 Identities=12% Similarity=0.036 Sum_probs=23.2
Q ss_pred CCCCCCCCCcccccccccccCCceeeCCCCCcccc
Q 040121 2 RSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTL 36 (368)
Q Consensus 2 C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~ 36 (368)
|.+|...|. -. .....-.||.+||..|...+..
T Consensus 26 C~IC~~~~~-~~-~~~~~l~C~H~fh~~Ci~~w~~ 58 (75)
T 1x4j_A 26 CVVCMCDFE-SR-QLLRVLPCNHEFHAKCVDKWLK 58 (75)
T ss_dssp ETTTTEECC-BT-CEEEEETTTEEEETTHHHHHHH
T ss_pred CeECCcccC-CC-CeEEEECCCCHhHHHHHHHHHH
Confidence 788888776 21 1234456999999999877653
No 87
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.35 E-value=5.3 Score=27.49 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=21.0
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCccc
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKT 35 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~ 35 (368)
.|.+|...|.. ..--.||.+||..|...+.
T Consensus 17 ~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~ 46 (58)
T 2ecj_A 17 SCSVCLEYLKE-----PVIIECGHNFCKACITRWW 46 (58)
T ss_dssp BCSSSCCBCSS-----CCCCSSCCCCCHHHHHHHT
T ss_pred CCccCCcccCc-----cEeCCCCCccCHHHHHHHH
Confidence 38888877662 1124799999999987653
No 88
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=47.23 E-value=7.5 Score=35.03 Aligned_cols=30 Identities=3% Similarity=-0.106 Sum_probs=21.3
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCccc
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKT 35 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~ 35 (368)
.|.+|...|. .-..-.||.+||..|...+.
T Consensus 210 ~c~i~~~~~~-----dPv~~~~gh~f~~~~i~~~~ 239 (281)
T 2c2l_A 210 CGKISFELMR-----EPCITPSGITYDRKDIEEHL 239 (281)
T ss_dssp BCTTTCSBCS-----SEEECSSCCEEETTHHHHHH
T ss_pred CCcCcCCHhc-----CCeECCCCCEECHHHHHHHH
Confidence 3777777554 34456799999999976654
No 89
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=46.54 E-value=7.6 Score=27.93 Aligned_cols=27 Identities=15% Similarity=0.333 Sum_probs=15.5
Q ss_pred CCCCCCCCCcc-----------cccccccccCCceeeC
Q 040121 2 RSGCRLPFNNF-----------KRKRHNCYNYGMVFCH 28 (368)
Q Consensus 2 C~~C~~~F~~f-----------~rRRHHCR~CG~VfC~ 28 (368)
|..|++.|... ..|.+.|..||+.|-.
T Consensus 7 C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRD 44 (60)
T ss_dssp CTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESS
T ss_pred CCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCC
Confidence 77777777621 1234566666666543
No 90
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=46.32 E-value=15 Score=36.71 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHH-------HHHHHHHhCC
Q 040121 233 KAAKEVIKSLTA-------QLKDMAERLP 254 (368)
Q Consensus 233 kAAKEvIKSLTa-------QLKdMAeKLp 254 (368)
+..|+-||.|.+ +|.+++.+||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 106 (425)
T 2dq3_A 78 KELKEEIDRLEEELRKVEEELKNTLLWIP 106 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334455555555 5555555554
No 91
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=45.72 E-value=38 Score=26.93 Aligned_cols=41 Identities=17% Similarity=0.247 Sum_probs=32.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 040121 182 LVDDAKRTNDRVGQEVENHTRKAQLQEVELERTTKQLKEAI 222 (368)
Q Consensus 182 ~~d~lkk~n~~L~qEV~~L~~k~~~q~~elq~~~kk~~Ea~ 222 (368)
+...|.+.-+.|..+++.|..+.+..+.++..+++++.+..
T Consensus 71 a~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 71 AVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777788888888888888888888888765
No 92
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=45.48 E-value=44 Score=26.55 Aligned_cols=56 Identities=21% Similarity=0.347 Sum_probs=29.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH--HHHHHHHhCCCC
Q 040121 199 NHTRKAQLQEVELERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTA--QLKDMAERLPVG 256 (368)
Q Consensus 199 ~L~~k~~~q~~elq~~~kk~~Ea~~lA~eEsaK~kAAKEvIKSLTa--QLKdMAeKLp~g 256 (368)
+|+.+...++.++..+.+++.++.+--.+.-+ -+..++-|+-|.. .|||++..| -|
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~-~~~~~~hI~~Lh~YNeiKD~gq~L-~g 62 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAKLKNRDA-KQTVQKHIDLLHTYNEIRDIALGM-IG 62 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCH-HHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHHhHHHHHHHHH-HH
Confidence 34444444444444444444444321111100 1345677888875 999998887 55
No 93
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=45.35 E-value=75 Score=35.50 Aligned_cols=18 Identities=22% Similarity=0.135 Sum_probs=7.3
Q ss_pred HHHHHHHHhHHHHHHHHH
Q 040121 197 VENHTRKAQLQEVELERT 214 (368)
Q Consensus 197 V~~L~~k~~~q~~elq~~ 214 (368)
|.+|+++.+.++.+++++
T Consensus 986 v~~L~~e~~~l~~~~~~~ 1003 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQT 1003 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 94
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=44.73 E-value=34 Score=34.43 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 040121 193 VGQEVENHTRKAQLQEVELERTTKQLKEAIAIA 225 (368)
Q Consensus 193 L~qEV~~L~~k~~~q~~elq~~~kk~~Ea~~lA 225 (368)
+..||+.|+++-++++..++...+++++-...+
T Consensus 461 ~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~ 493 (597)
T 3oja_B 461 LRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRY 493 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 344477777777777777776666666544433
No 95
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=44.70 E-value=12 Score=28.97 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=18.6
Q ss_pred CCC--CCCCCCcccccccccccCCceeeCCC
Q 040121 2 RSG--CRLPFNNFKRKRHNCYNYGMVFCHSS 30 (368)
Q Consensus 2 C~~--C~~~F~~f~rRRHHCR~CG~VfC~sC 30 (368)
|.. |++. . |+ -..|+.||.+||...
T Consensus 17 Cs~~~C~~~-d-fl--pf~C~~C~~~FC~~H 43 (75)
T 1wys_A 17 CQVQHCRQR-D-FL--PFVCDGCSGIFCLEH 43 (75)
T ss_dssp CSCTTTCCC-S-CC--CEECTTTCCEECSTT
T ss_pred cCcccCCCc-c-ce--eeECcccCcCcCccc
Confidence 555 8775 4 43 478999999999854
No 96
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=44.04 E-value=50 Score=32.87 Aligned_cols=56 Identities=13% Similarity=0.099 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhC
Q 040121 191 DRVGQEVENHTRKAQLQEVELERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERL 253 (368)
Q Consensus 191 ~~L~qEV~~L~~k~~~q~~elq~~~kk~~Ea~~lA~eEsaK~kAAKEvIKSLTaQLKdMAeKL 253 (368)
+-|.+|++.|+++.+..+.++++.+..+++.-..-.+ +-..-|-|-++|.||..++
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~-------~~~~rr~l~n~~~~l~gnI 61 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ-------SNMERKELHNTVMDLRDNI 61 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhCCCE
Confidence 4455555555555555555555444444433221111 1234467888888886654
No 97
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=43.86 E-value=1.1e+02 Score=23.81 Aligned_cols=60 Identities=17% Similarity=0.208 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 040121 188 RTNDRVGQEVENHTRKAQLQEVELERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMA 250 (368)
Q Consensus 188 k~n~~L~qEV~~L~~k~~~q~~elq~~~kk~~Ea~~lA~eEsaK~kAAKEvIKSLTaQLKdMA 250 (368)
..++.+.+-++.|..+-..++..|+.+++.++++- .+.-......|-++..|.--|-||.
T Consensus 6 ~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~---~~q~~~~~Elk~l~e~Ld~KI~eL~ 65 (79)
T 3cvf_A 6 AEREETQQKVQDLETRNAELEHQLRAMERSLEEAR---AERERARAEVGRAAQLLDVSLFELS 65 (79)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34555555567777777777777777777777752 1222223445666666666555554
No 98
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=43.32 E-value=4.3 Score=32.23 Aligned_cols=36 Identities=8% Similarity=0.011 Sum_probs=24.0
Q ss_pred cccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhh
Q 040121 19 CYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLR 59 (368)
Q Consensus 19 CR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~ 59 (368)
.-.||.+||..|...+.... .......|-.|-..+.
T Consensus 58 ~~~C~H~Fh~~Ci~~wl~~~-----~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 58 LTKCSHAFHLLCLLAMYCNG-----NKDGSLQCPSCKTIYG 93 (114)
T ss_dssp ESSSCCEECHHHHHHHHHHT-----CCSSCCBCTTTCCBSS
T ss_pred cCCCCCcccHHHHHHHHHcc-----cCCCCCcCCCCCCccC
Confidence 35799999999998765321 0133457888866554
No 99
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.82 E-value=4.6 Score=28.71 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=23.3
Q ss_pred CCCCCCCCCCcc--cccccccccCCceeeCCCCCcccc
Q 040121 1 MRSGCRLPFNNF--KRKRHNCYNYGMVFCHSSSSKKTL 36 (368)
Q Consensus 1 ~C~~C~~~F~~f--~rRRHHCR~CG~VfC~sCSs~~~~ 36 (368)
.|.+|...|..- ..+...-..||.+||..|...+..
T Consensus 17 ~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~ 54 (69)
T 2ea6_A 17 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 54 (69)
T ss_dssp CCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHH
T ss_pred CCcccCccccccccccCCeEeCCCCChhcHHHHHHHHH
Confidence 488887766511 011224468999999999877553
No 100
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=42.18 E-value=1.1e+02 Score=27.57 Aligned_cols=30 Identities=17% Similarity=0.157 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 040121 192 RVGQEVENHTRKAQLQEVELERTTKQLKEA 221 (368)
Q Consensus 192 ~L~qEV~~L~~k~~~q~~elq~~~kk~~Ea 221 (368)
-|-+|+..|.++.+..+.||+.++++++.+
T Consensus 24 ~L~~En~~L~~ql~~k~~ei~~L~~ql~sl 53 (190)
T 4emc_A 24 NLVNENFVLSEKLDTKATEIKQLQKQIDSL 53 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567888899999999999988887664
No 101
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.16 E-value=7.6 Score=28.28 Aligned_cols=48 Identities=13% Similarity=0.146 Sum_probs=30.0
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhh
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRK 60 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~ 60 (368)
.|.+|...|. -... ..--.||.+||..|...+... ...|-.|...+..
T Consensus 17 ~C~IC~~~~~-~~~~-~~~~~C~H~f~~~Ci~~~~~~----------~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 17 LCAVCLEDFK-PRDE-LGICPCKHAFHRKCLIKWLEV----------RKVCPLCNMPVLQ 64 (74)
T ss_dssp BCSSSCCBCC-SSSC-EEEETTTEEEEHHHHHHHHHH----------CSBCTTTCCBCSS
T ss_pred CCcCCCcccC-CCCc-EEEcCCCCEecHHHHHHHHHc----------CCcCCCcCccccc
Confidence 4889988775 2111 111269999999998776532 1267777655543
No 102
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=42.07 E-value=49 Score=25.84 Aligned_cols=50 Identities=20% Similarity=0.345 Sum_probs=34.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhC
Q 040121 197 VENHTRKAQLQEVELERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERL 253 (368)
Q Consensus 197 V~~L~~k~~~q~~elq~~~kk~~Ea~~lA~eEsaK~kAAKEvIKSLTaQLKdMAeKL 253 (368)
+++|++ -+.||..-++||++.+.--..|-+.+. ..|-.|..-.++|.+-|
T Consensus 27 l~sLrr----T~~EL~~G~~KL~~mi~~l~~E~~~l~---~ni~~lk~K~~EL~~~l 76 (78)
T 3iv1_A 27 LNALKR----TEEDLKKGHQKLEEMVTRLDQEVAEVD---KNIELLKKKDEELSSAL 76 (78)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTTS
T ss_pred HHHHHH----HHHHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Confidence 666654 356888999999998886666665553 45666777777775543
No 103
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=42.06 E-value=11 Score=31.19 Aligned_cols=14 Identities=36% Similarity=0.627 Sum_probs=10.5
Q ss_pred cccccccccCCcee
Q 040121 13 KRKRHNCYNYGMVF 26 (368)
Q Consensus 13 ~rRRHHCR~CG~Vf 26 (368)
.....-|+.||.+|
T Consensus 64 ~v~p~~C~~CG~~F 77 (105)
T 2gmg_A 64 LIKPAQCRKCGFVF 77 (105)
T ss_dssp EECCCBBTTTCCBC
T ss_pred EEECcChhhCcCee
Confidence 34457799999888
No 104
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.77 E-value=6.1 Score=28.29 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=19.8
Q ss_pred CCCCCCCCCcccccccccccCCceeeCCCCCccc
Q 040121 2 RSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKT 35 (368)
Q Consensus 2 C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~ 35 (368)
|.+|...|.. ..--.||.+||..|...+.
