Query 040125
Match_columns 514
No_of_seqs 159 out of 693
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 05:22:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040125.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040125hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 1E-108 3E-113 862.4 38.3 364 141-513 1-374 (374)
2 PRK15451 tRNA cmo(5)U34 methyl 97.1 0.035 7.6E-07 55.3 18.2 193 228-468 33-227 (247)
3 TIGR00740 methyltransferase, p 96.2 0.24 5.2E-06 48.8 16.3 106 253-382 53-159 (239)
4 TIGR02752 MenG_heptapren 2-hep 95.5 0.96 2.1E-05 43.9 17.0 179 243-469 35-216 (231)
5 PF01209 Ubie_methyltran: ubiE 94.6 0.88 1.9E-05 45.4 13.9 180 244-470 38-219 (233)
6 TIGR02716 C20_methyl_CrtF C-20 92.7 2.2 4.9E-05 43.7 13.4 118 242-386 138-257 (306)
7 PLN02233 ubiquinone biosynthes 92.7 13 0.00027 37.6 19.5 133 240-397 60-194 (261)
8 PF12847 Methyltransf_18: Meth 92.1 1.1 2.5E-05 37.9 8.9 105 256-383 4-110 (112)
9 COG2226 UbiE Methylase involve 91.7 16 0.00035 36.9 17.9 190 230-468 27-221 (238)
10 PRK06202 hypothetical protein; 91.6 4.8 0.0001 39.4 13.9 117 243-383 50-166 (232)
11 PF13489 Methyltransf_23: Meth 91.2 2.7 5.9E-05 37.6 10.8 98 251-387 20-119 (161)
12 PF13847 Methyltransf_31: Meth 90.0 4.3 9.2E-05 37.0 11.1 108 252-385 2-112 (152)
13 TIGR01934 MenG_MenH_UbiE ubiqu 86.7 29 0.00063 32.9 18.8 118 240-385 26-145 (223)
14 PTZ00098 phosphoethanolamine N 86.2 36 0.00079 34.3 16.0 114 239-382 38-154 (263)
15 PRK08317 hypothetical protein; 85.2 35 0.00076 32.4 16.9 53 245-308 11-63 (241)
16 PLN02336 phosphoethanolamine N 85.1 42 0.0009 36.6 16.9 114 241-383 254-368 (475)
17 PF13649 Methyltransf_25: Meth 84.9 5.6 0.00012 33.5 8.1 94 257-373 1-95 (101)
18 PLN02585 magnesium protoporphy 81.4 48 0.001 34.8 14.9 104 253-383 144-249 (315)
19 TIGR03438 probable methyltrans 81.3 24 0.00052 36.4 12.5 120 245-385 57-178 (301)
20 TIGR00477 tehB tellurite resis 81.1 24 0.00052 33.8 11.7 111 240-379 17-128 (195)
21 PLN02336 phosphoethanolamine N 80.8 27 0.00059 38.0 13.4 114 243-383 27-141 (475)
22 PF02353 CMAS: Mycolic acid cy 80.2 18 0.00039 37.1 11.0 113 243-383 52-165 (273)
23 PLN02396 hexaprenyldihydroxybe 79.7 46 0.00099 35.0 14.1 100 254-383 132-234 (322)
24 PF00891 Methyltransf_2: O-met 78.8 33 0.00071 33.7 12.1 110 243-387 90-203 (241)
25 COG2230 Cfa Cyclopropane fatty 78.7 39 0.00085 35.1 12.9 108 242-377 61-169 (283)
26 PRK01683 trans-aconitate 2-met 77.5 26 0.00057 34.6 11.1 111 242-384 20-130 (258)
27 PRK06922 hypothetical protein; 76.9 1.1E+02 0.0024 35.6 16.9 110 254-384 419-538 (677)
28 PRK14103 trans-aconitate 2-met 76.3 30 0.00065 34.4 11.1 105 244-383 20-125 (255)
29 PRK09489 rsmC 16S ribosomal RN 73.8 55 0.0012 34.7 12.8 116 243-383 186-302 (342)
30 PF08241 Methyltransf_11: Meth 73.5 17 0.00037 29.1 7.2 74 290-381 20-94 (95)
31 PRK11036 putative S-adenosyl-L 73.3 34 0.00074 34.0 10.7 112 244-382 36-147 (255)
32 smart00138 MeTrc Methyltransfe 72.8 9.6 0.00021 38.7 6.7 54 251-308 97-151 (264)
33 PRK00216 ubiE ubiquinone/menaq 71.6 96 0.0021 29.6 17.5 115 245-384 43-159 (239)
34 PF09243 Rsm22: Mitochondrial 71.3 32 0.0007 35.1 10.1 139 237-401 13-156 (274)
35 PRK11207 tellurite resistance 71.2 71 0.0015 30.6 12.0 111 241-380 18-130 (197)
36 PF03291 Pox_MCEL: mRNA cappin 70.0 37 0.00079 35.9 10.4 119 253-386 62-189 (331)
37 PRK12335 tellurite resistance 70.0 54 0.0012 33.4 11.5 109 242-379 109-218 (287)
38 COG0052 RpsB Ribosomal protein 67.1 2.4 5.3E-05 43.0 0.9 112 252-387 35-168 (252)
39 TIGR02081 metW methionine bios 65.9 78 0.0017 30.0 11.0 22 449-470 145-166 (194)
40 PRK10909 rsmD 16S rRNA m(2)G96 64.3 1E+02 0.0022 30.2 11.5 105 255-389 55-164 (199)
41 PRK05785 hypothetical protein; 64.1 1.4E+02 0.0031 29.3 12.8 93 254-383 52-145 (226)
42 TIGR02021 BchM-ChlM magnesium 63.5 1.1E+02 0.0023 29.5 11.7 115 237-382 37-156 (219)
43 smart00650 rADc Ribosomal RNA 62.5 1.1E+02 0.0025 28.3 11.2 53 243-309 3-55 (169)
44 TIGR03439 methyl_EasF probable 61.9 1.3E+02 0.0029 31.7 12.6 138 255-410 78-234 (319)
45 PF13679 Methyltransf_32: Meth 58.5 33 0.00071 31.2 6.6 50 249-308 21-72 (141)
46 PLN02244 tocopherol O-methyltr 58.2 1.5E+02 0.0032 31.2 12.3 102 253-383 118-223 (340)
47 PF03848 TehB: Tellurite resis 55.9 2.1E+02 0.0045 28.1 12.9 111 243-382 20-131 (192)
48 PRK11705 cyclopropane fatty ac 55.3 1.4E+02 0.0031 32.0 11.8 108 243-382 157-265 (383)
49 TIGR03587 Pse_Me-ase pseudamin 52.5 1.7E+02 0.0036 28.5 10.8 100 256-386 46-145 (204)
50 PRK15001 SAM-dependent 23S rib 51.7 1.9E+02 0.0041 31.3 12.0 121 244-384 219-340 (378)
51 PLN02232 ubiquinone biosynthes 50.6 2.1E+02 0.0045 26.5 12.6 81 293-385 1-83 (160)
52 PRK00274 ksgA 16S ribosomal RN 48.8 84 0.0018 31.9 8.5 67 229-309 13-84 (272)
53 PRK07580 Mg-protoporphyrin IX 48.2 2.5E+02 0.0055 26.8 11.4 98 253-381 63-162 (230)
54 TIGR00091 tRNA (guanine-N(7)-) 47.7 1.1E+02 0.0024 29.2 8.6 115 254-385 17-133 (194)
55 TIGR00138 gidB 16S rRNA methyl 47.4 2.6E+02 0.0056 26.6 12.2 97 255-383 44-141 (181)
56 COG2227 UbiG 2-polyprenyl-3-me 45.8 76 0.0017 32.4 7.4 99 253-381 59-158 (243)
57 TIGR01626 ytfJ_HI0045 conserve 45.6 73 0.0016 31.0 7.0 114 253-374 59-182 (184)
58 PRK15068 tRNA mo(5)U34 methylt 45.1 2.1E+02 0.0046 29.9 11.0 113 244-383 113-225 (322)
59 PF02056 Glyco_hydro_4: Family 44.9 78 0.0017 30.8 7.1 59 269-328 9-67 (183)
60 TIGR02072 BioC biotin biosynth 44.0 2E+02 0.0044 27.2 9.9 99 254-383 35-134 (240)
61 COG4106 Tam Trans-aconitate me 43.4 1.1E+02 0.0024 31.1 8.0 111 249-391 26-136 (257)
62 TIGR02469 CbiT precorrin-6Y C5 42.8 95 0.0021 26.2 6.7 44 256-311 22-65 (124)
63 PRK10258 biotin biosynthesis p 42.7 3.3E+02 0.0071 26.7 11.4 54 241-308 30-83 (251)
64 PRK11873 arsM arsenite S-adeno 42.3 3.6E+02 0.0078 26.8 11.8 101 255-383 79-183 (272)
65 COG2242 CobL Precorrin-6B meth 41.4 40 0.00086 33.1 4.5 55 247-313 28-82 (187)
66 PRK04148 hypothetical protein; 40.0 1.7E+02 0.0038 27.1 8.2 69 245-326 8-111 (134)
67 PRK13255 thiopurine S-methyltr 38.4 4E+02 0.0087 26.2 11.9 37 254-304 38-74 (218)
68 PF07521 RMMBL: RNA-metabolisi 36.5 68 0.0015 23.6 4.1 39 343-383 1-39 (43)
69 COG1341 Predicted GTPase or GT 35.9 2.1E+02 0.0046 31.3 9.3 82 343-436 173-254 (398)
70 smart00828 PKS_MT Methyltransf 35.2 2.9E+02 0.0062 26.5 9.5 99 256-381 2-101 (224)
71 PRK13944 protein-L-isoaspartat 35.0 4.2E+02 0.0091 25.5 11.7 56 244-310 63-118 (205)
72 PRK00107 gidB 16S rRNA methylt 34.9 4.2E+02 0.0092 25.5 13.3 97 254-383 46-144 (187)
73 COG0123 AcuC Deacetylases, inc 33.3 34 0.00073 36.4 2.8 31 241-275 144-174 (340)
74 TIGR00537 hemK_rel_arch HemK-r 33.1 4E+02 0.0087 24.7 12.5 49 256-322 22-70 (179)
75 TIGR00452 methyltransferase, p 32.5 5.6E+02 0.012 26.9 11.7 113 244-383 112-224 (314)
76 COG1500 Predicted exosome subu 32.0 1.2E+02 0.0026 30.7 6.2 75 404-480 73-151 (234)
77 PRK03522 rumB 23S rRNA methylu 31.7 5.6E+02 0.012 26.4 11.5 101 254-385 174-275 (315)
78 KOG3820 Aromatic amino acid hy 31.0 99 0.0022 33.8 5.8 78 256-333 333-431 (461)
79 TIGR02085 meth_trns_rumB 23S r 29.5 4.6E+02 0.0099 28.0 10.6 99 256-385 236-335 (374)
80 TIGR01716 RGG_Cterm transcript 29.3 91 0.002 29.9 4.9 54 140-193 126-180 (220)
81 PTZ00063 histone deacetylase; 28.9 40 0.00086 37.2 2.5 29 244-274 156-184 (436)
82 PRK00811 spermidine synthase; 28.6 6.4E+02 0.014 25.7 11.2 109 256-384 79-191 (283)
83 PRK13168 rumA 23S rRNA m(5)U19 27.9 7.6E+02 0.016 26.9 12.2 109 247-385 291-401 (443)
84 PRK03646 dadX alanine racemase 27.8 1.3E+02 0.0029 31.8 6.2 53 254-314 118-177 (355)
85 PRK14896 ksgA 16S ribosomal RN 27.3 3.2E+02 0.007 27.3 8.6 57 239-309 11-71 (258)
86 PF07088 GvpD: GvpD gas vesicl 26.9 1.7E+02 0.0038 32.3 6.8 40 271-323 114-153 (484)
87 PRK11088 rrmA 23S rRNA methylt 26.8 3.6E+02 0.0077 27.1 8.9 81 216-307 50-130 (272)
88 TIGR00755 ksgA dimethyladenosi 26.3 6.5E+02 0.014 24.9 10.6 52 243-308 19-70 (253)
89 COG4952 Predicted sugar isomer 26.2 3.4E+02 0.0074 28.8 8.5 69 364-438 158-231 (430)
90 cd05298 GH4_GlvA_pagL_like Gly 25.9 1.5E+02 0.0033 32.6 6.4 62 273-335 14-75 (437)
91 PF11455 DUF3018: Protein of 25.4 38 0.00081 27.8 1.2 21 450-470 3-23 (65)
92 PRK00121 trmB tRNA (guanine-N( 25.2 6.1E+02 0.013 24.3 10.3 111 253-382 40-154 (202)
93 PF08242 Methyltransf_12: Meth 24.7 28 0.00062 28.9 0.4 23 289-311 20-42 (99)
94 PF05175 MTS: Methyltransferas 24.3 2.3E+02 0.0049 26.4 6.5 116 241-380 19-136 (170)
95 TIGR01983 UbiG ubiquinone bios 23.6 6.4E+02 0.014 23.9 14.1 100 254-382 46-147 (224)
96 cd05197 GH4_glycoside_hydrolas 22.3 1.9E+02 0.004 31.8 6.2 61 272-333 12-73 (425)
97 PTZ00346 histone deacetylase; 22.0 63 0.0014 35.6 2.5 26 246-273 175-200 (429)
98 TIGR02129 hisA_euk phosphoribo 21.9 93 0.002 31.9 3.5 26 250-283 50-75 (253)
99 cd01822 Lysophospholipase_L1_l 21.2 6E+02 0.013 22.7 12.6 21 363-383 89-109 (177)
100 KOG1165 Casein kinase (serine/ 21.0 52 0.0011 35.5 1.5 13 250-262 163-175 (449)
101 PRK08287 cobalt-precorrin-6Y C 20.9 3.5E+02 0.0075 25.3 7.0 46 254-311 32-77 (187)
102 COG2890 HemK Methylase of poly 20.8 2.7E+02 0.0058 28.7 6.6 47 256-318 113-159 (280)
103 PRK07402 precorrin-6B methylas 20.8 3.5E+02 0.0075 25.6 7.1 64 236-311 23-86 (196)
104 PTZ00338 dimethyladenosine tra 20.6 5.2E+02 0.011 26.8 8.8 53 245-311 28-80 (294)
105 TIGR03183 DNA_S_dndC putative 20.3 2.9E+02 0.0062 30.7 7.1 80 243-326 3-91 (447)
106 PF00367 PTS_EIIB: phosphotran 20.1 1.6E+02 0.0035 21.0 3.4 21 243-263 2-22 (35)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=1.2e-108 Score=862.38 Aligned_cols=364 Identities=47% Similarity=0.835 Sum_probs=335.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHHHHhhhhcCCCCCCcCcCCCcchhhcccchhH
Q 040125 141 LVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLADRLASVQPLGAVGSFAPSMNIMDIAGSREK 220 (514)
Q Consensus 141 L~~LLl~CAeAV~~gd~~~A~~lL~~L~~~as~~Gd~~QRlA~yF~eAL~~Rl~~~~p~g~~~~~~~~~~~~~~~~~~~~ 220 (514)
|+|||++||+||+.||.+.|+.+|++|++++||+|||+||||+||++||.+|+.+.+|. .....++.. .......++
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~-~~~~~~~~~--~~~~~~~~~ 77 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPG-LYSALPPSS--PSPSESSEQ 77 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcc-cccCCCCcc--ccccchHHH
Confidence 68999999999999999999999999999999999999999999999999999986541 111111111 011113457
Q ss_pred HHHHHHHHhhCCCccchhHhhhHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecC---
Q 040125 221 EEAFRLVYEICPHIQFGHFVANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGL--- 297 (514)
