Query 040122
Match_columns 388
No_of_seqs 156 out of 1748
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 05:20:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040122.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040122hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.9 8.1E-23 1.8E-27 216.4 19.0 289 25-377 591-910 (1153)
2 PLN03210 Resistant to P. syrin 99.9 1.6E-21 3.4E-26 206.7 20.2 303 23-374 611-944 (1153)
3 PLN00113 leucine-rich repeat r 99.9 4.3E-21 9.4E-26 202.3 14.6 275 77-387 139-431 (968)
4 PLN00113 leucine-rich repeat r 99.8 2E-20 4.4E-25 197.2 15.7 142 9-175 90-246 (968)
5 KOG0444 Cytoskeletal regulator 99.7 1.8E-18 3.9E-23 161.7 -5.0 280 42-374 95-376 (1255)
6 KOG0444 Cytoskeletal regulator 99.6 1.7E-18 3.6E-23 161.9 -6.8 320 23-387 29-365 (1255)
7 KOG4194 Membrane glycoprotein 99.6 1.5E-16 3.3E-21 147.8 5.7 304 45-383 97-439 (873)
8 KOG4194 Membrane glycoprotein 99.6 7.5E-17 1.6E-21 149.8 2.7 152 198-367 289-446 (873)
9 KOG4341 F-box protein containi 99.5 3.4E-16 7.3E-21 140.2 -8.1 296 50-376 138-442 (483)
10 PRK15387 E3 ubiquitin-protein 99.4 3E-12 6.5E-17 128.0 13.4 280 23-373 171-458 (788)
11 KOG4341 F-box protein containi 99.4 4.5E-15 9.7E-20 133.1 -6.6 268 78-375 138-416 (483)
12 PRK15387 E3 ubiquitin-protein 99.3 6E-12 1.3E-16 125.9 10.8 239 39-345 213-456 (788)
13 KOG0472 Leucine-rich repeat pr 99.3 2.7E-14 5.9E-19 127.5 -5.7 60 198-263 248-308 (565)
14 KOG4658 Apoptotic ATPase [Sign 99.2 5.7E-12 1.2E-16 128.5 3.7 125 249-378 714-847 (889)
15 KOG0472 Leucine-rich repeat pr 99.2 1.6E-13 3.5E-18 122.6 -9.2 253 80-387 47-300 (565)
16 PRK15370 E3 ubiquitin-protein 99.2 1.7E-10 3.7E-15 116.1 10.6 249 47-371 175-426 (754)
17 KOG0618 Serine/threonine phosp 99.1 6.7E-13 1.4E-17 129.9 -8.2 168 202-387 241-433 (1081)
18 KOG0618 Serine/threonine phosp 99.1 5.2E-12 1.1E-16 123.8 -2.2 255 50-346 219-488 (1081)
19 PRK15370 E3 ubiquitin-protein 99.0 7E-10 1.5E-14 111.7 7.9 236 39-345 190-426 (754)
20 KOG0617 Ras suppressor protein 99.0 2.6E-11 5.6E-16 96.6 -3.7 159 77-271 32-191 (264)
21 KOG4658 Apoptotic ATPase [Sign 98.9 2.2E-09 4.8E-14 109.8 6.7 151 216-379 709-866 (889)
22 cd00116 LRR_RI Leucine-rich re 98.9 2.5E-10 5.4E-15 105.3 -1.2 116 50-175 23-147 (319)
23 cd00116 LRR_RI Leucine-rich re 98.9 4.9E-10 1.1E-14 103.4 0.5 245 76-345 21-289 (319)
24 KOG0617 Ras suppressor protein 98.8 8.6E-11 1.9E-15 93.6 -4.1 161 47-243 30-191 (264)
25 KOG3207 Beta-tubulin folding c 98.8 8.9E-10 1.9E-14 100.0 -0.2 211 75-312 118-336 (505)
26 KOG2120 SCF ubiquitin ligase, 98.5 1.3E-09 2.8E-14 94.4 -6.6 164 198-372 206-375 (419)
27 KOG2120 SCF ubiquitin ligase, 98.4 3.2E-09 7E-14 92.0 -6.7 161 134-313 206-374 (419)
28 KOG3207 Beta-tubulin folding c 98.4 3.7E-08 8E-13 89.7 -0.5 186 101-313 118-312 (505)
29 KOG4237 Extracellular matrix p 98.3 1.7E-08 3.6E-13 90.8 -4.4 256 77-371 66-357 (498)
30 KOG1947 Leucine rich repeat pr 98.3 2.7E-08 6E-13 97.0 -4.2 12 304-315 403-414 (482)
31 PF14580 LRR_9: Leucine-rich r 98.3 2.3E-07 5E-12 76.6 1.4 107 49-176 18-124 (175)
32 PF14580 LRR_9: Leucine-rich r 98.2 1.3E-06 2.8E-11 72.2 3.8 129 25-175 21-150 (175)
33 KOG4237 Extracellular matrix p 98.2 8.1E-08 1.8E-12 86.5 -3.5 78 37-122 56-133 (498)
34 PRK15386 type III secretion pr 98.2 1.8E-05 3.9E-10 73.6 10.6 60 77-154 51-110 (426)
35 KOG1947 Leucine rich repeat pr 98.1 2E-07 4.3E-12 91.0 -3.7 244 49-318 187-443 (482)
36 PRK15386 type III secretion pr 98.0 2.9E-05 6.3E-10 72.2 8.8 115 224-373 94-213 (426)
37 PF13855 LRR_8: Leucine rich r 97.9 1.9E-05 4.2E-10 53.2 4.8 58 79-148 2-59 (61)
38 PF13855 LRR_8: Leucine rich r 97.9 2.9E-05 6.3E-10 52.4 5.1 59 50-114 1-59 (61)
39 KOG1909 Ran GTPase-activating 97.8 1.9E-06 4.2E-11 76.6 -2.8 259 38-344 18-308 (382)
40 KOG1909 Ran GTPase-activating 97.7 5.3E-06 1.1E-10 73.9 -1.3 200 22-234 29-251 (382)
41 COG4886 Leucine-rich repeat (L 97.6 7.7E-05 1.7E-09 71.0 5.1 177 100-315 112-290 (394)
42 COG4886 Leucine-rich repeat (L 97.5 8.2E-05 1.8E-09 70.8 3.7 172 76-286 114-287 (394)
43 KOG3665 ZYG-1-like serine/thre 97.4 3.4E-05 7.5E-10 77.5 0.4 37 136-174 120-157 (699)
44 KOG1259 Nischarin, modulator o 97.4 3.7E-05 8.1E-10 67.3 0.0 125 50-211 284-408 (490)
45 KOG3665 ZYG-1-like serine/thre 97.3 5.8E-05 1.2E-09 76.0 0.7 36 50-87 122-157 (699)
46 KOG1259 Nischarin, modulator o 97.3 7.8E-05 1.7E-09 65.4 0.5 40 75-115 179-225 (490)
47 KOG0532 Leucine-rich repeat (L 97.2 8.4E-06 1.8E-10 77.1 -6.0 158 38-234 86-244 (722)
48 KOG2982 Uncharacterized conser 97.2 9.8E-05 2.1E-09 64.7 0.2 142 222-371 69-210 (418)
49 PF12799 LRR_4: Leucine Rich r 97.1 0.00088 1.9E-08 41.6 4.1 39 78-120 1-39 (44)
50 PLN03150 hypothetical protein; 97.1 0.0013 2.8E-08 66.3 7.0 83 79-176 419-501 (623)
51 PLN03150 hypothetical protein; 96.8 0.0022 4.7E-08 64.6 6.2 113 254-377 420-532 (623)
52 KOG2982 Uncharacterized conser 96.7 0.00096 2.1E-08 58.7 2.5 69 249-318 196-265 (418)
53 KOG0532 Leucine-rich repeat (L 96.7 7.8E-05 1.7E-09 70.8 -4.7 172 75-286 95-270 (722)
54 KOG1644 U2-associated snRNP A' 96.5 0.005 1.1E-07 51.3 5.3 107 78-211 42-149 (233)
55 KOG1644 U2-associated snRNP A' 96.3 0.0087 1.9E-07 49.9 5.2 87 77-174 63-149 (233)
56 PF12799 LRR_4: Leucine Rich r 96.2 0.0078 1.7E-07 37.3 3.6 40 50-95 1-40 (44)
57 KOG2739 Leucine-rich acidic nu 96.1 0.0022 4.9E-08 55.4 0.9 13 163-175 114-126 (260)
58 KOG2123 Uncharacterized conser 95.6 0.00041 8.9E-09 60.3 -5.5 107 223-341 18-124 (388)
59 KOG1859 Leucine-rich repeat pr 95.5 0.00096 2.1E-08 65.5 -3.9 110 197-314 182-291 (1096)
60 KOG3864 Uncharacterized conser 95.4 0.0017 3.6E-08 54.0 -2.3 46 272-317 121-166 (221)
61 KOG0531 Protein phosphatase 1, 95.4 0.0048 1E-07 59.1 0.4 59 46-113 91-149 (414)
62 KOG0531 Protein phosphatase 1, 95.4 0.0036 7.9E-08 59.9 -0.5 86 75-181 92-177 (414)
63 KOG2123 Uncharacterized conser 94.8 0.0014 3.1E-08 57.1 -4.5 82 49-149 18-99 (388)
64 PF00560 LRR_1: Leucine Rich R 94.7 0.024 5.2E-07 29.2 1.7 21 361-382 1-21 (22)
65 KOG2739 Leucine-rich acidic nu 94.6 0.017 3.6E-07 50.1 1.6 110 49-177 42-155 (260)
66 KOG1859 Leucine-rich repeat pr 94.6 0.0011 2.5E-08 65.0 -6.2 90 37-147 174-263 (1096)
67 PF13306 LRR_5: Leucine rich r 94.4 0.26 5.7E-06 38.3 8.0 13 100-112 8-20 (129)
68 KOG3864 Uncharacterized conser 94.3 0.0044 9.6E-08 51.5 -2.4 49 135-184 122-170 (221)
69 PF13504 LRR_7: Leucine rich r 93.7 0.047 1E-06 26.1 1.5 17 360-377 1-17 (17)
70 COG5238 RNA1 Ran GTPase-activa 93.6 0.029 6.3E-07 49.0 1.1 203 22-234 29-252 (388)
71 PF13306 LRR_5: Leucine rich r 92.2 1.4 2.9E-05 34.1 8.8 11 163-173 33-43 (129)
72 KOG4579 Leucine-rich repeat (L 91.2 0.015 3.3E-07 45.5 -3.3 107 50-175 27-133 (177)
73 smart00367 LRR_CC Leucine-rich 90.0 0.18 3.8E-06 27.1 1.1 17 359-375 1-17 (26)
74 COG5238 RNA1 Ran GTPase-activa 80.6 0.44 9.6E-06 41.9 -0.4 114 198-313 88-225 (388)
75 smart00369 LRR_TYP Leucine-ric 72.6 2.2 4.7E-05 22.6 1.1 21 360-381 2-22 (26)
76 smart00370 LRR Leucine-rich re 72.6 2.2 4.7E-05 22.6 1.1 21 360-381 2-22 (26)
77 KOG4579 Leucine-rich repeat (L 59.6 1 2.2E-05 35.6 -2.6 61 49-116 52-112 (177)
78 PF13516 LRR_6: Leucine Rich r 57.4 7.7 0.00017 20.0 1.4 12 104-115 2-13 (24)
79 smart00364 LRR_BAC Leucine-ric 33.1 26 0.00056 18.8 1.0 18 360-378 2-19 (26)
80 smart00365 LRR_SD22 Leucine-ri 29.1 55 0.0012 17.5 1.8 10 104-113 2-11 (26)
81 KOG3763 mRNA export factor TAP 26.3 32 0.0007 33.8 1.1 87 75-171 215-307 (585)
82 KOG3763 mRNA export factor TAP 25.5 19 0.0004 35.3 -0.6 11 223-233 217-227 (585)
83 smart00368 LRR_RI Leucine rich 25.5 46 0.00099 17.9 1.2 11 104-114 2-12 (28)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=8.1e-23 Score=216.44 Aligned_cols=289 Identities=23% Similarity=0.315 Sum_probs=188.7
Q ss_pred cceeeecCCCCchhHHHHhhhccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCC
Q 040122 25 GELHHWEGNNLNSTIQKCYDEKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLN 104 (388)
Q Consensus 25 ~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 104 (388)
+..+.|.+ ..++.+|..+ .+.+|++|++.++. +...|.+. ..+++|+.|++++|..+..++. +..++
T Consensus 591 Lr~L~~~~----~~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~----~~l~~Lk~L~Ls~~~~l~~ip~---ls~l~ 657 (1153)
T PLN03210 591 LRLLRWDK----YPLRCMPSNF-RPENLVKLQMQGSK-LEKLWDGV----HSLTGLRNIDLRGSKNLKEIPD---LSMAT 657 (1153)
T ss_pred cEEEEecC----CCCCCCCCcC-CccCCcEEECcCcc-cccccccc----ccCCCCCEEECCCCCCcCcCCc---cccCC
Confidence 44556666 3344455554 46889999998765 77788777 6789999999999877777543 67889
Q ss_pred CCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCC
Q 040122 105 NLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSN 184 (388)
Q Consensus 105 ~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 184 (388)
+|++|++++|..+..+|.. +..+++|+.|++++|..++.++ .. ..+++|+.|++.+|..+..++..
T Consensus 658 ~Le~L~L~~c~~L~~lp~s----------i~~L~~L~~L~L~~c~~L~~Lp--~~--i~l~sL~~L~Lsgc~~L~~~p~~ 723 (1153)
T PLN03210 658 NLETLKLSDCSSLVELPSS----------IQYLNKLEDLDMSRCENLEILP--TG--INLKSLYRLNLSGCSRLKSFPDI 723 (1153)
T ss_pred cccEEEecCCCCccccchh----------hhccCCCCEEeCCCCCCcCccC--Cc--CCCCCCCEEeCCCCCCccccccc
Confidence 9999999999888887664 4668999999999998888873 22 26889999999999877766532
Q ss_pred cceeeecccCCCccccccCCceEEEec-ccccccccc------------------------------cCCCCcceEEecC
Q 040122 185 STFVLHMTADNKEPQKLKSEENLLVAN-QIQHLFDEK------------------------------VAFPQLGNLRLSG 233 (388)
Q Consensus 185 ~~~~~~l~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~------------------------------~~~~~L~~L~l~~ 233 (388)
.++|+.|++.+ ....++..+ ..+++|+.|++++
T Consensus 724 ----------------~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~ 787 (1153)
T PLN03210 724 ----------------STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSD 787 (1153)
T ss_pred ----------------cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCC
Confidence 23444444444 222222211 1234555555555
Q ss_pred CCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEcccc
Q 040122 234 LHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCK 313 (388)
Q Consensus 234 ~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 313 (388)
|+.+..+|... +.+++|+.|++++|..++.+|... .+++|++|++++|..+..++. ...+|+.|+++++
T Consensus 788 n~~l~~lP~si----~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~-----~~~nL~~L~Ls~n- 856 (1153)
T PLN03210 788 IPSLVELPSSI----QNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD-----ISTNISDLNLSRT- 856 (1153)
T ss_pred CCCccccChhh----hCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc-----cccccCEeECCCC-
Confidence 55444444321 445555666665555555555443 455556666655555444321 1244555555554
Q ss_pred ccchhhcccccccCCccccccccceEecccCCCcceecCCCccccCCCcceEEeccCCCccccc
Q 040122 314 MIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFS 377 (388)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp 377 (388)
.+++++. ....+++|++|++.+|++++.++..... +++|+.+++.+|++++.++
T Consensus 857 ~i~~iP~--------si~~l~~L~~L~L~~C~~L~~l~~~~~~--L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 857 GIEEVPW--------WIEKFSNLSFLDMNGCNNLQRVSLNISK--LKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCccChH--------HHhcCCCCCEEECCCCCCcCccCccccc--ccCCCeeecCCCccccccc
Confidence 2333332 2345788999999999999988876644 7899999999999888664
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=1.6e-21 Score=206.72 Aligned_cols=303 Identities=20% Similarity=0.263 Sum_probs=225.0
Q ss_pred cCcceeeecCCCCchhHHHHhhhccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhc
Q 040122 23 EEGELHHWEGNNLNSTIQKCYDEKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRC 102 (388)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 102 (388)
.++.+++..+ +.+..++.....+++|+.++++++..+..++.. ..+++|++|++.+|..+..+|.. +++
T Consensus 611 ~~L~~L~L~~----s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~l-----s~l~~Le~L~L~~c~~L~~lp~s--i~~ 679 (1153)
T PLN03210 611 ENLVKLQMQG----SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDL-----SMATNLETLKLSDCSSLVELPSS--IQY 679 (1153)
T ss_pred cCCcEEECcC----ccccccccccccCCCCCEEECCCCCCcCcCCcc-----ccCCcccEEEecCCCCccccchh--hhc
Confidence 3456666666 567778888888999999999988766655432 46899999999999888885543 899
Q ss_pred CCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCccccc
Q 040122 103 LNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFT 182 (388)
Q Consensus 103 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 182 (388)
+++|++|++++|..++.+|.. ..+++|+.|++++|..+..++ . ..++|++|++.++ .++.+|
T Consensus 680 L~~L~~L~L~~c~~L~~Lp~~-----------i~l~sL~~L~Lsgc~~L~~~p--~----~~~nL~~L~L~~n-~i~~lP 741 (1153)
T PLN03210 680 LNKLEDLDMSRCENLEILPTG-----------INLKSLYRLNLSGCSRLKSFP--D----ISTNISWLDLDET-AIEEFP 741 (1153)
T ss_pred cCCCCEEeCCCCCCcCccCCc-----------CCCCCCCEEeCCCCCCccccc--c----ccCCcCeeecCCC-cccccc
Confidence 999999999999998888653 258899999999998777662 1 2457888888876 455555
Q ss_pred CCcceeeeccc---CC---------------CccccccCCceEEEec--ccccccccccCCCCcceEEecCCCCcceecc
Q 040122 183 SNSTFVLHMTA---DN---------------KEPQKLKSEENLLVAN--QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWK 242 (388)
Q Consensus 183 ~~~~~~~~l~~---~~---------------~~l~~l~~L~~L~l~~--~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 242 (388)
... ...+|.. .. .....+++|+.|++++ ....+|..++.+++|+.|++++|..++.+|.
T Consensus 742 ~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 742 SNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT 820 (1153)
T ss_pred ccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence 321 1122221 00 0112346899999988 4567888889999999999999999998876
Q ss_pred cCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEccccccchhhccc
Q 040122 243 ENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQ 322 (388)
Q Consensus 243 ~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 322 (388)
. ..+++|+.|++++|..+..+|.. ..+|+.|+++++ .++.++. ....+++|+.|++.+|+.++.++.
T Consensus 821 ~-----~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n-~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~~-- 887 (1153)
T PLN03210 821 G-----INLESLESLDLSGCSRLRTFPDI---STNISDLNLSRT-GIEEVPW--WIEKFSNLSFLDMNGCNNLQRVSL-- 887 (1153)
T ss_pred C-----CCccccCEEECCCCCcccccccc---ccccCEeECCCC-CCccChH--HHhcCCCCCEEECCCCCCcCccCc--
Confidence 4 35789999999999988877643 468999999885 6666543 347899999999999999988765
Q ss_pred ccccCCccccccccceEecccCCCcceecCCCcc-----------ccCCCcceEEeccCCCcc
Q 040122 323 VGEEAKDCNVFKELEYLGLDCLPSLTSFCLGNYA-----------LEFPSLKQVVVRQCPKMK 374 (388)
Q Consensus 323 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-----------~~~~~L~~L~l~~c~~l~ 374 (388)
....+++|+.+++.+|++++.++....+ ..+|+...+.+.+|.++.
T Consensus 888 ------~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 888 ------NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred ------ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence 2345689999999999998866542211 124455666677777664
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=4.3e-21 Score=202.33 Aligned_cols=275 Identities=15% Similarity=0.051 Sum_probs=122.7
Q ss_pred cCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccC
Q 040122 77 FNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCN 156 (388)
Q Consensus 77 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 156 (388)
+++|++|++++| .+....|.. ++++++|++|++++|.....+|.. +..+++|++|+++++.....+
T Consensus 139 l~~L~~L~Ls~n-~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~----------~~~l~~L~~L~L~~n~l~~~~-- 204 (968)
T PLN00113 139 IPNLETLDLSNN-MLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNS----------LTNLTSLEFLTLASNQLVGQI-- 204 (968)
T ss_pred cCCCCEEECcCC-cccccCChH-HhcCCCCCEEECccCcccccCChh----------hhhCcCCCeeeccCCCCcCcC--
Confidence 455555555554 222222222 455555555555554332233221 233455555555544322222
Q ss_pred CCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEec--ccccccccccCCCCcceEEecCC
Q 040122 157 FTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVAN--QIQHLFDEKVAFPQLGNLRLSGL 234 (388)
Q Consensus 157 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~--~~~~~~~~~~~~~~L~~L~l~~~ 234 (388)
+.. ++.+++|++|++.++.-....+. .++.+++|+.|++++ ..+.++..++.+++|+.|+++++
T Consensus 205 p~~-l~~l~~L~~L~L~~n~l~~~~p~-------------~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 270 (968)
T PLN00113 205 PRE-LGQMKSLKWIYLGYNNLSGEIPY-------------EIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270 (968)
T ss_pred ChH-HcCcCCccEEECcCCccCCcCCh-------------hHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC
Confidence 111 34455555555555421112221 145555666666555 12234445555556666665554
Q ss_pred CCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEccccc
Q 040122 235 HKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKM 314 (388)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 314 (388)
.-...++.. ...+++|++|++++|.....+|..+..+++|++|+++++.-....+ . ....+++|+.|++++|..