T Consensus 18 C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~ 46 (66)
T 2ecy_A 18 CEKCHLVLCS-----PKQTECGHRFCESCMAALL 46 (66)
T ss_dssp CTTTCCEESS-----CCCCSSSCCCCHHHHHHHH
T ss_pred CCCCChHhcC-----eeECCCCCHHHHHHHHHHH
Confidence 7788775541 1114799999999987654
No 105
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=41.74 E-value=4 Score=31.56 Aligned_cols=32 Identities=9% Similarity=-0.110 Sum_probs=22.0
Q ss_pred CCCCCCCCCcccccccccccCCceeeCCCCCccc
Q 040121 2 RSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKT 35 (368)
Q Consensus 2 C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~ 35 (368)
|.+|...|. -.. ....-.||.+||..|...+.
T Consensus 43 C~IC~~~~~-~~~-~~~~l~C~H~Fh~~Ci~~wl 74 (91)
T 2l0b_A 43 CPICCSEYV-KGD-VATELPCHHYFHKPCVSIWL 74 (91)
T ss_dssp ETTTTEECC-TTC-EEEEETTTEEEEHHHHHHHH
T ss_pred CcccChhhc-CCC-cEEecCCCChHHHHHHHHHH
Confidence 888987776 211 12224599999999987765
No 106
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=41.45 E-value=52 Score=25.34 Aligned_cols=23 Identities=4% Similarity=0.144 Sum_probs=15.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q 040121 197 VENHTRKAQLQEVELERTTKQLK 219 (368)
Q Consensus 197 V~~L~~k~~~q~~elq~~~kk~~ 219 (368)
|+.|..+.+.+|.+|++++.++.
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666667777776666654
No 107
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=40.70 E-value=11 Score=29.09 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=9.8
Q ss_pred ccccccccCCceeeCC
Q 040121 14 RKRHNCYNYGMVFCHS 29 (368)
Q Consensus 14 rRRHHCR~CG~VfC~s 29 (368)
.+.|-|..||+.|-..
T Consensus 26 ~~~h~C~~Cgk~F~~~ 41 (85)
T 2lv2_A 26 AECHLCPVCGESFASK 41 (85)
T ss_dssp CTTEECTTSCCEESSH
T ss_pred CCCEECCCCCCCcCcH
Confidence 3456677777766543
No 108
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=40.56 E-value=1.3e+02 Score=24.75 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=17.1
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHH
Q 040121 227 EETAKCKAAKEVIKSLTAQLKDMAE 251 (368)
Q Consensus 227 eEsaK~kAAKEvIKSLTaQLKdMAe 251 (368)
++.....+.-+-|+.|+.+++++-+
T Consensus 86 ~~~~~l~~~~~~l~~l~~~~~~~N~ 110 (157)
T 2fup_A 86 ADGAELLARGDELGELLERCQQANL 110 (157)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556677778888887777654
No 109
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=40.23 E-value=95 Score=31.72 Aligned_cols=58 Identities=14% Similarity=0.207 Sum_probs=33.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------Hhh----hhhhhHHHHHHHHHHHHHHHHHhC
Q 040121 196 EVENHTRKAQLQEVELERTTKQLKEAIAIAG-------EET----AKCKAAKEVIKSLTAQLKDMAERL 253 (368)
Q Consensus 196 EV~~L~~k~~~q~~elq~~~kk~~Ea~~lA~-------eEs----aK~kAAKEvIKSLTaQLKdMAeKL 253 (368)
+-..|..+.+.+..+.-...|++..+..-.. ||+ ++-+..|+-||.|.++++++.++|
T Consensus 78 ~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 78 ELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777777777777776543210 122 334455666777766555544443
No 110
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=40.02 E-value=8.7 Score=29.63 Aligned_cols=34 Identities=9% Similarity=0.088 Sum_probs=21.8
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccc
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTL 36 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~ 36 (368)
.|.+|-..|. .-. -..-..||+.||..|....+.
T Consensus 7 ~C~IC~~~~~-~~~-~~~l~~CgH~FC~~Cl~~~~~ 40 (94)
T 1wim_A 7 GCKLCLGEYP-VEQ-MTTIAQCQCIFCTLCLKQYVE 40 (94)
T ss_dssp CCSSSCCCCB-GGG-EEEETTTTEEEEHHHHHHHHH
T ss_pred CCcccCcccc-ccc-ceEcCCCCCcccHHHHHHHHH
Confidence 4888877665 210 011136999999999877554
No 111
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=39.95 E-value=17 Score=25.71 Aligned_cols=9 Identities=22% Similarity=0.623 Sum_probs=5.3
Q ss_pred CCCCCCCCC
Q 040121 2 RSGCRLPFN 10 (368)
Q Consensus 2 C~~C~~~F~ 10 (368)
|..|++.|.
T Consensus 20 C~~C~k~f~ 28 (74)
T 2lce_A 20 CDRCQASFR 28 (74)
T ss_dssp CTTSSCCBS
T ss_pred CCCCCceeC
Confidence 556666554
No 112
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=39.45 E-value=19 Score=27.55 Aligned_cols=13 Identities=15% Similarity=0.442 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHH
Q 040121 236 KEVIKSLTAQLKD 248 (368)
Q Consensus 236 KEvIKSLTaQLKd 248 (368)
++-|..|+.+|+.
T Consensus 56 r~~i~~L~~El~~ 68 (70)
T 1gd2_E 56 RQKVRQLEEELRI 68 (70)
T ss_dssp TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3355566665543
No 113
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=39.33 E-value=38 Score=22.59 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 040121 186 AKRTNDRVGQEVENHTRKAQLQEVELE 212 (368)
Q Consensus 186 lkk~n~~L~qEV~~L~~k~~~q~~elq 212 (368)
+++.|....++|+.|+.|--.++.+|.
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 566777777888888887777777664
No 114
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=39.28 E-value=8.9 Score=32.65 Aligned_cols=30 Identities=10% Similarity=0.046 Sum_probs=21.9
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCccc
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKT 35 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~ 35 (368)
.|.+|...|.. ..--.||.+||..|...+.
T Consensus 80 ~C~IC~~~~~~-----pv~~~CgH~fC~~Ci~~~~ 109 (150)
T 1z6u_A 80 MCVCCQELVYQ-----PVTTECFHNVCKDCLQRSF 109 (150)
T ss_dssp BCTTTSSBCSS-----EEECTTSCEEEHHHHHHHH
T ss_pred EeecCChhhcC-----CEEcCCCCchhHHHHHHHH
Confidence 48899886651 1125899999999987654
No 115
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=38.98 E-value=40 Score=28.82 Aligned_cols=57 Identities=19% Similarity=0.295 Sum_probs=40.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHHHHHHhC
Q 040121 197 VENHTRKAQLQEVELERTTKQLKEAIAIAGE-ETAKCKAAKEVIKSLTAQLKDMAERL 253 (368)
Q Consensus 197 V~~L~~k~~~q~~elq~~~kk~~Ea~~lA~e-EsaK~kAAKEvIKSLTaQLKdMAeKL 253 (368)
.+.|++..+....+..+..+.+++|.+.+.- |-+--.|||+-...|.+++.++-.+|
T Consensus 12 ~~~L~~el~~~~~~r~~~~~~i~~A~~~GDlsEnaey~aak~~q~~~e~ri~~L~~~L 69 (156)
T 2f23_A 12 YERLMQQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDIL 69 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777666666777777777877665431 55667788888888888777777666
No 116
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=38.72 E-value=41 Score=26.29 Aligned_cols=40 Identities=13% Similarity=0.196 Sum_probs=31.7
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 040121 182 LVDDAKRTNDRVGQEVENHTRKAQLQEVELERTTKQLKEA 221 (368)
Q Consensus 182 ~~d~lkk~n~~L~qEV~~L~~k~~~q~~elq~~~kk~~Ea 221 (368)
+...|.+.-+.|..+|+.|..+.+..+.+++.+++++.+.
T Consensus 66 ~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~ 105 (107)
T 1fxk_A 66 LTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777788889888888888888888888753
No 117
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=38.48 E-value=19 Score=23.82 Aligned_cols=10 Identities=30% Similarity=0.198 Sum_probs=7.1
Q ss_pred CCCCCCCCCC
Q 040121 1 MRSGCRLPFN 10 (368)
Q Consensus 1 ~C~~C~~~F~ 10 (368)
.|..|++.|.
T Consensus 6 ~C~~C~~~f~ 15 (57)
T 3uk3_C 6 ECSYCGKFFR 15 (57)
T ss_dssp BCTTTCCBCS
T ss_pred cCCCCcchhC
Confidence 3777777776
No 118
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=38.11 E-value=8.7 Score=26.85 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=8.3
Q ss_pred cccccccCCceeeC
Q 040121 15 KRHNCYNYGMVFCH 28 (368)
Q Consensus 15 RRHHCR~CG~VfC~ 28 (368)
+.+.|..||..|-.
T Consensus 13 k~~~C~~C~k~F~~ 26 (62)
T 1vd4_A 13 ASFKCPVCSSTFTD 26 (62)
T ss_dssp SEEECSSSCCEEEH
T ss_pred CCccCCCCCchhcc
Confidence 34566777766643
No 119
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.92 E-value=13 Score=26.54 Aligned_cols=9 Identities=33% Similarity=0.660 Sum_probs=3.9
Q ss_pred ccccccCCc
Q 040121 16 RHNCYNYGM 24 (368)
Q Consensus 16 RHHCR~CG~ 24 (368)
|++|..||.
T Consensus 37 R~~C~kCG~ 45 (50)
T 3j20_Y 37 RWACGKCGY 45 (50)
T ss_dssp EEECSSSCC
T ss_pred eEECCCCCC
Confidence 344444443
No 120
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=37.60 E-value=83 Score=24.30 Aligned_cols=44 Identities=16% Similarity=0.250 Sum_probs=32.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHH
Q 040121 197 VENHTRKAQLQEVELERTTKQLKEAIAIAGEETAKC-KAAKEVIK 240 (368)
Q Consensus 197 V~~L~~k~~~q~~elq~~~kk~~Ea~~lA~eEsaK~-kAAKEvIK 240 (368)
|-+|+++.++++.....+++++++-..+|.+=..|. ++|+-+.|
T Consensus 8 I~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~~knK~~Al~aLk 52 (79)
T 4abm_A 8 IQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHGTKNKRAALQALK 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 567778888888888888888888888888766554 35555554
No 121
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=37.44 E-value=12 Score=29.65 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=17.4
Q ss_pred CCC--CCCCCCcccccccccccCCceeeCCC
Q 040121 2 RSG--CRLPFNNFKRKRHNCYNYGMVFCHSS 30 (368)
Q Consensus 2 C~~--C~~~F~~f~rRRHHCR~CG~VfC~sC 30 (368)
|.. |++. . |+ -.+|+.||..||...
T Consensus 28 C~~~~Ck~~-~-~l--~f~C~~C~~~FC~~H 54 (86)
T 1wfe_A 28 CSFKGCTDV-E-LV--AVICPYCEKNFCLRH 54 (86)
T ss_dssp CCSTTCCCE-E-SS--CEECTTTCCEECGGG
T ss_pred CCCcCCCCC-C-cc--ceECCCCCccccccc
Confidence 555 7764 3 32 368999999999753
No 122
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=37.30 E-value=7.1 Score=29.71 Aligned_cols=30 Identities=10% Similarity=0.082 Sum_probs=20.3
Q ss_pred CCCCCCCCCcccccccccccCCceeeCCCCCccc
Q 040121 2 RSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKT 35 (368)
Q Consensus 2 C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~ 35 (368)
|.+|...|. .-..-..||..||..|...+.
T Consensus 16 C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~~ 45 (92)
T 3ztg_A 16 CLICKDIMT----DAVVIPCCGNSYCDECIRTAL 45 (92)
T ss_dssp ETTTTEECS----SCEECTTTCCEECHHHHHHHH
T ss_pred CCCCChhhc----CceECCCCCCHHHHHHHHHHH
Confidence 788877665 122223399999999987654
No 123
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=36.92 E-value=20 Score=23.95 Aligned_cols=10 Identities=20% Similarity=0.414 Sum_probs=7.5
Q ss_pred CCCCCCCCCC
Q 040121 1 MRSGCRLPFN 10 (368)
Q Consensus 1 ~C~~C~~~F~ 10 (368)
.|..|++.|.