Q Consensus 221 ~~A~~~f~e~sP~~kfahftANqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~--- 297 (514)
..||++||++|||+||||||||||||||++|+++||||||||+ +|.|||+|||+||.|++||| +||||||++
T Consensus 78 ~~a~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~----~G~QW~~LiqaLa~R~~gpp-~LrIT~i~~~~~ 152 (374)
T PF03514_consen 78 LAAYQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIG----FGVQWPSLIQALASRPGGPP-SLRITGIGPPNS 152 (374)
T ss_pred HHHHHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCC----cchHHHHHHHHHhcCCCCCC-eEEEEeccCCCC
Confidence 8999999999999999999999999999999999999999986 68999999999999999999 899999999
Q ss_pred -ChhHHHHHHHHHHHHHHhcCCceEEEee-cCCccccCcccccccCCcEEEEEeccccccccccccc---hHHHHHHHHH
Q 040125 298 -CVEKFQSIGDELKDYAKTYGINLEFSVV-ESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRG---ALNSVLQIIH 372 (514)
Q Consensus 298 -~~~~l~etg~rL~~fA~~lgvpFeF~~V-~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~---~~~~~L~~Ir 372 (514)
+.+.+++||++|.+||+++||||||++| ..++|++++++|++++||+|||||+|+||||++++.. +++.||+.||
T Consensus 153 ~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir 232 (374)
T PF03514_consen 153 GSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR 232 (374)
T ss_pred CcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH
Confidence 6789999999999999999999999995 6799999999999999999999999999999976543 5789999999
Q ss_pred hcCCcEEEEEeecCCCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHhHhHhcCCCCccccccch
Q 040125 373 ELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERV 452 (514)
Q Consensus 373 ~L~PkVvvlvE~ea~~nsp~F~~RF~EAL~yYsAlFDSLda~lp~~~~eR~~iE~~~lg~eI~NiVAcEG~~RvERhE~~ 452 (514)
+|+|+|||++|+|+|||+|+|++||.|||+||+++|||||+++|+++++|..+|+.+||++|+|||||||.+|+||||++
T Consensus 233 ~L~P~vvv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~ 312 (374)
T PF03514_consen 233 SLNPKVVVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERL 312 (374)
T ss_pred hcCCCEEEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhcCCceeccCC--hHHHHHHHHhcCCCCCCcEEEeeCCEEEEeeCCceeEEEeeee
Q 040125 453 DQWRRRMSRAGFQAAPMK--MINQAQKWLKNNKVCEGYTVVEEKGCLVLGWKSKPIIATSCWK 513 (514)
Q Consensus 453 ~~Wr~Rm~~AGF~~v~ls--~~~qa~~lL~~~~~~~gy~v~e~~g~L~LgWk~rpL~svSaWr 513 (514)
++|++||.+|||+++|+| .+.||+.+|+.+. ++||+|++++|||+||||++||+++||||
T Consensus 313 ~~W~~r~~~aGF~~~~ls~~~~~qa~~ll~~~~-~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr 374 (374)
T PF03514_consen 313 EQWRRRMRRAGFRPVPLSEFAVSQAKLLLRKFP-GDGYTVEEDGGCLLLGWKGRPLVAASAWR 374 (374)
T ss_pred hHHHHHHHhcCCeecCCCHHHHHHHHHHHhccC-CCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence 999999999999999999 4689999998776 89999999999999999999999999997
No 2
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.15 E-value=0.035 Score=55.33 Aligned_cols=193 Identities=19% Similarity=0.240 Sum_probs=102.7
Q ss_pred HhhCCCccchhHhhhHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHH
Q 040125 228 YEICPHIQFGHFVANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGD 307 (514)
Q Consensus 228 ~e~sP~~kfahftANqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~ 307 (514)
....|.+...|-.++..+ ...-. ..-+|+|+|-|. |. +...|+.+-. .| ..++|||+.+.+.++.+.+
T Consensus 33 ~~~~p~y~~~~~~~~~~~-~~~~~-~~~~vLDlGcGt----G~----~~~~l~~~~~-~~-~~~v~gvD~S~~ml~~A~~ 100 (247)
T PRK15451 33 QRSVPGYSNIISMIGMLA-ERFVQ-PGTQVYDLGCSL----GA----ATLSVRRNIH-HD-NCKIIAIDNSPAMIERCRR 100 (247)
T ss_pred HhcCCChHHHHHHHHHHH-HHhCC-CCCEEEEEcccC----CH----HHHHHHHhcC-CC-CCeEEEEeCCHHHHHHHHH
Confidence 456888887777766543 33222 234799999753 33 2333444221 23 4899999999888888877
Q ss_pred HHHHHHHhcCCceEEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCc-EEEEEeec
Q 040125 308 ELKDYAKTYGINLEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPK-VLVLVEQD 385 (514)
Q Consensus 308 rL~~fA~~lgvpFeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pk-VvvlvE~e 385 (514)
++.++.. .-.++| +...++++.. ...++++ +.+.||++..+ ....+|+.+ +.|+|. +++++|.=
T Consensus 101 ~~~~~~~--~~~v~~--~~~d~~~~~~-----~~~D~vv--~~~~l~~l~~~---~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 101 HIDAYKA--PTPVDV--IEGDIRDIAI-----ENASMVV--LNFTLQFLEPS---ERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred HHHhcCC--CCCeEE--EeCChhhCCC-----CCCCEEe--hhhHHHhCCHH---HHHHHHHHHHHhcCCCCEEEEEEec
Confidence 7654321 113444 3333433322 2234444 44567887542 234555555 678997 66666643
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHhHhHhcCCCCccccccchhhHHHHHhcCCce
Q 040125 386 SSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQ 465 (514)
Q Consensus 386 a~~nsp~F~~RF~EAL~yYsAlFDSLda~lp~~~~eR~~iE~~~lg~eI~NiVAcEG~~RvERhE~~~~Wr~Rm~~AGF~ 465 (514)
... .+.....+.+..+.|. .. ...++ ..+++. ....+| +-+.++.++..++++.|||.
T Consensus 167 ~~~-~~~~~~~~~~~~~~~~------~~--~g~s~--~ei~~~--~~~~~~---------~~~~~~~~~~~~~L~~aGF~ 224 (247)
T PRK15451 167 SFE-DAKVGELLFNMHHDFK------RA--NGYSE--LEISQK--RSMLEN---------VMLTDSVETHKARLHKAGFE 224 (247)
T ss_pred CCC-cchhHHHHHHHHHHHH------HH--cCCCH--HHHHHH--HHHHHh---------hcccCCHHHHHHHHHHcCch
Confidence 322 2233333333332221 11 11121 112221 122333 23457888999999999998
Q ss_pred ecc
Q 040125 466 AAP 468 (514)
Q Consensus 466 ~v~ 468 (514)
.+.
T Consensus 225 ~v~ 227 (247)
T PRK15451 225 HSE 227 (247)
T ss_pred hHH
Confidence 743
No 3
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=96.21 E-value=0.24 Score=48.78 Aligned_cols=106 Identities=17% Similarity=0.247 Sum_probs=60.0
Q ss_pred ceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCcccc
Q 040125 253 SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENL 332 (514)
Q Consensus 253 ~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l 332 (514)
..-+|+|+|.|- | .++..|+.+-.. | ..++|||+.+...++.+.+++.++.. +.+++|. ...+.++
T Consensus 53 ~~~~iLDlGcG~----G----~~~~~l~~~~~~-p-~~~v~gvD~s~~ml~~a~~~~~~~~~--~~~v~~~--~~d~~~~ 118 (239)
T TIGR00740 53 PDSNVYDLGCSR----G----AATLSARRNINQ-P-NVKIIGIDNSQPMVERCRQHIAAYHS--EIPVEIL--CNDIRHV 118 (239)
T ss_pred CCCEEEEecCCC----C----HHHHHHHHhcCC-C-CCeEEEEeCCHHHHHHHHHHHHhcCC--CCCeEEE--ECChhhC
Confidence 345799999753 3 244555554222 3 48999999988888877777654321 2234443 2333333
Q ss_pred CcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 040125 333 QTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLV 382 (514)
Q Consensus 333 ~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlv 382 (514)
.. .+..++ -+.+.||++.++ ....+|+.+ +.|+|.-.+++
T Consensus 119 ~~-----~~~d~v--~~~~~l~~~~~~---~~~~~l~~i~~~LkpgG~l~i 159 (239)
T TIGR00740 119 EI-----KNASMV--ILNFTLQFLPPE---DRIALLTKIYEGLNPNGVLVL 159 (239)
T ss_pred CC-----CCCCEE--eeecchhhCCHH---HHHHHHHHHHHhcCCCeEEEE
Confidence 22 222343 355567887542 123555555 67899854444
No 4
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.51 E-value=0.96 Score=43.94 Aligned_cols=179 Identities=16% Similarity=0.225 Sum_probs=87.2
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc-eE
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN-LE 321 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp-Fe 321 (514)
+.++..+.=...-+|+|+|.|. |. +...|+.+- +| ..++|||+.+...++.+.+++.+ .+++ .+
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~----G~----~~~~la~~~--~~-~~~v~gvD~s~~~~~~a~~~~~~----~~~~~v~ 99 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGT----AD----WSIALAEAV--GP-EGHVIGLDFSENMLSVGRQKVKD----AGLHNVE 99 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCc----CH----HHHHHHHHh--CC-CCEEEEEECCHHHHHHHHHHHHh----cCCCceE
Confidence 4555555534445899999643 32 334555442 23 47999999887777666666532 3332 23
Q ss_pred EEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHH-HHHhcCCcEEEEEeecCCCCCCchHHHHHHH
Q 040125 322 FSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQ-IIHELSPKVLVLVEQDSSHNGPFFLGRFMEA 400 (514)
Q Consensus 322 F~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~-~Ir~L~PkVvvlvE~ea~~nsp~F~~RF~EA 400 (514)
| +....+++.. ....=+.|+.+ +.+|++.+ ...+|+ ..+.|+|.-.+++-.....+.+. +...
T Consensus 100 ~--~~~d~~~~~~---~~~~fD~V~~~--~~l~~~~~-----~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~----~~~~ 163 (231)
T TIGR02752 100 L--VHGNAMELPF---DDNSFDYVTIG--FGLRNVPD-----YMQVLREMYRVVKPGGKVVCLETSQPTIPG----FKQL 163 (231)
T ss_pred E--EEechhcCCC---CCCCccEEEEe--cccccCCC-----HHHHHHHHHHHcCcCeEEEEEECCCCCChH----HHHH
Confidence 3 2222333221 11111344443 45677643 234555 45778998544443222222222 3333
Q ss_pred HHHHHHHH-hhhhccCCCCCHHHHHHHHHHHHHHHhHhHhcCCCCccccccchhhHHHHHhcCCceeccC
Q 040125 401 LHYYSAIF-DSLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPM 469 (514)
Q Consensus 401 L~yYsAlF-DSLda~lp~~~~eR~~iE~~~lg~eI~NiVAcEG~~RvERhE~~~~Wr~Rm~~AGF~~v~l 469 (514)
+.+|...+ .-+...+..... +...+...+.+ --+.++++..|+.+||..+.+
T Consensus 164 ~~~~~~~~~p~~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~~l~~~l~~aGf~~~~~ 216 (231)
T TIGR02752 164 YFFYFKYIMPLFGKLFAKSYK-----EYSWLQESTRD------------FPGMDELAEMFQEAGFKDVEV 216 (231)
T ss_pred HHHHHcChhHHhhHHhcCCHH-----HHHHHHHHHHH------------cCCHHHHHHHHHHcCCCeeEE
Confidence 33332211 111111211111 11122222222 236678999999999987654
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=94.56 E-value=0.88 Score=45.45 Aligned_cols=180 Identities=19% Similarity=0.297 Sum_probs=67.3
Q ss_pred HHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEE
Q 040125 244 SILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFS 323 (514)
Q Consensus 244 AILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~ 323 (514)
.+++.+......+|+|++.| .|. +...|+.+.+ | .-+||+++.+.+-|+...+++.+.... +.+|.
T Consensus 38 ~~~~~~~~~~g~~vLDv~~G----tG~----~~~~l~~~~~--~-~~~v~~vD~s~~ML~~a~~k~~~~~~~---~i~~v 103 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACG----TGD----VTRELARRVG--P-NGKVVGVDISPGMLEVARKKLKREGLQ---NIEFV 103 (233)
T ss_dssp HHHHHHT--S--EEEEET-T----TSH----HHHHHGGGSS------EEEEEES-HHHHHHHHHHHHHTT-----SEEEE
T ss_pred HHHhccCCCCCCEEEEeCCC----hHH----HHHHHHHHCC--C-ccEEEEecCCHHHHHHHHHHHHhhCCC---CeeEE
Confidence 44555666666799999975 343 3334455432 2 369999999998998888887765433 33332
Q ss_pred eecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcE-EEEEeecCCCCCCchHHHHHHHHH
Q 040125 324 VVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKV-LVLVEQDSSHNGPFFLGRFMEALH 402 (514)
Q Consensus 324 ~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkV-vvlvE~ea~~nsp~F~~RF~EAL~ 402 (514)
. ...+ +|...++..=+|-|.|.||++.+. ...+=...|-|+|.- ++++|-.--. ..++. ....