T Consensus 271 ~l~~~~p~~----l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-~-~~~~l~~L~~L~L~~n~l 344 (968)
T PLN00113 271 KLSGPIPPS----IFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP-V-ALTSLPRLQVLQLWSNKF 344 (968)
T ss_pred eeeccCchh----HhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC-h-hHhcCCCCCEEECcCCCC
Confidence 221112211 1344555555555554444444444555555555555442111111 1 123445555555555443
Q ss_pred cchhhccccccc----------------CCccccccccceEecccCCCcceecCCCccccCCCcceEEeccCCCcccccC
Q 040122 315 IEQIIQLQVGEE----------------AKDCNVFKELEYLGLDCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQ 378 (388)
Q Consensus 315 ~~~~~~~~~~~~----------------~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~ 378 (388)
...++..-.... ......+++|+.|++.+++....++.... .+++|+.|++.+|.....+|.
T Consensus 345 ~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~--~~~~L~~L~L~~n~l~~~~p~ 422 (968)
T PLN00113 345 SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG--ACRSLRRVRLQDNSFSGELPS 422 (968)
T ss_pred cCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHh--CCCCCCEEECcCCEeeeECCh
Confidence 222221000000 00011224455555555433233333222 267888888888776667777
Q ss_pred CCCCCCCCC
Q 040122 379 GLLDTPMLN 387 (388)
Q Consensus 379 ~~~~~~~L~ 387 (388)
.+.++++|+
T Consensus 423 ~~~~l~~L~ 431 (968)
T PLN00113 423 EFTKLPLVY 431 (968)
T ss_pred hHhcCCCCC
Confidence 777776664
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=2e-20 Score=197.25 Aligned_cols=142 Identities=18% Similarity=0.131 Sum_probs=75.6
Q ss_pred cCCCCccceeeec--------------ccCcceeeecCCCCchhHHHHhhhccCCCCcceEEecCccccc-eeccccccC
Q 040122 9 LSIPKPCKVQVTE--------------KEEGELHHWEGNNLNSTIQKCYDEKIGFLDINRLQLSHFPRLQ-EIWHGQALP 73 (388)
Q Consensus 9 ~~~~~l~~l~~~~--------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~ 73 (388)
..+++|+.|.++. ..+++.+++.++.... .+|. ..+++|++|+++++. +. ..+...
T Consensus 90 ~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~---~~p~--~~l~~L~~L~Ls~n~-~~~~~p~~~--- 160 (968)
T PLN00113 90 FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG---SIPR--GSIPNLETLDLSNNM-LSGEIPNDI--- 160 (968)
T ss_pred hCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccc---ccCc--cccCCCCEEECcCCc-ccccCChHH---
Confidence 4567777776543 3345556555522111 1222 346777777777665 33 223222
Q ss_pred ccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCccccc
Q 040122 74 VRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKR 153 (388)
Q Consensus 74 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 153 (388)
+.+++|++|++++|. +....|.. +.++++|++|++++|...+.+|.. +..+++|+.|+++++.....
T Consensus 161 -~~l~~L~~L~L~~n~-l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~----------l~~l~~L~~L~L~~n~l~~~ 227 (968)
T PLN00113 161 -GSFSSLKVLDLGGNV-LVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRE----------LGQMKSLKWIYLGYNNLSGE 227 (968)
T ss_pred -hcCCCCCEEECccCc-ccccCChh-hhhCcCCCeeeccCCCCcCcCChH----------HcCcCCccEEECcCCccCCc
Confidence 557777777777773 33323333 677777777777776544343332 24456666666655533222
Q ss_pred ccCCCCccccCCCcceEeEecC
Q 040122 154 FCNFTGNIIELPKLEYLIIENC 175 (388)
Q Consensus 154 ~~~~~~~~~~l~~L~~L~l~~c 175 (388)
+ +.. ++.+++|++|++.+|
T Consensus 228 ~--p~~-l~~l~~L~~L~L~~n 246 (968)
T PLN00113 228 I--PYE-IGGLTSLNHLDLVYN 246 (968)
T ss_pred C--Chh-HhcCCCCCEEECcCc
Confidence 2 212 445566666666555
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.66 E-value=1.8e-18 Score=161.69 Aligned_cols=280 Identities=22% Similarity=0.266 Sum_probs=141.1
Q ss_pred HhhhccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceec
Q 040122 42 CYDEKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVL 121 (388)
Q Consensus 42 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 121 (388)
+|.++..+..|..|+++.+. +.+.+.+. .+-+++..|++++| ++.+ .|...+.++.-|-+||+++ +.++.+|
T Consensus 95 iP~diF~l~dLt~lDLShNq-L~EvP~~L----E~AKn~iVLNLS~N-~Iet-IPn~lfinLtDLLfLDLS~-NrLe~LP 166 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQ-LREVPTNL----EYAKNSIVLNLSYN-NIET-IPNSLFINLTDLLFLDLSN-NRLEMLP 166 (1255)
T ss_pred CCchhcccccceeeecchhh-hhhcchhh----hhhcCcEEEEcccC-cccc-CCchHHHhhHhHhhhcccc-chhhhcC
Confidence 44444455555555555433 44333333 34445555555544 3333 2333344555555555554 2344443
Q ss_pred ccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCC-cccccCCcceeeecccCCCcccc
Q 040122 122 HLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPD-METFTSNSTFVLHMTADNKEPQK 200 (388)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~-l~~~~~~~~~~~~l~~~~~~l~~ 200 (388)
+. ...+.+|+.|++++++. ..+ ...++..+++|+.|.+++..+ +..+|.. +..
T Consensus 167 PQ----------~RRL~~LqtL~Ls~NPL-~hf--QLrQLPsmtsL~vLhms~TqRTl~N~Pts-------------ld~ 220 (1255)
T KOG0444|consen 167 PQ----------IRRLSMLQTLKLSNNPL-NHF--QLRQLPSMTSLSVLHMSNTQRTLDNIPTS-------------LDD 220 (1255)
T ss_pred HH----------HHHHhhhhhhhcCCChh-hHH--HHhcCccchhhhhhhcccccchhhcCCCc-------------hhh
Confidence 32 23455555555555442 111 001122344445555555433 2333333 455
Q ss_pred ccCCceEEEec-ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCC
Q 040122 201 LKSEENLLVAN-QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLE 279 (388)
Q Consensus 201 l~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~ 279 (388)
+.||..++++. +...+|..+-.+++|+.|++++ +.++.+.... ....+|++|+++.+ .+..+|..+..+++|+
T Consensus 221 l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~-N~iteL~~~~----~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~ 294 (1255)
T KOG0444|consen 221 LHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSG-NKITELNMTE----GEWENLETLNLSRN-QLTVLPDAVCKLTKLT 294 (1255)
T ss_pred hhhhhhccccccCCCcchHHHhhhhhhheeccCc-CceeeeeccH----HHHhhhhhhccccc-hhccchHHHhhhHHHH
Confidence 55566666555 4444555555555666666655 3444443322 34455555555553 3455565566666666
Q ss_pred EEeeccCcCcccccchhhhcCccccceeeEccccccchhhcccccccCCccccccccceEecccCCCcceecCCCccccC
Q 040122 280 ALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTSFCLGNYALEF 359 (388)
Q Consensus 280 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 359 (388)
.|...+. +++.-..++..+++..|+.+..+++ .++-+|. +.-.|+.|+.|.+.+ +.|-.+|.++.. +
T Consensus 295 kLy~n~N-kL~FeGiPSGIGKL~~Levf~aanN-~LElVPE--------glcRC~kL~kL~L~~-NrLiTLPeaIHl--L 361 (1255)
T KOG0444|consen 295 KLYANNN-KLTFEGIPSGIGKLIQLEVFHAANN-KLELVPE--------GLCRCVKLQKLKLDH-NRLITLPEAIHL--L 361 (1255)
T ss_pred HHHhccC-cccccCCccchhhhhhhHHHHhhcc-ccccCch--------hhhhhHHHHHhcccc-cceeechhhhhh--c
Confidence 6655442 3333333344455666666666554 3443333 224456777777765 356677777744 7
Q ss_pred CCcceEEeccCCCcc
Q 040122 360 PSLKQVVVRQCPKMK 374 (388)
Q Consensus 360 ~~L~~L~l~~c~~l~ 374 (388)
|-|+.|++..+|.+.
T Consensus 362 ~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 362 PDLKVLDLRENPNLV 376 (1255)
T ss_pred CCcceeeccCCcCcc
Confidence 888888888877764
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.64 E-value=1.7e-18 Score=161.94 Aligned_cols=320 Identities=18% Similarity=0.202 Sum_probs=213.9
Q ss_pred cCcceeeecCCCCchhHHHHhhhccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCc--ccCChhhh
Q 040122 23 EEGELHHWEGNNLNSTIQKCYDEKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMS--SAIPANLL 100 (388)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~ 100 (388)
++...+.|-. --.+.+..+|+++..+.+|++|.++.+. +..+.-.. ..++.|+++.+.+| +++ .+|+. +
T Consensus 29 ~qMt~~~WLk-Lnrt~L~~vPeEL~~lqkLEHLs~~HN~-L~~vhGEL----s~Lp~LRsv~~R~N-~LKnsGiP~d--i 99 (1255)
T KOG0444|consen 29 EQMTQMTWLK-LNRTKLEQVPEELSRLQKLEHLSMAHNQ-LISVHGEL----SDLPRLRSVIVRDN-NLKNSGIPTD--I 99 (1255)
T ss_pred HHhhheeEEE-echhhhhhChHHHHHHhhhhhhhhhhhh-hHhhhhhh----ccchhhHHHhhhcc-ccccCCCCch--h
Confidence 3344455554 2236678899999999999999998765 44333222 45777777777776 333 23333 6
Q ss_pred hcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCccc
Q 040122 101 RCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMET 180 (388)
Q Consensus 101 ~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 180 (388)
-++.-|..||++. +.++++|.. +....++-.|+++++ .++.+ |.+-..++..|-.|++++. +++.
T Consensus 100 F~l~dLt~lDLSh-NqL~EvP~~----------LE~AKn~iVLNLS~N-~IetI--Pn~lfinLtDLLfLDLS~N-rLe~ 164 (1255)
T KOG0444|consen 100 FRLKDLTILDLSH-NQLREVPTN----------LEYAKNSIVLNLSYN-NIETI--PNSLFINLTDLLFLDLSNN-RLEM 164 (1255)
T ss_pred cccccceeeecch-hhhhhcchh----------hhhhcCcEEEEcccC-ccccC--CchHHHhhHhHhhhccccc-hhhh
Confidence 6777778888877 355555443 233455556666553 34555 2232334555555666663 5555
Q ss_pred ccCCcceeeeccc---CC--------CccccccCCceEEEec---ccccccccccCCCCcceEEecCCCCcceecccCch
Q 040122 181 FTSNSTFVLHMTA---DN--------KEPQKLKSEENLLVAN---QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDE 246 (388)
Q Consensus 181 ~~~~~~~~~~l~~---~~--------~~l~~l~~L~~L~l~~---~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 246 (388)
+|+..-|+..|+. .+ +.+..+++|+.|.+++ +...+|.++..+.+|..++++. +++..+|.+.
T Consensus 165 LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecl-- 241 (1255)
T KOG0444|consen 165 LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECL-- 241 (1255)
T ss_pred cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHH--
Confidence 5554444333333 11 1355667777777877 5677888888999999999987 5677777654
Q ss_pred hHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEccccc-cchhhcccccc
Q 040122 247 SNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKM-IEQIIQLQVGE 325 (388)
Q Consensus 247 ~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~ 325 (388)
..+.+|+.|+++++ .++++....+...+|++|++++. .++.+|.. .-++++|+.|++.++.. .+.+|.
T Consensus 242 --y~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrN-QLt~LP~a--vcKL~kL~kLy~n~NkL~FeGiPS----- 310 (1255)
T KOG0444|consen 242 --YKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRN-QLTVLPDA--VCKLTKLTKLYANNNKLTFEGIPS----- 310 (1255)
T ss_pred --hhhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccc-hhccchHH--HhhhHHHHHHHhccCcccccCCcc-----
Confidence 78899999999996 46666566667789999999985 67776543 35789999999987754 334544
Q ss_pred cCCccccccccceEecccCCCcceecCCCccccCCCcceEEeccCCCcccccCCCCCCCCCC
Q 040122 326 EAKDCNVFKELEYLGLDCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGLLDTPMLN 387 (388)
Q Consensus 326 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~ 387 (388)
+++.+..|+.+...+ ++|.-+|.+.+. |++|+.|.+. |..+..+|.++--+|.|+
T Consensus 311 ---GIGKL~~Levf~aan-N~LElVPEglcR--C~kL~kL~L~-~NrLiTLPeaIHlL~~l~ 365 (1255)
T KOG0444|consen 311 ---GIGKLIQLEVFHAAN-NKLELVPEGLCR--CVKLQKLKLD-HNRLITLPEAIHLLPDLK 365 (1255)
T ss_pred ---chhhhhhhHHHHhhc-cccccCchhhhh--hHHHHHhccc-ccceeechhhhhhcCCcc
Confidence 334556777777766 468888888855 9999999887 566778998887666654
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.64 E-value=1.5e-16 Score=147.77 Aligned_cols=304 Identities=17% Similarity=0.154 Sum_probs=177.2
Q ss_pred hccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccc
Q 040122 45 EKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLE 124 (388)
Q Consensus 45 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~ 124 (388)
.+..+++|+++.+.++. ++.+|... +...+|+.|+|.+| .+.++.... +.-++.||.||++. +.+.+++...
T Consensus 97 ~f~nl~nLq~v~l~~N~-Lt~IP~f~----~~sghl~~L~L~~N-~I~sv~se~-L~~l~alrslDLSr-N~is~i~~~s 168 (873)
T KOG4194|consen 97 FFYNLPNLQEVNLNKNE-LTRIPRFG----HESGHLEKLDLRHN-LISSVTSEE-LSALPALRSLDLSR-NLISEIPKPS 168 (873)
T ss_pred HHhcCCcceeeeeccch-hhhccccc----ccccceeEEeeecc-ccccccHHH-HHhHhhhhhhhhhh-chhhcccCCC
Confidence 44577999999998665 77788777 66778999999887 555544433 77888899999998 4566654321
Q ss_pred cccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcce-eeeccc----------
Q 040122 125 ELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTF-VLHMTA---------- 193 (388)
Q Consensus 125 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~-~~~l~~---------- 193 (388)
+..-.++++|++.++ .++.+ ....+..+.+|-.|.+++. +++.+|...+. +.+|+.
T Consensus 169 ---------fp~~~ni~~L~La~N-~It~l--~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 169 ---------FPAKVNIKKLNLASN-RITTL--ETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred ---------CCCCCCceEEeeccc-ccccc--ccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceee
Confidence 234467888888775 35555 3333556778888888884 77777766532 221211
Q ss_pred -CCCccccccCCceEEEec-cccccc-ccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccc-c
Q 040122 194 -DNKEPQKLKSEENLLVAN-QIQHLF-DEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKL-V 269 (388)
Q Consensus 194 -~~~~l~~l~~L~~L~l~~-~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~-~ 269 (388)
.+-.++++++|+.|.+.. ....+. ..+..+.++++|++.. +.++....+. +..++.|+.|+++.+. ++.+ +
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~---lfgLt~L~~L~lS~Na-I~rih~ 310 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGW---LFGLTSLEQLDLSYNA-IQRIHI 310 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc-chhhhhhccc---ccccchhhhhccchhh-hheeec
Confidence 011344555555555544 222221 1122345666666655 3444443332 2667788888888764 3333 4
Q ss_pred CCccccCCCCEEeeccCcCcccccchhhhcCcc------------------------ccceeeEccccccchhhcccccc
Q 040122 270 PPSWHLENLEALKVSKCHELINVLTLSASKNLV------------------------NLGRMMIADCKMIEQIIQLQVGE 325 (388)
Q Consensus 270 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~------------------------~L~~L~l~~~~~~~~~~~~~~~~ 325 (388)
.....+++|+.|+++.. .++.++..++ ..++ +|++|++..+.....+ +|...
T Consensus 311 d~WsftqkL~~LdLs~N-~i~~l~~~sf-~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I--EDaa~ 386 (873)
T KOG4194|consen 311 DSWSFTQKLKELDLSSN-RITRLDEGSF-RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCI--EDAAV 386 (873)
T ss_pred chhhhcccceeEecccc-ccccCChhHH-HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEE--ecchh
Confidence 44455678888888864 4555533222 2334 4444444443321111 11111
Q ss_pred cCCccccccccceEecccCCCcceecCCCccccCCCcceEEeccCCCcccccCCCCCC
Q 040122 326 EAKDCNVFKELEYLGLDCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGLLDT 383 (388)
Q Consensus 326 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~ 383 (388)
....+++|+.|.+.+. ++++++..+. ..+++||.|++.+++..+.=|..+..+
T Consensus 387 ---~f~gl~~LrkL~l~gN-qlk~I~krAf-sgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 387 ---AFNGLPSLRKLRLTGN-QLKSIPKRAF-SGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred ---hhccchhhhheeecCc-eeeecchhhh-ccCcccceecCCCCcceeecccccccc
Confidence 1244678888888774 6777766441 127888888888877554445555554
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.63 E-value=7.5e-17 Score=149.82 Aligned_cols=152 Identities=21% Similarity=0.248 Sum_probs=84.9
Q ss_pred cccccCCceEEEec-ccccc-cccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccC-Cccc
Q 040122 198 PQKLKSEENLLVAN-QIQHL-FDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVP-PSWH 274 (388)
Q Consensus 198 l~~l~~L~~L~l~~-~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~-~~~~ 274 (388)
+-+++.|+.|+++. ....+ ..+....++|+.|+++. +.++.++.+.+ ..+..|++|.++++. +..+.. .+..
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf---~~L~~Le~LnLs~Ns-i~~l~e~af~~ 363 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSF---RVLSQLEELNLSHNS-IDHLAEGAFVG 363 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhhcccceeEeccc-cccccCChhHH---HHHHHhhhhcccccc-hHHHHhhHHHH
Confidence 44555555555554 11111 22233455666666665 45666655543 445566666666653 222221 3456
Q ss_pred cCCCCEEeeccCc---CcccccchhhhcCccccceeeEccccccchhhcccccccCCccccccccceEecccCCCcceec
Q 040122 275 LENLEALKVSKCH---ELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTSFC 351 (388)
Q Consensus 275 ~~~L~~L~l~~c~---~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 351 (388)
+.+|+.|++.+.. -++|.... + ..+++|+.|.+.++ .++.++.. ....++.|++|++.+.+ +.++.
