Query 040122
Match_columns 388
No_of_seqs 156 out of 1748
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 08:06:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040122.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040122hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.9 8.5E-23 2.9E-27 208.7 16.5 169 201-385 393-563 (768)
2 3rgz_A Protein brassinosteroid 99.9 2.2E-22 7.5E-27 205.7 17.5 252 10-286 267-548 (768)
3 4fmz_A Internalin; leucine ric 99.9 1.5E-21 5E-26 181.0 19.5 274 46-387 62-336 (347)
4 3vq2_A TLR4, TOLL-like recepto 99.9 4.9E-21 1.7E-25 190.8 22.2 97 8-114 52-163 (606)
5 4fmz_A Internalin; leucine ric 99.9 5.2E-21 1.8E-25 177.3 20.4 279 22-371 65-344 (347)
6 3t6q_A CD180 antigen; protein- 99.9 4.5E-20 1.5E-24 183.8 27.2 128 249-386 397-526 (606)
7 3t6q_A CD180 antigen; protein- 99.9 3.8E-20 1.3E-24 184.3 25.5 278 79-387 255-550 (606)
8 4eco_A Uncharacterized protein 99.9 2E-21 6.9E-26 194.3 16.2 301 41-387 197-569 (636)
9 1o6v_A Internalin A; bacterial 99.9 4.4E-20 1.5E-24 178.1 24.4 133 22-175 67-209 (466)
10 4eco_A Uncharacterized protein 99.9 3.7E-21 1.3E-25 192.4 17.4 75 42-122 239-322 (636)
11 3v47_A TOLL-like receptor 5B a 99.9 2.4E-20 8.3E-25 179.2 22.0 140 24-183 31-171 (455)
12 2id5_A Lingo-1, leucine rich r 99.9 5.5E-20 1.9E-24 177.9 24.5 278 45-371 51-331 (477)
13 2id5_A Lingo-1, leucine rich r 99.9 2.3E-20 8E-25 180.5 20.5 297 40-387 24-323 (477)
14 4ecn_A Leucine-rich repeat pro 99.9 1.3E-20 4.5E-25 192.6 19.1 115 42-175 481-605 (876)
15 3vq2_A TLR4, TOLL-like recepto 99.9 5.1E-20 1.8E-24 183.4 22.5 54 331-387 470-524 (606)
16 3o6n_A APL1; leucine-rich repe 99.8 3.9E-20 1.3E-24 174.3 19.5 280 47-371 66-350 (390)
17 4fcg_A Uncharacterized protein 99.8 3.9E-20 1.3E-24 170.0 17.7 224 49-342 80-309 (328)
18 3v47_A TOLL-like receptor 5B a 99.8 5.2E-20 1.8E-24 176.9 19.3 114 50-181 30-144 (455)
19 4ecn_A Leucine-rich repeat pro 99.8 3.7E-20 1.3E-24 189.3 17.9 303 42-387 440-809 (876)
20 2z7x_B TOLL-like receptor 1, v 99.8 1.3E-19 4.4E-24 177.2 20.8 133 250-387 322-471 (520)
21 3bz5_A Internalin-J, INLJ; leu 99.8 1.2E-19 4.1E-24 174.1 19.9 274 45-370 59-349 (457)
22 3o6n_A APL1; leucine-rich repe 99.8 1.3E-19 4.6E-24 170.6 19.4 281 48-387 43-342 (390)
23 2z63_A TOLL-like receptor 4, v 99.8 1.9E-19 6.5E-24 177.8 21.0 149 220-387 369-521 (570)
24 1o6v_A Internalin A; bacterial 99.8 2E-19 7E-24 173.4 20.0 280 46-387 64-378 (466)
25 3bz5_A Internalin-J, INLJ; leu 99.8 3.4E-19 1.2E-23 171.0 20.7 306 22-381 63-395 (457)
26 4fcg_A Uncharacterized protein 99.8 1.7E-19 5.8E-24 165.7 17.7 223 102-386 79-303 (328)
27 3oja_B Anopheles plasmodium-re 99.8 3.8E-19 1.3E-23 176.7 21.4 280 47-371 72-356 (597)
28 2ft3_A Biglycan; proteoglycan, 99.8 6.8E-19 2.3E-23 162.1 21.0 279 51-387 34-323 (332)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1E-18 3.5E-23 172.5 22.2 133 250-387 351-500 (562)
30 2z63_A TOLL-like receptor 4, v 99.8 6.6E-19 2.3E-23 174.0 19.8 176 198-387 278-473 (570)
31 3oja_B Anopheles plasmodium-re 99.8 6.1E-19 2.1E-23 175.2 19.6 281 48-387 49-348 (597)
32 2z81_A CD282 antigen, TOLL-lik 99.8 1.2E-19 4E-24 178.7 14.3 118 44-181 44-163 (549)
33 2z81_A CD282 antigen, TOLL-lik 99.8 2.9E-19 1E-23 175.8 17.1 163 200-387 332-500 (549)
34 2z7x_B TOLL-like receptor 1, v 99.8 1.1E-18 3.7E-23 170.6 20.6 123 252-387 302-447 (520)
35 3j0a_A TOLL-like receptor 5; m 99.8 4.2E-18 1.4E-22 175.8 25.0 105 202-312 266-372 (844)
36 3j0a_A TOLL-like receptor 5; m 99.8 4.2E-18 1.4E-22 175.8 24.8 292 44-377 42-378 (844)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.1E-18 7.1E-23 170.3 21.4 112 41-175 45-156 (562)
38 1ziw_A TOLL-like receptor 3; i 99.8 1.9E-18 6.4E-23 174.4 20.8 114 254-371 250-364 (680)
39 1xku_A Decorin; proteoglycan, 99.8 4.5E-18 1.5E-22 156.4 21.3 220 50-313 52-274 (330)
40 1xku_A Decorin; proteoglycan, 99.8 5.4E-18 1.8E-22 155.9 21.6 279 50-386 31-321 (330)
41 1ziw_A TOLL-like receptor 3; i 99.8 3.4E-18 1.1E-22 172.6 21.8 52 334-387 381-433 (680)
42 2ft3_A Biglycan; proteoglycan, 99.8 4.9E-18 1.7E-22 156.3 19.4 292 25-371 35-331 (332)
43 1ogq_A PGIP-2, polygalacturona 99.8 1.1E-18 3.9E-23 159.2 13.3 253 78-377 50-308 (313)
44 1ogq_A PGIP-2, polygalacturona 99.8 5.1E-18 1.7E-22 154.9 15.5 250 50-349 50-306 (313)
45 3zyj_A Leucine-rich repeat-con 99.8 1.8E-17 6.1E-22 158.6 19.5 235 39-313 55-290 (440)
46 3zyi_A Leucine-rich repeat-con 99.8 1.4E-17 4.8E-22 159.9 18.8 235 39-313 66-301 (452)
47 1ozn_A Reticulon 4 receptor; N 99.8 1.9E-17 6.6E-22 148.9 18.0 205 77-314 31-237 (285)
48 2z80_A TOLL-like receptor 2, v 99.7 8.5E-17 2.9E-21 149.3 17.6 278 47-374 28-315 (353)
49 2z66_A Variable lymphocyte rec 99.7 5.8E-17 2E-21 147.3 16.2 245 25-313 9-259 (306)
50 3g06_A SSPH2 (leucine-rich rep 99.7 2E-16 7E-21 156.5 20.2 139 201-375 160-299 (622)
51 3zyj_A Leucine-rich repeat-con 99.7 3.6E-16 1.2E-20 149.5 21.4 225 77-345 63-290 (440)
52 1jl5_A Outer protein YOPM; leu 99.7 3.4E-16 1.2E-20 150.0 20.6 80 78-181 131-210 (454)
53 2z66_A Variable lymphocyte rec 99.7 1.9E-16 6.5E-21 143.9 17.7 228 77-345 27-259 (306)
54 3zyi_A Leucine-rich repeat-con 99.7 4.5E-16 1.5E-20 149.3 21.2 225 77-345 74-301 (452)
55 3o53_A Protein LRIM1, AGAP0063 99.7 1.3E-17 4.5E-22 152.5 9.7 266 47-374 31-300 (317)
56 1jl5_A Outer protein YOPM; leu 99.7 2.9E-16 9.9E-21 150.5 19.5 75 50-148 131-205 (454)
57 4g8a_A TOLL-like receptor 4; l 99.7 4.1E-16 1.4E-20 155.7 21.4 124 249-383 442-565 (635)
58 2z80_A TOLL-like receptor 2, v 99.7 4.3E-17 1.5E-21 151.3 12.6 265 37-346 41-313 (353)
59 2p1m_B Transport inhibitor res 99.7 3.6E-18 1.2E-22 169.6 5.0 90 273-372 429-518 (594)
60 3g06_A SSPH2 (leucine-rich rep 99.7 1.1E-15 3.7E-20 151.3 22.0 247 50-387 40-287 (622)
61 2p1m_B Transport inhibitor res 99.7 2.1E-18 7.2E-23 171.2 1.8 158 9-180 63-226 (594)
62 3ogk_B Coronatine-insensitive 99.7 1.6E-17 5.4E-22 164.9 7.6 86 22-114 163-253 (592)
63 3ogk_B Coronatine-insensitive 99.7 3.6E-18 1.2E-22 169.6 2.4 338 10-372 71-448 (592)
64 3o53_A Protein LRIM1, AGAP0063 99.7 7.5E-17 2.6E-21 147.4 10.1 245 75-376 31-278 (317)
65 1ozn_A Reticulon 4 receptor; N 99.7 1.7E-15 5.9E-20 136.1 17.5 211 40-287 24-236 (285)
66 2xwt_C Thyrotropin receptor; s 99.7 3.3E-15 1.1E-19 130.7 17.2 33 334-371 205-237 (239)
67 3oja_A Leucine-rich immune mol 99.6 7E-16 2.4E-20 149.2 13.0 131 219-368 139-270 (487)
68 4ay9_X Follicle-stimulating ho 99.6 5.5E-15 1.9E-19 136.9 17.0 236 38-312 20-256 (350)
69 2ast_B S-phase kinase-associat 99.6 8.7E-17 3E-21 148.1 4.4 109 199-312 165-282 (336)
70 3oja_A Leucine-rich immune mol 99.6 4.9E-15 1.7E-19 143.3 16.9 222 42-315 26-250 (487)
71 4ay9_X Follicle-stimulating ho 99.6 1.7E-14 5.7E-19 133.7 19.6 226 77-368 29-254 (350)
72 2xwt_C Thyrotropin receptor; s 99.6 1E-14 3.5E-19 127.5 17.0 200 51-313 32-237 (239)
73 4g8a_A TOLL-like receptor 4; l 99.6 1.1E-13 3.8E-18 138.0 23.8 135 25-182 54-189 (635)
74 2z62_A TOLL-like receptor 4, v 99.6 3.8E-14 1.3E-18 126.7 18.3 201 78-313 28-235 (276)
75 1z7x_W Ribonuclease inhibitor; 99.6 5.6E-17 1.9E-21 155.9 -1.7 326 24-371 29-409 (461)
76 1p9a_G Platelet glycoprotein I 99.6 5.5E-14 1.9E-18 126.6 18.0 199 46-287 6-206 (290)
77 3rfs_A Internalin B, repeat mo 99.6 2.5E-14 8.7E-19 127.6 15.4 199 76-319 39-239 (272)
78 1z7x_W Ribonuclease inhibitor; 99.6 4.1E-16 1.4E-20 149.9 3.2 216 137-372 198-439 (461)
79 2o6q_A Variable lymphocyte rec 99.6 1.3E-13 4.5E-18 122.8 18.2 110 51-183 17-126 (270)
80 3rfs_A Internalin B, repeat mo 99.6 9.4E-15 3.2E-19 130.4 10.7 198 76-313 17-216 (272)
81 1wwl_A Monocyte differentiatio 99.6 1.7E-15 6E-20 138.0 5.7 34 334-371 274-307 (312)
82 2ast_B S-phase kinase-associat 99.6 1.3E-15 4.5E-20 140.2 5.0 258 78-381 47-314 (336)
83 1h6u_A Internalin H; cell adhe 99.6 8.1E-14 2.8E-18 126.6 15.7 188 77-313 40-228 (308)
84 2z62_A TOLL-like receptor 4, v 99.5 1.7E-13 5.7E-18 122.5 16.8 201 50-287 28-235 (276)
85 2o6q_A Variable lymphocyte rec 99.5 3.3E-13 1.1E-17 120.2 18.4 199 78-313 16-216 (270)
86 1h6u_A Internalin H; cell adhe 99.5 9.2E-14 3.1E-18 126.3 15.1 193 48-292 39-232 (308)
87 1p9a_G Platelet glycoprotein I 99.5 7.5E-13 2.6E-17 119.1 17.7 198 75-314 7-207 (290)
88 4glp_A Monocyte differentiatio 99.5 3.9E-14 1.3E-18 128.9 8.7 154 163-345 143-305 (310)
89 2ca6_A RAN GTPase-activating p 99.5 7.3E-15 2.5E-19 137.9 0.7 250 37-314 19-315 (386)
90 4glp_A Monocyte differentiatio 99.4 1.2E-12 4E-17 119.1 14.8 234 50-314 64-306 (310)
91 1wwl_A Monocyte differentiatio 99.4 2.6E-13 8.8E-18 123.6 10.4 229 52-314 65-308 (312)
92 3m19_A Variable lymphocyte rec 99.4 6.4E-12 2.2E-16 110.6 15.5 176 51-287 15-190 (251)
93 2ca6_A RAN GTPase-activating p 99.4 8.6E-14 3E-18 130.6 2.0 268 23-313 32-341 (386)
94 3m19_A Variable lymphocyte rec 99.3 2.6E-11 8.9E-16 106.6 16.0 177 78-314 14-191 (251)
95 1h6t_A Internalin B; cell adhe 99.3 9.5E-12 3.3E-16 112.0 13.3 165 77-286 45-210 (291)
96 1h6t_A Internalin B; cell adhe 99.3 1.1E-11 3.9E-16 111.4 13.1 166 49-263 45-211 (291)
97 4ezg_A Putative uncharacterize 99.3 1.1E-11 3.8E-16 104.8 11.0 148 77-263 43-192 (197)
98 4ezg_A Putative uncharacterize 99.3 1.6E-11 5.6E-16 103.7 11.7 153 100-313 40-192 (197)
99 1m9s_A Internalin B; cell inva 99.3 4.1E-12 1.4E-16 125.5 9.2 167 75-286 40-207 (605)
100 1m9s_A Internalin B; cell inva 99.3 1.2E-11 4.1E-16 122.2 12.1 170 48-266 41-211 (605)
101 3goz_A Leucine-rich repeat-con 99.3 8.8E-13 3E-17 122.6 3.5 122 45-179 17-151 (362)
102 2o6s_A Variable lymphocyte rec 99.3 4.6E-11 1.6E-15 101.8 12.0 160 77-275 27-188 (208)
103 2o6s_A Variable lymphocyte rec 99.1 5.2E-10 1.8E-14 95.2 13.3 173 81-320 10-183 (208)
104 3goz_A Leucine-rich repeat-con 99.1 5.7E-12 2E-16 117.1 1.1 248 76-345 20-295 (362)
105 1xeu_A Internalin C; cellular 99.1 9.6E-11 3.3E-15 103.7 8.6 103 49-180 18-120 (263)
106 3cvr_A Invasion plasmid antige 99.1 7.5E-10 2.6E-14 108.3 15.6 179 50-286 59-240 (571)
107 2v70_A SLIT-2, SLIT homolog 2 99.1 1.2E-09 4E-14 94.0 13.5 89 78-181 32-120 (220)
108 3cvr_A Invasion plasmid antige 99.1 1.4E-09 4.9E-14 106.4 15.6 181 78-319 59-247 (571)
109 1xeu_A Internalin C; cellular 99.1 5.3E-10 1.8E-14 98.9 11.3 143 47-233 38-181 (263)
110 2xot_A Amphoterin-induced prot 99.1 9.6E-10 3.3E-14 102.0 12.3 115 50-183 39-153 (361)
111 2v9t_B SLIT homolog 2 protein 99.1 2.6E-09 9E-14 91.8 13.8 34 78-113 32-65 (220)
112 3e6j_A Variable lymphocyte rec 99.0 2.6E-09 8.9E-14 92.4 13.3 34 78-113 40-73 (229)
113 3e6j_A Variable lymphocyte rec 99.0 3.7E-09 1.2E-13 91.4 13.8 60 199-262 109-169 (229)
114 2ell_A Acidic leucine-rich nuc 99.0 1.1E-09 3.7E-14 89.9 9.6 113 47-181 21-135 (168)
115 2v70_A SLIT-2, SLIT homolog 2 99.0 4.3E-09 1.5E-13 90.4 13.4 148 106-285 13-162 (220)
116 2v9t_B SLIT homolog 2 protein 99.0 6.5E-09 2.2E-13 89.3 13.6 98 107-233 14-113 (220)
117 2xot_A Amphoterin-induced prot 99.0 2.7E-09 9.1E-14 99.0 11.3 155 77-263 38-200 (361)
118 1dce_A Protein (RAB geranylger 99.0 1.4E-11 4.8E-16 120.9 -5.2 86 220-313 459-544 (567)
119 2je0_A Acidic leucine-rich nuc 98.9 5.2E-10 1.8E-14 89.8 4.4 113 48-182 15-129 (149)
120 1dce_A Protein (RAB geranylger 98.9 9.8E-11 3.4E-15 114.9 -0.6 119 139-282 442-566 (567)
121 2ell_A Acidic leucine-rich nuc 98.9 4.7E-09 1.6E-13 86.0 9.1 13 359-371 146-158 (168)
122 3sb4_A Hypothetical leucine ri 98.9 6.1E-09 2.1E-13 95.2 9.5 98 275-387 225-324 (329)
123 1a9n_A U2A', U2A'; complex (nu 98.8 1.1E-08 3.9E-13 84.5 8.6 38 135-175 61-98 (176)
124 2je0_A Acidic leucine-rich nuc 98.8 5.7E-09 1.9E-13 83.7 6.3 11 165-175 17-27 (149)
125 1w8a_A SLIT protein; signaling 98.8 4.5E-08 1.5E-12 82.1 11.3 82 79-175 30-112 (192)
126 3sb4_A Hypothetical leucine ri 98.8 1.1E-07 3.9E-12 86.7 14.5 101 200-309 224-328 (329)
127 4fdw_A Leucine rich hypothetic 98.7 4.7E-06 1.6E-10 78.0 24.3 41 139-184 158-198 (401)
128 1a9n_A U2A', U2A'; complex (nu 98.7 2.5E-08 8.6E-13 82.3 7.7 131 101-286 16-150 (176)
129 2wfh_A SLIT homolog 2 protein 98.7 1.7E-07 5.7E-12 78.6 11.9 90 77-183 30-119 (193)
130 2o6r_A Variable lymphocyte rec 98.6 2.5E-07 8.5E-12 76.3 11.6 90 77-182 27-116 (177)
131 4fdw_A Leucine rich hypothetic 98.6 3.1E-06 1.1E-10 79.2 20.4 215 50-312 135-355 (401)
132 1w8a_A SLIT protein; signaling 98.6 3.6E-07 1.2E-11 76.5 12.1 63 220-286 74-136 (192)
133 2wfh_A SLIT homolog 2 protein 98.6 2.9E-07 9.8E-12 77.2 10.8 98 141-262 13-112 (193)
134 4b8c_D Glucose-repressible alc 98.6 2.3E-08 8E-13 101.1 4.4 106 100-234 220-326 (727)
135 2o6r_A Variable lymphocyte rec 98.6 1.8E-07 6.3E-12 77.1 9.0 116 40-176 20-135 (177)
136 4b8c_D Glucose-repressible alc 98.5 2E-07 6.9E-12 94.2 8.1 118 39-180 213-330 (727)
137 1ds9_A Outer arm dynein; leuci 98.5 2.4E-09 8.1E-14 90.4 -5.8 81 75-175 45-125 (198)
138 3e4g_A ATP synthase subunit S, 98.4 1E-07 3.4E-12 77.8 3.7 90 253-349 62-154 (176)
139 1ds9_A Outer arm dynein; leuci 98.4 2.2E-08 7.5E-13 84.4 -0.6 62 249-313 90-151 (198)
140 3e4g_A ATP synthase subunit S, 98.4 1.9E-07 6.4E-12 76.2 4.5 90 277-374 62-153 (176)
141 4fs7_A Uncharacterized protein 98.4 3.7E-05 1.3E-09 71.8 20.6 99 272-387 293-391 (394)
142 3g39_A Variable lymphocyte rec 98.3 2.9E-06 9.8E-11 69.4 9.7 84 77-175 29-112 (170)
143 2r9u_A Variable lymphocyte rec 98.3 3.2E-06 1.1E-10 69.4 9.8 83 78-175 33-115 (174)
144 2ra8_A Uncharacterized protein 98.1 2.1E-06 7.1E-11 79.1 5.6 41 222-263 277-318 (362)
145 2ra8_A Uncharacterized protein 98.1 2.2E-06 7.6E-11 78.9 5.2 171 161-344 135-317 (362)
146 3g39_A Variable lymphocyte rec 98.0 1.5E-05 5.2E-10 65.0 8.7 60 250-312 52-112 (170)
147 2r9u_A Variable lymphocyte rec 98.0 1.9E-05 6.4E-10 64.8 8.9 60 250-312 55-115 (174)
148 4fs7_A Uncharacterized protein 98.0 0.00042 1.4E-08 64.5 18.3 259 75-387 68-369 (394)
149 2ifg_A High affinity nerve gro 97.9 2.7E-05 9.3E-10 71.3 8.3 95 38-149 20-114 (347)
150 4gt6_A Cell surface protein; l 97.8 0.0023 8E-08 59.4 20.7 104 249-369 262-366 (394)
151 3un9_A NLR family member X1; l 97.8 7.8E-07 2.7E-11 82.5 -3.7 66 103-175 71-136 (372)
152 3un9_A NLR family member X1; l 97.8 1.5E-06 5.1E-11 80.6 -1.8 12 164-175 154-165 (372)
153 4gt6_A Cell surface protein; l 97.7 0.005 1.7E-07 57.1 20.0 79 222-310 263-342 (394)
154 2ifg_A High affinity nerve gro 97.6 0.0001 3.5E-09 67.4 7.9 83 199-286 28-113 (347)
155 4h09_A Hypothetical leucine ri 96.9 0.12 4E-06 47.4 19.7 103 199-310 214-318 (379)
156 3rw6_A Nuclear RNA export fact 96.3 0.0048 1.6E-07 53.8 5.6 64 76-150 168-232 (267)
157 4h09_A Hypothetical leucine ri 96.2 0.68 2.3E-05 42.2 24.3 126 222-368 215-341 (379)
158 3rw6_A Nuclear RNA export fact 96.0 0.0076 2.6E-07 52.6 5.2 63 250-314 168-232 (267)
159 1io0_A Tropomodulin; LRR prote 95.8 0.0041 1.4E-07 51.1 2.7 126 40-175 26-161 (185)
160 1io0_A Tropomodulin; LRR prote 95.4 0.0049 1.7E-07 50.7 1.8 19 161-179 32-50 (185)
161 3rfe_A Platelet glycoprotein I 88.1 0.56 1.9E-05 35.7 4.4 37 77-115 30-66 (130)
162 3rfe_A Platelet glycoprotein I 73.7 3.8 0.00013 30.9 4.3 34 277-312 32-65 (130)
163 2lz0_A Uncharacterized protein 38.3 47 0.0016 23.5 4.6 14 198-211 39-52 (100)
164 1pgv_A TMD-1, tropomodulin TMD 31.6 19 0.00064 29.4 1.7 10 224-233 70-79 (197)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=8.5e-23 Score=208.71 Aligned_cols=169 Identities=12% Similarity=0.023 Sum_probs=96.1
Q ss_pred ccCCceEEEec--ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCC
Q 040122 201 LKSEENLLVAN--QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENL 278 (388)
Q Consensus 201 l~~L~~L~l~~--~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L 278 (388)
+++|+.|++++ ..+.++..++.+++|+.|+++++. +....+.. ...+++|++|++++|.....+|..+..+++|
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~---l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 468 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY-LSGTIPSS---LGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSE-EESCCCGG---GGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCc-ccCcccHH---HhcCCCCCEEECCCCcccCcCCHHHcCCCCc
Confidence 45566666555 222444555566666666666642 33221111 1556666777776666555666666666777
Q ss_pred CEEeeccCcCcccccchhhhcCccccceeeEccccccchhhcccccccCCccccccccceEecccCCCcceecCCCcccc
Q 040122 279 EALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTSFCLGNYALE 358 (388)
Q Consensus 279 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 358 (388)
++|+++++. +...... ...++++|++|++++|.....++. ....+++|++|+++++.....++.....
T Consensus 469 ~~L~L~~N~-l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p~--------~~~~l~~L~~L~L~~N~l~~~~p~~l~~-- 536 (768)
T 3rgz_A 469 ETLILDFND-LTGEIPS-GLSNCTNLNWISLSNNRLTGEIPK--------WIGRLENLAILKLSNNSFSGNIPAELGD-- 536 (768)
T ss_dssp CEEECCSSC-CCSCCCG-GGGGCTTCCEEECCSSCCCSCCCG--------GGGGCTTCCEEECCSSCCEEECCGGGGG--
T ss_pred eEEEecCCc-ccCcCCH-HHhcCCCCCEEEccCCccCCcCCh--------HHhcCCCCCEEECCCCcccCcCCHHHcC--
Confidence 777776653 3322121 235667777777776654433333 2244567777777776544455554433
Q ss_pred CCCcceEEeccCCCcccccCCCCCCCC
Q 040122 359 FPSLKQVVVRQCPKMKIFSQGLLDTPM 385 (388)
Q Consensus 359 ~~~L~~L~l~~c~~l~~lp~~~~~~~~ 385 (388)
+++|++|++.+|+-...+|..+.....
T Consensus 537 l~~L~~L~Ls~N~l~g~ip~~~~~~~~ 563 (768)
T 3rgz_A 537 CRSLIWLDLNTNLFNGTIPAAMFKQSG 563 (768)
T ss_dssp CTTCCEEECCSSEEESBCCGGGGTTTT
T ss_pred CCCCCEEECCCCccCCcCChHHhcccc
Confidence 677777777777766677766655443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=2.2e-22 Score=205.70 Aligned_cols=252 Identities=15% Similarity=0.018 Sum_probs=120.7
Q ss_pred CCCCccceeeec--------------ccCcceeeecCCCCchhHHHHhhhccCCCCcceEEecCccccc-eeccccccCc
Q 040122 10 SIPKPCKVQVTE--------------KEEGELHHWEGNNLNSTIQKCYDEKIGFLDINRLQLSHFPRLQ-EIWHGQALPV 74 (388)
Q Consensus 10 ~~~~l~~l~~~~--------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~ 74 (388)
.+++|+++.+.. ..+++.++..++.... .+|..+..+++|++|+++++. +. .++... .
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~---~~p~~~~~l~~L~~L~L~~n~-l~~~ip~~~---l 339 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG---AVPPFFGSCSLLESLALSSNN-FSGELPMDT---L 339 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEE---CCCGGGGGCTTCCEEECCSSE-EEEECCHHH---H
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCC---ccchHHhcCCCccEEECCCCc-ccCcCCHHH---H
Confidence 467777777554 1445566666521111 345567778889999988876 43 333221 1
Q ss_pred cccCCccEEEecCCCCCcccCChhhhhcCC-CCcEEEeccccccceecccccccccccccCCcCccccEeecccCccccc
Q 040122 75 RFFNNLAELVVDDSTNMSSAIPANLLRCLN-NLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKR 153 (388)
Q Consensus 75 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~-~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 153 (388)
..+++|++|++++| .+....|.. +.+++ +|++|++++|.....++..... ..+++|+.|+++++.....
T Consensus 340 ~~l~~L~~L~Ls~n-~l~~~~p~~-l~~l~~~L~~L~Ls~N~l~~~~~~~~~~--------~~~~~L~~L~L~~n~l~~~ 409 (768)
T 3rgz_A 340 LKMRGLKVLDLSFN-EFSGELPES-LTNLSASLLTLDLSSNNFSGPILPNLCQ--------NPKNTLQELYLQNNGFTGK 409 (768)
T ss_dssp TTCTTCCEEECCSS-EEEECCCTT-HHHHTTTCSEEECCSSEEEEECCTTTTC--------STTCCCCEEECCSSEEEEE
T ss_pred hcCCCCCEEeCcCC-ccCccccHH-HHhhhcCCcEEEccCCCcCCCcChhhhh--------cccCCccEEECCCCccccc
Confidence 45788888888887 444334444 55665 7888888876543333332110 1144455555554432212
Q ss_pred ccCCCCccccCCCcceEeEecCCCcccccCCcc-eeeeccc-----------CCCccccccCCceEEEec--cccccccc
Q 040122 154 FCNFTGNIIELPKLEYLIIENCPDMETFTSNST-FVLHMTA-----------DNKEPQKLKSEENLLVAN--QIQHLFDE 219 (388)
Q Consensus 154 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~-~~~~l~~-----------~~~~l~~l~~L~~L~l~~--~~~~~~~~ 219 (388)
+ + ..+..+++|++|++++| .++...+... ...+|+. ....+..+++|+.|++++ ..+..+..
T Consensus 410 ~--p-~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 485 (768)
T 3rgz_A 410 I--P-PTLSNCSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485 (768)
T ss_dssp C--C-GGGGGCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred c--C-HHHhcCCCCCEEECcCC-cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH
Confidence 1 1 11344455555555544 2221111110 0000000 000144455555555554 12233444
Q ss_pred ccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccC
Q 040122 220 KVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKC 286 (388)
Q Consensus 220 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c 286 (388)
++.+++|+.|+++++.-...++.. ...+++|++|++++|...+.+|..+..+++|++|+++++
T Consensus 486 l~~l~~L~~L~L~~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 486 LSNCTNLNWISLSNNRLTGEIPKW----IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGG----GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred HhcCCCCCEEEccCCccCCcCChH----HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 445555555555554321122211 144455555555555544455555555555555555543
No 3
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=1.5e-21 Score=181.04 Aligned_cols=274 Identities=16% Similarity=0.176 Sum_probs=174.9
Q ss_pred ccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceeccccc
Q 040122 46 KIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEE 125 (388)
Q Consensus 46 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~ 125 (388)
+..+++|++|+++++. +...+. . ..+++|++|++++| .++.. +. +.++++|++|++++|. +..++.
T Consensus 62 ~~~~~~L~~L~l~~n~-i~~~~~-~----~~l~~L~~L~L~~n-~i~~~-~~--~~~l~~L~~L~l~~n~-i~~~~~--- 127 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQ-ITDISP-L----SNLVKLTNLYIGTN-KITDI-SA--LQNLTNLRELYLNEDN-ISDISP--- 127 (347)
T ss_dssp GGGCTTCCEEECCSSC-CCCCGG-G----TTCTTCCEEECCSS-CCCCC-GG--GTTCTTCSEEECTTSC-CCCCGG---
T ss_pred hhhcCCccEEEccCCc-cccchh-h----hcCCcCCEEEccCC-cccCc-hH--HcCCCcCCEEECcCCc-ccCchh---
Confidence 5567888888888775 554433 2 46788888888887 56653 32 7888888888888853 444433
Q ss_pred ccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCc
Q 040122 126 LSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEE 205 (388)
Q Consensus 126 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~ 205 (388)
...+++|+.|+++++.....+ ..+..+++|++|++.+|. +...+. +..+++|+
T Consensus 128 --------~~~l~~L~~L~l~~n~~~~~~----~~~~~l~~L~~L~l~~~~-~~~~~~--------------~~~l~~L~ 180 (347)
T 4fmz_A 128 --------LANLTKMYSLNLGANHNLSDL----SPLSNMTGLNYLTVTESK-VKDVTP--------------IANLTDLY 180 (347)
T ss_dssp --------GTTCTTCCEEECTTCTTCCCC----GGGTTCTTCCEEECCSSC-CCCCGG--------------GGGCTTCS
T ss_pred --------hccCCceeEEECCCCCCcccc----cchhhCCCCcEEEecCCC-cCCchh--------------hccCCCCC
Confidence 256788888888887665554 225678888888888873 443332 56677888
Q ss_pred eEEEec-ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeec
Q 040122 206 NLLVAN-QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVS 284 (388)
Q Consensus 206 ~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~ 284 (388)
.|++++ ....++. +..+++|+.++++++ .+..+.. ...+++|++|++++|.. ..++. +..+++|++|+++
T Consensus 181 ~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-----~~~~~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~l~ 251 (347)
T 4fmz_A 181 SLSLNYNQIEDISP-LASLTSLHYFTAYVN-QITDITP-----VANMTRLNSLKIGNNKI-TDLSP-LANLSQLTWLEIG 251 (347)
T ss_dssp EEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-----GGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECC
T ss_pred EEEccCCccccccc-ccCCCccceeecccC-CCCCCch-----hhcCCcCCEEEccCCcc-CCCcc-hhcCCCCCEEECC
Confidence 888877 2233322 566778888888774 3444432 16677888888887743 33333 6677788888888
Q ss_pred cCcCcccccchhhhcCccccceeeEccccccchhhcccccccCCccccccccceEecccCCCcceecCCCccccCCCcce
Q 040122 285 KCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTSFCLGNYALEFPSLKQ 364 (388)
Q Consensus 285 ~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 364 (388)
++ .+..++ ....+++|++|++++|. +..++. ...+++|++|++++|..-...+.... .+++|++
T Consensus 252 ~n-~l~~~~---~~~~l~~L~~L~l~~n~-l~~~~~---------~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~ 315 (347)
T 4fmz_A 252 TN-QISDIN---AVKDLTKLKMLNVGSNQ-ISDISV---------LNNLSQLNSLFLNNNQLGNEDMEVIG--GLTNLTT 315 (347)
T ss_dssp SS-CCCCCG---GGTTCTTCCEEECCSSC-CCCCGG---------GGGCTTCSEEECCSSCCCGGGHHHHH--TCTTCSE
T ss_pred CC-ccCCCh---hHhcCCCcCEEEccCCc-cCCChh---------hcCCCCCCEEECcCCcCCCcChhHhh--ccccCCE
Confidence 76 455442 23567788888887774 333311 24467788888887743222222121 2678888
Q ss_pred EEeccCCCcccccCCCCCCCCCC
Q 040122 365 VVVRQCPKMKIFSQGLLDTPMLN 387 (388)
Q Consensus 365 L~l~~c~~l~~lp~~~~~~~~L~ 387 (388)
|++++|+ ++.++. +..+++|+
T Consensus 316 L~L~~n~-l~~~~~-~~~l~~L~ 336 (347)
T 4fmz_A 316 LFLSQNH-ITDIRP-LASLSKMD 336 (347)
T ss_dssp EECCSSS-CCCCGG-GGGCTTCS
T ss_pred EEccCCc-cccccC-hhhhhccc
Confidence 8888876 444443 55566654
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=4.9e-21 Score=190.78 Aligned_cols=97 Identities=16% Similarity=0.121 Sum_probs=58.5
Q ss_pred ccCCCCccceeeec-------------ccCcceeeecCCCCchhHHHH-hhhccCCCCcceEEecCccccceeccccccC
Q 040122 8 ILSIPKPCKVQVTE-------------KEEGELHHWEGNNLNSTIQKC-YDEKIGFLDINRLQLSHFPRLQEIWHGQALP 73 (388)
Q Consensus 8 ~~~~~~l~~l~~~~-------------~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 73 (388)
+..+++|+++.++. .++++.++..++ .+..+ |..+..+++|++|+++++. +...+...
T Consensus 52 ~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n----~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~--- 123 (606)
T 3vq2_A 52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN----PIQSFSPGSFSGLTSLENLVAVETK-LASLESFP--- 123 (606)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC----CCCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSC---
T ss_pred ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC----cccccChhhcCCcccCCEEEccCCc-cccccccc---
Confidence 34556666666543 334455555552 22223 4566677778888887765 44332111
Q ss_pred ccccCCccEEEecCCCCCcc-cCChhhhhcCCCCcEEEeccc
Q 040122 74 VRFFNNLAELVVDDSTNMSS-AIPANLLRCLNNLEWLAVRNC 114 (388)
Q Consensus 74 ~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~l~~L~~L~l~~~ 114 (388)
.+.+++|++|++++| .+.. ..|.. ++++++|++|++++|
T Consensus 124 ~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 124 IGQLITLKKLNVAHN-FIHSCKLPAY-FSNLTNLVHVDLSYN 163 (606)
T ss_dssp CTTCTTCCEEECCSS-CCCCCCCCGG-GGTCTTCCEEECCSS
T ss_pred cCCCCCCCEEeCCCC-cccceechHh-HhhcCCCCEEEccCC
Confidence 256788888888887 4443 22333 788888888888886
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=5.2e-21 Score=177.32 Aligned_cols=279 Identities=17% Similarity=0.197 Sum_probs=205.2
Q ss_pred ccCcceeeecCCCCchhHHHHhhhccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhh
Q 040122 22 KEEGELHHWEGNNLNSTIQKCYDEKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLR 101 (388)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 101 (388)
.++++.++..++ .+..++. +..+++|++|+++++. +...+ .. ..+++|++|++++| .+...++ +.
T Consensus 65 ~~~L~~L~l~~n----~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~----~~l~~L~~L~l~~n-~i~~~~~---~~ 129 (347)
T 4fmz_A 65 LTNLEYLNLNGN----QITDISP-LSNLVKLTNLYIGTNK-ITDIS-AL----QNLTNLRELYLNED-NISDISP---LA 129 (347)
T ss_dssp CTTCCEEECCSS----CCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GG----TTCTTCSEEECTTS-CCCCCGG---GT
T ss_pred cCCccEEEccCC----ccccchh-hhcCCcCCEEEccCCc-ccCch-HH----cCCCcCCEEECcCC-cccCchh---hc
Confidence 445666666663 2222333 6788999999999885 66443 22 57999999999998 5666444 78
Q ss_pred cCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccc
Q 040122 102 CLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETF 181 (388)
Q Consensus 102 ~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 181 (388)
++++|++|++++|.....++. ...+++|++|+++++. +..+. . +..+++|++|++++| .+..+
T Consensus 130 ~l~~L~~L~l~~n~~~~~~~~-----------~~~l~~L~~L~l~~~~-~~~~~---~-~~~l~~L~~L~l~~n-~l~~~ 192 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLSDLSP-----------LSNMTGLNYLTVTESK-VKDVT---P-IANLTDLYSLSLNYN-QIEDI 192 (347)
T ss_dssp TCTTCCEEECTTCTTCCCCGG-----------GTTCTTCCEEECCSSC-CCCCG---G-GGGCTTCSEEECTTS-CCCCC
T ss_pred cCCceeEEECCCCCCcccccc-----------hhhCCCCcEEEecCCC-cCCch---h-hccCCCCCEEEccCC-ccccc
Confidence 999999999999877766544 3678999999999874 44441 1 668999999999998 45554
Q ss_pred cCCcceeeecccCCCccccccCCceEEEec-ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEe
Q 040122 182 TSNSTFVLHMTADNKEPQKLKSEENLLVAN-QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEIS 260 (388)
Q Consensus 182 ~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~ 260 (388)
+. +..+++|+.+++++ ....... +..+++|++|+++++ .++.++. ...+++|++|+++
T Consensus 193 ~~--------------~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n-~l~~~~~-----~~~l~~L~~L~l~ 251 (347)
T 4fmz_A 193 SP--------------LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNN-KITDLSP-----LANLSQLTWLEIG 251 (347)
T ss_dssp GG--------------GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-----GTTCTTCCEEECC
T ss_pred cc--------------ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCC-ccCCCcc-----hhcCCCCCEEECC
Confidence 42 56789999999998 3333322 678899999999996 4555543 2778999999999
Q ss_pred cCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEccccccchhhcccccccCCccccccccceEe
Q 040122 261 ECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLG 340 (388)
Q Consensus 261 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 340 (388)
+|. +..+ ..+..+++|++|++++| .+.+++ ....+++|++|++++|......+. ....+++|++|+
T Consensus 252 ~n~-l~~~-~~~~~l~~L~~L~l~~n-~l~~~~---~~~~l~~L~~L~L~~n~l~~~~~~--------~l~~l~~L~~L~ 317 (347)
T 4fmz_A 252 TNQ-ISDI-NAVKDLTKLKMLNVGSN-QISDIS---VLNNLSQLNSLFLNNNQLGNEDME--------VIGGLTNLTTLF 317 (347)
T ss_dssp SSC-CCCC-GGGTTCTTCCEEECCSS-CCCCCG---GGGGCTTCSEEECCSSCCCGGGHH--------HHHTCTTCSEEE
T ss_pred CCc-cCCC-hhHhcCCCcCEEEccCC-ccCCCh---hhcCCCCCCEEECcCCcCCCcChh--------HhhccccCCEEE
Confidence 985 4444 35778899999999997 566653 246789999999999964433322 224578999999
Q ss_pred cccCCCcceecCCCccccCCCcceEEeccCC
Q 040122 341 LDCLPSLTSFCLGNYALEFPSLKQVVVRQCP 371 (388)
Q Consensus 341 l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 371 (388)
+++++ ++.++. . ..+++|++|++++|+
T Consensus 318 L~~n~-l~~~~~-~--~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 318 LSQNH-ITDIRP-L--ASLSKMDSADFANQV 344 (347)
T ss_dssp CCSSS-CCCCGG-G--GGCTTCSEESSSCC-
T ss_pred ccCCc-cccccC-h--hhhhccceeehhhhc
Confidence 99986 555433 2 238999999999987
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=4.5e-20 Score=183.79 Aligned_cols=128 Identities=18% Similarity=0.084 Sum_probs=61.5
Q ss_pred hhhccccEEEEecCCCcccccC-CccccCCCCEEeeccCcCcccccchhhhcCccccceeeEccccccchhhcccccccC
Q 040122 249 KAFANLERLEISECSKLQKLVP-PSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEA 327 (388)
Q Consensus 249 ~~~~~L~~L~i~~~~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 327 (388)
..+++|++|++++|......+. .+..+++|++|++++| .+...... ....+++|++|++++|...+......
T Consensus 397 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~----- 469 (606)
T 3t6q_A 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQ-LFDGLPALQHLNLQGNHFPKGNIQKT----- 469 (606)
T ss_dssp TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC-CCBTTCTT-TTTTCTTCCEEECTTCBCGGGEECSS-----
T ss_pred cCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC-ccCCcCHH-HHhCCCCCCEEECCCCCCCccccccc-----
Confidence 3344555555555433322222 2445555555555554 23222211 22445666666666554322111100
Q ss_pred CccccccccceEecccCCCcceec-CCCccccCCCcceEEeccCCCcccccCCCCCCCCC
Q 040122 328 KDCNVFKELEYLGLDCLPSLTSFC-LGNYALEFPSLKQVVVRQCPKMKIFSQGLLDTPML 386 (388)
Q Consensus 328 ~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L 386 (388)
.....+++|++|++++|. ++.+. .... .+++|++|++++|.-....|..+.++++|
T Consensus 470 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 470 NSLQTLGRLEILVLSFCD-LSSIDQHAFT--SLKMMNHVDLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp CGGGGCTTCCEEECTTSC-CCEECTTTTT--TCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred hhhccCCCccEEECCCCc-cCccChhhhc--cccCCCEEECCCCccCcCChhHhCccccc
Confidence 012445677777777763 44442 2222 26777777777776555556666655544
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=3.8e-20 Score=184.33 Aligned_cols=278 Identities=13% Similarity=0.048 Sum_probs=151.2
Q ss_pred CccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccCCC
Q 040122 79 NLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFT 158 (388)
Q Consensus 79 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 158 (388)
+|++|++++| .+..+++. .++++++|++|++++| .+..+|.. +..+++|++|+++++. +..+ +.
T Consensus 255 ~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~lp~~----------l~~l~~L~~L~l~~n~-l~~~--~~ 318 (606)
T 3t6q_A 255 SVESINLQKH-YFFNISSN-TFHCFSGLQELDLTAT-HLSELPSG----------LVGLSTLKKLVLSANK-FENL--CQ 318 (606)
T ss_dssp EEEEEECTTC-CCSSCCTT-TTTTCTTCSEEECTTS-CCSCCCSS----------CCSCTTCCEEECTTCC-CSBG--GG
T ss_pred ceeEEEeecC-ccCccCHH-HhccccCCCEEeccCC-ccCCCChh----------hcccccCCEEECccCC-cCcC--ch
Confidence 3444555544 33443322 2556666666666664 34444332 2345556666665542 2222 11
Q ss_pred CccccCCCcceEeEecCCCcccccCCcc-eeeeccc-------------CCCccccccCCceEEEec-cc-ccccccccC
Q 040122 159 GNIIELPKLEYLIIENCPDMETFTSNST-FVLHMTA-------------DNKEPQKLKSEENLLVAN-QI-QHLFDEKVA 222 (388)
Q Consensus 159 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~-~~~~l~~-------------~~~~l~~l~~L~~L~l~~-~~-~~~~~~~~~ 222 (388)
..+..+++|++|++.+|.....++.... ...++++ ....+..+++|+.|++++ .. ...+..++.
T Consensus 319 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 398 (606)
T 3t6q_A 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398 (606)
T ss_dssp GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT
T ss_pred hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC
Confidence 1144555555555555432212222110 0001111 011366777888888776 22 233455667
Q ss_pred CCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccCcCcccc--cchhhhcC
Q 040122 223 FPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINV--LTLSASKN 300 (388)
Q Consensus 223 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~--~~~~~~~~ 300 (388)
+++|+.|+++++. +....... ....+++|++|++++|......+..+..+++|++|+++++. +... +.......
T Consensus 399 l~~L~~L~l~~n~-l~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~ 474 (606)
T 3t6q_A 399 CPQLELLDLAFTR-LKVKDAQS--PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQT 474 (606)
T ss_dssp CTTCSEEECTTCC-EECCTTCC--TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGG
T ss_pred CccCCeEECCCCc-CCCcccch--hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC-CCccccccchhhcc
Confidence 7888888887753 33322111 11667889999998887666666677788899999998874 3331 22223467
Q ss_pred ccccceeeEccccccchhhcccccccCCccccccccceEecccCCCcceecCCCccccCCCcceEEeccCCCcccccCCC
Q 040122 301 LVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGL 380 (388)
Q Consensus 301 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~ 380 (388)
+++|++|++++|...+..+. ....+++|++|+++++.--...+.... .+++| +|++++|.-....|..+
T Consensus 475 l~~L~~L~Ls~n~l~~~~~~--------~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~l~~L-~L~L~~N~l~~~~~~~~ 543 (606)
T 3t6q_A 475 LGRLEILVLSFCDLSSIDQH--------AFTSLKMMNHVDLSHNRLTSSSIEALS--HLKGI-YLNLASNHISIILPSLL 543 (606)
T ss_dssp CTTCCEEECTTSCCCEECTT--------TTTTCTTCCEEECCSSCCCGGGGGGGT--TCCSC-EEECCSSCCCCCCGGGH
T ss_pred CCCccEEECCCCccCccChh--------hhccccCCCEEECCCCccCcCChhHhC--ccccc-EEECcCCcccccCHhhc
Confidence 88899999988854322222 224568888999888743333333332 26778 88888876544444444
Q ss_pred CCCCCCC
Q 040122 381 LDTPMLN 387 (388)
Q Consensus 381 ~~~~~L~ 387 (388)
..+++|+
T Consensus 544 ~~l~~L~ 550 (606)
T 3t6q_A 544 PILSQQR 550 (606)
T ss_dssp HHHHTSS
T ss_pred ccCCCCC
Confidence 5555543
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=2e-21 Score=194.34 Aligned_cols=301 Identities=15% Similarity=0.139 Sum_probs=168.8
Q ss_pred HHhhhccCCCCcceEEecCccccce------------------eccccccCcc--ccCCccEEEecCCCCCcccCChhhh
Q 040122 41 KCYDEKIGFLDINRLQLSHFPRLQE------------------IWHGQALPVR--FFNNLAELVVDDSTNMSSAIPANLL 100 (388)
Q Consensus 41 ~l~~~~~~~~~L~~L~l~~~~~l~~------------------~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~ 100 (388)
.+|..+..+++|++|+++++. +.. ++... + .+++|++|++++|..... .|.. +
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l----~~~~l~~L~~L~L~~n~l~~~-~p~~-l 269 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDL----KWDNLKDLTDVEVYNCPNLTK-LPTF-L 269 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCC----CGGGCTTCCEEEEECCTTCSS-CCTT-T
T ss_pred cCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhh----hhcccCCCCEEEecCCcCCcc-ChHH-H
Confidence 377888899999999999887 664 34333 5 799999999999954454 4433 8
Q ss_pred hcCCCCcEEEeccccccc--eeccccc-ccccccccCCcCccccEeecccCcccccccCCC-CccccCCCcceEeEecCC
Q 040122 101 RCLNNLEWLAVRNCDSLE--EVLHLEE-LSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFT-GNIIELPKLEYLIIENCP 176 (388)
Q Consensus 101 ~~l~~L~~L~l~~~~~l~--~i~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~l~~L~~L~l~~c~ 176 (388)
+++++|++|++++|..+. .+|..-+ +. ....+++|++|+++++. ++.+ +. ..++.+++|++|+++++
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~-----~~~~l~~L~~L~L~~n~-l~~i--p~~~~l~~l~~L~~L~L~~N- 340 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALA-----DAPVGEKIQIIYIGYNN-LKTF--PVETSLQKMKKLGMLECLYN- 340 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHH-----HSGGGGTCCEEECCSSC-CSSC--CCHHHHTTCTTCCEEECCSC-
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhh-----ccccCCCCCEEECCCCc-CCcc--CchhhhccCCCCCEEeCcCC-
Confidence 999999999999986344 3544210 00 01235899999998874 4454 33 13778899999999987
Q ss_pred Ccc-cccCCcceeeecccCCCccccccCCceEEEec-ccccccccccCCCC-cceEEecCCCCcceecccCchhHhhhcc
Q 040122 177 DME-TFTSNSTFVLHMTADNKEPQKLKSEENLLVAN-QIQHLFDEKVAFPQ-LGNLRLSGLHKVQHLWKENDESNKAFAN 253 (388)
Q Consensus 177 ~l~-~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 253 (388)
.++ .++ . ++.+++|+.|++++ ....++..++.+++ |+.|+++++. ++.++..... ..+++
T Consensus 341 ~l~g~ip-~-------------~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~--~~l~~ 403 (636)
T 4eco_A 341 QLEGKLP-A-------------FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDA--KSVSV 403 (636)
T ss_dssp CCEEECC-C-------------CEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCT--TCSSC
T ss_pred cCccchh-h-------------hCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc-Ccccchhhhh--cccCc
Confidence 455 565 3 44455555555554 22344444444444 5555555432 3333321100 11224
Q ss_pred ccEEEEecCCCcccccCCcc-------c------------------------cCCCCEEeeccCcCcccccchhhh----
Q 040122 254 LERLEISECSKLQKLVPPSW-------H------------------------LENLEALKVSKCHELINVLTLSAS---- 298 (388)
Q Consensus 254 L~~L~i~~~~~~~~~~~~~~-------~------------------------~~~L~~L~l~~c~~l~~~~~~~~~---- 298 (388)
|++|++++|.....+|..+. . +++|++|+++++ .++.++...+.
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~ 482 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENE 482 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTE
T ss_pred cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccc
Confidence 44444444433333333333 3 455555555543 23333221110
Q ss_pred --cCccccceeeEccccccchhhcccccccCCccc--cccccceEecccCCCcceecCCCccccCCCcceEEec------
Q 040122 299 --KNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCN--VFKELEYLGLDCLPSLTSFCLGNYALEFPSLKQVVVR------ 368 (388)
Q Consensus 299 --~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~------ 368 (388)
+++++|++|++++|. +..++. ... .+++|++|+++++ .++.++..... +++|++|+++
T Consensus 483 ~~~~l~~L~~L~Ls~N~-l~~lp~--------~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~--l~~L~~L~Ls~N~~ls 550 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNK-LTKLSD--------DFRATTLPYLVGIDLSYN-SFSKFPTQPLN--SSTLKGFGIRNQRDAQ 550 (636)
T ss_dssp ECTTGGGCCEEECCSSC-CCBCCG--------GGSTTTCTTCCEEECCSS-CCSSCCCGGGG--CSSCCEEECCSCBCTT
T ss_pred cccccCCccEEECcCCc-CCccCh--------hhhhccCCCcCEEECCCC-CCCCcChhhhc--CCCCCEEECCCCcccc
Confidence 112255555555543 222222 111 4567777777775 34445554433 6777777774
Q ss_pred cCCCcccccCCCCCCCCCC
Q 040122 369 QCPKMKIFSQGLLDTPMLN 387 (388)
Q Consensus 369 ~c~~l~~lp~~~~~~~~L~ 387 (388)
++...+.+|.++.++++|+
T Consensus 551 ~N~l~~~~p~~l~~l~~L~ 569 (636)
T 4eco_A 551 GNRTLREWPEGITLCPSLT 569 (636)
T ss_dssp CCBCCCCCCTTGGGCSSCC
T ss_pred cCcccccChHHHhcCCCCC
Confidence 3444556777777777665
No 9
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=4.4e-20 Score=178.07 Aligned_cols=133 Identities=16% Similarity=0.199 Sum_probs=72.1
Q ss_pred ccCcceeeecCCCCchhHHHHhhhccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhh
Q 040122 22 KEEGELHHWEGNNLNSTIQKCYDEKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLR 101 (388)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 101 (388)
.++++.+++.++ .+..++. +..+++|++|+++++. +..... . ..+++|++|++++| .++..++ +.
T Consensus 67 l~~L~~L~Ls~n----~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~----~~l~~L~~L~L~~n-~l~~~~~---~~ 131 (466)
T 1o6v_A 67 LNNLTQINFSNN----QLTDITP-LKNLTKLVDILMNNNQ-IADITP-L----ANLTNLTGLTLFNN-QITDIDP---LK 131 (466)
T ss_dssp CTTCCEEECCSS----CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-G----TTCTTCCEEECCSS-CCCCCGG---GT
T ss_pred hcCCCEEECCCC----ccCCchh-hhccccCCEEECCCCc-cccChh-h----cCCCCCCEEECCCC-CCCCChH---Hc
Confidence 344555666652 1222233 5667888888887765 443332 2 56788888888887 5666443 67
Q ss_pred cCCCCcEEEeccccccceeccccccc----------ccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEe
Q 040122 102 CLNNLEWLAVRNCDSLEEVLHLEELS----------AKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLI 171 (388)
Q Consensus 102 ~l~~L~~L~l~~~~~l~~i~~~~~~~----------~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~ 171 (388)
++++|++|++++|. +..++....+. ......+..+++|+.|+++++. +..+ ..+..+++|++|+
T Consensus 132 ~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~----~~l~~l~~L~~L~ 205 (466)
T 1o6v_A 132 NLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDI----SVLAKLTNLESLI 205 (466)
T ss_dssp TCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCC----GGGGGCTTCSEEE
T ss_pred CCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCC----hhhccCCCCCEEE
Confidence 88888888888763 33333221110 0000113345556666665543 2332 1144556666666
Q ss_pred EecC
Q 040122 172 IENC 175 (388)
Q Consensus 172 l~~c 175 (388)
+.+|
T Consensus 206 l~~n 209 (466)
T 1o6v_A 206 ATNN 209 (466)
T ss_dssp CCSS
T ss_pred ecCC
Confidence 6655
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=3.7e-21 Score=192.38 Aligned_cols=75 Identities=9% Similarity=0.167 Sum_probs=43.4
Q ss_pred Hhhhcc--CCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcc-cCChhhhhcC------CCCcEEEec
Q 040122 42 CYDEKI--GFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSS-AIPANLLRCL------NNLEWLAVR 112 (388)
Q Consensus 42 l~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~l------~~L~~L~l~ 112 (388)
+|..+. .+++|++|+++++.-...++... ..+++|++|++++|..++. ..|.. ++++ ++|++|+++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~ 313 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL----KALPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIG 313 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTT----TTCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHH----hcCCCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECC
Confidence 677777 77888888888775333333333 5567777777777642443 23332 3333 666666666
Q ss_pred cccccceecc
Q 040122 113 NCDSLEEVLH 122 (388)
Q Consensus 113 ~~~~l~~i~~ 122 (388)
+|. +..+|.