T Consensus 104 ~--~da~-----~lp~~d~sfD~v~~~fglrn~~d~----~~~l~E~~RVLkPGG~l~ile~~~p~--~~~~~---~~~~ 167 (233)
T PF01209_consen 104 Q--GDAE-----DLPFPDNSFDAVTCSFGLRNFPDR----ERALREMYRVLKPGGRLVILEFSKPR--NPLLR---ALYK 167 (233)
T ss_dssp E---BTT-----B--S-TT-EEEEEEES-GGG-SSH----HHHHHHHHHHEEEEEEEEEEEEEB-S--SHHHH---HHHH
T ss_pred E--cCHH-----HhcCCCCceeEEEHHhhHHhhCCH----HHHHHHHHHHcCCCeEEEEeeccCCC--Cchhh---ceee
Confidence 2 2233 344556667788899999998652 223445567799974 5555643221 12222 3333
Q ss_pred HHHHHHh-hhhccCCCCCHHHHHHHHHHHHHHHhHhHhcCCCCccccccchhhHHHHHhcCCceeccCC
Q 040125 403 YYSAIFD-SLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPMK 470 (514)
Q Consensus 403 yYsAlFD-SLda~lp~~~~eR~~iE~~~lg~eI~NiVAcEG~~RvERhE~~~~Wr~Rm~~AGF~~v~ls 470 (514)
+|...+- -+...+..+ +. +-.+|.+-|.+.. +.++-.+.|+.+||+.+...
T Consensus 168 ~y~~~ilP~~g~l~~~~---~~--~Y~yL~~Si~~f~------------~~~~~~~~l~~~Gf~~v~~~ 219 (233)
T PF01209_consen 168 FYFKYILPLIGRLLSGD---RE--AYRYLPESIRRFP------------SPEELKELLEEAGFKNVEYR 219 (233)
T ss_dssp H--------------------------------------------------------------------
T ss_pred eeecccccccccccccc---cc--ccccccccccccc------------cccccccccccccccccccc
Confidence 4443221 122222221 11 1234566666543 33344567899999876653
No 6
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=92.66 E-value=2.2 Score=43.66 Aligned_cols=118 Identities=12% Similarity=0.150 Sum_probs=64.4
Q ss_pred hHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceE
Q 040125 242 NSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLE 321 (514)
Q Consensus 242 NqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFe 321 (514)
.+.|++.+.-.+.-+|+|+|-| .| .+...++.+. | .+++|+++.+ ..++.+.+ .++..|+.=.
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G----~G----~~~~~~~~~~---p-~~~~~~~D~~-~~~~~a~~----~~~~~gl~~r 200 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGG----IG----DISAAMLKHF---P-ELDSTILNLP-GAIDLVNE----NAAEKGVADR 200 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCc----hh----HHHHHHHHHC---C-CCEEEEEecH-HHHHHHHH----HHHhCCccce
Confidence 5677888766666799999954 33 3445565553 4 4899999863 34444433 4455565322
Q ss_pred EEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCc-EEEEEeecC
Q 040125 322 FSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPK-VLVLVEQDS 386 (514)
Q Consensus 322 F~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pk-VvvlvE~ea 386 (514)
++.+.....+. .+ ...+++.+. ..||+..++ ....+|+.+ +.|+|. .++++|.-.
T Consensus 201 v~~~~~d~~~~---~~--~~~D~v~~~--~~lh~~~~~---~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 201 MRGIAVDIYKE---SY--PEADAVLFC--RILYSANEQ---LSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred EEEEecCccCC---CC--CCCCEEEeE--hhhhcCChH---HHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 23332222211 11 223444433 245665332 234567655 689996 566667543
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=92.65 E-value=13 Score=37.63 Aligned_cols=133 Identities=15% Similarity=0.137 Sum_probs=71.5
Q ss_pred hhhHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc
Q 040125 240 VANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN 319 (514)
Q Consensus 240 tANqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp 319 (514)
.....+++.+.-...-+|+|+|.| .|. +...|+.+-+ | .-+||||+.+.+.++.+.++....++...-.
T Consensus 60 ~~r~~~~~~~~~~~~~~VLDlGcG----tG~----~~~~la~~~~--~-~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~ 128 (261)
T PLN02233 60 IWKRMAVSWSGAKMGDRVLDLCCG----SGD----LAFLLSEKVG--S-DGKVMGLDFSSEQLAVAASRQELKAKSCYKN 128 (261)
T ss_pred HHHHHHHHHhCCCCCCEEEEECCc----CCH----HHHHHHHHhC--C-CCEEEEEECCHHHHHHHHHHhhhhhhccCCC
Confidence 334444444443445689999975 343 3345555432 3 3599999999888888776654323322223
Q ss_pred eEEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHH-HHHhcCCc-EEEEEeecCCCCCCchHHHH
Q 040125 320 LEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQ-IIHELSPK-VLVLVEQDSSHNGPFFLGRF 397 (514)
Q Consensus 320 FeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~-~Ir~L~Pk-VvvlvE~ea~~nsp~F~~RF 397 (514)
.+|.. ...+++ ...++..=+|-+.+.||++.+ ...+|+ ..|-|+|. .++++|-.. ....|...+
T Consensus 129 i~~~~--~d~~~l-----p~~~~sfD~V~~~~~l~~~~d-----~~~~l~ei~rvLkpGG~l~i~d~~~--~~~~~~~~~ 194 (261)
T PLN02233 129 IEWIE--GDATDL-----PFDDCYFDAITMGYGLRNVVD-----RLKAMQEMYRVLKPGSRVSILDFNK--STQPFTTSM 194 (261)
T ss_pred eEEEE--cccccC-----CCCCCCEeEEEEecccccCCC-----HHHHHHHHHHHcCcCcEEEEEECCC--CCcHHHHHH
Confidence 44432 223333 233333334445667788753 234444 44779998 445555432 223455444
No 8
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=92.11 E-value=1.1 Score=37.94 Aligned_cols=105 Identities=22% Similarity=0.325 Sum_probs=59.4
Q ss_pred EEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccCcc
Q 040125 256 HVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQTK 335 (514)
Q Consensus 256 HIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~~~ 335 (514)
+|+|+|-+.| .+...|+.+. | ..++|||+.+.+.++...++..+.. .+-..+|.. ..+ . .
T Consensus 4 ~vLDlGcG~G--------~~~~~l~~~~---~-~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~i~~~~--~d~-~---~ 63 (112)
T PF12847_consen 4 RVLDLGCGTG--------RLSIALARLF---P-GARVVGVDISPEMLEIARERAAEEG--LSDRITFVQ--GDA-E---F 63 (112)
T ss_dssp EEEEETTTTS--------HHHHHHHHHH---T-TSEEEEEESSHHHHHHHHHHHHHTT--TTTTEEEEE--SCC-H---G
T ss_pred EEEEEcCcCC--------HHHHHHHhcC---C-CCEEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEE--Ccc-c---c
Confidence 6899997543 2333444421 2 4789999999888888888774433 333444433 222 0 0
Q ss_pred ccccc-CCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 040125 336 DIKVL-ENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 336 ~l~~~-~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE 383 (514)
..... +=++++.+. +.+|+++.. .....+|+.+ +.|+|.-.++++
T Consensus 64 ~~~~~~~~D~v~~~~-~~~~~~~~~--~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 64 DPDFLEPFDLVICSG-FTLHFLLPL--DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp GTTTSSCEEEEEECS-GSGGGCCHH--HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcccCCCCCEEEECC-Cccccccch--hHHHHHHHHHHHhcCCCcEEEEE
Confidence 11111 124555555 456666543 2345677766 578998766654
No 9
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=91.71 E-value=16 Score=36.90 Aligned_cols=190 Identities=21% Similarity=0.344 Sum_probs=111.6
Q ss_pred hCCCccch-hHhhhHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHH
Q 040125 230 ICPHIQFG-HFVANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDE 308 (514)
Q Consensus 230 ~sP~~kfa-hftANqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~r 308 (514)
..+++.|+ |.+=+++..+.+.-.+--+|+|.+-|- | .|.-++. +.-| .-+||+++.+...|+...++
T Consensus 27 ~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GT----G-d~a~~~~---k~~g----~g~v~~~D~s~~ML~~a~~k 94 (238)
T COG2226 27 MNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGT----G-DMALLLA---KSVG----TGEVVGLDISESMLEVAREK 94 (238)
T ss_pred hcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCc----c-HHHHHHH---HhcC----CceEEEEECCHHHHHHHHHH
Confidence 35666776 566677776666544678999999753 3 4444444 3333 47999999999888888877
Q ss_pred HHHHHHhcCCc-eEEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEeecC
Q 040125 309 LKDYAKTYGIN-LEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVEQDS 386 (514)
Q Consensus 309 L~~fA~~lgvp-FeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE~ea 386 (514)
+.+ .|+- ++| |....|+| ...++-.=+|-+.|.||++.+ .+.+|+-+ |=|+|...+++-.=.
T Consensus 95 ~~~----~~~~~i~f--v~~dAe~L-----Pf~D~sFD~vt~~fglrnv~d-----~~~aL~E~~RVlKpgG~~~vle~~ 158 (238)
T COG2226 95 LKK----KGVQNVEF--VVGDAENL-----PFPDNSFDAVTISFGLRNVTD-----IDKALKEMYRVLKPGGRLLVLEFS 158 (238)
T ss_pred hhc----cCccceEE--EEechhhC-----CCCCCccCEEEeeehhhcCCC-----HHHHHHHHHHhhcCCeEEEEEEcC
Confidence 544 3322 444 33334443 344554556778888898864 34555544 668999766654333
Q ss_pred CCCCCchHHHHHHHHH-HHHH-HHhhhhccCCCCCHHHHHHHHHHHHHHHhHhHhcCCCCccccccchhhHHHHHhcCCc
Q 040125 387 SHNGPFFLGRFMEALH-YYSA-IFDSLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGF 464 (514)
Q Consensus 387 ~~nsp~F~~RF~EAL~-yYsA-lFDSLda~lp~~~~eR~~iE~~~lg~eI~NiVAcEG~~RvERhE~~~~Wr~Rm~~AGF 464 (514)
....+. |...++ ||.. ++=.+.........+.. ++.+-|.. +-..+.-.+.|..+||
T Consensus 159 ~p~~~~----~~~~~~~~~~~~v~P~~g~~~~~~~~~y~-----yL~eSi~~------------~p~~~~l~~~~~~~gf 217 (238)
T COG2226 159 KPDNPV----LRKAYILYYFKYVLPLIGKLVAKDAEAYE-----YLAESIRR------------FPDQEELKQMIEKAGF 217 (238)
T ss_pred CCCchh----hHHHHHHHHHHhHhhhhceeeecChHHHH-----HHHHHHHh------------CCCHHHHHHHHHhcCc
Confidence 333333 333344 4444 55555544433333333 33444443 3455566677888999
Q ss_pred eecc
Q 040125 465 QAAP 468 (514)
Q Consensus 465 ~~v~ 468 (514)
..+.
T Consensus 218 ~~i~ 221 (238)
T COG2226 218 EEVR 221 (238)
T ss_pred eEEe
Confidence 8754
No 10
>PRK06202 hypothetical protein; Provisional
Probab=91.63 E-value=4.8 Score=39.40 Aligned_cols=117 Identities=16% Similarity=0.157 Sum_probs=60.4
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEE
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEF 322 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF 322 (514)
+.+...+...+...|+|+|-|. |. +...|..... ..|| ..+||||+.+.+.++...++. +..++.+..
T Consensus 50 ~~~~~~l~~~~~~~iLDlGcG~----G~-~~~~L~~~~~-~~g~--~~~v~gvD~s~~~l~~a~~~~----~~~~~~~~~ 117 (232)
T PRK06202 50 RLLRPALSADRPLTLLDIGCGG----GD-LAIDLARWAR-RDGL--RLEVTAIDPDPRAVAFARANP----RRPGVTFRQ 117 (232)
T ss_pred HHHHHhcCCCCCcEEEEeccCC----CH-HHHHHHHHHH-hCCC--CcEEEEEcCCHHHHHHHHhcc----ccCCCeEEE
Confidence 3333333334567899999754 33 3333322222 2233 379999999887776655442 223454433
Q ss_pred EeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEe
Q 040125 323 SVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLVE 383 (514)
Q Consensus 323 ~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkVvvlvE 383 (514)
... +.+. ..++..=+|-|.+.|||+.++ ....+|+.+.++.-..+++.+
T Consensus 118 ~~~----~~l~-----~~~~~fD~V~~~~~lhh~~d~---~~~~~l~~~~r~~~~~~~i~d 166 (232)
T PRK06202 118 AVS----DELV-----AEGERFDVVTSNHFLHHLDDA---EVVRLLADSAALARRLVLHND 166 (232)
T ss_pred Eec----cccc-----ccCCCccEEEECCeeecCChH---HHHHHHHHHHHhcCeeEEEec
Confidence 211 1121 122323333444567998653 245677777665545555443
No 11
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=91.22 E-value=2.7 Score=37.62 Aligned_cols=98 Identities=16% Similarity=0.226 Sum_probs=54.2
Q ss_pred CCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCcc
Q 040125 251 GESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLE 330 (514)
Q Consensus 251 g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE 330 (514)
..+.-.|+|+|-+. | . +.+.|+.+ + .++||++.+...++. ..+.+.-....
T Consensus 20 ~~~~~~vLDiGcG~----G-~---~~~~l~~~----~--~~~~g~D~~~~~~~~-----------~~~~~~~~~~~---- 70 (161)
T PF13489_consen 20 LKPGKRVLDIGCGT----G-S---FLRALAKR----G--FEVTGVDISPQMIEK-----------RNVVFDNFDAQ---- 70 (161)
T ss_dssp TTTTSEEEEESSTT----S-H---HHHHHHHT----T--SEEEEEESSHHHHHH-----------TTSEEEEEECH----
T ss_pred cCCCCEEEEEcCCC----C-H---HHHHHHHh----C--CEEEEEECCHHHHhh-----------hhhhhhhhhhh----
Confidence 35566999999753 3 3 45555554 2 299999988766555 22222211100
Q ss_pred ccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCc-EEEEEeecCC
Q 040125 331 NLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPK-VLVLVEQDSS 387 (514)
Q Consensus 331 ~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pk-VvvlvE~ea~ 387 (514)
.....++-.=+|-|...|||+.+ ...+|+.| +.|+|. ++++++....