T Consensus 364 lssL~~LdLr~N~ls~~IEDaa~~-f-~gl~~LrkL~l~gN-qlk~I~kr-------Afsgl~~LE~LdL~~Na-iaSIq 432 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIEDAAVA-F-NGLPSLRKLRLTGN-QLKSIPKR-------AFSGLEALEHLDLGDNA-IASIQ 432 (873)
T ss_pred hhhhhhhcCcCCeEEEEEecchhh-h-ccchhhhheeecCc-eeeecchh-------hhccCcccceecCCCCc-ceeec
Confidence 6888888887642 13332222 2 45999999999987 46666541 12457889999998864 55554
Q ss_pred CCCccccCCCcceEEe
Q 040122 352 LGNYALEFPSLKQVVV 367 (388)
Q Consensus 352 ~~~~~~~~~~L~~L~l 367 (388)
..+.. .+ .|++|.+
T Consensus 433 ~nAFe-~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 433 PNAFE-PM-ELKELVM 446 (873)
T ss_pred ccccc-cc-hhhhhhh
Confidence 43311 12 5666554
No 9
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.47 E-value=3.4e-16 Score=140.21 Aligned_cols=296 Identities=18% Similarity=0.182 Sum_probs=199.0
Q ss_pred CCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceeccccccccc
Q 040122 50 LDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAK 129 (388)
Q Consensus 50 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~ 129 (388)
.-|+.|.+.+|..+.+..... .. ..++++++|.+.+|.++++..-..+...|++|++|++..|..++... +.++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt-~~-~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~-Lk~l--- 211 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRT-FA-SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVS-LKYL--- 211 (483)
T ss_pred cccccccccccccCCcchhhH-Hh-hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHH-HHHH---
Confidence 458999999988777544444 22 57899999999999888876655667889999999999987766531 1111
Q ss_pred ccccCCcCccccEeecccCcccccccCCCCc-cccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEE
Q 040122 130 EEHIGPLFPRLLSLKLIDLPKLKRFCNFTGN-IIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLL 208 (388)
Q Consensus 130 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~ 208 (388)
...|++|++|+++.|+.+.+- +... .-++..++.+...+|..+..-..... -+.++.+.+++
T Consensus 212 ----a~gC~kL~~lNlSwc~qi~~~--gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~-----------~~~~~~i~~ln 274 (483)
T KOG4341|consen 212 ----AEGCRKLKYLNLSWCPQISGN--GVQALQRGCKELEKLSLKGCLELELEALLKA-----------AAYCLEILKLN 274 (483)
T ss_pred ----HHhhhhHHHhhhccCchhhcC--cchHHhccchhhhhhhhcccccccHHHHHHH-----------hccChHhhccc
Confidence 356999999999999876652 1110 23566677777778865432221111 22334444444
Q ss_pred Eec----ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccC--CccccCCCCEEe
Q 040122 209 VAN----QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVP--PSWHLENLEALK 282 (388)
Q Consensus 209 l~~----~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~--~~~~~~~L~~L~ 282 (388)
+.. +...++..-..+..|+.|..++|..+++.....+ ..++.+|+.+.++.|..++..-. -..+++.|+.++
T Consensus 275 l~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aL--g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~ 352 (483)
T KOG4341|consen 275 LQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWAL--GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLD 352 (483)
T ss_pred hhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHH--hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhc
Confidence 333 2222333334577889999999888766443222 26788999999999987765422 124678999999
Q ss_pred eccCcCcccccchhhhcCccccceeeEccccccchhhcccccccCCccc--cccccceEecccCCCcceecCCCccccCC
Q 040122 283 VSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCN--VFKELEYLGLDCLPSLTSFCLGNYALEFP 360 (388)
Q Consensus 283 l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 360 (388)
+..|..+.+......+.+++.||.+.++.|+.+++- |+.+.... ....|..+.+.+||.+++-..... ..++
T Consensus 353 ~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~-----gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l-~~c~ 426 (483)
T KOG4341|consen 353 LEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE-----GIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL-SICR 426 (483)
T ss_pred ccccceehhhhHhhhccCCchhccCChhhhhhhhhh-----hhhhhhhccccccccceeeecCCCCchHHHHHHH-hhCc
Confidence 999887777655556789999999999999876543 33332222 235788999999988765544331 1378
Q ss_pred CcceEEeccCCCcccc
Q 040122 361 SLKQVVVRQCPKMKIF 376 (388)
Q Consensus 361 ~L~~L~l~~c~~l~~l 376 (388)
+|+.+++.+|..++.-
T Consensus 427 ~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 427 NLERIELIDCQDVTKE 442 (483)
T ss_pred ccceeeeechhhhhhh
Confidence 9999999999887643
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.40 E-value=3e-12 Score=128.03 Aligned_cols=280 Identities=17% Similarity=0.081 Sum_probs=128.3
Q ss_pred cCcceeeecCC-CCchhHHHHhhhc--cCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhh
Q 040122 23 EEGELHHWEGN-NLNSTIQKCYDEK--IGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANL 99 (388)
Q Consensus 23 ~~~~~~~~~~~-~~~~~~~~l~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 99 (388)
..|.+|...+. ++...-......+ +.-..-..|+++++. ++.+|... .++|+.|++.+| +++.+|.
T Consensus 171 ~~w~~w~~~~~~~e~~~r~~a~~r~~~Cl~~~~~~LdLs~~~-LtsLP~~l------~~~L~~L~L~~N-~Lt~LP~--- 239 (788)
T PRK15387 171 AVWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESG-LTTLPDCL------PAHITTLVIPDN-NLTSLPA--- 239 (788)
T ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHHhcCCCcEEEcCCCC-CCcCCcch------hcCCCEEEccCC-cCCCCCC---
Confidence 34666766653 3322211222222 222446667777664 55444333 346777777776 5665432
Q ss_pred hhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcc
Q 040122 100 LRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDME 179 (388)
Q Consensus 100 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 179 (388)
.+++|++|++++| .++.+|.. .++|+.|+++++. +..++ . ..++|+.|++.++ .++
T Consensus 240 --lp~~Lk~LdLs~N-~LtsLP~l-------------p~sL~~L~Ls~N~-L~~Lp--~----lp~~L~~L~Ls~N-~Lt 295 (788)
T PRK15387 240 --LPPELRTLEVSGN-QLTSLPVL-------------PPGLLELSIFSNP-LTHLP--A----LPSGLCKLWIFGN-QLT 295 (788)
T ss_pred --CCCCCcEEEecCC-ccCcccCc-------------ccccceeeccCCc-hhhhh--h----chhhcCEEECcCC-ccc
Confidence 2467778888774 45555431 3455666665542 33331 0 1234445555443 333
Q ss_pred cccCCcceeeecccCCCc---c-ccccCCceEEEec-ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccc
Q 040122 180 TFTSNSTFVLHMTADNKE---P-QKLKSEENLLVAN-QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANL 254 (388)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~---l-~~l~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L 254 (388)
.+|.....+..|.-.+.. + ....+|+.|++++ ....++. ..++|+.|++++ +.++.+|. ..++|
T Consensus 296 ~LP~~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~---lp~~Lq~LdLS~-N~Ls~LP~-------lp~~L 364 (788)
T PRK15387 296 SLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPT---LPSGLQELSVSD-NQLASLPT-------LPSEL 364 (788)
T ss_pred cccccccccceeECCCCccccCCCCcccccccccccCccccccc---cccccceEecCC-CccCCCCC-------CCccc
Confidence 333210000000000000 0 0012344444443 2222221 113555666655 34444442 12445
Q ss_pred cEEEEecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEccccccchhhcccccccCCcccccc
Q 040122 255 ERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFK 334 (388)
Q Consensus 255 ~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (388)
+.|+++++. +..+|.. ..+|+.|+++++ .+..++. ..++|+.|++++|. +..++. .+.
T Consensus 365 ~~L~Ls~N~-L~~LP~l---~~~L~~LdLs~N-~Lt~LP~-----l~s~L~~LdLS~N~-LssIP~-----------l~~ 422 (788)
T PRK15387 365 YKLWAYNNR-LTSLPAL---PSGLKELIVSGN-RLTSLPV-----LPSELKELMVSGNR-LTSLPM-----------LPS 422 (788)
T ss_pred ceehhhccc-cccCccc---ccccceEEecCC-cccCCCC-----cccCCCEEEccCCc-CCCCCc-----------chh
Confidence 555555542 3334321 235666666654 3443332 12456666666653 333332 124
Q ss_pred ccceEecccCCCcceecCCCccccCCCcceEEeccCCCc
Q 040122 335 ELEYLGLDCLPSLTSFCLGNYALEFPSLKQVVVRQCPKM 373 (388)
Q Consensus 335 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l 373 (388)
.|+.|++.++ .++.+|..... +++|+.+++.+++--
T Consensus 423 ~L~~L~Ls~N-qLt~LP~sl~~--L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 423 GLLSLSVYRN-QLTRLPESLIH--LSSETTVNLEGNPLS 458 (788)
T ss_pred hhhhhhhccC-cccccChHHhh--ccCCCeEECCCCCCC
Confidence 5666666663 46666655433 677777777776643
No 11
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.39 E-value=4.5e-15 Score=133.09 Aligned_cols=268 Identities=18% Similarity=0.210 Sum_probs=192.9
Q ss_pred CCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccCC
Q 040122 78 NNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNF 157 (388)
Q Consensus 78 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 157 (388)
..|+.|.+.+|......+...+..++||+++|++.+|..++..--. +....|++|+++++..|..++.....
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~--------sla~~C~~l~~l~L~~c~~iT~~~Lk 209 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLL--------SLARYCRKLRHLNLHSCSSITDVSLK 209 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHH--------HHHHhcchhhhhhhcccchhHHHHHH
Confidence 4688999999988776555556789999999999999866542111 11367999999999999888765221
Q ss_pred CCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEec----ccccccccccCCCCcceEEecC
Q 040122 158 TGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVAN----QIQHLFDEKVAFPQLGNLRLSG 233 (388)
Q Consensus 158 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~----~~~~~~~~~~~~~~L~~L~l~~ 233 (388)
.- ...|++|++|.++.|+.++....... ..++..++.+...+ ....+....+..+-+..+++.+
T Consensus 210 ~l-a~gC~kL~~lNlSwc~qi~~~gv~~~-----------~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~ 277 (483)
T KOG4341|consen 210 YL-AEGCRKLKYLNLSWCPQISGNGVQAL-----------QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQH 277 (483)
T ss_pred HH-HHhhhhHHHhhhccCchhhcCcchHH-----------hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhh
Confidence 11 34799999999999999888665554 56677777776665 2222333334456677778888
Q ss_pred CCCcceecccCchhHhhhccccEEEEecCCCccccc--CCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEcc
Q 040122 234 LHKVQHLWKENDESNKAFANLERLEISECSKLQKLV--PPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIAD 311 (388)
Q Consensus 234 ~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~--~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 311 (388)
|..+++...- .....+..|+.+..++|..+...+ .-..+.++|+.|.++.|..+++.....+..+++.|+.+++..
T Consensus 278 c~~lTD~~~~--~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~ 355 (483)
T KOG4341|consen 278 CNQLTDEDLW--LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEE 355 (483)
T ss_pred hccccchHHH--HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccc
Confidence 8777764311 122567889999999998765432 123567999999999999999887777788999999999999
Q ss_pred ccccchhhcccccccCCccccccccceEecccCCCccee-----cCCCccccCCCcceEEeccCCCccc
Q 040122 312 CKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTSF-----CLGNYALEFPSLKQVVVRQCPKMKI 375 (388)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~~~~L~~L~l~~c~~l~~ 375 (388)
|....+... .. -...++.|+.|.+++|...++- ..+. .....|+.+++++||.++.
T Consensus 356 ~~~~~d~tL-----~s-ls~~C~~lr~lslshce~itD~gi~~l~~~~--c~~~~l~~lEL~n~p~i~d 416 (483)
T KOG4341|consen 356 CGLITDGTL-----AS-LSRNCPRLRVLSLSHCELITDEGIRHLSSSS--CSLEGLEVLELDNCPLITD 416 (483)
T ss_pred cceehhhhH-----hh-hccCCchhccCChhhhhhhhhhhhhhhhhcc--ccccccceeeecCCCCchH
Confidence 876654411 11 2256899999999999776654 2222 2267899999999998874
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.33 E-value=6e-12 Score=125.89 Aligned_cols=239 Identities=17% Similarity=0.107 Sum_probs=143.1
Q ss_pred HHHHhhhccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccc
Q 040122 39 IQKCYDEKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLE 118 (388)
Q Consensus 39 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 118 (388)
+..+|..+. ++|+.|.+.++. ++.++ ..+++|++|++++| +++.++. ..++|++|++++| .+.
T Consensus 213 LtsLP~~l~--~~L~~L~L~~N~-Lt~LP-------~lp~~Lk~LdLs~N-~LtsLP~-----lp~sL~~L~Ls~N-~L~ 275 (788)
T PRK15387 213 LTTLPDCLP--AHITTLVIPDNN-LTSLP-------ALPPELRTLEVSGN-QLTSLPV-----LPPGLLELSIFSN-PLT 275 (788)
T ss_pred CCcCCcchh--cCCCEEEccCCc-CCCCC-------CCCCCCcEEEecCC-ccCcccC-----cccccceeeccCC-chh
Confidence 344565543 478888888654 55433 23578888888887 6766443 2357788888775 344
Q ss_pred eecccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCcc
Q 040122 119 EVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEP 198 (388)
Q Consensus 119 ~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l 198 (388)
.++.. ..+|+.|+++++ .++.+ +. ..++|++|+++++ .++.++.....+..|...+..+
T Consensus 276 ~Lp~l-------------p~~L~~L~Ls~N-~Lt~L--P~----~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~L 334 (788)
T PRK15387 276 HLPAL-------------PSGLCKLWIFGN-QLTSL--PV----LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQL 334 (788)
T ss_pred hhhhc-------------hhhcCEEECcCC-ccccc--cc----cccccceeECCCC-ccccCCCCcccccccccccCcc
Confidence 44321 345556666554 33443 11 2345666666654 4444332111111111111112
Q ss_pred cc----ccCCceEEEec-ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCcc
Q 040122 199 QK----LKSEENLLVAN-QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSW 273 (388)
Q Consensus 199 ~~----l~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~ 273 (388)
.. ..+|+.|++++ ....++.. .++|+.|++++ +.+..++ ...++|+.|++++|. +..+|..
T Consensus 335 ~~LP~lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~-N~L~~LP-------~l~~~L~~LdLs~N~-Lt~LP~l-- 400 (788)
T PRK15387 335 TSLPTLPSGLQELSVSDNQLASLPTL---PSELYKLWAYN-NRLTSLP-------ALPSGLKELIVSGNR-LTSLPVL-- 400 (788)
T ss_pred ccccccccccceEecCCCccCCCCCC---Ccccceehhhc-cccccCc-------ccccccceEEecCCc-ccCCCCc--
Confidence 21 24799999988 44444432 45788888887 4567665 234689999999974 5556543
Q ss_pred ccCCCCEEeeccCcCcccccchhhhcCccccceeeEccccccchhhcccccccCCccccccccceEecccCC
Q 040122 274 HLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLP 345 (388)
Q Consensus 274 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 345 (388)
.++|+.|+++++ .++.++. ...+|+.|++++|. ++.++. ....+++|+.|++++++
T Consensus 401 -~s~L~~LdLS~N-~LssIP~-----l~~~L~~L~Ls~Nq-Lt~LP~--------sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 401 -PSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRNQ-LTRLPE--------SLIHLSSETTVNLEGNP 456 (788)
T ss_pred -ccCCCEEEccCC-cCCCCCc-----chhhhhhhhhccCc-ccccCh--------HHhhccCCCeEECCCCC
Confidence 468999999996 5666542 23468889998864 555654 22456899999999875
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.32 E-value=2.7e-14 Score=127.51 Aligned_cols=60 Identities=20% Similarity=0.192 Sum_probs=41.2
Q ss_pred cccccCCceEEEec-ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCC
Q 040122 198 PQKLKSEENLLVAN-QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECS 263 (388)
Q Consensus 198 l~~l~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~ 263 (388)
..+++++..|++.+ ...++|.++..+.+|.+|++++ +.+..++... +.+ +|+.|.+.+++
T Consensus 248 ~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSN-N~is~Lp~sL----gnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 248 LKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSN-NDISSLPYSL----GNL-HLKFLALEGNP 308 (565)
T ss_pred hcccccceeeeccccccccCchHHHHhhhhhhhcccC-CccccCCccc----ccc-eeeehhhcCCc
Confidence 45677777888777 6777787777788888888887 4566666443 555 66666665544
No 14
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.22 E-value=5.7e-12 Score=128.51 Aligned_cols=125 Identities=24% Similarity=0.367 Sum_probs=88.2
Q ss_pred hhhccccEEEEecCCCcccccCC-----cc-ccCCCCEEeeccCcCcccccchhhhcCccccceeeEccccccchhhccc
Q 040122 249 KAFANLERLEISECSKLQKLVPP-----SW-HLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQ 322 (388)
Q Consensus 249 ~~~~~L~~L~i~~~~~~~~~~~~-----~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 322 (388)
..+.+|+.|.|.+|...+..... .. .++++..+.+.+|..++++.+. .-.++|+.|++..|+..+++....
T Consensus 714 ~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~---~f~~~L~~l~l~~~~~~e~~i~~~ 790 (889)
T KOG4658|consen 714 GSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL---LFAPHLTSLSLVSCRLLEDIIPKL 790 (889)
T ss_pred ccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh---hccCcccEEEEecccccccCCCHH
Confidence 67789999999998775432211 11 2567777888888877776544 334889999999999888887655
Q ss_pred ccccCCc--cccccccceE-ecccCCCcceecCCCccccCCCcceEEeccCCCcccccC
Q 040122 323 VGEEAKD--CNVFKELEYL-GLDCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQ 378 (388)
Q Consensus 323 ~~~~~~~--~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~ 378 (388)
..+.... ...|..+..+ .+.+.+.+.++...... ++.|+.+.+..||+++.+|.
T Consensus 791 k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~--~~~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 791 KALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLS--FLKLEELIVEECPKLGKLPL 847 (889)
T ss_pred HHhhhcccEEecccccccceeeecCCCCceeEecccC--ccchhheehhcCcccccCcc
Confidence 5554433 3566777777 46666666666554433 67799999999999988885
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.16 E-value=1.6e-13 Score=122.64 Aligned_cols=253 Identities=21% Similarity=0.211 Sum_probs=156.1
Q ss_pred ccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccCCCC
Q 040122 80 LAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTG 159 (388)
Q Consensus 80 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 159 (388)
++.+.++.+ .+..+.+. +.++..|.+|++.++. +..+|+. .+.+..++.++.+.. ++..+ ++.
T Consensus 47 l~~lils~N-~l~~l~~d--l~nL~~l~vl~~~~n~-l~~lp~a----------ig~l~~l~~l~vs~n-~ls~l--p~~ 109 (565)
T KOG0472|consen 47 LQKLILSHN-DLEVLRED--LKNLACLTVLNVHDNK-LSQLPAA----------IGELEALKSLNVSHN-KLSEL--PEQ 109 (565)
T ss_pred hhhhhhccC-chhhccHh--hhcccceeEEEeccch-hhhCCHH----------HHHHHHHHHhhcccc-hHhhc--cHH
Confidence 444455544 23322222 4555555555555532 2222222 133444555555443 23333 222
Q ss_pred ccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEec-ccccccccccCCCCcceEEecCCCCcc
Q 040122 160 NIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVAN-QIQHLFDEKVAFPQLGNLRLSGLHKVQ 238 (388)
Q Consensus 160 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~ 238 (388)
++..++|..++.++. .+..++.+ ++.+..++.++..+ .....+...+.+.++..+.+.+ +++.
T Consensus 110 -i~s~~~l~~l~~s~n-~~~el~~~-------------i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~-n~l~ 173 (565)
T KOG0472|consen 110 -IGSLISLVKLDCSSN-ELKELPDS-------------IGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG-NKLK 173 (565)
T ss_pred -Hhhhhhhhhhhcccc-ceeecCch-------------HHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc-cchh
Confidence 445555555555553 34444433 44455555555444 4445555556666777777766 4566
Q ss_pred eecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEccccccchh
Q 040122 239 HLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQI 318 (388)
Q Consensus 239 ~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 318 (388)
..++.. -.++.|++|+...+ .++.+|+.++.+.+|..|++.+. ++..+|.. ..|..|.+|++..+ .++.+
T Consensus 174 ~l~~~~----i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~N-ki~~lPef---~gcs~L~Elh~g~N-~i~~l 243 (565)
T KOG0472|consen 174 ALPENH----IAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRN-KIRFLPEF---PGCSLLKELHVGEN-QIEML 243 (565)
T ss_pred hCCHHH----HHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhc-ccccCCCC---CccHHHHHHHhccc-HHHhh
Confidence 666543 44788888887664 67888999999999999999874 67777632 67788999998765 45555
Q ss_pred hcccccccCCccccccccceEecccCCCcceecCCCccccCCCcceEEeccCCCcccccCCCCCCCCCC
Q 040122 319 IQLQVGEEAKDCNVFKELEYLGLDCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGLLDTPMLN 387 (388)
Q Consensus 319 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~ 387 (388)
+.. ....++++..|++.+. +++++|.+.+- +.+|++|++++ ..++.+|-.++++ .|+
T Consensus 244 pae-------~~~~L~~l~vLDLRdN-klke~Pde~cl--LrsL~rLDlSN-N~is~Lp~sLgnl-hL~ 300 (565)
T KOG0472|consen 244 PAE-------HLKHLNSLLVLDLRDN-KLKEVPDEICL--LRSLERLDLSN-NDISSLPYSLGNL-HLK 300 (565)
T ss_pred HHH-------Hhcccccceeeecccc-ccccCchHHHH--hhhhhhhcccC-CccccCCcccccc-eee
Confidence 441 1135688889999884 79999998855 78899999997 5688999988888 454
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.15 E-value=1.7e-10 Score=116.08 Aligned_cols=249 Identities=16% Similarity=0.112 Sum_probs=152.6
Q ss_pred cCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccc
Q 040122 47 IGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEEL 126 (388)
Q Consensus 47 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~ 126 (388)
+...+...|++++.. ++.++... .++|+.|++++| +++.++. . ..++|++|++++| .++.+|..
T Consensus 175 Cl~~~~~~L~L~~~~-LtsLP~~I------p~~L~~L~Ls~N-~LtsLP~-~---l~~nL~~L~Ls~N-~LtsLP~~--- 238 (754)
T PRK15370 175 CLKNNKTELRLKILG-LTTIPACI------PEQITTLILDNN-ELKSLPE-N---LQGNIKTLYANSN-QLTSIPAT--- 238 (754)
T ss_pred hcccCceEEEeCCCC-cCcCCccc------ccCCcEEEecCC-CCCcCCh-h---hccCCCEEECCCC-ccccCChh---
Confidence 344567888888764 65544322 467889999887 6776443 2 2358999999885 46666432
Q ss_pred cccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCce
Q 040122 127 SAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEEN 206 (388)
Q Consensus 127 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~ 206 (388)
...+|+.|+++++. +..+ +.. ..++|+.|+++++ +++.+|.. + .++|+.