T Consensus 314 ~n~-l~~ip~ 322 (636)
T 4eco_A 314 YNN-LKTFPV 322 (636)
T ss_dssp SSC-CSSCCC
T ss_pred CCc-CCccCc
Confidence 643 334443
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=2.4e-20 Score=179.23 Aligned_cols=140 Identities=16% Similarity=0.112 Sum_probs=86.0
Q ss_pred CcceeeecCCCCchhHHHH-hhhccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhc
Q 040122 24 EGELHHWEGNNLNSTIQKC-YDEKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRC 102 (388)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 102 (388)
+++.++..++ .+..+ +..+..+++|++|+++++.-...+.... ...+++|++|++++| .+....+.. +++
T Consensus 31 ~l~~L~Ls~n----~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~---~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~ 101 (455)
T 3v47_A 31 HVNYVDLSLN----SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNT---FRGLSSLIILKLDYN-QFLQLETGA-FNG 101 (455)
T ss_dssp TCCEEECCSS----CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTT---TTTCTTCCEEECTTC-TTCEECTTT-TTT
T ss_pred ccCEEEecCC----ccCcCChhHhccCccccEEECcCCcccceECccc---ccccccCCEEeCCCC-ccCccChhh-ccC
Confidence 3555555552 22222 4566778888888888775222332221 245788889998888 455544443 788
Q ss_pred CCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCccccc
Q 040122 103 LNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFT 182 (388)
Q Consensus 103 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 182 (388)
+++|++|++++|..-+.++.... +..+++|++|+++++. +..+. +...+..+++|++|++.++ .++...
T Consensus 102 l~~L~~L~L~~n~l~~~~~~~~~--------~~~l~~L~~L~L~~n~-l~~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~ 170 (455)
T 3v47_A 102 LANLEVLTLTQCNLDGAVLSGNF--------FKPLTSLEMLVLRDNN-IKKIQ-PASFFLNMRRFHVLDLTFN-KVKSIC 170 (455)
T ss_dssp CTTCCEEECTTSCCBTHHHHSST--------TTTCTTCCEEECCSSB-CCSCC-CCGGGGGCTTCCEEECTTC-CBSCCC
T ss_pred cccCCEEeCCCCCCCccccCccc--------ccCcccCCEEECCCCc-cCccC-cccccCCCCcccEEeCCCC-cccccC
Confidence 88899999888753322222111 3568889999998774 34431 1111567889999999887 455443
Q ss_pred C
Q 040122 183 S 183 (388)
Q Consensus 183 ~ 183 (388)
.
T Consensus 171 ~ 171 (455)
T 3v47_A 171 E 171 (455)
T ss_dssp T
T ss_pred h
Confidence 3
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=5.5e-20 Score=177.91 Aligned_cols=278 Identities=18% Similarity=0.165 Sum_probs=135.7
Q ss_pred hccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccc
Q 040122 45 EKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLE 124 (388)
Q Consensus 45 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~ 124 (388)
.+..+++|++|+++++. +..+.... ...+++|++|++++| .++.+++ ..+.++++|++|++++|. +..+++..
T Consensus 51 ~~~~l~~L~~L~L~~n~-i~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~ 123 (477)
T 2id5_A 51 EFASFPHLEELELNENI-VSAVEPGA---FNNLFNLRTLGLRSN-RLKLIPL-GVFTGLSNLTKLDISENK-IVILLDYM 123 (477)
T ss_dssp TTTTCTTCCEEECTTSC-CCEECTTT---TTTCTTCCEEECCSS-CCCSCCT-TSSTTCTTCCEEECTTSC-CCEECTTT
T ss_pred HccCCCCCCEEECCCCc-cCEeChhh---hhCCccCCEEECCCC-cCCccCc-ccccCCCCCCEEECCCCc-cccCChhH
Confidence 34455566666665543 43322111 134556666666555 3444332 224555666666666542 22221110
Q ss_pred cccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCC
Q 040122 125 ELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSE 204 (388)
Q Consensus 125 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L 204 (388)
+..+++|++|+++++. +..+ ....+..+++|++|++.+| .++.++... +..+++|
T Consensus 124 ---------~~~l~~L~~L~l~~n~-l~~~--~~~~~~~l~~L~~L~l~~n-~l~~~~~~~------------l~~l~~L 178 (477)
T 2id5_A 124 ---------FQDLYNLKSLEVGDND-LVYI--SHRAFSGLNSLEQLTLEKC-NLTSIPTEA------------LSHLHGL 178 (477)
T ss_dssp ---------TTTCTTCCEEEECCTT-CCEE--CTTSSTTCTTCCEEEEESC-CCSSCCHHH------------HTTCTTC
T ss_pred ---------ccccccCCEEECCCCc-ccee--ChhhccCCCCCCEEECCCC-cCcccChhH------------hcccCCC
Confidence 2445566666665542 3333 1122445566666666665 344333221 4556666
Q ss_pred ceEEEec-ccccc-cccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCccccc-CCccccCCCCEE
Q 040122 205 ENLLVAN-QIQHL-FDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLV-PPSWHLENLEAL 281 (388)
Q Consensus 205 ~~L~l~~-~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~-~~~~~~~~L~~L 281 (388)
+.|++++ ....+ ...+..+++|+.|++++++.+..++... ....+|++|++++|. +..++ ..+..+++|++|
T Consensus 179 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 253 (477)
T 2id5_A 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC----LYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFL 253 (477)
T ss_dssp CEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT----TTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEE
T ss_pred cEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc----ccCccccEEECcCCc-ccccCHHHhcCccccCee
Confidence 6666665 22222 2234455666666666665555555433 223366666666653 33333 234556666666
Q ss_pred eeccCcCcccccchhhhcCccccceeeEccccccchhhcccccccCCccccccccceEecccCCCcceecCCCccccCCC
Q 040122 282 KVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTSFCLGNYALEFPS 361 (388)
Q Consensus 282 ~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 361 (388)
+++++ .+..++.. ....+++|++|++++|......+. ....+++|++|+++++ .++.++.... ..+++
T Consensus 254 ~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~--------~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~ 321 (477)
T 2id5_A 254 NLSYN-PISTIEGS-MLHELLRLQEIQLVGGQLAVVEPY--------AFRGLNYLRVLNVSGN-QLTTLEESVF-HSVGN 321 (477)
T ss_dssp ECCSS-CCCEECTT-SCTTCTTCCEEECCSSCCSEECTT--------TBTTCTTCCEEECCSS-CCSCCCGGGB-SCGGG
T ss_pred ECCCC-cCCccChh-hccccccCCEEECCCCccceECHH--------HhcCcccCCEEECCCC-cCceeCHhHc-CCCcc
Confidence 66664 34443322 224566666666666532221111 1234566777777665 3444443321 12566
Q ss_pred cceEEeccCC
Q 040122 362 LKQVVVRQCP 371 (388)
Q Consensus 362 L~~L~l~~c~ 371 (388)
|++|++.+++
T Consensus 322 L~~L~l~~N~ 331 (477)
T 2id5_A 322 LETLILDSNP 331 (477)
T ss_dssp CCEEECCSSC
T ss_pred cCEEEccCCC
Confidence 7777776654
No 13
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=2.3e-20 Score=180.51 Aligned_cols=297 Identities=19% Similarity=0.182 Sum_probs=212.6
Q ss_pred HHHhhhccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccce
Q 040122 40 QKCYDEKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEE 119 (388)
Q Consensus 40 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 119 (388)
..+|..+ .++++.|+++++. +..+.... ...+++|++|++++| .+....+.. +.++++|++|++++| .+..
T Consensus 24 ~~ip~~~--~~~l~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~ 94 (477)
T 2id5_A 24 VAVPEGI--PTETRLLDLGKNR-IKTLNQDE---FASFPHLEELELNEN-IVSAVEPGA-FNNLFNLRTLGLRSN-RLKL 94 (477)
T ss_dssp SSCCSCC--CTTCSEEECCSSC-CCEECTTT---TTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCCS
T ss_pred CcCCCCC--CCCCcEEECCCCc-cceECHhH---ccCCCCCCEEECCCC-ccCEeChhh-hhCCccCCEEECCCC-cCCc
Confidence 3455443 3689999999876 66554322 256899999999998 677755544 889999999999995 4555
Q ss_pred ecccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccc
Q 040122 120 VLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQ 199 (388)
Q Consensus 120 i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~ 199 (388)
++.. .+..+++|++|+++++. +..+ ....+..+++|++|++.++ .++...... +.
T Consensus 95 ~~~~---------~~~~l~~L~~L~Ls~n~-i~~~--~~~~~~~l~~L~~L~l~~n-~l~~~~~~~------------~~ 149 (477)
T 2id5_A 95 IPLG---------VFTGLSNLTKLDISENK-IVIL--LDYMFQDLYNLKSLEVGDN-DLVYISHRA------------FS 149 (477)
T ss_dssp CCTT---------SSTTCTTCCEEECTTSC-CCEE--CTTTTTTCTTCCEEEECCT-TCCEECTTS------------ST
T ss_pred cCcc---------cccCCCCCCEEECCCCc-cccC--ChhHccccccCCEEECCCC-ccceeChhh------------cc
Confidence 5432 13568999999999874 4444 2233678999999999996 566665543 78
Q ss_pred cccCCceEEEec-cccccc-ccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCC
Q 040122 200 KLKSEENLLVAN-QIQHLF-DEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLEN 277 (388)
Q Consensus 200 ~l~~L~~L~l~~-~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~ 277 (388)
.+++|+.|++++ ....++ ..+..+++|+.|+++++ .+..++...+ ..+++|+.|++++|.....++.......+
T Consensus 150 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL-NINAIRDYSF---KRLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp TCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC-CCCEECTTCS---CSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred CCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC-cCcEeChhhc---ccCcccceeeCCCCccccccCcccccCcc
Confidence 899999999998 333333 34667899999999985 4666655433 67889999999999888888887777789
Q ss_pred CCEEeeccCcCcccccchhhhcCccccceeeEccccccchhhcccccccCCccccccccceEecccCCCcceecCCCccc
Q 040122 278 LEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTSFCLGNYAL 357 (388)
Q Consensus 278 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 357 (388)
|++|+++++ .++.++.. ....+++|+.|++++|. +..++. .....+++|++|++.++. ++.+..... .
T Consensus 226 L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~-------~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~ 293 (477)
T 2id5_A 226 LTSLSITHC-NLTAVPYL-AVRHLVYLRFLNLSYNP-ISTIEG-------SMLHELLRLQEIQLVGGQ-LAVVEPYAF-R 293 (477)
T ss_dssp CSEEEEESS-CCCSCCHH-HHTTCTTCCEEECCSSC-CCEECT-------TSCTTCTTCCEEECCSSC-CSEECTTTB-T
T ss_pred ccEEECcCC-cccccCHH-HhcCccccCeeECCCCc-CCccCh-------hhccccccCCEEECCCCc-cceECHHHh-c
Confidence 999999987 56666533 34688999999999885 333322 122456899999999874 555533221 2
Q ss_pred cCCCcceEEeccCCCcccccCC-CCCCCCCC
Q 040122 358 EFPSLKQVVVRQCPKMKIFSQG-LLDTPMLN 387 (388)
Q Consensus 358 ~~~~L~~L~l~~c~~l~~lp~~-~~~~~~L~ 387 (388)
.+++|++|++++|. ++.+|.. +.++++|+
T Consensus 294 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~ 323 (477)
T 2id5_A 294 GLNYLRVLNVSGNQ-LTTLEESVFHSVGNLE 323 (477)
T ss_dssp TCTTCCEEECCSSC-CSCCCGGGBSCGGGCC
T ss_pred CcccCCEEECCCCc-CceeCHhHcCCCcccC
Confidence 37999999999874 6666643 35555554
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=1.3e-20 Score=192.60 Aligned_cols=115 Identities=14% Similarity=0.090 Sum_probs=54.7
Q ss_pred Hhhhcc--CCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcc-cCChhhhhc-------CCCCcEEEe
Q 040122 42 CYDEKI--GFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSS-AIPANLLRC-------LNNLEWLAV 111 (388)
Q Consensus 42 l~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~-------l~~L~~L~l 111 (388)
+|..+. .+++|++|+++++.-...++... ..+++|++|++++|..++. ..|.. +++ +++|++|++
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l----~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~L 555 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFL----YDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYM 555 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGG----GGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEEC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHH----hCCCCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEe
Confidence 566655 66777777776665333333222 4566666666666632443 22222 222 336666666
Q ss_pred ccccccceecccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecC
Q 040122 112 RNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENC 175 (388)
Q Consensus 112 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 175 (388)
++|. +..+|.... +..+++|+.|+++++. +..+ + .++.+++|++|+++++
T Consensus 556 s~N~-L~~ip~~~~--------l~~L~~L~~L~Ls~N~-l~~l--p--~~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 556 GYNN-LEEFPASAS--------LQKMVKLGLLDCVHNK-VRHL--E--AFGTNVKLTDLKLDYN 605 (876)
T ss_dssp CSSC-CCBCCCHHH--------HTTCTTCCEEECTTSC-CCBC--C--CCCTTSEESEEECCSS
T ss_pred eCCc-CCccCChhh--------hhcCCCCCEEECCCCC-cccc--h--hhcCCCcceEEECcCC
Confidence 6643 234443000 2345555555555442 2233 1 1444555555555554
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=5.1e-20 Score=183.39 Aligned_cols=54 Identities=13% Similarity=-0.006 Sum_probs=34.5
Q ss_pred ccccccceEecccCCCcceec-CCCccccCCCcceEEeccCCCcccccCCCCCCCCCC
Q 040122 331 NVFKELEYLGLDCLPSLTSFC-LGNYALEFPSLKQVVVRQCPKMKIFSQGLLDTPMLN 387 (388)
Q Consensus 331 ~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~ 387 (388)
..+++|++|+++++. ++.+. .... .+++|++|++++|+-....|..+.++++|+
T Consensus 470 ~~l~~L~~L~Ls~n~-l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 524 (606)
T 3vq2_A 470 ANTTNLTFLDLSKCQ-LEQISWGVFD--TLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524 (606)
T ss_dssp TTCTTCCEEECTTSC-CCEECTTTTT--TCTTCCEEECCSSCCSCEEGGGTTTCTTCC
T ss_pred ccCCCCCEEECCCCc-CCccChhhhc--ccccCCEEECCCCcCCCcCHHHccCCCcCC
Confidence 345777777777763 44433 2222 267888888888765555577777777765
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=3.9e-20 Score=174.27 Aligned_cols=280 Identities=15% Similarity=0.149 Sum_probs=167.0
Q ss_pred cCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccc
Q 040122 47 IGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEEL 126 (388)
Q Consensus 47 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~ 126 (388)
..+++|++|+++++. +..++... ...+++|++|++++| .++..++.. ++++++|++|++++| .+..++...
T Consensus 66 ~~l~~L~~L~L~~n~-i~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~l~~~~-- 136 (390)
T 3o6n_A 66 DSFRQVELLNLNDLQ-IEEIDTYA---FAYAHTIQKLYMGFN-AIRYLPPHV-FQNVPLLTVLVLERN-DLSSLPRGI-- 136 (390)
T ss_dssp HHCCCCSEEECTTSC-CCEECTTT---TTTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCCCCTTT--
T ss_pred cccccCcEEECCCCc-ccccChhh---ccCCCCcCEEECCCC-CCCcCCHHH-hcCCCCCCEEECCCC-ccCcCCHHH--
Confidence 457888888888775 65544322 156788888888888 566644433 778888888888885 455554321
Q ss_pred cccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcce-eeecccCC---Ccccccc
Q 040122 127 SAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTF-VLHMTADN---KEPQKLK 202 (388)
Q Consensus 127 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~-~~~l~~~~---~~l~~l~ 202 (388)
+..+++|++|+++++. +..+ +...+..+++|++|+++++ .++..+....+ +..+...+ ..+...+
T Consensus 137 -------~~~l~~L~~L~L~~n~-l~~~--~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 205 (390)
T 3o6n_A 137 -------FHNTPKLTTLSMSNNN-LERI--EDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAIPI 205 (390)
T ss_dssp -------TTTCTTCCEEECCSSC-CCBC--CTTTTSSCTTCCEEECCSS-CCSBCCGGGCTTCSEEECCSSCCSEEECCS
T ss_pred -------hcCCCCCcEEECCCCc-cCcc--ChhhccCCCCCCEEECCCC-cCCccccccccccceeecccccccccCCCC
Confidence 3567888888888764 4444 2233567888888888886 45544321110 00011000 1122334
Q ss_pred CCceEEEec-ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEE
Q 040122 203 SEENLLVAN-QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEAL 281 (388)
Q Consensus 203 ~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L 281 (388)
+|+.|++++ ....++. ..+++|+.|+++++ .++..+ ....+++|++|++++|......+..+..+++|++|
T Consensus 206 ~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n-~l~~~~-----~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 277 (390)
T 3o6n_A 206 AVEELDASHNSINVVRG--PVNVELTILKLQHN-NLTDTA-----WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 277 (390)
T ss_dssp SCSEEECCSSCCCEEEC--CCCSSCCEEECCSS-CCCCCG-----GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred cceEEECCCCeeeeccc--cccccccEEECCCC-CCcccH-----HHcCCCCccEEECCCCcCCCcChhHccccccCCEE
Confidence 555555555 2222222 22456777777764 344332 22667778888887776554445566777788888
Q ss_pred eeccCcCcccccchhhhcCccccceeeEccccccchhhcccccccCCccccccccceEecccCCCcceecCCCccccCCC
Q 040122 282 KVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTSFCLGNYALEFPS 361 (388)
Q Consensus 282 ~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 361 (388)
+++++ .++.++.. ...+++|++|++++|. +..++. ....+++|++|++.+++ ++.++.+. +++
T Consensus 278 ~L~~n-~l~~~~~~--~~~l~~L~~L~L~~n~-l~~~~~--------~~~~l~~L~~L~L~~N~-i~~~~~~~----~~~ 340 (390)
T 3o6n_A 278 YISNN-RLVALNLY--GQPIPTLKVLDLSHNH-LLHVER--------NQPQFDRLENLYLDHNS-IVTLKLST----HHT 340 (390)
T ss_dssp ECCSS-CCCEEECS--SSCCTTCCEEECCSSC-CCCCGG--------GHHHHTTCSEEECCSSC-CCCCCCCT----TCC
T ss_pred ECCCC-cCcccCcc--cCCCCCCCEEECCCCc-ceecCc--------cccccCcCCEEECCCCc-cceeCchh----hcc
Confidence 88775 45554322 2567778888887774 333332 12446778888887764 55554333 678
Q ss_pred cceEEeccCC
Q 040122 362 LKQVVVRQCP 371 (388)
Q Consensus 362 L~~L~l~~c~ 371 (388)
|++|++.+++
T Consensus 341 L~~L~l~~N~ 350 (390)
T 3o6n_A 341 LKNLTLSHND 350 (390)
T ss_dssp CSEEECCSSC
T ss_pred CCEEEcCCCC
Confidence 8888887765
No 17
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=3.9e-20 Score=169.99 Aligned_cols=224 Identities=16% Similarity=0.193 Sum_probs=112.4
Q ss_pred CCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccc
Q 040122 49 FLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSA 128 (388)
Q Consensus 49 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~ 128 (388)
.++++.|+++++. +..++... ..+++|++|++++| .+..++. . ++++++|++|++++| .+..+|..
T Consensus 80 ~~~l~~L~L~~n~-l~~lp~~l----~~l~~L~~L~L~~n-~l~~lp~-~-~~~l~~L~~L~Ls~n-~l~~lp~~----- 145 (328)
T 4fcg_A 80 QPGRVALELRSVP-LPQFPDQA----FRLSHLQHMTIDAA-GLMELPD-T-MQQFAGLETLTLARN-PLRALPAS----- 145 (328)
T ss_dssp STTCCEEEEESSC-CSSCCSCG----GGGTTCSEEEEESS-CCCCCCS-C-GGGGTTCSEEEEESC-CCCCCCGG-----
T ss_pred ccceeEEEccCCC-chhcChhh----hhCCCCCEEECCCC-CccchhH-H-HhccCCCCEEECCCC-ccccCcHH-----
Confidence 4566666666554 44443333 44666666666666 3444332 2 566666666666664 23344332
Q ss_pred cccccCCcCccccEeecccCcccccccCCCC------ccccCCCcceEeEecCCCcccccCCcceeeecccCCCcccccc
Q 040122 129 KEEHIGPLFPRLLSLKLIDLPKLKRFCNFTG------NIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLK 202 (388)
Q Consensus 129 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~------~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~ 202 (388)
+..+++|++|++++|...+.++.... .+..+++|++|++++| .++
T Consensus 146 -----l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~----------------------- 196 (328)
T 4fcg_A 146 -----IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIR----------------------- 196 (328)
T ss_dssp -----GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCC-----------------------
T ss_pred -----HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcC-----------------------
Confidence 24456666666665544444411100 0112445555555544 333
Q ss_pred CCceEEEecccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEe
Q 040122 203 SEENLLVANQIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALK 282 (388)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~ 282 (388)
.++..++.+++|+.|+++++ .++.++.. ...+++|++|++++|.....+|..+..+++|++|+
T Consensus 197 ------------~lp~~l~~l~~L~~L~L~~N-~l~~l~~~----l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 197 ------------SLPASIANLQNLKSLKIRNS-PLSALGPA----IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp ------------CCCGGGGGCTTCCEEEEESS-CCCCCCGG----GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred ------------cchHhhcCCCCCCEEEccCC-CCCcCchh----hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 33344445555555555553 23333322 14455566666666555555555555566666666
Q ss_pred eccCcCcccccchhhhcCccccceeeEccccccchhhcccccccCCccccccccceEecc
Q 040122 283 VSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLD 342 (388)
Q Consensus 283 l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 342 (388)
+++|.....++.. ..++++|++|++++|+..+.++. ....+++|+.+.+.
T Consensus 260 L~~n~~~~~~p~~--~~~l~~L~~L~L~~n~~~~~iP~--------~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 260 LKDCSNLLTLPLD--IHRLTQLEKLDLRGCVNLSRLPS--------LIAQLPANCIILVP 309 (328)
T ss_dssp CTTCTTCCBCCTT--GGGCTTCCEEECTTCTTCCCCCG--------GGGGSCTTCEEECC
T ss_pred CCCCCchhhcchh--hhcCCCCCEEeCCCCCchhhccH--------HHhhccCceEEeCC
Confidence 6665444443322 24556666666666655555544 22334555555544
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=5.2e-20 Score=176.89 Aligned_cols=114 Identities=18% Similarity=0.118 Sum_probs=59.3
Q ss_pred CCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEecccccccee-cccccccc
Q 040122 50 LDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEV-LHLEELSA 128 (388)
Q Consensus 50 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i-~~~~~~~~ 128 (388)
++|++|+++++. +....... ...+++|++|++++|.....+++ ..+.++++|++|++++|. +..+ +..
T Consensus 30 ~~l~~L~Ls~n~-i~~~~~~~---~~~l~~L~~L~L~~n~~~~~i~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~----- 98 (455)
T 3v47_A 30 AHVNYVDLSLNS-IAELNETS---FSRLQDLQFLKVEQQTPGLVIRN-NTFRGLSSLIILKLDYNQ-FLQLETGA----- 98 (455)
T ss_dssp TTCCEEECCSSC-CCEECTTT---TSSCTTCCEEECCCCSTTCEECT-TTTTTCTTCCEEECTTCT-TCEECTTT-----
T ss_pred CccCEEEecCCc-cCcCChhH---hccCccccEEECcCCcccceECc-ccccccccCCEEeCCCCc-cCccChhh-----
Confidence 567777776654 44332221 14566777777776633223222 226666777777777653 3332 222
Q ss_pred cccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccc
Q 040122 129 KEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETF 181 (388)
Q Consensus 129 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 181 (388)
+..+++|++|+++++....... ....+..+++|++|+++++ .++..
T Consensus 99 -----~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~l~~L~~L~L~~n-~l~~~ 144 (455)
T 3v47_A 99 -----FNGLANLEVLTLTQCNLDGAVL-SGNFFKPLTSLEMLVLRDN-NIKKI 144 (455)
T ss_dssp -----TTTCTTCCEEECTTSCCBTHHH-HSSTTTTCTTCCEEECCSS-BCCSC
T ss_pred -----ccCcccCCEEeCCCCCCCcccc-CcccccCcccCCEEECCCC-ccCcc
Confidence 3456677777776653221111 1111445667777777665 34444
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=3.7e-20 Score=189.28 Aligned_cols=303 Identities=14% Similarity=0.118 Sum_probs=176.2
Q ss_pred HhhhccCCCCcceEEecCccccce------------------eccccccCcc--ccCCccEEEecCCCCCcccCChhhhh
Q 040122 42 CYDEKIGFLDINRLQLSHFPRLQE------------------IWHGQALPVR--FFNNLAELVVDDSTNMSSAIPANLLR 101 (388)
Q Consensus 42 l~~~~~~~~~L~~L~l~~~~~l~~------------------~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~ 101 (388)
+|..+..+++|++|+++++. +.. ++... + .+++|++|++++|..... .|.. ++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l----~f~~L~~L~~L~Ls~N~l~~~-iP~~-l~ 512 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEEL----SWSNLKDLTDVELYNCPNMTQ-LPDF-LY 512 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCC----CGGGCTTCCEEEEESCTTCCS-CCGG-GG
T ss_pred hhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhh----hhccCCCCCEEECcCCCCCcc-ChHH-Hh
Confidence 78888999999999999876 654 33332 4 799999999999955555 4433 89
Q ss_pred cCCCCcEEEeccccccc--eeccc-ccccccccccCCcCccccEeecccCcccccccCCC-CccccCCCcceEeEecCCC
Q 040122 102 CLNNLEWLAVRNCDSLE--EVLHL-EELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFT-GNIIELPKLEYLIIENCPD 177 (388)
Q Consensus 102 ~l~~L~~L~l~~~~~l~--~i~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~l~~L~~L~l~~c~~ 177 (388)
++++|++|++++|..+. .+|.. ..+. .....+++|+.|+++++. +..+ +. ..++.+++|++|+++++ .
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~----~~~~~l~~L~~L~Ls~N~-L~~i--p~~~~l~~L~~L~~L~Ls~N-~ 584 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLA----DDEDTGPKIQIFYMGYNN-LEEF--PASASLQKMVKLGLLDCVHN-K 584 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHH----HCTTTTTTCCEEECCSSC-CCBC--CCHHHHTTCTTCCEEECTTS-C
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhh----hcccccCCccEEEeeCCc-CCcc--CChhhhhcCCCCCEEECCCC-C
Confidence 99999999999986344 34442 1100 012456799999999875 4455 43 13789999999999997 5
Q ss_pred cccccCCcceeeecccCCCccccccCCceEEEec-ccccccccccCCCC-cceEEecCCCCcceecccCchhHhhhcccc
Q 040122 178 METFTSNSTFVLHMTADNKEPQKLKSEENLLVAN-QIQHLFDEKVAFPQ-LGNLRLSGLHKVQHLWKENDESNKAFANLE 255 (388)
Q Consensus 178 l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~ 255 (388)
++.+| . ++.+++|+.|++++ ....++..++.+++ |+.|+++++. ++.++..... ...++|+
T Consensus 585 l~~lp-~-------------~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~--~~~~~L~ 647 (876)
T 4ecn_A 585 VRHLE-A-------------FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNA--KSVYVMG 647 (876)
T ss_dssp CCBCC-C-------------CCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCT--TCSSCEE
T ss_pred cccch-h-------------hcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC-CCcCchhhhc--cccCCCC
Confidence 66666 2 55666666666666 33355555555666 6666666542 4444321100 1112255
Q ss_pred EEEEecCCCcc----------------------------cccCCcc-ccCCCCEEeeccCcCcccccchhh------hcC
Q 040122 256 RLEISECSKLQ----------------------------KLVPPSW-HLENLEALKVSKCHELINVLTLSA------SKN 300 (388)
Q Consensus 256 ~L~i~~~~~~~----------------------------~~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~------~~~ 300 (388)
.|++++|.... .+|..+. .+++|+.|+++++ .+..++...+ .++
T Consensus 648 ~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~n 726 (876)
T 4ecn_A 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKN 726 (876)
T ss_dssp EEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTT
T ss_pred EEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccc
Confidence 55555543322 2332221 3455555555543 3333322111 012
Q ss_pred ccccceeeEccccccchhhcccccccCCccccccccceEecccCCCcceecCCCccccCCCcceEEecc------CCCcc
Q 040122 301 LVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTSFCLGNYALEFPSLKQVVVRQ------CPKMK 374 (388)
Q Consensus 301 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~------c~~l~ 374 (388)
+++|+.|++++|. +..++. .+. ...+++|+.|+++++ .++.++..... +++|+.|++++ |...+
T Consensus 727 l~~L~~L~Ls~N~-L~~lp~---~l~---~~~l~~L~~L~Ls~N-~L~~lp~~l~~--L~~L~~L~Ls~N~~ls~N~l~~ 796 (876)
T 4ecn_A 727 TYLLTTIDLRFNK-LTSLSD---DFR---ATTLPYLSNMDVSYN-CFSSFPTQPLN--SSQLKAFGIRHQRDAEGNRILR 796 (876)
T ss_dssp GGGCCEEECCSSC-CCCCCG---GGS---TTTCTTCCEEECCSS-CCSSCCCGGGG--CTTCCEEECCCCBCTTCCBCCC
T ss_pred cCCccEEECCCCC-CccchH---Hhh---hccCCCcCEEEeCCC-CCCccchhhhc--CCCCCEEECCCCCCcccccccc
Confidence 2355555555553 223322 000 014567777777665 34445544432 67777777755 44445
Q ss_pred cccCCCCCCCCCC
Q 040122 375 IFSQGLLDTPMLN 387 (388)
Q Consensus 375 ~lp~~~~~~~~L~ 387 (388)
.+|..+.++++|+
T Consensus 797 ~ip~~l~~L~~L~ 809 (876)
T 4ecn_A 797 QWPTGITTCPSLI 809 (876)
T ss_dssp CCCTTGGGCSSCC
T ss_pred cChHHHhcCCCCC
Confidence 6677777777665
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.84 E-value=1.3e-19 Score=177.20 Aligned_cols=133 Identities=14% Similarity=0.130 Sum_probs=70.0
Q ss_pred hhccccEEEEecCCCcccccCCccccCCCCEEeeccCcCcccccc-hhhhcCccccceeeEccccccchhhccc-ccccC
Q 040122 250 AFANLERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLT-LSASKNLVNLGRMMIADCKMIEQIIQLQ-VGEEA 327 (388)
Q Consensus 250 ~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~ 327 (388)
.+++|++|++++|.....+|..+..+++|++|+++++ .+..++. ......+++|++|++++|.....++... .....
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 3455666666655444444555555556666666554 2332211 1122445555555555554322122210 00000
Q ss_pred C-------------ccccc-cccceEecccCCCcceecCCCccccCCCcceEEeccCCCcccccCC-CCCCCCCC
Q 040122 328 K-------------DCNVF-KELEYLGLDCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQG-LLDTPMLN 387 (388)
Q Consensus 328 ~-------------~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-~~~~~~L~ 387 (388)
+ ....+ ++|++|+++++ .++.++.+.. .+++|++|++++| +++.+|.+ +.++++|+
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~--~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVV--KLEALQELNVASN-QLKSVPDGIFDRLTSLQ 471 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGG--GCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred CCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhh--cCCCCCEEECCCC-cCCccCHHHhccCCccc
Confidence 0 00112 57888888776 4666666553 3788999999887 46788876 66777765
No 21
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=1.2e-19 Score=174.14 Aligned_cols=274 Identities=15% Similarity=0.116 Sum_probs=135.8
Q ss_pred hccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccc
Q 040122 45 EKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLE 124 (388)
Q Consensus 45 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~ 124 (388)
.+..+++|++|+++++. +..++ ...+++|++|++++| .++.. + ++++++|++|++++| .+..++
T Consensus 59 ~l~~l~~L~~L~Ls~n~-l~~~~------~~~l~~L~~L~Ls~N-~l~~~-~---~~~l~~L~~L~L~~N-~l~~l~--- 122 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNN-ITTLD------LSQNTNLTYLACDSN-KLTNL-D---VTPLTKLTYLNCDTN-KLTKLD--- 122 (457)
T ss_dssp TGGGCTTCSEEECCSSC-CSCCC------CTTCTTCSEEECCSS-CCSCC-C---CTTCTTCCEEECCSS-CCSCCC---
T ss_pred hhcccCCCCEEEccCCc-CCeEc------cccCCCCCEEECcCC-CCcee-e---cCCCCcCCEEECCCC-cCCeec---
Confidence 45667778888887765 55432 245777888888777 45553 3 567777888887775 333331
Q ss_pred cccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcce-eeeccc-----CCCcc
Q 040122 125 ELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTF-VLHMTA-----DNKEP 198 (388)
Q Consensus 125 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~-~~~l~~-----~~~~l 198 (388)
+..+++|++|+++++. ++.+ . ++.+++|++|++.+|..+..++..... +..+.. ..-.+
T Consensus 123 ---------~~~l~~L~~L~l~~N~-l~~l----~-l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~l 187 (457)
T 3bz5_A 123 ---------VSQNPLLTYLNCARNT-LTEI----D-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDV 187 (457)
T ss_dssp ---------CTTCTTCCEEECTTSC-CSCC----C-CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCCC
T ss_pred ---------CCCCCcCCEEECCCCc-ccee----c-cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceecc
Confidence 2446667777766552 3333 1 445666666666666444433211000 000000 00013
Q ss_pred ccccCCceEEEec-ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCC
Q 040122 199 QKLKSEENLLVAN-QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLEN 277 (388)
Q Consensus 199 ~~l~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~ 277 (388)
..+++|+.|++++ ....+ .++.+++|+.|+++++ .++.++. ..+++|+.|++++|... .++ ...+++
T Consensus 188 ~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N-~l~~ip~------~~l~~L~~L~l~~N~l~-~~~--~~~l~~ 255 (457)
T 3bz5_A 188 SQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSN-KLTEIDV------TPLTQLTYFDCSVNPLT-ELD--VSTLSK 255 (457)
T ss_dssp TTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSS-CCSCCCC------TTCTTCSEEECCSSCCS-CCC--CTTCTT
T ss_pred ccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCC-cccccCc------cccCCCCEEEeeCCcCC-CcC--HHHCCC
Confidence 4445555555554 11111 2444555555555553 3444331 44555666666555322 222 223333
Q ss_pred CCEE----------eeccCcCcccccchhhhcCccccceeeEccccccchhhcccccccCCccccccccceEecccCCCc
Q 040122 278 LEAL----------KVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSL 347 (388)
Q Consensus 278 L~~L----------~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 347 (388)
|+.| ++++|..+..++ ...+++|+.|++++|..++.++.....+..++...+++|++|+++++ .+
T Consensus 256 L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l 330 (457)
T 3bz5_A 256 LTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-EL 330 (457)
T ss_dssp CCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CC
T ss_pred CCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cc
Confidence 3333 233332222221 13456666666666666555554333333334444556666666554 34
Q ss_pred ceecCCCccccCCCcceEEeccC
Q 040122 348 TSFCLGNYALEFPSLKQVVVRQC 370 (388)
Q Consensus 348 ~~~~~~~~~~~~~~L~~L~l~~c 370 (388)
+.++.+. +++|+.|++.++
T Consensus 331 ~~l~l~~----l~~L~~L~l~~N 349 (457)
T 3bz5_A 331 TELDVSH----NTKLKSLSCVNA 349 (457)
T ss_dssp SCCCCTT----CTTCSEEECCSS
T ss_pred ccccccc----CCcCcEEECCCC
Confidence 4443222 667777777664
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.83 E-value=1.3e-19 Score=170.58 Aligned_cols=281 Identities=15% Similarity=0.135 Sum_probs=182.9
Q ss_pred CCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceeccccccc
Q 040122 48 GFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELS 127 (388)
Q Consensus 48 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~ 127 (388)
.+++++.++++++. +..++... ...+++|++|++++| .+...++.. +.++++|++|++++|. +..+++..
T Consensus 43 ~l~~l~~l~l~~~~-l~~l~~~~---~~~l~~L~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~--- 112 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRKLPAAL---LDSFRQVELLNLNDL-QIEEIDTYA-FAYAHTIQKLYMGFNA-IRYLPPHV--- 112 (390)
T ss_dssp GGCCCSEEEEESCE-ESEECTHH---HHHCCCCSEEECTTS-CCCEECTTT-TTTCTTCCEEECCSSC-CCCCCTTT---
T ss_pred ccCCceEEEecCCc-hhhCChhH---hcccccCcEEECCCC-cccccChhh-ccCCCCcCEEECCCCC-CCcCCHHH---
Confidence 46889999999876 66555432 145899999999998 577755543 8899999999999964 44443311
Q ss_pred ccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceE
Q 040122 128 AKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENL 207 (388)
Q Consensus 128 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L 207 (388)
+..+++|++|+++++ .++.+ +...+..+++|++|+++++ .++..+... ++.+++|+.|
T Consensus 113 ------~~~l~~L~~L~L~~n-~l~~l--~~~~~~~l~~L~~L~L~~n-~l~~~~~~~------------~~~l~~L~~L 170 (390)
T 3o6n_A 113 ------FQNVPLLTVLVLERN-DLSSL--PRGIFHNTPKLTTLSMSNN-NLERIEDDT------------FQATTSLQNL 170 (390)
T ss_dssp ------TTTCTTCCEEECCSS-CCCCC--CTTTTTTCTTCCEEECCSS-CCCBCCTTT------------TSSCTTCCEE
T ss_pred ------hcCCCCCCEEECCCC-ccCcC--CHHHhcCCCCCcEEECCCC-ccCccChhh------------ccCCCCCCEE
Confidence 467899999999987 45665 3332468999999999997 566665543 5667777777
Q ss_pred EEec-ccccccccccCCCCcceEEecCC------------------CCcceecccCchhHhhhccccEEEEecCCCcccc
Q 040122 208 LVAN-QIQHLFDEKVAFPQLGNLRLSGL------------------HKVQHLWKENDESNKAFANLERLEISECSKLQKL 268 (388)
Q Consensus 208 ~l~~-~~~~~~~~~~~~~~L~~L~l~~~------------------~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~ 268 (388)
++++ ..... ..+.+++|+.|+++++ ..+..++. ...++|+.|++++|... ..
T Consensus 171 ~l~~n~l~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~------~~~~~L~~L~l~~n~l~-~~ 241 (390)
T 3o6n_A 171 QLSSNRLTHV--DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG------PVNVELTILKLQHNNLT-DT 241 (390)
T ss_dssp ECCSSCCSBC--CGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC------CCCSSCCEEECCSSCCC-CC
T ss_pred ECCCCcCCcc--ccccccccceeecccccccccCCCCcceEEECCCCeeeeccc------cccccccEEECCCCCCc-cc
Confidence 7776 22221 1333455555554432 12333322 22356777777776433 22
Q ss_pred cCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEccccccchhhcccccccCCccccccccceEecccCCCcc
Q 040122 269 VPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSLT 348 (388)
Q Consensus 269 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 348 (388)
..+..+++|++|+++++ .+...... ....+++|++|++++|. ++.++. ....+++|++|+++++ .++
T Consensus 242 -~~l~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~--------~~~~l~~L~~L~L~~n-~l~ 308 (390)
T 3o6n_A 242 -AWLLNYPGLVEVDLSYN-ELEKIMYH-PFVKMQRLERLYISNNR-LVALNL--------YGQPIPTLKVLDLSHN-HLL 308 (390)
T ss_dssp -GGGGGCTTCSEEECCSS-CCCEEESG-GGTTCSSCCEEECCSSC-CCEEEC--------SSSCCTTCCEEECCSS-CCC
T ss_pred -HHHcCCCCccEEECCCC-cCCCcChh-HccccccCCEEECCCCc-CcccCc--------ccCCCCCCCEEECCCC-cce
Confidence 35667788888888876 45554333 23567888888888764 333322 1234688888888887 466
Q ss_pred eecCCCccccCCCcceEEeccCCCcccccCCCCCCCCCC
Q 040122 349 SFCLGNYALEFPSLKQVVVRQCPKMKIFSQGLLDTPMLN 387 (388)
Q Consensus 349 ~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~ 387 (388)
.++..... +++|++|++.+|+ ++.+| +..+++|+
T Consensus 309 ~~~~~~~~--l~~L~~L~L~~N~-i~~~~--~~~~~~L~ 342 (390)
T 3o6n_A 309 HVERNQPQ--FDRLENLYLDHNS-IVTLK--LSTHHTLK 342 (390)
T ss_dssp CCGGGHHH--HTTCSEEECCSSC-CCCCC--CCTTCCCS
T ss_pred ecCccccc--cCcCCEEECCCCc-cceeC--chhhccCC
Confidence 66654433 7889999998876 55665 44555554
No 23
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=1.9e-19 Score=177.85 Aligned_cols=149 Identities=18% Similarity=0.110 Sum_probs=84.6
Q ss_pred ccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCccccc-CCccccCCCCEEeeccCcCcccccchhhh
Q 040122 220 KVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLV-PPSWHLENLEALKVSKCHELINVLTLSAS 298 (388)
Q Consensus 220 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 298 (388)
+..+++|+.|+++++ .+..++.. + ..+++|++|++++|......+ ..+..+++|++|++++|. +...... ..
T Consensus 369 ~~~~~~L~~L~l~~n-~l~~~~~~-~---~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~ 441 (570)
T 2z63_A 369 DFGTTSLKYLDLSFN-GVITMSSN-F---LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNG-IF 441 (570)
T ss_dssp HHTCSCCCEEECCSC-SEEEEEEE-E---ETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC-CEECCTT-TT
T ss_pred ccccCccCEEECCCC-cccccccc-c---cccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc-ccccchh-hh
Confidence 334455555555553 23333322 1 445566666666654333222 245566777777777663 3332222 23
Q ss_pred cCccccceeeEccccccc-hhhcccccccCCccccccccceEecccCCCccee-cCCCccccCCCcceEEeccCCCcccc
Q 040122 299 KNLVNLGRMMIADCKMIE-QIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTSF-CLGNYALEFPSLKQVVVRQCPKMKIF 376 (388)
Q Consensus 299 ~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~l~~c~~l~~l 376 (388)
..+++|++|++++|.... .++. ....+++|++|++++|. ++.+ +..... +++|++|++++|. ++.+
T Consensus 442 ~~l~~L~~L~l~~n~l~~~~~p~--------~~~~l~~L~~L~l~~n~-l~~~~~~~~~~--l~~L~~L~l~~n~-l~~~ 509 (570)
T 2z63_A 442 NGLSSLEVLKMAGNSFQENFLPD--------IFTELRNLTFLDLSQCQ-LEQLSPTAFNS--LSSLQVLNMASNQ-LKSV 509 (570)
T ss_dssp TTCTTCCEEECTTCEEGGGEECS--------CCTTCTTCCEEECTTSC-CCEECTTTTTT--CTTCCEEECCSSC-CSCC
T ss_pred hcCCcCcEEECcCCcCccccchh--------hhhcccCCCEEECCCCc-cccCChhhhhc--ccCCCEEeCCCCc-CCCC
Confidence 567777777777775331 2221 22456889999998874 4444 433332 7899999999875 5555
Q ss_pred c-CCCCCCCCCC
Q 040122 377 S-QGLLDTPMLN 387 (388)
Q Consensus 377 p-~~~~~~~~L~ 387 (388)
| ..+.++++|+
T Consensus 510 ~~~~~~~l~~L~ 521 (570)
T 2z63_A 510 PDGIFDRLTSLQ 521 (570)
T ss_dssp CTTTTTTCTTCC
T ss_pred CHHHhhcccCCc
Confidence 4 4567777775
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.83 E-value=2e-19 Score=173.37 Aligned_cols=280 Identities=17% Similarity=0.209 Sum_probs=146.5
Q ss_pred ccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceeccccc
Q 040122 46 KIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEE 125 (388)
Q Consensus 46 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~ 125 (388)
+..+++|++|+++++. +...+. . ..+++|++|++++| .+...++ +.++++|++|++++| .+..++..
T Consensus 64 ~~~l~~L~~L~Ls~n~-l~~~~~-~----~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~-- 130 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQ-LTDITP-L----KNLTKLVDILMNNN-QIADITP---LANLTNLTGLTLFNN-QITDIDPL-- 130 (466)
T ss_dssp GGGCTTCCEEECCSSC-CCCCGG-G----TTCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCGGG--
T ss_pred hhhhcCCCEEECCCCc-cCCchh-h----hccccCCEEECCCC-ccccChh---hcCCCCCCEEECCCC-CCCCChHH--
Confidence 5568999999999876 664443 2 57899999999988 5666444 789999999999996 45554432
Q ss_pred ccccccccCCcCccccEeecccCcccccccC-----------------CCCccccCCCcceEeEecCCCcccccCCccee
Q 040122 126 LSAKEEHIGPLFPRLLSLKLIDLPKLKRFCN-----------------FTGNIIELPKLEYLIIENCPDMETFTSNSTFV 188 (388)
Q Consensus 126 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-----------------~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 188 (388)
..+++|++|+++++. +..+.. ....+..+++|++|++++|. ++..+
T Consensus 131 ---------~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~------ 193 (466)
T 1o6v_A 131 ---------KNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDIS------ 193 (466)
T ss_dssp ---------TTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCG------
T ss_pred ---------cCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCCh------
Confidence 557777777777653 222210 00113345555555555542 33221
Q ss_pred eecccCCCccccccCCceEEEec-ccccccccccCCCCcceEEecCCCCcceeccc-----------------CchhHhh
Q 040122 189 LHMTADNKEPQKLKSEENLLVAN-QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKE-----------------NDESNKA 250 (388)
Q Consensus 189 ~~l~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-----------------~~~~~~~ 250 (388)
.+..+++|+.|++++ ....... ++.+++|+.|+++++ .++.++.- ..+....
T Consensus 194 --------~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 263 (466)
T 1o6v_A 194 --------VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGN-QLKDIGTLASLTNLTDLDLANNQISNLAPLSG 263 (466)
T ss_dssp --------GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCCCGGGTT
T ss_pred --------hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCC-CcccchhhhcCCCCCEEECCCCccccchhhhc
Confidence 134445555555544 1111111 333444444444443 12222100 0000133
Q ss_pred hccccEEEEecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEccccccchhhcccccccCCcc
Q 040122 251 FANLERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDC 330 (388)
Q Consensus 251 ~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 330 (388)
+++|++|++++|... .++. +..+++|+.|+++++ .+..++. ...+++|+.|++++|.... +.. .
T Consensus 264 l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n~l~~-~~~---------~ 327 (466)
T 1o6v_A 264 LTKLTELKLGANQIS-NISP-LAGLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFNNISD-ISP---------V 327 (466)
T ss_dssp CTTCSEEECCSSCCC-CCGG-GTTCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSSCCSC-CGG---------G
T ss_pred CCCCCEEECCCCccC-cccc-ccCCCccCeEEcCCC-cccCchh---hcCCCCCCEEECcCCcCCC-chh---------h
Confidence 444445544444222 2221 444555555555554 2333322 2445566666666553221 111 1
Q ss_pred ccccccceEecccCCCcceecCCCccccCCCcceEEeccCCCcccccCCCCCCCCCC
Q 040122 331 NVFKELEYLGLDCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGLLDTPMLN 387 (388)
Q Consensus 331 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~ 387 (388)
..+++|++|+++++ .++.++ .. ..+++|++|++.+|+.....| +..+++|+
T Consensus 328 ~~l~~L~~L~l~~n-~l~~~~-~l--~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 378 (466)
T 1o6v_A 328 SSLTKLQRLFFYNN-KVSDVS-SL--ANLTNINWLSAGHNQISDLTP--LANLTRIT 378 (466)
T ss_dssp GGCTTCCEEECCSS-CCCCCG-GG--TTCTTCCEEECCSSCCCBCGG--GTTCTTCC
T ss_pred ccCccCCEeECCCC-ccCCch-hh--ccCCCCCEEeCCCCccCccch--hhcCCCCC
Confidence 34577777777776 344442 11 236788888888776443333 56666664
No 25
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=3.4e-19 Score=171.05 Aligned_cols=306 Identities=11% Similarity=0.053 Sum_probs=179.3
Q ss_pred ccCcceeeecCCCCchhHHHHhhhccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhh
Q 040122 22 KEEGELHHWEGNNLNSTIQKCYDEKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLR 101 (388)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 101 (388)
.++++.++..++.+ ..+ .+..+++|++|+++++. +...+ .+.+++|++|++++| .++.+ + ++
T Consensus 63 l~~L~~L~Ls~n~l----~~~--~~~~l~~L~~L~Ls~N~-l~~~~------~~~l~~L~~L~L~~N-~l~~l-~---~~ 124 (457)
T 3bz5_A 63 LTGLTKLICTSNNI----TTL--DLSQNTNLTYLACDSNK-LTNLD------VTPLTKLTYLNCDTN-KLTKL-D---VS 124 (457)
T ss_dssp CTTCSEEECCSSCC----SCC--CCTTCTTCSEEECCSSC-CSCCC------CTTCTTCCEEECCSS-CCSCC-C---CT
T ss_pred cCCCCEEEccCCcC----CeE--ccccCCCCCEEECcCCC-Cceee------cCCCCcCCEEECCCC-cCCee-c---CC
Confidence 34455565655322 112 26677888888888775 55432 245888888888887 56663 3 67
Q ss_pred cCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccc
Q 040122 102 CLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETF 181 (388)
Q Consensus 102 ~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 181 (388)
++++|++|++++|. +..++ +..+++|++|+++++..++.+ . +..+++|++|+++++ .++.+
T Consensus 125 ~l~~L~~L~l~~N~-l~~l~------------l~~l~~L~~L~l~~n~~~~~~----~-~~~l~~L~~L~ls~n-~l~~l 185 (457)
T 3bz5_A 125 QNPLLTYLNCARNT-LTEID------------VSHNTQLTELDCHLNKKITKL----D-VTPQTQLTTLDCSFN-KITEL 185 (457)
T ss_dssp TCTTCCEEECTTSC-CSCCC------------CTTCTTCCEEECTTCSCCCCC----C-CTTCTTCCEEECCSS-CCCCC
T ss_pred CCCcCCEEECCCCc-cceec------------cccCCcCCEEECCCCCccccc----c-cccCCcCCEEECCCC-cccee
Confidence 88888888888853 33331 245677777777766555444 1 445667777777665 44444
Q ss_pred cCCcce-eeec--cc---CCCccccccCCceEEEec-ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhc--
Q 040122 182 TSNSTF-VLHM--TA---DNKEPQKLKSEENLLVAN-QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFA-- 252 (388)
Q Consensus 182 ~~~~~~-~~~l--~~---~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-- 252 (388)
+..... +..+ .. ....++.+++|+.|++++ ....++ ++.+++|+.|+++++ .++.++. ..++
T Consensus 186 ~l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N-~l~~~~~------~~l~~L 256 (457)
T 3bz5_A 186 DVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVN-PLTELDV------STLSKL 256 (457)
T ss_dssp CCTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCCC------TTCTTC
T ss_pred ccccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCC-cCCCcCH------HHCCCC
Confidence 422211 1111 11 111477899999999998 444444 778999999999985 5666553 3344
Q ss_pred --------cccEEEEecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEccccccchhhccccc
Q 040122 253 --------NLERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVG 324 (388)
Q Consensus 253 --------~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 324 (388)
+|+.|++++|.....+| ...+++|+.|++++|..+..++. ..++|+.|++++|+.++.+......
T Consensus 257 ~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~-----~~~~L~~L~l~~~~~L~~L~L~~N~ 329 (457)
T 3bz5_A 257 TTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC-----QAAGITELDLSQNPKLVYLYLNNTE 329 (457)
T ss_dssp CEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC-----TTCCCSCCCCTTCTTCCEEECTTCC
T ss_pred CEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc-----CCCcceEechhhcccCCEEECCCCc
Confidence 45556666666666665 46789999999999976655432 2233444444444433333222222
Q ss_pred ccCCccccccccceEecccCCCcceec------CCCcc----ccCCCcceEEeccCCCcccccCCCC
Q 040122 325 EEAKDCNVFKELEYLGLDCLPSLTSFC------LGNYA----LEFPSLKQVVVRQCPKMKIFSQGLL 381 (388)
Q Consensus 325 ~~~~~~~~~~~L~~L~l~~~~~l~~~~------~~~~~----~~~~~L~~L~l~~c~~l~~lp~~~~ 381 (388)
+..++...+++|+.|+++++ .++.++ ..... -.+..|+.++++...--..+|..+.
T Consensus 330 l~~l~l~~l~~L~~L~l~~N-~l~~l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 330 LTELDVSHNTKLKSLSCVNA-HIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp CSCCCCTTCTTCSEEECCSS-CCCBCTTGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTCB
T ss_pred ccccccccCCcCcEEECCCC-CCCCccccccccccCCcEEecceeeecCccccccCcEEEEcChhHh
Confidence 22233466789999999875 233321 11100 0134556666666544446665543
No 26
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=1.7e-19 Score=165.73 Aligned_cols=223 Identities=15% Similarity=0.181 Sum_probs=110.6
Q ss_pred cCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccc
Q 040122 102 CLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETF 181 (388)
Q Consensus 102 ~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 181 (388)
..+++++|+++++ .+..+|.. +..+++|++|+++++. +..+ +.. ++.+++|++|++++| .++.+
T Consensus 79 ~~~~l~~L~L~~n-~l~~lp~~----------l~~l~~L~~L~L~~n~-l~~l--p~~-~~~l~~L~~L~Ls~n-~l~~l 142 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLPQFPDQ----------AFRLSHLQHMTIDAAG-LMEL--PDT-MQQFAGLETLTLARN-PLRAL 142 (328)
T ss_dssp TSTTCCEEEEESS-CCSSCCSC----------GGGGTTCSEEEEESSC-CCCC--CSC-GGGGTTCSEEEEESC-CCCCC
T ss_pred cccceeEEEccCC-CchhcChh----------hhhCCCCCEEECCCCC-ccch--hHH-HhccCCCCEEECCCC-ccccC
Confidence 4577888888884 45555543 2447788888887764 3444 333 667888888888886 45544
Q ss_pred cCCcceeeecccCCCccccccCCceEEEec--ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEE
Q 040122 182 TSNSTFVLHMTADNKEPQKLKSEENLLVAN--QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEI 259 (388)
Q Consensus 182 ~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~--~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i 259 (388)
+.. ++.+++|+.|++++ ....++..++. ..+. . ....+++|++|++
T Consensus 143 p~~-------------l~~l~~L~~L~L~~n~~~~~~p~~~~~------~~~~----------~---~~~~l~~L~~L~L 190 (328)
T 4fcg_A 143 PAS-------------IASLNRLRELSIRACPELTELPEPLAS------TDAS----------G---EHQGLVNLQSLRL 190 (328)
T ss_dssp CGG-------------GGGCTTCCEEEEEEETTCCCCCSCSEE------EC-C----------C---CEEESTTCCEEEE
T ss_pred cHH-------------HhcCcCCCEEECCCCCCccccChhHhh------ccch----------h---hhccCCCCCEEEC
Confidence 432 56666666666665 22333332221 0000 0 0012344444444
Q ss_pred ecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEccccccchhhcccccccCCccccccccceE
Q 040122 260 SECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYL 339 (388)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 339 (388)
++|. +..+|..+..+++|++|+++++ .+..++.. ...+++|++|++++|...+.++. ....+++|++|
T Consensus 191 ~~n~-l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~--l~~l~~L~~L~Ls~n~~~~~~p~--------~~~~l~~L~~L 258 (328)
T 4fcg_A 191 EWTG-IRSLPASIANLQNLKSLKIRNS-PLSALGPA--IHHLPKLEELDLRGCTALRNYPP--------IFGGRAPLKRL 258 (328)
T ss_dssp EEEC-CCCCCGGGGGCTTCCEEEEESS-CCCCCCGG--GGGCTTCCEEECTTCTTCCBCCC--------CTTCCCCCCEE
T ss_pred cCCC-cCcchHhhcCCCCCCEEEccCC-CCCcCchh--hccCCCCCEEECcCCcchhhhHH--------HhcCCCCCCEE
Confidence 4442 2244444444455555555443 23332221 23444555555555444333322 11233455555
Q ss_pred ecccCCCcceecCCCccccCCCcceEEeccCCCcccccCCCCCCCCC
Q 040122 340 GLDCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGLLDTPML 386 (388)
Q Consensus 340 ~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L 386 (388)
++++|+..+.++..... +++|++|++++|+.++.+|.++.++++|
T Consensus 259 ~L~~n~~~~~~p~~~~~--l~~L~~L~L~~n~~~~~iP~~l~~L~~L 303 (328)
T 4fcg_A 259 ILKDCSNLLTLPLDIHR--LTQLEKLDLRGCVNLSRLPSLIAQLPAN 303 (328)
T ss_dssp ECTTCTTCCBCCTTGGG--CTTCCEEECTTCTTCCCCCGGGGGSCTT
T ss_pred ECCCCCchhhcchhhhc--CCCCCEEeCCCCCchhhccHHHhhccCc
Confidence 55555444444443322 4555555555555555555555555444
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=3.8e-19 Score=176.74 Aligned_cols=280 Identities=15% Similarity=0.156 Sum_probs=180.4
Q ss_pred cCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccc
Q 040122 47 IGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEEL 126 (388)
Q Consensus 47 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~ 126 (388)
..+++|++|+++++. +..++... ...+++|++|++++| .+...++. .++++++|++|++++| .+..++...