T Consensus 71 -----~~~~~~~~fD~i~~~~~l~~~~d-----~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 71 -----DPPFPDGSFDLIICNDVLEHLPD-----PEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp -----THHCHSSSEEEEEEESSGGGSSH-----HHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred -----hhhccccchhhHhhHHHHhhccc-----HHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 11122333444555577899874 34566666 458886 4555555543
No 12
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=90.05 E-value=4.3 Score=36.95 Aligned_cols=108 Identities=27% Similarity=0.461 Sum_probs=60.4
Q ss_pred CceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc-eEEEeecCCcc
Q 040125 252 ESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN-LEFSVVESNLE 330 (514)
Q Consensus 252 ~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp-FeF~~V~~~lE 330 (514)
.+..+|+|+|.|.| .+...|+.+- +| ..++|||+.+.+.++...+ .++..+++ .+|.. ..++
T Consensus 2 ~~~~~iLDlGcG~G--------~~~~~l~~~~-~~--~~~i~gvD~s~~~i~~a~~----~~~~~~~~ni~~~~--~d~~ 64 (152)
T PF13847_consen 2 KSNKKILDLGCGTG--------RLLIQLAKEL-NP--GAKIIGVDISEEMIEYAKK----RAKELGLDNIEFIQ--GDIE 64 (152)
T ss_dssp TTTSEEEEET-TTS--------HHHHHHHHHS-TT--TSEEEEEESSHHHHHHHHH----HHHHTTSTTEEEEE--SBTT
T ss_pred CCCCEEEEecCcCc--------HHHHHHHHhc-CC--CCEEEEEECcHHHHHHhhc----ccccccccccceEE--eehh
Confidence 35679999997543 2334455322 12 3679999988766665554 56777887 66654 3344
Q ss_pred ccCcccccccCCcEEEEEeccccccccccccchHHHHH-HHHHhcCCcEEEEE-eec
Q 040125 331 NLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVL-QIIHELSPKVLVLV-EQD 385 (514)
Q Consensus 331 ~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L-~~Ir~L~PkVvvlv-E~e 385 (514)
++... +. ..=+.+..+ ..+|++.+ ...+| ...+.|+|..++++ +..
T Consensus 65 ~l~~~-~~-~~~D~I~~~--~~l~~~~~-----~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 65 DLPQE-LE-EKFDIIISN--GVLHHFPD-----PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp CGCGC-SS-TTEEEEEEE--STGGGTSH-----HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ccccc-cC-CCeeEEEEc--CchhhccC-----HHHHHHHHHHHcCCCcEEEEEECC
Confidence 44422 22 222344444 44476643 23444 45678898855544 433
No 13
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=86.72 E-value=29 Score=32.85 Aligned_cols=118 Identities=23% Similarity=0.272 Sum_probs=62.3
Q ss_pred hhhHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc
Q 040125 240 VANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN 319 (514)
Q Consensus 240 tANqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp 319 (514)
..-+.+++.+.-.....|+|+|.+. |. +...++.+- |+ ..++|+|+.+...++.+.+++. .+-.
T Consensus 26 ~~~~~~~~~~~~~~~~~vldiG~G~----G~----~~~~~~~~~--~~-~~~~~~iD~~~~~~~~~~~~~~-----~~~~ 89 (223)
T TIGR01934 26 LWRRRAVKLIGVFKGQKVLDVACGT----GD----LAIELAKSA--PD-RGKVTGVDFSSEMLEVAKKKSE-----LPLN 89 (223)
T ss_pred HHHHHHHHHhccCCCCeEEEeCCCC----Ch----hHHHHHHhc--CC-CceEEEEECCHHHHHHHHHHhc-----cCCC
Confidence 3445566666555677999999753 32 333444432 33 4789999988776666665543 2223
Q ss_pred eEEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHH-HHhcCCcE-EEEEeec
Q 040125 320 LEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQI-IHELSPKV-LVLVEQD 385 (514)
Q Consensus 320 FeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~-Ir~L~PkV-vvlvE~e 385 (514)
.+|.. ..+.++. ..++..=+|-+.+.+|++.+ ...+|+. .+.|+|.- +++++..
T Consensus 90 i~~~~--~d~~~~~-----~~~~~~D~i~~~~~~~~~~~-----~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 90 IEFIQ--ADAEALP-----FEDNSFDAVTIAFGLRNVTD-----IQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred ceEEe--cchhcCC-----CCCCcEEEEEEeeeeCCccc-----HHHHHHHHHHHcCCCcEEEEEEec
Confidence 34433 2222221 11222333334455677543 2345544 46678874 4455554
No 14
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=86.20 E-value=36 Score=34.34 Aligned_cols=114 Identities=17% Similarity=0.225 Sum_probs=60.8
Q ss_pred HhhhHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCC
Q 040125 239 FVANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGI 318 (514)
Q Consensus 239 ftANqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgv 318 (514)
+-+.+.+++.+.-...-+|+|+|-+.| . + ...|+.+. ..++|+|+.+...++...++... .-
T Consensus 38 ~~~~~~~l~~l~l~~~~~VLDiGcG~G----~-~---a~~la~~~-----~~~v~giD~s~~~~~~a~~~~~~-----~~ 99 (263)
T PTZ00098 38 IEATTKILSDIELNENSKVLDIGSGLG----G-G---CKYINEKY-----GAHVHGVDICEKMVNIAKLRNSD-----KN 99 (263)
T ss_pred hHHHHHHHHhCCCCCCCEEEEEcCCCC----h-h---hHHHHhhc-----CCEEEEEECCHHHHHHHHHHcCc-----CC
Confidence 345677777776566678999997643 2 1 23444432 25899999887666666555332 11
Q ss_pred ceEEEeecCCccccCcccccccCC--cEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 040125 319 NLEFSVVESNLENLQTKDIKVLEN--EVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLV 382 (514)
Q Consensus 319 pFeF~~V~~~lE~l~~~~l~~~~~--EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlv 382 (514)
..+|... ...+. ...++ ++|+. ...++|+..+ ....+|+.+ +.|+|.-.+++
T Consensus 100 ~i~~~~~--D~~~~-----~~~~~~FD~V~s--~~~l~h~~~~---d~~~~l~~i~r~LkPGG~lvi 154 (263)
T PTZ00098 100 KIEFEAN--DILKK-----DFPENTFDMIYS--RDAILHLSYA---DKKKLFEKCYKWLKPNGILLI 154 (263)
T ss_pred ceEEEEC--CcccC-----CCCCCCeEEEEE--hhhHHhCCHH---HHHHHHHHHHHHcCCCcEEEE
Confidence 2344332 11111 11122 23333 3344665421 234566555 67899844443
No 15
>PRK08317 hypothetical protein; Provisional
Probab=85.17 E-value=35 Score=32.40 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=33.4
Q ss_pred HHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHH
Q 040125 245 ILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDE 308 (514)
Q Consensus 245 ILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~r 308 (514)
+++.+.-...-+|+|+|.+. | +|. ..++.+- +| .-++|+|+.+...++...++
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~----G-~~~---~~~a~~~--~~-~~~v~~~d~~~~~~~~a~~~ 63 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGP----G-NDA---RELARRV--GP-EGRVVGIDRSEAMLALAKER 63 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCC----C-HHH---HHHHHhc--CC-CcEEEEEeCCHHHHHHHHHH
Confidence 55666655566899999753 3 343 3444443 23 46999999887666665554
No 16
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=85.10 E-value=42 Score=36.58 Aligned_cols=114 Identities=15% Similarity=0.176 Sum_probs=63.4
Q ss_pred hhHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCce
Q 040125 241 ANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINL 320 (514)
Q Consensus 241 ANqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpF 320 (514)
....+++.+.-.+.-+|+|+|.|. | .+...|+.+.+ .++|||+.+...++.+.++. ...+...
T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~----G----~~~~~la~~~~-----~~v~gvDiS~~~l~~A~~~~----~~~~~~v 316 (475)
T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGI----G----GGDFYMAENFD-----VHVVGIDLSVNMISFALERA----IGRKCSV 316 (475)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccC----C----HHHHHHHHhcC-----CEEEEEECCHHHHHHHHHHh----hcCCCce
Confidence 345566766544456899999753 3 23345666542 48999999877766655442 2344455
Q ss_pred EEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHH-HHHhcCCcEEEEEe
Q 040125 321 EFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQ-IIHELSPKVLVLVE 383 (514)
Q Consensus 321 eF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~-~Ir~L~PkVvvlvE 383 (514)
+|.... +.++. ..++..=+|-|...++|+.+ + ..+|+ ..+.|+|.-.+++.
T Consensus 317 ~~~~~d--~~~~~-----~~~~~fD~I~s~~~l~h~~d----~-~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 317 EFEVAD--CTKKT-----YPDNSFDVIYSRDTILHIQD----K-PALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred EEEEcC--cccCC-----CCCCCEEEEEECCcccccCC----H-HHHHHHHHHHcCCCeEEEEE
Confidence 664421 22211 11222333445556677753 2 24444 44778998665554
No 17
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=84.90 E-value=5.6 Score=33.54 Aligned_cols=94 Identities=26% Similarity=0.399 Sum_probs=50.3
Q ss_pred EEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccCccc
Q 040125 257 VVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQTKD 336 (514)
Q Consensus 257 IVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~~~~ 336 (514)
|+|+|-| .|..=..|.+.+ . . +| ..++|+|+.+.+.++.+.++..+ .+++.+|.. ..+.++
T Consensus 1 ILDlgcG----~G~~~~~l~~~~-~-~-~~--~~~~~gvD~s~~~l~~~~~~~~~----~~~~~~~~~--~D~~~l---- 61 (101)
T PF13649_consen 1 ILDLGCG----TGRVTRALARRF-D-A-GP--SSRVIGVDISPEMLELAKKRFSE----DGPKVRFVQ--ADARDL---- 61 (101)
T ss_dssp -EEET-T----TSHHHHHHHHHS----------SEEEEEES-HHHHHHHHHHSHH----TTTTSEEEE--SCTTCH----
T ss_pred CEEeecC----CcHHHHHHHHHh-h-h-cc--cceEEEEECCHHHHHHHHHhchh----cCCceEEEE--CCHhHC----
Confidence 7899975 455445555544 1 2 23 38999999998888777665544 555666633 333333
Q ss_pred ccccCCcE-EEEEeccccccccccccchHHHHHHHHHh
Q 040125 337 IKVLENEV-LVVNSILQLHCVVKESRGALNSVLQIIHE 373 (514)
Q Consensus 337 l~~~~~Ea-LaVN~~~~Lh~l~~es~~~~~~~L~~Ir~ 373 (514)
....+.. +||.+...+||+.+ ..+..+|+.+.+
T Consensus 62 -~~~~~~~D~v~~~~~~~~~~~~---~~~~~ll~~~~~ 95 (101)
T PF13649_consen 62 -PFSDGKFDLVVCSGLSLHHLSP---EELEALLRRIAR 95 (101)
T ss_dssp -HHHSSSEEEEEE-TTGGGGSSH---HHHHHHHHHHHH
T ss_pred -cccCCCeeEEEEcCCccCCCCH---HHHHHHHHHHHH
Confidence 2233333 44444455788644 235667776644
No 18
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=81.36 E-value=48 Score=34.77 Aligned_cols=104 Identities=19% Similarity=0.200 Sum_probs=59.3
Q ss_pred ceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHH-h-cCCceEEEeecCCcc
Q 040125 253 SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAK-T-YGINLEFSVVESNLE 330 (514)
Q Consensus 253 ~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~-~-lgvpFeF~~V~~~lE 330 (514)
+...|+|+|.|- |. +...|+.+ | .+||||+.+...++...++..+.-. . -+...+|... .++
T Consensus 144 ~~~~VLDlGcGt----G~----~a~~la~~-g-----~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~--Dl~ 207 (315)
T PLN02585 144 AGVTVCDAGCGT----GS----LAIPLALE-G-----AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAN--DLE 207 (315)
T ss_pred CCCEEEEecCCC----CH----HHHHHHHC-C-----CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEc--chh
Confidence 456899999643 22 44556654 2 4899999998888777766533210 0 1233455432 233
Q ss_pred ccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEe
Q 040125 331 NLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLVE 383 (514)
Q Consensus 331 ~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkVvvlvE 383 (514)
+++ ..=+ +|-|...|||+.++ ....+++.++.+.|..+++.-
T Consensus 208 ~l~------~~fD--~Vv~~~vL~H~p~~---~~~~ll~~l~~l~~g~liIs~ 249 (315)
T PLN02585 208 SLS------GKYD--TVTCLDVLIHYPQD---KADGMIAHLASLAEKRLIISF 249 (315)
T ss_pred hcC------CCcC--EEEEcCEEEecCHH---HHHHHHHHHHhhcCCEEEEEe
Confidence 221 1112 22345556777653 245688888888888777743
No 19
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=81.35 E-value=24 Score=36.39 Aligned_cols=120 Identities=15% Similarity=0.139 Sum_probs=69.1
Q ss_pred HHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEe
Q 040125 245 ILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSV 324 (514)
Q Consensus 245 ILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~ 324 (514)
|.+++. ....|||+|-| .|.-=..|++++.. ..++|+|+.+.+.|+.+.++|.+- .-++++++
T Consensus 57 ia~~~~--~~~~iLELGcG----tG~~t~~Ll~~l~~-------~~~~~~iDiS~~mL~~a~~~l~~~--~p~~~v~~-- 119 (301)
T TIGR03438 57 IAAATG--AGCELVELGSG----SSRKTRLLLDALRQ-------PARYVPIDISADALKESAAALAAD--YPQLEVHG-- 119 (301)
T ss_pred HHHhhC--CCCeEEecCCC----cchhHHHHHHhhcc-------CCeEEEEECCHHHHHHHHHHHHhh--CCCceEEE--
Confidence 444443 23579999974 45444456666632 278999999999999998888641 12344433
Q ss_pred ecCCccc-cCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEeec
Q 040125 325 VESNLEN-LQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVEQD 385 (514)
Q Consensus 325 V~~~lE~-l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE~e 385 (514)
+.....+ +... -....+..+++.+...++++.. .....+|+.+ +.|+|.-..++.-|
T Consensus 120 i~gD~~~~~~~~-~~~~~~~~~~~~~gs~~~~~~~---~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 120 ICADFTQPLALP-PEPAAGRRLGFFPGSTIGNFTP---EEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred EEEcccchhhhh-cccccCCeEEEEecccccCCCH---HHHHHHHHHHHHhcCCCCEEEEecc
Confidence 3322222 1100 0011224666766666777643 2345788877 56899866665444
No 20
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=81.10 E-value=24 Score=33.82 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=62.8
Q ss_pred hhhHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc
Q 040125 240 VANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN 319 (514)
Q Consensus 240 tANqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp 319 (514)
++...|++++.-...-+|+|+|-|. |. +...||.+ | .++|||+.+...++.+.+ .++.-|++
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~----G~----~a~~la~~-g-----~~V~~iD~s~~~l~~a~~----~~~~~~~~ 78 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQ----GR----NSLYLSLA-G-----YDVRAWDHNPASIASVLD----MKARENLP 78 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCC----CH----HHHHHHHC-C-----CeEEEEECCHHHHHHHHH----HHHHhCCC
Confidence 4667888888765667999999753 32 22345544 2 479999988765555544 34555776
Q ss_pred eEEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEE
Q 040125 320 LEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVL 379 (514)
Q Consensus 320 FeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVv 379 (514)
.++.... +.... +. ..=+.++.+. .+|++.. ..+..+++.+ +.|+|.-.