T Consensus 239 ---------l~~~L~~L~Ls~N~-L~~L--P~~---l~s~L~~L~Ls~N-~L~~LP~~-------------l--~~sL~~ 287 (754)
T PRK15370 239 ---------LPDTIQEMELSINR-ITEL--PER---LPSALQSLDLFHN-KISCLPEN-------------L--PEELRY 287 (754)
T ss_pred ---------hhccccEEECcCCc-cCcC--Chh---HhCCCCEEECcCC-ccCccccc-------------c--CCCCcE
Confidence 23578888888764 4555 222 2357888888864 67666543 2 247888
Q ss_pred EEEec-ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeecc
Q 040122 207 LLVAN-QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSK 285 (388)
Q Consensus 207 L~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~ 285 (388)
|++++ ....++..+ .++|+.|+++++ .++.++. ...++|+.|++++|. +..+|..+ .++|+.|++++
T Consensus 288 L~Ls~N~Lt~LP~~l--p~sL~~L~Ls~N-~Lt~LP~------~l~~sL~~L~Ls~N~-Lt~LP~~l--~~sL~~L~Ls~ 355 (754)
T PRK15370 288 LSVYDNSIRTLPAHL--PSGITHLNVQSN-SLTALPE------TLPPGLKTLEAGENA-LTSLPASL--PPELQVLDVSK 355 (754)
T ss_pred EECCCCccccCcccc--hhhHHHHHhcCC-ccccCCc------cccccceeccccCCc-cccCChhh--cCcccEEECCC
Confidence 88877 333343322 246777888774 4555543 233678888888874 44565443 26888888887
Q ss_pred CcCcccccchhhhcCccccceeeEccccccchhhcccccccCCccccccccceEecccCCCcceecCCCcc--ccCCCcc
Q 040122 286 CHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTSFCLGNYA--LEFPSLK 363 (388)
Q Consensus 286 c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~~~~L~ 363 (388)
+ .+..++.. + .++|+.|++++|. +..++. .....|+.|+++++ ++..++..... ..+|++.
T Consensus 356 N-~L~~LP~~-l---p~~L~~LdLs~N~-Lt~LP~----------~l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~ 418 (754)
T PRK15370 356 N-QITVLPET-L---PPTITTLDVSRNA-LTNLPE----------NLPAALQIMQASRN-NLVRLPESLPHFRGEGPQPT 418 (754)
T ss_pred C-CCCcCChh-h---cCCcCEEECCCCc-CCCCCH----------hHHHHHHHHhhccC-CcccCchhHHHHhhcCCCcc
Confidence 6 45554321 1 2578888888874 444443 11246777777774 45555543211 1246777
Q ss_pred eEEeccCC
Q 040122 364 QVVVRQCP 371 (388)
Q Consensus 364 ~L~l~~c~ 371 (388)
.+.+.+++
T Consensus 419 ~L~L~~Np 426 (754)
T PRK15370 419 RIIVEYNP 426 (754)
T ss_pred EEEeeCCC
Confidence 88887766
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.11 E-value=6.7e-13 Score=129.95 Aligned_cols=168 Identities=17% Similarity=0.167 Sum_probs=92.8
Q ss_pred cCCceEEEec-ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCE
Q 040122 202 KSEENLLVAN-QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEA 280 (388)
Q Consensus 202 ~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~ 280 (388)
.+|+.++++. ....++.-++.+.+|+.+.+.+ +.+..++... ...++|+.|.+..| .++-+|+....+..|++
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~-N~l~~lp~ri----~~~~~L~~l~~~~n-el~yip~~le~~~sL~t 314 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANH-NRLVALPLRI----SRITSLVSLSAAYN-ELEYIPPFLEGLKSLRT 314 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccc-hhHHhhHHHH----hhhhhHHHHHhhhh-hhhhCCCcccccceeee
Confidence 3566666666 4455555556666777666665 3444444332 33455555555554 34555666666777777
Q ss_pred EeeccCcCcccccchhhh------------------------cCccccceeeEccccccchhhcccccccCCcccccccc
Q 040122 281 LKVSKCHELINVLTLSAS------------------------KNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKEL 336 (388)
Q Consensus 281 L~l~~c~~l~~~~~~~~~------------------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 336 (388)
|++... ++.+++...+. ...+.|+.|++.++..-..... -...+++|
T Consensus 315 LdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p--------~l~~~~hL 385 (1081)
T KOG0618|consen 315 LDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP--------VLVNFKHL 385 (1081)
T ss_pred eeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh--------hhccccce
Confidence 777653 44444332111 1223344444444422211111 12556788
Q ss_pred ceEecccCCCcceecCCCccccCCCcceEEeccCCCcccccCCCCCCCCCC
Q 040122 337 EYLGLDCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGLLDTPMLN 387 (388)
Q Consensus 337 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~ 387 (388)
|.|++++. .+.+++..... .++.|++|.+++ .+++.+|..+..+..|+
T Consensus 386 KVLhLsyN-rL~~fpas~~~-kle~LeeL~LSG-NkL~~Lp~tva~~~~L~ 433 (1081)
T KOG0618|consen 386 KVLHLSYN-RLNSFPASKLR-KLEELEELNLSG-NKLTTLPDTVANLGRLH 433 (1081)
T ss_pred eeeeeccc-ccccCCHHHHh-chHHhHHHhccc-chhhhhhHHHHhhhhhH
Confidence 88888885 57777665421 267778888887 44677776666555543
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.11 E-value=5.2e-12 Score=123.82 Aligned_cols=255 Identities=20% Similarity=0.174 Sum_probs=154.3
Q ss_pred CCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceeccccccccc
Q 040122 50 LDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAK 129 (388)
Q Consensus 50 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~ 129 (388)
++|+.|..+.++-.+ .- ......+|++++++++ ++..+| .++..+.+|+.+++..+ .+..+|.-
T Consensus 219 ~~l~~L~a~~n~l~~-~~-----~~p~p~nl~~~dis~n-~l~~lp--~wi~~~~nle~l~~n~N-~l~~lp~r------ 282 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTT-LD-----VHPVPLNLQYLDISHN-NLSNLP--EWIGACANLEALNANHN-RLVALPLR------ 282 (1081)
T ss_pred cchheeeeccCccee-ec-----cccccccceeeecchh-hhhcch--HHHHhcccceEecccch-hHHhhHHH------
Confidence 677777777776332 11 1134578999999988 677744 45899999999999885 44554432
Q ss_pred ccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeee--cccC-----------CC
Q 040122 130 EEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLH--MTAD-----------NK 196 (388)
Q Consensus 130 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~--l~~~-----------~~ 196 (388)
....++|++|.+..+ .++.+ +.. ...+.+|++|++... ++..+|.....+.+ ++.. .-
T Consensus 283 ----i~~~~~L~~l~~~~n-el~yi--p~~-le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~ 353 (1081)
T KOG0618|consen 283 ----ISRITSLVSLSAAYN-ELEYI--PPF-LEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY 353 (1081)
T ss_pred ----HhhhhhHHHHHhhhh-hhhhC--CCc-ccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccc
Confidence 244677777777655 35555 222 446778888888774 56666554332211 1110 00
Q ss_pred ccccccCCceEEEec--ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccc
Q 040122 197 EPQKLKSEENLLVAN--QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWH 274 (388)
Q Consensus 197 ~l~~l~~L~~L~l~~--~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~ 274 (388)
+-..++.|+.|.+.+ -....++.+.++++|+.|++++ +.++.+|...+ ..++.|++|+++++ +++.+|..+..
T Consensus 354 ~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~---~kle~LeeL~LSGN-kL~~Lp~tva~ 428 (1081)
T KOG0618|consen 354 EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPASKL---RKLEELEELNLSGN-KLTTLPDTVAN 428 (1081)
T ss_pred cchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-cccccCCHHHH---hchHHhHHHhcccc-hhhhhhHHHHh
Confidence 122344566666665 3344556667778888888887 46776665433 56677888888885 56667777777
Q ss_pred cCCCCEEeeccCcCcccccchhhhcCccccceeeEccccccchhhcccccccCCccccccccceEecccCCC
Q 040122 275 LENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPS 346 (388)
Q Consensus 275 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 346 (388)
++.|++|...+. .+..+|. ..+++.|+.+|++.+. +..+... + ....+.|++|++++.+.
T Consensus 429 ~~~L~tL~ahsN-~l~~fPe---~~~l~qL~~lDlS~N~-L~~~~l~-~------~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 429 LGRLHTLRAHSN-QLLSFPE---LAQLPQLKVLDLSCNN-LSEVTLP-E------ALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhHHHhhcCC-ceeechh---hhhcCcceEEecccch-hhhhhhh-h------hCCCcccceeeccCCcc
Confidence 777777766542 4555442 2466777777876553 3333220 0 01126777777777654
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.01 E-value=7e-10 Score=111.70 Aligned_cols=236 Identities=16% Similarity=0.125 Sum_probs=142.3
Q ss_pred HHHHhhhccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccc
Q 040122 39 IQKCYDEKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLE 118 (388)
Q Consensus 39 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 118 (388)
+..+|..+ .++|+.|+++++. +..++... +++|++|++++| +++.++. . + .++|+.|++++|. +.
T Consensus 190 LtsLP~~I--p~~L~~L~Ls~N~-LtsLP~~l------~~nL~~L~Ls~N-~LtsLP~-~-l--~~~L~~L~Ls~N~-L~ 254 (754)
T PRK15370 190 LTTIPACI--PEQITTLILDNNE-LKSLPENL------QGNIKTLYANSN-QLTSIPA-T-L--PDTIQEMELSINR-IT 254 (754)
T ss_pred cCcCCccc--ccCCcEEEecCCC-CCcCChhh------ccCCCEEECCCC-ccccCCh-h-h--hccccEEECcCCc-cC
Confidence 33455444 2579999998764 76554333 578999999987 6776433 2 2 3579999999864 55
Q ss_pred eecccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCcc
Q 040122 119 EVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEP 198 (388)
Q Consensus 119 ~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l 198 (388)
.+|.. ..++|+.|+++++ .+..+ +.. -.++|+.|++++| +++.+|.. +
T Consensus 255 ~LP~~------------l~s~L~~L~Ls~N-~L~~L--P~~---l~~sL~~L~Ls~N-~Lt~LP~~-------------l 302 (754)
T PRK15370 255 ELPER------------LPSALQSLDLFHN-KISCL--PEN---LPEELRYLSVYDN-SIRTLPAH-------------L 302 (754)
T ss_pred cCChh------------HhCCCCEEECcCC-ccCcc--ccc---cCCCCcEEECCCC-ccccCccc-------------c
Confidence 65432 1357899999754 56665 322 2358999999887 67766532 1
Q ss_pred ccccCCceEEEec-ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCC
Q 040122 199 QKLKSEENLLVAN-QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLEN 277 (388)
Q Consensus 199 ~~l~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~ 277 (388)
.++|+.|++++ ....++..+ +++|+.|+++++ .++.++. ..+++|+.|++++|. +..+|..+ .++
T Consensus 303 --p~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N-~Lt~LP~------~l~~sL~~L~Ls~N~-L~~LP~~l--p~~ 368 (754)
T PRK15370 303 --PSGITHLNVQSNSLTALPETL--PPGLKTLEAGEN-ALTSLPA------SLPPELQVLDVSKNQ-ITVLPETL--PPT 368 (754)
T ss_pred --hhhHHHHHhcCCccccCCccc--cccceeccccCC-ccccCCh------hhcCcccEEECCCCC-CCcCChhh--cCC
Confidence 23567777766 333333322 367888888775 4555553 224678888888874 44555433 357
Q ss_pred CCEEeeccCcCcccccchhhhcCccccceeeEccccccchhhcccccccCCccccccccceEecccCC
Q 040122 278 LEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLP 345 (388)
Q Consensus 278 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 345 (388)
|+.|++++| .+..++.. +. ..|+.|++++|. +..++. .+... ...++.+..|.+.+++
T Consensus 369 L~~LdLs~N-~Lt~LP~~-l~---~sL~~LdLs~N~-L~~LP~---sl~~~-~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 369 ITTLDVSRN-ALTNLPEN-LP---AALQIMQASRNN-LVRLPE---SLPHF-RGEGPQPTRIIVEYNP 426 (754)
T ss_pred cCEEECCCC-cCCCCCHh-HH---HHHHHHhhccCC-cccCch---hHHHH-hhcCCCccEEEeeCCC
Confidence 888888876 45555432 11 357777887764 334432 11100 0223566777776654
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.95 E-value=2.6e-11 Score=96.58 Aligned_cols=159 Identities=21% Similarity=0.282 Sum_probs=83.5
Q ss_pred cCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccC
Q 040122 77 FNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCN 156 (388)
Q Consensus 77 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 156 (388)
+.++..|.++++ +++..+|. +..+.+|+.|++++ +.++++|.. ..++++|+.|++. +..+..+
T Consensus 32 ~s~ITrLtLSHN-Kl~~vppn--ia~l~nlevln~~n-nqie~lp~~----------issl~klr~lnvg-mnrl~~l-- 94 (264)
T KOG0617|consen 32 MSNITRLTLSHN-KLTVVPPN--IAELKNLEVLNLSN-NQIEELPTS----------ISSLPKLRILNVG-MNRLNIL-- 94 (264)
T ss_pred hhhhhhhhcccC-ceeecCCc--HHHhhhhhhhhccc-chhhhcChh----------hhhchhhhheecc-hhhhhcC--
Confidence 455566666666 55554443 66666777777766 445555443 3556666666664 3344444
Q ss_pred CCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEec-ccccccccccCCCCcceEEecCCC
Q 040122 157 FTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVAN-QIQHLFDEKVAFPQLGNLRLSGLH 235 (388)
Q Consensus 157 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~~ 235 (388)
+.+ ++.+|.|+.|++.+. ++..-..... +-.++.|+-|++++ .+..++...+.+++|+.|.+++ +
T Consensus 95 prg-fgs~p~levldltyn-nl~e~~lpgn-----------ff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-n 160 (264)
T KOG0617|consen 95 PRG-FGSFPALEVLDLTYN-NLNENSLPGN-----------FFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-N 160 (264)
T ss_pred ccc-cCCCchhhhhhcccc-ccccccCCcc-----------hhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-C
Confidence 334 556777777777664 3332211110 33444455555555 4444555555666666666655 3
Q ss_pred CcceecccCchhHhhhccccEEEEecCCCcccccCC
Q 040122 236 KVQHLWKENDESNKAFANLERLEISECSKLQKLVPP 271 (388)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~ 271 (388)
++-.+|.+. +.++.|++|.|.++ .++.+|+.
T Consensus 161 dll~lpkei----g~lt~lrelhiqgn-rl~vlppe 191 (264)
T KOG0617|consen 161 DLLSLPKEI----GDLTRLRELHIQGN-RLTVLPPE 191 (264)
T ss_pred chhhCcHHH----HHHHHHHHHhcccc-eeeecChh
Confidence 344444332 45555555555554 23344433
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.89 E-value=2.2e-09 Score=109.81 Aligned_cols=151 Identities=23% Similarity=0.328 Sum_probs=76.0
Q ss_pred ccccccCCCCcceEEecCCCCccee--cccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccCcCccccc
Q 040122 216 LFDEKVAFPQLGNLRLSGLHKVQHL--WKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVL 293 (388)
Q Consensus 216 ~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 293 (388)
.+..++.+.+|+.|.+.+|...+.. +.........++++.++.+..|...... ......++|+.|.+.+|+.+.+..
T Consensus 709 ~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l-~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 709 LISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDL-TWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred eecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccccc-chhhccCcccEEEEecccccccCC
Confidence 3455567788888888887654321 1111100012456666666777655543 233456788888888888777764
Q ss_pred chhhhcCccccceeeEccccccchh--hcccccccCC--ccccccccceEecccCCCcceecCCCccccCCCcceEEecc
Q 040122 294 TLSASKNLVNLGRMMIADCKMIEQI--IQLQVGEEAK--DCNVFKELEYLGLDCLPSLTSFCLGNYALEFPSLKQVVVRQ 369 (388)
Q Consensus 294 ~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 369 (388)
... +.+..+..+.+..+. .... .....+...+ ....++.|..+.+..||++.. +|.+.++.+.+
T Consensus 788 ~~~--k~~~~l~~~i~~f~~-~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~---------~P~~~~~~i~~ 855 (889)
T KOG4658|consen 788 PKL--KALLELKELILPFNK-LEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGK---------LPLLSTLTIVG 855 (889)
T ss_pred CHH--HHhhhcccEEecccc-cccceeeecCCCCceeEecccCccchhheehhcCccccc---------Cccccccceec
Confidence 321 223333332222211 1111 0000011000 001223455555555555443 46777777888
Q ss_pred C-CCcccccCC
Q 040122 370 C-PKMKIFSQG 379 (388)
Q Consensus 370 c-~~l~~lp~~ 379 (388)
| +++...|.+
T Consensus 856 ~~~~~~~~~~~ 866 (889)
T KOG4658|consen 856 CEEKLKEYPDG 866 (889)
T ss_pred cccceeecCCc
Confidence 6 777777765
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.87 E-value=2.5e-10 Score=105.31 Aligned_cols=116 Identities=21% Similarity=0.086 Sum_probs=50.8
Q ss_pred CCcceEEecCccccceecccc-ccCccccCCccEEEecCCCCCcccCC-----hhhhhcCCCCcEEEeccccccceeccc
Q 040122 50 LDINRLQLSHFPRLQEIWHGQ-ALPVRFFNNLAELVVDDSTNMSSAIP-----ANLLRCLNNLEWLAVRNCDSLEEVLHL 123 (388)
Q Consensus 50 ~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~-----~~~~~~l~~L~~L~l~~~~~l~~i~~~ 123 (388)
.+|++++++++. +....... .-.....+++++++++++. +...+. ...+..+++|++|++++|......+..
T Consensus 23 ~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 23 LCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred hhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 447777777665 42110000 0001345567777776653 221000 012455667777777775432211110
Q ss_pred -ccccccccccCCcCccccEeecccCcccc-cccCCCCccccC-CCcceEeEecC
Q 040122 124 -EELSAKEEHIGPLFPRLLSLKLIDLPKLK-RFCNFTGNIIEL-PKLEYLIIENC 175 (388)
Q Consensus 124 -~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~l-~~L~~L~l~~c 175 (388)
..+ ... ++|++|+++++.... ........+..+ ++|++|++.+|
T Consensus 101 ~~~l-------~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n 147 (319)
T cd00116 101 LESL-------LRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN 147 (319)
T ss_pred HHHH-------hcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCC
Confidence 000 112 447777776653211 000000112344 66777777776
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.86 E-value=4.9e-10 Score=103.35 Aligned_cols=245 Identities=19% Similarity=0.114 Sum_probs=126.2
Q ss_pred ccCCccEEEecCCCCCcccC---ChhhhhcCCCCcEEEeccccccceecc-cccccccccccCCcCccccEeecccCccc
Q 040122 76 FFNNLAELVVDDSTNMSSAI---PANLLRCLNNLEWLAVRNCDSLEEVLH-LEELSAKEEHIGPLFPRLLSLKLIDLPKL 151 (388)
Q Consensus 76 ~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 151 (388)
.+.+|+.|++++| .++... -...+...++|++++++++.. ...+. ..... .....+++|+.|+++++...
T Consensus 21 ~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~-~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 21 KLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNET-GRIPRGLQSLL----QGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred HHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEecccccc-CCcchHHHHHH----HHHHhcCceeEEEccCCCCC
Confidence 4677999999988 443211 111256778899999988543 21111 00000 00234779999999887543
Q ss_pred ccccCCCCccccC---CCcceEeEecCCCcccccCCcceeeecccCCCccccc-cCCceEEEec-cc-----cccccccc
Q 040122 152 KRFCNFTGNIIEL---PKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKL-KSEENLLVAN-QI-----QHLFDEKV 221 (388)
Q Consensus 152 ~~~~~~~~~~~~l---~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l-~~L~~L~l~~-~~-----~~~~~~~~ 221 (388)
.... ..+..+ ++|++|++.+|. ++....... ...+..+ ++|+.|++++ .. ..+...+.
T Consensus 95 ~~~~---~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l--------~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 95 PDGC---GVLESLLRSSSLQELKLNNNG-LGDRGLRLL--------AKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred hhHH---HHHHHHhccCcccEEEeeCCc-cchHHHHHH--------HHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 2221 112222 559999999874 432111100 0013445 7788888876 11 12333344
Q ss_pred CCCCcceEEecCCCCcceecccCc-hhHhhhccccEEEEecCCCc----ccccCCccccCCCCEEeeccCcCcccccchh
Q 040122 222 AFPQLGNLRLSGLHKVQHLWKEND-ESNKAFANLERLEISECSKL----QKLVPPSWHLENLEALKVSKCHELINVLTLS 296 (388)
Q Consensus 222 ~~~~L~~L~l~~~~~l~~~~~~~~-~~~~~~~~L~~L~i~~~~~~----~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 296 (388)
.+++|+.|+++++. ++....... ......++|+.|++++|..- ..+...+..+++|++|++++| .+.+.....
T Consensus 163 ~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~ 240 (319)
T cd00116 163 ANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAA 240 (319)
T ss_pred hCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHH
Confidence 55678888887753 332110000 01123357888888877532 122333455677888888876 344432222
Q ss_pred hhcC----ccccceeeEccccccchhh-cccccccCCccccccccceEecccCC
Q 040122 297 ASKN----LVNLGRMMIADCKMIEQII-QLQVGEEAKDCNVFKELEYLGLDCLP 345 (388)
Q Consensus 297 ~~~~----l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~ 345 (388)
+... .+.|++|++++|.....-. .... ....+++|++++++++.