T Consensus 72 ~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~l~~~~-- 142 (597)
T 3oja_B 72 DSFRQVELLNLNDLQ-IEEIDTYA---FAYAHTIQKLYMGFN-AIRYLPPH-VFQNVPLLTVLVLERN-DLSSLPRGI-- 142 (597)
T ss_dssp HHCCCCSEEECTTSC-CCEECTTT---TTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCCCTTT--
T ss_pred ccCCCCcEEECCCCC-CCCCChHH---hcCCCCCCEEECCCC-cCCCCCHH-HHcCCCCCCEEEeeCC-CCCCCCHHH--
Confidence 457889999999876 66544322 256889999999988 57765544 3788999999999986 455554421
Q ss_pred cccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcce-eeecccCC---Ccccccc
Q 040122 127 SAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTF-VLHMTADN---KEPQKLK 202 (388)
Q Consensus 127 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~-~~~l~~~~---~~l~~l~ 202 (388)
+..+++|++|+++++. +..+ +...++.+++|++|+++++ .++..+....+ +..+...+ ..+...+
T Consensus 143 -------~~~l~~L~~L~Ls~N~-l~~~--~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~ 211 (597)
T 3oja_B 143 -------FHNTPKLTTLSMSNNN-LERI--EDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAIPI 211 (597)
T ss_dssp -------TTTCTTCCEEECCSSC-CCBC--CTTTTTTCTTCCEEECTTS-CCSBCCGGGCTTCSEEECCSSCCSEEECCT
T ss_pred -------hccCCCCCEEEeeCCc-CCCC--ChhhhhcCCcCcEEECcCC-CCCCcChhhhhhhhhhhcccCccccccCCc
Confidence 3568899999998874 4444 2333678899999999887 45554322110 00111100 1233344
Q ss_pred CCceEEEec-ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEE
Q 040122 203 SEENLLVAN-QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEAL 281 (388)
Q Consensus 203 ~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L 281 (388)
+|+.|++++ ....++.. .+++|+.|+++++ .++..+ ....+++|+.|++++|......|..+..+++|++|
T Consensus 212 ~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n-~l~~~~-----~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 283 (597)
T 3oja_B 212 AVEELDASHNSINVVRGP--VNVELTILKLQHN-NLTDTA-----WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 283 (597)
T ss_dssp TCSEEECCSSCCCEEECS--CCSCCCEEECCSS-CCCCCG-----GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred hhheeeccCCcccccccc--cCCCCCEEECCCC-CCCCCh-----hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEE
Confidence 566666655 22222221 2357788888775 344432 22677888888888887666666677788888888
Q ss_pred eeccCcCcccccchhhhcCccccceeeEccccccchhhcccccccCCccccccccceEecccCCCcceecCCCccccCCC
Q 040122 282 KVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTSFCLGNYALEFPS 361 (388)
Q Consensus 282 ~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 361 (388)
+++++ .+..++.. ...+++|+.|++++|.. ..++. ....+++|++|+++++. +..++.+. +++
T Consensus 284 ~Ls~N-~l~~l~~~--~~~l~~L~~L~Ls~N~l-~~i~~--------~~~~l~~L~~L~L~~N~-l~~~~~~~----~~~ 346 (597)
T 3oja_B 284 YISNN-RLVALNLY--GQPIPTLKVLDLSHNHL-LHVER--------NQPQFDRLENLYLDHNS-IVTLKLST----HHT 346 (597)
T ss_dssp ECTTS-CCCEEECS--SSCCTTCCEEECCSSCC-CCCGG--------GHHHHTTCSEEECCSSC-CCCCCCCT----TCC
T ss_pred ECCCC-CCCCCCcc--cccCCCCcEEECCCCCC-CccCc--------ccccCCCCCEEECCCCC-CCCcChhh----cCC
Confidence 88886 55555332 25678888888888753 34433 22456888888888864 55555433 788
Q ss_pred cceEEeccCC
Q 040122 362 LKQVVVRQCP 371 (388)
Q Consensus 362 L~~L~l~~c~ 371 (388)
|++|++++|+
T Consensus 347 L~~L~l~~N~ 356 (597)
T 3oja_B 347 LKNLTLSHND 356 (597)
T ss_dssp CSEEECCSSC
T ss_pred CCEEEeeCCC
Confidence 8888888876
No 28
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=6.8e-19 Score=162.11 Aligned_cols=279 Identities=13% Similarity=0.093 Sum_probs=155.5
Q ss_pred CcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccc
Q 040122 51 DINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKE 130 (388)
Q Consensus 51 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 130 (388)
+++.++++++. +..++.. ..+++++|++++| .++.+++.. +.++++|++|++++|. +..++...
T Consensus 34 ~l~~l~~~~~~-l~~ip~~------~~~~l~~L~l~~n-~i~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~------ 97 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKAVPKE------ISPDTTLLDLQNN-DISELRKDD-FKGLQHLYALVLVNNK-ISKIHEKA------ 97 (332)
T ss_dssp ETTEEECCSSC-CSSCCSC------CCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSC-CCEECGGG------
T ss_pred cCCEEECCCCC-ccccCCC------CCCCCeEEECCCC-cCCccCHhH-hhCCCCCcEEECCCCc-cCccCHhH------
Confidence 56777766554 4433322 2467777777776 455544433 6777777777777753 44432210
Q ss_pred cccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEe
Q 040122 131 EHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVA 210 (388)
Q Consensus 131 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~ 210 (388)
+..+++|++|+++++ .++.+ +.. ..++|++|++.++ .++.++... +..+++|+.|+++
T Consensus 98 ---~~~l~~L~~L~L~~n-~l~~l--~~~---~~~~L~~L~l~~n-~i~~~~~~~------------~~~l~~L~~L~l~ 155 (332)
T 2ft3_A 98 ---FSPLRKLQKLYISKN-HLVEI--PPN---LPSSLVELRIHDN-RIRKVPKGV------------FSGLRNMNCIEMG 155 (332)
T ss_dssp ---STTCTTCCEEECCSS-CCCSC--CSS---CCTTCCEEECCSS-CCCCCCSGG------------GSSCSSCCEEECC
T ss_pred ---hhCcCCCCEEECCCC-cCCcc--Ccc---ccccCCEEECCCC-ccCccCHhH------------hCCCccCCEEECC
Confidence 355777777777765 34444 222 1267777777775 455554432 5667777777777
Q ss_pred c-cc---ccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccC
Q 040122 211 N-QI---QHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKC 286 (388)
Q Consensus 211 ~-~~---~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c 286 (388)
+ .. ...+..+..+ +|+.|+++++ .++.++.. ..++|++|+++++......+..+..+++|++|+++++
T Consensus 156 ~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~------~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N 227 (332)
T 2ft3_A 156 GNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKD------LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN 227 (332)
T ss_dssp SCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSS------SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS
T ss_pred CCccccCCCCcccccCC-ccCEEECcCC-CCCccCcc------ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 6 21 1223333444 6777777764 35555432 2256777777776544443455666777777777765
Q ss_pred cCcccccchhhhcCccccceeeEccccccchhhcccccccCCccccccccceEecccCCCcceecCCCcc-----ccCCC
Q 040122 287 HELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTSFCLGNYA-----LEFPS 361 (388)
Q Consensus 287 ~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-----~~~~~ 361 (388)
.+..++... ...+++|++|++++|. +..++. ....+++|++|+++++ .++.++..... ...++
T Consensus 228 -~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~lp~--------~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~ 295 (332)
T 2ft3_A 228 -QIRMIENGS-LSFLPTLRELHLDNNK-LSRVPA--------GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAY 295 (332)
T ss_dssp -CCCCCCTTG-GGGCTTCCEEECCSSC-CCBCCT--------TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCC
T ss_pred -cCCcCChhH-hhCCCCCCEEECCCCc-CeecCh--------hhhcCccCCEEECCCC-CCCccChhHcccccccccccc
Confidence 454443322 2466777777777663 333332 1244567777777765 35554432211 01456
Q ss_pred cceEEeccCCCc--ccccCCCCCCCCCC
Q 040122 362 LKQVVVRQCPKM--KIFSQGLLDTPMLN 387 (388)
Q Consensus 362 L~~L~l~~c~~l--~~lp~~~~~~~~L~ 387 (388)
|+.+++.++|.. ...|..+..+++|+
T Consensus 296 l~~L~l~~N~~~~~~~~~~~~~~l~~L~ 323 (332)
T 2ft3_A 296 YNGISLFNNPVPYWEVQPATFRCVTDRL 323 (332)
T ss_dssp BSEEECCSSSSCGGGSCGGGGTTBCCST
T ss_pred ccceEeecCcccccccCcccccccchhh
Confidence 777777777643 23344445555544
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.82 E-value=1e-18 Score=172.47 Aligned_cols=133 Identities=14% Similarity=0.133 Sum_probs=76.4
Q ss_pred hhccccEEEEecCCCcccccCCccccCCCCEEeeccCcCcccccc-hhhhcCccccceeeEccccccchhhccc-cccc-
Q 040122 250 AFANLERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLT-LSASKNLVNLGRMMIADCKMIEQIIQLQ-VGEE- 326 (388)
Q Consensus 250 ~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~- 326 (388)
.+++|++|++++|.....++..+..+++|++|+++++ .++.++. ......+++|++|++++|.....++... .+..
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 4456667777666555545556666666666666664 3443321 1123455666666666654322122100 0000
Q ss_pred ------------CCccccc-cccceEecccCCCcceecCCCccccCCCcceEEeccCCCcccccCC-CCCCCCCC
Q 040122 327 ------------AKDCNVF-KELEYLGLDCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQG-LLDTPMLN 387 (388)
Q Consensus 327 ------------~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-~~~~~~L~ 387 (388)
......+ ++|++|+++++ .++.++.+.. .+++|++|++.+|. ++.+|.+ +..+++|+
T Consensus 430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~--~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~ 500 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVT--HLQALQELNVASNQ-LKSVPDGVFDRLTSLQ 500 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTT--SSCCCSEEECCSSC-CCCCCTTSTTTCTTCC
T ss_pred CCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhc--CCCCCCEEECCCCC-CCCCCHHHHhcCCCCC
Confidence 0000122 57888888876 5777776664 37899999998864 6788877 77777775
No 30
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.81 E-value=6.6e-19 Score=173.98 Aligned_cols=176 Identities=14% Similarity=0.076 Sum_probs=90.8
Q ss_pred cccccCCceEEEec-ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccC
Q 040122 198 PQKLKSEENLLVAN-QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLE 276 (388)
Q Consensus 198 l~~l~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~ 276 (388)
+..+++|+.|++++ ....++..+..+ +|++|++.++. +..++. ..+++|++|++.++......+. ..++
T Consensus 278 ~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~-~~~l~~------~~l~~L~~L~l~~n~~~~~~~~--~~~~ 347 (570)
T 2z63_A 278 FNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCK-FGQFPT------LKLKSLKRLTFTSNKGGNAFSE--VDLP 347 (570)
T ss_dssp TGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCB-CSSCCB------CBCSSCCEEEEESCBSCCBCCC--CBCT
T ss_pred hcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCc-ccccCc------ccccccCEEeCcCCcccccccc--ccCC
Confidence 44556677777666 333455545555 66666666642 333332 3345666666666543333222 4556
Q ss_pred CCCEEeeccCcCcccccc-hhhhcCccccceeeEccccccchhhcc-------------cccc----cCCccccccccce
Q 040122 277 NLEALKVSKCHELINVLT-LSASKNLVNLGRMMIADCKMIEQIIQL-------------QVGE----EAKDCNVFKELEY 338 (388)
Q Consensus 277 ~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~-------------~~~~----~~~~~~~~~~L~~ 338 (388)
+|++|+++++ .+..... ......+++|++|++++|... .++.. ...+ .......+++|++
T Consensus 348 ~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 348 SLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp TCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred CCCEEeCcCC-ccCccccccccccccCccCEEECCCCccc-cccccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence 6666666654 2222210 111234455555555544311 11100 0000 0001234577888
Q ss_pred EecccCCCcceecCCCccccCCCcceEEeccCCCc-ccccCCCCCCCCCC
Q 040122 339 LGLDCLPSLTSFCLGNYALEFPSLKQVVVRQCPKM-KIFSQGLLDTPMLN 387 (388)
Q Consensus 339 L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l-~~lp~~~~~~~~L~ 387 (388)
|+++++......+.... .+++|++|++.+|... ..+|..+..+++|+
T Consensus 426 L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~ 473 (570)
T 2z63_A 426 LDISHTHTRVAFNGIFN--GLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473 (570)
T ss_dssp EECTTSCCEECCTTTTT--TCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred EeCcCCcccccchhhhh--cCCcCcEEECcCCcCccccchhhhhcccCCC
Confidence 88877743333333332 2788999999888754 36888888888776
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=6.1e-19 Score=175.24 Aligned_cols=281 Identities=15% Similarity=0.137 Sum_probs=183.2
Q ss_pred CCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceeccccccc
Q 040122 48 GFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELS 127 (388)
Q Consensus 48 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~ 127 (388)
.+.+++.++++++. +..++... ...+++|++|++++| .+..+++.. ++.+++|++|++++|. +..+++..
T Consensus 49 ~l~~l~~l~l~~~~-l~~lp~~~---~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~--- 118 (597)
T 3oja_B 49 TLNNQKIVTFKNST-MRKLPAAL---LDSFRQVELLNLNDL-QIEEIDTYA-FAYAHTIQKLYMGFNA-IRYLPPHV--- 118 (597)
T ss_dssp GGCCCSEEEESSCE-ESEECTHH---HHHCCCCSEEECTTS-CCCEECTTT-TTTCTTCCEEECCSSC-CCCCCTTT---
T ss_pred cCCCceEEEeeCCC-CCCcCHHH---HccCCCCcEEECCCC-CCCCCChHH-hcCCCCCCEEECCCCc-CCCCCHHH---
Confidence 45788999998775 55554332 145899999999998 677755544 8899999999999964 55543321
Q ss_pred ccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceE
Q 040122 128 AKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENL 207 (388)
Q Consensus 128 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L 207 (388)
+..+++|++|+++++ .+..+ +...++.+++|++|++++| .++..++.. ++.+++|+.|
T Consensus 119 ------~~~l~~L~~L~L~~n-~l~~l--~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~------------~~~l~~L~~L 176 (597)
T 3oja_B 119 ------FQNVPLLTVLVLERN-DLSSL--PRGIFHNTPKLTTLSMSNN-NLERIEDDT------------FQATTSLQNL 176 (597)
T ss_dssp ------TTTCTTCCEEECCSS-CCCCC--CTTTTTTCTTCCEEECCSS-CCCBCCTTT------------TTTCTTCCEE
T ss_pred ------HcCCCCCCEEEeeCC-CCCCC--CHHHhccCCCCCEEEeeCC-cCCCCChhh------------hhcCCcCcEE
Confidence 467899999999987 45665 3343568999999999997 566666543 6677777777
Q ss_pred EEec-ccccccccccCCCCcceEEecCC------------------CCcceecccCchhHhhhccccEEEEecCCCcccc
Q 040122 208 LVAN-QIQHLFDEKVAFPQLGNLRLSGL------------------HKVQHLWKENDESNKAFANLERLEISECSKLQKL 268 (388)
Q Consensus 208 ~l~~-~~~~~~~~~~~~~~L~~L~l~~~------------------~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~ 268 (388)
++++ ....+ ..+.+++|+.|+++++ ..+..++. ...++|+.|++++|....
T Consensus 177 ~L~~N~l~~~--~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~------~~~~~L~~L~L~~n~l~~-- 246 (597)
T 3oja_B 177 QLSSNRLTHV--DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG------PVNVELTILKLQHNNLTD-- 246 (597)
T ss_dssp ECTTSCCSBC--CGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEEC------SCCSCCCEEECCSSCCCC--
T ss_pred ECcCCCCCCc--ChhhhhhhhhhhcccCccccccCCchhheeeccCCccccccc------ccCCCCCEEECCCCCCCC--
Confidence 7776 22222 1334555555555442 12333322 223567777777764332
Q ss_pred cCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEccccccchhhcccccccCCccccccccceEecccCCCcc
Q 040122 269 VPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSLT 348 (388)
Q Consensus 269 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 348 (388)
+..+..+++|+.|+++++ .+....... ...+++|+.|++++|. +..++. ....+++|+.|+++++ .+.
T Consensus 247 ~~~l~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~l~~--------~~~~l~~L~~L~Ls~N-~l~ 314 (597)
T 3oja_B 247 TAWLLNYPGLVEVDLSYN-ELEKIMYHP-FVKMQRLERLYISNNR-LVALNL--------YGQPIPTLKVLDLSHN-HLL 314 (597)
T ss_dssp CGGGGGCTTCSEEECCSS-CCCEEESGG-GTTCSSCCEEECTTSC-CCEEEC--------SSSCCTTCCEEECCSS-CCC
T ss_pred ChhhccCCCCCEEECCCC-ccCCCCHHH-hcCccCCCEEECCCCC-CCCCCc--------ccccCCCCcEEECCCC-CCC
Confidence 245677788888888876 455543332 3577888888888764 333332 1234688888888886 455
Q ss_pred eecCCCccccCCCcceEEeccCCCcccccCCCCCCCCCC
Q 040122 349 SFCLGNYALEFPSLKQVVVRQCPKMKIFSQGLLDTPMLN 387 (388)
Q Consensus 349 ~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~ 387 (388)
.++..... +++|++|++++|+ ++.+| +..+++|+
T Consensus 315 ~i~~~~~~--l~~L~~L~L~~N~-l~~~~--~~~~~~L~ 348 (597)
T 3oja_B 315 HVERNQPQ--FDRLENLYLDHNS-IVTLK--LSTHHTLK 348 (597)
T ss_dssp CCGGGHHH--HTTCSEEECCSSC-CCCCC--CCTTCCCS
T ss_pred ccCccccc--CCCCCEEECCCCC-CCCcC--hhhcCCCC
Confidence 66655433 7889999998876 45554 44455554
No 32
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=1.2e-19 Score=178.65 Aligned_cols=118 Identities=16% Similarity=0.214 Sum_probs=78.1
Q ss_pred hhccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEecccccccee--c
Q 040122 44 DEKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEV--L 121 (388)
Q Consensus 44 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i--~ 121 (388)
..+..+++|++|+++++. +....... ...+++|++|++++| .+...++. .++++++|++|++++|. +..+ +
T Consensus 44 ~~~~~l~~L~~L~Ls~n~-i~~~~~~~---~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~~ 116 (549)
T 2z81_A 44 GDLRACANLQVLILKSSR-INTIEGDA---FYSLGSLEHLDLSDN-HLSSLSSS-WFGPLSSLKYLNLMGNP-YQTLGVT 116 (549)
T ss_dssp STTSSCTTCCEEECTTSC-CCEECTTT---TTTCTTCCEEECTTS-CCCSCCHH-HHTTCTTCCEEECTTCC-CSSSCSS
T ss_pred hhhhcCCcccEEECCCCC-cCccChhh---ccccccCCEEECCCC-ccCccCHH-HhccCCCCcEEECCCCc-ccccchh
Confidence 356677888888888775 55444322 146788888888887 56664443 37788888888888863 3322 1
Q ss_pred ccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccc
Q 040122 122 HLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETF 181 (388)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 181 (388)
.. +..+++|++|+++++..++.+ +...+..+++|++|++.++ .++..
T Consensus 117 ~~----------~~~l~~L~~L~L~~n~~~~~~--~~~~~~~l~~L~~L~L~~n-~l~~~ 163 (549)
T 2z81_A 117 SL----------FPNLTNLQTLRIGNVETFSEI--RRIDFAGLTSLNELEIKAL-SLRNY 163 (549)
T ss_dssp CS----------CTTCTTCCEEEEEESSSCCEE--CTTTTTTCCEEEEEEEEET-TCCEE
T ss_pred hh----------hhccCCccEEECCCCcccccc--CHhhhhcccccCeeeccCC-ccccc
Confidence 11 356788888888877655655 3233667888888888886 45443
No 33
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=2.9e-19 Score=175.79 Aligned_cols=163 Identities=20% Similarity=0.177 Sum_probs=93.2
Q ss_pred cccCCceEEEec-cc-ccc---cccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccc
Q 040122 200 KLKSEENLLVAN-QI-QHL---FDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWH 274 (388)
Q Consensus 200 ~l~~L~~L~l~~-~~-~~~---~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~ 274 (388)
.+++|+.|++++ .. +.. ...++.+++|+.|+++++ .++.++... .....+++|++|++++| .+..+|..+..
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~ 408 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTG-EILLTLKNLTSLDISRN-TFHPMPDSCQW 408 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHH-HHGGGCTTCCEEECTTC-CCCCCCSCCCC
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccch-hhhhcCCCCCEEECCCC-CCccCChhhcc
Confidence 466677777766 11 112 223456677777777764 344432100 01256677888888777 34566766777
Q ss_pred cCCCCEEeeccCcCcccccchhhhcCccccceeeEccccccchhhcccccccCCccccccccceEecccCCCcceecCCC
Q 040122 275 LENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTSFCLGN 354 (388)
Q Consensus 275 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 354 (388)
+++|++|+++++ .++.++.. ..++|+.|++++|. ++.++ ..+++|++|+++++ .++.++...
T Consensus 409 ~~~L~~L~Ls~N-~l~~l~~~----~~~~L~~L~Ls~N~-l~~~~-----------~~l~~L~~L~Ls~N-~l~~ip~~~ 470 (549)
T 2z81_A 409 PEKMRFLNLSST-GIRVVKTC----IPQTLEVLDVSNNN-LDSFS-----------LFLPRLQELYISRN-KLKTLPDAS 470 (549)
T ss_dssp CTTCCEEECTTS-CCSCCCTT----SCTTCSEEECCSSC-CSCCC-----------CCCTTCCEEECCSS-CCSSCCCGG
T ss_pred cccccEEECCCC-Ccccccch----hcCCceEEECCCCC-hhhhc-----------ccCChhcEEECCCC-ccCcCCCcc
Confidence 777888888776 34443221 12456666666663 22221 24577777777776 455665432
Q ss_pred ccccCCCcceEEeccCCCccccc-CCCCCCCCCC
Q 040122 355 YALEFPSLKQVVVRQCPKMKIFS-QGLLDTPMLN 387 (388)
Q Consensus 355 ~~~~~~~L~~L~l~~c~~l~~lp-~~~~~~~~L~ 387 (388)
.+++|++|++++|. ++.+| ..+.++++|+
T Consensus 471 ---~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 500 (549)
T 2z81_A 471 ---LFPVLLVMKISRNQ-LKSVPDGIFDRLTSLQ 500 (549)
T ss_dssp ---GCTTCCEEECCSSC-CCCCCTTGGGGCTTCC
T ss_pred ---cCccCCEEecCCCc-cCCcCHHHHhcCcccC
Confidence 26778888887764 44443 3456666654
No 34
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.81 E-value=1.1e-18 Score=170.63 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=72.3
Q ss_pred ccccEEEEecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEccccccc--hhhcccccccCCc
Q 040122 252 ANLERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIE--QIIQLQVGEEAKD 329 (388)
Q Consensus 252 ~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~~ 329 (388)
.+|+.|++++|.... .+ ....+++|++|+++++ .+...... ...++++|++|++++|.... .++. .
T Consensus 302 ~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~--------~ 369 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVH-ML-CPSKISPFLHLDFSNN-LLTDTVFE-NCGHLTELETLILQMNQLKELSKIAE--------M 369 (520)
T ss_dssp CCCSEEEEESSCCCC-CC-CCSSCCCCCEEECCSS-CCCTTTTT-TCCCCSSCCEEECCSSCCCBHHHHHH--------H
T ss_pred CceeEEEcCCCcccc-cc-chhhCCcccEEEeECC-ccChhhhh-hhccCCCCCEEEccCCccCccccchH--------H
Confidence 458888888875332 22 1257899999999997 45553222 33789999999999986432 2221 1
Q ss_pred cccccccceEecccCCCcceecCCCc-c-------------------ccC-CCcceEEeccCCCcccccCCCCCCCCCC
Q 040122 330 CNVFKELEYLGLDCLPSLTSFCLGNY-A-------------------LEF-PSLKQVVVRQCPKMKIFSQGLLDTPMLN 387 (388)
Q Consensus 330 ~~~~~~L~~L~l~~~~~l~~~~~~~~-~-------------------~~~-~~L~~L~l~~c~~l~~lp~~~~~~~~L~ 387 (388)
...+++|++|+++++..-..++.+.. . ..+ ++|++|++++| +++.+|.++.++++|+
T Consensus 370 ~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~ 447 (520)
T 2z7x_B 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQ 447 (520)
T ss_dssp HTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCC
T ss_pred HhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCC
Confidence 13346666666665432221332210 0 011 46777777765 3557777666666665
No 35
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=4.2e-18 Score=175.81 Aligned_cols=105 Identities=16% Similarity=0.077 Sum_probs=52.1
Q ss_pred cCCceEEEec-c-cccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCC
Q 040122 202 KSEENLLVAN-Q-IQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLE 279 (388)
Q Consensus 202 ~~L~~L~l~~-~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~ 279 (388)
++|+.|++++ . ....+..++.+++|+.|+++++ .+..+....+ ..+++|++|++++|......+..+..+++|+
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-KINKIADEAF---YGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESC-CCCEECTTTT---TTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCC-cCCCCChHHh---cCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence 4566666655 1 1222334455566666666653 3444433322 4455666666666543333344555556666
Q ss_pred EEeeccCcCcccccchhhhcCccccceeeEccc
Q 040122 280 ALKVSKCHELINVLTLSASKNLVNLGRMMIADC 312 (388)
Q Consensus 280 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 312 (388)
+|+++++ .+..++... ...+++|+.|++++|
T Consensus 342 ~L~L~~N-~i~~~~~~~-~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 342 YIDLQKN-HIAIIQDQT-FKFLEKLQTLDLRDN 372 (844)
T ss_dssp EEECCSC-CCCCCCSSC-SCSCCCCCEEEEETC
T ss_pred EEECCCC-CCCccChhh-hcCCCCCCEEECCCC
Confidence 6666554 343333221 234555555555554
No 36
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=4.2e-18 Score=175.76 Aligned_cols=292 Identities=14% Similarity=0.063 Sum_probs=162.5
Q ss_pred hhccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceeccc
Q 040122 44 DEKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHL 123 (388)
Q Consensus 44 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 123 (388)
..+..+++|++|+++++..+..+.... ...+++|++|++++| .+....|.. ++++++|++|++++|.....++..
T Consensus 42 ~~~~~l~~L~~LdLs~n~~~~~i~~~~---f~~L~~L~~L~Ls~N-~l~~~~p~~-~~~l~~L~~L~Ls~n~l~~~~~~~ 116 (844)
T 3j0a_A 42 SSFPFLEQLQLLELGSQYTPLTIDKEA---FRNLPNLRILDLGSS-KIYFLHPDA-FQGLFHLFELRLYFCGLSDAVLKD 116 (844)
T ss_dssp SSCSSCCSCSEEEECTTCCCCEECTTT---TSSCTTCCEEECTTC-CCCEECTTS-SCSCSSCCCEECTTCCCSSCCSTT
T ss_pred hHCcccccCeEEeCCCCCCccccCHHH---hcCCCCCCEEECCCC-cCcccCHhH-ccCCcccCEeeCcCCCCCcccccC
Confidence 345556666666666654333332211 145666666666666 444433333 566666666666665332222221
Q ss_pred ccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccc--
Q 040122 124 EELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKL-- 201 (388)
Q Consensus 124 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l-- 201 (388)
.. +..+++|++|+++++. +.....+ ..++.+++|++|++.++ .++...... +..+
T Consensus 117 ~~--------~~~L~~L~~L~Ls~N~-l~~~~~~-~~~~~L~~L~~L~Ls~N-~i~~~~~~~------------l~~l~~ 173 (844)
T 3j0a_A 117 GY--------FRNLKALTRLDLSKNQ-IRSLYLH-PSFGKLNSLKSIDFSSN-QIFLVCEHE------------LEPLQG 173 (844)
T ss_dssp CC--------CSSCSSCCEEEEESCC-CCCCCCC-GGGGTCSSCCEEEEESS-CCCCCCSGG------------GHHHHH
T ss_pred cc--------ccccCCCCEEECCCCc-ccccccc-hhHhhCCCCCEEECCCC-cCCeeCHHH------------cccccC
Confidence 11 2456666666666653 2332111 12556666666666664 333332221 4444
Q ss_pred cCCceEEEec--ccccccccccCCCC------cceEEecCCCCcceeccc------------------------------
Q 040122 202 KSEENLLVAN--QIQHLFDEKVAFPQ------LGNLRLSGLHKVQHLWKE------------------------------ 243 (388)
Q Consensus 202 ~~L~~L~l~~--~~~~~~~~~~~~~~------L~~L~l~~~~~l~~~~~~------------------------------ 243 (388)
++|+.|+++. .....+..++.+++ |+.|+++++.--...+..
T Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~ 253 (844)
T 3j0a_A 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253 (844)
T ss_dssp CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence 6777777776 22223333333333 888888875211100000
Q ss_pred -----CchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEccccccchh
Q 040122 244 -----NDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQI 318 (388)
Q Consensus 244 -----~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 318 (388)
.+. .-..++|+.|+++++......+..+..+++|+.|+++++ .+...... ....+++|++|++++|.. ..+
T Consensus 254 ~~~~~~f~-~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~-~~~~l~~L~~L~Ls~N~l-~~~ 329 (844)
T 3j0a_A 254 DPDQNTFA-GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-KINKIADE-AFYGLDNLQVLNLSYNLL-GEL 329 (844)
T ss_dssp TGGGTTTT-TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESC-CCCEECTT-TTTTCSSCCEEEEESCCC-SCC
T ss_pred CCChhhhh-ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCC-cCCCCChH-HhcCCCCCCEEECCCCCC-Ccc
Confidence 000 001367888888887655555667788889999999886 45554333 236788999999988753 222
Q ss_pred hcccccccCCccccccccceEecccCCCcceecCCCccccCCCcceEEeccCCCccccc
Q 040122 319 IQLQVGEEAKDCNVFKELEYLGLDCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFS 377 (388)
Q Consensus 319 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp 377 (388)
.. .....+++|++|+++++ .++.++.... ..+++|++|++++|. ++.++
T Consensus 330 ~~-------~~~~~l~~L~~L~L~~N-~i~~~~~~~~-~~l~~L~~L~Ls~N~-l~~i~ 378 (844)
T 3j0a_A 330 YS-------SNFYGLPKVAYIDLQKN-HIAIIQDQTF-KFLEKLQTLDLRDNA-LTTIH 378 (844)
T ss_dssp CS-------CSCSSCTTCCEEECCSC-CCCCCCSSCS-CSCCCCCEEEEETCC-SCCCS
T ss_pred CH-------HHhcCCCCCCEEECCCC-CCCccChhhh-cCCCCCCEEECCCCC-CCccc
Confidence 11 12245688999999887 4555554321 227899999999875 45444
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=2.1e-18 Score=170.27 Aligned_cols=112 Identities=18% Similarity=0.161 Sum_probs=66.7
Q ss_pred HHhhhccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEecccccccee
Q 040122 41 KCYDEKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEV 120 (388)
Q Consensus 41 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i 120 (388)
.+|..+ +++|++|+++++. +..++... ...+++|++|++++| .++.+.+.. +.++++|++|++++| .+..+
T Consensus 45 ~ip~~~--~~~L~~L~Ls~N~-i~~~~~~~---~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~l 115 (562)
T 3a79_B 45 HVPKDL--PPRTKALSLSQNS-ISELRMPD---ISFLSELRVLRLSHN-RIRSLDFHV-FLFNQDLEYLDVSHN-RLQNI 115 (562)
T ss_dssp SCCTTS--CTTCCEEECCSSC-CCCCCGGG---TTTCTTCCEEECCSC-CCCEECTTT-TTTCTTCCEEECTTS-CCCEE
T ss_pred cCCCCC--CCCcCEEECCCCC-ccccChhh---hccCCCccEEECCCC-CCCcCCHHH-hCCCCCCCEEECCCC-cCCcc
Confidence 344443 2677777777665 55433222 145777777777777 566644433 677777778877774 35555
Q ss_pred cccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecC
Q 040122 121 LHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENC 175 (388)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 175 (388)
|.. .+++|++|+++++. +..+..+.. ++.+++|++|+++++
T Consensus 116 p~~------------~l~~L~~L~Ls~N~-l~~l~~p~~-~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 116 SCC------------PMASLRHLDLSFND-FDVLPVCKE-FGNLTKLTFLGLSAA 156 (562)
T ss_dssp CSC------------CCTTCSEEECCSSC-CSBCCCCGG-GGGCTTCCEEEEECS
T ss_pred Ccc------------ccccCCEEECCCCC-ccccCchHh-hcccCcccEEecCCC
Confidence 432 36777777776653 444322222 556677777777664
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=1.9e-18 Score=174.44 Aligned_cols=114 Identities=13% Similarity=0.037 Sum_probs=54.4
Q ss_pred ccEEEEecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEccccccchhhcc-cccccCCcccc
Q 040122 254 LERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQL-QVGEEAKDCNV 332 (388)
Q Consensus 254 L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~~~ 332 (388)
|++|++++|......+..+..+++|++|+++++ .+...... ....+++|+.|+++++.....+... -..+.......
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~ 327 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN-NIQHLFSH-SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSC-CBSEECTT-TTTTCTTCCEEECTTCBCCC------CCEECTTTTTT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCC-ccCccChh-hhcCCCCccEEeccchhhhcccccccccccChhhccc
Confidence 666666665443333444555666666666654 33333222 2245566666666554221111000 00001112234
Q ss_pred ccccceEecccCCCcceecCCCccccCCCcceEEeccCC
Q 040122 333 FKELEYLGLDCLPSLTSFCLGNYALEFPSLKQVVVRQCP 371 (388)
Q Consensus 333 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 371 (388)
+++|++|+++++. +..+..... ..+++|++|++++|.
T Consensus 328 l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 328 LKCLEHLNMEDND-IPGIKSNMF-TGLINLKYLSLSNSF 364 (680)
T ss_dssp CTTCCEEECCSCC-BCCCCTTTT-TTCTTCCEEECTTCB
T ss_pred CCCCCEEECCCCc-cCCCChhHh-ccccCCcEEECCCCc
Confidence 5677777777653 333332211 126788888887765
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=4.5e-18 Score=156.44 Aligned_cols=220 Identities=18% Similarity=0.204 Sum_probs=108.7
Q ss_pred CCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceeccccccccc
Q 040122 50 LDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAK 129 (388)
Q Consensus 50 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~ 129 (388)
++|++|+++++. +..++... ...+++|++|++++| .++...+.. ++++++|++|++++| .+..++.
T Consensus 52 ~~l~~L~L~~n~-i~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~l~~------- 117 (330)
T 1xku_A 52 PDTALLDLQNNK-ITEIKDGD---FKNLKNLHTLILINN-KISKISPGA-FAPLVKLERLYLSKN-QLKELPE------- 117 (330)
T ss_dssp TTCCEEECCSSC-CCCBCTTT---TTTCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSS-CCSBCCS-------
T ss_pred CCCeEEECCCCc-CCEeChhh---hccCCCCCEEECCCC-cCCeeCHHH-hcCCCCCCEEECCCC-cCCccCh-------
Confidence 456666666554 44333211 134566666666665 444433332 556666666666664 2333322
Q ss_pred ccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCccc--ccCCcceeeecccCCCccccccCCceE
Q 040122 130 EEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMET--FTSNSTFVLHMTADNKEPQKLKSEENL 207 (388)
Q Consensus 130 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--~~~~~~~~~~l~~~~~~l~~l~~L~~L 207 (388)
..+++|++|+++++. +..+ +...+..+++|++|++.++ .+.. .... .+..+++|+.|
T Consensus 118 -----~~~~~L~~L~l~~n~-l~~~--~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~------------~~~~l~~L~~L 176 (330)
T 1xku_A 118 -----KMPKTLQELRVHENE-ITKV--RKSVFNGLNQMIVVELGTN-PLKSSGIENG------------AFQGMKKLSYI 176 (330)
T ss_dssp -----SCCTTCCEEECCSSC-CCBB--CHHHHTTCTTCCEEECCSS-CCCGGGBCTT------------GGGGCTTCCEE
T ss_pred -----hhcccccEEECCCCc-cccc--CHhHhcCCccccEEECCCC-cCCccCcChh------------hccCCCCcCEE
Confidence 113566666666542 3333 1122445666666666665 2322 1111 14556666666
Q ss_pred EEec-ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccC
Q 040122 208 LVAN-QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKC 286 (388)
Q Consensus 208 ~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c 286 (388)
++++ ....++... +++|++|+++++ .++.+....+ ..+++|++|++++|......+..+..+++|++|+++++
T Consensus 177 ~l~~n~l~~l~~~~--~~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 177 RIADTNITTIPQGL--PPSLTELHLDGN-KITKVDAASL---KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250 (330)
T ss_dssp ECCSSCCCSCCSSC--CTTCSEEECTTS-CCCEECTGGG---TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred ECCCCccccCCccc--cccCCEEECCCC-cCCccCHHHh---cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC
Confidence 6665 233333322 256666666654 3444432221 44556666666665433333334555666666666665
Q ss_pred cCcccccchhhhcCccccceeeEcccc
Q 040122 287 HELINVLTLSASKNLVNLGRMMIADCK 313 (388)
Q Consensus 287 ~~l~~~~~~~~~~~l~~L~~L~l~~~~ 313 (388)
.+..++. ....+++|++|++++|.
T Consensus 251 -~l~~lp~--~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 251 -KLVKVPG--GLADHKYIQVVYLHNNN 274 (330)
T ss_dssp -CCSSCCT--TTTTCSSCCEEECCSSC
T ss_pred -cCccCCh--hhccCCCcCEEECCCCc
Confidence 3443322 12455666666666553
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=5.4e-18 Score=155.90 Aligned_cols=279 Identities=13% Similarity=0.083 Sum_probs=198.1
Q ss_pred CCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEecccccccee-cccccccc
Q 040122 50 LDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEV-LHLEELSA 128 (388)
Q Consensus 50 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i-~~~~~~~~ 128 (388)
.+++.++++++. +..++.. ..+++++|++++| .++.+++.. ++++++|++|++++|. +..+ +..
T Consensus 31 c~l~~l~~~~~~-l~~lp~~------~~~~l~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~----- 95 (330)
T 1xku_A 31 CHLRVVQCSDLG-LEKVPKD------LPPDTALLDLQNN-KITEIKDGD-FKNLKNLHTLILINNK-ISKISPGA----- 95 (330)
T ss_dssp EETTEEECTTSC-CCSCCCS------CCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSSC-CCCBCTTT-----
T ss_pred CCCeEEEecCCC-ccccCcc------CCCCCeEEECCCC-cCCEeChhh-hccCCCCCEEECCCCc-CCeeCHHH-----
Confidence 368888888665 5543322 3579999999998 677755533 8999999999999964 4444 322
Q ss_pred cccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEE
Q 040122 129 KEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLL 208 (388)
Q Consensus 129 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~ 208 (388)
+..+++|++|+++++. ++.+ +.. ..++|++|+++++ .++..+... +..+++|+.|+
T Consensus 96 -----~~~l~~L~~L~Ls~n~-l~~l--~~~---~~~~L~~L~l~~n-~l~~~~~~~------------~~~l~~L~~L~ 151 (330)
T 1xku_A 96 -----FAPLVKLERLYLSKNQ-LKEL--PEK---MPKTLQELRVHEN-EITKVRKSV------------FNGLNQMIVVE 151 (330)
T ss_dssp -----TTTCTTCCEEECCSSC-CSBC--CSS---CCTTCCEEECCSS-CCCBBCHHH------------HTTCTTCCEEE
T ss_pred -----hcCCCCCCEEECCCCc-CCcc--Chh---hcccccEEECCCC-cccccCHhH------------hcCCccccEEE
Confidence 4678999999999874 5555 333 3489999999997 566555432 67899999999
Q ss_pred Eecc----cccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeec
Q 040122 209 VANQ----IQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVS 284 (388)
Q Consensus 209 l~~~----~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~ 284 (388)
++++ ....+..+..+++|+.|+++++ .++.++.. ..++|++|++++|......+..+..+++|++|+++
T Consensus 152 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 224 (330)
T 1xku_A 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQG------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224 (330)
T ss_dssp CCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSS------CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECC
T ss_pred CCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCcc------ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 9982 2244566778999999999985 56666643 23789999999987555446678889999999999
Q ss_pred cCcCcccccchhhhcCccccceeeEccccccchhhcccccccCCccccccccceEecccCCCcceecCCCcc-----ccC
Q 040122 285 KCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTSFCLGNYA-----LEF 359 (388)
Q Consensus 285 ~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-----~~~ 359 (388)
++ .+...+.. ....+++|++|++++|. +..++. ....+++|++|+++++ .++.++..... ...
T Consensus 225 ~n-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~lp~--------~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~ 292 (330)
T 1xku_A 225 FN-SISAVDNG-SLANTPHLRELHLNNNK-LVKVPG--------GLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKK 292 (330)
T ss_dssp SS-CCCEECTT-TGGGSTTCCEEECCSSC-CSSCCT--------TTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTS
T ss_pred CC-cCceeChh-hccCCCCCCEEECCCCc-CccCCh--------hhccCCCcCEEECCCC-cCCccChhhcCCccccccc
Confidence 87 46665443 23678999999999985 444443 2245789999999987 46666543311 124
Q ss_pred CCcceEEeccCCCcc--cccCCCCCCCCC
Q 040122 360 PSLKQVVVRQCPKMK--IFSQGLLDTPML 386 (388)
Q Consensus 360 ~~L~~L~l~~c~~l~--~lp~~~~~~~~L 386 (388)
++++.+++.++|... .-|.....++++
T Consensus 293 ~~l~~l~l~~N~~~~~~i~~~~f~~~~~l 321 (330)
T 1xku_A 293 ASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321 (330)
T ss_dssp CCCSEEECCSSSSCGGGSCGGGGTTCCCG
T ss_pred ccccceEeecCcccccccCccccccccce
Confidence 789999999988532 223444444443
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=3.4e-18 Score=172.59 Aligned_cols=52 Identities=10% Similarity=-0.027 Sum_probs=29.1
Q ss_pred cccceEecccCCCcceecCCCccccCCCcceEEeccCCCccccc-CCCCCCCCCC
Q 040122 334 KELEYLGLDCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFS-QGLLDTPMLN 387 (388)
Q Consensus 334 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~~~~L~ 387 (388)
++|+.|+++++. ++.+..... ..+++|++|++.+|.....+| ..+.++++|+
T Consensus 381 ~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~ 433 (680)
T 1ziw_A 381 SPLHILNLTKNK-ISKIESDAF-SWLGHLEVLDLGLNEIGQELTGQEWRGLENIF 433 (680)
T ss_dssp SCCCEEECTTSC-CCEECTTTT-TTCTTCCEEECCSSCCEEECCSGGGTTCTTCC
T ss_pred CcCceEECCCCC-CCeEChhhh-hCCCCCCEEeCCCCcCccccCcccccCccccc
Confidence 356666666653 333322211 136788888888877555555 3455555554
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=4.9e-18 Score=156.34 Aligned_cols=292 Identities=15% Similarity=0.087 Sum_probs=196.4
Q ss_pred cceeeecCCCCchhHHHHhhhccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCC
Q 040122 25 GELHHWEGNNLNSTIQKCYDEKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLN 104 (388)
Q Consensus 25 ~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 104 (388)
++.+++.+ ..+..+|..+ +++|++|+++++. +..+.... ...+++|++|++++| .++...+.. +++++
T Consensus 35 l~~l~~~~----~~l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~ 102 (332)
T 2ft3_A 35 LRVVQCSD----LGLKAVPKEI--SPDTTLLDLQNND-ISELRKDD---FKGLQHLYALVLVNN-KISKIHEKA-FSPLR 102 (332)
T ss_dssp TTEEECCS----SCCSSCCSCC--CTTCCEEECCSSC-CCEECTTT---TTTCTTCCEEECCSS-CCCEECGGG-STTCT
T ss_pred CCEEECCC----CCccccCCCC--CCCCeEEECCCCc-CCccCHhH---hhCCCCCcEEECCCC-ccCccCHhH-hhCcC
Confidence 45555555 2333455554 4789999999876 66554322 257899999999998 677755544 88999
Q ss_pred CCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCccc--cc
Q 040122 105 NLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMET--FT 182 (388)
Q Consensus 105 ~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--~~ 182 (388)
+|++|++++| .+..++.. .+++|++|+++++. +..+ +...+..+++|++|++.++ .++. ..
T Consensus 103 ~L~~L~L~~n-~l~~l~~~------------~~~~L~~L~l~~n~-i~~~--~~~~~~~l~~L~~L~l~~n-~l~~~~~~ 165 (332)
T 2ft3_A 103 KLQKLYISKN-HLVEIPPN------------LPSSLVELRIHDNR-IRKV--PKGVFSGLRNMNCIEMGGN-PLENSGFE 165 (332)
T ss_dssp TCCEEECCSS-CCCSCCSS------------CCTTCCEEECCSSC-CCCC--CSGGGSSCSSCCEEECCSC-CCBGGGSC
T ss_pred CCCEEECCCC-cCCccCcc------------ccccCCEEECCCCc-cCcc--CHhHhCCCccCCEEECCCC-ccccCCCC
Confidence 9999999996 45555432 24899999999874 5555 3333678999999999997 4543 22
Q ss_pred CCcceeeecccCCCccccccCCceEEEec-ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEec
Q 040122 183 SNSTFVLHMTADNKEPQKLKSEENLLVAN-QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISE 261 (388)
Q Consensus 183 ~~~~~~~~l~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~ 261 (388)
... +..+ +|+.|++++ ....++... +++|++|+++++ .++.++...+ ..+++|++|++++
T Consensus 166 ~~~------------~~~l-~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n-~i~~~~~~~l---~~l~~L~~L~L~~ 226 (332)
T 2ft3_A 166 PGA------------FDGL-KLNYLRISEAKLTGIPKDL--PETLNELHLDHN-KIQAIELEDL---LRYSKLYRLGLGH 226 (332)
T ss_dssp TTS------------SCSC-CCSCCBCCSSBCSSCCSSS--CSSCSCCBCCSS-CCCCCCTTSS---TTCTTCSCCBCCS
T ss_pred ccc------------ccCC-ccCEEECcCCCCCccCccc--cCCCCEEECCCC-cCCccCHHHh---cCCCCCCEEECCC
Confidence 221 5555 899999988 444454443 379999999985 5666554333 6788999999999
Q ss_pred CCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEccccccchhhcccccccCCc-cccccccceEe
Q 040122 262 CSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKD-CNVFKELEYLG 340 (388)
Q Consensus 262 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~ 340 (388)
|......+..+..+++|++|+++++ .+..++.. ...+++|++|++++|. ++.++.. .+.... ...++.|+.|+
T Consensus 227 N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~--l~~l~~L~~L~l~~N~-l~~~~~~--~~~~~~~~~~~~~l~~L~ 300 (332)
T 2ft3_A 227 NQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAG--LPDLKLLQVVYLHTNN-ITKVGVN--DFCPVGFGVKRAYYNGIS 300 (332)
T ss_dssp SCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTT--GGGCTTCCEEECCSSC-CCBCCTT--SSSCSSCCSSSCCBSEEE
T ss_pred CcCCcCChhHhhCCCCCCEEECCCC-cCeecChh--hhcCccCCEEECCCCC-CCccChh--HccccccccccccccceE
Confidence 8655444456788999999999987 56665543 3678999999999875 4444321 111100 12257899999
Q ss_pred cccCCCcc-eecCCCccccCCCcceEEeccCC
Q 040122 341 LDCLPSLT-SFCLGNYALEFPSLKQVVVRQCP 371 (388)
Q Consensus 341 l~~~~~l~-~~~~~~~~~~~~~L~~L~l~~c~ 371 (388)
+.+++... .+.... ...+++|+.+++.+|.
T Consensus 301 l~~N~~~~~~~~~~~-~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 301 LFNNPVPYWEVQPAT-FRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCSSSSCGGGSCGGG-GTTBCCSTTEEC----
T ss_pred eecCcccccccCccc-ccccchhhhhhccccc
Confidence 99986431 222222 1237899999998875
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=1.1e-18 Score=159.20 Aligned_cols=253 Identities=12% Similarity=0.042 Sum_probs=133.8
Q ss_pred CCccEEEecCCCCCcc--cCChhhhhcCCCCcEEEeccccccc-eecccccccccccccCCcCccccEeecccCcccccc
Q 040122 78 NNLAELVVDDSTNMSS--AIPANLLRCLNNLEWLAVRNCDSLE-EVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRF 154 (388)
Q Consensus 78 ~~L~~L~l~~~~~l~~--~~~~~~~~~l~~L~~L~l~~~~~l~-~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 154 (388)
.+++.|+++++ .+.. ..|.. +.++++|++|++++++.+. .+|.. +..+++|++|+++++.....+
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~----------l~~l~~L~~L~Ls~n~l~~~~ 117 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPA----------IAKLTQLHYLYITHTNVSGAI 117 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGG----------GGGCTTCSEEEEEEECCEEEC
T ss_pred ceEEEEECCCC-CccCCcccChh-HhCCCCCCeeeCCCCCcccccCChh----------HhcCCCCCEEECcCCeeCCcC
Confidence 34555555555 3332 12222 5555556666665422222 23222 234555555655554321122
Q ss_pred cCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEec-cc-ccccccccCCC-CcceEEe
Q 040122 155 CNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVAN-QI-QHLFDEKVAFP-QLGNLRL 231 (388)
Q Consensus 155 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~-~~-~~~~~~~~~~~-~L~~L~l 231 (388)
+. .+..+++|++|+++++ .++...+. .+..+++|+.|++++ .. +.++..++.++ +|+.|++
T Consensus 118 --p~-~~~~l~~L~~L~Ls~N-~l~~~~p~------------~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L 181 (313)
T 1ogq_A 118 --PD-FLSQIKTLVTLDFSYN-ALSGTLPP------------SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181 (313)
T ss_dssp --CG-GGGGCTTCCEEECCSS-EEESCCCG------------GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEEC
T ss_pred --CH-HHhCCCCCCEEeCCCC-ccCCcCCh------------HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEEC
Confidence 11 1445556666666554 33321111 145556666666655 22 24445555565 6777777
Q ss_pred cCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEcc
Q 040122 232 SGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIAD 311 (388)
Q Consensus 232 ~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 311 (388)
+++ .++...+..+ ..++ |++|++++|......+..+..+++|+.|+++++. +...... ...+++|++|++++
T Consensus 182 ~~N-~l~~~~~~~~---~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~--~~~l~~L~~L~Ls~ 253 (313)
T 1ogq_A 182 SRN-RLTGKIPPTF---ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-LAFDLGK--VGLSKNLNGLDLRN 253 (313)
T ss_dssp CSS-EEEEECCGGG---GGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE-ECCBGGG--CCCCTTCCEEECCS
T ss_pred cCC-eeeccCChHH---hCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc-eeeecCc--ccccCCCCEEECcC
Confidence 764 3342222211 3334 7777777776555556666777788888887763 3322221 25567788888877
Q ss_pred ccccchhhcccccccCCccccccccceEecccCCCcceecCCCccccCCCcceEEeccCCCccccc
Q 040122 312 CKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFS 377 (388)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp 377 (388)
|.....++. ....+++|++|+++++.--..++.. . .+++|+.+++.+++.+...|
T Consensus 254 N~l~~~~p~--------~l~~l~~L~~L~Ls~N~l~~~ip~~-~--~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 254 NRIYGTLPQ--------GLTQLKFLHSLNVSFNNLCGEIPQG-G--NLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp SCCEECCCG--------GGGGCTTCCEEECCSSEEEEECCCS-T--TGGGSCGGGTCSSSEEESTT
T ss_pred CcccCcCCh--------HHhcCcCCCEEECcCCcccccCCCC-c--cccccChHHhcCCCCccCCC
Confidence 754433333 2245677888888776433355543 2 26788888888877666554
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.77 E-value=5.1e-18 Score=154.87 Aligned_cols=250 Identities=14% Similarity=0.104 Sum_probs=179.9
Q ss_pred CCcceEEecCccccc---eeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccc
Q 040122 50 LDINRLQLSHFPRLQ---EIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEEL 126 (388)
Q Consensus 50 ~~L~~L~l~~~~~l~---~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~ 126 (388)
.+++.|+++++. +. .++... ..+++|++|+++++..+....|.. ++++++|++|++++|.....+|..
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l----~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~--- 120 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSL----ANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDF--- 120 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGG----GGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGG---
T ss_pred ceEEEEECCCCC-ccCCcccChhH----hCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHH---
Confidence 579999999876 54 233333 679999999999633666545554 899999999999997544455543
Q ss_pred cccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcc-cccCCcceeeecccCCCcccccc-CC
Q 040122 127 SAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDME-TFTSNSTFVLHMTADNKEPQKLK-SE 204 (388)
Q Consensus 127 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~l~~~~~~l~~l~-~L 204 (388)
+..+++|++|+++++.....+ + ..+..+++|++|++.++ .++ .++.. +..++ +|
T Consensus 121 -------~~~l~~L~~L~Ls~N~l~~~~--p-~~~~~l~~L~~L~L~~N-~l~~~~p~~-------------l~~l~~~L 176 (313)
T 1ogq_A 121 -------LSQIKTLVTLDFSYNALSGTL--P-PSISSLPNLVGITFDGN-RISGAIPDS-------------YGSFSKLF 176 (313)
T ss_dssp -------GGGCTTCCEEECCSSEEESCC--C-GGGGGCTTCCEEECCSS-CCEEECCGG-------------GGCCCTTC
T ss_pred -------HhCCCCCCEEeCCCCccCCcC--C-hHHhcCCCCCeEECcCC-cccCcCCHH-------------HhhhhhcC
Confidence 466899999999987533233 2 23778999999999997 455 44433 67777 99
Q ss_pred ceEEEec--ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEe
Q 040122 205 ENLLVAN--QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALK 282 (388)
Q Consensus 205 ~~L~l~~--~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~ 282 (388)
+.|++++ ..+..+..++.++ |+.|+++++ .++......+ ..+++|+.|++++|......+ .+..+++|++|+
T Consensus 177 ~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~ 250 (313)
T 1ogq_A 177 TSMTISRNRLTGKIPPTFANLN-LAFVDLSRN-MLEGDASVLF---GSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLD 250 (313)
T ss_dssp CEEECCSSEEEEECCGGGGGCC-CSEEECCSS-EEEECCGGGC---CTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEE
T ss_pred cEEECcCCeeeccCChHHhCCc-ccEEECcCC-cccCcCCHHH---hcCCCCCEEECCCCceeeecC-cccccCCCCEEE
Confidence 9999998 2335666666666 999999985 4554433322 678999999999986544444 477789999999
Q ss_pred eccCcCcccccchhhhcCccccceeeEccccccchhhcccccccCCccccccccceEecccCCCcce
Q 040122 283 VSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTS 349 (388)
Q Consensus 283 l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 349 (388)
++++ .+...... ....+++|++|++++|...+.++.. ..+++|+.+++.+++.+..