T Consensus 79 v~~~~~d--~~~~~---~~-~~fD~I~~~~--~~~~~~~---~~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 79 LRTDAYD--INAAA---LN-EDYDFIFSTV--VFMFLQA---GRVPEIIANMQAHTRPGGY 128 (195)
T ss_pred ceeEecc--chhcc---cc-CCCCEEEEec--ccccCCH---HHHHHHHHHHHHHhCCCcE
Confidence 5444322 22111 11 1124444443 3577643 2345666665 66899854
No 21
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=80.82 E-value=27 Score=38.00 Aligned_cols=114 Identities=16% Similarity=0.216 Sum_probs=59.2
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEE
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEF 322 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF 322 (514)
..|++.+.....-+|+|+|-|. | .+...|+.+. -++|||+.+...++...+ + . ...-..+|
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~----G----~~~~~la~~~------~~v~giD~s~~~l~~a~~-~---~-~~~~~i~~ 87 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGI----G----RFTGELAKKA------GQVIALDFIESVIKKNES-I---N-GHYKNVKF 87 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCc----C----HHHHHHHhhC------CEEEEEeCCHHHHHHHHH-H---h-ccCCceEE
Confidence 4566666544445899999753 4 3334455542 278999988766654322 1 1 11112333
Q ss_pred EeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 040125 323 SVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 323 ~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE 383 (514)
.. ...++. .+...++..=+|-|.+.|||+.++ ....+|..+ +-|+|...++..
T Consensus 88 ~~--~d~~~~---~~~~~~~~fD~I~~~~~l~~l~~~---~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 88 MC--ADVTSP---DLNISDGSVDLIFSNWLLMYLSDK---EVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred EE--eccccc---ccCCCCCCEEEEehhhhHHhCCHH---HHHHHHHHHHHhcCCCeEEEEE
Confidence 22 112111 112222323344455567888653 245666665 458999666553
No 22
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=80.21 E-value=18 Score=37.11 Aligned_cols=113 Identities=17% Similarity=0.226 Sum_probs=63.9
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEE
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEF 322 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF 322 (514)
..|+|.+.=+.-=||+|+| +.|-.++..+|++.| .++|||..+.+-.+.+.++ ++..|++=..
T Consensus 52 ~~~~~~~~l~~G~~vLDiG--------cGwG~~~~~~a~~~g-----~~v~gitlS~~Q~~~a~~~----~~~~gl~~~v 114 (273)
T PF02353_consen 52 DLLCEKLGLKPGDRVLDIG--------CGWGGLAIYAAERYG-----CHVTGITLSEEQAEYARER----IREAGLEDRV 114 (273)
T ss_dssp HHHHTTTT--TT-EEEEES---------TTSHHHHHHHHHH-------EEEEEES-HHHHHHHHHH----HHCSTSSSTE
T ss_pred HHHHHHhCCCCCCEEEEeC--------CCccHHHHHHHHHcC-----cEEEEEECCHHHHHHHHHH----HHhcCCCCce
Confidence 4566666545556999998 468899999999863 6899999877655555444 5677876333
Q ss_pred EeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 040125 323 SVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 323 ~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE 383 (514)
..+.....+++. .=|-++.| -.+-|+.. .....|++.+ +-|+|.-.+++.
T Consensus 115 ~v~~~D~~~~~~-----~fD~IvSi---~~~Ehvg~---~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 115 EVRLQDYRDLPG-----KFDRIVSI---EMFEHVGR---KNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp EEEES-GGG--------S-SEEEEE---SEGGGTCG---GGHHHHHHHHHHHSETTEEEEEE
T ss_pred EEEEeeccccCC-----CCCEEEEE---echhhcCh---hHHHHHHHHHHHhcCCCcEEEEE
Confidence 333233333332 22223333 22355532 2356788888 568998666653
No 23
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=79.66 E-value=46 Score=35.05 Aligned_cols=100 Identities=18% Similarity=0.176 Sum_probs=54.9
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCC--ceEEEeecCCccc
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGI--NLEFSVVESNLEN 331 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgv--pFeF~~V~~~lE~ 331 (514)
.-.|+|+|.|. |. +...|+. .| .++|||+.+.+.++...++ ++..++ ..+|.. ...++
T Consensus 132 g~~ILDIGCG~----G~----~s~~La~-~g-----~~V~GID~s~~~i~~Ar~~----~~~~~~~~~i~~~~--~dae~ 191 (322)
T PLN02396 132 GLKFIDIGCGG----GL----LSEPLAR-MG-----ATVTGVDAVDKNVKIARLH----ADMDPVTSTIEYLC--TTAEK 191 (322)
T ss_pred CCEEEEeeCCC----CH----HHHHHHH-cC-----CEEEEEeCCHHHHHHHHHH----HHhcCcccceeEEe--cCHHH
Confidence 34799999753 32 4456664 22 4899999887776655543 222222 334433 22333
Q ss_pred cCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 040125 332 LQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 332 l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE 383 (514)
+. ..++..=+|-|..-|||+.+. ..||+.+ +-|+|.-.+++.
T Consensus 192 l~-----~~~~~FD~Vi~~~vLeHv~d~-----~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 192 LA-----DEGRKFDAVLSLEVIEHVANP-----AEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred hh-----hccCCCCEEEEhhHHHhcCCH-----HHHHHHHHHHcCCCcEEEEE
Confidence 32 112222234445567988652 3566666 457998555554
No 24
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=78.75 E-value=33 Score=33.70 Aligned_cols=110 Identities=26% Similarity=0.324 Sum_probs=56.3
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEE
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEF 322 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF 322 (514)
..++++..=.+.-+|||+|-+ .| .+..+|+.+. | .||+|..+.|. .++.+.+ .=..+|
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG----~G----~~~~~l~~~~---P-~l~~~v~Dlp~-v~~~~~~---------~~rv~~ 147 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGG----SG----HFAIALARAY---P-NLRATVFDLPE-VIEQAKE---------ADRVEF 147 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-T----TS----HHHHHHHHHS---T-TSEEEEEE-HH-HHCCHHH---------TTTEEE
T ss_pred hhhhccccccCccEEEeccCc----ch----HHHHHHHHHC---C-CCcceeeccHh-hhhcccc---------cccccc
Confidence 456666665555689999964 44 3334445443 4 69999998753 1211111 222344
Q ss_pred EeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCc---EEEEEeecCC
Q 040125 323 SVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPK---VLVLVEQDSS 387 (514)
Q Consensus 323 ~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pk---VvvlvE~ea~ 387 (514)
.+- .+- +.+.. .+++.+ ..-||...++. ...+|+.+ +.|.|. .++++|.=.+
T Consensus 148 ~~g--d~f----~~~P~--~D~~~l--~~vLh~~~d~~---~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 148 VPG--DFF----DPLPV--ADVYLL--RHVLHDWSDED---CVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp EES---TT----TCCSS--ESEEEE--ESSGGGS-HHH---HHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred ccc--cHH----hhhcc--ccceee--ehhhhhcchHH---HHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 331 111 11222 334444 44557776542 34566666 568876 6667676443
No 25
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=78.68 E-value=39 Score=35.14 Aligned_cols=108 Identities=19% Similarity=0.266 Sum_probs=66.7
Q ss_pred hHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceE
Q 040125 242 NSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLE 321 (514)
Q Consensus 242 NqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFe 321 (514)
-..|++-+.=+.--||+|+| +.|-.|+.-.|.+.| +++|||..+.+-+....+| ++..|++=.
T Consensus 61 ~~~~~~kl~L~~G~~lLDiG--------CGWG~l~~~aA~~y~-----v~V~GvTlS~~Q~~~~~~r----~~~~gl~~~ 123 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIG--------CGWGGLAIYAAEEYG-----VTVVGVTLSEEQLAYAEKR----IAARGLEDN 123 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeC--------CChhHHHHHHHHHcC-----CEEEEeeCCHHHHHHHHHH----HHHcCCCcc
Confidence 34455555556678999997 679999999999864 7999999887666666555 455666522
Q ss_pred EEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHh-cCCc
Q 040125 322 FSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHE-LSPK 377 (514)
Q Consensus 322 F~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~-L~Pk 377 (514)
.+.....+.++... -|-+| ++=.++|+-.+ ..+.|++.+++ |+|.
T Consensus 124 v~v~l~d~rd~~e~-----fDrIv---SvgmfEhvg~~---~~~~ff~~~~~~L~~~ 169 (283)
T COG2230 124 VEVRLQDYRDFEEP-----FDRIV---SVGMFEHVGKE---NYDDFFKKVYALLKPG 169 (283)
T ss_pred cEEEeccccccccc-----cceee---ehhhHHHhCcc---cHHHHHHHHHhhcCCC
Confidence 22222334444322 12222 22334666432 25688888866 6676
No 26
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=77.46 E-value=26 Score=34.62 Aligned_cols=111 Identities=21% Similarity=0.255 Sum_probs=61.0
Q ss_pred hHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceE
Q 040125 242 NSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLE 321 (514)
Q Consensus 242 NqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFe 321 (514)
+..+++.+.-.+.-+|+|+|.|.| .| ...|+.+. | ..+++||+.+...++.+.+++. ..+
T Consensus 20 ~~~ll~~~~~~~~~~vLDiGcG~G-----~~---~~~la~~~---~-~~~v~gvD~s~~~i~~a~~~~~--------~~~ 79 (258)
T PRK01683 20 ARDLLARVPLENPRYVVDLGCGPG-----NS---TELLVERW---P-AARITGIDSSPAMLAEARSRLP--------DCQ 79 (258)
T ss_pred HHHHHhhCCCcCCCEEEEEcccCC-----HH---HHHHHHHC---C-CCEEEEEECCHHHHHHHHHhCC--------CCe
Confidence 556667666555678999997533 33 34566552 2 3699999988766665554421 133
Q ss_pred EEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEee
Q 040125 322 FSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLVEQ 384 (514)
Q Consensus 322 F~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkVvvlvE~ 384 (514)
|.. ..++++.+. ..=+.++. ...||++.+ ....+-+..+.|+|.-.+++..
T Consensus 80 ~~~--~d~~~~~~~----~~fD~v~~--~~~l~~~~d----~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 80 FVE--ADIASWQPP----QALDLIFA--NASLQWLPD----HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred EEE--CchhccCCC----CCccEEEE--ccChhhCCC----HHHHHHHHHHhcCCCcEEEEEC
Confidence 432 222222111 11234444 455687754 1223444457789987666653
No 27
>PRK06922 hypothetical protein; Provisional
Probab=76.92 E-value=1.1e+02 Score=35.62 Aligned_cols=110 Identities=15% Similarity=0.210 Sum_probs=58.7
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccC
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQ 333 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~ 333 (514)
.-.|+|+|.|. | .+...|+.+. | ..++|||+.+...++.+.+++. ..|.++++ +.....++.
T Consensus 419 g~rVLDIGCGT----G----~ls~~LA~~~---P-~~kVtGIDIS~~MLe~Ararl~----~~g~~ie~--I~gDa~dLp 480 (677)
T PRK06922 419 GDTIVDVGAGG----G----VMLDMIEEET---E-DKRIYGIDISENVIDTLKKKKQ----NEGRSWNV--IKGDAINLS 480 (677)
T ss_pred CCEEEEeCCCC----C----HHHHHHHHhC---C-CCEEEEEECCHHHHHHHHHHhh----hcCCCeEE--EEcchHhCc
Confidence 34799999753 3 3345566542 3 4899999999877777765532 33455444 222222221
Q ss_pred cccccccCCcEEEEEecccccccccc----c----cchHHHHHHHH-HhcCCc-EEEEEee
Q 040125 334 TKDIKVLENEVLVVNSILQLHCVVKE----S----RGALNSVLQII-HELSPK-VLVLVEQ 384 (514)
Q Consensus 334 ~~~l~~~~~EaLaVN~~~~Lh~l~~e----s----~~~~~~~L~~I-r~L~Pk-VvvlvE~ 384 (514)
.. ..++.+=+|-+.+.+|++.+- . ......+|+.+ +.|+|. .++++|.
T Consensus 481 -~~--fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 481 -SS--FEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred -cc--cCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 00 223333333345556776421 0 11234555554 789998 4555453
No 28
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=76.27 E-value=30 Score=34.39 Aligned_cols=105 Identities=27% Similarity=0.389 Sum_probs=58.6
Q ss_pred HHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEE
Q 040125 244 SILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFS 323 (514)
Q Consensus 244 AILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~ 323 (514)
.+++.+.-...-+|+|+|-|. | .+...|+.+- | ..++|||+.+...++.+ +..++.| .