T Consensus 4 ~C~~C~~~f~ 13 (60)
T 2adr_A 4 VCEVCTRAFA 13 (60)
T ss_dssp CCTTTCCCBS
T ss_pred cCCCCccccC
Confidence 4778888776
No 124
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=36.74 E-value=69 Score=32.72 Aligned_cols=22 Identities=9% Similarity=0.077 Sum_probs=17.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhC
Q 040121 232 CKAAKEVIKSLTAQLKDMAERL 253 (368)
Q Consensus 232 ~kAAKEvIKSLTaQLKdMAeKL 253 (368)
-+..|+-||.|.++|+++.++|
T Consensus 80 ~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 80 KEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888888888887
No 125
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=36.67 E-value=21 Score=23.58 Aligned_cols=10 Identities=10% Similarity=0.441 Sum_probs=7.9
Q ss_pred CCCCCCCCCC
Q 040121 1 MRSGCRLPFN 10 (368)
Q Consensus 1 ~C~~C~~~F~ 10 (368)
.|..|+..|.
T Consensus 3 ~C~~C~~~f~ 12 (57)
T 1bbo_A 3 ICEECGIRXK 12 (57)
T ss_dssp BCTTTCCBCS
T ss_pred cCCCCcCcCC
Confidence 3888888886
No 126
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=36.63 E-value=49 Score=26.94 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 040121 190 NDRVGQEVENHTRKAQLQEVELERTTKQLKEAI 222 (368)
Q Consensus 190 n~~L~qEV~~L~~k~~~q~~elq~~~kk~~Ea~ 222 (368)
-..|.+|+++|.++-+.+|.-|+.+++++++..
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 347889999999999999988888888888754
No 127
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=36.60 E-value=1.9e+02 Score=24.37 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHH
Q 040121 195 QEVENHTRKAQLQEVELERTTKQLKEAIAIAGEETAKC-KAAKEVIKSLTAQLKDM 249 (368)
Q Consensus 195 qEV~~L~~k~~~q~~elq~~~kk~~Ea~~lA~eEsaK~-kAAKEvIKSLTaQLKdM 249 (368)
++++.|.++.+..+.||..++.++.++- +.-|++.|- ...++=|..|..|++.+
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~-~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQ-IKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477777777777777777777766543 223333322 33566667777666665
No 128
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=36.56 E-value=1.3e+02 Score=24.47 Aligned_cols=69 Identities=17% Similarity=0.199 Sum_probs=39.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHH----------HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 040121 182 LVDDAKRTNDRVGQEVENHTRKAQLQEVELERTT----------KQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAE 251 (368)
Q Consensus 182 ~~d~lkk~n~~L~qEV~~L~~k~~~q~~elq~~~----------kk~~Ea~~lA~eEsaK~kAAKEvIKSLTaQLKdMAe 251 (368)
-.+.|++.-+.|..|.+.|+++-+.+|.+|.+-. |=|+=++..|++ |- +.+++.|..|.+++..+-+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~-a~--~~~~~~~e~Lq~E~erLr~ 89 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSV-AR--QRLREDHSQLQAECERLRG 89 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHH-HH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHH-HH--HHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777777777776511 111111222221 11 2246788888886655555
Q ss_pred hC
Q 040121 252 RL 253 (368)
Q Consensus 252 KL 253 (368)
++
T Consensus 90 ~v 91 (100)
T 1go4_E 90 LL 91 (100)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 129
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=36.39 E-value=5.7 Score=28.49 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=23.5
Q ss_pred CCCCCCCCCCccc--ccccccccCCceeeCCCCCcccc
Q 040121 1 MRSGCRLPFNNFK--RKRHNCYNYGMVFCHSSSSKKTL 36 (368)
Q Consensus 1 ~C~~C~~~F~~f~--rRRHHCR~CG~VfC~sCSs~~~~ 36 (368)
.|.+|...|..-. .+......||.+||..|...+..
T Consensus 12 ~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~ 49 (71)
T 3ng2_A 12 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 49 (71)
T ss_dssp BCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHH
T ss_pred CCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHH
Confidence 3888887665110 11124568999999999877553
No 130
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=35.89 E-value=86 Score=24.79 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 040121 192 RVGQEVENHTRKAQLQEVELERTTKQLKEAIAIA 225 (368)
Q Consensus 192 ~L~qEV~~L~~k~~~q~~elq~~~kk~~Ea~~lA 225 (368)
--.+|.+.|.++.+.++.||..+++..++...||
T Consensus 43 eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 43 EALKENEKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345567777777777777777777666665555
No 131
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=35.33 E-value=14 Score=28.60 Aligned_cols=32 Identities=16% Similarity=0.354 Sum_probs=22.0
Q ss_pred CCCCCCCCCc-ccccccccccCCceeeCCCCCc
Q 040121 2 RSGCRLPFNN-FKRKRHNCYNYGMVFCHSSSSK 33 (368)
Q Consensus 2 C~~C~~~F~~-f~rRRHHCR~CG~VfC~sCSs~ 33 (368)
|..|...|.. -..++..|..||..||..|-..
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~ 60 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQ 60 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSB
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCc
Confidence 6667665430 0134578999999999999754
No 132
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=35.29 E-value=78 Score=23.22 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Q 040121 193 VGQEVENHTRKAQLQEVELERTT 215 (368)
Q Consensus 193 L~qEV~~L~~k~~~q~~elq~~~ 215 (368)
|.+|...|+.+.+.++.|++-+.
T Consensus 35 L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 35 LEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444443
No 133
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=34.91 E-value=2.1e+02 Score=24.84 Aligned_cols=46 Identities=26% Similarity=0.327 Sum_probs=28.5
Q ss_pred HhHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhHH--------------HHHHHHHHHHHHH
Q 040121 204 AQLQEVELERTTKQ-LKEAIAIAGEETAKCKAAK--------------EVIKSLTAQLKDM 249 (368)
Q Consensus 204 ~~~q~~elq~~~kk-~~Ea~~lA~eEsaK~kAAK--------------EvIKSLTaQLKdM 249 (368)
....+.||+.++.. .+||-.|++++--.+-+++ .+|.+|..||.++
T Consensus 81 ~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~L 141 (154)
T 2ocy_A 81 ADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNL 141 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666554 4788889888765544444 4556666665555
No 134
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=34.41 E-value=47 Score=24.34 Aligned_cols=21 Identities=10% Similarity=0.191 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 040121 193 VGQEVENHTRKAQLQEVELER 213 (368)
Q Consensus 193 L~qEV~~L~~k~~~q~~elq~ 213 (368)
|.++|+.|+.+-..+..+|+.
T Consensus 28 Le~~v~~L~~~n~~L~~ei~~ 48 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEIAN 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443333333333
No 135
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=34.39 E-value=95 Score=31.69 Aligned_cols=27 Identities=4% Similarity=-0.076 Sum_probs=18.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 040121 197 VENHTRKAQLQEVELERTTKQLKEAIA 223 (368)
Q Consensus 197 V~~L~~k~~~q~~elq~~~kk~~Ea~~ 223 (368)
-+.|..+.+.+..+.-...|++-.+..
T Consensus 46 ~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 46 WRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566666677777777777777766554
No 136
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=34.38 E-value=1.7e+02 Score=24.48 Aligned_cols=7 Identities=29% Similarity=0.278 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 040121 190 NDRVGQE 196 (368)
Q Consensus 190 n~~L~qE 196 (368)
+.+|.++
T Consensus 27 T~lLq~q 33 (121)
T 3mq7_A 27 THLLQQE 33 (121)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344443
No 137
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=34.36 E-value=95 Score=24.47 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHhC
Q 040121 235 AKEVIKSLTAQLKDMAERL 253 (368)
Q Consensus 235 AKEvIKSLTaQLKdMAeKL 253 (368)
..+.|+.|..+++.+.+++
T Consensus 82 ie~~i~~le~~~~~l~~~l 100 (117)
T 2zqm_A 82 LEVRLNALERQEKKLNEKL 100 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555666666655554443
No 138
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=34.16 E-value=78 Score=21.99 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 040121 193 VGQEVENHTRKAQLQEVELERTTKQLKE 220 (368)
Q Consensus 193 L~qEV~~L~~k~~~q~~elq~~~kk~~E 220 (368)
|.|-++..-+..+.-+.+|-++++++++
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlke 34 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444445555555444
No 139
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.79 E-value=12 Score=29.16 Aligned_cols=31 Identities=3% Similarity=-0.090 Sum_probs=20.9
Q ss_pred CCCCCCCCCCcccccccccc-cCCceeeCCCCCcccc
Q 040121 1 MRSGCRLPFNNFKRKRHNCY-NYGMVFCHSSSSKKTL 36 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR-~CG~VfC~sCSs~~~~ 36 (368)
.|.+|...|. --..- .||.+||..|...+..
T Consensus 9 ~CPI~~~~~~-----dPV~~~~cGh~f~r~cI~~~l~ 40 (94)
T 2yu4_A 9 TCPITKEEMK-----KPVKNKVCGHTYEEDAIVRMIE 40 (94)
T ss_dssp BCTTTCSBCS-----SEEEESSSCCEEEHHHHHHHHH
T ss_pred ECcCcCchhc-----CCEEcCCCCCeecHHHHHHHHH
Confidence 3788877665 13333 4999999998766543
No 140
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=33.67 E-value=1.1e+02 Score=24.17 Aligned_cols=47 Identities=17% Similarity=0.238 Sum_probs=32.4
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 040121 180 KILVDDAKRTNDRVGQEVENHTRKAQLQEVELERTTKQLKEAIAIAG 226 (368)
Q Consensus 180 ~~~~d~lkk~n~~L~qEV~~L~~k~~~q~~elq~~~kk~~Ea~~lA~ 226 (368)
+.+.+.=++.-+--.+|.+.|....+..+.||..+++..++-..||.
T Consensus 23 k~lAE~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~ 69 (83)
T 1wlq_A 23 KEVAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAE 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444554555566788888888888888888888877666553
No 141
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=33.54 E-value=46 Score=24.07 Aligned_cols=18 Identities=11% Similarity=0.025 Sum_probs=7.0
Q ss_pred HHHHHHHHhHHHHHHHHH
Q 040121 197 VENHTRKAQLQEVELERT 214 (368)
Q Consensus 197 V~~L~~k~~~q~~elq~~ 214 (368)
|+.|+.+-..+..+|+.+
T Consensus 31 ~~~L~~~n~~L~~~i~~L 48 (61)
T 1t2k_D 31 AEDLSSLNGQLQSEVTLL 48 (61)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444333333333333
No 142
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=33.30 E-value=91 Score=31.33 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=19.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhC
Q 040121 230 AKCKAAKEVIKSLTAQLKDMAERL 253 (368)
Q Consensus 230 aK~kAAKEvIKSLTaQLKdMAeKL 253 (368)
++-+..|+-||.|.++++++.++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 76 AKSREIVKRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567888899999999988888
No 143
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=33.27 E-value=1e+02 Score=26.85 Aligned_cols=71 Identities=8% Similarity=0.103 Sum_probs=46.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----------HHHHHHHhhhhhhh-HHHHHHHHHHHHHHHHHh
Q 040121 184 DDAKRTNDRVGQEVENHTRKAQLQEVELERTTKQLKE----------AIAIAGEETAKCKA-AKEVIKSLTAQLKDMAER 252 (368)
Q Consensus 184 d~lkk~n~~L~qEV~~L~~k~~~q~~elq~~~kk~~E----------a~~lA~eEsaK~kA-AKEvIKSLTaQLKdMAeK 252 (368)
+.+.++-..|..|...|+.++..++.+|+.-.|-++. ...++-+...|.++ .++.|.-+-.+-..=|++
T Consensus 64 ~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~ 143 (152)
T 3a7p_A 64 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKETEA 143 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677777788888888888777766654433 23445555666666 677777777777777777
Q ss_pred CC
Q 040121 253 LP 254 (368)
Q Consensus 253 Lp 254 (368)
+.
T Consensus 144 MN 145 (152)
T 3a7p_A 144 MN 145 (152)
T ss_dssp C-
T ss_pred HH
Confidence 74
No 144
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=33.20 E-value=1.3e+02 Score=23.33 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 040121 193 VGQEVENHTRKAQLQEVELERTTKQLKE 220 (368)
Q Consensus 193 L~qEV~~L~~k~~~q~~elq~~~kk~~E 220 (368)
|.+++..|.++.+..+.++++...-++|
T Consensus 13 lq~~~~~l~~q~~~l~~~~~e~~~~~~E 40 (107)
T 1fxk_A 13 LQQQAQAISVQKQTVEMQINETQKALEE 40 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666665555544444
No 145
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=33.06 E-value=1.4e+02 Score=33.45 Aligned_cols=14 Identities=21% Similarity=0.553 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHh
Q 040121 239 IKSLTAQLKDMAER 252 (368)
Q Consensus 239 IKSLTaQLKdMAeK 252 (368)
++.|..+|.++.+.