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~-----~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAE-----VLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHH-----HHhcCCCccEEECCCCC
Confidence 2222 3678888887774321000 0000 01233677777777753
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.85 E-value=8.6e-11 Score=93.65 Aligned_cols=161 Identities=22% Similarity=0.225 Sum_probs=116.9
Q ss_pred cCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccc
Q 040122 47 IGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEEL 126 (388)
Q Consensus 47 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~ 126 (388)
....+.+.|.++... ++.++... ..+.+|+.|++.++ ++.++|.. ++.+++|++|+++- +.+..+|..
T Consensus 30 f~~s~ITrLtLSHNK-l~~vppni----a~l~nlevln~~nn-qie~lp~~--issl~klr~lnvgm-nrl~~lprg--- 97 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNK-LTVVPPNI----AELKNLEVLNLSNN-QIEELPTS--ISSLPKLRILNVGM-NRLNILPRG--- 97 (264)
T ss_pred cchhhhhhhhcccCc-eeecCCcH----HHhhhhhhhhcccc-hhhhcChh--hhhchhhhheecch-hhhhcCccc---
Confidence 345777888887654 77666666 67888899988877 67775544 78889999998875 344444443
Q ss_pred cccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCce
Q 040122 127 SAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEEN 206 (388)
Q Consensus 127 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~ 206 (388)
+++++-|+.|++.... +.+-..+.. ++.+..|+.|.+.+. .++.+|++ ++.+++|+.
T Consensus 98 -------fgs~p~levldltynn-l~e~~lpgn-ff~m~tlralyl~dn-dfe~lp~d-------------vg~lt~lqi 154 (264)
T KOG0617|consen 98 -------FGSFPALEVLDLTYNN-LNENSLPGN-FFYMTTLRALYLGDN-DFEILPPD-------------VGKLTNLQI 154 (264)
T ss_pred -------cCCCchhhhhhccccc-cccccCCcc-hhHHHHHHHHHhcCC-CcccCChh-------------hhhhcceeE
Confidence 4778888888887653 333222333 666777888888874 67777776 788888998
Q ss_pred EEEec-ccccccccccCCCCcceEEecCCCCcceeccc
Q 040122 207 LLVAN-QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKE 243 (388)
Q Consensus 207 L~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 243 (388)
|.+.+ ..-.++.+++.++.|++|+|.+ +.++-+|++
T Consensus 155 l~lrdndll~lpkeig~lt~lrelhiqg-nrl~vlppe 191 (264)
T KOG0617|consen 155 LSLRDNDLLSLPKEIGDLTRLRELHIQG-NRLTVLPPE 191 (264)
T ss_pred EeeccCchhhCcHHHHHHHHHHHHhccc-ceeeecChh
Confidence 88887 6677888889999999999988 567777754
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=8.9e-10 Score=100.02 Aligned_cols=211 Identities=17% Similarity=0.162 Sum_probs=122.2
Q ss_pred cccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccc
Q 040122 75 RFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRF 154 (388)
Q Consensus 75 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 154 (388)
.++.+|+.+.|+++ .+..+........|++++.||++++ .+.+......+ ...+++|+.|+++.+.....+
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i-------~eqLp~Le~LNls~Nrl~~~~ 188 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKI-------AEQLPSLENLNLSSNRLSNFI 188 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhh-hHHhHHHHHHH-------HHhcccchhcccccccccCCc
Confidence 56888888888887 4444332235788999999999985 22222111111 356889999999875332222
Q ss_pred cCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEeccccccc--ccccCCCCcceEEec
Q 040122 155 CNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVANQIQHLF--DEKVAFPQLGNLRLS 232 (388)
Q Consensus 155 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~ 232 (388)
.......+++|+.|.+++| +++.-....+ +..+|+|+.|++.++..... ....-+..|+.|+|+
T Consensus 189 --~s~~~~~l~~lK~L~l~~C-Gls~k~V~~~-----------~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs 254 (505)
T KOG3207|consen 189 --SSNTTLLLSHLKQLVLNSC-GLSWKDVQWI-----------LLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLS 254 (505)
T ss_pred --cccchhhhhhhheEEeccC-CCCHHHHHHH-----------HHhCCcHHHhhhhcccccceecchhhhhhHHhhcccc
Confidence 1121346888999999998 5665444444 56788888888776321111 112235677888887
Q ss_pred CCCCcceecccCchhHhhhccccEEEEecCCCccc-ccCC-----ccccCCCCEEeeccCcCcccccchhhhcCccccce
Q 040122 233 GLHKVQHLWKENDESNKAFANLERLEISECSKLQK-LVPP-----SWHLENLEALKVSKCHELINVLTLSASKNLVNLGR 306 (388)
Q Consensus 233 ~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~-~~~~-----~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~ 306 (388)
+.+ +.+.+.. .....++.|..|.++.|...+- .|+. ...+++|++|++... .+.+.+.......+++|+.
T Consensus 255 ~N~-li~~~~~--~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~ 330 (505)
T KOG3207|consen 255 NNN-LIDFDQG--YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKH 330 (505)
T ss_pred CCc-ccccccc--cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchhhh
Confidence 744 3333211 1126777788888777643221 1221 346778888888764 4444433333344555666
Q ss_pred eeEccc
Q 040122 307 MMIADC 312 (388)
Q Consensus 307 L~l~~~ 312 (388)
|.+..+
T Consensus 331 l~~~~n 336 (505)
T KOG3207|consen 331 LRITLN 336 (505)
T ss_pred hhcccc
Confidence 655433
No 26
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.3e-09 Score=94.37 Aligned_cols=164 Identities=18% Similarity=0.099 Sum_probs=109.0
Q ss_pred cccccCCceEEEec--ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCc-cc
Q 040122 198 PQKLKSEENLLVAN--QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPS-WH 274 (388)
Q Consensus 198 l~~l~~L~~L~l~~--~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~-~~ 274 (388)
+..|..|+.|.+.+ -.+.+...+..-.+|+.|+++.|++++...... +...|+.|+.|+++.|...++....+ .+
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~l--l~~scs~L~~LNlsWc~l~~~~Vtv~V~h 283 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQL--LLSSCSRLDELNLSWCFLFTEKVTVAVAH 283 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHH--HHHhhhhHhhcCchHhhccchhhhHHHhh
Confidence 56777788887777 334444555666789999999998887654322 23788999999999997766542211 22
Q ss_pred -cCCCCEEeeccCcC-cccccchhhhcCccccceeeEccccccchhhcccccccCCccccccccceEecccCCCcceecC
Q 040122 275 -LENLEALKVSKCHE-LINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTSFCL 352 (388)
Q Consensus 275 -~~~L~~L~l~~c~~-l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 352 (388)
-++|+.|+++||.+ +...-.......+|+|.+||+++|..+..-..+ ....|+.|++|.++.|=.+- +.
T Consensus 284 ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~-------~~~kf~~L~~lSlsRCY~i~--p~ 354 (419)
T KOG2120|consen 284 ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-------EFFKFNYLQHLSLSRCYDII--PE 354 (419)
T ss_pred hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH-------HHHhcchheeeehhhhcCCC--hH
Confidence 25889999999863 222222335678999999999998776642220 22457899999999884320 11
Q ss_pred CC-ccccCCCcceEEeccCCC
Q 040122 353 GN-YALEFPSLKQVVVRQCPK 372 (388)
Q Consensus 353 ~~-~~~~~~~L~~L~l~~c~~ 372 (388)
.. .....|+|.+|++.+|-.
T Consensus 355 ~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 355 TLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred HeeeeccCcceEEEEeccccC
Confidence 00 112368999999998754
No 27
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=3.2e-09 Score=92.00 Aligned_cols=161 Identities=17% Similarity=0.196 Sum_probs=93.7
Q ss_pred CCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEec--
Q 040122 134 GPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVAN-- 211 (388)
Q Consensus 134 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~-- 211 (388)
+..|++|+.|.+.+...-+.++ ..+++-.+|+.|+++.|.+++....... +..|+.|..|+++-
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~---~~iAkN~~L~~lnlsm~sG~t~n~~~ll-----------~~scs~L~~LNlsWc~ 271 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIV---NTIAKNSNLVRLNLSMCSGFTENALQLL-----------LSSCSRLDELNLSWCF 271 (419)
T ss_pred HHHHHhhhhccccccccCcHHH---HHHhccccceeeccccccccchhHHHHH-----------HHhhhhHhhcCchHhh
Confidence 3557777777777764333331 1255677788888888877777665554 66777777777765
Q ss_pred -ccccc---cccccCCCCcceEEecCCCC-cceecccCchhHhhhccccEEEEecCCCccc-ccCCccccCCCCEEeecc
Q 040122 212 -QIQHL---FDEKVAFPQLGNLRLSGLHK-VQHLWKENDESNKAFANLERLEISECSKLQK-LVPPSWHLENLEALKVSK 285 (388)
Q Consensus 212 -~~~~~---~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~-~~~~~~~~~~L~~L~l~~ 285 (388)
....+ ...+ -++|+.|++++|.+ +..-..+ .....+++|..|++++|..+.. ....+..++.|++|.++.
T Consensus 272 l~~~~Vtv~V~hi--se~l~~LNlsG~rrnl~~sh~~--tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsR 347 (419)
T KOG2120|consen 272 LFTEKVTVAVAHI--SETLTQLNLSGYRRNLQKSHLS--TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSR 347 (419)
T ss_pred ccchhhhHHHhhh--chhhhhhhhhhhHhhhhhhHHH--HHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhh
Confidence 11111 1111 25677777777643 2111111 1125677888888887766553 223455677888888887
Q ss_pred CcCcccccchhhhcCccccceeeEcccc
Q 040122 286 CHELINVLTLSASKNLVNLGRMMIADCK 313 (388)
Q Consensus 286 c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 313 (388)
|..+.--... -...-|+|.+|++.+|-
T Consensus 348 CY~i~p~~~~-~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 348 CYDIIPETLL-ELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hcCCChHHee-eeccCcceEEEEecccc
Confidence 7654321111 12455778888877763
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=3.7e-08 Score=89.73 Aligned_cols=186 Identities=18% Similarity=0.201 Sum_probs=104.8
Q ss_pred hcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCccc
Q 040122 101 RCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMET 180 (388)
Q Consensus 101 ~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 180 (388)
+++.+|+.+.+.++. +..++..+ +...|++++.|+++.. .+..|.....-...+|+|+.|.++.. ++..
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~--------~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~N-rl~~ 186 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEE--------YSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSN-RLSN 186 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhh--------hhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccc-cccC
Confidence 467778888888752 33332111 1366888888988864 23333211121347888888888885 4443
Q ss_pred ccCCcceeeecccCCCccccccCCceEEEec---ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEE
Q 040122 181 FTSNSTFVLHMTADNKEPQKLKSEENLLVAN---QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERL 257 (388)
Q Consensus 181 ~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~---~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L 257 (388)
+..... -..+++|+.|.++. +...+......||+|+.|++.....+...... ...++.|++|
T Consensus 187 ~~~s~~-----------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~----~~i~~~L~~L 251 (505)
T KOG3207|consen 187 FISSNT-----------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS----TKILQTLQEL 251 (505)
T ss_pred Cccccc-----------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch----hhhhhHHhhc
Confidence 333322 33567777777776 44445555556777777777664322111111 1445667777
Q ss_pred EEecCCCcccc-cCCccccCCCCEEeeccCcCcccccchhh-----hcCccccceeeEcccc
Q 040122 258 EISECSKLQKL-VPPSWHLENLEALKVSKCHELINVLTLSA-----SKNLVNLGRMMIADCK 313 (388)
Q Consensus 258 ~i~~~~~~~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-----~~~l~~L~~L~l~~~~ 313 (388)
+++++..+..- ....+.++.|..|+++.| ++.++..... ...+++|++|.+..++
T Consensus 252 dLs~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 252 DLSNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred cccCCcccccccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCc
Confidence 77776544321 134566777777777665 3444322211 2456777777777664
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.35 E-value=1.7e-08 Score=90.83 Aligned_cols=256 Identities=20% Similarity=0.181 Sum_probs=128.8
Q ss_pred cCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccC
Q 040122 77 FNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCN 156 (388)
Q Consensus 77 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 156 (388)
.+.-..|+|..| +++.+|+ ..++.+++||.||++. +.++.|.+-. +..+.+|-.|-+.+..+++++
T Consensus 66 P~~tveirLdqN-~I~~iP~-~aF~~l~~LRrLdLS~-N~Is~I~p~A---------F~GL~~l~~Lvlyg~NkI~~l-- 131 (498)
T KOG4237|consen 66 PPETVEIRLDQN-QISSIPP-GAFKTLHRLRRLDLSK-NNISFIAPDA---------FKGLASLLSLVLYGNNKITDL-- 131 (498)
T ss_pred CCcceEEEeccC-CcccCCh-hhccchhhhceecccc-cchhhcChHh---------hhhhHhhhHHHhhcCCchhhh--
Confidence 345667778776 6676444 4488888888888888 4556553321 345667777777776677777
Q ss_pred CCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEec-ccccccc-cccCCCCcceEEecCC
Q 040122 157 FTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVAN-QIQHLFD-EKVAFPQLGNLRLSGL 234 (388)
Q Consensus 157 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~-~~~~~~~-~~~~~~~L~~L~l~~~ 234 (388)
+...++.+.+|+.|.+.-+ ++.-..... +..++++..|.+.+ ....+.. .+..+.+++.+++...
T Consensus 132 ~k~~F~gL~slqrLllNan-~i~Cir~~a------------l~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 132 PKGAFGGLSSLQRLLLNAN-HINCIRQDA------------LRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred hhhHhhhHHHHHHHhcChh-hhcchhHHH------------HHHhhhcchhcccchhhhhhccccccchhccchHhhhcC
Confidence 5554666777776666543 222222221 55666666666666 2233322 3334555666655432
Q ss_pred CCcce--------e----cccC--chh----------------HhhhccccEE---EEecCCCccccc-CCccccCCCCE
Q 040122 235 HKVQH--------L----WKEN--DES----------------NKAFANLERL---EISECSKLQKLV-PPSWHLENLEA 280 (388)
Q Consensus 235 ~~l~~--------~----~~~~--~~~----------------~~~~~~L~~L---~i~~~~~~~~~~-~~~~~~~~L~~ 280 (388)
+.+.+ + +..- +.+ ......++.+ -.+.|.....-| .-+..+++|++
T Consensus 199 p~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~ 278 (498)
T KOG4237|consen 199 PFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRK 278 (498)
T ss_pred ccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceE
Confidence 21110 0 0000 000 0000000000 000110000000 12445677777
Q ss_pred EeeccCcCcccccchhhhcCccccceeeEccccccchhhcccccccCCccccccccceEecccCCCcceecCCCccccCC
Q 040122 281 LKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTSFCLGNYALEFP 360 (388)
Q Consensus 281 L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 360 (388)
|++++. +++.+... ....+.++++|++..+. ++.+.. ++ ...+..|+.|++.+. +++.+..+.. ....
T Consensus 279 lnlsnN-~i~~i~~~-aFe~~a~l~eL~L~~N~-l~~v~~---~~----f~~ls~L~tL~L~~N-~it~~~~~aF-~~~~ 346 (498)
T KOG4237|consen 279 LNLSNN-KITRIEDG-AFEGAAELQELYLTRNK-LEFVSS---GM----FQGLSGLKTLSLYDN-QITTVAPGAF-QTLF 346 (498)
T ss_pred eccCCC-ccchhhhh-hhcchhhhhhhhcCcch-HHHHHH---Hh----hhccccceeeeecCC-eeEEEecccc-cccc
Confidence 777764 55555433 23556777777776653 333322 11 133467777888774 4555544431 1245
Q ss_pred CcceEEeccCC
Q 040122 361 SLKQVVVRQCP 371 (388)
Q Consensus 361 ~L~~L~l~~c~ 371 (388)
+|.+|.+..+|
T Consensus 347 ~l~~l~l~~Np 357 (498)
T KOG4237|consen 347 SLSTLNLLSNP 357 (498)
T ss_pred eeeeeehccCc
Confidence 77777775543
No 30
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.32 E-value=2.7e-08 Score=97.05 Aligned_cols=12 Identities=25% Similarity=0.841 Sum_probs=6.8
Q ss_pred cceeeEcccccc
Q 040122 304 LGRMMIADCKMI 315 (388)
Q Consensus 304 L~~L~l~~~~~~ 315 (388)
++.|.+..|...
T Consensus 403 l~~L~l~~~~~~ 414 (482)
T KOG1947|consen 403 LRVLNLSDCRLV 414 (482)
T ss_pred cceEecccCccc
Confidence 566666655543
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.30 E-value=2.3e-07 Score=76.61 Aligned_cols=107 Identities=21% Similarity=0.268 Sum_probs=31.0
Q ss_pred CCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccc
Q 040122 49 FLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSA 128 (388)
Q Consensus 49 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~ 128 (388)
...+++|++.++. +..+..-. ..+.+|+.|++++| .++.+.. +..+++|++|++++| .+..+... +
T Consensus 18 ~~~~~~L~L~~n~-I~~Ie~L~----~~l~~L~~L~Ls~N-~I~~l~~---l~~L~~L~~L~L~~N-~I~~i~~~--l-- 83 (175)
T PF14580_consen 18 PVKLRELNLRGNQ-ISTIENLG----ATLDKLEVLDLSNN-QITKLEG---LPGLPRLKTLDLSNN-RISSISEG--L-- 83 (175)
T ss_dssp -------------------S------TT-TT--EEE-TTS---S--TT-------TT--EEE--SS----S-CHH--H--
T ss_pred ccccccccccccc-cccccchh----hhhcCCCEEECCCC-CCccccC---ccChhhhhhcccCCC-CCCccccc--h--
Confidence 3457777777665 55332111 24677888888777 5666443 567777888888774 44444211 0
Q ss_pred cccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCC
Q 040122 129 KEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCP 176 (388)
Q Consensus 129 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 176 (388)
...+++|+.|++.++ ++.++..... +..+|+|+.|++.++|
T Consensus 84 -----~~~lp~L~~L~L~~N-~I~~l~~l~~-L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 84 -----DKNLPNLQELYLSNN-KISDLNELEP-LSSLPKLRVLSLEGNP 124 (175)
T ss_dssp -----HHH-TT--EEE-TTS----SCCCCGG-GGG-TT--EEE-TT-G
T ss_pred -----HHhCCcCCEEECcCC-cCCChHHhHH-HHcCCCcceeeccCCc
Confidence 124677788887654 3444322222 5567777777777764
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.20 E-value=1.3e-06 Score=72.24 Aligned_cols=129 Identities=22% Similarity=0.193 Sum_probs=50.6
Q ss_pred cceeeecCCCCchhHHHHhhhcc-CCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcC
Q 040122 25 GELHHWEGNNLNSTIQKCYDEKI-GFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCL 103 (388)
Q Consensus 25 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 103 (388)
..+++..| ..+..+ ..+. .+.+|+.|+++++. ++.+. +. ..+++|++|++++| .++.+ +..+...+
T Consensus 21 ~~~L~L~~----n~I~~I-e~L~~~l~~L~~L~Ls~N~-I~~l~-~l----~~L~~L~~L~L~~N-~I~~i-~~~l~~~l 87 (175)
T PF14580_consen 21 LRELNLRG----NQISTI-ENLGATLDKLEVLDLSNNQ-ITKLE-GL----PGLPRLKTLDLSNN-RISSI-SEGLDKNL 87 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S--T-T--------TT--EEE--SS----S--CHHHHHH-
T ss_pred cccccccc----cccccc-cchhhhhcCCCEEECCCCC-Ccccc-Cc----cChhhhhhcccCCC-CCCcc-ccchHHhC
Confidence 45566666 333333 2233 46889999999876 66443 22 45899999999998 67764 33334579
Q ss_pred CCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecC
Q 040122 104 NNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENC 175 (388)
Q Consensus 104 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 175 (388)
++|++|++++| .+..+.++.. ...+++|+.|++.++|-...-..-...+..+|+|+.||-...
T Consensus 88 p~L~~L~L~~N-~I~~l~~l~~--------L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 88 PNLQELYLSNN-KISDLNELEP--------LSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp TT--EEE-TTS----SCCCCGG--------GGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CcCCEEECcCC-cCCChHHhHH--------HHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 99999999984 5555544433 367999999999987643221001112567899998876554
No 33
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.20 E-value=8.1e-08 Score=86.49 Aligned_cols=78 Identities=14% Similarity=0.213 Sum_probs=56.9
Q ss_pred hhHHHHhhhccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccc
Q 040122 37 STIQKCYDEKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDS 116 (388)
Q Consensus 37 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 116 (388)
..++++|..+. +.-..+.+..+. |+.++.+. . ..+++|+.|+|++| ++..+-|.. +.++++|..|-+.+++.
T Consensus 56 ~GL~eVP~~LP--~~tveirLdqN~-I~~iP~~a-F--~~l~~LRrLdLS~N-~Is~I~p~A-F~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 56 KGLTEVPANLP--PETVEIRLDQNQ-ISSIPPGA-F--KTLHRLRRLDLSKN-NISFIAPDA-FKGLASLLSLVLYGNNK 127 (498)
T ss_pred CCcccCcccCC--CcceEEEeccCC-cccCChhh-c--cchhhhceeccccc-chhhcChHh-hhhhHhhhHHHhhcCCc
Confidence 34566776653 556677776554 77777666 2 46889999999988 677655554 88999999998988888
Q ss_pred cceecc
Q 040122 117 LEEVLH 122 (388)
Q Consensus 117 l~~i~~ 122 (388)
+..++.