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~----G----~~~~~l~~~~---p-~~~v~gvD~s~~~~~~a--------~~~~~~~--~ 77 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGP----G----NLTRYLARRW---P-GAVIEALDSSPEMVAAA--------RERGVDA--R 77 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCC----C----HHHHHHHHHC---C-CCEEEEEECCHHHHHHH--------HhcCCcE--E
Confidence 466666555567899999643 3 3455677653 3 36899999876555444 3335433 2
Q ss_pred eecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHH-HHHhcCCcEEEEEe
Q 040125 324 VVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQ-IIHELSPKVLVLVE 383 (514)
Q Consensus 324 ~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~-~Ir~L~PkVvvlvE 383 (514)
. ...+++.+. ..=+.|+.|. .||++.+ . ..+|+ ..+.|+|.-.+++.
T Consensus 78 ~--~d~~~~~~~----~~fD~v~~~~--~l~~~~d----~-~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 78 T--GDVRDWKPK----PDTDVVVSNA--ALQWVPE----H-ADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred E--cChhhCCCC----CCceEEEEeh--hhhhCCC----H-HHHHHHHHHhCCCCcEEEEE
Confidence 2 223333211 1224454444 4588753 1 34444 45779998655554
No 29
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=73.77 E-value=55 Score=34.67 Aligned_cols=116 Identities=18% Similarity=0.242 Sum_probs=65.4
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEE
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEF 322 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF 322 (514)
..+++.+.....=+|+|+|-|. | .+-..++.+. | ..++|+|+.+...++.+.+++.+ .++..++
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~----G----~ls~~la~~~---p-~~~v~~vDis~~Al~~A~~nl~~----n~l~~~~ 249 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGA----G----VLSAVLARHS---P-KIRLTLSDVSAAALESSRATLAA----NGLEGEV 249 (342)
T ss_pred HHHHHhccccCCCeEEEeccCc----C----HHHHHHHHhC---C-CCEEEEEECCHHHHHHHHHHHHH----cCCCCEE
Confidence 4445544432233799999653 3 2445566552 3 47899999998888777766543 4555555
Q ss_pred EeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 040125 323 SVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 323 ~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE 383 (514)
.... -++. + -..=+.|+.|-.| |...+........+++.+ +.|+|.-..++.
T Consensus 250 ~~~D-~~~~-----~-~~~fDlIvsNPPF--H~g~~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 250 FASN-VFSD-----I-KGRFDMIISNPPF--HDGIQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred EEcc-cccc-----c-CCCccEEEECCCc--cCCccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 3211 1111 1 1223678888776 654433333345566554 669998544443
No 30
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=73.46 E-value=17 Score=29.07 Aligned_cols=74 Identities=24% Similarity=0.351 Sum_probs=41.0
Q ss_pred EEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHH
Q 040125 290 LRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQ 369 (514)
Q Consensus 290 LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~ 369 (514)
.++|+++.+.+.++...+++ +..+++ |. ....+ .+...++-.=+|-+...+||+ . ....+++
T Consensus 20 ~~v~~~D~~~~~~~~~~~~~----~~~~~~--~~--~~d~~-----~l~~~~~sfD~v~~~~~~~~~-~----~~~~~l~ 81 (95)
T PF08241_consen 20 ASVTGIDISEEMLEQARKRL----KNEGVS--FR--QGDAE-----DLPFPDNSFDVVFSNSVLHHL-E----DPEAALR 81 (95)
T ss_dssp CEEEEEES-HHHHHHHHHHT----TTSTEE--EE--ESBTT-----SSSS-TT-EEEEEEESHGGGS-S----HHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHhcc----cccCch--he--eehHH-----hCccccccccccccccceeec-c----CHHHHHH
Confidence 79999998887666555543 334444 22 22233 344455555566666777887 2 2334444
Q ss_pred -HHHhcCCcEEEE
Q 040125 370 -IIHELSPKVLVL 381 (514)
Q Consensus 370 -~Ir~L~PkVvvl 381 (514)
..|-|+|.-..+
T Consensus 82 e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 82 EIYRVLKPGGRLV 94 (95)
T ss_dssp HHHHHEEEEEEEE
T ss_pred HHHHHcCcCeEEe
Confidence 447788875544
No 31
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=73.31 E-value=34 Score=34.02 Aligned_cols=112 Identities=14% Similarity=0.184 Sum_probs=60.6
Q ss_pred HHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEE
Q 040125 244 SILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFS 323 (514)
Q Consensus 244 AILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~ 323 (514)
.|++.+. .+.-+|+|+|.|. | .+...|+.+ + .++|+|+.+.+.++.+.+++ +..|+.-...
T Consensus 36 ~~l~~l~-~~~~~vLDiGcG~----G----~~a~~la~~-g-----~~v~~vD~s~~~l~~a~~~~----~~~g~~~~v~ 96 (255)
T PRK11036 36 RLLAELP-PRPLRVLDAGGGE----G----QTAIKLAEL-G-----HQVILCDLSAEMIQRAKQAA----EAKGVSDNMQ 96 (255)
T ss_pred HHHHhcC-CCCCEEEEeCCCc----h----HHHHHHHHc-C-----CEEEEEECCHHHHHHHHHHH----HhcCCccceE
Confidence 4666665 3456999999753 3 344556664 2 48999998887777766554 3345432223
Q ss_pred eecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEE
Q 040125 324 VVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLV 382 (514)
Q Consensus 324 ~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkVvvlv 382 (514)
.+....+++.+. .-..=++|+ |...||++.+ +...+-...+-|+|.-.+++
T Consensus 97 ~~~~d~~~l~~~--~~~~fD~V~--~~~vl~~~~~----~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 97 FIHCAAQDIAQH--LETPVDLIL--FHAVLEWVAD----PKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred EEEcCHHHHhhh--cCCCCCEEE--ehhHHHhhCC----HHHHHHHHHHHcCCCeEEEE
Confidence 333333333211 001113343 4455677643 22334444567899855543
No 32
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=72.82 E-value=9.6 Score=38.65 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=35.6
Q ss_pred CCceeEEEeeccccCCCCccchHHHHHHHhhcCC-CCCCcEEEeEecCChhHHHHHHHH
Q 040125 251 GESFVHVVDLGMTLGLPRGQQWRRLIESLANRAG-QPPRRLRITAVGLCVEKFQSIGDE 308 (514)
Q Consensus 251 g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~g-gpP~~LRIT~I~~~~~~l~etg~r 308 (514)
..+.++|.|.|.+ .|--.-+|--.|++.-. .++...+|+|++.+...++.+.+.
T Consensus 97 ~~~~~ri~d~GCg----tGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~ 151 (264)
T smart00138 97 HGRRVRIWSAGCS----TGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG 151 (264)
T ss_pred CCCCEEEEecccc----CChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC
Confidence 3457999999974 56665555544544321 112258999999998878776654
No 33
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=71.63 E-value=96 Score=29.61 Aligned_cols=115 Identities=19% Similarity=0.213 Sum_probs=57.2
Q ss_pred HHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEe
Q 040125 245 ILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSV 324 (514)
Q Consensus 245 ILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~ 324 (514)
+++.+.-....+|+|+|-+. |. +...++.+- |+ ..++|+++.+...++.+.+++... .+..+..|..
T Consensus 43 ~~~~~~~~~~~~vldiG~G~----G~----~~~~l~~~~--~~-~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~~~~~ 109 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGT----GD----LAIALAKAV--GK-TGEVVGLDFSEGMLAVGREKLRDL--GLSGNVEFVQ 109 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCC----CH----HHHHHHHHc--CC-CCeEEEEeCCHHHHHHHHHhhccc--ccccCeEEEe
Confidence 44444433457899999753 32 233344332 33 589999998876666665554321 1223344433
Q ss_pred ecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcE-EEEEee
Q 040125 325 VESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKV-LVLVEQ 384 (514)
Q Consensus 325 V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkV-vvlvE~ 384 (514)
. ...++. +....-+.|+. .+.||++.+ ...+|..+ +.|+|.- ++++|.
T Consensus 110 ~--d~~~~~---~~~~~~D~I~~--~~~l~~~~~-----~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 110 G--DAEALP---FPDNSFDAVTI--AFGLRNVPD-----IDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred c--ccccCC---CCCCCccEEEE--ecccccCCC-----HHHHHHHHHHhccCCcEEEEEEe
Confidence 2 222221 11111234433 344576543 34555554 6688874 444444
No 34
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=71.33 E-value=32 Score=35.14 Aligned_cols=139 Identities=19% Similarity=0.229 Sum_probs=69.3
Q ss_pred hhHhhhHHHHhhhc----CCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHH
Q 040125 237 GHFVANSSILEAFE----GESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDY 312 (514)
Q Consensus 237 ahftANqAILEA~~----g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~f 312 (514)
+++++-..||+.+. +-+--+|+|||-|-| .| =|.. .+.+ + ....+|.|+.+... .+++++|.+-
T Consensus 13 ~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpG--ta-~wAa-~~~~------~-~~~~~~~vd~s~~~-~~l~~~l~~~ 80 (274)
T PF09243_consen 13 ATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPG--TA-LWAA-REVW------P-SLKEYTCVDRSPEM-LELAKRLLRA 80 (274)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCceEEEecCChH--HH-HHHH-HHHh------c-CceeeeeecCCHHH-HHHHHHHHhc
Confidence 45566666666665 334569999997643 12 2322 1111 1 35789999976644 4566666543
Q ss_pred HHhcCCceEEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEeecCCCCCC
Q 040125 313 AKTYGINLEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVEQDSSHNGP 391 (514)
Q Consensus 313 A~~lgvpFeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE~ea~~nsp 391 (514)
...... .+... .+..+...+.+.+.|++. +.|-.|.+ ..+..+++.+ ..++| ++|+||...- .+-
T Consensus 81 ~~~~~~-~~~~~------~~~~~~~~~~~~DLvi~s--~~L~EL~~---~~r~~lv~~LW~~~~~-~LVlVEpGt~-~Gf 146 (274)
T PF09243_consen 81 GPNNRN-AEWRR------VLYRDFLPFPPDDLVIAS--YVLNELPS---AARAELVRSLWNKTAP-VLVLVEPGTP-AGF 146 (274)
T ss_pred cccccc-chhhh------hhhcccccCCCCcEEEEe--hhhhcCCc---hHHHHHHHHHHHhccC-cEEEEcCCCh-HHH
Confidence 322111 00110 111111223333433332 22333332 3456677777 44566 8888886543 233
Q ss_pred chHHHHHHHH
Q 040125 392 FFLGRFMEAL 401 (514)
Q Consensus 392 ~F~~RF~EAL 401 (514)
..+.+.++.|
T Consensus 147 ~~i~~aR~~l 156 (274)
T PF09243_consen 147 RRIAEARDQL 156 (274)
T ss_pred HHHHHHHHHH
Confidence 4455555555
No 35
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=71.16 E-value=71 Score=30.61 Aligned_cols=111 Identities=19% Similarity=0.190 Sum_probs=59.5
Q ss_pred hhHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc-
Q 040125 241 ANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN- 319 (514)
Q Consensus 241 ANqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp- 319 (514)
+++.+++.+.....-.|+|+|.|. |. +...||.+ | .+||||+.+...++...++ ++..|++
T Consensus 18 ~~~~l~~~l~~~~~~~vLDiGcG~----G~----~a~~La~~-g-----~~V~gvD~S~~~i~~a~~~----~~~~~~~~ 79 (197)
T PRK11207 18 THSEVLEAVKVVKPGKTLDLGCGN----GR----NSLYLAAN-G-----FDVTAWDKNPMSIANLERI----KAAENLDN 79 (197)
T ss_pred ChHHHHHhcccCCCCcEEEECCCC----CH----HHHHHHHC-C-----CEEEEEeCCHHHHHHHHHH----HHHcCCCc
Confidence 445666666554556899999753 32 33446654 2 4899999887666655443 3334443
Q ss_pred eEEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEE
Q 040125 320 LEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLV 380 (514)
Q Consensus 320 FeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvv 380 (514)
.++.. ..++++. +. ..=+.|+.+. .+|++.. ..+..+++.+ +.|+|.-.+
T Consensus 80 v~~~~--~d~~~~~---~~-~~fD~I~~~~--~~~~~~~---~~~~~~l~~i~~~LkpgG~~ 130 (197)
T PRK11207 80 LHTAV--VDLNNLT---FD-GEYDFILSTV--VLMFLEA---KTIPGLIANMQRCTKPGGYN 130 (197)
T ss_pred ceEEe--cChhhCC---cC-CCcCEEEEec--chhhCCH---HHHHHHHHHHHHHcCCCcEE
Confidence 33322 2233322 11 1124444443 3466542 2345566555 678998653
No 36
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=70.04 E-value=37 Score=35.94 Aligned_cols=119 Identities=18% Similarity=0.210 Sum_probs=65.9
Q ss_pred ceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhc---CCceEEEee----
Q 040125 253 SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTY---GINLEFSVV---- 325 (514)
Q Consensus 253 ~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~l---gvpFeF~~V---- 325 (514)
...+|+|++.|-| | .|.+-... .+ =++.||+.....++++.+|..+.-+.. ...+.|...