T Consensus 251 Ls~N-~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~ip~~---------~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 251 LRNN-RIYGTLPQ-GLTQLKFLHSLNVSFNNLCGEIPQG---------GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCSS-CCEECCCG-GGGGCTTCCEEECCSSEEEEECCCS---------TTGGGSCGGGTCSSSEEES
T ss_pred CcCC-cccCcCCh-HHhcCcCCCEEECcCCcccccCCCC---------ccccccChHHhcCCCCccC
Confidence 9987 45533222 3467899999999999765555441 4578899999998875543
No 45
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=1.8e-17 Score=158.58 Aligned_cols=235 Identities=15% Similarity=0.139 Sum_probs=176.2
Q ss_pred HHHHhhhccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccc
Q 040122 39 IQKCYDEKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLE 118 (388)
Q Consensus 39 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 118 (388)
+..+|..+ .++++.|+++++. +..+.... ...+++|++|++++| .+..+.+.. +.++++|++|++++| .+.
T Consensus 55 l~~iP~~~--~~~l~~L~L~~n~-i~~~~~~~---~~~l~~L~~L~Ls~n-~i~~i~~~~-~~~l~~L~~L~L~~n-~l~ 125 (440)
T 3zyj_A 55 LREVPDGI--STNTRLLNLHENQ-IQIIKVNS---FKHLRHLEILQLSRN-HIRTIEIGA-FNGLANLNTLELFDN-RLT 125 (440)
T ss_dssp CSSCCSCC--CTTCSEEECCSCC-CCEECTTT---TSSCSSCCEEECCSS-CCCEECGGG-GTTCSSCCEEECCSS-CCS
T ss_pred cCcCCCCC--CCCCcEEEccCCc-CCeeCHHH---hhCCCCCCEEECCCC-cCCccChhh-ccCCccCCEEECCCC-cCC
Confidence 44455554 3789999999876 66554333 256899999999998 677655433 889999999999996 455
Q ss_pred eecccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCcc
Q 040122 119 EVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEP 198 (388)
Q Consensus 119 ~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l 198 (388)
.++... +..+++|++|+++++. ++.+ +...+..+++|++|++.+|..+..++... +
T Consensus 126 ~~~~~~---------~~~l~~L~~L~L~~N~-i~~~--~~~~~~~l~~L~~L~l~~~~~l~~i~~~~------------~ 181 (440)
T 3zyj_A 126 TIPNGA---------FVYLSKLKELWLRNNP-IESI--PSYAFNRIPSLRRLDLGELKRLSYISEGA------------F 181 (440)
T ss_dssp SCCTTT---------SCSCSSCCEEECCSCC-CCEE--CTTTTTTCTTCCEEECCCCTTCCEECTTT------------T
T ss_pred eeCHhH---------hhccccCceeeCCCCc-cccc--CHHHhhhCcccCEeCCCCCCCcceeCcch------------h
Confidence 554321 4668999999998864 5555 33336789999999999988888777653 7
Q ss_pred ccccCCceEEEec-ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCC
Q 040122 199 QKLKSEENLLVAN-QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLEN 277 (388)
Q Consensus 199 ~~l~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~ 277 (388)
.++++|+.|++++ ....+ +.+..+++|+.|+++++ .++.+....+ ..+++|++|+++++......+..+..+++
T Consensus 182 ~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 256 (440)
T 3zyj_A 182 EGLSNLRYLNLAMCNLREI-PNLTPLIKLDELDLSGN-HLSAIRPGSF---QGLMHLQKLWMIQSQIQVIERNAFDNLQS 256 (440)
T ss_dssp TTCSSCCEEECTTSCCSSC-CCCTTCSSCCEEECTTS-CCCEECTTTT---TTCTTCCEEECTTCCCCEECTTSSTTCTT
T ss_pred hcccccCeecCCCCcCccc-cccCCCcccCEEECCCC-ccCccChhhh---ccCccCCEEECCCCceeEEChhhhcCCCC
Confidence 8899999999998 33344 35778899999999986 6777755543 67889999999998665555667788899
Q ss_pred CCEEeeccCcCcccccchhhhcCccccceeeEcccc
Q 040122 278 LEALKVSKCHELINVLTLSASKNLVNLGRMMIADCK 313 (388)
Q Consensus 278 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 313 (388)
|+.|+++++ .++.++.. ....+++|+.|++++|+
T Consensus 257 L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 257 LVEINLAHN-NLTLLPHD-LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCEEECTTS-CCCCCCTT-TTSSCTTCCEEECCSSC
T ss_pred CCEEECCCC-CCCccChh-HhccccCCCEEEcCCCC
Confidence 999999986 67766544 33678999999998875
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=1.4e-17 Score=159.88 Aligned_cols=235 Identities=14% Similarity=0.100 Sum_probs=174.8
Q ss_pred HHHHhhhccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccc
Q 040122 39 IQKCYDEKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLE 118 (388)
Q Consensus 39 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 118 (388)
+..+|..+ .+++++|+++++. +..+.... ...+++|++|++++| .+..+++.. +.++++|++|++++| .+.
T Consensus 66 l~~iP~~~--~~~l~~L~L~~n~-i~~~~~~~---~~~l~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~ 136 (452)
T 3zyi_A 66 LSEVPQGI--PSNTRYLNLMENN-IQMIQADT---FRHLHHLEVLQLGRN-SIRQIEVGA-FNGLASLNTLELFDN-WLT 136 (452)
T ss_dssp CSSCCSCC--CTTCSEEECCSSC-CCEECTTT---TTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCS
T ss_pred cCccCCCC--CCCccEEECcCCc-CceECHHH---cCCCCCCCEEECCCC-ccCCcChhh-ccCcccCCEEECCCC-cCC
Confidence 33455443 3689999999876 66543332 256899999999998 677755444 888999999999996 455
Q ss_pred eecccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCcc
Q 040122 119 EVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEP 198 (388)
Q Consensus 119 ~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l 198 (388)
.++... +..+++|++|+++++. ++.+ +...+..+++|++|++.+|..+..++... +
T Consensus 137 ~~~~~~---------~~~l~~L~~L~L~~N~-l~~~--~~~~~~~l~~L~~L~l~~~~~l~~i~~~~------------~ 192 (452)
T 3zyi_A 137 VIPSGA---------FEYLSKLRELWLRNNP-IESI--PSYAFNRVPSLMRLDLGELKKLEYISEGA------------F 192 (452)
T ss_dssp BCCTTT---------SSSCTTCCEEECCSCC-CCEE--CTTTTTTCTTCCEEECCCCTTCCEECTTT------------T
T ss_pred ccChhh---------hcccCCCCEEECCCCC-ccee--CHhHHhcCCcccEEeCCCCCCccccChhh------------c
Confidence 554321 3568999999998874 5555 33336789999999999988888877653 7
Q ss_pred ccccCCceEEEec-ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCC
Q 040122 199 QKLKSEENLLVAN-QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLEN 277 (388)
Q Consensus 199 ~~l~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~ 277 (388)
..+++|+.|++++ ....+ +.+..+++|+.|+++++ .++.+....+ ..+++|+.|++++|......+..+..+++
T Consensus 193 ~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 267 (452)
T 3zyi_A 193 EGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGN-HFPEIRPGSF---HGLSSLKKLWVMNSQVSLIERNAFDGLAS 267 (452)
T ss_dssp TTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTS-CCSEECGGGG---TTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCCCEEECCCCccccc-ccccccccccEEECcCC-cCcccCcccc---cCccCCCEEEeCCCcCceECHHHhcCCCC
Confidence 7899999999998 33333 45778899999999985 5666654433 67889999999998766555667788899
Q ss_pred CCEEeeccCcCcccccchhhhcCccccceeeEcccc
Q 040122 278 LEALKVSKCHELINVLTLSASKNLVNLGRMMIADCK 313 (388)
Q Consensus 278 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 313 (388)
|+.|+++++ .++.++.. ....+++|+.|++++|+
T Consensus 268 L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 268 LVELNLAHN-NLSSLPHD-LFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCEEECCSS-CCSCCCTT-SSTTCTTCCEEECCSSC
T ss_pred CCEEECCCC-cCCccChH-HhccccCCCEEEccCCC
Confidence 999999987 67666543 33678999999998875
No 47
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=1.9e-17 Score=148.94 Aligned_cols=205 Identities=18% Similarity=0.163 Sum_probs=117.1
Q ss_pred cCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccC
Q 040122 77 FNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCN 156 (388)
Q Consensus 77 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 156 (388)
.++|++|+++++ .++.+++.. +.++++|++|++++| .+..+.... +..+++|++|+++++..++.+
T Consensus 31 ~~~l~~L~l~~n-~i~~~~~~~-~~~~~~L~~L~l~~n-~l~~~~~~~---------~~~l~~L~~L~l~~n~~l~~~-- 96 (285)
T 1ozn_A 31 PAASQRIFLHGN-RISHVPAAS-FRACRNLTILWLHSN-VLARIDAAA---------FTGLALLEQLDLSDNAQLRSV-- 96 (285)
T ss_dssp CTTCSEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCCEECTTT---------TTTCTTCCEEECCSCTTCCCC--
T ss_pred CCCceEEEeeCC-cCCccCHHH-cccCCCCCEEECCCC-ccceeCHhh---------cCCccCCCEEeCCCCCCcccc--
Confidence 345555555555 344433222 455555666666553 233331110 234555566666555434443
Q ss_pred CCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEec-cccccc-ccccCCCCcceEEecCC
Q 040122 157 FTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVAN-QIQHLF-DEKVAFPQLGNLRLSGL 234 (388)
Q Consensus 157 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~-~~~~~~-~~~~~~~~L~~L~l~~~ 234 (388)
+...+..+++|++|++.++ .++..+... +..+++|+.|++++ ....++ ..++.+++|+.|+++++
T Consensus 97 ~~~~~~~l~~L~~L~l~~n-~l~~~~~~~------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 97 DPATFHGLGRLHTLHLDRC-GLQELGPGL------------FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp CTTTTTTCTTCCEEECTTS-CCCCCCTTT------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CHHHhcCCcCCCEEECCCC-cCCEECHhH------------hhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC
Confidence 1222445566666666654 344333221 45556666666655 222222 22456778888888774
Q ss_pred CCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEccccc
Q 040122 235 HKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKM 314 (388)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 314 (388)
.++.++...+ ..+++|++|++++|......+..+..+++|+.|+++++ .++.++.. ....+++|++|++++|+.
T Consensus 164 -~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 164 -RISSVPERAF---RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTE-ALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp -CCCEECTTTT---TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHH-HHTTCTTCCEEECCSSCE
T ss_pred -cccccCHHHh---cCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHH-HcccCcccCEEeccCCCc
Confidence 5666655432 56778888888887655555677778888999998886 56665433 336788899999888764
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.73 E-value=8.5e-17 Score=149.33 Aligned_cols=278 Identities=15% Similarity=0.106 Sum_probs=178.5
Q ss_pred cCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccc
Q 040122 47 IGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEEL 126 (388)
Q Consensus 47 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~ 126 (388)
..++.....+.++.. ++.++... .++|++|++++| .++.+++.. +.++++|++|++++| .+..++...
T Consensus 28 ~~C~~~~~c~~~~~~-l~~iP~~~------~~~L~~L~l~~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~-- 95 (353)
T 2z80_A 28 LSCDRNGICKGSSGS-LNSIPSGL------TEAVKSLDLSNN-RITYISNSD-LQRCVNLQALVLTSN-GINTIEEDS-- 95 (353)
T ss_dssp CEECTTSEEECCSTT-CSSCCTTC------CTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECTTS-CCCEECTTT--
T ss_pred CCCCCCeEeeCCCCC-cccccccc------cccCcEEECCCC-cCcccCHHH-hccCCCCCEEECCCC-ccCccCHhh--
Confidence 344555556665443 55444333 468888988887 566655433 788888999999886 455543211
Q ss_pred cccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCce
Q 040122 127 SAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEEN 206 (388)
Q Consensus 127 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~ 206 (388)
+..+++|++|+++++ .++.+ +...+..+++|++|+++++ .++.++.... +..+++|+.
T Consensus 96 -------~~~l~~L~~L~Ls~n-~l~~~--~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~-----------~~~l~~L~~ 153 (353)
T 2z80_A 96 -------FSSLGSLEHLDLSYN-YLSNL--SSSWFKPLSSLTFLNLLGN-PYKTLGETSL-----------FSHLTKLQI 153 (353)
T ss_dssp -------TTTCTTCCEEECCSS-CCSSC--CHHHHTTCTTCSEEECTTC-CCSSSCSSCS-----------CTTCTTCCE
T ss_pred -------cCCCCCCCEEECCCC-cCCcC--CHhHhCCCccCCEEECCCC-CCcccCchhh-----------hccCCCCcE
Confidence 356788888888876 34554 2222567888999998886 5666655222 677888888
Q ss_pred EEEecc--cccc-cccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCC-ccccCCCCEEe
Q 040122 207 LLVANQ--IQHL-FDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPP-SWHLENLEALK 282 (388)
Q Consensus 207 L~l~~~--~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~-~~~~~~L~~L~ 282 (388)
|+++++ ...+ +..++.+++|++|+++++ .++......+ ..+++|++|+++++.. ..++.. +..+++|++|+
T Consensus 154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l---~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~ 228 (353)
T 2z80_A 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSL---KSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLE 228 (353)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTT---TTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEE
T ss_pred EECCCCccccccCHHHccCCCCCCEEECCCC-CcCccCHHHH---hccccCCeecCCCCcc-ccchhhhhhhcccccEEE
Confidence 888873 3333 345677889999999885 4555543332 6778999999998763 444432 23578999999
Q ss_pred eccCcCcccccchh--hhcCccccceeeEccccccc----hhhcccccccCCccccccccceEecccCCCcceecCCCcc
Q 040122 283 VSKCHELINVLTLS--ASKNLVNLGRMMIADCKMIE----QIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTSFCLGNYA 356 (388)
Q Consensus 283 l~~c~~l~~~~~~~--~~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 356 (388)
++++ .++...... .......++.+++.++.... .++. ....+++|++|+++++ .++.++.+..
T Consensus 229 L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~--------~l~~l~~L~~L~Ls~N-~l~~i~~~~~- 297 (353)
T 2z80_A 229 LRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK--------LLNQISGLLELEFSRN-QLKSVPDGIF- 297 (353)
T ss_dssp EESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH--------HHHTCTTCCEEECCSS-CCCCCCTTTT-
T ss_pred CCCC-ccccccccccccccccchhhccccccccccCcchhhhHH--------HHhcccCCCEEECCCC-CCCccCHHHH-
Confidence 9886 444433221 12345667777777654221 1211 1245689999999987 5777776541
Q ss_pred ccCCCcceEEeccCCCcc
Q 040122 357 LEFPSLKQVVVRQCPKMK 374 (388)
Q Consensus 357 ~~~~~L~~L~l~~c~~l~ 374 (388)
..+++|++|++.+|+-..
T Consensus 298 ~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 298 DRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp TTCTTCCEEECCSSCBCC
T ss_pred hcCCCCCEEEeeCCCccC
Confidence 127999999999887443
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=5.8e-17 Score=147.34 Aligned_cols=245 Identities=18% Similarity=0.147 Sum_probs=142.4
Q ss_pred cceeeecCCCCchhHHHHhhhccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccC--Chhhhhc
Q 040122 25 GELHHWEGNNLNSTIQKCYDEKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAI--PANLLRC 102 (388)
Q Consensus 25 ~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~ 102 (388)
|..+++.+ ..++.+|..+ +++|++|+++++. +..++... ...+++|++|++++| .++... +.. +..
T Consensus 9 ~~~l~c~~----~~l~~ip~~~--~~~l~~L~L~~n~-l~~i~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~~~-~~~ 76 (306)
T 2z66_A 9 GTEIRCNS----KGLTSVPTGI--PSSATRLELESNK-LQSLPHGV---FDKLTQLTKLSLSSN-GLSFKGCCSQS-DFG 76 (306)
T ss_dssp TTEEECCS----SCCSSCCSCC--CTTCCEEECCSSC-CCCCCTTT---TTTCTTCSEEECCSS-CCCEEEEEEHH-HHS
T ss_pred CCEEEcCC----CCcccCCCCC--CCCCCEEECCCCc-cCccCHhH---hhccccCCEEECCCC-ccCcccCcccc-ccc
Confidence 34444444 2333444433 3678888888765 55444322 145788888888877 444321 222 567
Q ss_pred CCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCccccc
Q 040122 103 LNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFT 182 (388)
Q Consensus 103 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 182 (388)
+++|++|++++| .+..++.. +..+++|++|+++++. +..+... ..+..+++|++|+++++ .+....
T Consensus 77 ~~~L~~L~Ls~n-~i~~l~~~----------~~~l~~L~~L~l~~n~-l~~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~ 142 (306)
T 2z66_A 77 TTSLKYLDLSFN-GVITMSSN----------FLGLEQLEHLDFQHSN-LKQMSEF-SVFLSLRNLIYLDISHT-HTRVAF 142 (306)
T ss_dssp CSCCCEEECCSC-SEEEEEEE----------EETCTTCCEEECTTSE-EESSTTT-TTTTTCTTCCEEECTTS-CCEECS
T ss_pred ccccCEEECCCC-ccccChhh----------cCCCCCCCEEECCCCc-ccccccc-hhhhhccCCCEEECCCC-cCCccc
Confidence 888888888885 34444432 2457888888887753 3444211 22567888888888886 444443
Q ss_pred CCcceeeecccCCCccccccCCceEEEec-ccc--cccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEE
Q 040122 183 SNSTFVLHMTADNKEPQKLKSEENLLVAN-QIQ--HLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEI 259 (388)
Q Consensus 183 ~~~~~~~~l~~~~~~l~~l~~L~~L~l~~-~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i 259 (388)
... +..+++|+.|++++ ... ..+..+..+++|+.|+++++ .++.+....+ ..+++|++|++
T Consensus 143 ~~~------------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L 206 (306)
T 2z66_A 143 NGI------------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAF---NSLSSLQVLNM 206 (306)
T ss_dssp TTT------------TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTT---TTCTTCCEEEC
T ss_pred hhh------------cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHh---cCCCCCCEEEC
Confidence 332 56677777777776 222 34555666777777777764 4555533322 45666777777
Q ss_pred ecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCc-cccceeeEcccc
Q 040122 260 SECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNL-VNLGRMMIADCK 313 (388)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l-~~L~~L~l~~~~ 313 (388)
++|......+..+..+++|++|+++++ .+.......+ ..+ ++|++|++++|+
T Consensus 207 ~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 207 SHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQEL-QHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTSCCSBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSC-CCCCTTCCEEECTTCC
T ss_pred CCCccCccChhhccCcccCCEeECCCC-CCcccCHHHH-HhhhccCCEEEccCCC
Confidence 766433322224555667777777665 3433322222 333 366677766654
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.72 E-value=2e-16 Score=156.52 Aligned_cols=139 Identities=19% Similarity=0.083 Sum_probs=81.4
Q ss_pred ccCCceEEEec-ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCC
Q 040122 201 LKSEENLLVAN-QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLE 279 (388)
Q Consensus 201 l~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~ 279 (388)
+++|+.|++++ ....++ ..+++|+.|+++++ .++.++ ..+++|+.|++++|. +..++. .+++|+
T Consensus 160 ~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N-~l~~l~-------~~~~~L~~L~L~~N~-l~~l~~---~~~~L~ 224 (622)
T 3g06_A 160 PSELCKLWAYNNQLTSLP---MLPSGLQELSVSDN-QLASLP-------TLPSELYKLWAYNNR-LTSLPA---LPSGLK 224 (622)
T ss_dssp CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCC-------CCCTTCCEEECCSSC-CSSCCC---CCTTCC
T ss_pred cCCCCEEECCCCCCCCCc---ccCCCCcEEECCCC-CCCCCC-------CccchhhEEECcCCc-ccccCC---CCCCCC
Confidence 34566666665 222333 33567777777764 455544 224667777777653 334443 246777
Q ss_pred EEeeccCcCcccccchhhhcCccccceeeEccccccchhhcccccccCCccccccccceEecccCCCcceecCCCccccC
Q 040122 280 ALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTSFCLGNYALEF 359 (388)
Q Consensus 280 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 359 (388)
+|+++++ .++.++ ..+++|+.|++++|. ++.++. .+++|++|+++++ .++.++..... +
T Consensus 225 ~L~Ls~N-~L~~lp-----~~l~~L~~L~Ls~N~-L~~lp~-----------~~~~L~~L~Ls~N-~L~~lp~~l~~--l 283 (622)
T 3g06_A 225 ELIVSGN-RLTSLP-----VLPSELKELMVSGNR-LTSLPM-----------LPSGLLSLSVYRN-QLTRLPESLIH--L 283 (622)
T ss_dssp EEECCSS-CCSCCC-----CCCTTCCEEECCSSC-CSCCCC-----------CCTTCCEEECCSS-CCCSCCGGGGG--S
T ss_pred EEEccCC-ccCcCC-----CCCCcCcEEECCCCC-CCcCCc-----------ccccCcEEeCCCC-CCCcCCHHHhh--c
Confidence 7777765 455543 345677777777763 333322 3467778888776 46666654433 6
Q ss_pred CCcceEEeccCCCccc
Q 040122 360 PSLKQVVVRQCPKMKI 375 (388)
Q Consensus 360 ~~L~~L~l~~c~~l~~ 375 (388)
++|+.|++.+|+--..
T Consensus 284 ~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 284 SSETTVNLEGNPLSER 299 (622)
T ss_dssp CTTCEEECCSCCCCHH
T ss_pred cccCEEEecCCCCCCc
Confidence 7888888877764433
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.72 E-value=3.6e-16 Score=149.46 Aligned_cols=225 Identities=17% Similarity=0.168 Sum_probs=161.6
Q ss_pred cCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccC
Q 040122 77 FNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCN 156 (388)
Q Consensus 77 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 156 (388)
.++++.|++++| .++.+++.. +.++++|++|++++| .+..++... +..+++|++|+++++ .++.+
T Consensus 63 ~~~l~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~Ls~n-~i~~i~~~~---------~~~l~~L~~L~L~~n-~l~~~-- 127 (440)
T 3zyj_A 63 STNTRLLNLHEN-QIQIIKVNS-FKHLRHLEILQLSRN-HIRTIEIGA---------FNGLANLNTLELFDN-RLTTI-- 127 (440)
T ss_dssp CTTCSEEECCSC-CCCEECTTT-TSSCSSCCEEECCSS-CCCEECGGG---------GTTCSSCCEEECCSS-CCSSC--
T ss_pred CCCCcEEEccCC-cCCeeCHHH-hhCCCCCCEEECCCC-cCCccChhh---------ccCCccCCEEECCCC-cCCee--
Confidence 578999999988 677755444 889999999999996 455553211 466899999999886 45665
Q ss_pred CCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEec--ccccccc-cccCCCCcceEEecC
Q 040122 157 FTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVAN--QIQHLFD-EKVAFPQLGNLRLSG 233 (388)
Q Consensus 157 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~--~~~~~~~-~~~~~~~L~~L~l~~ 233 (388)
+...+..+++|++|+++++ .++.++... +..+++|+.|++++ ....++. .+..+++|+.|++++
T Consensus 128 ~~~~~~~l~~L~~L~L~~N-~i~~~~~~~------------~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 128 PNGAFVYLSKLKELWLRNN-PIESIPSYA------------FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194 (440)
T ss_dssp CTTTSCSCSSCCEEECCSC-CCCEECTTT------------TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred CHhHhhccccCceeeCCCC-cccccCHHH------------hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence 3333678899999999997 577666543 67889999999987 2333332 466788999999988
Q ss_pred CCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEcccc
Q 040122 234 LHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCK 313 (388)
Q Consensus 234 ~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 313 (388)
+ .++.++.. ..+++|++|++++|......+..+..+++|+.|+++++ .+..+.... ..++++|+.|++++|.
T Consensus 195 n-~l~~~~~~-----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 195 C-NLREIPNL-----TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNA-FDNLQSLVEINLAHNN 266 (440)
T ss_dssp S-CCSSCCCC-----TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTS-STTCTTCCEEECTTSC
T ss_pred C-cCcccccc-----CCCcccCEEECCCCccCccChhhhccCccCCEEECCCC-ceeEEChhh-hcCCCCCCEEECCCCC
Confidence 5 56666532 67788999999998655555677888899999999886 566654432 3678899999998874
Q ss_pred ccchhhcccccccCCccccccccceEecccCC
Q 040122 314 MIEQIIQLQVGEEAKDCNVFKELEYLGLDCLP 345 (388)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 345 (388)
++.++. . ....+++|+.|++.+++
T Consensus 267 -l~~~~~---~----~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 267 -LTLLPH---D----LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp -CCCCCT---T----TTSSCTTCCEEECCSSC
T ss_pred -CCccCh---h----HhccccCCCEEEcCCCC
Confidence 333332 0 12346788888887654
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.72 E-value=3.4e-16 Score=150.00 Aligned_cols=80 Identities=21% Similarity=0.237 Sum_probs=50.4
Q ss_pred CCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccCC
Q 040122 78 NNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNF 157 (388)
Q Consensus 78 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 157 (388)
++|++|++++| .++.++ . ++++++|++|++++| .+..+|. ..++|++|+++++ .++.+ +
T Consensus 131 ~~L~~L~L~~n-~l~~lp-~--~~~l~~L~~L~l~~N-~l~~lp~-------------~~~~L~~L~L~~n-~l~~l--~ 189 (454)
T 1jl5_A 131 PLLEYLGVSNN-QLEKLP-E--LQNSSFLKIIDVDNN-SLKKLPD-------------LPPSLEFIAAGNN-QLEEL--P 189 (454)
T ss_dssp TTCCEEECCSS-CCSSCC-C--CTTCTTCCEEECCSS-CCSCCCC-------------CCTTCCEEECCSS-CCSSC--C
T ss_pred CCCCEEECcCC-CCCCCc-c--cCCCCCCCEEECCCC-cCcccCC-------------CcccccEEECcCC-cCCcC--c
Confidence 57777887777 555543 2 677788888888775 3444432 2457777777765 34444 2
Q ss_pred CCccccCCCcceEeEecCCCcccc
Q 040122 158 TGNIIELPKLEYLIIENCPDMETF 181 (388)
Q Consensus 158 ~~~~~~l~~L~~L~l~~c~~l~~~ 181 (388)
.++.+++|++|++.+| .++.+
T Consensus 190 --~~~~l~~L~~L~l~~N-~l~~l 210 (454)
T 1jl5_A 190 --ELQNLPFLTAIYADNN-SLKKL 210 (454)
T ss_dssp --CCTTCTTCCEEECCSS-CCSSC
T ss_pred --cccCCCCCCEEECCCC-cCCcC
Confidence 2567777777777776 44443
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.72 E-value=1.9e-16 Score=143.91 Aligned_cols=228 Identities=18% Similarity=0.138 Sum_probs=157.2
Q ss_pred cCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccC
Q 040122 77 FNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCN 156 (388)
Q Consensus 77 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 156 (388)
.++|++|++++| .++.++ ...+.++++|++|++++|. +..+..... ....+++|++|+++++. +..+
T Consensus 27 ~~~l~~L~L~~n-~l~~i~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-------~~~~~~~L~~L~Ls~n~-i~~l-- 93 (306)
T 2z66_A 27 PSSATRLELESN-KLQSLP-HGVFDKLTQLTKLSLSSNG-LSFKGCCSQ-------SDFGTTSLKYLDLSFNG-VITM-- 93 (306)
T ss_dssp CTTCCEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSSC-CCEEEEEEH-------HHHSCSCCCEEECCSCS-EEEE--
T ss_pred CCCCCEEECCCC-ccCccC-HhHhhccccCCEEECCCCc-cCcccCccc-------ccccccccCEEECCCCc-cccC--
Confidence 579999999998 677644 4447899999999999963 433311000 02348999999999874 4454
Q ss_pred CCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEec-cc-ccccccccCCCCcceEEecCC
Q 040122 157 FTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVAN-QI-QHLFDEKVAFPQLGNLRLSGL 234 (388)
Q Consensus 157 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~-~~-~~~~~~~~~~~~L~~L~l~~~ 234 (388)
+.. +..+++|++|++.++ .++..+.... +..+++|+.|++++ .. ...+..+..+++|+.|+++++
T Consensus 94 ~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~-----------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 94 SSN-FLGLEQLEHLDFQHS-NLKQMSEFSV-----------FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 160 (306)
T ss_dssp EEE-EETCTTCCEEECTTS-EEESSTTTTT-----------TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC
T ss_pred hhh-cCCCCCCCEEECCCC-cccccccchh-----------hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC
Confidence 223 668999999999996 5666654222 77889999999987 22 233445667889999999886
Q ss_pred CCcce--ecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEccc
Q 040122 235 HKVQH--LWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADC 312 (388)
Q Consensus 235 ~~l~~--~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 312 (388)
. +.. .+... ..+++|++|++++|......+..+..+++|++|+++++ .+..++... ...+++|++|++++|
T Consensus 161 ~-l~~~~~~~~~----~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 161 S-FQENFLPDIF----TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQVLDYSLN 233 (306)
T ss_dssp E-EGGGEECSCC----TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGG-GTTCTTCCEEECTTS
T ss_pred c-cccccchhHH----hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhh-ccCcccCCEeECCCC
Confidence 3 432 33222 67788999999988655554667788889999999886 455554432 367888999999888
Q ss_pred cccchhhcccccccCCccccc-cccceEecccCC
Q 040122 313 KMIEQIIQLQVGEEAKDCNVF-KELEYLGLDCLP 345 (388)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~ 345 (388)
......+. ....+ ++|++|++++++
T Consensus 234 ~l~~~~~~--------~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 234 HIMTSKKQ--------ELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCCBCSSS--------SCCCCCTTCCEEECTTCC
T ss_pred CCcccCHH--------HHHhhhccCCEEEccCCC
Confidence 54333222 12334 478888888764
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.72 E-value=4.5e-16 Score=149.34 Aligned_cols=225 Identities=19% Similarity=0.147 Sum_probs=151.6
Q ss_pred cCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccC
Q 040122 77 FNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCN 156 (388)
Q Consensus 77 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 156 (388)
.+++++|++++| +++.+.+.. +.++++|++|++++| .+..++... +..+++|++|+++++. +..+
T Consensus 74 ~~~l~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~Ls~n-~i~~~~~~~---------~~~l~~L~~L~L~~n~-l~~~-- 138 (452)
T 3zyi_A 74 PSNTRYLNLMEN-NIQMIQADT-FRHLHHLEVLQLGRN-SIRQIEVGA---------FNGLASLNTLELFDNW-LTVI-- 138 (452)
T ss_dssp CTTCSEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCCEECTTT---------TTTCTTCCEEECCSSC-CSBC--
T ss_pred CCCccEEECcCC-cCceECHHH-cCCCCCCCEEECCCC-ccCCcChhh---------ccCcccCCEEECCCCc-CCcc--
Confidence 578889999888 666655444 788899999999885 455543211 4568889999998763 5555
Q ss_pred CCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEec--ccccccc-cccCCCCcceEEecC
Q 040122 157 FTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVAN--QIQHLFD-EKVAFPQLGNLRLSG 233 (388)
Q Consensus 157 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~--~~~~~~~-~~~~~~~L~~L~l~~ 233 (388)
+...+..+++|++|+++++ .++.++... +..+++|+.|++++ ....++. .+..+++|+.|++++
T Consensus 139 ~~~~~~~l~~L~~L~L~~N-~l~~~~~~~------------~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 205 (452)
T 3zyi_A 139 PSGAFEYLSKLRELWLRNN-PIESIPSYA------------FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205 (452)
T ss_dssp CTTTSSSCTTCCEEECCSC-CCCEECTTT------------TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT
T ss_pred ChhhhcccCCCCEEECCCC-CcceeCHhH------------HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC
Confidence 3333567888999999886 566666543 67788888888876 2333332 356678888888887
Q ss_pred CCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEcccc
Q 040122 234 LHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCK 313 (388)
Q Consensus 234 ~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 313 (388)
+ .++.++.. ..+++|++|++++|......+..+..+++|++|+++++ .+..+.... ...+++|+.|++++|.
T Consensus 206 n-~l~~~~~~-----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 206 C-NIKDMPNL-----TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNA-FDGLASLVELNLAHNN 277 (452)
T ss_dssp S-CCSSCCCC-----TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSSC
T ss_pred C-cccccccc-----cccccccEEECcCCcCcccCcccccCccCCCEEEeCCC-cCceECHHH-hcCCCCCCEEECCCCc
Confidence 5 45555421 66778888888887655555666777888888888876 455543332 3567888888888774
Q ss_pred ccchhhcccccccCCccccccccceEecccCC
Q 040122 314 MIEQIIQLQVGEEAKDCNVFKELEYLGLDCLP 345 (388)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 345 (388)
+..++. . ....+++|+.|++.+++
T Consensus 278 -l~~~~~---~----~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 278 -LSSLPH---D----LFTPLRYLVELHLHHNP 301 (452)
T ss_dssp -CSCCCT---T----SSTTCTTCCEEECCSSC
T ss_pred -CCccCh---H----HhccccCCCEEEccCCC
Confidence 333322 0 11345778888887653
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=1.3e-17 Score=152.45 Aligned_cols=266 Identities=15% Similarity=0.159 Sum_probs=180.5
Q ss_pred cCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccc
Q 040122 47 IGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEEL 126 (388)
Q Consensus 47 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~ 126 (388)
..+++|++|+++++. +....... ...+++|++|++++| .+...++ +..+++|++|++++| .+..+
T Consensus 31 ~~~~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~Ls~n-~l~~~~~---~~~l~~L~~L~Ls~n-~l~~l------ 95 (317)
T 3o53_A 31 QSAWNVKELDLSGNP-LSQISAAD---LAPFTKLELLNLSSN-VLYETLD---LESLSTLRTLDLNNN-YVQEL------ 95 (317)
T ss_dssp TTGGGCSEEECTTSC-CCCCCHHH---HTTCTTCCEEECTTS-CCEEEEE---ETTCTTCCEEECCSS-EEEEE------
T ss_pred ccCCCCCEEECcCCc-cCcCCHHH---hhCCCcCCEEECCCC-cCCcchh---hhhcCCCCEEECcCC-ccccc------
Confidence 456789999999875 66443222 156899999999998 5666454 789999999999996 45554
Q ss_pred cccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCce
Q 040122 127 SAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEEN 206 (388)
Q Consensus 127 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~ 206 (388)
...++|++|+++++. +..+. ...+++|++|++.++ .++..+... +..+++|+.
T Consensus 96 --------~~~~~L~~L~l~~n~-l~~~~-----~~~~~~L~~L~l~~N-~l~~~~~~~------------~~~l~~L~~ 148 (317)
T 3o53_A 96 --------LVGPSIETLHAANNN-ISRVS-----CSRGQGKKNIYLANN-KITMLRDLD------------EGCRSRVQY 148 (317)
T ss_dssp --------EECTTCCEEECCSSC-CSEEE-----ECCCSSCEEEECCSS-CCCSGGGBC------------TGGGSSEEE
T ss_pred --------cCCCCcCEEECCCCc-cCCcC-----ccccCCCCEEECCCC-CCCCccchh------------hhccCCCCE
Confidence 235899999998864 45541 235788999999997 566655432 677899999
Q ss_pred EEEec-ccccc-cccc-cCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEee
Q 040122 207 LLVAN-QIQHL-FDEK-VAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKV 283 (388)
Q Consensus 207 L~l~~-~~~~~-~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l 283 (388)
|++++ ..... +..+ ..+++|+.|+++++ .++.++.. ..+++|++|++++|. +..++..+..+++|+.|++
T Consensus 149 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-----~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L 221 (317)
T 3o53_A 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ-----VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISL 221 (317)
T ss_dssp EECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC-----CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEEC
T ss_pred EECCCCCCCcccHHHHhhccCcCCEEECCCC-cCcccccc-----cccccCCEEECCCCc-CCcchhhhcccCcccEEEC
Confidence 99988 32222 2333 35789999999885 46666433 347889999999874 4556666888899999999
Q ss_pred ccCcCcccccchhhhcCccccceeeEcccccc-chhhcccccccCCccccccccceEecccCCCcceecCCCccccCCCc
Q 040122 284 SKCHELINVLTLSASKNLVNLGRMMIADCKMI-EQIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTSFCLGNYALEFPSL 362 (388)
Q Consensus 284 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 362 (388)
+++ .++.++.. ...+++|+.|++++|+.. ..++. ....++.|+.|++.+++.++........ .+.+
T Consensus 222 ~~N-~l~~l~~~--~~~l~~L~~L~l~~N~~~~~~~~~--------~~~~~~~L~~l~l~~~~~l~~~~~~~~~--~~~~ 288 (317)
T 3o53_A 222 RNN-KLVLIEKA--LRFSQNLEHFDLRGNGFHCGTLRD--------FFSKNQRVQTVAKQTVKKLTGQNEEECT--VPTL 288 (317)
T ss_dssp TTS-CCCEECTT--CCCCTTCCEEECTTCCCBHHHHHH--------HHHTCHHHHHHHHHHHHHHHSSSSCCCS--STTC
T ss_pred cCC-cccchhhH--hhcCCCCCEEEccCCCccCcCHHH--------HHhccccceEEECCCchhccCCchhccC--CCce
Confidence 986 56665432 367889999999988654 22222 1234577888888766655544333311 2343
Q ss_pred ceEEeccCCCcc
Q 040122 363 KQVVVRQCPKMK 374 (388)
Q Consensus 363 ~~L~l~~c~~l~ 374 (388)
....-.+|..+.
T Consensus 289 ~~~~~~cc~~l~ 300 (317)
T 3o53_A 289 GHYGAYCCEDLP 300 (317)
T ss_dssp EEETTEEEBCCT
T ss_pred ecccceeeccCC
Confidence 343344565543
No 56
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.72 E-value=2.9e-16 Score=150.48 Aligned_cols=75 Identities=20% Similarity=0.136 Sum_probs=39.1
Q ss_pred CCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceeccccccccc
Q 040122 50 LDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAK 129 (388)
Q Consensus 50 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~ 129 (388)
++|++|+++++. +..++ .. ..+++|++|++++| .++.++. ..++|++|++++| .+..++.
T Consensus 131 ~~L~~L~L~~n~-l~~lp-~~----~~l~~L~~L~l~~N-~l~~lp~-----~~~~L~~L~L~~n-~l~~l~~------- 190 (454)
T 1jl5_A 131 PLLEYLGVSNNQ-LEKLP-EL----QNSSFLKIIDVDNN-SLKKLPD-----LPPSLEFIAAGNN-QLEELPE------- 190 (454)
T ss_dssp TTCCEEECCSSC-CSSCC-CC----TTCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSSCCC-------
T ss_pred CCCCEEECcCCC-CCCCc-cc----CCCCCCCEEECCCC-cCcccCC-----CcccccEEECcCC-cCCcCcc-------
Confidence 467777776654 44333 12 45666666666666 4444222 1246666666664 3333332
Q ss_pred ccccCCcCccccEeecccC
Q 040122 130 EEHIGPLFPRLLSLKLIDL 148 (388)
Q Consensus 130 ~~~~~~~~~~L~~L~l~~~ 148 (388)
+..+++|++|+++++
T Consensus 191 ----~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 191 ----LQNLPFLTAIYADNN 205 (454)
T ss_dssp ----CTTCTTCCEEECCSS
T ss_pred ----ccCCCCCCEEECCCC
Confidence 234555555555554
No 57
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.72 E-value=4.1e-16 Score=155.70 Aligned_cols=124 Identities=23% Similarity=0.150 Sum_probs=62.3
Q ss_pred hhhccccEEEEecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEccccccchhhcccccccCC
Q 040122 249 KAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAK 328 (388)
Q Consensus 249 ~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 328 (388)
..+++++.++++.+......+..+..+++|+.|+++++......... ....+++|++|++++|. ++.++. .
T Consensus 442 ~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~-~~~~l~~L~~L~Ls~N~-L~~l~~-------~ 512 (635)
T 4g8a_A 442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQ-LEQLSP-------T 512 (635)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSC-CCEECT-------T
T ss_pred ccccccccccccccccccccccccccchhhhhhhhhhcccccccCch-hhhhccccCEEECCCCc-cCCcCh-------H
Confidence 33445555555554443333444555666666666665433332221 22456667777776663 232211 0
Q ss_pred ccccccccceEecccCCCcceecCCCccccCCCcceEEeccCCCcccccCCCCCC
Q 040122 329 DCNVFKELEYLGLDCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGLLDT 383 (388)
Q Consensus 329 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~ 383 (388)
....+++|++|+++++ +++.++.... ..+++|++|+++++.-.+..|..+.++
T Consensus 513 ~f~~l~~L~~L~Ls~N-~l~~l~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l~~l 565 (635)
T 4g8a_A 513 AFNSLSSLQVLNMSHN-NFFSLDTFPY-KCLNSLQVLDYSLNHIMTSKKQELQHF 565 (635)
T ss_dssp TTTTCTTCCEEECTTS-CCCBCCCGGG-TTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred HHcCCCCCCEEECCCC-cCCCCChhHH-hCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence 1234566677777664 3544443221 125667777776655444444455444
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.71 E-value=4.3e-17 Score=151.32 Aligned_cols=265 Identities=14% Similarity=0.104 Sum_probs=182.4
Q ss_pred hhHHHHhhhccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccc
Q 040122 37 STIQKCYDEKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDS 116 (388)
Q Consensus 37 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 116 (388)
..+..+|..+. ++|++|+++++. +..++... ...+++|++|++++| .++..++.. +.++++|++|++++| .
T Consensus 41 ~~l~~iP~~~~--~~L~~L~l~~n~-i~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~ 111 (353)
T 2z80_A 41 GSLNSIPSGLT--EAVKSLDLSNNR-ITYISNSD---LQRCVNLQALVLTSN-GINTIEEDS-FSSLGSLEHLDLSYN-Y 111 (353)
T ss_dssp TTCSSCCTTCC--TTCCEEECTTSC-CCEECTTT---TTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-C
T ss_pred CCccccccccc--ccCcEEECCCCc-CcccCHHH---hccCCCCCEEECCCC-ccCccCHhh-cCCCCCCCEEECCCC-c
Confidence 34455666543 689999999876 76555422 256899999999998 677755543 889999999999996 4
Q ss_pred cceecccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCC
Q 040122 117 LEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNK 196 (388)
Q Consensus 117 l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~ 196 (388)
+..++... +..+++|++|+++++ .++.+... ..+..+++|++|++.+|..+...+...
T Consensus 112 l~~~~~~~---------~~~l~~L~~L~L~~n-~l~~l~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~----------- 169 (353)
T 2z80_A 112 LSNLSSSW---------FKPLSSLTFLNLLGN-PYKTLGET-SLFSHLTKLQILRVGNMDTFTKIQRKD----------- 169 (353)
T ss_dssp CSSCCHHH---------HTTCTTCSEEECTTC-CCSSSCSS-CSCTTCTTCCEEEEEESSSCCEECTTT-----------
T ss_pred CCcCCHhH---------hCCCccCCEEECCCC-CCcccCch-hhhccCCCCcEEECCCCccccccCHHH-----------
Confidence 45543311 356899999999987 35555221 236789999999999987677776543
Q ss_pred ccccccCCceEEEec-cc-ccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCC---
Q 040122 197 EPQKLKSEENLLVAN-QI-QHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPP--- 271 (388)
Q Consensus 197 ~l~~l~~L~~L~l~~-~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~--- 271 (388)
++.+++|+.|++++ .. ...+..++.+++|++|+++++. ++.++.. ....+++|++|++++|......+..
T Consensus 170 -~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~---~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 244 (353)
T 2z80_A 170 -FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEI---FVDVTSSVECLELRDTDLDTFHFSELST 244 (353)
T ss_dssp -TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHH---HHHHTTTEEEEEEESCBCTTCCCC----
T ss_pred -ccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhh---hhhhcccccEEECCCCcccccccccccc
Confidence 78899999999998 33 3346677889999999999854 5554422 1256789999999998644322221
Q ss_pred ccccCCCCEEeeccCcCcccccc---hhhhcCccccceeeEccccccchhhcccccccCCccccccccceEecccCCC
Q 040122 272 SWHLENLEALKVSKCHELINVLT---LSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPS 346 (388)
Q Consensus 272 ~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 346 (388)
......++.+++.++ .+.+... ......+++|++|++++|. ++.++. ++ ...+++|++|++++++-
T Consensus 245 ~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~---~~----~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 245 GETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPD---GI----FDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp --CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCT---TT----TTTCTTCCEEECCSSCB
T ss_pred ccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCCC-CCccCH---HH----HhcCCCCCEEEeeCCCc
Confidence 234567888888775 3333211 1234678899999999884 444443 11 14568999999998753
No 59
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.71 E-value=3.6e-18 Score=169.56 Aligned_cols=90 Identities=13% Similarity=0.077 Sum_probs=47.5
Q ss_pred cccCCCCEEeeccCcCcccccchhhhcCccccceeeEccccccchhhcccccccCCccccccccceEecccCCCcceecC
Q 040122 273 WHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTSFCL 352 (388)
Q Consensus 273 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 352 (388)
..+++|+.|++++ .+.+.....+...+++|++|++++|........ . -...+++|++|++++|+. +....
T Consensus 429 ~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~------~-l~~~~~~L~~L~L~~n~~-~~~~~ 498 (594)
T 2p1m_B 429 EHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH------H-VLSGCDSLRKLEIRDCPF-GDKAL 498 (594)
T ss_dssp HHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH------H-HHHHCTTCCEEEEESCSC-CHHHH
T ss_pred hhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHH------H-HHhcCCCcCEEECcCCCC-cHHHH
Confidence 3455666666644 333333233333456677777766642111110 0 013368888888888864 32211
Q ss_pred CCccccCCCcceEEeccCCC
Q 040122 353 GNYALEFPSLKQVVVRQCPK 372 (388)
Q Consensus 353 ~~~~~~~~~L~~L~l~~c~~ 372 (388)
......+++|++|++++|+.
T Consensus 499 ~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 499 LANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHhCCCCCEEeeeCCCC
Confidence 11112368888888888875
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=1.1e-15 Score=151.34 Aligned_cols=247 Identities=18% Similarity=0.133 Sum_probs=187.0
Q ss_pred CCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceeccccccccc
Q 040122 50 LDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAK 129 (388)
Q Consensus 50 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~ 129 (388)
.+++.|+++++. +..++... .++|++|++++| .++.+++ .+++|++|++++|. +..+|.
T Consensus 40 ~~l~~L~ls~n~-L~~lp~~l------~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~Ls~N~-l~~lp~------- 98 (622)
T 3g06_A 40 NGNAVLNVGESG-LTTLPDCL------PAHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGNQ-LTSLPV------- 98 (622)
T ss_dssp HCCCEEECCSSC-CSCCCSCC------CTTCSEEEECSC-CCSCCCC-----CCTTCCEEEECSCC-CSCCCC-------
T ss_pred CCCcEEEecCCC-cCccChhh------CCCCcEEEecCC-CCCCCCC-----cCCCCCEEEcCCCc-CCcCCC-------
Confidence 569999999776 66555433 489999999999 6776443 57899999999964 666543
Q ss_pred ccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEE
Q 040122 130 EEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLV 209 (388)
Q Consensus 130 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l 209 (388)
.+++|++|+++++ .+..+ +. .+++|+.|++.++ .++.++.. +++|+.|++
T Consensus 99 ------~l~~L~~L~Ls~N-~l~~l--~~----~l~~L~~L~L~~N-~l~~lp~~----------------l~~L~~L~L 148 (622)
T 3g06_A 99 ------LPPGLLELSIFSN-PLTHL--PA----LPSGLCKLWIFGN-QLTSLPVL----------------PPGLQELSV 148 (622)
T ss_dssp ------CCTTCCEEEECSC-CCCCC--CC----CCTTCCEEECCSS-CCSCCCCC----------------CTTCCEEEC
T ss_pred ------CCCCCCEEECcCC-cCCCC--CC----CCCCcCEEECCCC-CCCcCCCC----------------CCCCCEEEC
Confidence 4899999999886 45665 11 5789999999997 57766542 589999999
Q ss_pred ec-ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccCcC
Q 040122 210 AN-QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKCHE 288 (388)
Q Consensus 210 ~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 288 (388)
++ ....++. .+++|+.|+++++ .++.++ ..+++|+.|++++|. +..++. .+++|+.|+++++ .
T Consensus 149 s~N~l~~l~~---~~~~L~~L~L~~N-~l~~l~-------~~~~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N-~ 212 (622)
T 3g06_A 149 SDNQLASLPA---LPSELCKLWAYNN-QLTSLP-------MLPSGLQELSVSDNQ-LASLPT---LPSELYKLWAYNN-R 212 (622)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSS-CCSCCC-------CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-C
T ss_pred cCCcCCCcCC---ccCCCCEEECCCC-CCCCCc-------ccCCCCcEEECCCCC-CCCCCC---ccchhhEEECcCC-c
Confidence 98 3333333 3578999999985 577766 446899999999975 445554 3579999999986 5
Q ss_pred cccccchhhhcCccccceeeEccccccchhhcccccccCCccccccccceEecccCCCcceecCCCccccCCCcceEEec
Q 040122 289 LINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTSFCLGNYALEFPSLKQVVVR 368 (388)
Q Consensus 289 l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~ 368 (388)
++.++ ..+++|+.|++++|. ++.++ ..+++|+.|+++++ .++.++. .+++|+.|+++
T Consensus 213 l~~l~-----~~~~~L~~L~Ls~N~-L~~lp-----------~~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls 269 (622)
T 3g06_A 213 LTSLP-----ALPSGLKELIVSGNR-LTSLP-----------VLPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVY 269 (622)
T ss_dssp CSSCC-----CCCTTCCEEECCSSC-CSCCC-----------CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECC
T ss_pred ccccC-----CCCCCCCEEEccCCc-cCcCC-----------CCCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCC
Confidence 65543 235889999999884 44443 24589999999997 6777766 26899999999
Q ss_pred cCCCcccccCCCCCCCCCC
Q 040122 369 QCPKMKIFSQGLLDTPMLN 387 (388)
Q Consensus 369 ~c~~l~~lp~~~~~~~~L~ 387 (388)
+| +++.+|..+.++++|+
T Consensus 270 ~N-~L~~lp~~l~~l~~L~ 287 (622)
T 3g06_A 270 RN-QLTRLPESLIHLSSET 287 (622)
T ss_dssp SS-CCCSCCGGGGGSCTTC
T ss_pred CC-CCCcCCHHHhhccccC
Confidence 97 5779999898888886
No 61
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.70 E-value=2.1e-18 Score=171.21 Aligned_cols=158 Identities=19% Similarity=0.261 Sum_probs=94.1
Q ss_pred cCCCCccceeeecccCccee-----eecCCCCchhHHHHhhhccCCCCcceEEecCccccceeccccccCccccCCccEE
Q 040122 9 LSIPKPCKVQVTEKEEGELH-----HWEGNNLNSTIQKCYDEKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAEL 83 (388)
Q Consensus 9 ~~~~~l~~l~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L 83 (388)
..|++|+++.+........+ .|.+ .....+..+. ..+++|++|+++++. +....... +. ..+++|++|
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~-~~~~~l~~l~---~~~~~L~~L~L~~~~-~~~~~~~~-l~-~~~~~L~~L 135 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGG-YVYPWIEAMS---SSYTWLEEIRLKRMV-VTDDCLEL-IA-KSFKNFKVL 135 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCC-BCHHHHHHHH---HHCTTCCEEEEESCB-CCHHHHHH-HH-HHCTTCCEE
T ss_pred hhCCCceEEeccCCCchhhcccccccccc-hhhHHHHHHH---HhCCCCCeEEeeCcE-EcHHHHHH-HH-HhCCCCcEE
Confidence 35789999998875544333 2434 3333444443 346889999999886 55322222 11 258999999
Q ss_pred EecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCc-ccccccCCCCccc
Q 040122 84 VVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLP-KLKRFCNFTGNII 162 (388)
Q Consensus 84 ~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~ 162 (388)
++.+|..++.........++++|++|++++|. +..... ..+ ......+++|+.|+++++. .+..-. ......
T Consensus 136 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~-~~l----~~~~~~~~~L~~L~l~~~~~~~~~~~-l~~l~~ 208 (594)
T 2p1m_B 136 VLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSG-HWL----SHFPDTYTSLVSLNISCLASEVSFSA-LERLVT 208 (594)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCG-GGG----GGSCTTCCCCCEEECTTCCSCCCHHH-HHHHHH
T ss_pred eCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcch-HHH----HHHhhcCCcCcEEEecccCCcCCHHH-HHHHHH
Confidence 99999655542222335689999999999975 332110 000 0113467899999998775 111110 001023
Q ss_pred cCCCcceEeEecCCCccc
Q 040122 163 ELPKLEYLIIENCPDMET 180 (388)
Q Consensus 163 ~l~~L~~L~l~~c~~l~~ 180 (388)
.+++|++|++.+|..+..
T Consensus 209 ~~~~L~~L~L~~~~~~~~ 226 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEK 226 (594)
T ss_dssp HCTTCCEEECCTTSCHHH
T ss_pred hCCCCcEEecCCCCcHHH
Confidence 578889998888754443
No 62
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.69 E-value=1.6e-17 Score=164.86 Aligned_cols=86 Identities=12% Similarity=0.066 Sum_probs=49.2
Q ss_pred ccCcceeeecCCCC---ch-hHHHHhhhccCCCCcceEEecCccccceecccc-ccCccccCCccEEEecCCCCCcccCC
Q 040122 22 KEEGELHHWEGNNL---NS-TIQKCYDEKIGFLDINRLQLSHFPRLQEIWHGQ-ALPVRFFNNLAELVVDDSTNMSSAIP 96 (388)
Q Consensus 22 ~~~~~~~~~~~~~~---~~-~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~ 96 (388)
.+++++++..++.. .. .+..++ ..+++|++|+++++. +....... +.....+++|++|++.+| .+...+
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~---~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~- 236 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELA---QHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDF-EILELV- 236 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHH---HHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGH-
T ss_pred CCCCCEEECccccccCcchhHHHHHH---hcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHH-
Confidence 35556665555311 11 133443 346889999998665 32111000 001145789999999887 444433
Q ss_pred hhhhhcCCCCcEEEeccc
Q 040122 97 ANLLRCLNNLEWLAVRNC 114 (388)
Q Consensus 97 ~~~~~~l~~L~~L~l~~~ 114 (388)
..+.++++|++|++++.
T Consensus 237 -~~~~~~~~L~~L~l~~~ 253 (592)
T 3ogk_B 237 -GFFKAAANLEEFCGGSL 253 (592)
T ss_dssp -HHHHHCTTCCEEEECBC
T ss_pred -HHHhhhhHHHhhccccc
Confidence 33788888999988753
No 63
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.69 E-value=3.6e-18 Score=169.55 Aligned_cols=338 Identities=11% Similarity=0.053 Sum_probs=174.6
Q ss_pred CCCCccceeeecccCccee-----eecCCCCchhHHHHhhhccCCCCcceEEecCccccceeccccccCccccCC-ccEE
Q 040122 10 SIPKPCKVQVTEKEEGELH-----HWEGNNLNSTIQKCYDEKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNN-LAEL 83 (388)
Q Consensus 10 ~~~~l~~l~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~-L~~L 83 (388)
.+++|+++.++.......+ .|.+ .....+..+. ..+++|++|+++++. +....... +. ..+++ |++|
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~-~~~~~l~~l~---~~~~~L~~L~L~~~~-i~~~~~~~-l~-~~~~~~L~~L 143 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGG-YVTPWVTEIS---NNLRQLKSVHFRRMI-VSDLDLDR-LA-KARADDLETL 143 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCC-BCHHHHHHHH---HHCTTCCEEEEESCB-CCHHHHHH-HH-HHHGGGCCEE
T ss_pred hCCCCeEEEecCCcchhhcccccccccc-cchHHHHHHH---hhCCCCCeEEeeccE-ecHHHHHH-HH-HhccccCcEE
Confidence 5788999998765443322 3333 2223333332 357889999999874 54221111 10 12444 9999
Q ss_pred EecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCccccccc--CCCCcc
Q 040122 84 VVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFC--NFTGNI 161 (388)
Q Consensus 84 ~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~ 161 (388)
++.+|.............++++|++|++++|.. ..... .++ ......+++|++|+++++.. ..+. ......