T Consensus 128 I~~l~k 133 (498)
T KOG4237|consen 128 ITDLPK 133 (498)
T ss_pred hhhhhh
Confidence 888765
No 34
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.15 E-value=1.8e-05 Score=73.63 Aligned_cols=60 Identities=20% Similarity=0.310 Sum_probs=32.7
Q ss_pred cCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccc
Q 040122 77 FNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRF 154 (388)
Q Consensus 77 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 154 (388)
+.++..|++++| .++.+|. + -.+|++|.+++|..+..+|+. ..++|++|.+.+|..+..+
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~---L--P~sLtsL~Lsnc~nLtsLP~~------------LP~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV---L--PNELTEITIENCNNLTTLPGS------------IPEGLEKLTVCHCPEISGL 110 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC---C--CCCCcEEEccCCCCcccCCch------------hhhhhhheEccCccccccc
Confidence 566666666666 5555331 1 134666666666665555431 1246666666666544433
No 35
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.09 E-value=2e-07 Score=90.98 Aligned_cols=244 Identities=18% Similarity=0.182 Sum_probs=128.2
Q ss_pred CCCcceEEecCccccceeccccccCccccCCccEEEecCC-CCCcccC--ChhhhhcCCCCcEEEeccccccceeccccc
Q 040122 49 FLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDS-TNMSSAI--PANLLRCLNNLEWLAVRNCDSLEEVLHLEE 125 (388)
Q Consensus 49 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~-~~l~~~~--~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~ 125 (388)
.++|+.+.+.+|..+...+... ....+++|+.|++.+| ......+ .......+++|++|++++|..+.... +..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~-l~~ 263 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDA--LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG-LSA 263 (482)
T ss_pred CchhhHhhhcccccCChhhHHH--HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh-HHH
Confidence 6889999999998887644222 1156899999999873 2222211 12235677899999999987544421 111
Q ss_pred ccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCc
Q 040122 126 LSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEE 205 (388)
Q Consensus 126 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~ 205 (388)
+ ...+++|+.|.+.+|..+++-..... ...+++|++|++++|..++....... ..++++++
T Consensus 264 l-------~~~c~~L~~L~l~~c~~lt~~gl~~i-~~~~~~L~~L~l~~c~~~~d~~l~~~-----------~~~c~~l~ 324 (482)
T KOG1947|consen 264 L-------ASRCPNLETLSLSNCSNLTDEGLVSI-AERCPSLRELDLSGCHGLTDSGLEAL-----------LKNCPNLR 324 (482)
T ss_pred H-------HhhCCCcceEccCCCCccchhHHHHH-HHhcCcccEEeeecCccchHHHHHHH-----------HHhCcchh
Confidence 1 23488999999888876544311111 34689999999999987744332222 33455555
Q ss_pred eEEEecccc-------cccccccCC-CCcceEEecCCCCcceecccCchhHhhhcccc-EEEEecCCCc-ccccCCcccc
Q 040122 206 NLLVANQIQ-------HLFDEKVAF-PQLGNLRLSGLHKVQHLWKENDESNKAFANLE-RLEISECSKL-QKLVPPSWHL 275 (388)
Q Consensus 206 ~L~l~~~~~-------~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~-~L~i~~~~~~-~~~~~~~~~~ 275 (388)
.+.+..... .+....... ..+..+.+..|++++....... . ..... .+.+.+|+.+ ..+.......
T Consensus 325 ~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~---~-~~~~~~~~~l~gc~~l~~~l~~~~~~~ 400 (482)
T KOG1947|consen 325 ELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYC---G-ISDLGLELSLRGCPNLTESLELRLCRS 400 (482)
T ss_pred hhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhh---h-ccCcchHHHhcCCcccchHHHHHhccC
Confidence 554333100 000000000 1223333333333332211100 0 11111 2333445444 2221112223
Q ss_pred CCCCEEeeccCcCcccccchhhhcCccccceeeEccccccchh
Q 040122 276 ENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQI 318 (388)
Q Consensus 276 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 318 (388)
..++.|++..|...++.........+..+..+++.+|+.+...
T Consensus 401 ~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 401 DSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred CccceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 3378899998876665543332222667777888777665433
No 36
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.99 E-value=2.9e-05 Score=72.24 Aligned_cols=115 Identities=13% Similarity=0.213 Sum_probs=59.4
Q ss_pred CCcceEEecCCCCcceecccCchhHhhhccccEEEEecCC--CcccccCCccccCCCCEEeeccCcCcccccchhhhcCc
Q 040122 224 PQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECS--KLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNL 301 (388)
Q Consensus 224 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~--~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l 301 (388)
++|+.|.+++|..+..+| +.|+.|++.++. .+..+| ++|+.|.+.++......... ..+
T Consensus 94 ~nLe~L~Ls~Cs~L~sLP----------~sLe~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp---~~L 154 (426)
T PRK15386 94 EGLEKLTVCHCPEISGLP----------ESVRSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARID---NLI 154 (426)
T ss_pred hhhhheEccCcccccccc----------cccceEEeCCCCCcccccCc------chHhheeccccccccccccc---ccc
Confidence 477788888776665544 446777765422 233333 36667776543211111000 112
Q ss_pred -cccceeeEccccccchhhcccccccCCccccccccceEecccCCCcc--eecCCCccccCCCcceEEeccCCCc
Q 040122 302 -VNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSLT--SFCLGNYALEFPSLKQVVVRQCPKM 373 (388)
Q Consensus 302 -~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~~~~~~L~~L~l~~c~~l 373 (388)
++|++|++.+|..+. .+. ....+|+.|.+..+. .. .++....+ +++ .|.+.+|-++
T Consensus 155 PsSLk~L~Is~c~~i~-LP~----------~LP~SLk~L~ls~n~-~~sLeI~~~sLP---~nl-~L~f~n~lkL 213 (426)
T PRK15386 155 SPSLKTLSLTGCSNII-LPE----------KLPESLQSITLHIEQ-KTTWNISFEGFP---DGL-DIDLQNSVLL 213 (426)
T ss_pred CCcccEEEecCCCccc-Ccc----------cccccCcEEEecccc-cccccCcccccc---ccc-Eechhhhccc
Confidence 578888888887542 111 122578888876542 11 12222211 345 7777777443
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.92 E-value=1.9e-05 Score=53.23 Aligned_cols=58 Identities=26% Similarity=0.303 Sum_probs=27.4
Q ss_pred CccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccC
Q 040122 79 NLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDL 148 (388)
Q Consensus 79 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 148 (388)
+|++|++++| +++.+++. .+.++++|++|++++ +.+..+++.. +..+++|++|+++++
T Consensus 2 ~L~~L~l~~n-~l~~i~~~-~f~~l~~L~~L~l~~-N~l~~i~~~~---------f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPD-SFSNLPNLETLDLSN-NNLTSIPPDA---------FSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTT-TTTTGTTESEEEETS-SSESEEETTT---------TTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHH-HHcCCCCCCEeEccC-CccCccCHHH---------HcCCCCCCEEeCcCC
Confidence 4555555555 44443322 255555555555554 2334433211 244555555555544
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.88 E-value=2.9e-05 Score=52.36 Aligned_cols=59 Identities=29% Similarity=0.383 Sum_probs=37.7
Q ss_pred CCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccc
Q 040122 50 LDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNC 114 (388)
Q Consensus 50 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 114 (388)
|+|++|+++++. +..++.+. . ..+++|++|++++| .++.+++. .+.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~-f--~~l~~L~~L~l~~N-~l~~i~~~-~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDS-F--SNLPNLETLDLSNN-NLTSIPPD-AFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSST-ESEECTTT-T--TTGTTESEEEETSS-SESEEETT-TTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCC-CCccCHHH-H--cCCCCCCEeEccCC-ccCccCHH-HHcCCCCCCEEeCcCC
Confidence 467777777663 66554433 2 35677777777766 56664443 3677777777777775
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.77 E-value=1.9e-06 Score=76.64 Aligned_cols=259 Identities=19% Similarity=0.135 Sum_probs=124.3
Q ss_pred hHHHHhhhccCCCCcceEEecCccccc-e--eccccccCccccCCccEEEecCC--CCCcccCChh------hhhcCCCC
Q 040122 38 TIQKCYDEKIGFLDINRLQLSHFPRLQ-E--IWHGQALPVRFFNNLAELVVDDS--TNMSSAIPAN------LLRCLNNL 106 (388)
Q Consensus 38 ~~~~l~~~~~~~~~L~~L~l~~~~~l~-~--~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~~------~~~~l~~L 106 (388)
..+.+.+..-.+..++++++++.. +. . .|.+. ...+-++|+..++++- ..+....|.. .+..+++|
T Consensus 18 d~~~v~~~~~~~~s~~~l~lsgnt-~G~EAa~~i~~--~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L 94 (382)
T KOG1909|consen 18 DEKDVEEELEPMDSLTKLDLSGNT-FGTEAARAIAK--VLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKL 94 (382)
T ss_pred hhhhHHHHhcccCceEEEeccCCc-hhHHHHHHHHH--HHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCce
Confidence 344555666778899999999865 33 1 11111 1134567777777653 1111112221 24567789
Q ss_pred cEEEecccccc-ceecccccccccccccCCcCccccEeecccCcccccccCC-----------CCccccCCCcceEeEec
Q 040122 107 EWLAVRNCDSL-EEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNF-----------TGNIIELPKLEYLIIEN 174 (388)
Q Consensus 107 ~~L~l~~~~~l-~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-----------~~~~~~l~~L~~L~l~~ 174 (388)
++|++|+|-.. +.++..+.+ +.++..|++|.+.+|. +...... ....+.-+.|+++...+
T Consensus 95 ~~ldLSDNA~G~~g~~~l~~l-------l~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 95 QKLDLSDNAFGPKGIRGLEEL-------LSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred eEeeccccccCccchHHHHHH-------HHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 99999986322 223222222 4668888888888873 2222000 01123445666666555
Q ss_pred CCCcccccCCcceeeecccCCCccccccCCceEEEecccccccccccCCCCcceEEecCCCCcceec-ccCchhHhhhcc
Q 040122 175 CPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVANQIQHLFDEKVAFPQLGNLRLSGLHKVQHLW-KENDESNKAFAN 253 (388)
Q Consensus 175 c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~~ 253 (388)
+ ++...+... +-..+...+.|+.+.+... .+..-. ......+.++++
T Consensus 167 N-rlen~ga~~------------------------------~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~ 214 (382)
T KOG1909|consen 167 N-RLENGGATA------------------------------LAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPH 214 (382)
T ss_pred c-ccccccHHH------------------------------HHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCc
Confidence 3 443333211 1111122345555555431 111100 011122355666
Q ss_pred ccEEEEecCCCcc----cccCCccccCCCCEEeeccCcCcccccch----hhhcCccccceeeEccccccchhhcccccc
Q 040122 254 LERLEISECSKLQ----KLVPPSWHLENLEALKVSKCHELINVLTL----SASKNLVNLGRMMIADCKMIEQIIQLQVGE 325 (388)
Q Consensus 254 L~~L~i~~~~~~~----~~~~~~~~~~~L~~L~l~~c~~l~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 325 (388)
|++|++.++..-. .+...+..+++|+.|++++| .+++-... .+-...|+|+.|.+.+|....+-.. .
T Consensus 215 LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~----~ 289 (382)
T KOG1909|consen 215 LEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL----A 289 (382)
T ss_pred ceeeecccchhhhHHHHHHHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH----H
Confidence 6666666654321 22334455667777777776 33332211 1223456777777777653322111 0
Q ss_pred cCCccccccccceEecccC
Q 040122 326 EAKDCNVFKELEYLGLDCL 344 (388)
Q Consensus 326 ~~~~~~~~~~L~~L~l~~~ 344 (388)
-+.....-|.|..|.+.+|
T Consensus 290 la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 290 LAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHHHhcchhhHHhcCCcc
Confidence 0001122356666666665
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.69 E-value=5.3e-06 Score=73.90 Aligned_cols=200 Identities=16% Similarity=0.103 Sum_probs=109.4
Q ss_pred ccCcceeeecCCCCc-hhHHHHhhhccCCCCcceEEecCccccc---eecc-----ccccCccccCCccEEEecCCCCCc
Q 040122 22 KEEGELHHWEGNNLN-STIQKCYDEKIGFLDINRLQLSHFPRLQ---EIWH-----GQALPVRFFNNLAELVVDDSTNMS 92 (388)
Q Consensus 22 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~l~---~~~~-----~~~~~~~~~~~L~~L~l~~~~~l~ 92 (388)
+....+++.+|+... ...+.+-..+...++|+..+++++..=. .++. +.++ -.+++|++|+|++|-...
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL--~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKAL--LGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHH--hcCCceeEeeccccccCc
Confidence 344567778885332 2345677777788899999999753111 1111 1101 236799999999985333
Q ss_pred ccCCh--hhhhcCCCCcEEEeccccccceecccc-ccccc---ccccCCcCccccEeecccCcccccccC--CCCccccC
Q 040122 93 SAIPA--NLLRCLNNLEWLAVRNCDSLEEVLHLE-ELSAK---EEHIGPLFPRLLSLKLIDLPKLKRFCN--FTGNIIEL 164 (388)
Q Consensus 93 ~~~~~--~~~~~l~~L~~L~l~~~~~l~~i~~~~-~~~~~---~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~l 164 (388)
..++. .++.++..|++|.+.+|.. +...... +-.+. ...-..+-++||.+...++. +.+... ....+..+
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGL-GPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQSH 184 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCC-ChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHHhc
Confidence 22221 1578899999999999742 2111100 00000 00113567888888887653 333200 01114457
Q ss_pred CCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEecc-c-----ccccccccCCCCcceEEecCC
Q 040122 165 PKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVANQ-I-----QHLFDEKVAFPQLGNLRLSGL 234 (388)
Q Consensus 165 ~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~~-~-----~~~~~~~~~~~~L~~L~l~~~ 234 (388)
+.|+.+.++.. .+..-..... ...+..+++|+.|++.++ + ..+...+..+++|+.+++++|
T Consensus 185 ~~leevr~~qN-~I~~eG~~al--------~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 185 PTLEEVRLSQN-GIRPEGVTAL--------AEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred cccceEEEecc-cccCchhHHH--------HHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 89999998875 3332221100 002567777777777761 1 122333445666667766666
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.60 E-value=7.7e-05 Score=70.96 Aligned_cols=177 Identities=25% Similarity=0.303 Sum_probs=97.0
Q ss_pred hhcCCCCcEEEeccccccceecccccccccccccCCcCc-cccEeecccCcccccccCCCCccccCCCcceEeEecCCCc
Q 040122 100 LRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFP-RLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDM 178 (388)
Q Consensus 100 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l 178 (388)
+..++.++.|++.+ ..+..+++.. .... +|+.|++++. .+..+. .. +..+++|+.|++.++ .+
T Consensus 112 ~~~~~~l~~L~l~~-n~i~~i~~~~----------~~~~~nL~~L~l~~N-~i~~l~--~~-~~~l~~L~~L~l~~N-~l 175 (394)
T COG4886 112 LLELTNLTSLDLDN-NNITDIPPLI----------GLLKSNLKELDLSDN-KIESLP--SP-LRNLPNLKNLDLSFN-DL 175 (394)
T ss_pred hhcccceeEEecCC-cccccCcccc----------ccchhhccccccccc-chhhhh--hh-hhccccccccccCCc-hh
Confidence 44456677777766 3455554431 2242 6777777654 234431 12 557777777777775 45
Q ss_pred ccccCCcceeeecccCCCccccccCCceEEEec-ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEE
Q 040122 179 ETFTSNSTFVLHMTADNKEPQKLKSEENLLVAN-QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERL 257 (388)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L 257 (388)
..++.. .+..++|+.|++++ ....++...+....|+++.+++...+.... . ...+.++..+
T Consensus 176 ~~l~~~-------------~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~-~----~~~~~~l~~l 237 (394)
T COG4886 176 SDLPKL-------------LSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLS-S----LSNLKNLSGL 237 (394)
T ss_pred hhhhhh-------------hhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecch-h----hhhccccccc
Confidence 555543 22566777777776 444444444444457777776642222211 1 1445555555
Q ss_pred EEecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEcccccc
Q 040122 258 EISECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMI 315 (388)
Q Consensus 258 ~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~ 315 (388)
.+.++. +..++.....++++++|+++++ .+.+++. ...+.+++.|+++++...
T Consensus 238 ~l~~n~-~~~~~~~~~~l~~l~~L~~s~n-~i~~i~~---~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 238 ELSNNK-LEDLPESIGNLSNLETLDLSNN-QISSISS---LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ccCCce-eeeccchhccccccceeccccc-ccccccc---ccccCccCEEeccCcccc
Confidence 544432 3333445566667777777764 4555433 356677777777765443
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.49 E-value=8.2e-05 Score=70.78 Aligned_cols=172 Identities=24% Similarity=0.300 Sum_probs=112.6
Q ss_pred ccCCccEEEecCCCCCcccCChhhhhcCC-CCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccc
Q 040122 76 FFNNLAELVVDDSTNMSSAIPANLLRCLN-NLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRF 154 (388)
Q Consensus 76 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~-~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 154 (388)
.++++..|++.++ .+..+++. ...+. +|+.|++++ +.+..++.. ...+++|+.|++++++ +..+
T Consensus 114 ~~~~l~~L~l~~n-~i~~i~~~--~~~~~~nL~~L~l~~-N~i~~l~~~----------~~~l~~L~~L~l~~N~-l~~l 178 (394)
T COG4886 114 ELTNLTSLDLDNN-NITDIPPL--IGLLKSNLKELDLSD-NKIESLPSP----------LRNLPNLKNLDLSFND-LSDL 178 (394)
T ss_pred cccceeEEecCCc-ccccCccc--cccchhhcccccccc-cchhhhhhh----------hhccccccccccCCch-hhhh
Confidence 3567888888776 66665554 34553 888998888 455555311 3668888888888763 5555
Q ss_pred cCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEecc-cccccccccCCCCcceEEecC
Q 040122 155 CNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVANQ-IQHLFDEKVAFPQLGNLRLSG 233 (388)
Q Consensus 155 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~ 233 (388)
+ .. .+..++|+.|++.+. .++.++.. +....+|+.+.++.+ ....+.....+.++..+.+.+
T Consensus 179 ~--~~-~~~~~~L~~L~ls~N-~i~~l~~~-------------~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~ 241 (394)
T COG4886 179 P--KL-LSNLSNLNNLDLSGN-KISDLPPE-------------IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN 241 (394)
T ss_pred h--hh-hhhhhhhhheeccCC-ccccCchh-------------hhhhhhhhhhhhcCCcceecchhhhhcccccccccCC
Confidence 2 11 237788888888885 67777654 334556888888775 556666666777777777554
Q ss_pred CCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccC
Q 040122 234 LHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKC 286 (388)
Q Consensus 234 ~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c 286 (388)
..+..++.. .+.++.++.|+++++. +..++. +....+++.|++++.
T Consensus 242 -n~~~~~~~~----~~~l~~l~~L~~s~n~-i~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 242 -NKLEDLPES----IGNLSNLETLDLSNNQ-ISSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred -ceeeeccch----hccccccceecccccc-cccccc-ccccCccCEEeccCc
Confidence 233332211 1666778888888864 444443 777788888888874
No 43
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.44 E-value=3.4e-05 Score=77.54 Aligned_cols=37 Identities=19% Similarity=0.133 Sum_probs=17.3
Q ss_pred cCccccEeecccCccc-ccccCCCCccccCCCcceEeEec
Q 040122 136 LFPRLLSLKLIDLPKL-KRFCNFTGNIIELPKLEYLIIEN 174 (388)
Q Consensus 136 ~~~~L~~L~l~~~~~l-~~~~~~~~~~~~l~~L~~L~l~~ 174 (388)
+-.+|++|++.+...+ ..| +..-...+|+|+.|.+.+
T Consensus 120 sr~nL~~LdI~G~~~~s~~W--~~kig~~LPsL~sL~i~~ 157 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGW--PKKIGTMLPSLRSLVISG 157 (699)
T ss_pred HHHhhhhcCccccchhhccH--HHHHhhhCcccceEEecC
Confidence 3556666666553222 111 111012466666666665
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.39 E-value=3.7e-05 Score=67.32 Aligned_cols=125 Identities=18% Similarity=0.227 Sum_probs=87.7
Q ss_pred CCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceeccccccccc
Q 040122 50 LDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAK 129 (388)
Q Consensus 50 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~ 129 (388)
..|++++++++. ++.+.... .-.|+++.|++++| .+...-. +..+++|++||++++ .+.++...