T Consensus 62 ~~~~VLDl~CGkG---G----DL~Kw~~~----~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~ 128 (331)
T PF03291_consen 62 PGLTVLDLCCGKG---G----DLQKWQKA----KI--KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAA 128 (331)
T ss_dssp TT-EEEEET-TTT---T----THHHHHHT----T---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEES
T ss_pred CCCeEEEecCCCc---h----hHHHHHhc----CC--CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheecc
Confidence 6789999998754 1 23333322 23 478999999999999999986555332 233344332
Q ss_pred cCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEE-EEEeecC
Q 040125 326 ESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVL-VLVEQDS 386 (514)
Q Consensus 326 ~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVv-vlvE~ea 386 (514)
.+..+.|. +.+.-..+..=+|+|+|.||+... +......+|+.| ..|+|.-+ +-+-.|+
T Consensus 129 D~f~~~l~-~~~~~~~~~FDvVScQFalHY~Fe-se~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 129 DCFSESLR-EKLPPRSRKFDVVSCQFALHYAFE-SEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TTCCSHHH-CTSSSTTS-EEEEEEES-GGGGGS-SHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred ccccchhh-hhccccCCCcceeehHHHHHHhcC-CHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 11111111 112222346779999999999875 333455566666 67899843 3334443
No 37
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=69.99 E-value=54 Score=33.38 Aligned_cols=109 Identities=19% Similarity=0.301 Sum_probs=59.0
Q ss_pred hHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceE
Q 040125 242 NSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLE 321 (514)
Q Consensus 242 NqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFe 321 (514)
.+.+++++.--+.-+|+|+|-|.| . +...|+.+ | .++|||+.+...++.+. +.|+..|++++
T Consensus 109 ~~~~~~~~~~~~~~~vLDlGcG~G----~----~~~~la~~-g-----~~V~avD~s~~ai~~~~----~~~~~~~l~v~ 170 (287)
T PRK12335 109 HSEVLEAVQTVKPGKALDLGCGQG----R----NSLYLALL-G-----FDVTAVDINQQSLENLQ----EIAEKENLNIR 170 (287)
T ss_pred cHHHHHHhhccCCCCEEEeCCCCC----H----HHHHHHHC-C-----CEEEEEECCHHHHHHHH----HHHHHcCCceE
Confidence 344555554322238999997543 2 33445653 2 58999998876666544 34566677666
Q ss_pred EEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEE
Q 040125 322 FSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVL 379 (514)
Q Consensus 322 F~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVv 379 (514)
+... .++... +. ..=+.|+.+. .||++..+ ....+|+.+ +.|+|.-+
T Consensus 171 ~~~~--D~~~~~---~~-~~fD~I~~~~--vl~~l~~~---~~~~~l~~~~~~LkpgG~ 218 (287)
T PRK12335 171 TGLY--DINSAS---IQ-EEYDFILSTV--VLMFLNRE---RIPAIIKNMQEHTNPGGY 218 (287)
T ss_pred EEEe--chhccc---cc-CCccEEEEcc--hhhhCCHH---HHHHHHHHHHHhcCCCcE
Confidence 6432 122211 10 1123444444 45776432 345666655 67899854
No 38
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=67.08 E-value=2.4 Score=43.04 Aligned_cols=112 Identities=21% Similarity=0.335 Sum_probs=63.9
Q ss_pred CceeEEEeeccccCCCCccchHHHHHHHhh--cCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeec---
Q 040125 252 ESFVHVVDLGMTLGLPRGQQWRRLIESLAN--RAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVE--- 326 (514)
Q Consensus 252 ~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~--R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~--- 326 (514)
.+.|||||+. -.|+-|-.|+.- +-..-|. +|--||.. +...+-+.+||+..|.++-.+-..
T Consensus 35 RngihIIDL~--------kT~~~l~~A~~~v~~~~~~~g--~ILfVgTK----~~a~~~V~~~A~r~g~~yV~~RwLgG~ 100 (252)
T COG0052 35 RNGIHIIDLQ--------KTLERLREAYKFLRRIAANGG--KILFVGTK----KQAQEPVKEFAERTGAYYVNGRWLGGM 100 (252)
T ss_pred cCCcEEEEHH--------HHHHHHHHHHHHHHHHHcCCC--EEEEEech----HHHHHHHHHHHHHhCCceecCcccCcc
Confidence 3689999998 477877766542 1111132 55566643 456677889999999987655321
Q ss_pred -CCccccCcc--ccc------------ccCCcEEEEEeccccccccccccchHHHHHHHHHhcC--CcEEEEEeecCC
Q 040125 327 -SNLENLQTK--DIK------------VLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELS--PKVLVLVEQDSS 387 (514)
Q Consensus 327 -~~lE~l~~~--~l~------------~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~--PkVvvlvE~ea~ 387 (514)
.+|..++.+ .|+ +.+.|++-. ......++.+|.-||.|+ |++++++++..+
T Consensus 101 LTN~~ti~~si~rl~~lE~~~~~~~~~~tKkE~l~l----------~re~~kL~k~lgGIk~m~~~Pd~l~ViDp~~e 168 (252)
T COG0052 101 LTNFKTIRKSIKRLKELEKMEEDGFDGLTKKEALML----------TRELEKLEKSLGGIKDMKGLPDVLFVIDPRKE 168 (252)
T ss_pred ccCchhHHHHHHHHHHHHHHhhcccccccHHHHHHH----------HHHHHHHHHhhcchhhccCCCCEEEEeCCcHh
Confidence 222222111 010 011222111 111234667888888886 999999987543
No 39
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=65.93 E-value=78 Score=30.01 Aligned_cols=22 Identities=0% Similarity=-0.002 Sum_probs=16.6
Q ss_pred ccchhhHHHHHhcCCceeccCC
Q 040125 449 HERVDQWRRRMSRAGFQAAPMK 470 (514)
Q Consensus 449 hE~~~~Wr~Rm~~AGF~~v~ls 470 (514)
.-+.+.+.+.++.+||+.+...
T Consensus 145 ~~s~~~~~~ll~~~Gf~v~~~~ 166 (194)
T TIGR02081 145 FCTIADFEDLCGELNLRILDRA 166 (194)
T ss_pred cCcHHHHHHHHHHCCCEEEEEE
Confidence 4466778888999999886653
No 40
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=64.29 E-value=1e+02 Score=30.18 Aligned_cols=105 Identities=17% Similarity=0.229 Sum_probs=60.0
Q ss_pred eEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc-eEEEeecCCccc-c
Q 040125 255 VHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN-LEFSVVESNLEN-L 332 (514)
Q Consensus 255 VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp-FeF~~V~~~lE~-l 332 (514)
-.|+|++-|.| .--+.+|+.. . -++|+|+...+.++.+.+.+.. .|+. .+| +...+.+ +
T Consensus 55 ~~vLDl~~GsG-------~l~l~~lsr~----a--~~V~~vE~~~~a~~~a~~Nl~~----~~~~~v~~--~~~D~~~~l 115 (199)
T PRK10909 55 ARCLDCFAGSG-------ALGLEALSRY----A--AGATLLEMDRAVAQQLIKNLAT----LKAGNARV--VNTNALSFL 115 (199)
T ss_pred CEEEEcCCCcc-------HHHHHHHHcC----C--CEEEEEECCHHHHHHHHHHHHH----hCCCcEEE--EEchHHHHH
Confidence 36899997543 2223455532 1 4899999887666666555433 3442 333 2222221 1
Q ss_pred CcccccccCCcEEEEEeccccccccccccchHHHHHHHHHh---cCCcEEEEEeecCCCC
Q 040125 333 QTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHE---LSPKVLVLVEQDSSHN 389 (514)
Q Consensus 333 ~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~---L~PkVvvlvE~ea~~n 389 (514)
. . . ..+=+.|++|=++. .+..+.++..|.. |.|+-+|++|.....+
T Consensus 116 ~-~-~-~~~fDlV~~DPPy~--------~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~~ 164 (199)
T PRK10909 116 A-Q-P-GTPHNVVFVDPPFR--------KGLLEETINLLEDNGWLADEALIYVESEVENG 164 (199)
T ss_pred h-h-c-CCCceEEEECCCCC--------CChHHHHHHHHHHCCCcCCCcEEEEEecCCCC
Confidence 1 0 0 11236777776652 1234567888877 6999999999776543
No 41
>PRK05785 hypothetical protein; Provisional
Probab=64.13 E-value=1.4e+02 Score=29.33 Aligned_cols=93 Identities=16% Similarity=0.135 Sum_probs=50.1
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccC
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQ 333 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~ 333 (514)
.-.|+|+|.| .|. +...|+.+. . .++|||+.+.+.++...++ .+ + +....+++
T Consensus 52 ~~~VLDlGcG----tG~----~~~~l~~~~---~--~~v~gvD~S~~Ml~~a~~~---------~~--~--~~~d~~~l- 104 (226)
T PRK05785 52 PKKVLDVAAG----KGE----LSYHFKKVF---K--YYVVALDYAENMLKMNLVA---------DD--K--VVGSFEAL- 104 (226)
T ss_pred CCeEEEEcCC----CCH----HHHHHHHhc---C--CEEEEECCCHHHHHHHHhc---------cc--e--EEechhhC-
Confidence 3479999974 442 234455543 1 4899999988777654332 11 1 22223333
Q ss_pred cccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 040125 334 TKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 334 ~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE 383 (514)
...++..=+|-+.+.||++.+ .+.+|+.+ |-|+|.++ ++|
T Consensus 105 ----p~~d~sfD~v~~~~~l~~~~d-----~~~~l~e~~RvLkp~~~-ile 145 (226)
T PRK05785 105 ----PFRDKSFDVVMSSFALHASDN-----IEKVIAEFTRVSRKQVG-FIA 145 (226)
T ss_pred ----CCCCCCEEEEEecChhhccCC-----HHHHHHHHHHHhcCceE-EEE
Confidence 233443434455567788654 23445544 56778543 444
No 42
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=63.52 E-value=1.1e+02 Score=29.52 Aligned_cols=115 Identities=21% Similarity=0.228 Sum_probs=62.5
Q ss_pred hhHhhhHHHHhhhc--CCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHH
Q 040125 237 GHFVANSSILEAFE--GESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAK 314 (514)
Q Consensus 237 ahftANqAILEA~~--g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~ 314 (514)
++-...+.+++.+. ..+.-+|+|+|-|. | .+...|+.+ . .+||||+.+.+.++...+++..
T Consensus 37 ~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~----G----~~~~~la~~----~--~~v~gvD~s~~~i~~a~~~~~~--- 99 (219)
T TIGR02021 37 GRAAMRRKLLDWLPKDPLKGKRVLDAGCGT----G----LLSIELAKR----G--AIVKAVDISEQMVQMARNRAQG--- 99 (219)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEeCCC----C----HHHHHHHHC----C--CEEEEEECCHHHHHHHHHHHHh---
Confidence 34555666777665 23457999999643 3 255556654 1 4899999888777777666543
Q ss_pred hcCC--ceEEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHh-cCCcEEEEE
Q 040125 315 TYGI--NLEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHE-LSPKVLVLV 382 (514)
Q Consensus 315 ~lgv--pFeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~-L~PkVvvlv 382 (514)
.++ .++|.. ..++++. ..=++++. ...++|+..+ ....+++.+.+ ++|.+++..
T Consensus 100 -~~~~~~i~~~~--~d~~~~~------~~fD~ii~--~~~l~~~~~~---~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 100 -RDVAGNVEFEV--NDLLSLC------GEFDIVVC--MDVLIHYPAS---DMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred -cCCCCceEEEE--CChhhCC------CCcCEEEE--hhHHHhCCHH---HHHHHHHHHHHHhCCCEEEEE
Confidence 233 345543 2233322 12233332 3334665432 23455665544 566655543
No 43
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=62.52 E-value=1.1e+02 Score=28.26 Aligned_cols=53 Identities=21% Similarity=0.234 Sum_probs=35.3
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHH
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDEL 309 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL 309 (514)
+.|++.+.-...=+|+|+|.|. -.|...|+.+ + -++|+|+.+...++.+.+++
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~--------G~lt~~l~~~-~-----~~v~~vE~~~~~~~~~~~~~ 55 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGK--------GALTEELLER-A-----ARVTAIEIDPRLAPRLREKF 55 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCc--------cHHHHHHHhc-C-----CeEEEEECCHHHHHHHHHHh
Confidence 3466666534444899999653 3566677776 2 37999998876666666554
No 44
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=61.87 E-value=1.3e+02 Score=31.69 Aligned_cols=138 Identities=17% Similarity=0.149 Sum_probs=81.5
Q ss_pred eEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc-eEEEeecCCccc--
Q 040125 255 VHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN-LEFSVVESNLEN-- 331 (514)
Q Consensus 255 VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp-FeF~~V~~~lE~-- 331 (514)
..|||||-| .|..=..|+++|... + .| .+-.+|+-+.+.|+++.++|. .-..| +++.+|....++
T Consensus 78 ~~lIELGsG----~~~Kt~~LL~aL~~~-~-~~--~~Y~plDIS~~~L~~a~~~L~----~~~~p~l~v~~l~gdy~~~l 145 (319)
T TIGR03439 78 SMLVELGSG----NLRKVGILLEALERQ-K-KS--VDYYALDVSRSELQRTLAELP----LGNFSHVRCAGLLGTYDDGL 145 (319)
T ss_pred CEEEEECCC----chHHHHHHHHHHHhc-C-CC--ceEEEEECCHHHHHHHHHhhh----hccCCCeEEEEEEecHHHHH
Confidence 479999974 678889999999732 2 33 688999999999999999987 12235 777777543322
Q ss_pred --cCcccccccCCcE-EEEEeccccccccccccchHHHHHHHHHh--cCCcEEEEEeecCC---------CCCC-ch-HH
Q 040125 332 --LQTKDIKVLENEV-LVVNSILQLHCVVKESRGALNSVLQIIHE--LSPKVLVLVEQDSS---------HNGP-FF-LG 395 (514)
Q Consensus 332 --l~~~~l~~~~~Ea-LaVN~~~~Lh~l~~es~~~~~~~L~~Ir~--L~PkVvvlvE~ea~---------~nsp-~F-~~ 395 (514)
+.... ..+.. ++.-.--.+.++ .+.....||+.+++ |+|.-..++--|.. +|.+ .. ..
T Consensus 146 ~~l~~~~---~~~~~r~~~flGSsiGNf---~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d~~gvTa~ 219 (319)
T TIGR03439 146 AWLKRPE---NRSRPTTILWLGSSIGNF---SRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYNDPGGVTRR 219 (319)
T ss_pred hhccccc---ccCCccEEEEeCccccCC---CHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcCCcchhHH
Confidence 21100 11222 222222233333 23345679999987 89975555544432 2332 22 23
Q ss_pred HHHHHHHHHHHHHhh
Q 040125 396 RFMEALHYYSAIFDS 410 (514)
Q Consensus 396 RF~EAL~yYsAlFDS 410 (514)
...+.|++--..++.