T Consensus 929 l~ele~elee~ee~ 942 (1184)
T 1i84_S 929 LHEMEARIEEEEER 942 (1184)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 146
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=32.92 E-value=6.5 Score=27.45 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=23.3
Q ss_pred CCCCCCCCCCcc--cccccccccCCceeeCCCCCcccc
Q 040121 1 MRSGCRLPFNNF--KRKRHNCYNYGMVFCHSSSSKKTL 36 (368)
Q Consensus 1 ~C~~C~~~F~~f--~rRRHHCR~CG~VfC~sCSs~~~~ 36 (368)
.|.+|...|..- ..+....-.||.+||..|...+..
T Consensus 5 ~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~ 42 (64)
T 2xeu_A 5 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 42 (64)
T ss_dssp BCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHH
T ss_pred CCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHH
Confidence 378887766511 011224568999999999877553
No 147
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=32.89 E-value=1e+02 Score=24.65 Aligned_cols=28 Identities=11% Similarity=0.037 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 040121 193 VGQEVENHTRKAQLQEVELERTTKQLKE 220 (368)
Q Consensus 193 L~qEV~~L~~k~~~q~~elq~~~kk~~E 220 (368)
.-+||+.++...+..+..|+++.+.-++
T Consensus 10 F~~~v~~I~~~i~~i~~~v~~l~~~~~~ 37 (127)
T 1ez3_A 10 FFEQVEEIRGFIDKIAENVEEVKRKHSA 37 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455676666666666666666444443
No 148
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=32.86 E-value=46 Score=33.09 Aligned_cols=24 Identities=38% Similarity=0.428 Sum_probs=19.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhC
Q 040121 230 AKCKAAKEVIKSLTAQLKDMAERL 253 (368)
Q Consensus 230 aK~kAAKEvIKSLTaQLKdMAeKL 253 (368)
++-+..|+-||.|.++++++.++|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~ 94 (421)
T 1ses_A 71 ARGKALGEEAKRLEEALREKEARL 94 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888999999999998888
No 149
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=32.64 E-value=76 Score=25.37 Aligned_cols=30 Identities=13% Similarity=0.100 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040121 188 RTNDRVGQEVENHTRKAQLQEVELERTTKQ 217 (368)
Q Consensus 188 k~n~~L~qEV~~L~~k~~~q~~elq~~~kk 217 (368)
..+..|..||+.|++.-.....|+..++++
T Consensus 55 ~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k 84 (90)
T 2wt7_B 55 NEKTQLIQQVEQLKQEVSRLARERDAYKVK 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344433333333333333333
No 150
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=32.59 E-value=7.9 Score=27.57 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=20.7
Q ss_pred CCCCCCC-CCCcccccccccccCCceeeCCCCCccc
Q 040121 1 MRSGCRL-PFNNFKRKRHNCYNYGMVFCHSSSSKKT 35 (368)
Q Consensus 1 ~C~~C~~-~F~~f~rRRHHCR~CG~VfC~sCSs~~~ 35 (368)
.|.+|.. .|..- ..+..=-.||.+||..|.....
T Consensus 5 ~C~IC~~~~~~~~-~~~~~~~~CgH~fC~~Ci~~~~ 39 (65)
T 1g25_A 5 GCPRCKTTKYRNP-SLKLMVNVCGHTLCESCVDLLF 39 (65)
T ss_dssp CCSTTTTHHHHCS-SCCEEECTTCCCEEHHHHHHHH
T ss_pred cCCcCCCCccCCC-ccCeecCCCCCHhHHHHHHHHH
Confidence 4788876 44311 1111124799999999987653
No 151
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=32.47 E-value=61 Score=30.98 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Q 040121 195 QEVENHTRKAQLQEVELERTTKQLK 219 (368)
Q Consensus 195 qEV~~L~~k~~~q~~elq~~~kk~~ 219 (368)
+|+++|+.+.+.++.||++++++++
T Consensus 185 ~eie~L~~~~~~L~eEi~~Le~~~e 209 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQIARLEQERS 209 (315)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888888888866553
No 152
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=32.15 E-value=1.2e+02 Score=33.99 Aligned_cols=12 Identities=33% Similarity=0.587 Sum_probs=4.8
Q ss_pred HHHHHHHHHHhC
Q 040121 242 LTAQLKDMAERL 253 (368)
Q Consensus 242 LTaQLKdMAeKL 253 (368)
|..+|+++.++|
T Consensus 925 Le~~l~ele~el 936 (1184)
T 1i84_S 925 LEEILHEMEARI 936 (1184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 153
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=31.92 E-value=1.3e+02 Score=21.14 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=22.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 040121 197 VENHTRKAQLQEVELERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLK 247 (368)
Q Consensus 197 V~~L~~k~~~q~~elq~~~kk~~Ea~~lA~eEsaK~kAAKEvIKSLTaQLK 247 (368)
|+.+..++.....+++.++.++..+ -+..+.+.|=|..|-.|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~k~~~~~~-------~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 14 VEELTEKCSLKTDEFLKAKEKINEI-------FEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555443 3444555555555544443
No 154
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=31.82 E-value=2.2e+02 Score=23.48 Aligned_cols=8 Identities=38% Similarity=0.796 Sum_probs=3.4
Q ss_pred HHHHHHHh
Q 040121 245 QLKDMAER 252 (368)
Q Consensus 245 QLKdMAeK 252 (368)
+|++|-++
T Consensus 84 ~l~el~~r 91 (129)
T 2fxo_A 84 KVKEMNKR 91 (129)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 155
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=31.62 E-value=2.9e+02 Score=25.14 Aligned_cols=71 Identities=13% Similarity=0.151 Sum_probs=41.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------HHHhhhhhhhHHHHHHHHHHHHHHHHHhC
Q 040121 183 VDDAKRTNDRVGQEVENHTRKAQLQEVELERTTKQLKEAIAI--------AGEETAKCKAAKEVIKSLTAQLKDMAERL 253 (368)
Q Consensus 183 ~d~lkk~n~~L~qEV~~L~~k~~~q~~elq~~~kk~~Ea~~l--------A~eEsaK~kAAKEvIKSLTaQLKdMAeKL 253 (368)
.+-+++-+-.|+.+++.|.+.....+.+=.++.++|+.|+-- -+.|.-+.|-++.-+=-+.+||..++-+|
T Consensus 9 ~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rl 87 (218)
T 3frt_A 9 KELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGM 87 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466888888899888888776655555555555566555433 33333333322222223445777777665
No 156
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.49 E-value=1.2e+02 Score=25.94 Aligned_cols=50 Identities=26% Similarity=0.230 Sum_probs=34.7
Q ss_pred HhHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhC
Q 040121 204 AQLQEVELERTTKQ-LKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERL 253 (368)
Q Consensus 204 ~~~q~~elq~~~kk-~~Ea~~lA~eEsaK~kAAKEvIKSLTaQLKdMAeKL 253 (368)
....+.||+.++.. .+||-.|++++--.+-+++.=.+.|-.||+|--..|
T Consensus 69 ~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll 119 (135)
T 2e7s_A 69 ADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLL 119 (135)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666665554 478888998887777777777778888887764444
No 157
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=31.31 E-value=14 Score=31.19 Aligned_cols=44 Identities=16% Similarity=0.313 Sum_probs=29.5
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHh
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKL 58 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L 58 (368)
.|.+|...|. .-.. -.||.+||..|...+.. .....|-.|...+
T Consensus 33 ~C~IC~~~~~----~pv~-~~CgH~FC~~Ci~~~~~---------~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 33 LCSACRNVLR----RPFQ-AQCGHRYCSFCLASILS---------SGPQNCAACVHEG 76 (141)
T ss_dssp BCTTTCSBCS----SEEE-CTTSCEEEHHHHHHHGG---------GSCEECHHHHHTT
T ss_pred CCCCCChhhc----CcEE-CCCCCccCHHHHHHHHh---------cCCCCCCCCCCcc
Confidence 4888887665 1122 48999999999877542 1124788887754
No 158
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=31.05 E-value=15 Score=29.27 Aligned_cols=31 Identities=10% Similarity=0.102 Sum_probs=21.8
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccc
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTL 36 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~ 36 (368)
.|.+|...|.. -.. -.||.+||..|...+..
T Consensus 25 ~C~IC~~~~~~----p~~-~~CgH~fC~~Ci~~~~~ 55 (116)
T 1rmd_A 25 SCQICEHILAD----PVE-TSCKHLFCRICILRCLK 55 (116)
T ss_dssp BCTTTCSBCSS----EEE-CTTSCEEEHHHHHHHHH
T ss_pred CCCCCCcHhcC----cEE-cCCCCcccHHHHHHHHh
Confidence 38889876651 111 47999999999876543
No 159
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=30.66 E-value=15 Score=29.49 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=21.8
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCcccc
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTL 36 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~ 36 (368)
.|.+|...|.. -.. -.||.+||..|...+..
T Consensus 20 ~C~IC~~~~~~----p~~-~~CgH~fC~~Ci~~~~~ 50 (118)
T 3hct_A 20 ECPICLMALRE----AVQ-TPCGHRFCKACIIKSIR 50 (118)
T ss_dssp BCTTTCSBCSS----EEE-CTTSCEEEHHHHHHHHH
T ss_pred CCCcCChhhcC----eEE-CCcCChhhHHHHHHHHh
Confidence 48889876651 122 37999999999876543
No 160
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=30.35 E-value=5.1 Score=32.93 Aligned_cols=49 Identities=18% Similarity=0.396 Sum_probs=33.5
Q ss_pred CCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhhccC
Q 040121 2 RSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKAFH 63 (368)
Q Consensus 2 C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~~~e 63 (368)
|..|+.||. ..- ---.|..+||..|..... .+....|..|-..++.+..
T Consensus 4 C~~C~~Pi~-iyg---RmIPCkHvFCydCa~~~~---------~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 4 CDKCGLPIK-VYG---RMIPCKHVFCYDCAILHE---------KKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp CTTTCSBCS-EEE---EEETTCCEEEHHHHHHHH---------HTTCCBCTTTCCBCSEEEE
T ss_pred cCccCCCeE-EEe---eeccccccHHHHHHHHHH---------hccCCCCcCcCCeeeeeEE
Confidence 889999998 533 346888899999975422 1334567777777666544
No 161
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=29.98 E-value=19 Score=27.63 Aligned_cols=10 Identities=20% Similarity=0.129 Sum_probs=4.5
Q ss_pred cccccCCcee
Q 040121 17 HNCYNYGMVF 26 (368)
Q Consensus 17 HHCR~CG~Vf 26 (368)
+.|..||+.|
T Consensus 35 ~~C~~C~k~F 44 (96)
T 2ctd_A 35 VSCPTCQAVG 44 (96)
T ss_dssp EECTTTCSCE
T ss_pred cCCCCCCCCc
Confidence 3444444444
No 162
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=29.92 E-value=22 Score=24.79 Aligned_cols=12 Identities=8% Similarity=0.246 Sum_probs=5.7
Q ss_pred ccccccCCceee
Q 040121 16 RHNCYNYGMVFC 27 (368)
Q Consensus 16 RHHCR~CG~VfC 27 (368)
.+.|..||..|-
T Consensus 9 ~~~C~~C~k~f~ 20 (70)
T 1x5w_A 9 PEKCSECSYSCS 20 (70)
T ss_dssp SEECSSSSCEES
T ss_pred CeECCCCCcccC
Confidence 344555555443
No 163
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=29.85 E-value=1.6e+02 Score=37.08 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=22.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 040121 197 VENHTRKAQLQEVELERTTKQLKEAIAIA 225 (368)
Q Consensus 197 V~~L~~k~~~q~~elq~~~kk~~Ea~~lA 225 (368)
|+.|+.+...++.+|++.++++++++...
T Consensus 1936 V~~l~~~L~~~~~~L~~k~~ea~~~l~~i 1964 (3245)
T 3vkg_A 1936 VKDLQVSLAQKNRELDVKNEQANQKLKQM 1964 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888888777765443
No 164
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=29.81 E-value=2e+02 Score=22.58 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=9.7
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 040121 197 VENHTRKAQLQEVELERTT 215 (368)
Q Consensus 197 V~~L~~k~~~q~~elq~~~ 215 (368)
|..|.++-..++.+|+.++
T Consensus 25 VR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 25 VRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5555555555555544443
No 165
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.61 E-value=21 Score=25.40 Aligned_cols=9 Identities=11% Similarity=0.209 Sum_probs=4.9
Q ss_pred CCCCCCCCC
Q 040121 2 RSGCRLPFN 10 (368)
Q Consensus 2 C~~C~~~F~ 10 (368)
|..|++.|.
T Consensus 10 C~~C~k~f~ 18 (78)
T 2d9h_A 10 CEICGFTCR 18 (78)
T ss_dssp CSSSCCEES
T ss_pred CCCCCCeeC
Confidence 555555554
No 166
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=29.48 E-value=42 Score=26.20 Aligned_cols=13 Identities=15% Similarity=0.148 Sum_probs=5.1
Q ss_pred HHHHHHHHhHHHH
Q 040121 197 VENHTRKAQLQEV 209 (368)
Q Consensus 197 V~~L~~k~~~q~~ 209 (368)
|+.|+-+-+.+..