T Consensus 284 q~LtelDLS~N~-I~~iDESv----KL~Pkir~L~lS~N-~i~~v~n---La~L~~L~~LDLS~N-~Ls~~~Gw------ 347 (490)
T KOG1259|consen 284 QELTELDLSGNL-ITQIDESV----KLAPKLRRLILSQN-RIRTVQN---LAELPQLQLLDLSGN-LLAECVGW------ 347 (490)
T ss_pred hhhhhccccccc-hhhhhhhh----hhccceeEEecccc-ceeeehh---hhhcccceEeecccc-hhHhhhhh------
Confidence 568999998765 66444344 55799999999998 4554222 788999999999995 44433111
Q ss_pred ccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEE
Q 040122 130 EEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLV 209 (388)
Q Consensus 130 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l 209 (388)
-..+.+++.|.+..+ .++.+ +-++++-+|..|++.+. +++.+..-. +++++|.|+.+.+
T Consensus 348 ----h~KLGNIKtL~La~N-~iE~L----SGL~KLYSLvnLDl~~N-~Ie~ldeV~-----------~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 348 ----HLKLGNIKTLKLAQN-KIETL----SGLRKLYSLVNLDLSSN-QIEELDEVN-----------HIGNLPCLETLRL 406 (490)
T ss_pred ----HhhhcCEeeeehhhh-hHhhh----hhhHhhhhheecccccc-chhhHHHhc-----------ccccccHHHHHhh
Confidence 145788888888764 45555 22667888899999885 666654333 3888999999988
Q ss_pred ec
Q 040122 210 AN 211 (388)
Q Consensus 210 ~~ 211 (388)
.+
T Consensus 407 ~~ 408 (490)
T KOG1259|consen 407 TG 408 (490)
T ss_pred cC
Confidence 77
No 45
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.35 E-value=5.8e-05 Score=75.96 Aligned_cols=36 Identities=17% Similarity=0.363 Sum_probs=15.4
Q ss_pred CCcceEEecCccccceeccccccCccccCCccEEEecC
Q 040122 50 LDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDD 87 (388)
Q Consensus 50 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 87 (388)
.+|++|++++...+...|... .. .-+|+|++|.+.+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~k-ig-~~LPsL~sL~i~~ 157 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKK-IG-TMLPSLRSLVISG 157 (699)
T ss_pred HhhhhcCccccchhhccHHHH-Hh-hhCcccceEEecC
Confidence 445555555444333444322 11 2345555555543
No 46
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.26 E-value=7.8e-05 Score=65.36 Aligned_cols=40 Identities=25% Similarity=0.338 Sum_probs=22.4
Q ss_pred cccCCccEEEecCCCCC-------cccCChhhhhcCCCCcEEEecccc
Q 040122 75 RFFNNLAELVVDDSTNM-------SSAIPANLLRCLNNLEWLAVRNCD 115 (388)
Q Consensus 75 ~~~~~L~~L~l~~~~~l-------~~~~~~~~~~~l~~L~~L~l~~~~ 115 (388)
..+..|..|.+++...- .+..++. +.-+++|+.+.++.|.
T Consensus 179 df~~~l~~l~vs~~~~p~~~sni~~~~l~f~-l~~f~~l~~~~~s~~~ 225 (490)
T KOG1259|consen 179 DFCTQLVALVVTPVKDPIDRSNIIPNRLSFN-LNAFRNLKTLKFSALS 225 (490)
T ss_pred HhhhheeEEEecCCCCCCccccccccccccc-hHHhhhhheeeeeccc
Confidence 34667777777653211 1122222 4556778888888874
No 47
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.24 E-value=8.4e-06 Score=77.13 Aligned_cols=158 Identities=19% Similarity=0.146 Sum_probs=90.6
Q ss_pred hHHHHhhhccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEecccccc
Q 040122 38 TIQKCYDEKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSL 117 (388)
Q Consensus 38 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 117 (388)
...++|.+.+.|..|+.+.++.+- +..++... ..+..|.+|+++.+ .+...++. +..|+ |+.|-+++ +++
T Consensus 86 R~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i----~~L~~lt~l~ls~N-qlS~lp~~--lC~lp-Lkvli~sN-Nkl 155 (722)
T KOG0532|consen 86 RFSELPEEACAFVSLESLILYHNC-IRTIPEAI----CNLEALTFLDLSSN-QLSHLPDG--LCDLP-LKVLIVSN-NKL 155 (722)
T ss_pred ccccCchHHHHHHHHHHHHHHhcc-ceecchhh----hhhhHHHHhhhccc-hhhcCChh--hhcCc-ceeEEEec-Ccc
Confidence 345567777777777777776433 44444444 55677777777766 44543332 55555 77777776 455
Q ss_pred ceecccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCc
Q 040122 118 EEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKE 197 (388)
Q Consensus 118 ~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~ 197 (388)
+.+|... +....|..|+.+.|. +..+ +.. ++.+.+|+.|.+... ++..+|..
T Consensus 156 ~~lp~~i----------g~~~tl~~ld~s~ne-i~sl--psq-l~~l~slr~l~vrRn-~l~~lp~E------------- 207 (722)
T KOG0532|consen 156 TSLPEEI----------GLLPTLAHLDVSKNE-IQSL--PSQ-LGYLTSLRDLNVRRN-HLEDLPEE------------- 207 (722)
T ss_pred ccCCccc----------ccchhHHHhhhhhhh-hhhc--hHH-hhhHHHHHHHHHhhh-hhhhCCHH-------------
Confidence 5555542 346666677776553 3333 222 556666666666663 55555544
Q ss_pred cccccCCceEEEec-ccccccccccCCCCcceEEecCC
Q 040122 198 PQKLKSEENLLVAN-QIQHLFDEKVAFPQLGNLRLSGL 234 (388)
Q Consensus 198 l~~l~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~ 234 (388)
++ .-.|.+|+++. ....+|..+..+..|+.|-|.+.
T Consensus 208 l~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 208 LC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred Hh-CCceeeeecccCceeecchhhhhhhhheeeeeccC
Confidence 23 22455555555 44455555555666666666553
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=9.8e-05 Score=64.71 Aligned_cols=142 Identities=18% Similarity=0.137 Sum_probs=78.0
Q ss_pred CCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCc
Q 040122 222 AFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNL 301 (388)
Q Consensus 222 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l 301 (388)
..+.++.+++.+ +.+.+| .+...++.++|.|++|+++.+..-..+-..-....+|+.|.+.+. .+.-....++...+
T Consensus 69 ~~~~v~elDL~~-N~iSdW-seI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT-~L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 69 SVTDVKELDLTG-NLISDW-SEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT-GLSWTQSTSSLDDL 145 (418)
T ss_pred Hhhhhhhhhccc-chhccH-HHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCC-CCChhhhhhhhhcc
Confidence 346677778776 334443 233334578888889888886543332111123468888888774 33222233455788
Q ss_pred cccceeeEccccccchhhcccccccCCccccccccceEecccCCCcceecCCCccccCCCcceEEeccCC
Q 040122 302 VNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTSFCLGNYALEFPSLKQVVVRQCP 371 (388)
Q Consensus 302 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 371 (388)
|.+++|+++.++ .+++-..+++.++. -+.+++|+...|+...-.........||++..+.+..||
T Consensus 146 P~vtelHmS~N~-~rq~n~Dd~c~e~~----s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 146 PKVTELHMSDNS-LRQLNLDDNCIEDW----STEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP 210 (418)
T ss_pred hhhhhhhhccch-hhhhcccccccccc----chhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc
Confidence 899999998874 44444433333332 145666666665322111000111126777777776665
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.12 E-value=0.00088 Score=41.59 Aligned_cols=39 Identities=31% Similarity=0.490 Sum_probs=27.1
Q ss_pred CCccEEEecCCCCCcccCChhhhhcCCCCcEEEecccccccee
Q 040122 78 NNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEV 120 (388)
Q Consensus 78 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i 120 (388)
++|++|++++| +++++++. +++|++|++|++++| .+..+
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~--l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPE--LSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGH--GTTCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCC-CCcccCch--HhCCCCCCEEEecCC-CCCCC
Confidence 47888888887 67775553 788888888888886 45554
No 50
>PLN03150 hypothetical protein; Provisional
Probab=97.07 E-value=0.0013 Score=66.29 Aligned_cols=83 Identities=14% Similarity=0.096 Sum_probs=59.0
Q ss_pred CccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccCCC
Q 040122 79 NLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFT 158 (388)
Q Consensus 79 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 158 (388)
.++.|+|+++ .+....|.. +.++++|++|++++|...+.+|.. +..+++|+.|+++++.....+ +.
T Consensus 419 ~v~~L~L~~n-~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~----------~~~l~~L~~LdLs~N~lsg~i--P~ 484 (623)
T PLN03150 419 FIDGLGLDNQ-GLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPS----------LGSITSLEVLDLSYNSFNGSI--PE 484 (623)
T ss_pred EEEEEECCCC-CccccCCHH-HhCCCCCCEEECCCCcccCcCChH----------HhCCCCCCEEECCCCCCCCCC--ch
Confidence 3678888877 555545554 788899999999987544455543 356888999999887543344 33
Q ss_pred CccccCCCcceEeEecCC
Q 040122 159 GNIIELPKLEYLIIENCP 176 (388)
Q Consensus 159 ~~~~~l~~L~~L~l~~c~ 176 (388)
. ++.+++|++|++.++.
T Consensus 485 ~-l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 485 S-LGQLTSLRILNLNGNS 501 (623)
T ss_pred H-HhcCCCCCEEECcCCc
Confidence 3 6788899999998874
No 51
>PLN03150 hypothetical protein; Provisional
Probab=96.81 E-value=0.0022 Score=64.61 Aligned_cols=113 Identities=8% Similarity=0.007 Sum_probs=70.3
Q ss_pred ccEEEEecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEccccccchhhcccccccCCccccc
Q 040122 254 LERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVF 333 (388)
Q Consensus 254 L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 333 (388)
++.|++.++.....+|..+..+++|+.|+++++ .+...... ....+++|+.|++++|.....++. ....+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N-~l~g~iP~-~~~~l~~L~~LdLs~N~lsg~iP~--------~l~~L 489 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGN-SIRGNIPP-SLGSITSLEVLDLSYNSFNGSIPE--------SLGQL 489 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCC-cccCcCCh-HHhCCCCCCEEECCCCCCCCCCch--------HHhcC
Confidence 667777777666677777778888888888876 34322121 236778888888888765544443 23456
Q ss_pred cccceEecccCCCcceecCCCccccCCCcceEEeccCCCccccc
Q 040122 334 KELEYLGLDCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFS 377 (388)
Q Consensus 334 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp 377 (388)
++|+.|+++++..-..+|..... ...++..+++.+++.+...|
T Consensus 490 ~~L~~L~Ls~N~l~g~iP~~l~~-~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVPAALGG-RLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCCCEEECcCCcccccCChHHhh-ccccCceEEecCCccccCCC
Confidence 78888888876544455543321 12355677777766555443
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=0.00096 Score=58.67 Aligned_cols=69 Identities=12% Similarity=0.179 Sum_probs=36.5
Q ss_pred hhhccccEEEEecCCCcccc-cCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEccccccchh
Q 040122 249 KAFANLERLEISECSKLQKL-VPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQI 318 (388)
Q Consensus 249 ~~~~~L~~L~i~~~~~~~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 318 (388)
..++++..+.+..|+.-..- -.....+|.+-.|+++. .++.+.....-...+++|..|.+++++.++.+
T Consensus 196 r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 196 RIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hhcccchheeeecCcccchhhcccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 44566666666666432211 11223344455555554 24444433333456677777777777766544
No 53
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.70 E-value=7.8e-05 Score=70.78 Aligned_cols=172 Identities=19% Similarity=0.187 Sum_probs=110.0
Q ss_pred cccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccc
Q 040122 75 RFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRF 154 (388)
Q Consensus 75 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 154 (388)
..|-.|+.+.+..+ .+..++.. +.++..|.+|+++.+ .+..+|.- -..--|+.|-+++. +++.+
T Consensus 95 ~~f~~Le~liLy~n-~~r~ip~~--i~~L~~lt~l~ls~N-qlS~lp~~-----------lC~lpLkvli~sNN-kl~~l 158 (722)
T KOG0532|consen 95 CAFVSLESLILYHN-CIRTIPEA--ICNLEALTFLDLSSN-QLSHLPDG-----------LCDLPLKVLIVSNN-KLTSL 158 (722)
T ss_pred HHHHHHHHHHHHhc-cceecchh--hhhhhHHHHhhhccc-hhhcCChh-----------hhcCcceeEEEecC-ccccC
Confidence 44667777777665 34443443 788888888888884 44444442 12344677777664 56666
Q ss_pred cCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEec-ccccccccccCCCCcceEEecC
Q 040122 155 CNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVAN-QIQHLFDEKVAFPQLGNLRLSG 233 (388)
Q Consensus 155 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~ 233 (388)
+.. ++..+.|..|+++.| .+..++.. ++++.+|+.|.+.. ....++.++..+ .|..|++++
T Consensus 159 --p~~-ig~~~tl~~ld~s~n-ei~slpsq-------------l~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfSc 220 (722)
T KOG0532|consen 159 --PEE-IGLLPTLAHLDVSKN-EIQSLPSQ-------------LGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSC 220 (722)
T ss_pred --Ccc-cccchhHHHhhhhhh-hhhhchHH-------------hhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeeccc
Confidence 444 667888888888887 56666654 67788888887776 556666666644 567788875
Q ss_pred CCCcceecccCchhHhhhccccEEEEecCCCcccccCCc---cccCCCCEEeeccC
Q 040122 234 LHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPS---WHLENLEALKVSKC 286 (388)
Q Consensus 234 ~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~---~~~~~L~~L~l~~c 286 (388)
+++..+|.+. ..+..|++|-+.+++.- +-|..+ +...-.++|++..|
T Consensus 221 -Nkis~iPv~f----r~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 221 -NKISYLPVDF----RKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred -Cceeecchhh----hhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 6778777643 67788888888876532 222211 22233456666555
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.54 E-value=0.005 Score=51.26 Aligned_cols=107 Identities=21% Similarity=0.255 Sum_probs=57.5
Q ss_pred CCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceec-ccccccccccccCCcCccccEeecccCcccccccC
Q 040122 78 NNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVL-HLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCN 156 (388)
Q Consensus 78 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 156 (388)
.+...+++++++ +..... +.++++|.+|.+.++ .+..|. .+ ...+++|+.|.+.+++ +.++..
T Consensus 42 d~~d~iDLtdNd-l~~l~~---lp~l~rL~tLll~nN-rIt~I~p~L----------~~~~p~l~~L~LtnNs-i~~l~d 105 (233)
T KOG1644|consen 42 DQFDAIDLTDND-LRKLDN---LPHLPRLHTLLLNNN-RITRIDPDL----------DTFLPNLKTLILTNNS-IQELGD 105 (233)
T ss_pred cccceecccccc-hhhccc---CCCccccceEEecCC-cceeeccch----------hhhccccceEEecCcc-hhhhhh
Confidence 445566776663 332222 566777777777764 344432 22 2446677777776542 333322
Q ss_pred CCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEec
Q 040122 157 FTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVAN 211 (388)
Q Consensus 157 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~ 211 (388)
... +..||.|++|.+-+.+.-..-..-.. -+..+|+|+.|++..
T Consensus 106 l~p-La~~p~L~~Ltll~Npv~~k~~YR~y----------vl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 106 LDP-LASCPKLEYLTLLGNPVEHKKNYRLY----------VLYKLPSLRTLDFQK 149 (233)
T ss_pred cch-hccCCccceeeecCCchhcccCceeE----------EEEecCcceEeehhh
Confidence 223 55677777777766542221111111 256777777777776
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.27 E-value=0.0087 Score=49.87 Aligned_cols=87 Identities=25% Similarity=0.332 Sum_probs=38.4
Q ss_pred cCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccC
Q 040122 77 FNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCN 156 (388)
Q Consensus 77 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 156 (388)
++.|.+|.+.+| .++.+-|. ....+++|..|.+.+ +++.++.++..+ ..|++|++|.+.+.+--..-..
T Consensus 63 l~rL~tLll~nN-rIt~I~p~-L~~~~p~l~~L~Ltn-Nsi~~l~dl~pL--------a~~p~L~~Ltll~Npv~~k~~Y 131 (233)
T KOG1644|consen 63 LPRLHTLLLNNN-RITRIDPD-LDTFLPNLKTLILTN-NSIQELGDLDPL--------ASCPKLEYLTLLGNPVEHKKNY 131 (233)
T ss_pred ccccceEEecCC-cceeeccc-hhhhccccceEEecC-cchhhhhhcchh--------ccCCccceeeecCCchhcccCc
Confidence 455555555554 34442222 133445566666655 334444443332 4455666665554431111000
Q ss_pred CCCccccCCCcceEeEec
Q 040122 157 FTGNIIELPKLEYLIIEN 174 (388)
Q Consensus 157 ~~~~~~~l~~L~~L~l~~ 174 (388)
-...+..+|+|+.|++.+
T Consensus 132 R~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 132 RLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeEEEEecCcceEeehhh
Confidence 001133555666655554
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.19 E-value=0.0078 Score=37.29 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=28.2
Q ss_pred CCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccC
Q 040122 50 LDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAI 95 (388)
Q Consensus 50 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 95 (388)
++|++|+++++. ++.++... ..+++|+.|++++| .+++++
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l----~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPEL----SNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHG----TTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCC-CcccCchH----hCCCCCCEEEecCC-CCCCCc
Confidence 478999998875 77655434 67999999999988 566543
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.07 E-value=0.0022 Score=55.36 Aligned_cols=13 Identities=46% Similarity=0.657 Sum_probs=6.3
Q ss_pred cCCCcceEeEecC
Q 040122 163 ELPKLEYLIIENC 175 (388)
Q Consensus 163 ~l~~L~~L~l~~c 175 (388)
.+++|..|++.+|
T Consensus 114 ~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 114 ELENLKSLDLFNC 126 (260)
T ss_pred hhcchhhhhcccC
Confidence 4444445554444
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.00041 Score=60.34 Aligned_cols=107 Identities=20% Similarity=0.161 Sum_probs=72.3
Q ss_pred CCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCcc
Q 040122 223 FPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLV 302 (388)
Q Consensus 223 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~ 302 (388)
+.+.+.|+.++| ++.++... ..++.|++|.++-++ ++.+ ..+..|.+|+.|++... .+.++......+++|
T Consensus 18 l~~vkKLNcwg~-~L~DIsic-----~kMp~lEVLsLSvNk-IssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISIC-----EKMPLLEVLSLSVNK-ISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCC-CccHHHHH-----HhcccceeEEeeccc-cccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCc
Confidence 456778888886 57776543 778899999998864 3333 35778899999998763 577776666778999
Q ss_pred ccceeeEccccccchhhcccccccCCccccccccceEec
Q 040122 303 NLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGL 341 (388)
Q Consensus 303 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 341 (388)
+|+.|++..|+..+.... .-...-...+|+|+.|+=
T Consensus 89 sLr~LWL~ENPCc~~ag~---nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQ---NYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhhhHhhccCCcccccch---hHHHHHHHHcccchhccC
Confidence 999999988876543311 000001144577776643
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.49 E-value=0.00096 Score=65.50 Aligned_cols=110 Identities=19% Similarity=0.131 Sum_probs=63.9
Q ss_pred ccccccCCceEEEecccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccC
Q 040122 197 EPQKLKSEENLLVANQIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLE 276 (388)
Q Consensus 197 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~ 276 (388)
.++-++.++.|+++++--.-...+..+++|++|+|+. +.+..++.-.. ..| +|+.|.+.++..- . ..++.++.
T Consensus 182 SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsy-N~L~~vp~l~~---~gc-~L~~L~lrnN~l~-t-L~gie~Lk 254 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSY-NCLRHVPQLSM---VGC-KLQLLNLRNNALT-T-LRGIENLK 254 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhHHHHhccccccccccc-chhccccccch---hhh-hheeeeecccHHH-h-hhhHHhhh
Confidence 4666777888888772222222566778888888875 34555543221 222 3777877776432 2 23566777
Q ss_pred CCCEEeeccCcCcccccchhhhcCccccceeeEccccc
Q 040122 277 NLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKM 314 (388)
Q Consensus 277 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 314 (388)
+|+-|++++. -+.+.........|..|..|++.+|+.