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~~~~-~~l----~~~~~~~~~L~~L~L~~n~~-~~~~~~~l~~~~ 216 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSF-SEKDG-KWL----HELAQHNTSLEVLNFYMTEF-AKISPKDLETIA 216 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEE-ECCCS-HHH----HHHHHHCCCCCEEECTTCCC-SSCCHHHHHHHH
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccc-cCcch-hHH----HHHHhcCCCccEEEeeccCC-CccCHHHHHHHH
Confidence 998886433211112345788999999988742 11100 000 00024577788887765532 2110 000113
Q ss_pred ccCCCcceEeEecCCCcccccCCcceeeeccc--------------CCCccccccCCceEEEec-ccccccccccCCCCc
Q 040122 162 IELPKLEYLIIENCPDMETFTSNSTFVLHMTA--------------DNKEPQKLKSEENLLVAN-QIQHLFDEKVAFPQL 226 (388)
Q Consensus 162 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~--------------~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~L 226 (388)
..+++|++|++.+| .+..++.......+|++ ....+..+++|+.++++. ....++.....+++|
T Consensus 217 ~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L 295 (592)
T 3ogk_B 217 RNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQI 295 (592)
T ss_dssp HHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGC
T ss_pred hhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCC
Confidence 46777777777776 33333211000000000 001245556666666655 233344445556677
Q ss_pred ceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeecc----------CcCcccccchh
Q 040122 227 GNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSK----------CHELINVLTLS 296 (388)
Q Consensus 227 ~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~----------c~~l~~~~~~~ 296 (388)
++|++++|. ++..... .....+++|++|++.++..-..++.....+++|++|++++ |..+++.....
T Consensus 296 ~~L~Ls~~~-l~~~~~~--~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~ 372 (592)
T 3ogk_B 296 RKLDLLYAL-LETEDHC--TLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA 372 (592)
T ss_dssp CEEEETTCC-CCHHHHH--HHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH
T ss_pred cEEecCCCc-CCHHHHH--HHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH
Confidence 777777765 3321110 1125567777777774322222232334567788888874 66666554444
Q ss_pred hhcCccccceeeEccccccchhhcccccccCCccccccccceEeccc---CCCcceecCCC----ccccCCCcceEEecc
Q 040122 297 ASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDC---LPSLTSFCLGN----YALEFPSLKQVVVRQ 369 (388)
Q Consensus 297 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~---~~~l~~~~~~~----~~~~~~~L~~L~l~~ 369 (388)
+...+++|++|++. |..+..... ..+ ...+++|++|++.+ ++.++..+... ....+++|++|+++.
T Consensus 373 l~~~~~~L~~L~l~-~~~l~~~~~-----~~l-~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~ 445 (592)
T 3ogk_B 373 LAQGCQELEYMAVY-VSDITNESL-----ESI-GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL 445 (592)
T ss_dssp HHHHCTTCSEEEEE-ESCCCHHHH-----HHH-HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC
T ss_pred HHhhCccCeEEEee-cCCccHHHH-----HHH-HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEec
Confidence 44567888888883 333332211 000 02367888888874 45565543210 012378999999987
Q ss_pred CCC
Q 040122 370 CPK 372 (388)
Q Consensus 370 c~~ 372 (388)
|..
T Consensus 446 ~~~ 448 (592)
T 3ogk_B 446 RQG 448 (592)
T ss_dssp CGG
T ss_pred CCC
Confidence 763
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=7.5e-17 Score=147.42 Aligned_cols=245 Identities=16% Similarity=0.110 Sum_probs=173.5
Q ss_pred cccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccc
Q 040122 75 RFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRF 154 (388)
Q Consensus 75 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 154 (388)
..+++|++|++++| .++..++.. +.++++|++|++++|. +..+++ +..+++|++|+++++. ++.+
T Consensus 31 ~~~~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~-----------~~~l~~L~~L~Ls~n~-l~~l 95 (317)
T 3o53_A 31 QSAWNVKELDLSGN-PLSQISAAD-LAPFTKLELLNLSSNV-LYETLD-----------LESLSTLRTLDLNNNY-VQEL 95 (317)
T ss_dssp TTGGGCSEEECTTS-CCCCCCHHH-HTTCTTCCEEECTTSC-CEEEEE-----------ETTCTTCCEEECCSSE-EEEE
T ss_pred ccCCCCCEEECcCC-ccCcCCHHH-hhCCCcCCEEECCCCc-CCcchh-----------hhhcCCCCEEECcCCc-cccc
Confidence 34689999999998 677755443 8999999999999964 444433 2668999999999874 4554
Q ss_pred cCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEec-ccccc-cccccCCCCcceEEec
Q 040122 155 CNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVAN-QIQHL-FDEKVAFPQLGNLRLS 232 (388)
Q Consensus 155 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~-~~~~~-~~~~~~~~~L~~L~l~ 232 (388)
...++|++|++.++ .++..+. ..+++|+.|++++ ....+ +..++.+++|+.|+++
T Consensus 96 -------~~~~~L~~L~l~~n-~l~~~~~---------------~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (317)
T 3o53_A 96 -------LVGPSIETLHAANN-NISRVSC---------------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (317)
T ss_dssp -------EECTTCCEEECCSS-CCSEEEE---------------CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT
T ss_pred -------cCCCCcCEEECCCC-ccCCcCc---------------cccCCCCEEECCCCCCCCccchhhhccCCCCEEECC
Confidence 24589999999997 5666653 3478899999998 33333 3456678999999999
Q ss_pred CCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEccc
Q 040122 233 GLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADC 312 (388)
Q Consensus 233 ~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 312 (388)
++ .++.+....+. ..+++|++|++++|. +..++. ...+++|++|+++++ .++.++.. ...+++|++|++++|
T Consensus 153 ~N-~l~~~~~~~~~--~~l~~L~~L~L~~N~-l~~~~~-~~~l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 153 LN-EIDTVNFAELA--ASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN 224 (317)
T ss_dssp TS-CCCEEEGGGGG--GGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTS
T ss_pred CC-CCCcccHHHHh--hccCcCCEEECCCCc-Cccccc-ccccccCCEEECCCC-cCCcchhh--hcccCcccEEECcCC
Confidence 85 56665433221 467899999999985 444443 345889999999986 56666443 367899999999988
Q ss_pred cccchhhcccccccCCccccccccceEecccCCCc-ceecCCCccccCCCcceEEeccCCCcccc
Q 040122 313 KMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSL-TSFCLGNYALEFPSLKQVVVRQCPKMKIF 376 (388)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~~~L~~L~l~~c~~l~~l 376 (388)
. ++.++. ....+++|+.|++++++.. ..++.... .+++|+.+++.+++.++..
T Consensus 225 ~-l~~l~~--------~~~~l~~L~~L~l~~N~~~~~~~~~~~~--~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 225 K-LVLIEK--------ALRFSQNLEHFDLRGNGFHCGTLRDFFS--KNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp C-CCEECT--------TCCCCTTCCEEECTTCCCBHHHHHHHHH--TCHHHHHHHHHHHHHHHSS
T ss_pred c-ccchhh--------HhhcCCCCCEEEccCCCccCcCHHHHHh--ccccceEEECCCchhccCC
Confidence 4 444433 2245689999999987643 23333222 3688888888876655543
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.67 E-value=1.7e-15 Score=136.13 Aligned_cols=211 Identities=18% Similarity=0.139 Sum_probs=155.9
Q ss_pred HHHhhhccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccce
Q 040122 40 QKCYDEKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEE 119 (388)
Q Consensus 40 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 119 (388)
..+|..+ .++|++|+++++. +..++... ...+++|++|++++| .++.+.+.. +.++++|++|++++|..+..
T Consensus 24 ~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~---~~~~~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~~l~~ 95 (285)
T 1ozn_A 24 QAVPVGI--PAASQRIFLHGNR-ISHVPAAS---FRACRNLTILWLHSN-VLARIDAAA-FTGLALLEQLDLSDNAQLRS 95 (285)
T ss_dssp SSCCTTC--CTTCSEEECTTSC-CCEECTTT---TTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSCTTCCC
T ss_pred ccCCcCC--CCCceEEEeeCCc-CCccCHHH---cccCCCCCEEECCCC-ccceeCHhh-cCCccCCCEEeCCCCCCccc
Confidence 3444443 4789999999876 66554332 256899999999998 677754444 88999999999999865666
Q ss_pred ecccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccc
Q 040122 120 VLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQ 199 (388)
Q Consensus 120 i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~ 199 (388)
++... +..+++|++|+++++. +..+ +...+..+++|++|++.++ .++.++... ++
T Consensus 96 ~~~~~---------~~~l~~L~~L~l~~n~-l~~~--~~~~~~~l~~L~~L~l~~n-~l~~~~~~~------------~~ 150 (285)
T 1ozn_A 96 VDPAT---------FHGLGRLHTLHLDRCG-LQEL--GPGLFRGLAALQYLYLQDN-ALQALPDDT------------FR 150 (285)
T ss_dssp CCTTT---------TTTCTTCCEEECTTSC-CCCC--CTTTTTTCTTCCEEECCSS-CCCCCCTTT------------TT
T ss_pred cCHHH---------hcCCcCCCEEECCCCc-CCEE--CHhHhhCCcCCCEEECCCC-cccccCHhH------------hc
Confidence 53221 4668999999999874 4444 2233668999999999997 566666543 67
Q ss_pred cccCCceEEEec-ccccccc-cccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCC
Q 040122 200 KLKSEENLLVAN-QIQHLFD-EKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLEN 277 (388)
Q Consensus 200 ~l~~L~~L~l~~-~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~ 277 (388)
.+++|+.|++++ ....++. .+..+++|+.|+++++ .++.+....+ ..+++|+.|++++|......+..+..+++
T Consensus 151 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 226 (285)
T 1ozn_A 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAF---RDLGRLMTLYLFANNLSALPTEALAPLRA 226 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTT---TTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred cCCCccEEECCCCcccccCHHHhcCccccCEEECCCC-cccccCHhHc---cCcccccEeeCCCCcCCcCCHHHcccCcc
Confidence 899999999998 4444444 4678899999999996 4666644333 67899999999998544433334778899
Q ss_pred CCEEeeccCc
Q 040122 278 LEALKVSKCH 287 (388)
Q Consensus 278 L~~L~l~~c~ 287 (388)
|++|++++++
T Consensus 227 L~~L~l~~N~ 236 (285)
T 1ozn_A 227 LQYLRLNDNP 236 (285)
T ss_dssp CCEEECCSSC
T ss_pred cCEEeccCCC
Confidence 9999999875
No 66
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=3.3e-15 Score=130.67 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=15.2
Q ss_pred cccceEecccCCCcceecCCCccccCCCcceEEeccCC
Q 040122 334 KELEYLGLDCLPSLTSFCLGNYALEFPSLKQVVVRQCP 371 (388)
Q Consensus 334 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 371 (388)
++|+.|+++++ .++.++... +++|+.|++.+++
T Consensus 205 ~~L~~L~l~~N-~l~~l~~~~----~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 205 SGPSLLDVSQT-SVTALPSKG----LEHLKELIARNTW 237 (239)
T ss_dssp BCCSEEECTTC-CCCCCCCTT----CTTCSEEECTTC-
T ss_pred cCCcEEECCCC-ccccCChhH----hccCceeeccCcc
Confidence 44455555442 344444332 4555555555554
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=7e-16 Score=149.20 Aligned_cols=131 Identities=11% Similarity=0.017 Sum_probs=85.4
Q ss_pred cccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccCcCcccccchhhh
Q 040122 219 EKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSAS 298 (388)
Q Consensus 219 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 298 (388)
.++.+++|+.|+++++ .++...+..+. ..+++|++|++++|. +..++. ...+++|++|+++++ .++.++.. .
T Consensus 139 ~~~~l~~L~~L~Ls~N-~l~~~~~~~l~--~~l~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~--~ 210 (487)
T 3oja_A 139 DEGCRSRVQYLDLKLN-EIDTVNFAELA--ASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSN-KLAFMGPE--F 210 (487)
T ss_dssp CGGGGSSEEEEECTTS-CCCEEEGGGGG--GGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSS-CCCEECGG--G
T ss_pred hhcCCCCCCEEECCCC-CCCCcChHHHh--hhCCcccEEecCCCc-cccccc-cccCCCCCEEECCCC-CCCCCCHh--H
Confidence 4456788888888885 45554433221 467899999999986 444433 345889999999986 56666443 3
Q ss_pred cCccccceeeEccccccchhhcccccccCCccccccccceEecccCCCc-ceecCCCccccCCCcceEEec
Q 040122 299 KNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSL-TSFCLGNYALEFPSLKQVVVR 368 (388)
Q Consensus 299 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~~~L~~L~l~ 368 (388)
..+++|+.|++++|. +..++. ....+++|+.|++++++.. ..++.... .+++|+.+.+.
T Consensus 211 ~~l~~L~~L~Ls~N~-l~~lp~--------~l~~l~~L~~L~l~~N~l~c~~~~~~~~--~l~~L~~l~~~ 270 (487)
T 3oja_A 211 QSAAGVTWISLRNNK-LVLIEK--------ALRFSQNLEHFDLRGNGFHCGTLRDFFS--KNQRVQTVAKQ 270 (487)
T ss_dssp GGGTTCSEEECTTSC-CCEECT--------TCCCCTTCCEEECTTCCBCHHHHHHHHT--TCHHHHHHHHH
T ss_pred cCCCCccEEEecCCc-Ccccch--------hhccCCCCCEEEcCCCCCcCcchHHHHH--hCCCCcEEecc
Confidence 578899999999875 334433 2245688999999887643 22322222 25677776665
No 68
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.64 E-value=5.5e-15 Score=136.88 Aligned_cols=236 Identities=19% Similarity=0.166 Sum_probs=173.0
Q ss_pred hHHHHhhhccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEecccccc
Q 040122 38 TIQKCYDEKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSL 117 (388)
Q Consensus 38 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 117 (388)
.+.++|..+ ++++++|+++++. ++.++.+. + ..+++|++|++++|...+. ++...+.++++++++...+++.+
T Consensus 20 ~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~-f--~~l~~L~~L~Ls~N~i~~~-i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 20 KVTEIPSDL--PRNAIELRFVLTK-LRVIQKGA-F--SGFGDLEKIEISQNDVLEV-IEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp TCCSCCTTC--CTTCSEEEEESCC-CSEECTTS-S--TTCTTCCEEEEECCTTCCE-ECTTSBCSCTTCCEEEEEEETTC
T ss_pred CCCccCcCc--CCCCCEEEccCCc-CCCcCHHH-H--cCCCCCCEEECcCCCCCCc-cChhHhhcchhhhhhhcccCCcc
Confidence 344566655 4789999999875 87766544 2 4689999999999954444 44444788999888777776778
Q ss_pred ceecccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCc
Q 040122 118 EEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKE 197 (388)
Q Consensus 118 ~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~ 197 (388)
..+++.. +..+++|++|+++++. +..+ +........++..+++.++..+..++....
T Consensus 93 ~~l~~~~---------f~~l~~L~~L~l~~n~-l~~~--~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f----------- 149 (350)
T 4ay9_X 93 LYINPEA---------FQNLPNLQYLLISNTG-IKHL--PDVHKIHSLQKVLLDIQDNINIHTIERNSF----------- 149 (350)
T ss_dssp CEECTTS---------BCCCTTCCEEEEEEEC-CSSC--CCCTTCCBSSCEEEEEESCTTCCEECTTSS-----------
T ss_pred cccCchh---------hhhccccccccccccc-cccC--Cchhhcccchhhhhhhccccccccccccch-----------
Confidence 8775431 4668999999998763 4554 222234556778899988888888776542
Q ss_pred cccccCCceEEEec-ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccC
Q 040122 198 PQKLKSEENLLVAN-QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLE 276 (388)
Q Consensus 198 l~~l~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~ 276 (388)
......++.|++++ ....++......++|+++.+.+++.++.++...+ ..+++|++|+++++ .++.+|.. .+.
T Consensus 150 ~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f---~~l~~L~~LdLs~N-~l~~lp~~--~~~ 223 (350)
T 4ay9_X 150 VGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVF---HGASGPVILDISRT-RIHSLPSY--GLE 223 (350)
T ss_dssp TTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTT---TTEECCSEEECTTS-CCCCCCSS--SCT
T ss_pred hhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHh---ccCcccchhhcCCC-CcCccChh--hhc
Confidence 23344688899888 5666766666778899999998888998887654 67899999999997 46777653 467
Q ss_pred CCCEEeeccCcCcccccchhhhcCccccceeeEccc
Q 040122 277 NLEALKVSKCHELINVLTLSASKNLVNLGRMMIADC 312 (388)
Q Consensus 277 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 312 (388)
+|+.|.+.++..++.++. ..++++|+.+++.+.
T Consensus 224 ~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 224 NLKKLRARSTYNLKKLPT---LEKLVALMEASLTYP 256 (350)
T ss_dssp TCCEEECTTCTTCCCCCC---TTTCCSCCEEECSCH
T ss_pred cchHhhhccCCCcCcCCC---chhCcChhhCcCCCC
Confidence 899999888888888764 367889999988653
No 69
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=8.7e-17 Score=148.08 Aligned_cols=109 Identities=19% Similarity=0.257 Sum_probs=60.6
Q ss_pred ccccCCceEEEecc-c---ccccccccCCC-CcceEEecCCC-Ccce--ecccCchhHhhhccccEEEEecCCCc-cccc
Q 040122 199 QKLKSEENLLVANQ-I---QHLFDEKVAFP-QLGNLRLSGLH-KVQH--LWKENDESNKAFANLERLEISECSKL-QKLV 269 (388)
Q Consensus 199 ~~l~~L~~L~l~~~-~---~~~~~~~~~~~-~L~~L~l~~~~-~l~~--~~~~~~~~~~~~~~L~~L~i~~~~~~-~~~~ 269 (388)
..+++|+.|+++++ . ..++..+..++ +|++|++++|. .+++ ++. ....+++|++|++++|..+ ...+
T Consensus 165 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~----~~~~~~~L~~L~l~~~~~l~~~~~ 240 (336)
T 2ast_B 165 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST----LVRRCPNLVHLDLSDSVMLKNDCF 240 (336)
T ss_dssp HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH----HHHHCTTCSEEECTTCTTCCGGGG
T ss_pred hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH----HHhhCCCCCEEeCCCCCcCCHHHH
Confidence 34455555555441 1 11233344566 77777777664 2321 111 1255677777777777633 3444
Q ss_pred CCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEccc
Q 040122 270 PPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADC 312 (388)
Q Consensus 270 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 312 (388)
..+..+++|++|++++|..+.+.... ...++++|++|++++|
T Consensus 241 ~~l~~l~~L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 241 QEFFQLNYLQHLSLSRCYDIIPETLL-ELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGCTTCCEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTS
T ss_pred HHHhCCCCCCEeeCCCCCCCCHHHHH-HHhcCCCCCEEeccCc
Confidence 55667777888888777644433221 2245777888888776
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=4.9e-15 Score=143.27 Aligned_cols=222 Identities=17% Similarity=0.161 Sum_probs=161.8
Q ss_pred HhhhccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceec
Q 040122 42 CYDEKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVL 121 (388)
Q Consensus 42 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 121 (388)
+......+++|++|+++++. +...+... ...+++|++|++++| .++..++ +..+++|++|++++| .+..++
T Consensus 26 l~~l~~~~~~L~~L~Ls~n~-l~~~~~~~---~~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~l~~l~ 96 (487)
T 3oja_A 26 LASLRQSAWNVKELDLSGNP-LSQISAAD---LAPFTKLELLNLSSN-VLYETLD---LESLSTLRTLDLNNN-YVQELL 96 (487)
T ss_dssp HHTTSTTGGGCCEEECCSSC-CCCCCGGG---GTTCTTCCEEECTTS-CCEEEEE---CTTCTTCCEEECCSS-EEEEEE
T ss_pred HHHhcccCCCccEEEeeCCc-CCCCCHHH---HhCCCCCCEEEeeCC-CCCCCcc---cccCCCCCEEEecCC-cCCCCC
Confidence 33334455699999999876 66443322 257899999999998 5666555 789999999999996 455552
Q ss_pred ccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccc
Q 040122 122 HLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKL 201 (388)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l 201 (388)
..++|++|+++++. +..+. ...+++|++|++.+| .++..++.. ++.+
T Consensus 97 --------------~~~~L~~L~L~~N~-l~~~~-----~~~l~~L~~L~L~~N-~l~~~~~~~------------~~~l 143 (487)
T 3oja_A 97 --------------VGPSIETLHAANNN-ISRVS-----CSRGQGKKNIYLANN-KITMLRDLD------------EGCR 143 (487)
T ss_dssp --------------ECTTCCEEECCSSC-CCCEE-----ECCCSSCEEEECCSS-CCCSGGGBC------------GGGG
T ss_pred --------------CCCCcCEEECcCCc-CCCCC-----ccccCCCCEEECCCC-CCCCCCchh------------hcCC
Confidence 24899999998874 44441 225789999999997 566554432 6788
Q ss_pred cCCceEEEec-cc-cccccccc-CCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCC
Q 040122 202 KSEENLLVAN-QI-QHLFDEKV-AFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENL 278 (388)
Q Consensus 202 ~~L~~L~l~~-~~-~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L 278 (388)
++|+.|++++ .. ...+..+. .+++|+.|+++++ .++.++.. ..+++|+.|++++|. +..++..+..+++|
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~~-----~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L 216 (487)
T 3oja_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ-----VVFAKLKTLDLSSNK-LAFMGPEFQSAAGV 216 (487)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC-----CCCTTCCEEECCSSC-CCEECGGGGGGTTC
T ss_pred CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC-cccccccc-----ccCCCCCEEECCCCC-CCCCCHhHcCCCCc
Confidence 9999999988 22 23444444 6899999999985 46666433 457899999999975 55566678888999
Q ss_pred CEEeeccCcCcccccchhhhcCccccceeeEcccccc
Q 040122 279 EALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMI 315 (388)
Q Consensus 279 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~ 315 (388)
+.|+++++ .+..++.. ...+++|+.|++++|+..
T Consensus 217 ~~L~Ls~N-~l~~lp~~--l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 217 TWISLRNN-KLVLIEKA--LRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp SEEECTTS-CCCEECTT--CCCCTTCCEEECTTCCBC
T ss_pred cEEEecCC-cCcccchh--hccCCCCCEEEcCCCCCc
Confidence 99999986 56665432 367889999999988654
No 71
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=1.7e-14 Score=133.65 Aligned_cols=226 Identities=14% Similarity=0.099 Sum_probs=108.9
Q ss_pred cCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccC
Q 040122 77 FNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCN 156 (388)
Q Consensus 77 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 156 (388)
.+++++|++++| +++.+++ ..+.++++|++|++++|...+.++... +..+++++.+...++..+..+
T Consensus 29 ~~~l~~L~Ls~N-~i~~i~~-~~f~~l~~L~~L~Ls~N~i~~~i~~~~---------f~~L~~l~~~l~~~~N~l~~l-- 95 (350)
T 4ay9_X 29 PRNAIELRFVLT-KLRVIQK-GAFSGFGDLEKIEISQNDVLEVIEADV---------FSNLPKLHEIRIEKANNLLYI-- 95 (350)
T ss_dssp CTTCSEEEEESC-CCSEECT-TSSTTCTTCCEEEEECCTTCCEECTTS---------BCSCTTCCEEEEEEETTCCEE--
T ss_pred CCCCCEEEccCC-cCCCcCH-HHHcCCCCCCEEECcCCCCCCccChhH---------hhcchhhhhhhcccCCccccc--
Confidence 345666666665 4555333 225666666666666654444443211 233445554444444445544
Q ss_pred CCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEecccccccccccCCCCcceEEecCCCC
Q 040122 157 FTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVANQIQHLFDEKVAFPQLGNLRLSGLHK 236 (388)
Q Consensus 157 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 236 (388)
+...+..+++|++|++.++ .++.++... .. ...++..+++.++..
T Consensus 96 ~~~~f~~l~~L~~L~l~~n-~l~~~~~~~------------~~----------------------~~~~l~~l~l~~~~~ 140 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLLISNT-GIKHLPDVH------------KI----------------------HSLQKVLLDIQDNIN 140 (350)
T ss_dssp CTTSBCCCTTCCEEEEEEE-CCSSCCCCT------------TC----------------------CBSSCEEEEEESCTT
T ss_pred Cchhhhhcccccccccccc-ccccCCchh------------hc----------------------ccchhhhhhhccccc
Confidence 2222445566666666654 344333221 11 223344455544444
Q ss_pred cceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEccccccc
Q 040122 237 VQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIE 316 (388)
Q Consensus 237 l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~ 316 (388)
+..++...+. .....++.|+++++ .++.++.......+|+++++.++..++.++... ...+++|++|++++| .++
T Consensus 141 i~~l~~~~f~--~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~-f~~l~~L~~LdLs~N-~l~ 215 (350)
T 4ay9_X 141 IHTIERNSFV--GLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV-FHGASGPVILDISRT-RIH 215 (350)
T ss_dssp CCEECTTSST--TSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTT-TTTEECCSEEECTTS-CCC
T ss_pred cccccccchh--hcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHHH-hccCcccchhhcCCC-CcC
Confidence 5554443321 22234555555554 234444444444556666665555555554322 245566666666655 233
Q ss_pred hhhcccccccCCccccccccceEecccCCCcceecCCCccccCCCcceEEec
Q 040122 317 QIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTSFCLGNYALEFPSLKQVVVR 368 (388)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~ 368 (388)
.++. ..+..|+.|.+.++.+++.++. . ..+++|+.+++.
T Consensus 216 ~lp~----------~~~~~L~~L~~l~~~~l~~lP~-l--~~l~~L~~l~l~ 254 (350)
T 4ay9_X 216 SLPS----------YGLENLKKLRARSTYNLKKLPT-L--EKLVALMEASLT 254 (350)
T ss_dssp CCCS----------SSCTTCCEEECTTCTTCCCCCC-T--TTCCSCCEEECS
T ss_pred ccCh----------hhhccchHhhhccCCCcCcCCC-c--hhCcChhhCcCC
Confidence 3332 2345555666555555555553 1 125566665553
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=1e-14 Score=127.54 Aligned_cols=200 Identities=15% Similarity=0.125 Sum_probs=99.9
Q ss_pred CcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccc
Q 040122 51 DINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKE 130 (388)
Q Consensus 51 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 130 (388)
+|++|+++++. +..++... ...+++|++|++++|..++.+++.. +.++++|++|++++|+.+..++...
T Consensus 32 ~l~~L~l~~n~-l~~i~~~~---~~~l~~L~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~l~~~n~l~~i~~~~------ 100 (239)
T 2xwt_C 32 STQTLKLIETH-LRTIPSHA---FSNLPNISRIYVSIDVTLQQLESHS-FYNLSKVTHIEIRNTRNLTYIDPDA------ 100 (239)
T ss_dssp TCCEEEEESCC-CSEECTTT---TTTCTTCCEEEEECCSSCCEECTTT-EESCTTCCEEEEEEETTCCEECTTS------
T ss_pred cccEEEEeCCc-ceEECHHH---ccCCCCCcEEeCCCCCCcceeCHhH-cCCCcCCcEEECCCCCCeeEcCHHH------
Confidence 55555555543 44333221 1335555555555553344433322 4555555555555544444443211
Q ss_pred cccCCcCccccEeecccCcccccccCCCCccccCCCcc---eEeEecCCCcccccCCcceeeecccCCCccccccCCceE
Q 040122 131 EHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLE---YLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENL 207 (388)
Q Consensus 131 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~---~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L 207 (388)
+..+++|++|+++++. ++.++. +..+++|+ +|++++++.++.++..
T Consensus 101 ---f~~l~~L~~L~l~~n~-l~~lp~----~~~l~~L~~L~~L~l~~N~~l~~i~~~----------------------- 149 (239)
T 2xwt_C 101 ---LKELPLLKFLGIFNTG-LKMFPD----LTKVYSTDIFFILEITDNPYMTSIPVN----------------------- 149 (239)
T ss_dssp ---EECCTTCCEEEEEEEC-CCSCCC----CTTCCBCCSEEEEEEESCTTCCEECTT-----------------------
T ss_pred ---hCCCCCCCEEeCCCCC-Cccccc----cccccccccccEEECCCCcchhhcCcc-----------------------
Confidence 2335555555555442 333311 33444444 5555554344444332
Q ss_pred EEecccccccccccCCCCcc-eEEecCCCCcceecccCchhHhhhccccEEEEecCCCccccc-CCcccc-CCCCEEeec
Q 040122 208 LVANQIQHLFDEKVAFPQLG-NLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLV-PPSWHL-ENLEALKVS 284 (388)
Q Consensus 208 ~l~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~-~~~~~~-~~L~~L~l~ 284 (388)
.+..+++|+ .|+++++ .++.++...+ . .++|++|++++|..+..++ ..+..+ ++|+.|+++
T Consensus 150 -----------~~~~l~~L~~~L~l~~n-~l~~i~~~~~---~-~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~ 213 (239)
T 2xwt_C 150 -----------AFQGLCNETLTLKLYNN-GFTSVQGYAF---N-GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS 213 (239)
T ss_dssp -----------TTTTTBSSEEEEECCSC-CCCEECTTTT---T-TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECT
T ss_pred -----------cccchhcceeEEEcCCC-CCcccCHhhc---C-CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECC
Confidence 234456666 6666653 4555554332 1 2567777777765455553 334556 777777777
Q ss_pred cCcCcccccchhhhcCccccceeeEcccc
Q 040122 285 KCHELINVLTLSASKNLVNLGRMMIADCK 313 (388)
Q Consensus 285 ~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 313 (388)
++ .++.++.. .+++|+.|++.++.
T Consensus 214 ~N-~l~~l~~~----~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 214 QT-SVTALPSK----GLEHLKELIARNTW 237 (239)
T ss_dssp TC-CCCCCCCT----TCTTCSEEECTTC-
T ss_pred CC-ccccCChh----HhccCceeeccCcc
Confidence 64 45554332 45677777776654
No 73
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.60 E-value=1.1e-13 Score=138.04 Aligned_cols=135 Identities=16% Similarity=0.153 Sum_probs=90.5
Q ss_pred cceeeecCCCCchhHHHHh-hhccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcC
Q 040122 25 GELHHWEGNNLNSTIQKCY-DEKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCL 103 (388)
Q Consensus 25 ~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 103 (388)
+++++..+ +.++.++ ..+..+++|++|+++++. ++.++.+. ...+++|++|+|++| .++.+++ ..+.++
T Consensus 54 ~~~LdLs~----N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~---f~~L~~L~~L~Ls~N-~l~~l~~-~~f~~L 123 (635)
T 4g8a_A 54 TKNLDLSF----NPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGA---YQSLSHLSTLILTGN-PIQSLAL-GAFSGL 123 (635)
T ss_dssp CCEEECTT----SCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTT---TTTCTTCCEEECTTC-CCCEECG-GGGTTC
T ss_pred CCEEEeeC----CCCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhH---hcCCCCCCEEEccCC-cCCCCCH-HHhcCC
Confidence 45555555 3333444 356778888888888775 66555443 245788888888888 6777544 337888
Q ss_pred CCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCccccc
Q 040122 104 NNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFT 182 (388)
Q Consensus 104 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 182 (388)
++|++|++++| .+..+++.. +..+++|++|+++++. +..+..+.. ++.+++|++|++.++ .++.++
T Consensus 124 ~~L~~L~Ls~N-~l~~l~~~~---------~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~ 189 (635)
T 4g8a_A 124 SSLQKLVAVET-NLASLENFP---------IGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSN-KIQSIY 189 (635)
T ss_dssp TTCCEEECTTS-CCCCSTTCC---------CTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSS-CCCEEC
T ss_pred CCCCEEECCCC-cCCCCChhh---------hhcCcccCeeccccCc-cccCCCchh-hccchhhhhhcccCc-cccccc
Confidence 88888888885 455554321 4678999999998763 444422333 678899999999986 455443
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.60 E-value=3.8e-14 Score=126.72 Aligned_cols=201 Identities=17% Similarity=0.220 Sum_probs=106.8
Q ss_pred CCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccCC
Q 040122 78 NNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNF 157 (388)
Q Consensus 78 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 157 (388)
++|++|++++| .++.+++.. +.++++|++|++++| .+..++... +..+++|++|+++++. +..+ +
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~---------~~~l~~L~~L~L~~n~-l~~~--~ 92 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYS-FFSFPELQVLDLSRC-EIQTIEDGA---------YQSLSHLSTLILTGNP-IQSL--A 92 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTT-TTTCTTCSEEECTTC-CCCEECTTT---------TTTCTTCCEEECTTCC-CCEE--C
T ss_pred CCccEEECCCC-cccccCHhH-hccccCCcEEECCCC-cCCccCHHH---------ccCCcCCCEEECCCCc-cCcc--C
Confidence 34555555555 344433322 455555555555554 333332210 2345555555555542 3333 1
Q ss_pred CCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEec-ccc--cccccccCCCCcceEEecCC
Q 040122 158 TGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVAN-QIQ--HLFDEKVAFPQLGNLRLSGL 234 (388)
Q Consensus 158 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~-~~~--~~~~~~~~~~~L~~L~l~~~ 234 (388)
...+..+++|++|++.++ .+..++... ++.+++|+.|++++ ... .++..++.+++|+.|+++++
T Consensus 93 ~~~~~~l~~L~~L~l~~n-~l~~~~~~~------------~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVET-NLASLENFP------------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp TTTTTTCTTCCEEECTTS-CCCCSTTCC------------CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred hhhhcCCccccEEECCCC-CccccCchh------------cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC
Confidence 122445556666666554 333333221 45555666666655 222 23455666778888888774
Q ss_pred CCcceecccCchhHhhhcccc----EEEEecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEc
Q 040122 235 HKVQHLWKENDESNKAFANLE----RLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIA 310 (388)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~L~----~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 310 (388)
.++.++...+ ..+++|+ .|+++++. +..++.......+|++|+++++ .++.++.. ....+++|++|+++
T Consensus 160 -~l~~~~~~~~---~~l~~L~~l~l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 160 -KIQSIYCTDL---RVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTN-QLKSVPDG-IFDRLTSLQKIWLH 232 (276)
T ss_dssp -CCCEECGGGG---HHHHTCTTCCEEEECCSSC-CCEECTTSSCSCCEEEEECCSS-CCSCCCTT-TTTTCCSCCEEECC
T ss_pred -CCCcCCHHHh---hhhhhccccceeeecCCCc-ccccCccccCCCcccEEECCCC-ceeecCHh-HhcccccccEEEcc
Confidence 4666554433 3344444 77777764 4444444445557888888876 46655433 23567888888888
Q ss_pred ccc
Q 040122 311 DCK 313 (388)
Q Consensus 311 ~~~ 313 (388)
+++
T Consensus 233 ~N~ 235 (276)
T 2z62_A 233 TNP 235 (276)
T ss_dssp SSC
T ss_pred CCc
Confidence 765
No 75
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.59 E-value=5.6e-17 Score=155.95 Aligned_cols=326 Identities=14% Similarity=0.049 Sum_probs=161.0
Q ss_pred CcceeeecCCCC-chhHHHHhhhccCCCCcceEEecCccccceeccccccCccccC----CccEEEecCCCCCcc----c
Q 040122 24 EGELHHWEGNNL-NSTIQKCYDEKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFN----NLAELVVDDSTNMSS----A 94 (388)
Q Consensus 24 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~----~L~~L~l~~~~~l~~----~ 94 (388)
+++.++..++.. ......++..+..+++|++|+++++. +.+..... +. ..++ +|++|++++| .++. .
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~-l~-~~l~~~~~~L~~L~L~~n-~i~~~~~~~ 104 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHC-VL-QGLQTPSCKIQKLSLQNC-CLTGAGCGV 104 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHH-HH-HTTCSTTCCCCEEECTTS-CCBGGGHHH
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHH-HH-HHHhhCCCceeEEEccCC-CCCHHHHHH
Confidence 344444444322 22345667777778888888888765 54321111 00 1233 6888888888 4543 1
Q ss_pred CChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCccccccc--CCCCccccCCCcceEeE
Q 040122 95 IPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFC--NFTGNIIELPKLEYLII 172 (388)
Q Consensus 95 ~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~l~~L~~L~l 172 (388)
.+ ..+.++++|++|++++|. +...... .+ ........++|++|++++|. ++... .....+..+++|++|++
T Consensus 105 l~-~~l~~~~~L~~L~Ls~n~-i~~~~~~-~l---~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L 177 (461)
T 1z7x_W 105 LS-STLRTLPTLQELHLSDNL-LGDAGLQ-LL---CEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTV 177 (461)
T ss_dssp HH-HHTTSCTTCCEEECCSSB-CHHHHHH-HH---HHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEEC
T ss_pred HH-HHHccCCceeEEECCCCc-CchHHHH-HH---HHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEEC
Confidence 12 236788888888888864 3221000 00 00001224567777777663 22210 00011345667777777
Q ss_pred ecCCCcccccCCc-----------ceeeecccC----------CCccccccCCceEEEecc-ccc-----cccc-ccCCC
Q 040122 173 ENCPDMETFTSNS-----------TFVLHMTAD----------NKEPQKLKSEENLLVANQ-IQH-----LFDE-KVAFP 224 (388)
Q Consensus 173 ~~c~~l~~~~~~~-----------~~~~~l~~~----------~~~l~~l~~L~~L~l~~~-~~~-----~~~~-~~~~~ 224 (388)
++|. +....... .+...+... ...+..+++|+.|+++++ ... +... ...++
T Consensus 178 ~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~ 256 (461)
T 1z7x_W 178 SNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS 256 (461)
T ss_dssp CSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred cCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCC
Confidence 7653 33221111 000011110 002345677777777661 111 1111 12466
Q ss_pred CcceEEecCCCCcceecccCc-hhHhhhccccEEEEecCCCcccccCCcc-----ccCCCCEEeeccCcCcccccc---h
Q 040122 225 QLGNLRLSGLHKVQHLWKEND-ESNKAFANLERLEISECSKLQKLVPPSW-----HLENLEALKVSKCHELINVLT---L 295 (388)
Q Consensus 225 ~L~~L~l~~~~~l~~~~~~~~-~~~~~~~~L~~L~i~~~~~~~~~~~~~~-----~~~~L~~L~l~~c~~l~~~~~---~ 295 (388)
+|++|++++| .++......+ .....+++|++|++++|..-...+..+. ..++|++|++++|. ++.... .
T Consensus 257 ~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~ 334 (461)
T 1z7x_W 257 RLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFS 334 (461)
T ss_dssp CCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHH
T ss_pred CceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHH
Confidence 7777777775 3443110000 0124467777777777643221111111 22578888887763 443321 1
Q ss_pred hhhcCccccceeeEccccccchhhc--ccccccCCccccccccceEecccCCCcc-----eecCCCccccCCCcceEEec
Q 040122 296 SASKNLVNLGRMMIADCKMIEQIIQ--LQVGEEAKDCNVFKELEYLGLDCLPSLT-----SFCLGNYALEFPSLKQVVVR 368 (388)
Q Consensus 296 ~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~~~~~~~~~~~~~L~~L~l~ 368 (388)
.....+++|++|++++|. +.+... ....+. ...++|++|++++|. ++ .++.... .+++|++|+++
T Consensus 335 ~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~----~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~--~~~~L~~L~l~ 406 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNNR-LEDAGVRELCQGLG----QPGSVLRVLWLADCD-VSDSSCSSLAATLL--ANHSLRELDLS 406 (461)
T ss_dssp HHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHT----STTCCCCEEECTTSC-CCHHHHHHHHHHHH--HCCCCCEEECC
T ss_pred HHHhhCCCccEEEccCCc-cccccHHHHHHHHc----CCCCceEEEECCCCC-CChhhHHHHHHHHH--hCCCccEEECC
Confidence 223456788888888774 332211 000000 114688888888874 44 3333322 27889999998
Q ss_pred cCC
Q 040122 369 QCP 371 (388)
Q Consensus 369 ~c~ 371 (388)
+|+
T Consensus 407 ~N~ 409 (461)
T 1z7x_W 407 NNC 409 (461)
T ss_dssp SSS
T ss_pred CCC
Confidence 876
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.59 E-value=5.5e-14 Score=126.60 Aligned_cols=199 Identities=16% Similarity=0.077 Sum_probs=134.0
Q ss_pred ccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceeccccc
Q 040122 46 KIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEE 125 (388)
Q Consensus 46 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~ 125 (388)
+..+++++++++++.. ++.++.+. .++++.|++++| .++...+.. +.++++|++|++++| .+..++..
T Consensus 6 ~~~l~~l~~l~~~~~~-l~~ip~~~------~~~l~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~-- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN-LTALPPDL------PKDTTILHLSEN-LLYTFSLAT-LMPYTRLTQLNLDRA-ELTKLQVD-- 73 (290)
T ss_dssp EECSTTCCEEECTTSC-CSSCCSCC------CTTCCEEECTTS-CCSEEEGGG-GTTCTTCCEEECTTS-CCCEEECC--
T ss_pred ccccCCccEEECCCCC-CCcCCCCC------CCCCCEEEcCCC-cCCccCHHH-hhcCCCCCEEECCCC-ccCcccCC--
Confidence 3456788888887654 65544333 478888999888 566644433 788888999999885 45555432
Q ss_pred ccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCc
Q 040122 126 LSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEE 205 (388)
Q Consensus 126 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~ 205 (388)
..+++|+.|+++++ .+..+ +.. +..+++|++|+++++ .++.++... +..+++|+
T Consensus 74 ---------~~l~~L~~L~Ls~N-~l~~l--~~~-~~~l~~L~~L~l~~N-~l~~l~~~~------------~~~l~~L~ 127 (290)
T 1p9a_G 74 ---------GTLPVLGTLDLSHN-QLQSL--PLL-GQTLPALTVLDVSFN-RLTSLPLGA------------LRGLGELQ 127 (290)
T ss_dssp ---------SCCTTCCEEECCSS-CCSSC--CCC-TTTCTTCCEEECCSS-CCCCCCSST------------TTTCTTCC
T ss_pred ---------CCCCcCCEEECCCC-cCCcC--chh-hccCCCCCEEECCCC-cCcccCHHH------------HcCCCCCC
Confidence 45788888988876 35555 222 567888889988886 676666543 66777888
Q ss_pred eEEEec-ccccccc-cccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEee
Q 040122 206 NLLVAN-QIQHLFD-EKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKV 283 (388)
Q Consensus 206 ~L~l~~-~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l 283 (388)
.|++++ ....++. .+..+++|+.|+++++ .++.++...+ ..+++|+.|+++++. +..+|..+...++|+.+++
T Consensus 128 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~---~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L 202 (290)
T 1p9a_G 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLL---NGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFL 202 (290)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTT---TTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEEC
T ss_pred EEECCCCCCCccChhhcccccCCCEEECCCC-cCCccCHHHh---cCcCCCCEEECCCCc-CCccChhhcccccCCeEEe
Confidence 888777 3333333 2456778888888774 5666665432 456778888887764 4566777777777778777
Q ss_pred ccCc
Q 040122 284 SKCH 287 (388)
Q Consensus 284 ~~c~ 287 (388)
++++
T Consensus 203 ~~Np 206 (290)
T 1p9a_G 203 HGNP 206 (290)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7643
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.58 E-value=2.5e-14 Score=127.60 Aligned_cols=199 Identities=17% Similarity=0.132 Sum_probs=113.3
Q ss_pred ccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCccccccc
Q 040122 76 FFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFC 155 (388)
Q Consensus 76 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 155 (388)
.+++|+.|++.+| .++.... +..+++|++|++++|. +..++. +..+++|++|+++++ .++.+
T Consensus 39 ~l~~L~~L~l~~~-~i~~~~~---l~~l~~L~~L~l~~n~-l~~~~~-----------l~~l~~L~~L~L~~n-~l~~~- 100 (272)
T 3rfs_A 39 ELNSIDQIIANNS-DIKSVQG---IQYLPNVRYLALGGNK-LHDISA-----------LKELTNLTYLILTGN-QLQSL- 100 (272)
T ss_dssp HHTTCCEEECTTS-CCCCCTT---GGGCTTCCEEECTTSC-CCCCGG-----------GTTCTTCCEEECTTS-CCCCC-
T ss_pred cccceeeeeeCCC-Ccccccc---cccCCCCcEEECCCCC-CCCchh-----------hcCCCCCCEEECCCC-ccCcc-
Confidence 4677777777766 4554332 5677777777777753 333322 255677777777765 34444
Q ss_pred CCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEec-ccccccc-cccCCCCcceEEecC
Q 040122 156 NFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVAN-QIQHLFD-EKVAFPQLGNLRLSG 233 (388)
Q Consensus 156 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~-~~~~~~~-~~~~~~~L~~L~l~~ 233 (388)
+...+..+++|++|++.+| .++..+... ++.+++|+.|++++ ....++. .++.+++|+.|++++
T Consensus 101 -~~~~~~~l~~L~~L~L~~n-~l~~~~~~~------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 166 (272)
T 3rfs_A 101 -PNGVFDKLTNLKELVLVEN-QLQSLPDGV------------FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166 (272)
T ss_dssp -CTTTTTTCTTCCEEECTTS-CCCCCCTTT------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred -ChhHhcCCcCCCEEECCCC-cCCccCHHH------------hccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC
Confidence 2222456777777777776 455554432 45566666666665 2222222 235567777777776
Q ss_pred CCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEcccc
Q 040122 234 LHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCK 313 (388)
Q Consensus 234 ~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 313 (388)
+ .++.++...+ ..+++|++|++++|......+..+..+++|++|++++++ +...+++|++++++.+.
T Consensus 167 n-~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~---------~~~~~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 167 N-QLQSLPEGVF---DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP---------WDCTCPGIRYLSEWINK 233 (272)
T ss_dssp S-CCCCCCTTTT---TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC---------BCCCTTTTHHHHHHHHH
T ss_pred C-CcCccCHHHh---cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC---------ccccCcHHHHHHHHHHh
Confidence 4 4555443322 456677777777765443333345666777777777653 11345566666666655
Q ss_pred ccchhh
Q 040122 314 MIEQII 319 (388)
Q Consensus 314 ~~~~~~ 319 (388)
....++
T Consensus 234 ~~g~ip 239 (272)
T 3rfs_A 234 HSGVVR 239 (272)
T ss_dssp TGGGBB
T ss_pred CCCccc
Confidence 444443
No 78
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.58 E-value=4.1e-16 Score=149.88 Aligned_cols=216 Identities=16% Similarity=0.033 Sum_probs=125.4
Q ss_pred CccccEeecccCccccccc--CCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEec-cc
Q 040122 137 FPRLLSLKLIDLPKLKRFC--NFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVAN-QI 213 (388)
Q Consensus 137 ~~~L~~L~l~~~~~l~~~~--~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~-~~ 213 (388)
.++|++|++++|. ++... .....+..+++|++|++++| .++....... .......+++|+.|++++ ..
T Consensus 198 ~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l-------~~~~~~~~~~L~~L~L~~n~l 268 (461)
T 1z7x_W 198 PCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAEL-------CPGLLHPSSRLRTLWIWECGI 268 (461)
T ss_dssp CCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHH-------HHHHTSTTCCCCEEECTTSCC
T ss_pred CCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHH-------HHHHhcCCCCceEEECcCCCC
Confidence 3466777776653 22210 00011345677777777776 3443221100 000023578999999998 22
Q ss_pred cc-----ccccccCCCCcceEEecCCCCcceecccCchh--HhhhccccEEEEecCCCccc----ccCCccccCCCCEEe
Q 040122 214 QH-----LFDEKVAFPQLGNLRLSGLHKVQHLWKENDES--NKAFANLERLEISECSKLQK----LVPPSWHLENLEALK 282 (388)
Q Consensus 214 ~~-----~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~~L~~L~i~~~~~~~~----~~~~~~~~~~L~~L~ 282 (388)
.. ++..+..+++|++|+++++ .+++.....+.. ....++|++|++++|..... ++..+..+++|++|+
T Consensus 269 ~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 347 (461)
T 1z7x_W 269 TAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 347 (461)
T ss_dssp CHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEE
T ss_pred CHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEE
Confidence 22 4556667899999999986 444322111100 01236999999999974432 344556779999999
Q ss_pred eccCcCcccccchhhhc----CccccceeeEccccccc----hhhcccccccCCccccccccceEecccCCCcceecCCC
Q 040122 283 VSKCHELINVLTLSASK----NLVNLGRMMIADCKMIE----QIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTSFCLGN 354 (388)
Q Consensus 283 l~~c~~l~~~~~~~~~~----~l~~L~~L~l~~~~~~~----~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 354 (388)
++++ .+.+.....+.. ..++|++|++++|.... .++. ....+++|++|++++++ ++......
T Consensus 348 Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~--------~l~~~~~L~~L~l~~N~-i~~~~~~~ 417 (461)
T 1z7x_W 348 ISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA--------TLLANHSLRELDLSNNC-LGDAGILQ 417 (461)
T ss_dssp CCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH--------HHHHCCCCCEEECCSSS-CCHHHHHH
T ss_pred ccCC-ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH--------HHHhCCCccEEECCCCC-CCHHHHHH
Confidence 9997 566543332222 26799999999985432 2222 12346899999999974 33221110
Q ss_pred ----ccccCCCcceEEeccCCC
Q 040122 355 ----YALEFPSLKQVVVRQCPK 372 (388)
Q Consensus 355 ----~~~~~~~L~~L~l~~c~~ 372 (388)
......+|+.|++.++..
T Consensus 418 l~~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 418 LVESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTCCC
T ss_pred HHHHhccCCcchhheeeccccc
Confidence 001135788888887654
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.57 E-value=1.3e-13 Score=122.81 Aligned_cols=110 Identities=18% Similarity=0.159 Sum_probs=58.9
Q ss_pred CcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccc
Q 040122 51 DINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKE 130 (388)
Q Consensus 51 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 130 (388)
+.+.+++++.. ++.++... .+++++|++++| .++.+++.. +.++++|++|++++| .+..++..
T Consensus 17 ~~~~l~~~~~~-l~~ip~~~------~~~l~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~i~~~------- 79 (270)
T 2o6q_A 17 NKNSVDCSSKK-LTAIPSNI------PADTKKLDLQSN-KLSSLPSKA-FHRLTKLRLLYLNDN-KLQTLPAG------- 79 (270)
T ss_dssp TTTEEECTTSC-CSSCCSCC------CTTCSEEECCSS-CCSCCCTTS-SSSCTTCCEEECCSS-CCSCCCTT-------
T ss_pred CCCEEEccCCC-CCccCCCC------CCCCCEEECcCC-CCCeeCHHH-hcCCCCCCEEECCCC-ccCeeChh-------
Confidence 35566665443 44333222 356777777766 455544322 666777777777764 33443321
Q ss_pred cccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccC
Q 040122 131 EHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTS 183 (388)
Q Consensus 131 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 183 (388)
.+..+++|++|+++++. +..+ +...+..+++|++|+++++ .++.++.
T Consensus 80 --~~~~l~~L~~L~l~~n~-l~~~--~~~~~~~l~~L~~L~l~~n-~l~~~~~ 126 (270)
T 2o6q_A 80 --IFKELKNLETLWVTDNK-LQAL--PIGVFDQLVNLAELRLDRN-QLKSLPP 126 (270)
T ss_dssp --TTSSCTTCCEEECCSSC-CCCC--CTTTTTTCSSCCEEECCSS-CCCCCCT
T ss_pred --hhcCCCCCCEEECCCCc-CCcC--CHhHcccccCCCEEECCCC-ccCeeCH
Confidence 12446677777776553 3443 2222445667777777665 4444443
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.56 E-value=9.4e-15 Score=130.41 Aligned_cols=198 Identities=21% Similarity=0.224 Sum_probs=120.3
Q ss_pred ccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCccccccc
Q 040122 76 FFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFC 155 (388)
Q Consensus 76 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 155 (388)
.+.++..+.+..+ .+..... ...+++|++|+++++ .+..++. +..+++|++|+++++. +..+
T Consensus 17 ~~~~l~~l~l~~~-~~~~~~~---~~~l~~L~~L~l~~~-~i~~~~~-----------l~~l~~L~~L~l~~n~-l~~~- 78 (272)
T 3rfs_A 17 AFAETIKANLKKK-SVTDAVT---QNELNSIDQIIANNS-DIKSVQG-----------IQYLPNVRYLALGGNK-LHDI- 78 (272)
T ss_dssp HHHHHHHHHHTCS-CTTSEEC---HHHHTTCCEEECTTS-CCCCCTT-----------GGGCTTCCEEECTTSC-CCCC-
T ss_pred hHHHHHHHHhcCc-ccccccc---cccccceeeeeeCCC-Ccccccc-----------cccCCCCcEEECCCCC-CCCc-
Confidence 3555556666555 3444333 678899999999985 3555433 2568999999998874 4444
Q ss_pred CCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEec-ccccccc-cccCCCCcceEEecC
Q 040122 156 NFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVAN-QIQHLFD-EKVAFPQLGNLRLSG 233 (388)
Q Consensus 156 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~-~~~~~~~-~~~~~~~L~~L~l~~ 233 (388)
..+..+++|++|++++| .++.++... +..+++|+.|++++ ....++. .++.+++|+.|++++
T Consensus 79 ---~~l~~l~~L~~L~L~~n-~l~~~~~~~------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 142 (272)
T 3rfs_A 79 ---SALKELTNLTYLILTGN-QLQSLPNGV------------FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH 142 (272)
T ss_dssp ---GGGTTCTTCCEEECTTS-CCCCCCTTT------------TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ---hhhcCCCCCCEEECCCC-ccCccChhH------------hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCC
Confidence 23678999999999997 566665542 56677777777776 3333332 245667777777776
Q ss_pred CCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEcccc
Q 040122 234 LHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCK 313 (388)
Q Consensus 234 ~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 313 (388)
+ .++.++...+ ..+++|++|++++|......+..+..+++|++|+++++ .+..++.. ....+++|++|++++|+
T Consensus 143 n-~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 143 N-QLQSLPKGVF---DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDG-VFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp S-CCCCCCTTTT---TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSSC
T ss_pred C-ccCccCHHHh---ccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC-cCCccCHH-HHhCCcCCCEEEccCCC
Confidence 4 4555443322 45566666666666433222223455666666666665 34444332 22456666666666654
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.56 E-value=1.7e-15 Score=137.98 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=16.9
Q ss_pred cccceEecccCCCcceecCCCccccCCCcceEEeccCC
Q 040122 334 KELEYLGLDCLPSLTSFCLGNYALEFPSLKQVVVRQCP 371 (388)
Q Consensus 334 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 371 (388)
++|++|+++++ .++.++. . ..+++|++|++.+++
T Consensus 274 ~~L~~L~Ls~N-~l~~~p~-~--~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 274 AKLSVLDLSYN-RLDRNPS-P--DELPQVGNLSLKGNP 307 (312)
T ss_dssp SEEEEEECCSS-CCCSCCC-T--TTSCEEEEEECTTCT
T ss_pred CCceEEECCCC-CCCCChh-H--hhCCCCCEEeccCCC
Confidence 45555555554 3444432 2 125666666666544
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.56 E-value=1.3e-15 Score=140.15 Aligned_cols=258 Identities=14% Similarity=0.036 Sum_probs=158.1
Q ss_pred CCccEEEecCCCCCcccCChhhhhcC--CCCcEEEeccccccceecccccccccccccCCcCccccEeecccCccccccc
Q 040122 78 NNLAELVVDDSTNMSSAIPANLLRCL--NNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFC 155 (388)
Q Consensus 78 ~~L~~L~l~~~~~l~~~~~~~~~~~l--~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 155 (388)
..++.++++++. +. ...+..+ +++++|+++++......+. ...+++|++|+++++. +....