T Consensus 39 vdELt~E~e~l~~ 51 (77)
T 2w83_C 39 VDELTCEKDVLQG 51 (77)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHH
Confidence 4444443333333
No 167
>2gww_B IPAA; protein complex, cell adhesion, structural protein; 2.72A {Shigella flexneri}
Probab=29.47 E-value=25 Score=22.24 Aligned_cols=25 Identities=40% Similarity=0.504 Sum_probs=16.9
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHH
Q 040121 225 AGEETAKCKAAKEVIKSLTAQLKDM 249 (368)
Q Consensus 225 A~eEsaK~kAAKEvIKSLTaQLKdM 249 (368)
.+|.----||||+|--||..-||.+
T Consensus 5 taennniykaakdvttslskvlkni 29 (30)
T 2gww_B 5 TAENNNIYKAAKDVTTSLSKVLKNI 29 (30)
T ss_dssp ----CHHHHHHHHHHHHHHHHHGGG
T ss_pred ccccchHHHHHHHHHHHHHHHHHcc
Confidence 3455555799999999998877753
No 168
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=29.07 E-value=1.5e+02 Score=27.06 Aligned_cols=46 Identities=20% Similarity=0.246 Sum_probs=32.5
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 040121 180 KILVDDAKRTNDRVGQEVENHTRKAQLQEVELERTTKQLKEAIAIA 225 (368)
Q Consensus 180 ~~~~d~lkk~n~~L~qEV~~L~~k~~~q~~elq~~~kk~~Ea~~lA 225 (368)
+.+.+.=++.-+--.+|.+.|..+.+.++.||..+++..++.-.||
T Consensus 100 k~lAE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLa 145 (209)
T 2wvr_A 100 KEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVA 145 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555556688888888888888888888888776655
No 169
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=28.79 E-value=21 Score=29.29 Aligned_cols=23 Identities=13% Similarity=0.330 Sum_probs=14.3
Q ss_pred CCCCCCCCCcccccccccccCCce
Q 040121 2 RSGCRLPFNNFKRKRHNCYNYGMV 25 (368)
Q Consensus 2 C~~C~~~F~~f~rRRHHCR~CG~V 25 (368)
|..|+.+.. +....+||..|+.-
T Consensus 35 CP~Cq~eL~-~~g~~~hC~~C~~~ 57 (101)
T 2jne_A 35 CPQCQHVLD-QDNGHARCRSCGEF 57 (101)
T ss_dssp CSSSCSBEE-EETTEEEETTTCCE
T ss_pred CccCCCcce-ecCCEEECccccch
Confidence 777777666 54455556666653
No 170
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.66 E-value=15 Score=27.85 Aligned_cols=12 Identities=17% Similarity=0.191 Sum_probs=6.3
Q ss_pred ccccccCCceee
Q 040121 16 RHNCYNYGMVFC 27 (368)
Q Consensus 16 RHHCR~CG~VfC 27 (368)
.+.|..||+.|-
T Consensus 24 ~~~C~~C~k~f~ 35 (98)
T 2gqj_A 24 EAVCPTCNVVTR 35 (98)
T ss_dssp CCCCTTTCCCCS
T ss_pred CcCCCCCCCChh
Confidence 445555555553
No 171
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=28.26 E-value=24 Score=24.82 Aligned_cols=13 Identities=31% Similarity=0.608 Sum_probs=6.6
Q ss_pred cccccccCCceee
Q 040121 15 KRHNCYNYGMVFC 27 (368)
Q Consensus 15 RRHHCR~CG~VfC 27 (368)
+.+.|..||..|-
T Consensus 13 k~~~C~~C~k~f~ 25 (72)
T 1x6e_A 13 KPYGCVECGKAFS 25 (72)
T ss_dssp CCEECSSSCCEES
T ss_pred CCccCCCCCCccC
Confidence 3455555555543
No 172
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=28.03 E-value=18 Score=27.65 Aligned_cols=29 Identities=10% Similarity=-0.097 Sum_probs=18.4
Q ss_pred CCCCCCCCCcccccccccccCCceeeCCCCCccc
Q 040121 2 RSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKT 35 (368)
Q Consensus 2 C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~ 35 (368)
|.+|...|. --..-.||.+||..|...+.
T Consensus 17 CpI~~~~m~-----dPV~~~cGhtf~r~~I~~~l 45 (85)
T 2kr4_A 17 DPLMDTLMT-----DPVRLPSGTVMDRSIILRHL 45 (85)
T ss_dssp CTTTCSBCS-----SEEECTTSCEEEHHHHHHHH
T ss_pred CcccCchhc-----CCeECCCCCEECHHHHHHHH
Confidence 666766554 23334588888888876544
No 173
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=27.92 E-value=86 Score=31.10 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHhC
Q 040121 234 AAKEVIKSLTAQLKDMAERL 253 (368)
Q Consensus 234 AAKEvIKSLTaQLKdMAeKL 253 (368)
+.++-+|.|.++||++.+++
T Consensus 72 ~l~~~~~~~~~~~~~~~~~~ 91 (425)
T 2dq3_A 72 EIQNRVKELKEEIDRLEEEL 91 (425)
T ss_dssp TSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556777888888887766
No 174
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=27.92 E-value=27 Score=28.90 Aligned_cols=15 Identities=13% Similarity=0.164 Sum_probs=10.7
Q ss_pred CCCCCCCCCCccccc
Q 040121 1 MRSGCRLPFNNFKRK 15 (368)
Q Consensus 1 ~C~~C~~~F~~f~rR 15 (368)
.|..|+..=+.+++|
T Consensus 7 ~C~~Cg~~~Tp~WRr 21 (115)
T 4hc9_A 7 ECVNCGATSTPLWRR 21 (115)
T ss_dssp CCTTTCCSCCSSCEE
T ss_pred CCCCCCCccCCcceE
Confidence 488898877756554
No 175
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=27.74 E-value=37 Score=37.97 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHH
Q 040121 234 AAKEVIKSLTAQLKDMA 250 (368)
Q Consensus 234 AAKEvIKSLTaQLKdMA 250 (368)
++++-|++|+.++.++-
T Consensus 981 ~~~~~v~~L~~e~~~l~ 997 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLR 997 (1080)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455666666554443
No 176
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=27.37 E-value=3e+02 Score=23.71 Aligned_cols=54 Identities=37% Similarity=0.297 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH-------HH-HHHHHHHHHHhC
Q 040121 193 VGQEVENHTRKAQLQEVELERTTKQLKEAIAIAGEETAKCKAAKEVI-------KS-LTAQLKDMAERL 253 (368)
Q Consensus 193 L~qEV~~L~~k~~~q~~elq~~~kk~~Ea~~lA~eEsaK~kAAKEvI-------KS-LTaQLKdMAeKL 253 (368)
..||.+-|++-.+..+.+-+-++|.+++. +.-+|.|+|-+ |. =.++|.+|-|||
T Consensus 60 ks~Ea~~lk~laekrehe~EvlqKa~Een-------~~F~k~aeEkL~~KME~~kEnReA~laal~erL 121 (143)
T 3ryc_E 60 KYQEAELLKHLAEKREHEREVIQKAIEEN-------NNFIKMAKEKLAQKMESNKENREAHLAAMLERL 121 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 55666666666555555555555555433 22333333332 22 124677777776
No 177
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=27.34 E-value=17 Score=28.91 Aligned_cols=29 Identities=7% Similarity=-0.101 Sum_probs=18.7
Q ss_pred CCCCCCCCCcccccccccccCCceeeCCCCCccc
Q 040121 2 RSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKT 35 (368)
Q Consensus 2 C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~ 35 (368)
|.+|...|. --..-.||.+||..|...+.
T Consensus 32 CpI~~~~m~-----dPV~~~cGhtf~r~~I~~~l 60 (100)
T 2kre_A 32 DPLMDTLMT-----DPVRLPSGTIMDRSIILRHL 60 (100)
T ss_dssp CTTTCSBCS-----SEEEETTTEEEEHHHHHHHT
T ss_pred CcCccCccc-----CCeECCCCCEEchHHHHHHH
Confidence 667766554 23334588888888876544
No 178
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=27.04 E-value=17 Score=30.45 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=6.3
Q ss_pred cccccCCceeeC
Q 040121 17 HNCYNYGMVFCH 28 (368)
Q Consensus 17 HHCR~CG~VfC~ 28 (368)
.+|+.||.+|-.
T Consensus 79 W~C~~Cgk~fAG 90 (116)
T 3cc2_Z 79 WQCSYCDYKFTG 90 (116)
T ss_dssp EEETTTCCEEEC
T ss_pred EECCCCCCEEEC
Confidence 455555555544
No 179
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=26.88 E-value=31 Score=26.80 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=14.0
Q ss_pred CCCCCCCCCcccccccccccCCc----eeeCCCC
Q 040121 2 RSGCRLPFNNFKRKRHNCYNYGM----VFCHSSS 31 (368)
Q Consensus 2 C~~C~~~F~~f~rRRHHCR~CG~----VfC~sCS 31 (368)
|.+|.+ .. +...|++|..|.. -+|..|-
T Consensus 24 Cd~C~~-~p-I~G~RykC~~C~d~~~yDLC~~C~ 55 (82)
T 2fc7_A 24 CDNCGI-EP-IQGVRWHCQDCPPEMSLDFCDSCS 55 (82)
T ss_dssp CSSSCC-SS-EESCEEEESSSCSSSCCEEEGGGT
T ss_pred CCCCCC-Cc-ceeceEECCcCCCCcceecHHHHH
Confidence 566654 11 2334566666644 2555554
No 180
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.86 E-value=20 Score=24.64 Aligned_cols=12 Identities=25% Similarity=0.827 Sum_probs=6.1
Q ss_pred ccccccCCceee
Q 040121 16 RHNCYNYGMVFC 27 (368)
Q Consensus 16 RHHCR~CG~VfC 27 (368)
.+.|..||..|-
T Consensus 18 ~~~C~~C~k~f~ 29 (73)
T 2ctu_A 18 SQKCSKCGIIFI 29 (73)
T ss_dssp EEECSSSCCEEE
T ss_pred CeeCCcccchhC
Confidence 345555555543
No 181
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=26.67 E-value=24 Score=23.55 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=7.9
Q ss_pred cccccccCCceeeC
Q 040121 15 KRHNCYNYGMVFCH 28 (368)
Q Consensus 15 RRHHCR~CG~VfC~ 28 (368)
|.+.|..||..|-.
T Consensus 11 k~~~C~~C~k~f~~ 24 (54)
T 2eps_A 11 KPYICQSCGKGFSR 24 (54)
T ss_dssp CCEECSSSCCEESS
T ss_pred CCeECCCCCcccCC
Confidence 44566666666543
No 182
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.39 E-value=24 Score=19.23 Aligned_cols=13 Identities=23% Similarity=0.506 Sum_probs=8.1
Q ss_pred ccccccCCceeeC
Q 040121 16 RHNCYNYGMVFCH 28 (368)
Q Consensus 16 RHHCR~CG~VfC~ 28 (368)
.+.|..||..|..
T Consensus 2 ~~~C~~C~~~f~~ 14 (29)
T 2m0e_A 2 EHKCPHCDKKFNQ 14 (29)
T ss_dssp CCCCSSCCCCCCT
T ss_pred CCcCCCCCcccCC
Confidence 3557777776654
No 183
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=26.38 E-value=1.1e+02 Score=24.11 Aligned_cols=53 Identities=19% Similarity=0.333 Sum_probs=21.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhCCCC
Q 040121 197 VENHTRKAQLQEVELERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVG 256 (368)
Q Consensus 197 V~~L~~k~~~q~~elq~~~kk~~Ea~~lA~eEsaK~kAAKEvIKSLTaQLKdMAeKLp~g 256 (368)
|..-+++..+.+.+++.-...|+. |=+..++--+.++.=..+|+.|--.+|.+
T Consensus 27 arrSR~krk~r~~e~~~r~~~Le~-------EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 27 VRKSRDKAKMRNLETQHKVLELTA-------ENERLQKKVEQLSRELSTLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHCcHH
Confidence 444455555555444433333322 22233332223333334666776677665
No 184
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=26.35 E-value=34 Score=24.19 Aligned_cols=11 Identities=36% Similarity=0.715 Sum_probs=5.3
Q ss_pred ccccccCCcee
Q 040121 16 RHNCYNYGMVF 26 (368)
Q Consensus 16 RHHCR~CG~Vf 26 (368)
.+.|..||..|
T Consensus 18 ~~~C~~C~~~f 28 (77)
T 2cot_A 18 RYKCDECGKSF 28 (77)
T ss_dssp SSBCSSSCCBC
T ss_pred CEECCCCCccc
Confidence 44455555443
No 185
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=26.33 E-value=16 Score=35.27 Aligned_cols=62 Identities=16% Similarity=0.281 Sum_probs=36.9
Q ss_pred CCCCCCCCCC-ccc--------ccccccccCCce------eeCCCCCcccccccCCCC--------CCCCcccccchHHH
Q 040121 1 MRSGCRLPFN-NFK--------RKRHNCYNYGMV------FCHSSSSKKTLKASMAPN--------PNKPYRICDNCFSK 57 (368)
Q Consensus 1 ~C~~C~~~F~-~f~--------rRRHHCR~CG~V------fC~sCSs~~~~~~~l~p~--------~~kpvRVC~~C~~~ 57 (368)
.|..|+..=. .++ .|..||-.||.- -|..|....-. ..+... ....+-+|+.|...