T Consensus 255 sL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 255 SLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 7777777763 233322222234566777777777763
No 60
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=0.0017 Score=53.98 Aligned_cols=46 Identities=13% Similarity=0.218 Sum_probs=25.5
Q ss_pred ccccCCCCEEeeccCcCcccccchhhhcCccccceeeEccccccch
Q 040122 272 SWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQ 317 (388)
Q Consensus 272 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 317 (388)
+..++.++.|.+.+|..+.|.....+.+-.++|+.|+|++|+.+++
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 3445555566666666555554444444455666666666665543
No 61
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.38 E-value=0.0048 Score=59.12 Aligned_cols=59 Identities=17% Similarity=0.092 Sum_probs=27.8
Q ss_pred ccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEecc
Q 040122 46 KIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRN 113 (388)
Q Consensus 46 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 113 (388)
+..+.+|+.|++.+.. +..+.... ..+++|++|+++++ .++.+.+ +..++.|+.|++++
T Consensus 91 l~~~~~l~~l~l~~n~-i~~i~~~l----~~~~~L~~L~ls~N-~I~~i~~---l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNK-IEKIENLL----SSLVNLQVLDLSFN-KITKLEG---LSTLTLLKELNLSG 149 (414)
T ss_pred cccccceeeeeccccc-hhhcccch----hhhhcchheecccc-ccccccc---hhhccchhhheecc
Confidence 3445555555555433 33221111 34555555555555 4444333 34455555555555
No 62
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.38 E-value=0.0036 Score=59.94 Aligned_cols=86 Identities=17% Similarity=0.188 Sum_probs=51.0
Q ss_pred cccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccc
Q 040122 75 RFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRF 154 (388)
Q Consensus 75 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 154 (388)
..+.+|..+++.++ .+..+... +..+++|++|++++ +.++.+..+ ..++.|+.|+++++. +..+
T Consensus 92 ~~~~~l~~l~l~~n-~i~~i~~~--l~~~~~L~~L~ls~-N~I~~i~~l-----------~~l~~L~~L~l~~N~-i~~~ 155 (414)
T KOG0531|consen 92 SKLKSLEALDLYDN-KIEKIENL--LSSLVNLQVLDLSF-NKITKLEGL-----------STLTLLKELNLSGNL-ISDI 155 (414)
T ss_pred ccccceeeeecccc-chhhcccc--hhhhhcchheeccc-cccccccch-----------hhccchhhheeccCc-chhc
Confidence 34677777777776 45543331 46677888888887 345554332 345667777777653 3444
Q ss_pred cCCCCccccCCCcceEeEecCCCcccc
Q 040122 155 CNFTGNIIELPKLEYLIIENCPDMETF 181 (388)
Q Consensus 155 ~~~~~~~~~l~~L~~L~l~~c~~l~~~ 181 (388)
.....+++|+.+++.++ .+..+
T Consensus 156 ----~~~~~l~~L~~l~l~~n-~i~~i 177 (414)
T KOG0531|consen 156 ----SGLESLKSLKLLDLSYN-RIVDI 177 (414)
T ss_pred ----cCCccchhhhcccCCcc-hhhhh
Confidence 11334677777777775 34433
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.80 E-value=0.0014 Score=57.07 Aligned_cols=82 Identities=24% Similarity=0.231 Sum_probs=43.1
Q ss_pred CCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccc
Q 040122 49 FLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSA 128 (388)
Q Consensus 49 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~ 128 (388)
+.+.+.|+..+|. +.++.... .++.|+.|.|+-| +++++-| +..|++|++|++..| .+..+-.+.+
T Consensus 18 l~~vkKLNcwg~~-L~DIsic~-----kMp~lEVLsLSvN-kIssL~p---l~rCtrLkElYLRkN-~I~sldEL~Y--- 83 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISICE-----KMPLLEVLSLSVN-KISSLAP---LQRCTRLKELYLRKN-CIESLDELEY--- 83 (388)
T ss_pred HHHhhhhcccCCC-ccHHHHHH-----hcccceeEEeecc-ccccchh---HHHHHHHHHHHHHhc-ccccHHHHHH---
Confidence 4455666666665 55443333 4666666666655 4554333 566666666666652 3333322222
Q ss_pred cccccCCcCccccEeecccCc
Q 040122 129 KEEHIGPLFPRLLSLKLIDLP 149 (388)
Q Consensus 129 ~~~~~~~~~~~L~~L~l~~~~ 149 (388)
+..+++|+.|.|..++
T Consensus 84 -----LknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 84 -----LKNLPSLRTLWLDENP 99 (388)
T ss_pred -----HhcCchhhhHhhccCC
Confidence 2456666666665443
No 64
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.70 E-value=0.024 Score=29.18 Aligned_cols=21 Identities=5% Similarity=0.131 Sum_probs=16.2
Q ss_pred CcceEEeccCCCcccccCCCCC
Q 040122 361 SLKQVVVRQCPKMKIFSQGLLD 382 (388)
Q Consensus 361 ~L~~L~l~~c~~l~~lp~~~~~ 382 (388)
+|++|++++| +++.+|.++.+
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 5788888888 77788877654
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.63 E-value=0.017 Score=50.11 Aligned_cols=110 Identities=17% Similarity=0.198 Sum_probs=62.2
Q ss_pred CCCcceEEecCccccceeccccccCccccCCccEEEecCC--CCCcccCChhhhhcCCCCcEEEeccccccceecccccc
Q 040122 49 FLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDS--TNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEEL 126 (388)
Q Consensus 49 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~ 126 (388)
+..|+.|.+.++. ++..- . + -.+++|++|.++++ .-...+... ..++|+|++|++++| .+..+..+..
T Consensus 42 ~~~le~ls~~n~g-ltt~~--~-~--P~Lp~LkkL~lsdn~~~~~~~l~vl--~e~~P~l~~l~ls~N-ki~~lstl~p- 111 (260)
T KOG2739|consen 42 FVELELLSVINVG-LTTLT--N-F--PKLPKLKKLELSDNYRRVSGGLEVL--AEKAPNLKVLNLSGN-KIKDLSTLRP- 111 (260)
T ss_pred ccchhhhhhhccc-eeecc--c-C--CCcchhhhhcccCCcccccccceeh--hhhCCceeEEeecCC-ccccccccch-
Confidence 4556666655544 22111 1 1 24788889988877 333332332 566789999999885 3333322222
Q ss_pred cccccccCCcCccccEeecccCcccc--cccCCCCccccCCCcceEeEecCCC
Q 040122 127 SAKEEHIGPLFPRLLSLKLIDLPKLK--RFCNFTGNIIELPKLEYLIIENCPD 177 (388)
Q Consensus 127 ~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~~~~l~~L~~L~l~~c~~ 177 (388)
...+.+|..|++.+|+-.. .. -......+|+|++|+-..+..
T Consensus 112 -------l~~l~nL~~Ldl~n~~~~~l~dy--re~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 112 -------LKELENLKSLDLFNCSVTNLDDY--REKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred -------hhhhcchhhhhcccCCccccccH--HHHHHHHhhhhccccccccCC
Confidence 2557778888888875322 21 112134578888887776644
No 66
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.60 E-value=0.0011 Score=65.01 Aligned_cols=90 Identities=17% Similarity=0.152 Sum_probs=48.5
Q ss_pred hhHHHHhhhccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccc
Q 040122 37 STIQKCYDEKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDS 116 (388)
Q Consensus 37 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 116 (388)
+.++.+-..+.-++.|+.|+++.+. +.... .. ..+++|++|++++| .+..++... ...+. |..|.+.+| .
T Consensus 174 N~L~~mD~SLqll~ale~LnLshNk-~~~v~-~L----r~l~~LkhLDlsyN-~L~~vp~l~-~~gc~-L~~L~lrnN-~ 243 (1096)
T KOG1859|consen 174 NRLVLMDESLQLLPALESLNLSHNK-FTKVD-NL----RRLPKLKHLDLSYN-CLRHVPQLS-MVGCK-LQLLNLRNN-A 243 (1096)
T ss_pred hhHHhHHHHHHHHHHhhhhccchhh-hhhhH-HH----Hhcccccccccccc-hhccccccc-hhhhh-heeeeeccc-H
Confidence 3444455555566777777777654 33211 22 45777777777776 555544433 22233 666666663 3
Q ss_pred cceecccccccccccccCCcCccccEeeccc
Q 040122 117 LEEVLHLEELSAKEEHIGPLFPRLLSLKLID 147 (388)
Q Consensus 117 l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~ 147 (388)
++.+-.+ ..+.+|+.|+++.
T Consensus 244 l~tL~gi-----------e~LksL~~LDlsy 263 (1096)
T KOG1859|consen 244 LTTLRGI-----------ENLKSLYGLDLSY 263 (1096)
T ss_pred HHhhhhH-----------HhhhhhhccchhH
Confidence 3333222 3456666666653
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.44 E-value=0.26 Score=38.28 Aligned_cols=13 Identities=23% Similarity=0.219 Sum_probs=4.2
Q ss_pred hhcCCCCcEEEec
Q 040122 100 LRCLNNLEWLAVR 112 (388)
Q Consensus 100 ~~~l~~L~~L~l~ 112 (388)
+.++.+|+.+.+.
T Consensus 8 F~~~~~l~~i~~~ 20 (129)
T PF13306_consen 8 FYNCSNLESITFP 20 (129)
T ss_dssp TTT-TT--EEEET
T ss_pred HhCCCCCCEEEEC
Confidence 3344444444443
No 68
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.34 E-value=0.0044 Score=51.54 Aligned_cols=49 Identities=18% Similarity=0.163 Sum_probs=36.7
Q ss_pred CcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCC
Q 040122 135 PLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSN 184 (388)
Q Consensus 135 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 184 (388)
..++.++.|.+.+|..+.++..... -+..++|+.|++++|++++.....
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l-~~~~~~L~~L~lsgC~rIT~~GL~ 170 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERL-GGLAPSLQDLDLSGCPRITDGGLA 170 (221)
T ss_pred hccchhhhheeccccchhhHHHHHh-cccccchheeeccCCCeechhHHH
Confidence 5678888888888888877743322 235789999999999999877654
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.73 E-value=0.047 Score=26.10 Aligned_cols=17 Identities=12% Similarity=0.339 Sum_probs=8.8
Q ss_pred CCcceEEeccCCCccccc
Q 040122 360 PSLKQVVVRQCPKMKIFS 377 (388)
Q Consensus 360 ~~L~~L~l~~c~~l~~lp 377 (388)
++|++|++++|. ++.+|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 466777777776 66655
No 70
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.64 E-value=0.029 Score=49.01 Aligned_cols=203 Identities=13% Similarity=0.033 Sum_probs=98.7
Q ss_pred ccCcceeeecCCCCc-hhHHHHhhhccCCCCcceEEecCccc--cce-eccccc---cCccccCCccEEEecCCCCCccc
Q 040122 22 KEEGELHHWEGNNLN-STIQKCYDEKIGFLDINRLQLSHFPR--LQE-IWHGQA---LPVRFFNNLAELVVDDSTNMSSA 94 (388)
Q Consensus 22 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~--l~~-~~~~~~---~~~~~~~~L~~L~l~~~~~l~~~ 94 (388)
|....+.+.+|+... ...+.+...+.+-.+|+..++++... ..+ ++.... ..--.||+|+.+++++|-....+
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 566777888885332 33456667777777888888775321 110 000000 00145899999999988544443
Q ss_pred CChh--hhhcCCCCcEEEeccccccceecccccc-cc---cccccCCcCccccEeecccCcccccccC--CCCccccCCC
Q 040122 95 IPAN--LLRCLNNLEWLAVRNCDSLEEVLHLEEL-SA---KEEHIGPLFPRLLSLKLIDLPKLKRFCN--FTGNIIELPK 166 (388)
Q Consensus 95 ~~~~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~-~~---~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~l~~ 166 (388)
++.- ++++-..|.||.+++| +++.+....-. .. ....-...-|.|+......+. +..... ....+..-.+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~~l~sh~~ 186 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKELSAALLESHEN 186 (388)
T ss_pred chHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHHHHHHHHHhhcC
Confidence 3321 4677788999999886 23222110000 00 000001234556655554332 222100 0000112247
Q ss_pred cceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEeccc------ccccccccCCCCcceEEecCC
Q 040122 167 LEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVANQI------QHLFDEKVAFPQLGNLRLSGL 234 (388)
Q Consensus 167 L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~~~------~~~~~~~~~~~~L~~L~l~~~ 234 (388)
|+++.+... .+..-+.... .. -++..+.+|+.|++.++. ..+...+..++.|+.|.+.+|
T Consensus 187 lk~vki~qN-gIrpegv~~L--~~-----~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 187 LKEVKIQQN-GIRPEGVTML--AF-----LGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred ceeEEeeec-CcCcchhHHH--HH-----HHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 777777764 3332211110 00 025567778888877611 122223334555666666665
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.22 E-value=1.4 Score=34.15 Aligned_cols=11 Identities=9% Similarity=0.105 Sum_probs=3.8
Q ss_pred cCCCcceEeEe
Q 040122 163 ELPKLEYLIIE 173 (388)
Q Consensus 163 ~l~~L~~L~l~ 173 (388)
.+++|+.+.+.
T Consensus 33 ~~~~l~~i~~~ 43 (129)
T PF13306_consen 33 NCTSLKSINFP 43 (129)
T ss_dssp T-TT-SEEEES
T ss_pred ccccccccccc
Confidence 34444444443
No 72
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=91.20 E-value=0.015 Score=45.47 Aligned_cols=107 Identities=21% Similarity=0.152 Sum_probs=67.4
Q ss_pred CCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceeccccccccc
Q 040122 50 LDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAK 129 (388)
Q Consensus 50 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~ 129 (388)
..+..++++.|+ +.++.... .....-.+|..+++++| .++. .|..+..+++.++.|++.+ +.+..+|..
T Consensus 27 kE~h~ldLssc~-lm~i~dav-y~l~~~~el~~i~ls~N-~fk~-fp~kft~kf~t~t~lNl~~-neisdvPeE------ 95 (177)
T KOG4579|consen 27 KELHFLDLSSCQ-LMYIADAV-YMLSKGYELTKISLSDN-GFKK-FPKKFTIKFPTATTLNLAN-NEISDVPEE------ 95 (177)
T ss_pred HHhhhcccccch-hhHHHHHH-HHHhCCceEEEEecccc-hhhh-CCHHHhhccchhhhhhcch-hhhhhchHH------
Confidence 345667777776 44333333 12234567778889888 6676 4555567778899999988 566666654
Q ss_pred ccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecC
Q 040122 130 EEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENC 175 (388)
Q Consensus 130 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 175 (388)
+..++.|+.|++..++..... .. +..+.++-.|+..+.
T Consensus 96 ----~Aam~aLr~lNl~~N~l~~~p---~v-i~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 96 ----LAAMPALRSLNLRFNPLNAEP---RV-IAPLIKLDMLDSPEN 133 (177)
T ss_pred ----HhhhHHhhhcccccCccccch---HH-HHHHHhHHHhcCCCC
Confidence 356889999999876543222 12 445666666666553
No 73
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=89.96 E-value=0.18 Score=27.10 Aligned_cols=17 Identities=18% Similarity=0.526 Sum_probs=13.6
Q ss_pred CCCcceEEeccCCCccc
Q 040122 359 FPSLKQVVVRQCPKMKI 375 (388)
Q Consensus 359 ~~~L~~L~l~~c~~l~~ 375 (388)
+|+|++|++++|+++++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 47888888888888775
No 74
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=80.65 E-value=0.44 Score=41.93 Aligned_cols=114 Identities=11% Similarity=-0.066 Sum_probs=54.0
Q ss_pred cccccCCceEEEec--ccccc----cccccCCCCcceEEecCCCCcceecccCch-----h-----HhhhccccEEEEec
Q 040122 198 PQKLKSEENLLVAN--QIQHL----FDEKVAFPQLGNLRLSGLHKVQHLWKENDE-----S-----NKAFANLERLEISE 261 (388)
Q Consensus 198 l~~l~~L~~L~l~~--~~~~~----~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-----~-----~~~~~~L~~L~i~~ 261 (388)
+-.||.|+.+++++ ..... ...+++-+.|.+|.+.+| ++..+..+... . ...-|.|+++....
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 55678888888887 11222 223345567888888775 44443322211 0 02234566655554
Q ss_pred CCCccc----ccCCccccCCCCEEeeccCcCcccccch----hhhcCccccceeeEcccc
Q 040122 262 CSKLQK----LVPPSWHLENLEALKVSKCHELINVLTL----SASKNLVNLGRMMIADCK 313 (388)
Q Consensus 262 ~~~~~~----~~~~~~~~~~L~~L~l~~c~~l~~~~~~----~~~~~l~~L~~L~l~~~~ 313 (388)
++...- ....+.+-.+|+.+.+... .++--... -....+++|+.|++.++.
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNt 225 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNT 225 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence 432110 0111222346666666543 22211000 112455677777776654
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=72.61 E-value=2.2 Score=22.61 Aligned_cols=21 Identities=14% Similarity=0.453 Sum_probs=13.1
Q ss_pred CCcceEEeccCCCcccccCCCC
Q 040122 360 PSLKQVVVRQCPKMKIFSQGLL 381 (388)
Q Consensus 360 ~~L~~L~l~~c~~l~~lp~~~~ 381 (388)
++|+.|++.++ +++.+|.+..
T Consensus 2 ~~L~~L~L~~N-~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNN-QLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCC-cCCcCCHHHc
Confidence 46677777664 4666666543
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=72.61 E-value=2.2 Score=22.61 Aligned_cols=21 Identities=14% Similarity=0.453 Sum_probs=13.1
Q ss_pred CCcceEEeccCCCcccccCCCC
Q 040122 360 PSLKQVVVRQCPKMKIFSQGLL 381 (388)
Q Consensus 360 ~~L~~L~l~~c~~l~~lp~~~~ 381 (388)
++|+.|++.++ +++.+|.+..
T Consensus 2 ~~L~~L~L~~N-~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNN-QLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCC-cCCcCCHHHc
Confidence 46677777664 4666666543
No 77
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=59.56 E-value=1 Score=35.56 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=36.6
Q ss_pred CCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccc
Q 040122 49 FLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDS 116 (388)
Q Consensus 49 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 116 (388)
-..|+..+++++. +...+..- ...++-+.+|++.++ .+.+ .|.. +..++.||.|+++.++.
T Consensus 52 ~~el~~i~ls~N~-fk~fp~kf---t~kf~t~t~lNl~~n-eisd-vPeE-~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 52 GYELTKISLSDNG-FKKFPKKF---TIKFPTATTLNLANN-EISD-VPEE-LAAMPALRSLNLRFNPL 112 (177)
T ss_pred CceEEEEecccch-hhhCCHHH---hhccchhhhhhcchh-hhhh-chHH-HhhhHHhhhcccccCcc
Confidence 3556666777654 33222111 134566777888776 5666 3444 77888888888887543
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=57.35 E-value=7.7 Score=19.96 Aligned_cols=12 Identities=42% Similarity=0.424 Sum_probs=6.2
Q ss_pred CCCcEEEecccc
Q 040122 104 NNLEWLAVRNCD 115 (388)
Q Consensus 104 ~~L~~L~l~~~~ 115 (388)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 566667776653
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=33.15 E-value=26 Score=18.84 Aligned_cols=18 Identities=28% Similarity=0.519 Sum_probs=12.3
Q ss_pred CCcceEEeccCCCcccccC
Q 040122 360 PSLKQVVVRQCPKMKIFSQ 378 (388)
Q Consensus 360 ~~L~~L~l~~c~~l~~lp~ 378 (388)
++|++|.+++ .+++++|.
T Consensus 2 ~~L~~L~vs~-N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSN-NQLTSLPE 19 (26)
T ss_pred cccceeecCC-CccccCcc
Confidence 4677777776 44777775
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=29.09 E-value=55 Score=17.51 Aligned_cols=10 Identities=40% Similarity=0.455 Sum_probs=6.4
Q ss_pred CCCcEEEecc
Q 040122 104 NNLEWLAVRN 113 (388)
Q Consensus 104 ~~L~~L~l~~ 113 (388)
.+|++|++++
T Consensus 2 ~~L~~L~L~~ 11 (26)
T smart00365 2 TNLEELDLSQ 11 (26)
T ss_pred CccCEEECCC
Confidence 4566666666
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=26.33 E-value=32 Score=33.75 Aligned_cols=87 Identities=18% Similarity=0.133 Sum_probs=44.2
Q ss_pred cccCCccEEEecCCCCCcccCChh-hhhcCCCCcEEEeccccc-cceecccccccccccccCCcCccccEeecccCcccc
Q 040122 75 RFFNNLAELVVDDSTNMSSAIPAN-LLRCLNNLEWLAVRNCDS-LEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLK 152 (388)
Q Consensus 75 ~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~L~~L~l~~~~~-l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 152 (388)
.+.+.+..+.+++| ++.++.... +....|+|+.|+|+++.. +..-..+. ......|+.|-+.+++-.+
T Consensus 215 ~n~p~i~sl~lsnN-rL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~---------K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNN-RLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELD---------KLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccc-hhhchhhhhHHHHhcchhheeecccchhhhcchhhhh---------hhcCCCHHHeeecCCcccc
Confidence 45677777777776 444322211 245567788888887621 11111100 1235556777777766555
Q ss_pred cccCCCCcc----ccCCCcceEe
Q 040122 153 RFCNFTGNI----IELPKLEYLI 171 (388)
Q Consensus 153 ~~~~~~~~~----~~l~~L~~L~ 171 (388)
.+......+ ..+|.|..||
T Consensus 285 tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 285 TFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred chhhhHHHHHHHHHhcchheeec
Confidence 542221111 1466666654
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=25.53 E-value=19 Score=35.31 Aligned_cols=11 Identities=45% Similarity=0.788 Sum_probs=5.1
Q ss_pred CCCcceEEecC
Q 040122 223 FPQLGNLRLSG 233 (388)
Q Consensus 223 ~~~L~~L~l~~ 233 (388)
+|.+..+.+++
T Consensus 217 ~p~i~sl~lsn 227 (585)
T KOG3763|consen 217 FPEILSLSLSN 227 (585)
T ss_pred Ccceeeeeccc
Confidence 44444444444
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=25.53 E-value=46 Score=17.92 Aligned_cols=11 Identities=27% Similarity=0.226 Sum_probs=7.3
Q ss_pred CCCcEEEeccc
Q 040122 104 NNLEWLAVRNC 114 (388)
Q Consensus 104 ~~L~~L~l~~~ 114 (388)
++|++|++++|
T Consensus 2 ~~L~~LdL~~N 12 (28)
T smart00368 2 PSLRELDLSNN 12 (28)
T ss_pred CccCEEECCCC
Confidence 45777777764
Done!