T Consensus 47 ~~~~~l~l~~~~-~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-----------~~~~~~L~~L~L~~~~-l~~~~ 109 (336)
T 2ast_B 47 SLWQTLDLTGKN-LH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-----------HFSPFRVQHMDLSNSV-IEVST 109 (336)
T ss_dssp TTSSEEECTTCB-CC----HHHHHHHHHTTCSEEECTTCEECSCCCS-----------CCCCBCCCEEECTTCE-ECHHH
T ss_pred hhheeecccccc-CC----HHHHHhhhhccceEEEcCCccccccchh-----------hccCCCCCEEEccCCC-cCHHH
Confidence 346777777652 22 1225555 7788888877532222221 2357888888888764 22210
Q ss_pred CCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEecc--cc--cccccccCCCCcceEEe
Q 040122 156 NFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVANQ--IQ--HLFDEKVAFPQLGNLRL 231 (388)
Q Consensus 156 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~~--~~--~~~~~~~~~~~L~~L~l 231 (388)
.+.. +..+++|++|++++| .++...... ++.+++|+.|+++++ .. .++..+..+++|++|++
T Consensus 110 ~~~~-~~~~~~L~~L~L~~~-~l~~~~~~~------------l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l 175 (336)
T 2ast_B 110 LHGI-LSQCSKLQNLSLEGL-RLSDPIVNT------------LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 175 (336)
T ss_dssp HHHH-HTTBCCCSEEECTTC-BCCHHHHHH------------HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEEC
T ss_pred HHHH-HhhCCCCCEEeCcCc-ccCHHHHHH------------HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcC
Confidence 0111 457788888888887 344322221 566788888888762 22 24445667899999999
Q ss_pred cCCCCcceecccCchhHhhhc-cccEEEEecCC-Cc--ccccCCccccCCCCEEeeccCcCcccccchhhhcCcccccee
Q 040122 232 SGLHKVQHLWKENDESNKAFA-NLERLEISECS-KL--QKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRM 307 (388)
Q Consensus 232 ~~~~~l~~~~~~~~~~~~~~~-~L~~L~i~~~~-~~--~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 307 (388)
++|..+++.... .....++ +|++|++++|. .+ ..++..+..+++|++|++++|..+++..... ...+++|++|
T Consensus 176 ~~~~~l~~~~~~--~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-l~~l~~L~~L 252 (336)
T 2ast_B 176 SWCFDFTEKHVQ--VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQLNYLQHL 252 (336)
T ss_dssp CCCTTCCHHHHH--HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-GGGCTTCCEE
T ss_pred CCCCCcChHHHH--HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH-HhCCCCCCEe
Confidence 998666642100 1237788 99999999985 33 3445556788999999999997666543333 3678999999
Q ss_pred eEccccccchhhcccccccCCccccccccceEecccCCCcceecCCCccccCCCcceEEeccCCCcccccCCCC
Q 040122 308 MIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGLL 381 (388)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~ 381 (388)
++++|..+... ++. ....+++|++|++.+| ++......-..++..|++.++.--+..|..++
T Consensus 253 ~l~~~~~~~~~-----~~~--~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 253 SLSRCYDIIPE-----TLL--ELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp ECTTCTTCCGG-----GGG--GGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred eCCCCCCCCHH-----HHH--HHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEecccCccccCCccc
Confidence 99999633222 111 1245799999999998 23222111012466666765443334454443
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.55 E-value=8.1e-14 Score=126.65 Aligned_cols=188 Identities=18% Similarity=0.234 Sum_probs=95.1
Q ss_pred cCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccC
Q 040122 77 FNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCN 156 (388)
Q Consensus 77 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 156 (388)
+++|++|++++| .+..++. +..+++|++|++++| .+..++. +..+++|++|+++++. +..+
T Consensus 40 l~~L~~L~l~~~-~i~~l~~---~~~l~~L~~L~L~~n-~i~~~~~-----------~~~l~~L~~L~L~~n~-l~~~-- 100 (308)
T 1h6u_A 40 LDGITTLSAFGT-GVTTIEG---VQYLNNLIGLELKDN-QITDLAP-----------LKNLTKITELELSGNP-LKNV-- 100 (308)
T ss_dssp HHTCCEEECTTS-CCCCCTT---GGGCTTCCEEECCSS-CCCCCGG-----------GTTCCSCCEEECCSCC-CSCC--
T ss_pred cCCcCEEEeeCC-CccCchh---hhccCCCCEEEccCC-cCCCChh-----------HccCCCCCEEEccCCc-CCCc--
Confidence 455555555554 3333221 445555555555553 2333222 1334555555555442 3332
Q ss_pred CCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEec-ccccccccccCCCCcceEEecCCC
Q 040122 157 FTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVAN-QIQHLFDEKVAFPQLGNLRLSGLH 235 (388)
Q Consensus 157 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~~ 235 (388)
..+..+++|++|++++| .++.++. +..+++|+.|++++ ....++. ++.+++|+.|+++++
T Consensus 101 --~~~~~l~~L~~L~l~~n-~l~~~~~--------------l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n- 161 (308)
T 1h6u_A 101 --SAIAGLQSIKTLDLTST-QITDVTP--------------LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA- 161 (308)
T ss_dssp --GGGTTCTTCCEEECTTS-CCCCCGG--------------GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-
T ss_pred --hhhcCCCCCCEEECCCC-CCCCchh--------------hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-
Confidence 11444555555555554 2333321 34455555555554 1222211 455666777777664
Q ss_pred CcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEcccc
Q 040122 236 KVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCK 313 (388)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 313 (388)
.++.++. ...+++|+.|++++|. +..++. +..+++|++|+++++ .+.+.+. ...+++|+.|++++|+
T Consensus 162 ~l~~~~~-----l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 162 QVSDLTP-----LANLSKLTTLKADDNK-ISDISP-LASLPNLIEVHLKNN-QISDVSP---LANTSNLFIVTLTNQT 228 (308)
T ss_dssp CCCCCGG-----GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECTTS-CCCBCGG---GTTCTTCCEEEEEEEE
T ss_pred cCCCChh-----hcCCCCCCEEECCCCc-cCcChh-hcCCCCCCEEEccCC-ccCcccc---ccCCCCCCEEEccCCe
Confidence 3444432 1556677777777664 333332 566677777777775 4554432 2567777777777765
No 84
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.54 E-value=1.7e-13 Score=122.51 Aligned_cols=201 Identities=16% Similarity=0.132 Sum_probs=142.6
Q ss_pred CCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceeccccccccc
Q 040122 50 LDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAK 129 (388)
Q Consensus 50 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~ 129 (388)
++|++|+++++. +....... ...+++|++|++++| .++.+++.. +.++++|++|++++|. +..++...
T Consensus 28 ~~l~~L~ls~n~-l~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~----- 95 (276)
T 2z62_A 28 FSTKNLDLSFNP-LRHLGSYS---FFSFPELQVLDLSRC-EIQTIEDGA-YQSLSHLSTLILTGNP-IQSLALGA----- 95 (276)
T ss_dssp TTCCEEECTTCC-CCEECTTT---TTTCTTCSEEECTTC-CCCEECTTT-TTTCTTCCEEECTTCC-CCEECTTT-----
T ss_pred CCccEEECCCCc-ccccCHhH---hccccCCcEEECCCC-cCCccCHHH-ccCCcCCCEEECCCCc-cCccChhh-----
Confidence 679999999876 66554322 256899999999998 677755533 7899999999999964 45443211
Q ss_pred ccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEE
Q 040122 130 EEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLV 209 (388)
Q Consensus 130 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l 209 (388)
+..+++|++|+++++. +..+ +...+..+++|++|+++++ .++....... +..+++|+.|++
T Consensus 96 ----~~~l~~L~~L~l~~n~-l~~~--~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~-----------~~~l~~L~~L~L 156 (276)
T 2z62_A 96 ----FSGLSSLQKLVAVETN-LASL--ENFPIGHLKTLKELNVAHN-LIQSFKLPEY-----------FSNLTNLEHLDL 156 (276)
T ss_dssp ----TTTCTTCCEEECTTSC-CCCS--TTCCCTTCTTCCEEECCSS-CCCCCCCCGG-----------GGGCTTCCEEEC
T ss_pred ----hcCCccccEEECCCCC-cccc--CchhcccCCCCCEEECcCC-ccceecCchh-----------hccCCCCCEEEC
Confidence 4668999999998874 4444 2223678999999999997 5655432222 788999999999
Q ss_pred ec-ccccc-cccccCCCCcc----eEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCC-ccccCCCCEEe
Q 040122 210 AN-QIQHL-FDEKVAFPQLG----NLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPP-SWHLENLEALK 282 (388)
Q Consensus 210 ~~-~~~~~-~~~~~~~~~L~----~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~-~~~~~~L~~L~ 282 (388)
++ ....+ +..+..+++|+ +|+++++ .++.++... ....+|++|++++|. +..++.. +..+++|+.|+
T Consensus 157 s~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~----~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 230 (276)
T 2z62_A 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGA----FKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIW 230 (276)
T ss_dssp CSSCCCEECGGGGHHHHTCTTCCEEEECCSS-CCCEECTTS----SCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEE
T ss_pred CCCCCCcCCHHHhhhhhhccccceeeecCCC-cccccCccc----cCCCcccEEECCCCc-eeecCHhHhcccccccEEE
Confidence 98 33322 23344455555 7888884 577776554 233489999999986 5555544 57899999999
Q ss_pred eccCc
Q 040122 283 VSKCH 287 (388)
Q Consensus 283 l~~c~ 287 (388)
+++++
T Consensus 231 l~~N~ 235 (276)
T 2z62_A 231 LHTNP 235 (276)
T ss_dssp CCSSC
T ss_pred ccCCc
Confidence 99863
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.54 E-value=3.3e-13 Score=120.22 Aligned_cols=199 Identities=19% Similarity=0.146 Sum_probs=140.2
Q ss_pred CCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccCC
Q 040122 78 NNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNF 157 (388)
Q Consensus 78 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 157 (388)
.+.++++++++ .++.+|. . -.+++++|+++++ .+..++... +..+++|++|+++++ .++.+ +
T Consensus 16 ~~~~~l~~~~~-~l~~ip~-~---~~~~l~~L~l~~n-~l~~~~~~~---------~~~l~~L~~L~l~~n-~l~~i--~ 77 (270)
T 2o6q_A 16 NNKNSVDCSSK-KLTAIPS-N---IPADTKKLDLQSN-KLSSLPSKA---------FHRLTKLRLLYLNDN-KLQTL--P 77 (270)
T ss_dssp TTTTEEECTTS-CCSSCCS-C---CCTTCSEEECCSS-CCSCCCTTS---------SSSCTTCCEEECCSS-CCSCC--C
T ss_pred CCCCEEEccCC-CCCccCC-C---CCCCCCEEECcCC-CCCeeCHHH---------hcCCCCCCEEECCCC-ccCee--C
Confidence 46789999877 6776443 2 2367999999996 455554311 467899999999886 35555 3
Q ss_pred CCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEec-cccccc-ccccCCCCcceEEecCCC
Q 040122 158 TGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVAN-QIQHLF-DEKVAFPQLGNLRLSGLH 235 (388)
Q Consensus 158 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~-~~~~~~-~~~~~~~~L~~L~l~~~~ 235 (388)
...+..+++|++|++.++ .++.++... +..+++|+.|++++ ....++ ..++.+++|++|+++++
T Consensus 78 ~~~~~~l~~L~~L~l~~n-~l~~~~~~~------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n- 143 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDN-KLQALPIGV------------FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN- 143 (270)
T ss_dssp TTTTSSCTTCCEEECCSS-CCCCCCTTT------------TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred hhhhcCCCCCCEEECCCC-cCCcCCHhH------------cccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-
Confidence 332467999999999997 577666543 67889999999987 333333 34567889999999885
Q ss_pred CcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEcccc
Q 040122 236 KVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCK 313 (388)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 313 (388)
.++.++...+ ..+++|++|++++|......+..+..+++|++|+++++ .++.++.. ....+++|+.|++++|+
T Consensus 144 ~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 144 ELQSLPKGVF---DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEG-AFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCCCCCTTTT---TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSSC
T ss_pred cCCccCHhHc---cCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC-cCCcCCHH-HhccccCCCEEEecCCC
Confidence 5666665433 66788999999887543333334677889999999886 56665443 23567888999888775
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.54 E-value=9.2e-14 Score=126.27 Aligned_cols=193 Identities=18% Similarity=0.242 Sum_probs=144.4
Q ss_pred CCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceeccccccc
Q 040122 48 GFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELS 127 (388)
Q Consensus 48 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~ 127 (388)
.+++|++|+++++. +...+ +. ..+++|++|++++| .+..+++ +.++++|++|++++|. +..++.
T Consensus 39 ~l~~L~~L~l~~~~-i~~l~-~~----~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n~-l~~~~~----- 102 (308)
T 1h6u_A 39 DLDGITTLSAFGTG-VTTIE-GV----QYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGNP-LKNVSA----- 102 (308)
T ss_dssp HHHTCCEEECTTSC-CCCCT-TG----GGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSCC-CSCCGG-----
T ss_pred HcCCcCEEEeeCCC-ccCch-hh----hccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCCc-CCCchh-----
Confidence 46789999999875 65443 22 56899999999988 6776554 7899999999999964 555533
Q ss_pred ccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceE
Q 040122 128 AKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENL 207 (388)
Q Consensus 128 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L 207 (388)
+..+++|++|+++++. +..+. .+..+++|++|++++| .++..+. +..+++|+.|
T Consensus 103 ------~~~l~~L~~L~l~~n~-l~~~~----~l~~l~~L~~L~l~~n-~l~~~~~--------------l~~l~~L~~L 156 (308)
T 1h6u_A 103 ------IAGLQSIKTLDLTSTQ-ITDVT----PLAGLSNLQVLYLDLN-QITNISP--------------LAGLTNLQYL 156 (308)
T ss_dssp ------GTTCTTCCEEECTTSC-CCCCG----GGTTCTTCCEEECCSS-CCCCCGG--------------GGGCTTCCEE
T ss_pred ------hcCCCCCCEEECCCCC-CCCch----hhcCCCCCCEEECCCC-ccCcCcc--------------ccCCCCccEE
Confidence 3668999999998874 55542 2678999999999997 5655542 6778999999
Q ss_pred EEec-ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccC
Q 040122 208 LVAN-QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKC 286 (388)
Q Consensus 208 ~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c 286 (388)
++++ ....++. +..+++|+.|+++++ .++.++. ...+++|++|++++|.. ..++ .+..+++|+.|+++++
T Consensus 157 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-----l~~l~~L~~L~L~~N~l-~~~~-~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 157 SIGNAQVSDLTP-LANLSKLTTLKADDN-KISDISP-----LASLPNLIEVHLKNNQI-SDVS-PLANTSNLFIVTLTNQ 227 (308)
T ss_dssp ECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-----GGGCTTCCEEECTTSCC-CBCG-GGTTCTTCCEEEEEEE
T ss_pred EccCCcCCCChh-hcCCCCCCEEECCCC-ccCcChh-----hcCCCCCCEEEccCCcc-Cccc-cccCCCCCCEEEccCC
Confidence 9998 3333333 778899999999985 5666553 27789999999999854 4444 3788999999999986
Q ss_pred cCcccc
Q 040122 287 HELINV 292 (388)
Q Consensus 287 ~~l~~~ 292 (388)
+ +...
T Consensus 228 ~-i~~~ 232 (308)
T 1h6u_A 228 T-ITNQ 232 (308)
T ss_dssp E-EECC
T ss_pred e-eecC
Confidence 3 4443
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.50 E-value=7.5e-13 Score=119.14 Aligned_cols=198 Identities=19% Similarity=0.113 Sum_probs=147.6
Q ss_pred cccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccc
Q 040122 75 RFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRF 154 (388)
Q Consensus 75 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 154 (388)
..++++++++++++ .++.+++. -.+++++|++++|. +..++... +..+++|++|+++++. ++.+
T Consensus 7 ~~l~~l~~l~~~~~-~l~~ip~~----~~~~l~~L~L~~N~-l~~~~~~~---------~~~l~~L~~L~L~~n~-l~~~ 70 (290)
T 1p9a_G 7 SKVASHLEVNCDKR-NLTALPPD----LPKDTTILHLSENL-LYTFSLAT---------LMPYTRLTQLNLDRAE-LTKL 70 (290)
T ss_dssp ECSTTCCEEECTTS-CCSSCCSC----CCTTCCEEECTTSC-CSEEEGGG---------GTTCTTCCEEECTTSC-CCEE
T ss_pred cccCCccEEECCCC-CCCcCCCC----CCCCCCEEEcCCCc-CCccCHHH---------hhcCCCCCEEECCCCc-cCcc
Confidence 46889999999987 67775442 23789999999964 55443211 4678999999999864 5665
Q ss_pred cCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEec-cccccc-ccccCCCCcceEEec
Q 040122 155 CNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVAN-QIQHLF-DEKVAFPQLGNLRLS 232 (388)
Q Consensus 155 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~-~~~~~~-~~~~~~~~L~~L~l~ 232 (388)
.. .+.+++|++|+++++ .++.++.. +..+++|+.|++++ ....++ ..+..+++|+.|+++
T Consensus 71 ~~----~~~l~~L~~L~Ls~N-~l~~l~~~-------------~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~ 132 (290)
T 1p9a_G 71 QV----DGTLPVLGTLDLSHN-QLQSLPLL-------------GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132 (290)
T ss_dssp EC----CSCCTTCCEEECCSS-CCSSCCCC-------------TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECT
T ss_pred cC----CCCCCcCCEEECCCC-cCCcCchh-------------hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECC
Confidence 22 358999999999997 67766653 67899999999998 444444 457788999999999
Q ss_pred CCCCcceecccCchhHhhhccccEEEEecCCCcccccCC-ccccCCCCEEeeccCcCcccccchhhhcCccccceeeEcc
Q 040122 233 GLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPP-SWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIAD 311 (388)
Q Consensus 233 ~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 311 (388)
++ .++.++...+ ..+++|+.|+++++. +..++.. +..+++|++|+++++ .++.++.. ....++|+.+++.+
T Consensus 133 ~N-~l~~~~~~~~---~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~--~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 133 GN-ELKTLPPGLL---TPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQEN-SLYTIPKG--FFGSHLLPFAFLHG 204 (290)
T ss_dssp TS-CCCCCCTTTT---TTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSS-CCCCCCTT--TTTTCCCSEEECCS
T ss_pred CC-CCCccChhhc---ccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCC-cCCccChh--hcccccCCeEEeCC
Confidence 85 5777765543 567899999999975 4556554 467899999999986 56666543 24567899999987
Q ss_pred ccc
Q 040122 312 CKM 314 (388)
Q Consensus 312 ~~~ 314 (388)
++.
T Consensus 205 Np~ 207 (290)
T 1p9a_G 205 NPW 207 (290)
T ss_dssp CCB
T ss_pred CCc
Confidence 753
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.49 E-value=3.9e-14 Score=128.88 Aligned_cols=154 Identities=19% Similarity=0.163 Sum_probs=85.9
Q ss_pred cCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEecc-ccc---cc--ccccCCCCcceEEecCCCC
Q 040122 163 ELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVANQ-IQH---LF--DEKVAFPQLGNLRLSGLHK 236 (388)
Q Consensus 163 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~~-~~~---~~--~~~~~~~~L~~L~l~~~~~ 236 (388)
.+++|++|++++| .+...+... ++.+++|+.|+++++ ... ++ ...+.+++|++|+++++ .
T Consensus 143 ~~~~L~~L~Ls~n-~l~~~~~~~------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~ 208 (310)
T 4glp_A 143 LKPGLKVLSIAQA-HSPAFSCEQ------------VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-G 208 (310)
T ss_dssp BCSCCCEEEEECC-SSCCCCTTS------------CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-C
T ss_pred hccCCCEEEeeCC-CcchhhHHH------------hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-C
Confidence 4566666666665 344443332 455666666666652 111 11 22245677777777775 3
Q ss_pred cceecccCchhHhhhccccEEEEecCCCcccccCCcccc---CCCCEEeeccCcCcccccchhhhcCccccceeeEcccc
Q 040122 237 VQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHL---ENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCK 313 (388)
Q Consensus 237 l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~---~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 313 (388)
++.++.........+++|++|++++|......|..+..+ ++|++|+++++ .++.++.. + .++|++|++++|.
T Consensus 209 l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~-~---~~~L~~L~Ls~N~ 283 (310)
T 4glp_A 209 METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKG-L---PAKLRVLDLSSNR 283 (310)
T ss_dssp CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSC-C---CSCCSCEECCSCC
T ss_pred CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhh-h---cCCCCEEECCCCc
Confidence 444332111112456778888888776554445555554 68888888775 45554332 1 2678888888774
Q ss_pred ccchhhcccccccCCccccccccceEecccCC
Q 040122 314 MIEQIIQLQVGEEAKDCNVFKELEYLGLDCLP 345 (388)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 345 (388)
++.++. ...+++|+.|++++++
T Consensus 284 -l~~~~~---------~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 284 -LNRAPQ---------PDELPEVDNLTLDGNP 305 (310)
T ss_dssp -CCSCCC---------TTSCCCCSCEECSSTT
T ss_pred -CCCCch---------hhhCCCccEEECcCCC
Confidence 333221 1345778888887754
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.45 E-value=7.3e-15 Score=137.94 Aligned_cols=250 Identities=15% Similarity=0.104 Sum_probs=133.2
Q ss_pred hhHHHHhhhccCCCCcceEEecCccccceecccc-ccCccccCCccEEEecCC--CCCcccCChhh------hhcCCCCc
Q 040122 37 STIQKCYDEKIGFLDINRLQLSHFPRLQEIWHGQ-ALPVRFFNNLAELVVDDS--TNMSSAIPANL------LRCLNNLE 107 (388)
Q Consensus 37 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~~L~~L~l~~~--~~l~~~~~~~~------~~~l~~L~ 107 (388)
..++.++..+..+++|++|+++++. +....... +.....+++|++|++++| ..+....|..+ +.++++|+
T Consensus 19 ~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~ 97 (386)
T 2ca6_A 19 EDEKSVFAVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH 97 (386)
T ss_dssp HHHHTTSHHHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred HHHHHHHHHHhcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCccc
Confidence 4455666666677888888888775 44221100 001145788888888877 23333233331 36778888
Q ss_pred EEEeccccccc----eecccccccccccccCCcCccccEeecccCcccccccC--CCCccccC---------CCcceEeE
Q 040122 108 WLAVRNCDSLE----EVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCN--FTGNIIEL---------PKLEYLII 172 (388)
Q Consensus 108 ~L~l~~~~~l~----~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~l---------~~L~~L~l 172 (388)
+|++++|..-. .++.. +..+++|++|++++|.. ..... ....+..+ ++|++|++
T Consensus 98 ~L~Ls~n~l~~~~~~~l~~~----------l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 98 TVRLSDNAFGPTAQEPLIDF----------LSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp EEECCSCCCCTTTHHHHHHH----------HHHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred EEECCCCcCCHHHHHHHHHH----------HHhCCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence 88888864222 12211 24578888888887743 21100 00002223 78888888
Q ss_pred ecCCCcccccCCcceeeecccCCCccccccCCceEEEecc-cc-----cccc-cccCCCCcceEEecCCCCcc-----ee
Q 040122 173 ENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVANQ-IQ-----HLFD-EKVAFPQLGNLRLSGLHKVQ-----HL 240 (388)
Q Consensus 173 ~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~~-~~-----~~~~-~~~~~~~L~~L~l~~~~~l~-----~~ 240 (388)
.+| .++....... ...+..+++|+.|+++++ .. .+.. .+..+++|+.|+++++. ++ .+
T Consensus 167 ~~n-~l~~~~~~~l--------~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l 236 (386)
T 2ca6_A 167 GRN-RLENGSMKEW--------AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSAL 236 (386)
T ss_dssp CSS-CCTGGGHHHH--------HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHH
T ss_pred CCC-CCCcHHHHHH--------HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHH
Confidence 886 3432111100 001446667777777761 11 1222 55667777777777653 32 22
Q ss_pred cccCchhHhhhccccEEEEecCCCccc----ccCCc--cccCCCCEEeeccCcCccc-----ccchhhhcCccccceeeE
Q 040122 241 WKENDESNKAFANLERLEISECSKLQK----LVPPS--WHLENLEALKVSKCHELIN-----VLTLSASKNLVNLGRMMI 309 (388)
Q Consensus 241 ~~~~~~~~~~~~~L~~L~i~~~~~~~~----~~~~~--~~~~~L~~L~l~~c~~l~~-----~~~~~~~~~l~~L~~L~l 309 (388)
+. ....+++|++|++++|..... ++..+ +.+++|++|++++| .+.. ++ ..+..++++|++|++
T Consensus 237 ~~----~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~-~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 237 AI----ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLK-TVIDEKMPDLLFLEL 310 (386)
T ss_dssp HH----HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHH-HHHHHHCTTCCEEEC
T ss_pred HH----HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHH-HHHHhcCCCceEEEc
Confidence 21 114556777777777653322 23333 23667777777765 3443 21 112245677777777
Q ss_pred ccccc
Q 040122 310 ADCKM 314 (388)
Q Consensus 310 ~~~~~ 314 (388)
++|+.
T Consensus 311 ~~N~l 315 (386)
T 2ca6_A 311 NGNRF 315 (386)
T ss_dssp TTSBS
T ss_pred cCCcC
Confidence 77653
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.45 E-value=1.2e-12 Score=119.07 Aligned_cols=234 Identities=20% Similarity=0.190 Sum_probs=140.3
Q ss_pred CCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhh-hcCCCCcEEEeccccccceecccccccc
Q 040122 50 LDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLL-RCLNNLEWLAVRNCDSLEEVLHLEELSA 128 (388)
Q Consensus 50 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-~~l~~L~~L~l~~~~~l~~i~~~~~~~~ 128 (388)
..++.+.+.++. +.............+++|++|++++| .+....+..++ .++++|++|++++|......+......
T Consensus 64 ~~l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~- 140 (310)
T 4glp_A 64 LRVRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ- 140 (310)
T ss_dssp CCCCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH-
T ss_pred cceeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH-
Confidence 456777777654 32111000000123566888888887 45544444322 778888888888864332222111100
Q ss_pred cccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCccc--ccCCcceeeecccCCCccccccCCce
Q 040122 129 KEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMET--FTSNSTFVLHMTADNKEPQKLKSEEN 206 (388)
Q Consensus 129 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--~~~~~~~~~~l~~~~~~l~~l~~L~~ 206 (388)
...+++|++|+++++. +..+ +...+..+++|++|+++++.-... ++.... +..+++|+.
T Consensus 141 -----~~~~~~L~~L~Ls~n~-l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-----------~~~l~~L~~ 201 (310)
T 4glp_A 141 -----QWLKPGLKVLSIAQAH-SPAF--SCEQVRAFPALTSLDLSDNPGLGERGLMAALC-----------PHKFPAIQN 201 (310)
T ss_dssp -----TTBCSCCCEEEEECCS-SCCC--CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSC-----------TTSSCCCCS
T ss_pred -----hhhccCCCEEEeeCCC-cchh--hHHHhccCCCCCEEECCCCCCccchhhhHHHh-----------hhcCCCCCE
Confidence 2357888888887764 3444 223356788888888888743221 322222 456788888
Q ss_pred EEEec-ccccccc----cccCCCCcceEEecCCCCccee-cccCchhHhhhccccEEEEecCCCcccccCCccccCCCCE
Q 040122 207 LLVAN-QIQHLFD----EKVAFPQLGNLRLSGLHKVQHL-WKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEA 280 (388)
Q Consensus 207 L~l~~-~~~~~~~----~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~ 280 (388)
|++++ ....++. ..+.+++|++|+++++ .++.. +... .....+++|++|++++|. ++.+|..+. ++|+.
T Consensus 202 L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~-~~~~~~~~L~~L~Ls~N~-l~~lp~~~~--~~L~~ 276 (310)
T 4glp_A 202 LALRNTGMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPSA-PRCMWSSALNSLNLSFAG-LEQVPKGLP--AKLRV 276 (310)
T ss_dssp CBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSCC-SSCCCCTTCCCEECCSSC-CCSCCSCCC--SCCSC
T ss_pred EECCCCCCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchhhH-HhccCcCcCCEEECCCCC-CCchhhhhc--CCCCE
Confidence 88887 2222221 1356789999999885 45554 3222 111223799999999875 447776654 79999
Q ss_pred EeeccCcCcccccchhhhcCccccceeeEccccc
Q 040122 281 LKVSKCHELINVLTLSASKNLVNLGRMMIADCKM 314 (388)
Q Consensus 281 L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 314 (388)
|+++++ .++.++. ...+++|+.|++++|+.
T Consensus 277 L~Ls~N-~l~~~~~---~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 277 LDLSSN-RLNRAPQ---PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp EECCSC-CCCSCCC---TTSCCCCSCEECSSTTT
T ss_pred EECCCC-cCCCCch---hhhCCCccEEECcCCCC
Confidence 999986 5666543 36789999999998853
No 91
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.45 E-value=2.6e-13 Score=123.57 Aligned_cols=229 Identities=21% Similarity=0.201 Sum_probs=149.8
Q ss_pred cceEEecCcccccee--cccc---ccCccccCCccEEEecCCCCCcccCChhh-hhcCCCCcEEEeccccccceeccc-c
Q 040122 52 INRLQLSHFPRLQEI--WHGQ---ALPVRFFNNLAELVVDDSTNMSSAIPANL-LRCLNNLEWLAVRNCDSLEEVLHL-E 124 (388)
Q Consensus 52 L~~L~l~~~~~l~~~--~~~~---~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~L~~L~l~~~~~l~~i~~~-~ 124 (388)
|++|+++++. +... +... ......+++|++|++++| .+....|..+ +..+++|++|++++|. +..+|.. .
T Consensus 65 L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 141 (312)
T 1wwl_A 65 IKSLSLKRLT-VRAARIPSRILFGALRVLGISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLA 141 (312)
T ss_dssp HHHCCCCEEE-EEEEECBHHHHHHHHHHHTTSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHH
T ss_pred Hhhccccccc-ccCCCcCHHHHHHHHHhcCcCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHH
Confidence 7777777654 4321 1111 000014789999999998 4554344442 2889999999999964 4443321 0
Q ss_pred cccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCccc--ccCCcceeeecccCCCcccccc
Q 040122 125 ELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMET--FTSNSTFVLHMTADNKEPQKLK 202 (388)
Q Consensus 125 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--~~~~~~~~~~l~~~~~~l~~l~ 202 (388)
.+. ....++|++|+++++. +..+ +...++.+++|++|+++++.-... .+.... +..++
T Consensus 142 ~l~------~~~~~~L~~L~L~~N~-l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-----------~~~l~ 201 (312)
T 1wwl_A 142 ELQ------QWLKPGLKVLSIAQAH-SLNF--SCEQVRVFPALSTLDLSDNPELGERGLISALC-----------PLKFP 201 (312)
T ss_dssp HHH------TTCCTTCCEEEEESCS-CCCC--CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC-----------TTSCT
T ss_pred HHH------HhhcCCCcEEEeeCCC-Cccc--hHHHhccCCCCCEEECCCCCcCcchHHHHHHH-----------hccCC
Confidence 000 0113899999998874 4555 323377899999999999853322 121211 37789
Q ss_pred CCceEEEec-ccc---cccc-cccCCCCcceEEecCCCCcceecc-cCchhHhhhccccEEEEecCCCcccccCCccccC
Q 040122 203 SEENLLVAN-QIQ---HLFD-EKVAFPQLGNLRLSGLHKVQHLWK-ENDESNKAFANLERLEISECSKLQKLVPPSWHLE 276 (388)
Q Consensus 203 ~L~~L~l~~-~~~---~~~~-~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~ 276 (388)
+|+.|++++ ... .++. ....+++|+.|+++++ .++...+ ... ..+++|++|++++|. ++.+|..+. +
T Consensus 202 ~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~---~~l~~L~~L~Ls~N~-l~~ip~~~~--~ 274 (312)
T 1wwl_A 202 TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSC---DWPSQLNSLNLSFTG-LKQVPKGLP--A 274 (312)
T ss_dssp TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSCC---CCCTTCCEEECTTSC-CSSCCSSCC--S
T ss_pred CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhhh---hhcCCCCEEECCCCc-cChhhhhcc--C
Confidence 999999988 332 2222 2246789999999985 4555331 111 456899999999986 457777665 8
Q ss_pred CCCEEeeccCcCcccccchhhhcCccccceeeEccccc
Q 040122 277 NLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKM 314 (388)
Q Consensus 277 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 314 (388)
+|++|+++++ .++.++. ...+++|++|++++++.
T Consensus 275 ~L~~L~Ls~N-~l~~~p~---~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 275 KLSVLDLSYN-RLDRNPS---PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp EEEEEECCSS-CCCSCCC---TTTSCEEEEEECTTCTT
T ss_pred CceEEECCCC-CCCCChh---HhhCCCCCEEeccCCCC
Confidence 9999999986 6777643 36889999999998853
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.40 E-value=6.4e-12 Score=110.55 Aligned_cols=176 Identities=17% Similarity=0.174 Sum_probs=92.6
Q ss_pred CcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccc
Q 040122 51 DINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKE 130 (388)
Q Consensus 51 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 130 (388)
+.+++++++.. +..++.+. .+++++|++++| .+....+.. +.++++|++|++++| .+..++..
T Consensus 15 ~~~~l~~~~~~-l~~~p~~~------~~~l~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~------- 77 (251)
T 3m19_A 15 GKKEVDCQGKS-LDSVPSGI------PADTEKLDLQST-GLATLSDAT-FRGLTKLTWLNLDYN-QLQTLSAG------- 77 (251)
T ss_dssp GGTEEECTTCC-CSSCCSCC------CTTCCEEECTTS-CCCCCCTTT-TTTCTTCCEEECTTS-CCCCCCTT-------
T ss_pred CCeEEecCCCC-ccccCCCC------CCCCCEEEccCC-CcCccCHhH-hcCcccCCEEECCCC-cCCccCHh-------
Confidence 34555655443 44333222 356667777666 444433322 566677777777664 33333221
Q ss_pred cccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEe
Q 040122 131 EHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVA 210 (388)
Q Consensus 131 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~ 210 (388)
.+..+++|++|+++++. ++.+ +...+..+++|++|+++++ .++.++...
T Consensus 78 --~~~~l~~L~~L~L~~n~-l~~~--~~~~~~~l~~L~~L~L~~N-~l~~~~~~~------------------------- 126 (251)
T 3m19_A 78 --VFDDLTELGTLGLANNQ-LASL--PLGVFDHLTQLDKLYLGGN-QLKSLPSGV------------------------- 126 (251)
T ss_dssp --TTTTCTTCCEEECTTSC-CCCC--CTTTTTTCTTCCEEECCSS-CCCCCCTTT-------------------------
T ss_pred --HhccCCcCCEEECCCCc-cccc--ChhHhcccCCCCEEEcCCC-cCCCcChhH-------------------------
Confidence 02446666666666542 3333 2222445666666666664 444443321
Q ss_pred cccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccCc
Q 040122 211 NQIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKCH 287 (388)
Q Consensus 211 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 287 (388)
+..+++|+.|+++++ .++.++...+ ..+++|++|++++|......+..+..+++|++|++++++
T Consensus 127 ---------~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 127 ---------FDRLTKLKELRLNTN-QLQSIPAGAF---DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp ---------TTTCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ---------hccCCcccEEECcCC-cCCccCHHHc---CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 234556666666653 4555544322 455667777777664333333355667778888887753
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.37 E-value=8.6e-14 Score=130.59 Aligned_cols=268 Identities=11% Similarity=0.023 Sum_probs=166.1
Q ss_pred cCcceeeecCCCCc-hhHHHHhhhccCCCCcceEEecCcc--ccce-eccccc---cCccccCCccEEEecCCCCCcc--
Q 040122 23 EEGELHHWEGNNLN-STIQKCYDEKIGFLDINRLQLSHFP--RLQE-IWHGQA---LPVRFFNNLAELVVDDSTNMSS-- 93 (388)
Q Consensus 23 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~L~~L~l~~~~--~l~~-~~~~~~---~~~~~~~~L~~L~l~~~~~l~~-- 93 (388)
..+..++..++... .....++..+..+++|++|+++++. .+.. ++.+.. .....+++|++|++++| .++.
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~ 110 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPTA 110 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCCTTT
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCCHHH
Confidence 34555555553222 2344566778889999999999874 2221 111100 00145799999999998 4554
Q ss_pred --cCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcC---------ccccEeecccCccc-ccccCCCCcc
Q 040122 94 --AIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLF---------PRLLSLKLIDLPKL-KRFCNFTGNI 161 (388)
Q Consensus 94 --~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~---------~~L~~L~l~~~~~l-~~~~~~~~~~ 161 (388)
..+. .+.++++|++|++++|.. ...... .+. ..+..+ ++|++|+++++..- ..+......+
T Consensus 111 ~~~l~~-~l~~~~~L~~L~L~~n~l-~~~~~~-~l~----~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 111 QEPLID-FLSKHTPLEHLYLHNNGL-GPQAGA-KIA----RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp HHHHHH-HHHHCTTCCEEECCSSCC-HHHHHH-HHH----HHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred HHHHHH-HHHhCCCCCEEECcCCCC-CHHHHH-HHH----HHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 1222 378899999999999753 211000 000 001223 89999999987532 1221001125
Q ss_pred ccCCCcceEeEecCCCcccc-----cCCcceeeecccCCCccccccCCceEEEec-cc-----ccccccccCCCCcceEE
Q 040122 162 IELPKLEYLIIENCPDMETF-----TSNSTFVLHMTADNKEPQKLKSEENLLVAN-QI-----QHLFDEKVAFPQLGNLR 230 (388)
Q Consensus 162 ~~l~~L~~L~l~~c~~l~~~-----~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~-~~-----~~~~~~~~~~~~L~~L~ 230 (388)
..+++|++|++.+| .++.. ... .+..+++|+.|++++ .. ..++..+..+++|+.|+
T Consensus 184 ~~~~~L~~L~L~~n-~l~~~g~~~l~~~------------~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 184 QSHRLLHTVKMVQN-GIRPEGIEHLLLE------------GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp HHCTTCCEEECCSS-CCCHHHHHHHHHT------------TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred HhCCCcCEEECcCC-CCCHhHHHHHHHH------------HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 57899999999998 55521 111 167899999999998 22 45666778899999999
Q ss_pred ecCCCCcceecccCch-hHhh--hccccEEEEecCCCcc----cccCCc-cccCCCCEEeeccCcCccccc--chhhhcC
Q 040122 231 LSGLHKVQHLWKENDE-SNKA--FANLERLEISECSKLQ----KLVPPS-WHLENLEALKVSKCHELINVL--TLSASKN 300 (388)
Q Consensus 231 l~~~~~l~~~~~~~~~-~~~~--~~~L~~L~i~~~~~~~----~~~~~~-~~~~~L~~L~l~~c~~l~~~~--~~~~~~~ 300 (388)
+++|. ++......++ .+.. +++|++|++++|.... .++..+ .++++|++|++++++ +.... ...+...
T Consensus 251 L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~-l~~~~~~~~~l~~~ 328 (386)
T 2ca6_A 251 LNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR-FSEEDDVVDEIREV 328 (386)
T ss_dssp CTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB-SCTTSHHHHHHHHH
T ss_pred CCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc-CCcchhHHHHHHHH
Confidence 99974 4443111110 1122 7899999999987555 366666 568999999999974 44433 2334455
Q ss_pred ccccceeeEcccc
Q 040122 301 LVNLGRMMIADCK 313 (388)
Q Consensus 301 l~~L~~L~l~~~~ 313 (388)
+++++.+++....
T Consensus 329 l~~~~~~~l~~~d 341 (386)
T 2ca6_A 329 FSTRGRGELDELD 341 (386)
T ss_dssp HHHHTCCEECCCC
T ss_pred hhhcCcchhhhcc
Confidence 6777766665443
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.34 E-value=2.6e-11 Score=106.61 Aligned_cols=177 Identities=19% Similarity=0.166 Sum_probs=117.5
Q ss_pred CCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccCC
Q 040122 78 NNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNF 157 (388)
Q Consensus 78 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 157 (388)
.+.++++++++ .++.+|.. -.+++++|+++++. +..++... +..+++|++|+++++ .+..+ +
T Consensus 14 ~~~~~l~~~~~-~l~~~p~~----~~~~l~~L~L~~n~-l~~~~~~~---------~~~l~~L~~L~L~~n-~l~~~--~ 75 (251)
T 3m19_A 14 EGKKEVDCQGK-SLDSVPSG----IPADTEKLDLQSTG-LATLSDAT---------FRGLTKLTWLNLDYN-QLQTL--S 75 (251)
T ss_dssp GGGTEEECTTC-CCSSCCSC----CCTTCCEEECTTSC-CCCCCTTT---------TTTCTTCCEEECTTS-CCCCC--C
T ss_pred CCCeEEecCCC-CccccCCC----CCCCCCEEEccCCC-cCccCHhH---------hcCcccCCEEECCCC-cCCcc--C
Confidence 45677777766 56664432 22578888888753 33332210 355777888888765 34444 2
Q ss_pred CCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEecccccccccccCCCCcceEEecCCCCc
Q 040122 158 TGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVANQIQHLFDEKVAFPQLGNLRLSGLHKV 237 (388)
Q Consensus 158 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l 237 (388)
...+..+++|++|+++++ .++.++.. .+..+++|+.|+++++ .+
T Consensus 76 ~~~~~~l~~L~~L~L~~n-~l~~~~~~----------------------------------~~~~l~~L~~L~L~~N-~l 119 (251)
T 3m19_A 76 AGVFDDLTELGTLGLANN-QLASLPLG----------------------------------VFDHLTQLDKLYLGGN-QL 119 (251)
T ss_dssp TTTTTTCTTCCEEECTTS-CCCCCCTT----------------------------------TTTTCTTCCEEECCSS-CC
T ss_pred HhHhccCCcCCEEECCCC-cccccChh----------------------------------HhcccCCCCEEEcCCC-cC
Confidence 232456777777777775 45444432 2345678888888874 56
Q ss_pred ceecccCchhHhhhccccEEEEecCCCcccccC-CccccCCCCEEeeccCcCcccccchhhhcCccccceeeEccccc
Q 040122 238 QHLWKENDESNKAFANLERLEISECSKLQKLVP-PSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKM 314 (388)
Q Consensus 238 ~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 314 (388)
+.++...+ ..+++|++|+++++. +..++. .+..+++|++|+++++ .+..++... ...+++|+.|++++|+.
T Consensus 120 ~~~~~~~~---~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 120 KSLPSGVF---DRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGA-FDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCCCTTTT---TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSCCB
T ss_pred CCcChhHh---ccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCC-cCCccCHHH-HhCCCCCCEEEeeCCce
Confidence 66665433 668999999999985 455554 5788999999999986 566665433 36789999999998864
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.34 E-value=9.5e-12 Score=111.95 Aligned_cols=165 Identities=19% Similarity=0.265 Sum_probs=80.6
Q ss_pred cCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccC
Q 040122 77 FNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCN 156 (388)
Q Consensus 77 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 156 (388)
+++|++|++++| .+..++. +..+++|++|++++| .+..++. +..+++|++|+++++. +..+
T Consensus 45 l~~L~~L~l~~~-~i~~~~~---~~~l~~L~~L~L~~n-~l~~~~~-----------l~~l~~L~~L~l~~n~-l~~~-- 105 (291)
T 1h6t_A 45 LNSIDQIIANNS-DIKSVQG---IQYLPNVTKLFLNGN-KLTDIKP-----------LANLKNLGWLFLDENK-VKDL-- 105 (291)
T ss_dssp HHTCCEEECTTS-CCCCCTT---GGGCTTCCEEECCSS-CCCCCGG-----------GTTCTTCCEEECCSSC-CCCG--
T ss_pred cCcccEEEccCC-CcccChh---HhcCCCCCEEEccCC-ccCCCcc-----------cccCCCCCEEECCCCc-CCCC--
Confidence 455555555554 3333222 444555555555553 2222222 1334555555555442 2332
Q ss_pred CCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEec-ccccccccccCCCCcceEEecCCC
Q 040122 157 FTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVAN-QIQHLFDEKVAFPQLGNLRLSGLH 235 (388)
Q Consensus 157 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~~ 235 (388)
..+..+++|++|++++| .++.++ .+..+++|+.|++++ ....+ ..++.+++|+.|+++++
T Consensus 106 --~~l~~l~~L~~L~L~~n-~i~~~~--------------~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N- 166 (291)
T 1h6t_A 106 --SSLKDLKKLKSLSLEHN-GISDIN--------------GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN- 166 (291)
T ss_dssp --GGGTTCTTCCEEECTTS-CCCCCG--------------GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-
T ss_pred --hhhccCCCCCEEECCCC-cCCCCh--------------hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC-
Confidence 11344555555555554 333331 144455555555555 12222 34455666666666664
Q ss_pred CcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccC
Q 040122 236 KVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKC 286 (388)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c 286 (388)
.++.++. ...+++|+.|++++|. +..++ .+..+++|+.|+++++
T Consensus 167 ~l~~~~~-----l~~l~~L~~L~L~~N~-i~~l~-~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 167 QISDIVP-----LAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp CCCCCGG-----GTTCTTCCEEECCSSC-CCBCG-GGTTCTTCSEEEEEEE
T ss_pred ccccchh-----hcCCCccCEEECCCCc-CCCCh-hhccCCCCCEEECcCC
Confidence 3444432 1556667777776663 33343 3566677777777765
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.33 E-value=1.1e-11 Score=111.43 Aligned_cols=166 Identities=22% Similarity=0.362 Sum_probs=98.6
Q ss_pred CCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccc
Q 040122 49 FLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSA 128 (388)
Q Consensus 49 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~ 128 (388)
+++|++|+++++. +.... +. ..+++|++|++++| .++..++ +.++++|++|++++| .+..++.
T Consensus 45 l~~L~~L~l~~~~-i~~~~-~~----~~l~~L~~L~L~~n-~l~~~~~---l~~l~~L~~L~l~~n-~l~~~~~------ 107 (291)
T 1h6t_A 45 LNSIDQIIANNSD-IKSVQ-GI----QYLPNVTKLFLNGN-KLTDIKP---LANLKNLGWLFLDEN-KVKDLSS------ 107 (291)
T ss_dssp HHTCCEEECTTSC-CCCCT-TG----GGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCGGG------
T ss_pred cCcccEEEccCCC-cccCh-hH----hcCCCCCEEEccCC-ccCCCcc---cccCCCCCEEECCCC-cCCCChh------
Confidence 4667777777654 44332 12 45677777777776 4555433 567777777777774 3444332
Q ss_pred cccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEE
Q 040122 129 KEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLL 208 (388)
Q Consensus 129 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~ 208 (388)
+..+++|++|+++++. +..+ ..+..+++|++|++++| .++.++ .+..+++|+.|+
T Consensus 108 -----l~~l~~L~~L~L~~n~-i~~~----~~l~~l~~L~~L~l~~n-~l~~~~--------------~l~~l~~L~~L~ 162 (291)
T 1h6t_A 108 -----LKDLKKLKSLSLEHNG-ISDI----NGLVHLPQLESLYLGNN-KITDIT--------------VLSRLTKLDTLS 162 (291)
T ss_dssp -----GTTCTTCCEEECTTSC-CCCC----GGGGGCTTCCEEECCSS-CCCCCG--------------GGGGCTTCSEEE
T ss_pred -----hccCCCCCEEECCCCc-CCCC----hhhcCCCCCCEEEccCC-cCCcch--------------hhccCCCCCEEE
Confidence 2556777777777653 3443 12556777777777775 444442 156677777777
Q ss_pred Eec-ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCC
Q 040122 209 VAN-QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECS 263 (388)
Q Consensus 209 l~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~ 263 (388)
+++ ....++. +..+++|+.|+++++ .++.++. ...+++|+.|+++++.
T Consensus 163 L~~N~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~~-----l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 163 LEDNQISDIVP-LAGLTKLQNLYLSKN-HISDLRA-----LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCSSCCCCCGG-GTTCTTCCEEECCSS-CCCBCGG-----GTTCTTCSEEEEEEEE
T ss_pred ccCCccccchh-hcCCCccCEEECCCC-cCCCChh-----hccCCCCCEEECcCCc
Confidence 776 2333322 566777777777764 4555432 2556777777777764
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.31 E-value=1.1e-11 Score=104.80 Aligned_cols=148 Identities=15% Similarity=0.165 Sum_probs=72.5
Q ss_pred cCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccC
Q 040122 77 FNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCN 156 (388)
Q Consensus 77 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 156 (388)
+++|++|++++| .+..++. +..+++|++|++++| .+..++. +..+++|++|+++++. +....
T Consensus 43 l~~L~~L~l~~n-~i~~l~~---l~~l~~L~~L~l~~n-~~~~~~~-----------l~~l~~L~~L~l~~n~-l~~~~- 104 (197)
T 4ezg_A 43 MNSLTYITLANI-NVTDLTG---IEYAHNIKDLTINNI-HATNYNP-----------ISGLSNLERLRIMGKD-VTSDK- 104 (197)
T ss_dssp HHTCCEEEEESS-CCSCCTT---GGGCTTCSEEEEESC-CCSCCGG-----------GTTCTTCCEEEEECTT-CBGGG-
T ss_pred cCCccEEeccCC-CccChHH---HhcCCCCCEEEccCC-CCCcchh-----------hhcCCCCCEEEeECCc-cCccc-
Confidence 455555555554 3443221 455555555555554 3333221 2345555555555542 22210
Q ss_pred CCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEecc--cccccccccCCCCcceEEecCC
Q 040122 157 FTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVANQ--IQHLFDEKVAFPQLGNLRLSGL 234 (388)
Q Consensus 157 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~~--~~~~~~~~~~~~~L~~L~l~~~ 234 (388)
+ ..+..+++|++|++++| .++...+. .+..+++|+.|+++++ ...++ .+..+++|+.|+++++
T Consensus 105 ~-~~l~~l~~L~~L~Ls~n-~i~~~~~~------------~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 105 I-PNLSGLTSLTLLDISHS-AHDDSILT------------KINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp S-CCCTTCTTCCEEECCSS-BCBGGGHH------------HHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB
T ss_pred C-hhhcCCCCCCEEEecCC-ccCcHhHH------------HHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC
Confidence 1 11445555555555554 33321111 1445555555555552 22222 4556677777777764
Q ss_pred CCcceecccCchhHhhhccccEEEEecCC
Q 040122 235 HKVQHLWKENDESNKAFANLERLEISECS 263 (388)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~L~~L~i~~~~ 263 (388)
.+++++. ...+++|++|+++++.
T Consensus 170 -~i~~~~~-----l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 170 -GVHDYRG-----IEDFPKLNQLYAFSQT 192 (197)
T ss_dssp -CCCCCTT-----GGGCSSCCEEEECBC-
T ss_pred -CCcChHH-----hccCCCCCEEEeeCcc
Confidence 3454431 1667778888877764
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.30 E-value=1.6e-11 Score=103.75 Aligned_cols=153 Identities=13% Similarity=0.176 Sum_probs=86.3
Q ss_pred hhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcc
Q 040122 100 LRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDME 179 (388)
Q Consensus 100 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 179 (388)
...+++|++|++++| .+..++. +..+++|++|+++++ .+..+ ..+..+++|++|++++| .++
T Consensus 40 ~~~l~~L~~L~l~~n-~i~~l~~-----------l~~l~~L~~L~l~~n-~~~~~----~~l~~l~~L~~L~l~~n-~l~ 101 (197)
T 4ezg_A 40 EAQMNSLTYITLANI-NVTDLTG-----------IEYAHNIKDLTINNI-HATNY----NPISGLSNLERLRIMGK-DVT 101 (197)
T ss_dssp HHHHHTCCEEEEESS-CCSCCTT-----------GGGCTTCSEEEEESC-CCSCC----GGGTTCTTCCEEEEECT-TCB
T ss_pred hhhcCCccEEeccCC-CccChHH-----------HhcCCCCCEEEccCC-CCCcc----hhhhcCCCCCEEEeECC-ccC
Confidence 356677777777774 3444432 244667777777666 33333 12556677777777765 343
Q ss_pred cccCCcceeeecccCCCccccccCCceEEEecccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEE
Q 040122 180 TFTSNSTFVLHMTADNKEPQKLKSEENLLVANQIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEI 259 (388)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i 259 (388)
... +..++.+++|+.|+++++ .++..... ....+++|++|++
T Consensus 102 ~~~----------------------------------~~~l~~l~~L~~L~Ls~n-~i~~~~~~---~l~~l~~L~~L~L 143 (197)
T 4ezg_A 102 SDK----------------------------------IPNLSGLTSLTLLDISHS-AHDDSILT---KINTLPKVNSIDL 143 (197)
T ss_dssp GGG----------------------------------SCCCTTCTTCCEEECCSS-BCBGGGHH---HHTTCSSCCEEEC
T ss_pred ccc----------------------------------ChhhcCCCCCCEEEecCC-ccCcHhHH---HHhhCCCCCEEEc
Confidence 322 222344556666666553 23321111 1245566666766
Q ss_pred ecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEcccc
Q 040122 260 SECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCK 313 (388)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 313 (388)
++|..+..++ .+..+++|++|++++| .+.+++ ....+++|++|++++++
T Consensus 144 ~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~---~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 144 SYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR---GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT---TGGGCSSCCEEEECBC-
T ss_pred cCCCCccccH-hhcCCCCCCEEECCCC-CCcChH---HhccCCCCCEEEeeCcc
Confidence 6665455554 4666777777777775 455543 23567778888887764
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.30 E-value=4.1e-12 Score=125.53 Aligned_cols=167 Identities=19% Similarity=0.259 Sum_probs=107.0
Q ss_pred cccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccc
Q 040122 75 RFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRF 154 (388)
Q Consensus 75 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 154 (388)
..+++|+.|++++| .+..++. +..+++|++|++++| .+..+++ +..+++|+.|+++++. +..+
T Consensus 40 ~~L~~L~~L~l~~n-~i~~l~~---l~~l~~L~~L~Ls~N-~l~~~~~-----------l~~l~~L~~L~Ls~N~-l~~l 102 (605)
T 1m9s_A 40 NELNSIDQIIANNS-DIKSVQG---IQYLPNVTKLFLNGN-KLTDIKP-----------LTNLKNLGWLFLDENK-IKDL 102 (605)
T ss_dssp HHHTTCCCCBCTTC-CCCCCTT---GGGCTTCCEEECTTS-CCCCCGG-----------GGGCTTCCEEECCSSC-CCCC
T ss_pred hcCCCCCEEECcCC-CCCCChH---HccCCCCCEEEeeCC-CCCCChh-----------hccCCCCCEEECcCCC-CCCC
Confidence 35888999999888 5666443 788999999999986 3444443 2568889999998873 4554
Q ss_pred cCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEec-ccccccccccCCCCcceEEecC
Q 040122 155 CNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVAN-QIQHLFDEKVAFPQLGNLRLSG 233 (388)
Q Consensus 155 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~ 233 (388)
..+..+++|++|++++| .+..++. +..+++|+.|++++ ....+ ..++.+++|+.|++++
T Consensus 103 ----~~l~~l~~L~~L~Ls~N-~l~~l~~--------------l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~ 162 (605)
T 1m9s_A 103 ----SSLKDLKKLKSLSLEHN-GISDING--------------LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED 162 (605)
T ss_dssp ----TTSTTCTTCCEEECTTS-CCCCCGG--------------GGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCS
T ss_pred ----hhhccCCCCCEEEecCC-CCCCCcc--------------ccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcC
Confidence 12668889999999887 4554421 56677777777776 22222 4455666677777766
Q ss_pred CCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccC
Q 040122 234 LHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKC 286 (388)
Q Consensus 234 ~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c 286 (388)
+ .+..+++ ...+++|+.|++++|. +..++ .+..+++|+.|+++++
T Consensus 163 N-~l~~~~~-----l~~l~~L~~L~Ls~N~-i~~l~-~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 163 N-QISDIVP-----LAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELFSQ 207 (605)
T ss_dssp S-CCCCCGG-----GTTCTTCCEEECCSSC-CCBCG-GGTTCTTCSEEECCSE
T ss_pred C-cCCCchh-----hccCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEccCC
Confidence 4 3444332 1555666666666653 23332 3555666666666654
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.29 E-value=1.2e-11 Score=122.21 Aligned_cols=170 Identities=22% Similarity=0.358 Sum_probs=123.2
Q ss_pred CCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceeccccccc
Q 040122 48 GFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELS 127 (388)
Q Consensus 48 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~ 127 (388)
.+++|+.|+++++. +..++ .. ..+++|+.|+|++| .+..+++ +..+++|++|++++| .+..++.