T Consensus 184 ~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~~~l-~y~~~e~~~~~~~~~~~r~e~C~~C~~Y 262 (309)
T 2fiy_A 184 LCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESKHL-AYLSLEHDGQPAEKAVLRAETCPSCQGY 262 (309)
T ss_dssp SCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCCSCC-EEECCCC-CCCSTTCSEEEEEETTTTEE
T ss_pred CCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCCCCe-eEEEecCccccCCCcceEEEEcccccch
Confidence 4888876332 122 246788888854 68888775322 111111 22334599999999
Q ss_pred hhhccC
Q 040121 58 LRKAFH 63 (368)
Q Consensus 58 L~~~~e 63 (368)
+.....
T Consensus 263 lK~~~~ 268 (309)
T 2fiy_A 263 LKQFYL 268 (309)
T ss_dssp EEEEET
T ss_pred Hhhhhh
Confidence 877644
No 186
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=26.28 E-value=24 Score=19.39 Aligned_cols=14 Identities=14% Similarity=0.002 Sum_probs=9.3
Q ss_pred cccccccCCceeeC
Q 040121 15 KRHNCYNYGMVFCH 28 (368)
Q Consensus 15 RRHHCR~CG~VfC~ 28 (368)
|.+.|..||..|-.
T Consensus 2 k~~~C~~C~k~f~~ 15 (27)
T 2kvh_A 2 KPFSCSLCPQRSRD 15 (27)
T ss_dssp CCEECSSSSCEESS
T ss_pred cCccCCCcChhhCC
Confidence 34678888887643
No 187
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=26.28 E-value=2.5e+02 Score=22.50 Aligned_cols=59 Identities=20% Similarity=0.233 Sum_probs=39.6
Q ss_pred chhhhHHHHHHHHHHHHHHHH-----------HhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 040121 183 VDDAKRTNDRVGQEVENHTRK-----------AQLQEVELERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAE 251 (368)
Q Consensus 183 ~d~lkk~n~~L~qEV~~L~~k-----------~~~q~~elq~~~kk~~Ea~~lA~eEsaK~kAAKEvIKSLTaQLKdMAe 251 (368)
...|++=|+.|++|+..|.-+ ++.-+.+++++.+.++.-+. +|-|-|-.|..+|+-+-|
T Consensus 15 a~~L~~F~d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e----------~a~e~vp~L~~~i~vle~ 84 (94)
T 3fx7_A 15 VGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDE----------AAQEQIAWLKERIRVLEE 84 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHH----------hhHHHhHHHHHHHHHhHH
Confidence 457889999999998888844 44444555555555555433 446677777777776654
No 188
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=26.23 E-value=34 Score=28.35 Aligned_cols=13 Identities=23% Similarity=0.577 Sum_probs=10.2
Q ss_pred CCCcccccchHHH
Q 040121 45 NKPYRICDNCFSK 57 (368)
Q Consensus 45 ~kpvRVC~~C~~~ 57 (368)
.-.++||+.|...
T Consensus 23 ~F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 23 HFDLPTCDDCRDA 35 (111)
T ss_dssp TTSCCCCTTTCSS
T ss_pred hCCeeechhhccc
Confidence 4568899999864
No 189
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=25.90 E-value=1.5e+02 Score=25.33 Aligned_cols=57 Identities=14% Similarity=0.219 Sum_probs=32.2
Q ss_pred HHHHHHHHhHH-HHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHHHhC
Q 040121 197 VENHTRKAQLQ-EVELERTTKQLKEAIAIAG-EETAKCKAAKEVIKSLTAQLKDMAERL 253 (368)
Q Consensus 197 V~~L~~k~~~q-~~elq~~~kk~~Ea~~lA~-eEsaK~kAAKEvIKSLTaQLKdMAeKL 253 (368)
.+.|+++.+.+ ..+..+..+.+++|.+.-. -|-|--.|||+-...+..+|.++-.+|
T Consensus 11 ~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L 69 (158)
T 2p4v_A 11 YEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCM 69 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433 2344444445555443321 144666778998888888777777766
No 190
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=25.84 E-value=37 Score=25.45 Aligned_cols=21 Identities=14% Similarity=0.382 Sum_probs=11.5
Q ss_pred CCCCCCCCCccc-ccccccccCC
Q 040121 2 RSGCRLPFNNFK-RKRHNCYNYG 23 (368)
Q Consensus 2 C~~C~~~F~~f~-rRRHHCR~CG 23 (368)
|..|+..|. +- .-.-.|+.||
T Consensus 24 C~~Cg~~~~-l~~~~~iRC~~CG 45 (63)
T 3h0g_L 24 CADCGARNT-IQAKEVIRCRECG 45 (63)
T ss_dssp CSSSCCBCC-CCSSSCCCCSSSC
T ss_pred CCCCCCeee-cCCCCceECCCCC
Confidence 777877777 32 2234444444
No 191
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=25.75 E-value=3e+02 Score=23.80 Aligned_cols=53 Identities=32% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 040121 197 VENHTRKAQLQEVELERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDM 249 (368)
Q Consensus 197 V~~L~~k~~~q~~elq~~~kk~~Ea~~lA~eEsaK~kAAKEvIKSLTaQLKdM 249 (368)
++....||..++.+|+-....++.--.-...=+.|--.-.+=||.|+.+||+.
T Consensus 37 ae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEA 89 (155)
T 2efr_A 37 AELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEA 89 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
No 192
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=25.74 E-value=84 Score=24.51 Aligned_cols=30 Identities=10% Similarity=0.130 Sum_probs=15.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 040121 184 DDAKRTNDRVGQEVENHTRKAQLQEVELER 213 (368)
Q Consensus 184 d~lkk~n~~L~qEV~~L~~k~~~q~~elq~ 213 (368)
..|...+..|.+|++.|+++.+.+..+|+.
T Consensus 55 ~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 55 LSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555544
No 193
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=25.70 E-value=46 Score=24.25 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=22.8
Q ss_pred CCCCCCCCCCc-cccccccccc--CCceeeCCCCCcc
Q 040121 1 MRSGCRLPFNN-FKRKRHNCYN--YGMVFCHSSSSKK 34 (368)
Q Consensus 1 ~C~~C~~~F~~-f~rRRHHCR~--CG~VfC~sCSs~~ 34 (368)
.|..|+.+.-. -.--...|++ ||..||..|....
T Consensus 8 ~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 8 ECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCS
T ss_pred ECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCc
Confidence 37788775541 0112456888 9999999998664
No 194
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=25.56 E-value=76 Score=24.12 Aligned_cols=22 Identities=9% Similarity=0.025 Sum_probs=8.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q 040121 197 VENHTRKAQLQEVELERTTKQL 218 (368)
Q Consensus 197 V~~L~~k~~~q~~elq~~~kk~ 218 (368)
++.|.++.+.+..+++.+.+++
T Consensus 56 ~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 56 NHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443333334444444333
No 195
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=25.13 E-value=19 Score=24.92 Aligned_cols=7 Identities=29% Similarity=0.904 Sum_probs=3.0
Q ss_pred ccccchH
Q 040121 49 RICDNCF 55 (368)
Q Consensus 49 RVC~~C~ 55 (368)
-||..|-
T Consensus 25 lvC~~CG 31 (50)
T 1pft_A 25 IVCAKCG 31 (50)
T ss_dssp EEESSSC
T ss_pred EECcccC
Confidence 3444443
No 196
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=24.44 E-value=4.1e+02 Score=26.11 Aligned_cols=50 Identities=14% Similarity=0.242 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHHHHHHHHHh-CCCCccc
Q 040121 210 ELERTTKQLKEAIAIAGEET--AKCKAAKEVIKSLTAQLKDMAER-LPVGTLR 259 (368)
Q Consensus 210 elq~~~kk~~Ea~~lA~eEs--aK~kAAKEvIKSLTaQLKdMAeK-Lp~g~~~ 259 (368)
+++.....++++..|+.||. .=..-|++-|+.|..+|.++-.+ ||.|-++
T Consensus 72 ~~~~~~~d~~~~~el~~~e~D~e~~~~a~~e~~~l~~~l~~le~~~ll~~~~D 124 (365)
T 1gqe_A 72 QMKQGLEDVSGLLELAVEADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYD 124 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHGGGGGCCSTTT
T ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 56666677788888887652 22345777888898888887655 5655444
No 197
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=24.29 E-value=26 Score=19.28 Aligned_cols=12 Identities=17% Similarity=0.235 Sum_probs=7.6
Q ss_pred ccccccCCceee
Q 040121 16 RHNCYNYGMVFC 27 (368)
Q Consensus 16 RHHCR~CG~VfC 27 (368)
.+.|..||..|-
T Consensus 2 ~~~C~~C~~~f~ 13 (29)
T 1ard_A 2 SFVCEVCTRAFA 13 (29)
T ss_dssp CCBCTTTCCBCS
T ss_pred CeECCCCCcccC
Confidence 356777777653
No 198
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=24.13 E-value=2.6e+02 Score=28.36 Aligned_cols=13 Identities=15% Similarity=0.141 Sum_probs=6.6
Q ss_pred cchhhhHHHHHHH
Q 040121 182 LVDDAKRTNDRVG 194 (368)
Q Consensus 182 ~~d~lkk~n~~L~ 194 (368)
+.|-|-+..+.+.
T Consensus 87 l~D~L~k~q~~V~ 99 (464)
T 1m1j_B 87 LQTTLLKQEKTVK 99 (464)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhH
Confidence 3555555544443
No 199
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.11 E-value=27 Score=19.21 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=9.8
Q ss_pred cccccccCCceeeC
Q 040121 15 KRHNCYNYGMVFCH 28 (368)
Q Consensus 15 RRHHCR~CG~VfC~ 28 (368)
+.+.|..||..|-.
T Consensus 2 k~~~C~~C~~~f~~ 15 (30)
T 2m0d_A 2 KPYQCDYCGRSFSD 15 (30)
T ss_dssp CCEECTTTCCEESC
T ss_pred cCccCCCCCcccCC
Confidence 34678888887754
No 200
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=23.98 E-value=28 Score=19.16 Aligned_cols=13 Identities=15% Similarity=0.329 Sum_probs=8.9
Q ss_pred ccccccCCceeeC
Q 040121 16 RHNCYNYGMVFCH 28 (368)
Q Consensus 16 RHHCR~CG~VfC~ 28 (368)
.+.|..||..|-.
T Consensus 2 ~~~C~~C~k~f~~ 14 (29)
T 1rik_A 2 KFACPECPKRFMR 14 (29)
T ss_dssp CEECSSSSCEESC
T ss_pred CccCCCCCchhCC
Confidence 4568888887644
No 201
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=23.87 E-value=57 Score=31.16 Aligned_cols=48 Identities=21% Similarity=0.164 Sum_probs=26.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhC
Q 040121 203 KAQLQEVELERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERL 253 (368)
Q Consensus 203 k~~~q~~elq~~~kk~~Ea~~lA~eEsaK~kAAKEvIKSLTaQLKdMAeKL 253 (368)
+.+.++.+++++.+++++--.+ -.++-|+.++-.|.|..-++-..+.|
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~---~e~~~k~n~~rl~~Lqk~~~~~~~~L 233 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQE---RSTANKANAERLKRLQKSADLYKDRL 233 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHTTTTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHhhhhhhHHHHHHHHHHHHHHHHHc
Confidence 6677777777777777765222 12222344444555555554444454
No 202
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.80 E-value=28 Score=19.12 Aligned_cols=14 Identities=21% Similarity=0.377 Sum_probs=9.5
Q ss_pred cccccccCCceeeC
Q 040121 15 KRHNCYNYGMVFCH 28 (368)
Q Consensus 15 RRHHCR~CG~VfC~ 28 (368)
|.+.|..||..|-.
T Consensus 2 k~~~C~~C~k~f~~ 15 (28)
T 2kvf_A 2 RPYSCSVCGKRFSL 15 (28)
T ss_dssp CSEECSSSCCEESC
T ss_pred cCccCCCCCcccCC
Confidence 34678888887654
No 203
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=23.48 E-value=24 Score=33.57 Aligned_cols=25 Identities=12% Similarity=0.041 Sum_probs=0.0
Q ss_pred CCCCCCCCCcccccccccccCCceeeCCC
Q 040121 2 RSGCRLPFNNFKRKRHNCYNYGMVFCHSS 30 (368)
Q Consensus 2 C~~C~~~F~~f~rRRHHCR~CG~VfC~sC 30 (368)
|.+|...|. --.-...||++||..|
T Consensus 184 CPIcl~~f~----DPVts~~CGHsFcR~c 208 (267)
T 3htk_C 184 CPITCKPYE----APLISRKCNHVFDRDG 208 (267)
T ss_dssp CTTTSSBCS----SEEEESSSCCEEEHHH
T ss_pred CcCccCccc----CCeeeCCCCCcccHHH
No 204
>3ub6_A Chemoreceptor TLPB; homodimer, four-helix bundle, PAS domain, membrane protein; 1.38A {Helicobacter pylori} PDB: 3ub7_A 3ub8_A 3ub9_A*
Probab=23.30 E-value=2.2e+02 Score=24.43 Aligned_cols=26 Identities=19% Similarity=0.115 Sum_probs=13.7
Q ss_pred ceEEEE-EeCCCCccceeEEEE--ecChh
Q 040121 334 GGYIAL-TSLPGGLNYLKRVRF--RFMET 359 (368)
Q Consensus 334 gv~it~-~~~~~g~~~lkrvrf--~f~e~ 359 (368)
|-|+.+ ...|+++.....+-| .|..|
T Consensus 118 ~G~v~Y~w~~p~~~~~~~Klsyv~~~~~w 146 (181)
T 3ub6_A 118 GGYTYYKMPKYDGGVPEKKFAYSHYDEVS 146 (181)
T ss_dssp SEEEEEEECSSTTSCCEEEEEEEEEETTT
T ss_pred CcEEEEEeccCCCCCccceEEEEEEECCC
Confidence 455555 344555555555555 55543
No 205
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=23.29 E-value=1.3e+02 Score=30.61 Aligned_cols=12 Identities=8% Similarity=0.307 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhC
Q 040121 242 LTAQLKDMAERL 253 (368)
Q Consensus 242 LTaQLKdMAeKL 253 (368)
++.+|..|...|
T Consensus 166 ~~~~i~~L~~~~ 177 (464)
T 1m1j_B 166 IPSSLRVLRAVI 177 (464)
T ss_dssp HHHHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 445666766666
No 206
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=22.49 E-value=1.7e+02 Score=22.81 Aligned_cols=31 Identities=10% Similarity=0.179 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 040121 190 NDRVGQEVENHTRKAQLQEVELERTTKQLKE 220 (368)
Q Consensus 190 n~~L~qEV~~L~~k~~~q~~elq~~~kk~~E 220 (368)
.+-|.+||..|+=+-|.+.-+|+..+++-++
T Consensus 29 l~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd 59 (83)
T 2xdj_A 29 LSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3344455556665555555555555555444
No 207
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=22.42 E-value=3e+02 Score=27.34 Aligned_cols=10 Identities=20% Similarity=0.454 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 040121 211 LERTTKQLKE 220 (368)
Q Consensus 211 lq~~~kk~~E 220 (368)
.|++++-++|
T Consensus 83 tq~skkml~~ 92 (409)
T 1m1j_C 83 TQKSKKIIEE 92 (409)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344333333
No 208
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=22.32 E-value=44 Score=26.71 Aligned_cols=30 Identities=17% Similarity=0.319 Sum_probs=16.3
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCc
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSK 33 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~ 33 (368)
.|.+|.. |+ ..-..-||-||+||=..|...
T Consensus 17 ~C~VC~~-~t--~~~l~pCRvC~RvfH~~CL~r 46 (89)
T 1wil_A 17 MCDVCEV-WT--AESLFPCRVCTRVFHDGCLRR 46 (89)
T ss_dssp CCTTTCC-CC--SSCCSSCSSSSSCCCHHHHHH
T ss_pred ccCcccc-cc--ccceeccccccccccHhhccc
Confidence 3666654 32 112356777777765556543
No 209
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=22.31 E-value=1.4e+02 Score=29.38 Aligned_cols=44 Identities=9% Similarity=0.125 Sum_probs=31.3
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 040121 183 VDDAKRTNDRVGQEVENHTRKAQLQEVELERTTKQLKEAIAIAG 226 (368)
Q Consensus 183 ~d~lkk~n~~L~qEV~~L~~k~~~q~~elq~~~kk~~Ea~~lA~ 226 (368)
++.++...+.|.+|++.|.++.+..+.+++++++++.+.-.+-+
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr 48 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRR 48 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777777777777777766655443
No 210
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=22.27 E-value=35 Score=25.97 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=14.3
Q ss_pred CCCCCCCCCcccccccccccC-CceeeCCCC
Q 040121 2 RSGCRLPFNNFKRKRHNCYNY-GMVFCHSSS 31 (368)
Q Consensus 2 C~~C~~~F~~f~rRRHHCR~C-G~VfC~sCS 31 (368)
|.+|...=+ ..|.-| |.+||..|-
T Consensus 11 C~ICneDAt------lrC~gCdgDLYC~rC~ 35 (67)
T 2d8v_A 11 CCICNEDAT------LRCAGCDGDLYCARCF 35 (67)
T ss_dssp CTTTCSCCC------EEETTTTSEEECSSHH
T ss_pred eEEeCCCCe------EEecCCCCceehHHHH
Confidence 666666422 346777 666666654
No 211
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=22.25 E-value=92 Score=30.17 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=26.0
Q ss_pred HHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 040121 189 TNDRVGQE--VENHTRKAQLQEVELERTTKQLKEAIA 223 (368)
Q Consensus 189 ~n~~L~qE--V~~L~~k~~~q~~elq~~~kk~~Ea~~ 223 (368)
.+.++++| |+.|+.+.+.++.+|++++++|.+-..
T Consensus 18 e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 18 EQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555 888888888888899988888766543
No 212
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=22.23 E-value=1.1e+02 Score=20.53 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 040121 194 GQEVENHTRKAQLQEVELERTTKQLKEAI 222 (368)
Q Consensus 194 ~qEV~~L~~k~~~q~~elq~~~kk~~Ea~ 222 (368)
.||-+.|....++.+.||-++++.-+|-.
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 46777888888888888888877665543
No 213
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.22 E-value=31 Score=18.81 Aligned_cols=13 Identities=23% Similarity=0.462 Sum_probs=8.3
Q ss_pred ccccccCCceeeC
Q 040121 16 RHNCYNYGMVFCH 28 (368)
Q Consensus 16 RHHCR~CG~VfC~ 28 (368)
.+.|..||..|-.
T Consensus 2 ~~~C~~C~k~f~~ 14 (29)
T 2m0f_A 2 PLKCRECGKQFTT 14 (29)
T ss_dssp CEECTTTSCEESC
T ss_pred CccCCCCCCccCC
Confidence 3567777776643
No 214
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=21.99 E-value=1.4e+02 Score=25.49 Aligned_cols=31 Identities=10% Similarity=0.097 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 040121 193 VGQEVENHTRKAQLQEVELERTTKQLKEAIA 223 (368)
Q Consensus 193 L~qEV~~L~~k~~~q~~elq~~~kk~~Ea~~ 223 (368)
+.++|+.++...+.....++++.+.-+...+
T Consensus 41 F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~ 71 (180)
T 1s94_A 41 FFEQVEEIRAMIDKISDNVDAVKKKHSDILS 71 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777777666666555444333
No 215
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=21.96 E-value=39 Score=23.86 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=6.3
Q ss_pred ccccccCCceee
Q 040121 16 RHNCYNYGMVFC 27 (368)
Q Consensus 16 RHHCR~CG~VfC 27 (368)
.+.|..||..|-
T Consensus 15 ~~~C~~C~k~f~ 26 (77)
T 2ct1_A 15 PYECYICHARFT 26 (77)
T ss_dssp SEECTTTCCEES
T ss_pred CeECCCcCchhC
Confidence 345555555543
No 216
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=21.86 E-value=93 Score=33.83 Aligned_cols=56 Identities=14% Similarity=0.178 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 040121 194 GQEVENHTRKAQLQEVELERTTKQLKEA-------IAIAGEETAKCKAAKEVIKSLTAQLKDM 249 (368)
Q Consensus 194 ~qEV~~L~~k~~~q~~elq~~~kk~~Ea-------~~lA~eEsaK~kAAKEvIKSLTaQLKdM 249 (368)
..|.+.|..+.+..+.+|+++++|+... -.+..+|-+|...+++-|+.|.++|+.|
T Consensus 799 ~~~~~rl~k~~~~~~~~~~~~~~~l~~~~f~~~ap~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (862)
T 1gax_A 799 EEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREALSQI 861 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556777888888888888888877652 1345667788888888888888888754
No 217
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=21.82 E-value=3.4e+02 Score=22.86 Aligned_cols=9 Identities=22% Similarity=0.549 Sum_probs=5.7
Q ss_pred HHHHHHHHH
Q 040121 238 VIKSLTAQL 246 (368)
Q Consensus 238 vIKSLTaQL 246 (368)
+||-||.++
T Consensus 49 IIkDisdkI 57 (129)
T 3f6n_A 49 IVNDLTKLI 57 (129)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666654
No 218
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=21.79 E-value=30 Score=27.02 Aligned_cols=10 Identities=30% Similarity=0.258 Sum_probs=4.7
Q ss_pred cccccCCcee
Q 040121 17 HNCYNYGMVF 26 (368)
Q Consensus 17 HHCR~CG~Vf 26 (368)
+.|..||..|
T Consensus 75 ~~C~~C~k~f 84 (129)
T 2wbt_A 75 FVCPLCLMPF 84 (129)
T ss_dssp EECTTTCCEE
T ss_pred eECCCCCccc
Confidence 3444444444
No 219
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=21.75 E-value=2.1e+02 Score=21.89 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhCC
Q 040121 192 RVGQEVENHTRKAQLQEVELERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLP 254 (368)
Q Consensus 192 ~L~qEV~~L~~k~~~q~~elq~~~kk~~Ea~~lA~eEsaK~kAAKEvIKSLTaQLKdMAeKLp 254 (368)
.|.+-+..|..|.-.||.-|+.+.+.+-+-+ ..|--|+.||+.|++||.
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq--------------~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADAR--------------LTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence 3444477888888888877777766554432 257778888888888884
No 220
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=21.63 E-value=28 Score=27.42 Aligned_cols=9 Identities=33% Similarity=0.497 Sum_probs=6.5
Q ss_pred cccccCCcee
Q 040121 17 HNCYNYGMVF 26 (368)
Q Consensus 17 HHCR~CG~Vf 26 (368)
+.|| ||..|
T Consensus 24 ypCr-CGd~F 32 (83)
T 1yop_A 24 YPCP-CGDRF 32 (83)
T ss_dssp EEET-TTEEE
T ss_pred EeCC-CCCeE
Confidence 6787 88765
No 221
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=21.50 E-value=31 Score=27.79 Aligned_cols=35 Identities=11% Similarity=-0.116 Sum_probs=22.5
Q ss_pred CCCCCCCCCCcccc----------ccc----ccccCCceeeCCCCCcccc
Q 040121 1 MRSGCRLPFNNFKR----------KRH----NCYNYGMVFCHSSSSKKTL 36 (368)
Q Consensus 1 ~C~~C~~~F~~f~r----------RRH----HCR~CG~VfC~sCSs~~~~ 36 (368)
.|.+|...|. -.- .-. .--.||.+|+..|...+..
T Consensus 39 ~CaIC~~~~~-~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~ 87 (106)
T 3dpl_R 39 NCAICRNHIM-DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK 87 (106)
T ss_dssp CCSSSCSCTT-SCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT
T ss_pred CCccCChhHh-CcCchhhccccccCCccceEeecccCcEECHHHHHHHHH
Confidence 4889988887 210 000 1146999999999877653
No 222
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=21.41 E-value=2e+02 Score=36.23 Aligned_cols=18 Identities=11% Similarity=0.222 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHhC
Q 040121 236 KEVIKSLTAQLKDMAERL 253 (368)
Q Consensus 236 KEvIKSLTaQLKdMAeKL 253 (368)
++-.+.+.++|+++-++|
T Consensus 2027 ~~~L~~~~~~L~~le~~l 2044 (3245)
T 3vkg_A 2027 KLKQDEIVATITALEKSI 2044 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444555555555
No 223
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=26.70 E-value=20 Score=19.55 Aligned_cols=13 Identities=23% Similarity=0.378 Sum_probs=8.2
Q ss_pred ccccccCCceeeC
Q 040121 16 RHNCYNYGMVFCH 28 (368)
Q Consensus 16 RHHCR~CG~VfC~ 28 (368)
.+.|..||..|-.