T Consensus 41 ~L~~L~~L~l~~n~-i~~l~-~l----~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~l~~l~~----- 104 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKSVQ-GI----QYLPNVTKLFLNGN-KLTDIKP---LTNLKNLGWLFLDEN-KIKDLSS----- 104 (605)
T ss_dssp HHTTCCCCBCTTCC-CCCCT-TG----GGCTTCCEEECTTS-CCCCCGG---GGGCTTCCEEECCSS-CCCCCTT-----
T ss_pred cCCCCCEEECcCCC-CCCCh-HH----ccCCCCCEEEeeCC-CCCCChh---hccCCCCCEEECcCC-CCCCChh-----
Confidence 45778888888765 55433 22 56899999999988 6666554 788999999999986 4555442
Q ss_pred ccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceE
Q 040122 128 AKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENL 207 (388)
Q Consensus 128 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L 207 (388)
+..+++|+.|+++++. +..+ ..+..+++|+.|++++| .++.++ .+..+++|+.|
T Consensus 105 ------l~~l~~L~~L~Ls~N~-l~~l----~~l~~l~~L~~L~Ls~N-~l~~l~--------------~l~~l~~L~~L 158 (605)
T 1m9s_A 105 ------LKDLKKLKSLSLEHNG-ISDI----NGLVHLPQLESLYLGNN-KITDIT--------------VLSRLTKLDTL 158 (605)
T ss_dssp ------STTCTTCCEEECTTSC-CCCC----GGGGGCTTCSEEECCSS-CCCCCG--------------GGGSCTTCSEE
T ss_pred ------hccCCCCCEEEecCCC-CCCC----ccccCCCccCEEECCCC-ccCCch--------------hhcccCCCCEE
Confidence 3668899999998874 4444 22678899999999987 565552 17788999999
Q ss_pred EEec-ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcc
Q 040122 208 LVAN-QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQ 266 (388)
Q Consensus 208 ~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~ 266 (388)
++++ ....++. +..+++|+.|+++++ .+..++. +..+++|+.|++++|....
T Consensus 159 ~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~i~~l~~-----l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 159 SLEDNQISDIVP-LAGLTKLQNLYLSKN-HISDLRA-----LAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp ECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCBCGG-----GTTCTTCSEEECCSEEEEC
T ss_pred ECcCCcCCCchh-hccCCCCCEEECcCC-CCCCChH-----HccCCCCCEEEccCCcCcC
Confidence 9988 3333333 778899999999886 4666532 2778899999999876443
No 101
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.29 E-value=8.8e-13 Score=122.62 Aligned_cols=122 Identities=12% Similarity=-0.032 Sum_probs=64.8
Q ss_pred hccCCCCcceEEecCccccceecccc-ccCccccC-CccEEEecCCCCCcccCChhhhhcC-----CCCcEEEecccccc
Q 040122 45 EKIGFLDINRLQLSHFPRLQEIWHGQ-ALPVRFFN-NLAELVVDDSTNMSSAIPANLLRCL-----NNLEWLAVRNCDSL 117 (388)
Q Consensus 45 ~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~l-----~~L~~L~l~~~~~l 117 (388)
.....++|++|+++++. +....... .-....++ +|++|++++| .++...+.. +..+ ++|++|++++|. +
T Consensus 17 ~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~-l~~~l~~~~~~L~~L~Ls~n~-l 92 (362)
T 3goz_A 17 FTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDE-LVQILAAIPANVTSLNLSGNF-L 92 (362)
T ss_dssp HHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHH-HHHHHHTSCTTCCEEECCSSC-G
T ss_pred HHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHH-HHHHHhccCCCccEEECcCCc-C
Confidence 33444558888888776 55433200 00013456 7888888887 566533332 3443 888888888864 3
Q ss_pred ceecccccccccccccCCcC-ccccEeecccCcccccccCCCCc----ccc-CCCcceEeEecCCCcc
Q 040122 118 EEVLHLEELSAKEEHIGPLF-PRLLSLKLIDLPKLKRFCNFTGN----IIE-LPKLEYLIIENCPDME 179 (388)
Q Consensus 118 ~~i~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~----~~~-l~~L~~L~l~~c~~l~ 179 (388)
...+...-. ..+..+ ++|++|+++++. ++.. +... +.. .++|++|++++| .++
T Consensus 93 ~~~~~~~l~-----~~l~~~~~~L~~L~Ls~N~-l~~~--~~~~l~~~l~~~~~~L~~L~Ls~N-~l~ 151 (362)
T 3goz_A 93 SYKSSDELV-----KTLAAIPFTITVLDLGWND-FSSK--SSSEFKQAFSNLPASITSLNLRGN-DLG 151 (362)
T ss_dssp GGSCHHHHH-----HHHHTSCTTCCEEECCSSC-GGGS--CHHHHHHHHTTSCTTCCEEECTTS-CGG
T ss_pred ChHHHHHHH-----HHHHhCCCCccEEECcCCc-CCcH--HHHHHHHHHHhCCCceeEEEccCC-cCC
Confidence 321110000 001223 678888887764 3333 1111 122 357888888876 444
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.25 E-value=4.6e-11 Score=101.83 Aligned_cols=160 Identities=14% Similarity=0.077 Sum_probs=70.6
Q ss_pred cCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccC
Q 040122 77 FNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCN 156 (388)
Q Consensus 77 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 156 (388)
.++|++|++++| .++.+++ ..+..+++|++|++++| .+..++.. .+..+++|++|+++++. ++.+
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~---------~~~~l~~L~~L~Ls~n~-l~~~-- 91 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLPN-GVFDELTSLTQLYLGGN-KLQSLPNG---------VFNKLTSLTYLNLSTNQ-LQSL-- 91 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSS-CCCCCCTT---------TTTTCTTCCEEECCSSC-CCCC--
T ss_pred CCCCcEEEcCCC-ccCcCCh-hhhcccccCcEEECCCC-ccCccChh---------hcCCCCCcCEEECCCCc-CCcc--
Confidence 345555555555 3443222 22445555555555553 23332221 02335555555555442 3333
Q ss_pred CCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEec-ccccccc-cccCCCCcceEEecCC
Q 040122 157 FTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVAN-QIQHLFD-EKVAFPQLGNLRLSGL 234 (388)
Q Consensus 157 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~-~~~~~~~-~~~~~~~L~~L~l~~~ 234 (388)
+...+..+++|++|+++++ .++.++... +..+++|+.|++++ ....++. .+..+++|+.|+++++
T Consensus 92 ~~~~~~~l~~L~~L~L~~N-~l~~~~~~~------------~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 92 PNGVFDKLTQLKELALNTN-QLQSLPDGV------------FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCCCCCTTT------------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CHhHhcCccCCCEEEcCCC-cCcccCHhH------------hccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 1121344555555555554 344333321 33444444444443 1122222 1344556666666654
Q ss_pred CCcceecccCchhHhhhccccEEEEecCCCcccccCCcccc
Q 040122 235 HKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHL 275 (388)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~ 275 (388)
+.. ..++.|+.|.++.+...+.+|..++.+
T Consensus 159 ~~~-----------~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 159 PWD-----------CTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp CBC-----------CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred Cee-----------cCCCCHHHHHHHHHhCCceeeccCccc
Confidence 211 223455555555555555555544443
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.14 E-value=5.2e-10 Score=95.25 Aligned_cols=173 Identities=14% Similarity=0.073 Sum_probs=94.3
Q ss_pred cEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccCCCCc
Q 040122 81 AELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGN 160 (388)
Q Consensus 81 ~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 160 (388)
+.++.+++ .++.++. ...++|++|+++++ .+..++.. .+..+++|++|+++++ .++.+ +...
T Consensus 10 ~~v~c~~~-~l~~~p~----~~~~~l~~L~l~~n-~l~~~~~~---------~~~~l~~L~~L~l~~n-~l~~~--~~~~ 71 (208)
T 2o6s_A 10 TTVECYSQ-GRTSVPT----GIPAQTTYLDLETN-SLKSLPNG---------VFDELTSLTQLYLGGN-KLQSL--PNGV 71 (208)
T ss_dssp TEEECCSS-CCSSCCS----CCCTTCSEEECCSS-CCCCCCTT---------TTTTCTTCSEEECCSS-CCCCC--CTTT
T ss_pred CEEEecCC-CccCCCC----CCCCCCcEEEcCCC-ccCcCChh---------hhcccccCcEEECCCC-ccCcc--Chhh
Confidence 45555554 4455332 33467888888775 34443321 0245677777777765 34444 2222
Q ss_pred cccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEecccccccccccCCCCcceEEecCCCCccee
Q 040122 161 IIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVANQIQHLFDEKVAFPQLGNLRLSGLHKVQHL 240 (388)
Q Consensus 161 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 240 (388)
+..+++|++|+++++ .++.++... ++.+++|+.|+++++ .++.+
T Consensus 72 ~~~l~~L~~L~Ls~n-~l~~~~~~~----------------------------------~~~l~~L~~L~L~~N-~l~~~ 115 (208)
T 2o6s_A 72 FNKLTSLTYLNLSTN-QLQSLPNGV----------------------------------FDKLTQLKELALNTN-QLQSL 115 (208)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTT----------------------------------TTTCTTCCEEECCSS-CCCCC
T ss_pred cCCCCCcCEEECCCC-cCCccCHhH----------------------------------hcCccCCCEEEcCCC-cCccc
Confidence 456677777777775 444443321 234455666666553 34444
Q ss_pred cccCchhHhhhccccEEEEecCCCcccccC-CccccCCCCEEeeccCcCcccccchhhhcCccccceeeEccccccchhh
Q 040122 241 WKENDESNKAFANLERLEISECSKLQKLVP-PSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQII 319 (388)
Q Consensus 241 ~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 319 (388)
+...+ ..+++|++|+++++.. ..++. .+..+++|++|++++++ +...+++|++|+++.+.....++
T Consensus 116 ~~~~~---~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~---------~~~~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 116 PDGVF---DKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNP---------WDCTCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp CTTTT---TTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSCC---------BCCCTTTTHHHHHHHHHCTTTBB
T ss_pred CHhHh---ccCCcCCEEECCCCcc-ceeCHHHhccCCCccEEEecCCC---------eecCCCCHHHHHHHHHhCCceee
Confidence 43221 4456667777766543 33333 35667777777777752 12445677777777665544444
Q ss_pred c
Q 040122 320 Q 320 (388)
Q Consensus 320 ~ 320 (388)
.
T Consensus 183 ~ 183 (208)
T 2o6s_A 183 N 183 (208)
T ss_dssp C
T ss_pred c
Confidence 3
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.14 E-value=5.7e-12 Score=117.10 Aligned_cols=248 Identities=12% Similarity=0.020 Sum_probs=148.6
Q ss_pred ccCCccEEEecCCCCCcccCCh---hhhhcCC-CCcEEEeccccccceecc--cccccccccccCCc-CccccEeecccC
Q 040122 76 FFNNLAELVVDDSTNMSSAIPA---NLLRCLN-NLEWLAVRNCDSLEEVLH--LEELSAKEEHIGPL-FPRLLSLKLIDL 148 (388)
Q Consensus 76 ~~~~L~~L~l~~~~~l~~~~~~---~~~~~l~-~L~~L~l~~~~~l~~i~~--~~~~~~~~~~~~~~-~~~L~~L~l~~~ 148 (388)
..++|++|++++| .++...+. ..+.+++ +|++|++++|. +..... .... ... +++|++|+++++
T Consensus 20 ~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~-------l~~~~~~L~~L~Ls~n 90 (362)
T 3goz_A 20 IPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQI-------LAAIPANVTSLNLSGN 90 (362)
T ss_dssp SCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHH-------HHTSCTTCCEEECCSS
T ss_pred CCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHH-------HhccCCCccEEECcCC
Confidence 4566999999999 57764431 3377888 99999999974 333211 1000 111 389999999988
Q ss_pred cccccccCC--CCccccC-CCcceEeEecCCCcccccCCcceeeecccCCCcccc-ccCCceEEEec-ccc-----cccc
Q 040122 149 PKLKRFCNF--TGNIIEL-PKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQK-LKSEENLLVAN-QIQ-----HLFD 218 (388)
Q Consensus 149 ~~l~~~~~~--~~~~~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~-l~~L~~L~l~~-~~~-----~~~~ 218 (388)
. ++..... ...+..+ ++|++|++++| .++..+.... ...+.. .++|+.|++++ ... .+..
T Consensus 91 ~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l--------~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 91 F-LSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEF--------KQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp C-GGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHH--------HHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred c-CChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHH--------HHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 5 4433100 0012344 89999999998 4665543321 000222 36999999998 222 3334
Q ss_pred cccCCC-CcceEEecCCCCcceecccCch-hHhhh-ccccEEEEecCCCcc----cccCCccc-cCCCCEEeeccCcCcc
Q 040122 219 EKVAFP-QLGNLRLSGLHKVQHLWKENDE-SNKAF-ANLERLEISECSKLQ----KLVPPSWH-LENLEALKVSKCHELI 290 (388)
Q Consensus 219 ~~~~~~-~L~~L~l~~~~~l~~~~~~~~~-~~~~~-~~L~~L~i~~~~~~~----~~~~~~~~-~~~L~~L~l~~c~~l~ 290 (388)
.+..++ +|++|+++++ .++......+. ....+ ++|++|++++|..-. .++..+.. .++|++|+++++ .+.
T Consensus 161 ~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~ 238 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLH 238 (362)
T ss_dssp HHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCC
T ss_pred HHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCC
Confidence 444555 9999999996 45544322111 11334 599999999986333 14444444 359999999987 566
Q ss_pred cccch---hhhcCccccceeeEccccccchhhcccccccCCccccccccceEecccCC
Q 040122 291 NVLTL---SASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLP 345 (388)
Q Consensus 291 ~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 345 (388)
+.... .....+++|+.|++++|.. ..+.......-......+++|+.|++++++
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l-~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIV-KNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHH-TTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCc-cccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 65432 2346788999999999861 111100000000012346788999998864
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.14 E-value=9.6e-11 Score=103.73 Aligned_cols=103 Identities=17% Similarity=0.239 Sum_probs=55.2
Q ss_pred CCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccc
Q 040122 49 FLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSA 128 (388)
Q Consensus 49 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~ 128 (388)
+.++..++++++. +.++. .. ..+++|++|++++| .++.++. +..+++|++|++++| .+..++.
T Consensus 18 l~~l~~l~l~~~~-i~~~~-~~----~~l~~L~~L~l~~n-~i~~l~~---l~~l~~L~~L~L~~N-~i~~~~~------ 80 (263)
T 1xeu_A 18 LANAVKQNLGKQS-VTDLV-SQ----KELSGVQNFNGDNS-NIQSLAG---MQFFTNLKELHLSHN-QISDLSP------ 80 (263)
T ss_dssp HHHHHHHHHTCSC-TTSEE-CH----HHHTTCSEEECTTS-CCCCCTT---GGGCTTCCEEECCSS-CCCCCGG------
T ss_pred HHHHHHHHhcCCC-ccccc-ch----hhcCcCcEEECcCC-CcccchH---HhhCCCCCEEECCCC-ccCCChh------
Confidence 3445555555443 44332 11 34677777777776 5555332 566777777777764 3444433
Q ss_pred cccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCccc
Q 040122 129 KEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMET 180 (388)
Q Consensus 129 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 180 (388)
+..+++|+.|+++++ .++.+. . ... ++|++|++++| .++.
T Consensus 81 -----l~~l~~L~~L~L~~N-~l~~l~--~--~~~-~~L~~L~L~~N-~l~~ 120 (263)
T 1xeu_A 81 -----LKDLTKLEELSVNRN-RLKNLN--G--IPS-ACLSRLFLDNN-ELRD 120 (263)
T ss_dssp -----GTTCSSCCEEECCSS-CCSCCT--T--CCC-SSCCEEECCSS-CCSB
T ss_pred -----hccCCCCCEEECCCC-ccCCcC--c--ccc-CcccEEEccCC-ccCC
Confidence 144666777777665 234431 1 122 66666666665 3443
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.13 E-value=7.5e-10 Score=108.31 Aligned_cols=179 Identities=17% Similarity=0.125 Sum_probs=107.2
Q ss_pred CCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceeccccccccc
Q 040122 50 LDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAK 129 (388)
Q Consensus 50 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~ 129 (388)
.+|+.|+++++. +..++... +++|++|++++| .++.++ ..+++|++|++++| .+..+|..
T Consensus 59 ~~L~~L~Ls~n~-L~~lp~~l------~~~L~~L~Ls~N-~l~~ip-----~~l~~L~~L~Ls~N-~l~~ip~l------ 118 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSSLPDNL------PPQITVLEITQN-ALISLP-----ELPASLEYLDACDN-RLSTLPEL------ 118 (571)
T ss_dssp TTCSEEECCSSC-CSCCCSCC------CTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSCCCCC------
T ss_pred CCccEEEeCCCC-CCccCHhH------cCCCCEEECcCC-CCcccc-----cccCCCCEEEccCC-CCCCcchh------
Confidence 478899998775 65433322 578999999888 566643 34688999999886 45555441
Q ss_pred ccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEE
Q 040122 130 EEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLV 209 (388)
Q Consensus 130 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l 209 (388)
..+|++|+++++. ++.+ +. .+++|++|+++++ .++.++. .+++|+.|++
T Consensus 119 -------~~~L~~L~Ls~N~-l~~l--p~----~l~~L~~L~Ls~N-~l~~lp~----------------~l~~L~~L~L 167 (571)
T 3cvr_A 119 -------PASLKHLDVDNNQ-LTML--PE----LPALLEYINADNN-QLTMLPE----------------LPTSLEVLSV 167 (571)
T ss_dssp -------CTTCCEEECCSSC-CSCC--CC----CCTTCCEEECCSS-CCSCCCC----------------CCTTCCEEEC
T ss_pred -------hcCCCEEECCCCc-CCCC--CC----cCccccEEeCCCC-ccCcCCC----------------cCCCcCEEEC
Confidence 2288889988763 5555 21 5788889988886 4655442 2566777777
Q ss_pred ec-ccccccccccCCCCcceEEecCCCCcceecccCchh--HhhhccccEEEEecCCCcccccCCccccCCCCEEeeccC
Q 040122 210 AN-QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDES--NKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKC 286 (388)
Q Consensus 210 ~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c 286 (388)
++ ....++. +. ++|+.|+++++ .++.++. +.. ....+.|+.|++++| .+..+|..+..+++|+.|+++++
T Consensus 168 s~N~L~~lp~-l~--~~L~~L~Ls~N-~L~~lp~--~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 168 RNNQLTFLPE-LP--ESLEALDVSTN-LLESLPA--VPVRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp CSSCCSCCCC-CC--TTCCEEECCSS-CCSSCCC--CC--------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSS
T ss_pred CCCCCCCcch-hh--CCCCEEECcCC-CCCchhh--HHHhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCC
Confidence 66 3333333 32 66777777664 4555443 110 001112266666665 34455555555666666666654
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.10 E-value=1.2e-09 Score=93.97 Aligned_cols=89 Identities=12% Similarity=0.117 Sum_probs=43.6
Q ss_pred CCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccCC
Q 040122 78 NNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNF 157 (388)
Q Consensus 78 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 157 (388)
+.+++|++++| .++.+++...+.++++|++|++++| .+..++... +..+++|++|+++++. +..+ +
T Consensus 32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~---------~~~l~~L~~L~Ls~N~-l~~~--~ 97 (220)
T 2v70_A 32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGA---------FEGASGVNEILLTSNR-LENV--Q 97 (220)
T ss_dssp TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTT---------TTTCTTCCEEECCSSC-CCCC--C
T ss_pred CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHHH---------hCCCCCCCEEECCCCc-cCcc--C
Confidence 34556666655 4444433333556666666666653 344432210 2445566666665542 3333 2
Q ss_pred CCccccCCCcceEeEecCCCcccc
Q 040122 158 TGNIIELPKLEYLIIENCPDMETF 181 (388)
Q Consensus 158 ~~~~~~l~~L~~L~l~~c~~l~~~ 181 (388)
...+..+++|++|+++++ .++.+
T Consensus 98 ~~~~~~l~~L~~L~Ls~N-~l~~~ 120 (220)
T 2v70_A 98 HKMFKGLESLKTLMLRSN-RITCV 120 (220)
T ss_dssp GGGGTTCSSCCEEECTTS-CCCCB
T ss_pred HhHhcCCcCCCEEECCCC-cCCeE
Confidence 222445566666666664 34444
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.09 E-value=1.4e-09 Score=106.36 Aligned_cols=181 Identities=19% Similarity=0.159 Sum_probs=128.0
Q ss_pred CCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccCC
Q 040122 78 NNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNF 157 (388)
Q Consensus 78 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 157 (388)
.+++.|++++| .++.+++ . + +++|++|++++| .+..+| ..+++|+.|+++++ .++.++.
T Consensus 59 ~~L~~L~Ls~n-~L~~lp~-~-l--~~~L~~L~Ls~N-~l~~ip-------------~~l~~L~~L~Ls~N-~l~~ip~- 117 (571)
T 3cvr_A 59 NQFSELQLNRL-NLSSLPD-N-L--PPQITVLEITQN-ALISLP-------------ELPASLEYLDACDN-RLSTLPE- 117 (571)
T ss_dssp TTCSEEECCSS-CCSCCCS-C-C--CTTCSEEECCSS-CCSCCC-------------CCCTTCCEEECCSS-CCSCCCC-
T ss_pred CCccEEEeCCC-CCCccCH-h-H--cCCCCEEECcCC-CCcccc-------------cccCCCCEEEccCC-CCCCcch-
Confidence 48999999988 6777443 2 2 478999999996 455664 22789999999987 4555522
Q ss_pred CCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEec-ccccccccccCCCCcceEEecCCCC
Q 040122 158 TGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVAN-QIQHLFDEKVAFPQLGNLRLSGLHK 236 (388)
Q Consensus 158 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~ 236 (388)
+.. +|++|+++++ .++.++. .+++|+.|++++ ....++. .+++|+.|+++++ .
T Consensus 118 ---l~~--~L~~L~Ls~N-~l~~lp~----------------~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~ 171 (571)
T 3cvr_A 118 ---LPA--SLKHLDVDNN-QLTMLPE----------------LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN-Q 171 (571)
T ss_dssp ---CCT--TCCEEECCSS-CCSCCCC----------------CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-C
T ss_pred ---hhc--CCCEEECCCC-cCCCCCC----------------cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC-C
Confidence 222 9999999997 5666553 378899999988 3334443 5689999999985 5
Q ss_pred cceecccCchhHhhhccccEEEEecCCCcccccCCccccCCC-------CEEeeccCcCcccccchhhhcCccccceeeE
Q 040122 237 VQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENL-------EALKVSKCHELINVLTLSASKNLVNLGRMMI 309 (388)
Q Consensus 237 l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L-------~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l 309 (388)
++.++. + . ++|+.|++++|. ++.+|. +.. +| +.|+++++ .++.++.. + .++++|+.|++
T Consensus 172 L~~lp~--l---~--~~L~~L~Ls~N~-L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~-l-~~l~~L~~L~L 237 (571)
T 3cvr_A 172 LTFLPE--L---P--ESLEALDVSTNL-LESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPEN-I-LSLDPTCTIIL 237 (571)
T ss_dssp CSCCCC--C---C--TTCCEEECCSSC-CSSCCC-CC----------CCEEEECCSS-CCCCCCGG-G-GGSCTTEEEEC
T ss_pred CCCcch--h---h--CCCCEEECcCCC-CCchhh-HHH--hhhcccccceEEecCCC-cceecCHH-H-hcCCCCCEEEe
Confidence 666664 2 2 789999999874 557766 443 77 99999886 67766543 2 45889999999
Q ss_pred ccccccchhh
Q 040122 310 ADCKMIEQII 319 (388)
Q Consensus 310 ~~~~~~~~~~ 319 (388)
++|+....++
T Consensus 238 ~~N~l~~~~p 247 (571)
T 3cvr_A 238 EDNPLSSRIR 247 (571)
T ss_dssp CSSSCCHHHH
T ss_pred eCCcCCCcCH
Confidence 9887655443
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.09 E-value=5.3e-10 Score=98.90 Aligned_cols=143 Identities=24% Similarity=0.320 Sum_probs=98.1
Q ss_pred cCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccc
Q 040122 47 IGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEEL 126 (388)
Q Consensus 47 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~ 126 (388)
..+++|++|+++++. +..++ +. ..+++|++|++++| .++..++ +.++++|++|++++| .+..++..
T Consensus 38 ~~l~~L~~L~l~~n~-i~~l~-~l----~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N-~l~~l~~~--- 103 (263)
T 1xeu_A 38 KELSGVQNFNGDNSN-IQSLA-GM----QFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRN-RLKNLNGI--- 103 (263)
T ss_dssp HHHTTCSEEECTTSC-CCCCT-TG----GGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSS-CCSCCTTC---
T ss_pred hhcCcCcEEECcCCC-cccch-HH----hhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCC-ccCCcCcc---
Confidence 456899999999875 66544 23 56899999999998 6777555 789999999999996 45555442
Q ss_pred cccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCce
Q 040122 127 SAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEEN 206 (388)
Q Consensus 127 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~ 206 (388)
.. ++|+.|+++++ .++.+ ..+..+++|++|+++++ .++.++. ++.+++|+.
T Consensus 104 --------~~-~~L~~L~L~~N-~l~~~----~~l~~l~~L~~L~Ls~N-~i~~~~~--------------l~~l~~L~~ 154 (263)
T 1xeu_A 104 --------PS-ACLSRLFLDNN-ELRDT----DSLIHLKNLEILSIRNN-KLKSIVM--------------LGFLSKLEV 154 (263)
T ss_dssp --------CC-SSCCEEECCSS-CCSBS----GGGTTCTTCCEEECTTS-CCCBCGG--------------GGGCTTCCE
T ss_pred --------cc-CcccEEEccCC-ccCCC----hhhcCcccccEEECCCC-cCCCChH--------------HccCCCCCE
Confidence 22 89999999987 45555 22678999999999997 5665531 455566666
Q ss_pred EEEec-ccccccccccCCCCcceEEecC
Q 040122 207 LLVAN-QIQHLFDEKVAFPQLGNLRLSG 233 (388)
Q Consensus 207 L~l~~-~~~~~~~~~~~~~~L~~L~l~~ 233 (388)
|++++ ..... ..+..+++|+.|++++
T Consensus 155 L~L~~N~i~~~-~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 155 LDLHGNEITNT-GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp EECTTSCCCBC-TTSTTCCCCCEEEEEE
T ss_pred EECCCCcCcch-HHhccCCCCCEEeCCC
Confidence 65555 11111 3334444444444444
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.06 E-value=9.6e-10 Score=101.96 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=61.8
Q ss_pred CCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceeccccccccc
Q 040122 50 LDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAK 129 (388)
Q Consensus 50 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~ 129 (388)
+.++.|+++++. +..++... .. ..+++|++|++++| .+..+++.. +.++++|++|++++| .+..++...
T Consensus 39 ~~l~~L~Ls~N~-l~~l~~~~-~~-~~l~~L~~L~L~~N-~i~~i~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~----- 107 (361)
T 2xot_A 39 SYTALLDLSHNN-LSRLRAEW-TP-TRLTNLHSLLLSHN-HLNFISSEA-FVPVPNLRYLDLSSN-HLHTLDEFL----- 107 (361)
T ss_dssp TTCSEEECCSSC-CCEECTTS-SS-SCCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCCEECTTT-----
T ss_pred CCCCEEECCCCC-CCccChhh-hh-hcccccCEEECCCC-cCCccChhh-ccCCCCCCEEECCCC-cCCcCCHHH-----
Confidence 456677776654 55443332 10 14666777777666 555544332 566677777777664 344443211
Q ss_pred ccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccC
Q 040122 130 EEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTS 183 (388)
Q Consensus 130 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 183 (388)
+..+++|+.|+++++. +..+ ....+..+++|++|+++++ .++.++.
T Consensus 108 ----~~~l~~L~~L~L~~N~-i~~~--~~~~~~~l~~L~~L~L~~N-~l~~l~~ 153 (361)
T 2xot_A 108 ----FSDLQALEVLLLYNNH-IVVV--DRNAFEDMAQLQKLYLSQN-QISRFPV 153 (361)
T ss_dssp ----TTTCTTCCEEECCSSC-CCEE--CTTTTTTCTTCCEEECCSS-CCCSCCG
T ss_pred ----hCCCcCCCEEECCCCc-ccEE--CHHHhCCcccCCEEECCCC-cCCeeCH
Confidence 3456666677766553 3333 2222456666666666664 4554443
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.05 E-value=2.6e-09 Score=91.75 Aligned_cols=34 Identities=12% Similarity=0.325 Sum_probs=14.4
Q ss_pred CCccEEEecCCCCCcccCChhhhhcCCCCcEEEecc
Q 040122 78 NNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRN 113 (388)
Q Consensus 78 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 113 (388)
++++.|++++| .++.+++.. +..+++|++|++++
T Consensus 32 ~~l~~L~l~~n-~i~~i~~~~-~~~l~~L~~L~Ls~ 65 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPPGA-FSPYKKLRRIDLSN 65 (220)
T ss_dssp TTCCEEECCSS-CCCEECTTS-STTCTTCCEEECCS
T ss_pred cCCCEEECCCC-cCCCcCHhH-hhCCCCCCEEECCC
Confidence 34444444444 333322211 44444444444444
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.04 E-value=2.6e-09 Score=92.39 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=15.9
Q ss_pred CCccEEEecCCCCCcccCChhhhhcCCCCcEEEecc
Q 040122 78 NNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRN 113 (388)
Q Consensus 78 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 113 (388)
++|++|++++| .+..+.+.. +.++++|++|++++
T Consensus 40 ~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~L~~ 73 (229)
T 3e6j_A 40 TNAQILYLHDN-QITKLEPGV-FDSLINLKELYLGS 73 (229)
T ss_dssp TTCSEEECCSS-CCCCCCTTT-TTTCTTCCEEECCS
T ss_pred CCCCEEEcCCC-ccCccCHHH-hhCccCCcEEECCC
Confidence 45555555554 333332222 44455555555555
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.03 E-value=3.7e-09 Score=91.45 Aligned_cols=60 Identities=12% Similarity=0.119 Sum_probs=26.1
Q ss_pred ccccCCceEEEec-ccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecC
Q 040122 199 QKLKSEENLLVAN-QIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISEC 262 (388)
Q Consensus 199 ~~l~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~ 262 (388)
..+++|+.|++++ ....++..+..+++|+.|+++++ .++.++...+ ..+++|+.|++.++
T Consensus 109 ~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 109 DRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAF---DRLSSLTHAYLFGN 169 (229)
T ss_dssp TTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTT---TTCTTCCEEECTTS
T ss_pred CcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHH---hCCCCCCEEEeeCC
Confidence 3444444444444 23333444444455555555442 3343332211 33445555555444
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.02 E-value=1.1e-09 Score=89.85 Aligned_cols=113 Identities=22% Similarity=0.196 Sum_probs=64.0
Q ss_pred cCCCCcceEEecCccccc--eeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccc
Q 040122 47 IGFLDINRLQLSHFPRLQ--EIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLE 124 (388)
Q Consensus 47 ~~~~~L~~L~l~~~~~l~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~ 124 (388)
..+++|++|+++++. +. .++... ..+++|++|++++| .++.. . .+..+++|++|++++|.....++..
T Consensus 21 ~~~~~L~~L~l~~n~-l~~~~i~~~~----~~l~~L~~L~l~~n-~l~~~-~--~~~~l~~L~~L~Ls~N~l~~~~~~~- 90 (168)
T 2ell_A 21 RTPAAVRELVLDNCK-SNDGKIEGLT----AEFVNLEFLSLINV-GLISV-S--NLPKLPKLKKLELSENRIFGGLDML- 90 (168)
T ss_dssp SCTTSCSEEECCSCB-CBTTBCSSCC----GGGGGCCEEEEESS-CCCCC-S--SCCCCSSCCEEEEESCCCCSCCCHH-
T ss_pred CCcccCCEEECCCCC-CChhhHHHHH----HhCCCCCEEeCcCC-CCCCh-h--hhccCCCCCEEECcCCcCchHHHHH-
Confidence 345777788877765 44 332222 45677777777777 45554 2 2667777777777775422223322
Q ss_pred cccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccc
Q 040122 125 ELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETF 181 (388)
Q Consensus 125 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 181 (388)
...+++|++|+++++ .++.+..... +..+++|++|++++| .++..
T Consensus 91 ---------~~~l~~L~~L~Ls~N-~l~~~~~~~~-l~~l~~L~~L~l~~N-~l~~~ 135 (168)
T 2ell_A 91 ---------AEKLPNLTHLNLSGN-KLKDISTLEP-LKKLECLKSLDLFNC-EVTNL 135 (168)
T ss_dssp ---------HHHCTTCCEEECBSS-SCCSSGGGGG-GSSCSCCCEEECCSS-GGGTS
T ss_pred ---------HhhCCCCCEEeccCC-ccCcchhHHH-HhcCCCCCEEEeeCC-cCcch
Confidence 233667777777665 3444321112 556667777777665 34433
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.01 E-value=4.3e-09 Score=90.40 Aligned_cols=148 Identities=11% Similarity=0.119 Sum_probs=75.2
Q ss_pred CcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCc
Q 040122 106 LEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNS 185 (388)
Q Consensus 106 L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 185 (388)
-+++++++ ..++.+|.. ....++.|+++++. +..+... ..+..+++|++|++.++ .++.++...
T Consensus 13 ~~~l~~s~-n~l~~iP~~------------~~~~~~~L~L~~N~-l~~~~~~-~~~~~l~~L~~L~L~~N-~i~~i~~~~ 76 (220)
T 2v70_A 13 GTTVDCSN-QKLNKIPEH------------IPQYTAELRLNNNE-FTVLEAT-GIFKKLPQLRKINFSNN-KITDIEEGA 76 (220)
T ss_dssp TTEEECCS-SCCSSCCSC------------CCTTCSEEECCSSC-CCEECCC-CCGGGCTTCCEEECCSS-CCCEECTTT
T ss_pred CCEeEeCC-CCcccCccC------------CCCCCCEEEcCCCc-CCccCch-hhhccCCCCCEEECCCC-cCCEECHHH
Confidence 35777777 345555432 24456778887653 4444211 22557788888888775 566655432
Q ss_pred ceeeecccCCCccccccCCceEEEec-cccccc-ccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCC
Q 040122 186 TFVLHMTADNKEPQKLKSEENLLVAN-QIQHLF-DEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECS 263 (388)
Q Consensus 186 ~~~~~l~~~~~~l~~l~~L~~L~l~~-~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~ 263 (388)
+..+++|+.|++++ ....++ ..++.+++|++|+++++ .++.+....+ ..+++|++|+++++.
T Consensus 77 ------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~N~ 140 (220)
T 2v70_A 77 ------------FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSF---IGLSSVRLLSLYDNQ 140 (220)
T ss_dssp ------------TTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSS---TTCTTCSEEECTTSC
T ss_pred ------------hCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHc---CCCccCCEEECCCCc
Confidence 55566666666655 222222 22444555555555553 3443332222 334455555555543
Q ss_pred CcccccCCccccCCCCEEeecc
Q 040122 264 KLQKLVPPSWHLENLEALKVSK 285 (388)
Q Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~ 285 (388)
.....+..+..+++|++|++++
T Consensus 141 l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 141 ITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEECHHHhcCCCCCCEEEecC
Confidence 3222233444445555555544
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.99 E-value=6.5e-09 Score=89.28 Aligned_cols=98 Identities=19% Similarity=0.213 Sum_probs=50.4
Q ss_pred cEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcc
Q 040122 107 EWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNST 186 (388)
Q Consensus 107 ~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 186 (388)
+.++.++ ..+..+|.. ..++++.|+++++ .+..+ +...+..+++|++|+++++ .++.+.+..
T Consensus 14 ~~v~c~~-~~l~~iP~~------------l~~~l~~L~l~~n-~i~~i--~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~- 75 (220)
T 2v9t_B 14 NIVDCRG-KGLTEIPTN------------LPETITEIRLEQN-TIKVI--PPGAFSPYKKLRRIDLSNN-QISELAPDA- 75 (220)
T ss_dssp TEEECTT-SCCSSCCSS------------CCTTCCEEECCSS-CCCEE--CTTSSTTCTTCCEEECCSS-CCCEECTTT-
T ss_pred CEEEcCC-CCcCcCCCc------------cCcCCCEEECCCC-cCCCc--CHhHhhCCCCCCEEECCCC-cCCCcCHHH-
Confidence 5566665 345555431 1356777777765 34444 2223556777777777775 455553332
Q ss_pred eeeecccCCCccccccCCceEEEec-cccccccc-ccCCCCcceEEecC
Q 040122 187 FVLHMTADNKEPQKLKSEENLLVAN-QIQHLFDE-KVAFPQLGNLRLSG 233 (388)
Q Consensus 187 ~~~~l~~~~~~l~~l~~L~~L~l~~-~~~~~~~~-~~~~~~L~~L~l~~ 233 (388)
+.++++|+.|++++ ....++.. +..+++|+.|++++
T Consensus 76 -----------~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 113 (220)
T 2v9t_B 76 -----------FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNA 113 (220)
T ss_dssp -----------TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred -----------hhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCC
Confidence 45555555555554 22222222 23344455555544
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.97 E-value=2.7e-09 Score=98.97 Aligned_cols=155 Identities=21% Similarity=0.136 Sum_probs=88.5
Q ss_pred cCCccEEEecCCCCCcccCChhhhh-cCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCccccccc
Q 040122 77 FNNLAELVVDDSTNMSSAIPANLLR-CLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFC 155 (388)
Q Consensus 77 ~~~L~~L~l~~~~~l~~~~~~~~~~-~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 155 (388)
.++++.|++++| .++.+++.. +. ++++|++|++++| .+..++... +..+++|++|+++++. ++.+
T Consensus 38 ~~~l~~L~Ls~N-~l~~l~~~~-~~~~l~~L~~L~L~~N-~i~~i~~~~---------~~~l~~L~~L~Ls~N~-l~~~- 103 (361)
T 2xot_A 38 PSYTALLDLSHN-NLSRLRAEW-TPTRLTNLHSLLLSHN-HLNFISSEA---------FVPVPNLRYLDLSSNH-LHTL- 103 (361)
T ss_dssp CTTCSEEECCSS-CCCEECTTS-SSSCCTTCCEEECCSS-CCCEECTTT---------TTTCTTCCEEECCSSC-CCEE-
T ss_pred CCCCCEEECCCC-CCCccChhh-hhhcccccCEEECCCC-cCCccChhh---------ccCCCCCCEEECCCCc-CCcC-
Confidence 456778888777 566644433 44 7778888888774 455553311 3557778888887653 5555
Q ss_pred CCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEec-ccccccccc----cCCCCcceEE
Q 040122 156 NFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVAN-QIQHLFDEK----VAFPQLGNLR 230 (388)
Q Consensus 156 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~----~~~~~L~~L~ 230 (388)
+...+..+++|++|+++++ .++.++... +..+++|+.|++++ ....++... ..+++|+.|+
T Consensus 104 -~~~~~~~l~~L~~L~L~~N-~i~~~~~~~------------~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 104 -DEFLFSDLQALEVLLLYNN-HIVVVDRNA------------FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp -CTTTTTTCTTCCEEECCSS-CCCEECTTT------------TTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEE
T ss_pred -CHHHhCCCcCCCEEECCCC-cccEECHHH------------hCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEE
Confidence 2233556777888887775 455554432 56677777777766 333333222 4566777777
Q ss_pred ecCCCCcceecccCchhHhhhcc--ccEEEEecCC
Q 040122 231 LSGLHKVQHLWKENDESNKAFAN--LERLEISECS 263 (388)
Q Consensus 231 l~~~~~l~~~~~~~~~~~~~~~~--L~~L~i~~~~ 263 (388)
++++ .++.++...+ ..++. ++.|++.+++
T Consensus 170 L~~N-~l~~l~~~~~---~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 170 LSSN-KLKKLPLTDL---QKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCSS-CCCCCCHHHH---HHSCHHHHTTEECCSSC
T ss_pred CCCC-CCCccCHHHh---hhccHhhcceEEecCCC
Confidence 7663 4555443211 23333 3556665543
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.95 E-value=1.4e-11 Score=120.93 Aligned_cols=86 Identities=17% Similarity=0.118 Sum_probs=43.4
Q ss_pred ccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhc
Q 040122 220 KVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASK 299 (388)
Q Consensus 220 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 299 (388)
++.+++|+.|+++++ .++.+|... ..+++|+.|++++|. +..+| .+..+++|+.|+++++ .++.+.......
T Consensus 459 ~~~l~~L~~L~Ls~N-~l~~lp~~~----~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~ 530 (567)
T 1dce_A 459 LEQLLLVTHLDLSHN-RLRALPPAL----AALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLV 530 (567)
T ss_dssp GGGGTTCCEEECCSS-CCCCCCGGG----GGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGG
T ss_pred ccccccCcEeecCcc-cccccchhh----hcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHh
Confidence 444555555555553 344443321 455556666665543 33344 5555666666666654 444442111224
Q ss_pred CccccceeeEcccc
Q 040122 300 NLVNLGRMMIADCK 313 (388)
Q Consensus 300 ~l~~L~~L~l~~~~ 313 (388)
.+++|+.|++++|+
T Consensus 531 ~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 531 SCPRLVLLNLQGNS 544 (567)
T ss_dssp GCTTCCEEECTTSG
T ss_pred cCCCCCEEEecCCc
Confidence 56666666666654
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.93 E-value=5.2e-10 Score=89.85 Aligned_cols=113 Identities=20% Similarity=0.208 Sum_probs=69.8
Q ss_pred CCCCcceEEecCccccc--eeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceeccccc
Q 040122 48 GFLDINRLQLSHFPRLQ--EIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEE 125 (388)
Q Consensus 48 ~~~~L~~L~l~~~~~l~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~ 125 (388)
.+++|++|+++++. +. .++... ..+++|++|++++| .++.. + .++++++|++|++++|.....++..
T Consensus 15 ~~~~l~~L~l~~n~-l~~~~~~~~~----~~l~~L~~L~l~~n-~l~~~-~--~~~~l~~L~~L~Ls~n~i~~~~~~~-- 83 (149)
T 2je0_A 15 TPSDVKELVLDNSR-SNEGKLEGLT----DEFEELEFLSTINV-GLTSI-A--NLPKLNKLKKLELSDNRVSGGLEVL-- 83 (149)
T ss_dssp CGGGCSEEECTTCB-CBTTBCCSCC----TTCTTCCEEECTTS-CCCCC-T--TCCCCTTCCEEECCSSCCCSCTHHH--
T ss_pred CCccCeEEEccCCc-CChhHHHHHH----hhcCCCcEEECcCC-CCCCc-h--hhhcCCCCCEEECCCCcccchHHHH--
Confidence 44778888888775 54 333222 56788888888877 56654 2 2677888888888876432223332
Q ss_pred ccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCccccc
Q 040122 126 LSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFT 182 (388)
Q Consensus 126 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 182 (388)
...+++|++|+++++. ++.+..+.. +..+++|++|++++| .++..+
T Consensus 84 --------~~~l~~L~~L~ls~N~-i~~~~~~~~-~~~l~~L~~L~l~~N-~l~~~~ 129 (149)
T 2je0_A 84 --------AEKCPNLTHLNLSGNK-IKDLSTIEP-LKKLENLKSLDLFNC-EVTNLN 129 (149)
T ss_dssp --------HHHCTTCCEEECTTSC-CCSHHHHGG-GGGCTTCCEEECTTC-GGGGST
T ss_pred --------hhhCCCCCEEECCCCc-CCChHHHHH-HhhCCCCCEEeCcCC-cccchH
Confidence 2347778888887764 444311122 567778888888776 455554
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.92 E-value=9.8e-11 Score=114.91 Aligned_cols=119 Identities=14% Similarity=0.110 Sum_probs=69.5
Q ss_pred cccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEec-cccccc
Q 040122 139 RLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVAN-QIQHLF 217 (388)
Q Consensus 139 ~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~-~~~~~~ 217 (388)
.|+.|+++++ .++.+ + . ++.+++|++|+++++ .++.+|.. ++.+++|+.|++++ ....++
T Consensus 442 ~L~~L~Ls~n-~l~~l--p-~-~~~l~~L~~L~Ls~N-~l~~lp~~-------------~~~l~~L~~L~Ls~N~l~~lp 502 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVL--C-H-LEQLLLVTHLDLSHN-RLRALPPA-------------LAALRCLEVLQASDNALENVD 502 (567)
T ss_dssp TCSEEECTTS-CCSSC--C-C-GGGGTTCCEEECCSS-CCCCCCGG-------------GGGCTTCCEEECCSSCCCCCG
T ss_pred CceEEEecCC-CCCCC--c-C-ccccccCcEeecCcc-cccccchh-------------hhcCCCCCEEECCCCCCCCCc
Confidence 4666777665 34444 2 2 556677777777765 45555432 66677777777776 333344
Q ss_pred ccccCCCCcceEEecCCCCcceec-ccCchhHhhhccccEEEEecCCCcccccCCc----cccCCCCEEe
Q 040122 218 DEKVAFPQLGNLRLSGLHKVQHLW-KENDESNKAFANLERLEISECSKLQKLVPPS----WHLENLEALK 282 (388)
Q Consensus 218 ~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~----~~~~~L~~L~ 282 (388)
.++.+++|+.|+++++ .++.+. +.. ...+++|+.|++++|.. ..+|... ..+++|+.|+
T Consensus 503 -~l~~l~~L~~L~Ls~N-~l~~~~~p~~---l~~l~~L~~L~L~~N~l-~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 503 -GVANLPRLQELLLCNN-RLQQSAAIQP---LVSCPRLVLLNLQGNSL-CQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp -GGTTCSSCCEEECCSS-CCCSSSTTGG---GGGCTTCCEEECTTSGG-GGSSSCTTHHHHHCTTCSEEE
T ss_pred -ccCCCCCCcEEECCCC-CCCCCCCcHH---HhcCCCCCEEEecCCcC-CCCccHHHHHHHHCcccCccC
Confidence 5667777777777764 455552 221 15677777777777653 3333322 2367777765
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.90 E-value=4.7e-09 Score=85.98 Aligned_cols=13 Identities=15% Similarity=0.110 Sum_probs=6.6
Q ss_pred CCCcceEEeccCC
Q 040122 359 FPSLKQVVVRQCP 371 (388)
Q Consensus 359 ~~~L~~L~l~~c~ 371 (388)
+|+|++|++.+|.
T Consensus 146 l~~L~~L~l~~n~ 158 (168)
T 2ell_A 146 LPQLTYLDGYDRE 158 (168)
T ss_dssp CSSCCEETTEETT
T ss_pred CccCcEecCCCCC
Confidence 4555555555543
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=6.1e-09 Score=95.24 Aligned_cols=98 Identities=17% Similarity=0.197 Sum_probs=51.6
Q ss_pred cCCCCEEeeccCcCcccccchhhhcCccccceeeEccccccchhhcccccccCCccccccccc-eEecccCCCcceecCC
Q 040122 275 LENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELE-YLGLDCLPSLTSFCLG 353 (388)
Q Consensus 275 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~~ 353 (388)
+++|+.+++.++ .++.++...+ .+|++|+.+++.++ ++.+.. + ....+++|+ .+.+.+ +++.+..+
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF-~~~~~L~~l~l~~n--i~~I~~---~----aF~~~~~L~~~l~l~~--~l~~I~~~ 291 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTF-AQKKYLLKIKLPHN--LKTIGQ---R----VFSNCGRLAGTLELPA--SVTAIEFG 291 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTT-TTCTTCCEEECCTT--CCEECT---T----TTTTCTTCCEEEEECT--TCCEECTT
T ss_pred cCCCeEEECCCC-CcceecHhhh-hCCCCCCEEECCcc--cceehH---H----HhhCChhccEEEEEcc--cceEEchh
Confidence 566777777653 3555443322 55667777776653 333322 1 113345666 666655 45555544
Q ss_pred CccccCCCcceEEeccCCCcccccC-CCCCCCCCC
Q 040122 354 NYALEFPSLKQVVVRQCPKMKIFSQ-GLLDTPMLN 387 (388)
Q Consensus 354 ~~~~~~~~L~~L~l~~c~~l~~lp~-~~~~~~~L~ 387 (388)
.. ..|++|+.+++.+ .+++.++. .+.++++|+
T Consensus 292 aF-~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 292 AF-MGCDNLRYVLATG-DKITTLGDELFGNGVPSK 324 (329)
T ss_dssp TT-TTCTTEEEEEECS-SCCCEECTTTTCTTCCCC
T ss_pred hh-hCCccCCEEEeCC-CccCccchhhhcCCcchh
Confidence 31 1266777777654 34555543 444555554
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.82 E-value=1.1e-08 Score=84.45 Aligned_cols=38 Identities=34% Similarity=0.390 Sum_probs=17.5
Q ss_pred CcCccccEeecccCcccccccCCCCccccCCCcceEeEecC
Q 040122 135 PLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENC 175 (388)
Q Consensus 135 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 175 (388)
..+++|++|+++++. +..+ +......+++|++|+++++
T Consensus 61 ~~l~~L~~L~Ls~N~-l~~~--~~~~~~~l~~L~~L~L~~N 98 (176)
T 1a9n_A 61 PLLRRLKTLLVNNNR-ICRI--GEGLDQALPDLTELILTNN 98 (176)
T ss_dssp CCCSSCCEEECCSSC-CCEE--CSCHHHHCTTCCEEECCSC
T ss_pred ccCCCCCEEECCCCc-cccc--CcchhhcCCCCCEEECCCC
Confidence 345555555555442 3333 2221244555555555554
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.81 E-value=5.7e-09 Score=83.68 Aligned_cols=11 Identities=18% Similarity=0.537 Sum_probs=4.9
Q ss_pred CCcceEeEecC
Q 040122 165 PKLEYLIIENC 175 (388)
Q Consensus 165 ~~L~~L~l~~c 175 (388)
++|++|++.+|
T Consensus 17 ~~l~~L~l~~n 27 (149)
T 2je0_A 17 SDVKELVLDNS 27 (149)
T ss_dssp GGCSEEECTTC
T ss_pred ccCeEEEccCC
Confidence 34444444443
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.78 E-value=4.5e-08 Score=82.06 Aligned_cols=82 Identities=18% Similarity=0.206 Sum_probs=38.0
Q ss_pred CccEEEecCCCCCcccCChhhhhcCCCCcEEEecccccccee-cccccccccccccCCcCccccEeecccCcccccccCC
Q 040122 79 NLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEV-LHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNF 157 (388)
Q Consensus 79 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 157 (388)
++++|++++| .++.+++...++++++|++|++++| .+..+ +.. +..+++|++|+++++ .+..+ +
T Consensus 30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~----------~~~l~~L~~L~Ls~N-~l~~~--~ 94 (192)
T 1w8a_A 30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNA----------FEGASHIQELQLGEN-KIKEI--S 94 (192)
T ss_dssp TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTT----------TTTCTTCCEEECCSC-CCCEE--C
T ss_pred CCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhH----------cCCcccCCEEECCCC-cCCcc--C
Confidence 5556666555 4444333323455556666666553 22222 111 234555555555544 23333 1
Q ss_pred CCccccCCCcceEeEecC
Q 040122 158 TGNIIELPKLEYLIIENC 175 (388)
Q Consensus 158 ~~~~~~l~~L~~L~l~~c 175 (388)
...+..+++|++|+++++
T Consensus 95 ~~~~~~l~~L~~L~L~~N 112 (192)
T 1w8a_A 95 NKMFLGLHQLKTLNLYDN 112 (192)
T ss_dssp SSSSTTCTTCCEEECCSS
T ss_pred HHHhcCCCCCCEEECCCC
Confidence 122334555555555554
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.77 E-value=1.1e-07 Score=86.72 Aligned_cols=101 Identities=11% Similarity=0.026 Sum_probs=75.1
Q ss_pred cccCCceEEEec-ccccccc-cccCCCCcceEEecCCCCcceecccCchhHhhhcccc-EEEEecCCCccccc-CCcccc
Q 040122 200 KLKSEENLLVAN-QIQHLFD-EKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLE-RLEISECSKLQKLV-PPSWHL 275 (388)
Q Consensus 200 ~l~~L~~L~l~~-~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~-~L~i~~~~~~~~~~-~~~~~~ 275 (388)
.+++|+.+++.+ ....++. .+..+++|+++++.+ +++.++...| ..+++|+ .+.+.+ .+..+. ..+..+
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~--ni~~I~~~aF---~~~~~L~~~l~l~~--~l~~I~~~aF~~c 296 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH--NLKTIGQRVF---SNCGRLAGTLELPA--SVTAIEFGAFMGC 296 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT--TCCEECTTTT---TTCTTCCEEEEECT--TCCEECTTTTTTC
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc--ccceehHHHh---hCChhccEEEEEcc--cceEEchhhhhCC
Confidence 378999999987 4555543 456788999999987 3888887765 7788999 999988 455554 467788
Q ss_pred CCCCEEeeccCcCcccccchhhhcCccccceeeE
Q 040122 276 ENLEALKVSKCHELINVLTLSASKNLVNLGRMMI 309 (388)
Q Consensus 276 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l 309 (388)
++|+.+++.+. .++.+....+ .++++|+.++.
T Consensus 297 ~~L~~l~l~~n-~i~~I~~~aF-~~~~~L~~ly~ 328 (329)
T 3sb4_A 297 DNLRYVLATGD-KITTLGDELF-GNGVPSKLIYK 328 (329)
T ss_dssp TTEEEEEECSS-CCCEECTTTT-CTTCCCCEEEC
T ss_pred ccCCEEEeCCC-ccCccchhhh-cCCcchhhhcc
Confidence 99999999653 5666654433 67888988763
No 127
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.72 E-value=4.7e-06 Score=78.00 Aligned_cols=41 Identities=5% Similarity=0.053 Sum_probs=18.7
Q ss_pred cccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCC
Q 040122 139 RLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSN 184 (388)
Q Consensus 139 ~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 184 (388)
+|+.+.+.+ .++.+ +......|++|+.+++.++ +++.++..
T Consensus 158 ~L~~i~lp~--~l~~I--~~~aF~~c~~L~~l~l~~n-~l~~I~~~ 198 (401)
T 4fdw_A 158 TVQEIVFPS--TLEQL--KEDIFYYCYNLKKADLSKT-KITKLPAS 198 (401)
T ss_dssp CCCEEECCT--TCCEE--CSSTTTTCTTCCEEECTTS-CCSEECTT
T ss_pred CceEEEeCC--CccEe--hHHHhhCcccCCeeecCCC-cceEechh
Confidence 455555543 23343 2232445555555555542 34444433
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.72 E-value=2.5e-08 Score=82.33 Aligned_cols=131 Identities=15% Similarity=0.177 Sum_probs=66.5
Q ss_pred hcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCccc
Q 040122 101 RCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMET 180 (388)
Q Consensus 101 ~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 180 (388)
..+++|++|++++| .+..++.. ....++|++|+++++ .++.+ ..+..+++|++|+++++ .++.