T Consensus 2 p~~C~~C~k~f~~ 14 (26)
T 2lvu_A 2 PYVCERCGKRFVQ 14 (26)
Confidence 3567777776544
No 224
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=21.16 E-value=41 Score=24.52 Aligned_cols=10 Identities=20% Similarity=0.218 Sum_probs=7.7
Q ss_pred CCCCCCCCCC
Q 040121 1 MRSGCRLPFN 10 (368)
Q Consensus 1 ~C~~C~~~F~ 10 (368)
.|..|.+.|.
T Consensus 10 ~C~~C~~~f~ 19 (96)
T 2dmd_A 10 KCEVCGKCFS 19 (96)
T ss_dssp CBTTTTBCCC
T ss_pred ECCCCCCccC
Confidence 4788888886
No 225
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.13 E-value=50 Score=25.07 Aligned_cols=6 Identities=33% Similarity=0.628 Sum_probs=3.6
Q ss_pred cccchH
Q 040121 50 ICDNCF 55 (368)
Q Consensus 50 VC~~C~ 55 (368)
.|..|-
T Consensus 82 ~C~~C~ 87 (115)
T 2dmi_A 82 KCMYCG 87 (115)
T ss_dssp BCSSSC
T ss_pred ECCCCC
Confidence 566664
No 226
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=21.01 E-value=27 Score=29.57 Aligned_cols=30 Identities=17% Similarity=0.296 Sum_probs=21.7
Q ss_pred CCCCCCCCCCcccccccccccCCceeeCCCCCccc
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKT 35 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~ 35 (368)
.|.+|...|. .-..+ .||.+||..|...+.
T Consensus 20 ~C~IC~~~~~----~pv~~-~CgH~fC~~Ci~~~~ 49 (170)
T 3hcs_A 20 ECPICLMALR----EAVQT-PCGHRFCKACIIKSI 49 (170)
T ss_dssp BCTTTCSBCS----SEEEC-TTSCEEEHHHHHHHH
T ss_pred CCCCCChhhc----CcEEC-CCCCHHHHHHHHHHH
Confidence 3888887665 22334 799999999987754
No 227
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=20.98 E-value=33 Score=18.82 Aligned_cols=13 Identities=8% Similarity=0.082 Sum_probs=8.2
Q ss_pred ccccccCCceeeC
Q 040121 16 RHNCYNYGMVFCH 28 (368)
Q Consensus 16 RHHCR~CG~VfC~ 28 (368)
.+.|..||..|-.
T Consensus 2 ~~~C~~C~k~f~~ 14 (30)
T 1klr_A 2 TYQCQYCEFRSAD 14 (30)
T ss_dssp CCCCSSSSCCCSC
T ss_pred CccCCCCCCccCC
Confidence 3567777776543
No 228
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=20.83 E-value=2.7e+02 Score=21.26 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=19.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 040121 184 DDAKRTNDRVGQEVENHTRKAQLQEVELERTTKQLKEA 221 (368)
Q Consensus 184 d~lkk~n~~L~qEV~~L~~k~~~q~~elq~~~kk~~Ea 221 (368)
|-++.+|.+|.+-.+.|..=-+.|-.|-+-+..|.+||
T Consensus 22 eAlkqsNq~mkeR~eeL~~wqekQkeErefl~~kf~EA 59 (70)
T 3brv_B 22 DAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEA 59 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44555565555555555433334445555555555554
No 229
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=20.83 E-value=26 Score=25.81 Aligned_cols=28 Identities=11% Similarity=0.067 Sum_probs=19.4
Q ss_pred CCCCCCCCCCcccccccccccCCce-eeCCCCCc
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMV-FCHSSSSK 33 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~V-fC~sCSs~ 33 (368)
.|.+|...|.. .---.||+. ||..|...
T Consensus 26 ~C~iC~~~~~~-----~~~~pCgH~~~C~~C~~~ 54 (74)
T 4ic3_A 26 LCKICMDRNIA-----IVFVPCGHLVTCKQCAEA 54 (74)
T ss_dssp BCTTTSSSBCC-----EEEETTCCBCCCHHHHTT
T ss_pred CCCCCCCCCCC-----EEEcCCCChhHHHHhhhc
Confidence 37888776541 222479999 99999754
No 230
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=20.82 E-value=29 Score=30.84 Aligned_cols=29 Identities=3% Similarity=-0.099 Sum_probs=19.5
Q ss_pred CCCCCCCCCcccccccccccCCceeeCCCCCccc
Q 040121 2 RSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKT 35 (368)
Q Consensus 2 C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~ 35 (368)
|.+|...|. --.+-.||.+||..|...+.
T Consensus 109 CPI~~elm~-----DPV~~~~Ghtfer~~I~~~l 137 (179)
T 2f42_A 109 GKISFELMR-----EPCITPSGITYDRKDIEEHL 137 (179)
T ss_dssp CTTTCSBCS-----SEEECTTSCEEEHHHHHHHH
T ss_pred ccCccccCC-----CCeECCCCCEECHHHHHHHH
Confidence 777766554 24445788888888876544
No 231
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=20.79 E-value=21 Score=29.57 Aligned_cols=27 Identities=11% Similarity=0.047 Sum_probs=0.0
Q ss_pred cCCceeeCCCCCcccccccCCCCCCCCcccccchHHH
Q 040121 21 NYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSK 57 (368)
Q Consensus 21 ~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~ 57 (368)
.||.+|+..|...+... ..+|-.|-..
T Consensus 83 ~C~H~FH~~CI~~Wl~~----------~~~CP~Cr~~ 109 (117)
T 4a0k_B 83 VCNHAFHFHCISRWLKT----------RQVCPLDNRE 109 (117)
T ss_dssp -------------------------------------
T ss_pred CcCceEcHHHHHHHHHc----------CCcCCCCCCe
Confidence 69999999998776532 2467777554
No 232
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.78 E-value=34 Score=25.11 Aligned_cols=27 Identities=11% Similarity=0.074 Sum_probs=19.1
Q ss_pred CCCCCCCCCCcccccccccccCCce-eeCCCCC
Q 040121 1 MRSGCRLPFNNFKRKRHNCYNYGMV-FCHSSSS 32 (368)
Q Consensus 1 ~C~~C~~~F~~f~rRRHHCR~CG~V-fC~sCSs 32 (368)
.|.+|...|.. .---.||.+ ||..|..
T Consensus 27 ~C~IC~~~~~~-----~~~~pCgH~~~C~~C~~ 54 (75)
T 2ecg_A 27 LCKICMDRNIA-----IVFVPCGHLVTCKQCAE 54 (75)
T ss_dssp SCSSSCSSCCC-----BCCSSSCCCCBCHHHHH
T ss_pred CCCcCCCCCCC-----EEEecCCCHHHHHHHhh
Confidence 48888776652 222579999 9999973
No 233
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=20.76 E-value=71 Score=21.11 Aligned_cols=18 Identities=17% Similarity=0.152 Sum_probs=9.0
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 040121 184 DDAKRTNDRVGQEVENHT 201 (368)
Q Consensus 184 d~lkk~n~~L~qEV~~L~ 201 (368)
++|-..|..|.+||..|+
T Consensus 10 EeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 10 EELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHH
Confidence 444455555555555544
No 234
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.59 E-value=1.6e+02 Score=29.23 Aligned_cols=40 Identities=23% Similarity=0.139 Sum_probs=29.3
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 040121 183 VDDAKRTNDRVGQEVENHTRKAQLQEVELERTTKQLKEAI 222 (368)
Q Consensus 183 ~d~lkk~n~~L~qEV~~L~~k~~~q~~elq~~~kk~~Ea~ 222 (368)
.+.|....+.|.++++.|.++.+.+..+++..+.++.+.-
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 44 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSN 44 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777777777777777777777777777766644
No 235
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=20.55 E-value=1.2e+02 Score=26.85 Aligned_cols=36 Identities=11% Similarity=0.130 Sum_probs=20.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 040121 183 VDDAKRTNDRVGQEVENHTRKAQLQEVELERTTKQL 218 (368)
Q Consensus 183 ~d~lkk~n~~L~qEV~~L~~k~~~q~~elq~~~kk~ 218 (368)
...|+++++.|+.++..|+...+..+.+.+.+.+++
T Consensus 44 q~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i 79 (174)
T 2p22_A 44 QESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQI 79 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777776555555555555544444443
No 236
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=20.47 E-value=40 Score=25.70 Aligned_cols=29 Identities=17% Similarity=0.509 Sum_probs=19.7
Q ss_pred CCCCCCc-ccccccccc-----cCCceeeCCCCCc
Q 040121 5 CRLPFNN-FKRKRHNCY-----NYGMVFCHSSSSK 33 (368)
Q Consensus 5 C~~~F~~-f~rRRHHCR-----~CG~VfC~sCSs~ 33 (368)
|+..... --.++-.|. .||..||..|...
T Consensus 33 C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~ 67 (80)
T 2jmo_A 33 CGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEA 67 (80)
T ss_dssp CCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEE
T ss_pred CCcccEECCCCCcCCCCCCCCCCCCCeeccccCcc
Confidence 6554430 123457897 8999999999754
No 237
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=20.46 E-value=34 Score=18.97 Aligned_cols=13 Identities=15% Similarity=0.176 Sum_probs=8.4
Q ss_pred ccccccCCceeeC
Q 040121 16 RHNCYNYGMVFCH 28 (368)
Q Consensus 16 RHHCR~CG~VfC~ 28 (368)
.+.|..||..|-.
T Consensus 2 ~~~C~~C~k~f~~ 14 (30)
T 1paa_A 2 AYACGLCNRAFTR 14 (30)
T ss_dssp CSBCTTTCCBCSS
T ss_pred CcCCcccCcccCC
Confidence 3567778776643
No 238
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=20.42 E-value=39 Score=27.52 Aligned_cols=11 Identities=27% Similarity=0.606 Sum_probs=8.1
Q ss_pred ccccccCCcee
Q 040121 16 RHNCYNYGMVF 26 (368)
Q Consensus 16 RHHCR~CG~Vf 26 (368)
+..|++||..|
T Consensus 73 ~~~C~~CG~~~ 83 (119)
T 2kdx_A 73 ELECKDCSHVF 83 (119)
T ss_dssp EEECSSSSCEE
T ss_pred eEEcCCCCCEE
Confidence 57788888764
No 239
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=20.28 E-value=53 Score=25.28 Aligned_cols=6 Identities=33% Similarity=0.180 Sum_probs=2.7
Q ss_pred CCCCCC
Q 040121 2 RSGCRL 7 (368)
Q Consensus 2 C~~C~~ 7 (368)
|..|++
T Consensus 29 C~fCgk 34 (72)
T 3jyw_9 29 CSFCGK 34 (72)
T ss_dssp CSSCCS
T ss_pred CCCCCC
Confidence 444443
No 240
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=20.26 E-value=3.2e+02 Score=21.74 Aligned_cols=61 Identities=11% Similarity=0.096 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 040121 186 AKRTNDRVGQEVEN---HTRKAQLQEVELERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAER 252 (368)
Q Consensus 186 lkk~n~~L~qEV~~---L~~k~~~q~~elq~~~kk~~Ea~~lA~eEsaK~kAAKEvIKSLTaQLKdMAeK 252 (368)
+.|...+|.+|+.- ++.+.+....||.-.+.=|++| |+-. ...--+.+|.-..||+|+|--
T Consensus 7 l~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da-----~~~~-~~~~d~~vk~W~~~vrdlaYD 70 (115)
T 3qfl_A 7 IPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKI-----GEVP-REQLDSQDKLWADEVRELSYV 70 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTSC-GGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH-----HHhc-cccCCHHHHHHHHHHHHHHHH
Confidence 56777788888433 3333344444444433333332 2210 012345677777788877643
No 241
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.14 E-value=30 Score=19.18 Aligned_cols=13 Identities=8% Similarity=-0.182 Sum_probs=8.8
Q ss_pred cccccccCCceee
Q 040121 15 KRHNCYNYGMVFC 27 (368)
Q Consensus 15 RRHHCR~CG~VfC 27 (368)
|.+.|..||..|-
T Consensus 2 k~~~C~~C~k~f~ 14 (27)
T 2kvg_A 2 APYRCPLCRAGCP 14 (27)
T ss_dssp CTEEETTTTEEES
T ss_pred cCcCCCCCCcccC
Confidence 3466888887764
No 242
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=20.14 E-value=1.8e+02 Score=22.37 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=6.6
Q ss_pred HHHHHHHHhHHHHHHH
Q 040121 197 VENHTRKAQLQEVELE 212 (368)
Q Consensus 197 V~~L~~k~~~q~~elq 212 (368)
|..-+++..+.+.+++
T Consensus 27 akrSR~krk~r~~e~~ 42 (78)
T 1gu4_A 27 VRKSRDKAKMRNLETQ 42 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
Done!