T Consensus 16 ~~~~~L~~L~l~~n-~l~~i~~~----------~~~~~~L~~L~Ls~N-~l~~~----~~l~~l~~L~~L~Ls~N-~l~~ 78 (176)
T 1a9n_A 16 TNAVRDRELDLRGY-KIPVIENL----------GATLDQFDAIDFSDN-EIRKL----DGFPLLRRLKTLLVNNN-RICR 78 (176)
T ss_dssp ECTTSCEEEECTTS-CCCSCCCG----------GGGTTCCSEEECCSS-CCCEE----CCCCCCSSCCEEECCSS-CCCE
T ss_pred CCcCCceEEEeeCC-CCchhHHh----------hhcCCCCCEEECCCC-CCCcc----cccccCCCCCEEECCCC-cccc
Confidence 34455666666664 33333222 122336666666654 23443 12557788888888886 5665
Q ss_pred ccCCcceeeecccCCCccccccCCceEEEecccccccccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEe
Q 040122 181 FTSNSTFVLHMTADNKEPQKLKSEENLLVANQIQHLFDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEIS 260 (388)
Q Consensus 181 ~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~ 260 (388)
++... +..++ +|+.|+++++ .++.++.. .....+++|+.|+++
T Consensus 79 ~~~~~------------~~~l~----------------------~L~~L~L~~N-~i~~~~~~--~~l~~l~~L~~L~l~ 121 (176)
T 1a9n_A 79 IGEGL------------DQALP----------------------DLTELILTNN-SLVELGDL--DPLASLKSLTYLCIL 121 (176)
T ss_dssp ECSCH------------HHHCT----------------------TCCEEECCSC-CCCCGGGG--GGGGGCTTCCEEECC
T ss_pred cCcch------------hhcCC----------------------CCCEEECCCC-cCCcchhh--HhhhcCCCCCEEEec
Confidence 54431 24444 4555555443 23333320 011445556666666
Q ss_pred cCCCcccccCC----ccccCCCCEEeeccC
Q 040122 261 ECSKLQKLVPP----SWHLENLEALKVSKC 286 (388)
Q Consensus 261 ~~~~~~~~~~~----~~~~~~L~~L~l~~c 286 (388)
+|+. ..++.. +..+++|++|+++++
T Consensus 122 ~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 122 RNPV-TNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp SSGG-GGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCC-CCcHhHHHHHHHHCCccceeCCCcC
Confidence 5532 233332 556677777777665
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.69 E-value=1.7e-07 Score=78.63 Aligned_cols=90 Identities=17% Similarity=0.173 Sum_probs=46.9
Q ss_pred cCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccC
Q 040122 77 FNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCN 156 (388)
Q Consensus 77 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 156 (388)
.++|++|++++| .++.++ . .+.++++|++|++++| .+..++... +..+++|+.|+++++. +..+
T Consensus 30 ~~~l~~L~L~~n-~i~~ip-~-~~~~l~~L~~L~Ls~N-~i~~i~~~~---------f~~l~~L~~L~Ls~N~-l~~i-- 93 (193)
T 2wfh_A 30 PRDVTELYLDGN-QFTLVP-K-ELSNYKHLTLIDLSNN-RISTLSNQS---------FSNMTQLLTLILSYNR-LRCI-- 93 (193)
T ss_dssp CTTCCEEECCSS-CCCSCC-G-GGGGCTTCCEEECCSS-CCCCCCTTT---------TTTCTTCCEEECCSSC-CCBC--
T ss_pred CCCCCEEECCCC-cCchhH-H-HhhcccCCCEEECCCC-cCCEeCHhH---------ccCCCCCCEEECCCCc-cCEe--
Confidence 356666666666 455433 2 2666666666666664 333332210 2445666666666542 4444
Q ss_pred CCCccccCCCcceEeEecCCCcccccC
Q 040122 157 FTGNIIELPKLEYLIIENCPDMETFTS 183 (388)
Q Consensus 157 ~~~~~~~l~~L~~L~l~~c~~l~~~~~ 183 (388)
+...+..+++|++|+++++ .++.++.
T Consensus 94 ~~~~f~~l~~L~~L~L~~N-~l~~~~~ 119 (193)
T 2wfh_A 94 PPRTFDGLKSLRLLSLHGN-DISVVPE 119 (193)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCCBCCT
T ss_pred CHHHhCCCCCCCEEECCCC-CCCeeCh
Confidence 2222445666666666664 4444443
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.64 E-value=2.5e-07 Score=76.29 Aligned_cols=90 Identities=16% Similarity=0.191 Sum_probs=45.2
Q ss_pred cCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccC
Q 040122 77 FNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCN 156 (388)
Q Consensus 77 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 156 (388)
.++|++|++++| .++.+++. .++++++|++|++++| .+..++... +..+++|+.|+++++ .++.+
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~---------~~~l~~L~~L~l~~N-~l~~~-- 91 (177)
T 2o6r_A 27 PSSATRLELESN-KLQSLPHG-VFDKLTQLTKLSLSQN-QIQSLPDGV---------FDKLTKLTILYLHEN-KLQSL-- 91 (177)
T ss_dssp CTTCSEEECCSS-CCCCCCTT-TTTTCTTCSEEECCSS-CCCCCCTTT---------TTTCTTCCEEECCSS-CCCCC--
T ss_pred CCCCcEEEeCCC-cccEeCHH-HhcCcccccEEECCCC-cceEeChhH---------ccCCCccCEEECCCC-Ccccc--
Confidence 456666666665 34443332 2456666666666664 333332210 234566666666554 23333
Q ss_pred CCCccccCCCcceEeEecCCCccccc
Q 040122 157 FTGNIIELPKLEYLIIENCPDMETFT 182 (388)
Q Consensus 157 ~~~~~~~l~~L~~L~l~~c~~l~~~~ 182 (388)
+...+..+++|++|++.++ .++.++
T Consensus 92 ~~~~~~~l~~L~~L~l~~N-~l~~~~ 116 (177)
T 2o6r_A 92 PNGVFDKLTQLKELALDTN-QLKSVP 116 (177)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred CHHHhhCCcccCEEECcCC-cceEeC
Confidence 2222345566666666664 444443
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.64 E-value=3.1e-06 Score=79.24 Aligned_cols=215 Identities=12% Similarity=0.128 Sum_probs=120.7
Q ss_pred CCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceeccccccccc
Q 040122 50 LDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAK 129 (388)
Q Consensus 50 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~ 129 (388)
.+|+.+.+... +..+.... . .. .+|+.+.+.. .++.+.. ..+.+|++|+.+++.+ +.+..++...
T Consensus 135 ~~L~~i~l~~~--i~~I~~~a-F--~~-~~L~~i~lp~--~l~~I~~-~aF~~c~~L~~l~l~~-n~l~~I~~~a----- 199 (401)
T 4fdw_A 135 SQIAKVVLNEG--LKSIGDMA-F--FN-STVQEIVFPS--TLEQLKE-DIFYYCYNLKKADLSK-TKITKLPAST----- 199 (401)
T ss_dssp CCCSEEECCTT--CCEECTTT-T--TT-CCCCEEECCT--TCCEECS-STTTTCTTCCEEECTT-SCCSEECTTT-----
T ss_pred CCccEEEeCCC--ccEECHHh-c--CC-CCceEEEeCC--CccEehH-HHhhCcccCCeeecCC-CcceEechhh-----
Confidence 46777776542 55444433 1 12 3677777764 4555333 3377888888888876 3556664432
Q ss_pred ccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEE
Q 040122 130 EEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLV 209 (388)
Q Consensus 130 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l 209 (388)
+. +.+|+.+.+.+ .++.+ +..+...|++|+.+.+.+ +++.++... +.+ .+|+.+.+
T Consensus 200 ----F~-~~~L~~l~lp~--~l~~I--~~~aF~~~~~L~~l~l~~--~l~~I~~~a------------F~~-~~L~~i~l 255 (401)
T 4fdw_A 200 ----FV-YAGIEEVLLPV--TLKEI--GSQAFLKTSQLKTIEIPE--NVSTIGQEA------------FRE-SGITTVKL 255 (401)
T ss_dssp ----TT-TCCCSEEECCT--TCCEE--CTTTTTTCTTCCCEECCT--TCCEECTTT------------TTT-CCCSEEEE
T ss_pred ----Ee-ecccCEEEeCC--chhee--hhhHhhCCCCCCEEecCC--CccCccccc------------ccc-CCccEEEe
Confidence 12 56777777753 25555 334456777788777765 355555443 333 56777777
Q ss_pred ecccccc-cccccCCCCcceEEecCCC----CcceecccCchhHhhhccccEEEEecCCCcccccC-CccccCCCCEEee
Q 040122 210 ANQIQHL-FDEKVAFPQLGNLRLSGLH----KVQHLWKENDESNKAFANLERLEISECSKLQKLVP-PSWHLENLEALKV 283 (388)
Q Consensus 210 ~~~~~~~-~~~~~~~~~L~~L~l~~~~----~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~-~~~~~~~L~~L~l 283 (388)
.+....+ ...+..+++|+.+.+.+.. ....+....| ..|++|+.+.+.+ .+..+.. .+..+.+|+.+.+
T Consensus 256 p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF---~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 256 PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL---EGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT---TTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEE
T ss_pred CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh---hCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEE
Confidence 5533333 2334456777777775421 1123444433 5666777777764 2444432 3455677777777
Q ss_pred ccCcCcccccchhhhcCccccceeeEccc
Q 040122 284 SKCHELINVLTLSASKNLVNLGRMMIADC 312 (388)
Q Consensus 284 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 312 (388)
.. .++.+....+ .++ +|+.+++.++
T Consensus 331 p~--~l~~I~~~aF-~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 331 PA--NVTQINFSAF-NNT-GIKEVKVEGT 355 (401)
T ss_dssp CT--TCCEECTTSS-SSS-CCCEEEECCS
T ss_pred Cc--cccEEcHHhC-CCC-CCCEEEEcCC
Confidence 54 3444433322 455 7777777665
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.62 E-value=3.6e-07 Score=76.47 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=37.2
Q ss_pred ccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCccccCCCCEEeeccC
Q 040122 220 KVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKC 286 (388)
Q Consensus 220 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c 286 (388)
++.+++|+.|+++++ .++.++...+ ..+++|++|+++++......+..+..+++|++|+++++
T Consensus 74 ~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 74 FEGASHIQELQLGEN-KIKEISNKMF---LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp TTTCTTCCEEECCSC-CCCEECSSSS---TTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred cCCcccCCEEECCCC-cCCccCHHHh---cCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 344556666666653 4555544322 44566677777666544444556666777777777765
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.60 E-value=2.9e-07 Score=77.18 Aligned_cols=98 Identities=15% Similarity=0.101 Sum_probs=44.3
Q ss_pred cEeecccCcccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEec-cccccc-c
Q 040122 141 LSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVAN-QIQHLF-D 218 (388)
Q Consensus 141 ~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~-~~~~~~-~ 218 (388)
+.+++++. .++.+ +.. -.++|++|++.++ .++.++.. +..+++|+.|++++ ....++ .
T Consensus 13 ~~l~~~~~-~l~~i--p~~---~~~~l~~L~L~~n-~i~~ip~~-------------~~~l~~L~~L~Ls~N~i~~i~~~ 72 (193)
T 2wfh_A 13 TVVRCSNK-GLKVL--PKG---IPRDVTELYLDGN-QFTLVPKE-------------LSNYKHLTLIDLSNNRISTLSNQ 72 (193)
T ss_dssp TEEECTTS-CCSSC--CSC---CCTTCCEEECCSS-CCCSCCGG-------------GGGCTTCCEEECCSSCCCCCCTT
T ss_pred CEEEcCCC-CCCcC--CCC---CCCCCCEEECCCC-cCchhHHH-------------hhcccCCCEEECCCCcCCEeCHh
Confidence 44555443 34444 222 2357777777775 45544421 45555555555554 222221 2
Q ss_pred cccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecC
Q 040122 219 EKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISEC 262 (388)
Q Consensus 219 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~ 262 (388)
.+..+++|++|+++++ .++.++...+ ..+++|+.|+++++
T Consensus 73 ~f~~l~~L~~L~Ls~N-~l~~i~~~~f---~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 73 SFSNMTQLLTLILSYN-RLRCIPPRTF---DGLKSLRLLSLHGN 112 (193)
T ss_dssp TTTTCTTCCEEECCSS-CCCBCCTTTT---TTCTTCCEEECCSS
T ss_pred HccCCCCCCEEECCCC-ccCEeCHHHh---CCCCCCCEEECCCC
Confidence 2344455555555442 3343333221 33344444444443
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.59 E-value=2.3e-08 Score=101.06 Aligned_cols=106 Identities=14% Similarity=0.000 Sum_probs=65.4
Q ss_pred hhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCcc
Q 040122 100 LRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDME 179 (388)
Q Consensus 100 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 179 (388)
+..+++|++|++++|. +..++.. ...+++|++|+|+++. +..+ +.. ++.+++|++|+++++ .++
T Consensus 220 ~~~l~~L~~L~Ls~n~-l~~l~~~----------~~~l~~L~~L~Ls~N~-l~~l--p~~-~~~l~~L~~L~Ls~N-~l~ 283 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQ-IFNISAN----------IFKYDFLTRLYLNGNS-LTEL--PAE-IKNLSNLRVLDLSHN-RLT 283 (727)
T ss_dssp --CCCCCCEEECTTSC-CSCCCGG----------GGGCCSCSCCBCTTSC-CSCC--CGG-GGGGTTCCEEECTTS-CCS
T ss_pred hccCCCCcEEECCCCC-CCCCChh----------hcCCCCCCEEEeeCCc-Cccc--Chh-hhCCCCCCEEeCcCC-cCC
Confidence 6667777777777743 3344432 2346777777777653 4444 323 566777777777775 455
Q ss_pred cccCCcceeeecccCCCccccccCCceEEEec-ccccccccccCCCCcceEEecCC
Q 040122 180 TFTSNSTFVLHMTADNKEPQKLKSEENLLVAN-QIQHLFDEKVAFPQLGNLRLSGL 234 (388)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~ 234 (388)
.+|.. ++.+++|+.|++++ ....++..++.+++|+.|+++++
T Consensus 284 ~lp~~-------------~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 284 SLPAE-------------LGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCSS-------------GGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTS
T ss_pred ccChh-------------hcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCC
Confidence 55443 66677777777776 44566666777777777777764
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.58 E-value=1.8e-07 Score=77.08 Aligned_cols=116 Identities=20% Similarity=0.186 Sum_probs=83.1
Q ss_pred HHHhhhccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccce
Q 040122 40 QKCYDEKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEE 119 (388)
Q Consensus 40 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 119 (388)
..+|..+ +++|++|+++++. +..++... ...+++|++|++++| .++.+++. .+..+++|++|++++| .+..
T Consensus 20 ~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~ 90 (177)
T 2o6r_A 20 TSVPTGI--PSSATRLELESNK-LQSLPHGV---FDKLTQLTKLSLSQN-QIQSLPDG-VFDKLTKLTILYLHEN-KLQS 90 (177)
T ss_dssp SSCCTTC--CTTCSEEECCSSC-CCCCCTTT---TTTCTTCSEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCC
T ss_pred ccCCCCC--CCCCcEEEeCCCc-ccEeCHHH---hcCcccccEEECCCC-cceEeChh-HccCCCccCEEECCCC-Cccc
Confidence 3344333 4789999999876 66443322 146899999999998 67775543 3789999999999996 4555
Q ss_pred ecccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCC
Q 040122 120 VLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCP 176 (388)
Q Consensus 120 i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 176 (388)
++... +..+++|++|+++++ .++.+ +...+..+++|++|++.+++
T Consensus 91 ~~~~~---------~~~l~~L~~L~l~~N-~l~~~--~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 91 LPNGV---------FDKLTQLKELALDTN-QLKSV--PDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCTTT---------TTTCTTCCEEECCSS-CCSCC--CTTTTTTCTTCCEEECCSSC
T ss_pred cCHHH---------hhCCcccCEEECcCC-cceEe--CHHHhcCCcccCEEEecCCC
Confidence 44321 356899999999987 45665 33334678999999999874
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.48 E-value=2e-07 Score=94.20 Aligned_cols=118 Identities=19% Similarity=0.162 Sum_probs=83.2
Q ss_pred HHHHhhhccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccc
Q 040122 39 IQKCYDEKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLE 118 (388)
Q Consensus 39 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 118 (388)
+...+..+..+++|+.|+++++. +..++... ..+++|++|+|++| .++.+ |.. +.++++|++|++++|. +.
T Consensus 213 ~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~----~~l~~L~~L~Ls~N-~l~~l-p~~-~~~l~~L~~L~Ls~N~-l~ 283 (727)
T 4b8c_D 213 MVMPKDSKYDDQLWHALDLSNLQ-IFNISANI----FKYDFLTRLYLNGN-SLTEL-PAE-IKNLSNLRVLDLSHNR-LT 283 (727)
T ss_dssp ---------CCCCCCEEECTTSC-CSCCCGGG----GGCCSCSCCBCTTS-CCSCC-CGG-GGGGTTCCEEECTTSC-CS
T ss_pred eecChhhhccCCCCcEEECCCCC-CCCCChhh----cCCCCCCEEEeeCC-cCccc-Chh-hhCCCCCCEEeCcCCc-CC
Confidence 33445666778899999999876 66555555 57899999999988 66664 444 7899999999999964 55
Q ss_pred eecccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecCCCccc
Q 040122 119 EVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMET 180 (388)
Q Consensus 119 ~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 180 (388)
.+|.. +..+++|++|+++++ .+..+ +.. ++.+++|++|+++++ .++.
T Consensus 284 ~lp~~----------~~~l~~L~~L~L~~N-~l~~l--p~~-~~~l~~L~~L~L~~N-~l~~ 330 (727)
T 4b8c_D 284 SLPAE----------LGSCFQLKYFYFFDN-MVTTL--PWE-FGNLCNLQFLGVEGN-PLEK 330 (727)
T ss_dssp SCCSS----------GGGGTTCSEEECCSS-CCCCC--CSS-TTSCTTCCCEECTTS-CCCS
T ss_pred ccChh----------hcCCCCCCEEECCCC-CCCcc--Chh-hhcCCCccEEeCCCC-ccCC
Confidence 66554 356899999999887 45666 444 778999999999987 4443
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.46 E-value=2.4e-09 Score=90.40 Aligned_cols=81 Identities=17% Similarity=0.215 Sum_probs=41.0
Q ss_pred cccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccc
Q 040122 75 RFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRF 154 (388)
Q Consensus 75 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 154 (388)
..+++|++|++++| .+..++ .+.++++|++|++++| .+..++.. ...+++|+.|+++++ .+..+
T Consensus 45 ~~l~~L~~L~ls~n-~l~~l~---~~~~l~~L~~L~l~~n-~l~~l~~~----------~~~~~~L~~L~L~~N-~l~~l 108 (198)
T 1ds9_A 45 STLKACKHLALSTN-NIEKIS---SLSGMENLRILSLGRN-LIKKIENL----------DAVADTLEELWISYN-QIASL 108 (198)
T ss_dssp HHTTTCSEEECSEE-EESCCC---CHHHHTTCCEEEEEEE-EECSCSSH----------HHHHHHCSEEEEEEE-ECCCH
T ss_pred hcCCCCCEEECCCC-CCcccc---ccccCCCCCEEECCCC-Ccccccch----------hhcCCcCCEEECcCC-cCCcC
Confidence 34566666666665 444432 1566666666666664 23333322 123455666666554 23333
Q ss_pred cCCCCccccCCCcceEeEecC
Q 040122 155 CNFTGNIIELPKLEYLIIENC 175 (388)
Q Consensus 155 ~~~~~~~~~l~~L~~L~l~~c 175 (388)
. .+..+++|++|++.++
T Consensus 109 ~----~~~~l~~L~~L~l~~N 125 (198)
T 1ds9_A 109 S----GIEKLVNLRVLYMSNN 125 (198)
T ss_dssp H----HHHHHHHSSEEEESEE
T ss_pred C----ccccCCCCCEEECCCC
Confidence 1 1445555566655554
No 138
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.44 E-value=1e-07 Score=77.83 Aligned_cols=90 Identities=20% Similarity=0.289 Sum_probs=41.2
Q ss_pred cccEEEEecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcC---ccccceeeEccccccchhhcccccccCCc
Q 040122 253 NLERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKN---LVNLGRMMIADCKMIEQIIQLQVGEEAKD 329 (388)
Q Consensus 253 ~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~---l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 329 (388)
.|+.|++++|.....-...+..+++|+.|++++|..++|.....+... +++|++|++++|..+++. |+..+
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-----Gl~~L- 135 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-----GIIAL- 135 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-----HHHHG-
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-----HHHHH-
Confidence 456666666542222222334555666666666655555433333221 234555555555544432 11111
Q ss_pred cccccccceEecccCCCcce
Q 040122 330 CNVFKELEYLGLDCLPSLTS 349 (388)
Q Consensus 330 ~~~~~~L~~L~l~~~~~l~~ 349 (388)
..+++|++|++++|+.+++
T Consensus 136 -~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 136 -HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp -GGCTTCCEEEEESCTTCCC
T ss_pred -hcCCCCCEEECCCCCCCCc
Confidence 2345555555555554443
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.42 E-value=2.2e-08 Score=84.38 Aligned_cols=62 Identities=24% Similarity=0.187 Sum_probs=31.5
Q ss_pred hhhccccEEEEecCCCcccccCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEcccc
Q 040122 249 KAFANLERLEISECSKLQKLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCK 313 (388)
Q Consensus 249 ~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 313 (388)
..+++|++|++++|. +..++ .+..+++|++|+++++ .+.+++.......+++|++|++++|+
T Consensus 90 ~~~~~L~~L~L~~N~-l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 90 AVADTLEELWISYNQ-IASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHHHCSEEEEEEEE-CCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred hcCCcCCEEECcCCc-CCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence 344556666666552 23333 3445566666666654 34433321223456666666666654
No 140
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.41 E-value=1.9e-07 Score=76.20 Aligned_cols=90 Identities=14% Similarity=0.189 Sum_probs=38.1
Q ss_pred CCCEEeeccCcCcccccchhhhcCccccceeeEccccccchhhcccccccCCccc--cccccceEecccCCCcceecCCC
Q 040122 277 NLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCN--VFKELEYLGLDCLPSLTSFCLGN 354 (388)
Q Consensus 277 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~ 354 (388)
+|+.|++++|. +++.....+ ..+++|++|++++|..+++. ++..+... .+++|++|++++|+++++-....
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~-----gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDG-----CLERLSQLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHH-----HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred eEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHH-----HHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 45555555553 444333222 34555555555555444332 11111100 12345555555555444322211
Q ss_pred ccccCCCcceEEeccCCCcc
Q 040122 355 YALEFPSLKQVVVRQCPKMK 374 (388)
Q Consensus 355 ~~~~~~~L~~L~l~~c~~l~ 374 (388)
.. .+++|++|++++|++++
T Consensus 135 L~-~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 135 LH-HFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GG-GCTTCCEEEEESCTTCC
T ss_pred Hh-cCCCCCEEECCCCCCCC
Confidence 11 24555555555555544
No 141
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.39 E-value=3.7e-05 Score=71.80 Aligned_cols=99 Identities=13% Similarity=0.161 Sum_probs=54.9
Q ss_pred ccccCCCCEEeeccCcCcccccchhhhcCccccceeeEccccccchhhcccccccCCccccccccceEecccCCCcceec
Q 040122 272 SWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTSFC 351 (388)
Q Consensus 272 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 351 (388)
+..+.+|+.+.+.. .++.+.... ..+|.+|+.+++.. .++.+.. . ....|.+|+.+.+.. +++.+.
T Consensus 293 F~~~~~L~~i~l~~--~i~~I~~~a-F~~c~~L~~i~lp~--~v~~I~~---~----aF~~c~~L~~i~lp~--~l~~I~ 358 (394)
T 4fs7_A 293 FYGCSSLTEVKLLD--SVKFIGEEA-FESCTSLVSIDLPY--LVEEIGK---R----SFRGCTSLSNINFPL--SLRKIG 358 (394)
T ss_dssp TTTCTTCCEEEECT--TCCEECTTT-TTTCTTCCEECCCT--TCCEECT---T----TTTTCTTCCEECCCT--TCCEEC
T ss_pred cccccccccccccc--ccceechhh-hcCCCCCCEEEeCC--cccEEhH---H----hccCCCCCCEEEECc--cccEeh
Confidence 34556777777653 344433322 25677787777742 2333311 0 113456788877743 366665
Q ss_pred CCCccccCCCcceEEeccCCCcccccCCCCCCCCCC
Q 040122 352 LGNYALEFPSLKQVVVRQCPKMKIFSQGLLDTPMLN 387 (388)
Q Consensus 352 ~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~ 387 (388)
..+. ..|++|+.+.+.. .++.+.....++++|+
T Consensus 359 ~~aF-~~C~~L~~i~lp~--~~~~~~~~F~~c~~L~ 391 (394)
T 4fs7_A 359 ANAF-QGCINLKKVELPK--RLEQYRYDFEDTTKFK 391 (394)
T ss_dssp TTTB-TTCTTCCEEEEEG--GGGGGGGGBCTTCEEE
T ss_pred HHHh-hCCCCCCEEEECC--CCEEhhheecCCCCCc
Confidence 5442 2378899888864 3444555566666654
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.32 E-value=2.9e-06 Score=69.42 Aligned_cols=84 Identities=21% Similarity=0.163 Sum_probs=45.2
Q ss_pred cCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccC
Q 040122 77 FNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCN 156 (388)
Q Consensus 77 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 156 (388)
.++|++|++++| .++.+++.. +.++++|++|++++| .+..++... +..+++|++|+++++ .+..+
T Consensus 29 ~~~l~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~Ls~N-~l~~l~~~~---------f~~l~~L~~L~L~~N-~l~~~-- 93 (170)
T 3g39_A 29 PTTTQVLYLYDN-QITKLEPGV-FDRLTQLTRLDLDNN-QLTVLPAGV---------FDKLTQLTQLSLNDN-QLKSI-- 93 (170)
T ss_dssp CTTCSEEECCSS-CCCCCCTTT-TTTCTTCSEEECCSS-CCCCCCTTT---------TTTCTTCCEEECCSS-CCCCC--
T ss_pred CCCCcEEEcCCC-cCCccChhh-hcCcccCCEEECCCC-CcCccChhh---------ccCCCCCCEEECCCC-ccCEe--
Confidence 356666666666 455543332 566666666666664 344443311 244666666666654 34444
Q ss_pred CCCccccCCCcceEeEecC
Q 040122 157 FTGNIIELPKLEYLIIENC 175 (388)
Q Consensus 157 ~~~~~~~l~~L~~L~l~~c 175 (388)
+...+..+++|++|++.++
T Consensus 94 ~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 94 PRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CTTTTTTCTTCCEEECCSS
T ss_pred CHHHhcCCCCCCEEEeCCC
Confidence 2222445666666666664
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.30 E-value=3.2e-06 Score=69.39 Aligned_cols=83 Identities=20% Similarity=0.198 Sum_probs=42.4
Q ss_pred CCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccCC
Q 040122 78 NNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNF 157 (388)
Q Consensus 78 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 157 (388)
++|++|++++| .+..+++.. +.++++|++|++++| .+..++... +..+++|+.|+++++ .+..+ +
T Consensus 33 ~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~i~~~~---------~~~l~~L~~L~L~~N-~l~~l--~ 97 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLEPGV-FDHLVNLQQLYFNSN-KLTAIPTGV---------FDKLTQLTQLDLNDN-HLKSI--P 97 (174)
T ss_dssp TTCSEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCCCCTTT---------TTTCTTCCEEECCSS-CCCCC--C
T ss_pred CCCcEEEeCCC-CccccCHHH-hcCCcCCCEEECCCC-CCCccChhH---------hCCcchhhEEECCCC-cccee--C
Confidence 56666666665 455433322 556666666666664 344443210 234566666666554 23443 2
Q ss_pred CCccccCCCcceEeEecC
Q 040122 158 TGNIIELPKLEYLIIENC 175 (388)
Q Consensus 158 ~~~~~~l~~L~~L~l~~c 175 (388)
...+..+++|++|++.++
T Consensus 98 ~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 98 RGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp TTTTTTCTTCSEEECCSS
T ss_pred HHHhccccCCCEEEeCCC
Confidence 222445566666666554
No 144
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.13 E-value=2.1e-06 Score=79.14 Aligned_cols=41 Identities=12% Similarity=0.060 Sum_probs=23.4
Q ss_pred CCCCcceEEecCCCCcceecccCch-hHhhhccccEEEEecCC
Q 040122 222 AFPQLGNLRLSGLHKVQHLWKENDE-SNKAFANLERLEISECS 263 (388)
Q Consensus 222 ~~~~L~~L~l~~~~~l~~~~~~~~~-~~~~~~~L~~L~i~~~~ 263 (388)
.+++|++|+++. +.+++.....+. .+..+++|+.|++++|.
T Consensus 277 ~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 277 ILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp SGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred cCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 467788888865 345442111100 11456788888887774
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.10 E-value=2.2e-06 Score=78.94 Aligned_cols=171 Identities=16% Similarity=0.073 Sum_probs=76.6
Q ss_pred cccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEeccc-ccccccccCCCCcceEEecCCCCcce
Q 040122 161 IIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVANQI-QHLFDEKVAFPQLGNLRLSGLHKVQH 239 (388)
Q Consensus 161 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~ 239 (388)
+..+++|+.|.+.+.. .......-.. ...-..-+..+|+|+.|++.+.. ..++. + ..++|++|++..|. +..
T Consensus 135 ~~~l~~L~~L~l~~~~-~e~~~is~~~---~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~-l~~ 207 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDID-FEEQEISWIE---QVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGG-LPD 207 (362)
T ss_dssp HHHHTTCSEEEECCCC-TTTCCGGGCB---CCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSB-CCH
T ss_pred hhhcchhhheeecCcc-hhhccccccc---ccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCC-CCh
Confidence 4568899999886631 1110000000 00000014566788888877631 12222 2 26777777776543 222
Q ss_pred ecccCchhHhhhccccEEEEecCC-------CcccccCCc--cccCCCCEEeeccCcCcccccchhh--hcCccccceee
Q 040122 240 LWKENDESNKAFANLERLEISECS-------KLQKLVPPS--WHLENLEALKVSKCHELINVLTLSA--SKNLVNLGRMM 308 (388)
Q Consensus 240 ~~~~~~~~~~~~~~L~~L~i~~~~-------~~~~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~--~~~l~~L~~L~ 308 (388)
-....+ ....+++|+.|+++.+. .+..+...+ ..+|+|+.|++.+|. +.+.....+ ...+++|+.|+
T Consensus 208 ~~l~~l-~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~Ld 285 (362)
T 2ra8_A 208 SVVEDI-LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMD 285 (362)
T ss_dssp HHHHHH-HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEE
T ss_pred HHHHHH-HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEE
Confidence 110000 00245777777775311 111111111 346777777777653 222111111 13456777777
Q ss_pred EccccccchhhcccccccCCccccccccceEecccC
Q 040122 309 IADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCL 344 (388)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 344 (388)
++.|. +++.... .+ ......+++|+.|++++|
T Consensus 286 Ls~n~-L~d~G~~--~L-~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 286 ISAGV-LTDEGAR--LL-LDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp CCSSC-CBHHHHH--HH-HTTHHHHTTCSEEECCSB
T ss_pred CCCCC-CChHHHH--HH-HhhcccCCcceEEECCCC
Confidence 76543 3321000 00 001124567777777665
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.05 E-value=1.5e-05 Score=65.02 Aligned_cols=60 Identities=22% Similarity=0.252 Sum_probs=25.3
Q ss_pred hhccccEEEEecCCCcccccCC-ccccCCCCEEeeccCcCcccccchhhhcCccccceeeEccc
Q 040122 250 AFANLERLEISECSKLQKLVPP-SWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADC 312 (388)
Q Consensus 250 ~~~~L~~L~i~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 312 (388)
.+++|++|+++++. +..++.. +..+++|++|+++++ .++.++.. ....+++|++|++++|
T Consensus 52 ~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 52 RLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRG-AFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS
T ss_pred CcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCC-ccCEeCHH-HhcCCCCCCEEEeCCC
Confidence 34444444444442 2222222 244455555555543 33333222 1234455555555544
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.03 E-value=1.9e-05 Score=64.78 Aligned_cols=60 Identities=20% Similarity=0.209 Sum_probs=25.3
Q ss_pred hhccccEEEEecCCCcccccCC-ccccCCCCEEeeccCcCcccccchhhhcCccccceeeEccc
Q 040122 250 AFANLERLEISECSKLQKLVPP-SWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADC 312 (388)
Q Consensus 250 ~~~~L~~L~i~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 312 (388)
.+++|++|+++++. +..++.. +..+++|++|+++++ .++.++.. ....+++|++|++++|
T Consensus 55 ~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 55 HLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRG-AFDNLKSLTHIYLYNN 115 (174)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCSEEECCSS
T ss_pred CCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC-ccceeCHH-HhccccCCCEEEeCCC
Confidence 34444444444442 2333322 234455555555443 33333221 1234455555555544
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.98 E-value=0.00042 Score=64.54 Aligned_cols=259 Identities=11% Similarity=0.085 Sum_probs=117.8
Q ss_pred cccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccC------
Q 040122 75 RFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDL------ 148 (388)
Q Consensus 75 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~------ 148 (388)
..|.+|+++.+.. +++.+ +...+.+|++|+.+++.. .+..+++.. +..+.+|+.+.+...
T Consensus 68 ~~c~~L~~i~lp~--~i~~I-~~~aF~~c~~L~~i~lp~--~l~~I~~~a---------F~~c~~L~~i~~p~~l~~i~~ 133 (394)
T 4fs7_A 68 QGCRKVTEIKIPS--TVREI-GEFAFENCSKLEIINIPD--SVKMIGRCT---------FSGCYALKSILLPLMLKSIGV 133 (394)
T ss_dssp TTCTTEEEEECCT--TCCEE-CTTTTTTCTTCCEECCCT--TCCEECTTT---------TTTCTTCCCCCCCTTCCEECT
T ss_pred hCCCCceEEEeCC--CccCc-chhHhhCCCCCcEEEeCC--CceEccchh---------hcccccchhhcccCceeeecc
Confidence 3467777777753 35553 333367777777777754 244443321 233444444433211
Q ss_pred --------------cccccccCCCCccccCCCcceEeEecCCCcccccCCcceeeecccCCCccccccCCceEEEecccc
Q 040122 149 --------------PKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLHMTADNKEPQKLKSEENLLVANQIQ 214 (388)
Q Consensus 149 --------------~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~l~~l~~L~~L~l~~~~~ 214 (388)
.....+ +..+...|++|+.+.+.+ .+..++... +.++++|+.+.+.....
T Consensus 134 ~aF~~~~~~~~~~~~~~~~i--~~~aF~~c~~L~~i~l~~--~~~~I~~~~------------F~~c~~L~~i~l~~~~~ 197 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEGVTVI--GDEAFATCESLEYVSLPD--SMETLHNGL------------FSGCGKLKSIKLPRNLK 197 (394)
T ss_dssp TTTTTCCCSEEECCTTCCEE--CTTTTTTCTTCCEEECCT--TCCEECTTT------------TTTCTTCCBCCCCTTCC
T ss_pred eeeecccccccccCcccccc--chhhhcccCCCcEEecCC--ccceecccc------------ccCCCCceEEEcCCCce
Confidence 011111 112234556666665543 223333222 55666677666655322
Q ss_pred ccc-ccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCccccc-CCccccCCCCEEeeccCcCcccc
Q 040122 215 HLF-DEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLV-PPSWHLENLEALKVSKCHELINV 292 (388)
Q Consensus 215 ~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~-~~~~~~~~L~~L~l~~c~~l~~~ 292 (388)
.+. .....++.|+.+.+.. .+..+.... .....|+.+.+... ...+. ..+..+..++.+.+... ...+
T Consensus 198 ~I~~~~F~~~~~L~~i~~~~--~~~~i~~~~----~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~--~~~i 267 (394)
T 4fs7_A 198 IIRDYCFAECILLENMEFPN--SLYYLGDFA----LSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNN--KLRI 267 (394)
T ss_dssp EECTTTTTTCTTCCBCCCCT--TCCEECTTT----TTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCT--TCEE
T ss_pred EeCchhhccccccceeecCC--CceEeehhh----cccCCCceEEECCC--ceecccccccccccceeEEcCCC--ccee
Confidence 221 2233455555555543 122222211 34466777777542 22221 23445567777766532 1111
Q ss_pred cch--------------------hhhcCccccceeeEccccccchhhcccccccCCccccccccceEecccCCCcceecC
Q 040122 293 LTL--------------------SASKNLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTSFCL 352 (388)
Q Consensus 293 ~~~--------------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 352 (388)
... .....+.+|+.+.+... ++.+.. .....+.+|+.+.+.. +++.+..
T Consensus 268 ~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~--i~~I~~-------~aF~~c~~L~~i~lp~--~v~~I~~ 336 (394)
T 4fs7_A 268 GGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS--VKFIGE-------EAFESCTSLVSIDLPY--LVEEIGK 336 (394)
T ss_dssp CSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT--CCEECT-------TTTTTCTTCCEECCCT--TCCEECT
T ss_pred eccccccccccceeccCceeeccccccccccccccccccc--cceech-------hhhcCCCCCCEEEeCC--cccEEhH
Confidence 110 01123444555444321 222211 0113456777777642 3555544
Q ss_pred CCccccCCCcceEEeccCCCccccc-CCCCCCCCCC
Q 040122 353 GNYALEFPSLKQVVVRQCPKMKIFS-QGLLDTPMLN 387 (388)
Q Consensus 353 ~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~~~~L~ 387 (388)
.+. ..|.+|+.+.+... ++.+. ....++++|+
T Consensus 337 ~aF-~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 337 RSF-RGCTSLSNINFPLS--LRKIGANAFQGCINLK 369 (394)
T ss_dssp TTT-TTCTTCCEECCCTT--CCEECTTTBTTCTTCC
T ss_pred Hhc-cCCCCCCEEEECcc--ccEehHHHhhCCCCCC
Confidence 431 13678888877542 55554 2344455554
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.89 E-value=2.7e-05 Score=71.27 Aligned_cols=95 Identities=19% Similarity=0.181 Sum_probs=67.4
Q ss_pred hHHHHhhhccCCCCcceEEecCccccceeccccccCccccCCccEEEecCCCCCcccCChhhhhcCCCCcEEEecccccc
Q 040122 38 TIQKCYDEKIGFLDINRLQLSHFPRLQEIWHGQALPVRFFNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCDSL 117 (388)
Q Consensus 38 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 117 (388)
.+..+|. +..+++|++|+++++..+..++... + ..+++|+.|+|++| .+..+++.. +.++++|++|+|++| .+
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~-~--~~l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~l~~N-~l 92 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRD-L--RGLGELRNLTIVKS-GLRFVAPDA-FHFTPRLSRLNLSFN-AL 92 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGG-S--CSCCCCSEEECCSS-CCCEECTTG-GGSCSCCCEEECCSS-CC
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhH-h--ccccCCCEEECCCC-ccceeCHHH-hcCCcCCCEEeCCCC-cc
Confidence 3455777 8888899999998644577655433 2 56899999999988 677765544 789999999999985 55
Q ss_pred ceecccccccccccccCCcCccccEeecccCc
Q 040122 118 EEVLHLEELSAKEEHIGPLFPRLLSLKLIDLP 149 (388)
Q Consensus 118 ~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 149 (388)
..++... +..++ |+.|++.+++
T Consensus 93 ~~~~~~~---------~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 93 ESLSWKT---------VQGLS-LQELVLSGNP 114 (347)
T ss_dssp SCCCSTT---------TCSCC-CCEEECCSSC
T ss_pred ceeCHHH---------cccCC-ceEEEeeCCC
Confidence 5654421 12233 8888888653
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.84 E-value=0.0023 Score=59.44 Aligned_cols=104 Identities=13% Similarity=0.200 Sum_probs=50.0
Q ss_pred hhhccccEEEEecCCCcccc-cCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEccccccchhhcccccccC
Q 040122 249 KAFANLERLEISECSKLQKL-VPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKMIEQIIQLQVGEEA 327 (388)
Q Consensus 249 ~~~~~L~~L~i~~~~~~~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 327 (388)
..+..|+.+.+.+. ...+ ...+..+++|+.+.+.. .+..+.... ..+|.+|+.+.+.. .++.+.. .
T Consensus 262 ~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~a-F~~c~~L~~i~lp~--~v~~I~~---~--- 328 (394)
T 4gt6_A 262 DSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFSS--RITELPESV-FAGCISLKSIDIPE--GITQILD---D--- 328 (394)
T ss_dssp TTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECTTT-TTTCTTCCEEECCT--TCCEECT---T---
T ss_pred eecccccEEecccc--cceecCcccccccccccccCCC--cccccCcee-ecCCCCcCEEEeCC--cccEehH---h---
Confidence 34455555555332 1111 12334556666666642 344443322 24567777777643 1222211 0
Q ss_pred CccccccccceEecccCCCcceecCCCccccCCCcceEEecc
Q 040122 328 KDCNVFKELEYLGLDCLPSLTSFCLGNYALEFPSLKQVVVRQ 369 (388)
Q Consensus 328 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 369 (388)
....|.+|+.+.+-. +++.+...+. ..|.+|+.+++.+
T Consensus 329 -aF~~C~~L~~i~ip~--sv~~I~~~aF-~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 329 -AFAGCEQLERIAIPS--SVTKIPESAF-SNCTALNNIEYSG 366 (394)
T ss_dssp -TTTTCTTCCEEEECT--TCCBCCGGGG-TTCTTCCEEEESS
T ss_pred -HhhCCCCCCEEEECc--ccCEEhHhHh-hCCCCCCEEEECC
Confidence 113456777777632 3444443331 2367888877765
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.81 E-value=7.8e-07 Score=82.52 Aligned_cols=66 Identities=14% Similarity=0.021 Sum_probs=29.5
Q ss_pred CCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcccccccCCCCccccCCCcceEeEecC
Q 040122 103 LNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPKLKRFCNFTGNIIELPKLEYLIIENC 175 (388)
Q Consensus 103 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 175 (388)
+++|++|++++|. +...... .+. ..+....++|+.|+++++. ++..... .-...+++|++|++++|
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~-~l~---~~L~~~~~~L~~L~Ls~n~-l~~~~~~-~l~~~L~~L~~L~Ls~n 136 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCT-VVA---AVLGSGRHALDEVNLASCQ-LDPAGLR-TLLPVFLRARKLGLQLN 136 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHH-HHH---HHHSSCSSCEEEEECTTCC-CCHHHHH-HTHHHHHTEEEEECCSS
T ss_pred HhhCCEEEecCCC-CCHHHHH-HHH---HHHhhCCCCceEEEecCCC-CCHHHHH-HHHHHHHhccHhhcCCC
Confidence 4667777777754 2221110 000 0001123567777777663 2221000 00123456677777766
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.80 E-value=1.5e-06 Score=80.59 Aligned_cols=12 Identities=17% Similarity=0.119 Sum_probs=6.8
Q ss_pred CCCcceEeEecC
Q 040122 164 LPKLEYLIIENC 175 (388)
Q Consensus 164 l~~L~~L~l~~c 175 (388)
.++|++|++++|
T Consensus 154 ~~~L~~L~Ls~n 165 (372)
T 3un9_A 154 QCQITTLRLSNN 165 (372)
T ss_dssp TCCCCEEECCSS
T ss_pred CCccceeeCCCC
Confidence 455666666555
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.67 E-value=0.005 Score=57.15 Aligned_cols=79 Identities=14% Similarity=0.192 Sum_probs=40.1
Q ss_pred CCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccC-CccccCCCCEEeeccCcCcccccchhhhcC
Q 040122 222 AFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVP-PSWHLENLEALKVSKCHELINVLTLSASKN 300 (388)
Q Consensus 222 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 300 (388)
.+.+|+.+.+.+ .+..+....+ ..++.|+.+.+.. .+..++. .+..+.+|+.+.+.. .++.+....+ .+
T Consensus 263 ~c~~L~~i~lp~--~~~~I~~~aF---~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF-~~ 332 (394)
T 4gt6_A 263 SCAYLASVKMPD--SVVSIGTGAF---MNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAF-AG 332 (394)
T ss_dssp TCSSCCEEECCT--TCCEECTTTT---TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTT-TT
T ss_pred ecccccEEeccc--ccceecCccc---ccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHh-hC
Confidence 455666666643 2334443332 4556666666643 2333332 344556677776653 3444332222 45
Q ss_pred ccccceeeEc
Q 040122 301 LVNLGRMMIA 310 (388)
Q Consensus 301 l~~L~~L~l~ 310 (388)
|.+|+.+.+.
T Consensus 333 C~~L~~i~ip 342 (394)
T 4gt6_A 333 CEQLERIAIP 342 (394)
T ss_dssp CTTCCEEEEC
T ss_pred CCCCCEEEEC
Confidence 6667776664
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.65 E-value=0.0001 Score=67.41 Aligned_cols=83 Identities=20% Similarity=0.187 Sum_probs=44.0
Q ss_pred ccccCCceEEEec--cccccc-ccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccCCcccc
Q 040122 199 QKLKSEENLLVAN--QIQHLF-DEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVPPSWHL 275 (388)
Q Consensus 199 ~~l~~L~~L~l~~--~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~ 275 (388)
..+++|+.|++++ ....++ ..++.+++|+.|+|+++ .++.++...+ ..+++|+.|+++++. +..+|......
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~---~~l~~L~~L~l~~N~-l~~~~~~~~~~ 102 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAF---HFTPRLSRLNLSFNA-LESLSWKTVQG 102 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGG---GSCSCCCEEECCSSC-CSCCCSTTTCS
T ss_pred CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHh---cCCcCCCEEeCCCCc-cceeCHHHccc
Confidence 4556666666653 333333 34556666666666663 4555554432 455666666666653 33444333222
Q ss_pred CCCCEEeeccC
Q 040122 276 ENLEALKVSKC 286 (388)
Q Consensus 276 ~~L~~L~l~~c 286 (388)
..|+.|++.++
T Consensus 103 ~~L~~l~l~~N 113 (347)
T 2ifg_A 103 LSLQELVLSGN 113 (347)
T ss_dssp CCCCEEECCSS
T ss_pred CCceEEEeeCC
Confidence 23666666653
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.89 E-value=0.12 Score=47.43 Aligned_cols=103 Identities=11% Similarity=0.079 Sum_probs=44.8
Q ss_pred ccccCCceEEEecccccc-cccccCCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCcccccC-CccccC
Q 040122 199 QKLKSEENLLVANQIQHL-FDEKVAFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLVP-PSWHLE 276 (388)
Q Consensus 199 ~~l~~L~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~-~~~~~~ 276 (388)
..+.+|+.+.+......+ ......+.+|+.+.+-. .++.+....+ ..+..|+.+.+.. .+..++. .+..+.
T Consensus 214 ~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~--~v~~I~~~aF---~~~~~l~~i~l~~--~i~~i~~~aF~~c~ 286 (379)
T 4h09_A 214 SYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPK--NVTSIGSFLL---QNCTALKTLNFYA--KVKTVPYLLCSGCS 286 (379)
T ss_dssp TTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECT--TCCEECTTTT---TTCTTCCEEEECC--CCSEECTTTTTTCT
T ss_pred ccccccceeeeccceeEEccccccCCccceEEEcCC--CccEeCcccc---ceeehhccccccc--cceecccccccccc
Confidence 344455555544321111 11223345555555543 2444443322 4455556555543 2222222 234555
Q ss_pred CCCEEeeccCcCcccccchhhhcCccccceeeEc
Q 040122 277 NLEALKVSKCHELINVLTLSASKNLVNLGRMMIA 310 (388)
Q Consensus 277 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 310 (388)
+|+.+.+.+. .++.+.... ..+|.+|+.+.+.
T Consensus 287 ~L~~i~l~~~-~i~~I~~~a-F~~c~~L~~i~lp 318 (379)
T 4h09_A 287 NLTKVVMDNS-AIETLEPRV-FMDCVKLSSVTLP 318 (379)
T ss_dssp TCCEEEECCT-TCCEECTTT-TTTCTTCCEEECC
T ss_pred cccccccccc-ccceehhhh-hcCCCCCCEEEcC
Confidence 6666666532 233332222 2455666666653
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.31 E-value=0.0048 Score=53.85 Aligned_cols=64 Identities=16% Similarity=0.098 Sum_probs=34.6
Q ss_pred ccCCccEEEecCCCCCcccCCh-hhhhcCCCCcEEEeccccccceecccccccccccccCCcCccccEeecccCcc
Q 040122 76 FFNNLAELVVDDSTNMSSAIPA-NLLRCLNNLEWLAVRNCDSLEEVLHLEELSAKEEHIGPLFPRLLSLKLIDLPK 150 (388)
Q Consensus 76 ~~~~L~~L~l~~~~~l~~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 150 (388)
.+++|++|+|++| .+..+.+. ..+..+++|++|++++| .+..+..+.. +..+ +|+.|++.+++-
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~--------l~~l-~L~~L~L~~Npl 232 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDK--------IKGL-KLEELWLDGNSL 232 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGG--------GTTS-CCSEEECTTSTT
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhh--------cccC-CcceEEccCCcC
Confidence 4667777777776 45543221 12456777777777764 3333322211 1223 677777766653
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.24 E-value=0.68 Score=42.19 Aligned_cols=126 Identities=13% Similarity=0.115 Sum_probs=70.0
Q ss_pred CCCCcceEEecCCCCcceecccCchhHhhhccccEEEEecCCCccccc-CCccccCCCCEEeeccCcCcccccchhhhcC
Q 040122 222 AFPQLGNLRLSGLHKVQHLWKENDESNKAFANLERLEISECSKLQKLV-PPSWHLENLEALKVSKCHELINVLTLSASKN 300 (388)
Q Consensus 222 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 300 (388)
.+.+|+.+.+.. .++.+....+ ..+..|+.+.+... +..+. ..+..+.+|+.+.+.. .+..+... ....
T Consensus 215 ~~~~l~~i~~~~--~~~~i~~~~f---~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~-aF~~ 284 (379)
T 4h09_A 215 YGKNLKKITITS--GVTTLGDGAF---YGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA--KVKTVPYL-LCSG 284 (379)
T ss_dssp TCSSCSEEECCT--TCCEECTTTT---TTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC--CCSEECTT-TTTT
T ss_pred cccccceeeecc--ceeEEccccc---cCCccceEEEcCCC--ccEeCccccceeehhccccccc--cceecccc-cccc
Confidence 345666666643 3455544333 56677888877653 33332 2345677888888864 34444333 2367
Q ss_pred ccccceeeEccccccchhhcccccccCCccccccccceEecccCCCcceecCCCccccCCCcceEEec
Q 040122 301 LVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELEYLGLDCLPSLTSFCLGNYALEFPSLKQVVVR 368 (388)
Q Consensus 301 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~ 368 (388)
|.+|+.+.+.++ .++.+.. . ....+.+|+.+.+-. +++.+...+. ..|.+|+.+.+.
T Consensus 285 c~~L~~i~l~~~-~i~~I~~---~----aF~~c~~L~~i~lp~--~l~~I~~~aF-~~C~~L~~i~ip 341 (379)
T 4h09_A 285 CSNLTKVVMDNS-AIETLEP---R----VFMDCVKLSSVTLPT--ALKTIQVYAF-KNCKALSTISYP 341 (379)
T ss_dssp CTTCCEEEECCT-TCCEECT---T----TTTTCTTCCEEECCT--TCCEECTTTT-TTCTTCCCCCCC
T ss_pred cccccccccccc-ccceehh---h----hhcCCCCCCEEEcCc--cccEEHHHHh-hCCCCCCEEEEC
Confidence 888999888653 2333321 1 113456788777742 3555544331 125677776664
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.97 E-value=0.0076 Score=52.57 Aligned_cols=63 Identities=21% Similarity=0.227 Sum_probs=29.3
Q ss_pred hhccccEEEEecCCCcc--cccCCccccCCCCEEeeccCcCcccccchhhhcCccccceeeEccccc
Q 040122 250 AFANLERLEISECSKLQ--KLVPPSWHLENLEALKVSKCHELINVLTLSASKNLVNLGRMMIADCKM 314 (388)
Q Consensus 250 ~~~~L~~L~i~~~~~~~--~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 314 (388)
.+++|+.|+++++.... .++..+..+++|+.|+++++ .++++........+ +|++|++.+|+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Npl 232 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNSL 232 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTSTT
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCcC
Confidence 34455555555543221 22333345566666666653 34443211111222 666666666653
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.82 E-value=0.0041 Score=51.11 Aligned_cols=126 Identities=13% Similarity=0.068 Sum_probs=71.6
Q ss_pred HHHhhhccCCCCcceEEecCccccceecccc-ccCccccCCccEEEecCCCCCcccCC---hhhhhcCCCCcEEEecccc
Q 040122 40 QKCYDEKIGFLDINRLQLSHFPRLQEIWHGQ-ALPVRFFNNLAELVVDDSTNMSSAIP---ANLLRCLNNLEWLAVRNCD 115 (388)
Q Consensus 40 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~l~~L~~L~l~~~~ 115 (388)
+.+...+...++|++|+++++..+.+..... .-.....++|++|++++| .+++.-. ...+...++|++|++++|.
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 3455566677999999999883365321111 000134688999999988 4543111 1125566889999999864
Q ss_pred ccceec--ccccccccccccCCcCccccEeec--ccCccccccc--CCCCccccCCCcceEeEecC
Q 040122 116 SLEEVL--HLEELSAKEEHIGPLFPRLLSLKL--IDLPKLKRFC--NFTGNIIELPKLEYLIIENC 175 (388)
Q Consensus 116 ~l~~i~--~~~~~~~~~~~~~~~~~~L~~L~l--~~~~~l~~~~--~~~~~~~~l~~L~~L~l~~c 175 (388)
++.-. .+.. .+...++|++|++ +++. ++.-. .....+...++|++|++.+|
T Consensus 105 -i~~~g~~~l~~-------~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 105 -ISGSGILALVE-------ALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp -CCHHHHHHHHH-------GGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred -CCHHHHHHHHH-------HHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 22210 0000 0345678999999 5443 33210 00011445678888888876
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.45 E-value=0.0049 Score=50.68 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=11.1
Q ss_pred cccCCCcceEeEecCCCcc
Q 040122 161 IIELPKLEYLIIENCPDME 179 (388)
Q Consensus 161 ~~~l~~L~~L~l~~c~~l~ 179 (388)
+...++|++|++++|..+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~ 50 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIP 50 (185)
T ss_dssp HTTCTTCCEEECTTCTTCC
T ss_pred HhcCCCCCEEEecCCCCCC
Confidence 4456667777776653333
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=88.08 E-value=0.56 Score=35.68 Aligned_cols=37 Identities=22% Similarity=0.212 Sum_probs=25.5
Q ss_pred cCCccEEEecCCCCCcccCChhhhhcCCCCcEEEecccc
Q 040122 77 FNNLAELVVDDSTNMSSAIPANLLRCLNNLEWLAVRNCD 115 (388)
Q Consensus 77 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~ 115 (388)
.++|++|+|++| .++.++ ...+..+++|++|+|++|+
T Consensus 30 p~~l~~L~Ls~N-~l~~l~-~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 30 PVDTTELVLTGN-NLTALP-PGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CTTCSEEECTTS-CCSSCC-TTTGGGCTTCCEEECCSSC
T ss_pred CcCCCEEECCCC-cCCccC-hhhhhhccccCEEEecCCC
Confidence 456788888777 566643 3447777888888887764
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=73.71 E-value=3.8 Score=30.88 Aligned_cols=34 Identities=12% Similarity=0.028 Sum_probs=14.9
Q ss_pred CCCEEeeccCcCcccccchhhhcCccccceeeEccc
Q 040122 277 NLEALKVSKCHELINVLTLSASKNLVNLGRMMIADC 312 (388)
Q Consensus 277 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 312 (388)
+|+.|+|+++ .++.++... ...+++|+.|++.+|
T Consensus 32 ~l~~L~Ls~N-~l~~l~~~~-f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGN-NLTALPPGL-LDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTS-CCSSCCTTT-GGGCTTCCEEECCSS
T ss_pred CCCEEECCCC-cCCccChhh-hhhccccCEEEecCC
Confidence 4555555443 344433222 234445555555444
No 163
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=38.28 E-value=47 Score=23.45 Aligned_cols=14 Identities=14% Similarity=0.150 Sum_probs=6.8
Q ss_pred cccccCCceEEEec
Q 040122 198 PQKLKSEENLLVAN 211 (388)
Q Consensus 198 l~~l~~L~~L~l~~ 211 (388)
+.+|.+|+.+.+.+
T Consensus 39 F~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 39 FSGCTALEKLILTG 52 (100)
T ss_dssp STTCTTCCCEEECC
T ss_pred HhccCCccEEEEcC
Confidence 44455555555443
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=31.64 E-value=19 Score=29.37 Aligned_cols=10 Identities=10% Similarity=0.358 Sum_probs=5.1
Q ss_pred CCcceEEecC
Q 040122 224 PQLGNLRLSG 233 (388)
Q Consensus 224 ~~L~~L~l~~ 233 (388)
+.|+.|++++
T Consensus 70 ~~L~~L~L~~ 79 (197)
T 1pgv_A 70 KHIEKFSLAN 79 (197)
T ss_dssp SCCCEEECTT
T ss_pred CCcCEEEccC
Confidence 4455555554
Done!