T Consensus 220 FnlN~L~~~Nr~Lg~ 234 (319)
T TIGR03439 220 FVLNGLVHANEILGS 234 (319)
T ss_pred HHHHHHHHHHHHhCc
Confidence 345666666666654
No 45
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=58.45 E-value=33 Score=31.19 Aligned_cols=50 Identities=28% Similarity=0.345 Sum_probs=30.1
Q ss_pred hcCCceeEEEeeccccCCCCccchHHHHHHHhhc--CCCCCCcEEEeEecCChhHHHHHHHH
Q 040125 249 FEGESFVHVVDLGMTLGLPRGQQWRRLIESLANR--AGQPPRRLRITAVGLCVEKFQSIGDE 308 (514)
Q Consensus 249 ~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R--~ggpP~~LRIT~I~~~~~~l~etg~r 308 (514)
-...+..+|||+|-|.| -|-..|+.. ... | .++|++|+......+..-++
T Consensus 21 ~~~~~~~~vvD~GsG~G--------yLs~~La~~l~~~~-~-~~~v~~iD~~~~~~~~a~~~ 72 (141)
T PF13679_consen 21 GESKRCITVVDLGSGKG--------YLSRALAHLLCNSS-P-NLRVLGIDCNESLVESAQKR 72 (141)
T ss_pred hccCCCCEEEEeCCChh--------HHHHHHHHHHHhcC-C-CCeEEEEECCcHHHHHHHHH
Confidence 34567899999997533 233334431 112 3 49999999876555444443
No 46
>PLN02244 tocopherol O-methyltransferase
Probab=58.21 E-value=1.5e+02 Score=31.19 Aligned_cols=102 Identities=18% Similarity=0.227 Sum_probs=55.6
Q ss_pred ceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCC--ceEEEeecCCcc
Q 040125 253 SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGI--NLEFSVVESNLE 330 (514)
Q Consensus 253 ~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgv--pFeF~~V~~~lE 330 (514)
+.-+|+|+|.|. | .+...|+.+.+ .++|||+.+...++...++ ++..|+ ..+|..- ...
T Consensus 118 ~~~~VLDiGCG~----G----~~~~~La~~~g-----~~v~gvD~s~~~i~~a~~~----~~~~g~~~~v~~~~~--D~~ 178 (340)
T PLN02244 118 RPKRIVDVGCGI----G----GSSRYLARKYG-----ANVKGITLSPVQAARANAL----AAAQGLSDKVSFQVA--DAL 178 (340)
T ss_pred CCCeEEEecCCC----C----HHHHHHHHhcC-----CEEEEEECCHHHHHHHHHH----HHhcCCCCceEEEEc--Ccc
Confidence 345799999653 2 24556666542 4899999877555544333 444454 3555432 222
Q ss_pred ccCcccccccCCcEEEEEeccccccccccccchHHHHHH-HHHhcCCcE-EEEEe
Q 040125 331 NLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQ-IIHELSPKV-LVLVE 383 (514)
Q Consensus 331 ~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~-~Ir~L~PkV-vvlvE 383 (514)
++ ...++..=+|-+...+||+.+ ...+|+ ..|-|+|.- +++++
T Consensus 179 ~~-----~~~~~~FD~V~s~~~~~h~~d-----~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 179 NQ-----PFEDGQFDLVWSMESGEHMPD-----KRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred cC-----CCCCCCccEEEECCchhccCC-----HHHHHHHHHHHcCCCcEEEEEE
Confidence 22 122333334445567788864 234554 457789973 44433
No 47
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=55.90 E-value=2.1e+02 Score=28.06 Aligned_cols=111 Identities=21% Similarity=0.288 Sum_probs=64.9
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEE
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEF 322 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF 322 (514)
..|++|++--+.-.++|+|-|.| . -+ --||++ -..+|+|+.+...++ +|.+.|+.-+++.+.
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~G----R--Na--lyLA~~------G~~VtAvD~s~~al~----~l~~~a~~~~l~i~~ 81 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEG----R--NA--LYLASQ------GFDVTAVDISPVALE----KLQRLAEEEGLDIRT 81 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTS----H--HH--HHHHHT------T-EEEEEESSHHHHH----HHHHHHHHTT-TEEE
T ss_pred HHHHHHHhhcCCCcEEEcCCCCc----H--HH--HHHHHC------CCeEEEEECCHHHHH----HHHHHHhhcCceeEE
Confidence 45777777666678999997644 1 22 236664 278999998875554 456778889999666
Q ss_pred EeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHH-hcCCcEEEEE
Q 040125 323 SVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIH-ELSPKVLVLV 382 (514)
Q Consensus 323 ~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir-~L~PkVvvlv 382 (514)
.... +++.. . +++.=+|.+...+++|..+ .++.++..++ .++|..+.+.
T Consensus 82 ~~~D--l~~~~-----~-~~~yD~I~st~v~~fL~~~---~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 82 RVAD--LNDFD-----F-PEEYDFIVSTVVFMFLQRE---LRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp EE-B--GCCBS-------TTTEEEEEEESSGGGS-GG---GHHHHHHHHHHTEEEEEEEEE
T ss_pred EEec--chhcc-----c-cCCcCEEEEEEEeccCCHH---HHHHHHHHHHhhcCCcEEEEE
Confidence 6532 33322 2 1233345555666777543 3567777775 4799744443
No 48
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=55.25 E-value=1.4e+02 Score=32.01 Aligned_cols=108 Identities=18% Similarity=0.298 Sum_probs=57.8
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEE
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEF 322 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF 322 (514)
..|++.+.-...-+|+|+|.| |-.+...++.+.+ .++|||+.+.+.++.+.++.. +++++|
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG--------~G~~a~~la~~~g-----~~V~giDlS~~~l~~A~~~~~------~l~v~~ 217 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCG--------WGGLARYAAEHYG-----VSVVGVTISAEQQKLAQERCA------GLPVEI 217 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCC--------ccHHHHHHHHHCC-----CEEEEEeCCHHHHHHHHHHhc------cCeEEE
Confidence 345555543344589999864 3345556666542 489999988877777666542 333444
Q ss_pred EeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 040125 323 SVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLV 382 (514)
Q Consensus 323 ~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlv 382 (514)
.. ....++ . ..=+.|+-+ ..++|+..+ ..+.+++.+ +-|+|.-.+++
T Consensus 218 ~~--~D~~~l-----~-~~fD~Ivs~--~~~ehvg~~---~~~~~l~~i~r~LkpGG~lvl 265 (383)
T PRK11705 218 RL--QDYRDL-----N-GQFDRIVSV--GMFEHVGPK---NYRTYFEVVRRCLKPDGLFLL 265 (383)
T ss_pred EE--Cchhhc-----C-CCCCEEEEe--CchhhCChH---HHHHHHHHHHHHcCCCcEEEE
Confidence 32 122222 1 111333333 334666331 234555555 66899855544
No 49
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=52.53 E-value=1.7e+02 Score=28.51 Aligned_cols=100 Identities=17% Similarity=0.156 Sum_probs=55.2
Q ss_pred EEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccCcc
Q 040125 256 HVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQTK 335 (514)
Q Consensus 256 HIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~~~ 335 (514)
.|+|+|.| .|.. +..|+.+. | ..++|||+.+.+.++.+.+++. ++. +.. ..+.+ +
T Consensus 46 ~VLDiGCG----~G~~----~~~L~~~~---~-~~~v~giDiS~~~l~~A~~~~~------~~~--~~~--~d~~~--~- 100 (204)
T TIGR03587 46 SILELGAN----IGMN----LAALKRLL---P-FKHIYGVEINEYAVEKAKAYLP------NIN--IIQ--GSLFD--P- 100 (204)
T ss_pred cEEEEecC----CCHH----HHHHHHhC---C-CCeEEEEECCHHHHHHHHhhCC------CCc--EEE--eeccC--C-
Confidence 58999975 4433 33344331 2 3689999998877776655421 222 221 11111 1
Q ss_pred cccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEeecC
Q 040125 336 DIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLVEQDS 386 (514)
Q Consensus 336 ~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkVvvlvE~ea 386 (514)
..++..=+|-+...|||+. +..+..+++.+.+..-+.++++|...
T Consensus 101 ---~~~~sfD~V~~~~vL~hl~---p~~~~~~l~el~r~~~~~v~i~e~~~ 145 (204)
T TIGR03587 101 ---FKDNFFDLVLTKGVLIHIN---PDNLPTAYRELYRCSNRYILIAEYYN 145 (204)
T ss_pred ---CCCCCEEEEEECChhhhCC---HHHHHHHHHHHHhhcCcEEEEEEeeC
Confidence 1122222223445567873 23456788888777777888888753
No 50
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=51.67 E-value=1.9e+02 Score=31.26 Aligned_cols=121 Identities=12% Similarity=0.116 Sum_probs=63.0
Q ss_pred HHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEE
Q 040125 244 SILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFS 323 (514)
Q Consensus 244 AILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~ 323 (514)
.+|+.+.....=+|+|+|.|.| . +--.|+.+. | ..+||+|+.+...++.+.+++......-.-.++|.
T Consensus 219 llL~~lp~~~~~~VLDLGCGtG----v----i~i~la~~~---P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~ 286 (378)
T PRK15001 219 FFMQHLPENLEGEIVDLGCGNG----V----IGLTLLDKN---P-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFM 286 (378)
T ss_pred HHHHhCCcccCCeEEEEecccc----H----HHHHHHHhC---C-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEE
Confidence 3444443322227999997643 2 334555552 4 58999999988777777766543321111134443
Q ss_pred eecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHH-HHHhcCCcEEEEEee
Q 040125 324 VVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQ-IIHELSPKVLVLVEQ 384 (514)
Q Consensus 324 ~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~-~Ir~L~PkVvvlvE~ 384 (514)
. ..-++.+.. ..=+.|+.|-.|...+-..+ .....+++ .-+.|+|.-.+.++.
T Consensus 287 ~-~D~l~~~~~-----~~fDlIlsNPPfh~~~~~~~--~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 287 I-NNALSGVEP-----FRFNAVLCNPPFHQQHALTD--NVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred E-ccccccCCC-----CCEEEEEECcCcccCccCCH--HHHHHHHHHHHHhcccCCEEEEEE
Confidence 2 111222211 12257788878743222211 12234444 456799986555553
No 51
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=50.60 E-value=2.1e+02 Score=26.47 Aligned_cols=81 Identities=14% Similarity=0.118 Sum_probs=41.5
Q ss_pred eEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-
Q 040125 293 TAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII- 371 (514)
Q Consensus 293 T~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I- 371 (514)
|||+.+.+-++...++...-+....-..+|.. ...+++. ..++..=+|-+.+.||++.+ ...+|+.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~--~d~~~lp-----~~~~~fD~v~~~~~l~~~~d-----~~~~l~ei~ 68 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIE--GDAIDLP-----FDDCEFDAVTMGYGLRNVVD-----RLRAMKEMY 68 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEE--echhhCC-----CCCCCeeEEEecchhhcCCC-----HHHHHHHHH
Confidence 67888887777766665432222222344432 2233332 22332223334567788753 23455544
Q ss_pred HhcCCc-EEEEEeec
Q 040125 372 HELSPK-VLVLVEQD 385 (514)
Q Consensus 372 r~L~Pk-VvvlvE~e 385 (514)
|-|+|. .+++.|-.
T Consensus 69 rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 69 RVLKPGSRVSILDFN 83 (160)
T ss_pred HHcCcCeEEEEEECC
Confidence 679998 44455544
No 52
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=48.80 E-value=84 Score=31.85 Aligned_cols=67 Identities=24% Similarity=0.341 Sum_probs=42.4
Q ss_pred hhCCCccchh-HhhhHHHHh----hhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHH
Q 040125 229 EICPHIQFGH-FVANSSILE----AFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQ 303 (514)
Q Consensus 229 e~sP~~kfah-ftANqAILE----A~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~ 303 (514)
...|=-++++ |..|+.|++ .+.-.+.-+|+|+|-|. -.+...|+.+. + ++|||+.+...++
T Consensus 13 ~~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~--------G~lt~~L~~~~---~---~v~avE~d~~~~~ 78 (272)
T PRK00274 13 GHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGL--------GALTEPLLERA---A---KVTAVEIDRDLAP 78 (272)
T ss_pred CCCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCc--------cHHHHHHHHhC---C---cEEEEECCHHHHH
Confidence 4455566665 666665554 33334456899999653 25667777762 2 7899998876666
Q ss_pred HHHHHH
Q 040125 304 SIGDEL 309 (514)
Q Consensus 304 etg~rL 309 (514)
.+.+++
T Consensus 79 ~~~~~~ 84 (272)
T PRK00274 79 ILAETF 84 (272)
T ss_pred HHHHhh
Confidence 554433
No 53
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=48.18 E-value=2.5e+02 Score=26.77 Aligned_cols=98 Identities=22% Similarity=0.330 Sum_probs=51.2
Q ss_pred ceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCC--ceEEEeecCCcc
Q 040125 253 SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGI--NLEFSVVESNLE 330 (514)
Q Consensus 253 ~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgv--pFeF~~V~~~lE 330 (514)
..-.|+|+|.| .|. +...|+.+ + .++|+|+.+...++.+.+++.+ .++ ..+|.... ++
T Consensus 63 ~~~~vLDvGcG----~G~----~~~~l~~~-~-----~~v~~~D~s~~~i~~a~~~~~~----~~~~~~i~~~~~d--~~ 122 (230)
T PRK07580 63 TGLRILDAGCG----VGS----LSIPLARR-G-----AKVVASDISPQMVEEARERAPE----AGLAGNITFEVGD--LE 122 (230)
T ss_pred CCCEEEEEeCC----CCH----HHHHHHHc-C-----CEEEEEECCHHHHHHHHHHHHh----cCCccCcEEEEcC--ch
Confidence 45689999964 332 33445543 1 2499999988777777665433 333 34444321 22
Q ss_pred ccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEE
Q 040125 331 NLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVL 381 (514)
Q Consensus 331 ~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkVvvl 381 (514)
... ..=+.++. ...|||..++ ....+++.+.++.+..+++
T Consensus 123 ~~~------~~fD~v~~--~~~l~~~~~~---~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 123 SLL------GRFDTVVC--LDVLIHYPQE---DAARMLAHLASLTRGSLIF 162 (230)
T ss_pred hcc------CCcCEEEE--cchhhcCCHH---HHHHHHHHHHhhcCCeEEE
Confidence 111 11133333 3345665432 3456777776654443333
No 54
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=47.72 E-value=1.1e+02 Score=29.21 Aligned_cols=115 Identities=12% Similarity=0.116 Sum_probs=57.6
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccC
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQ 333 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~ 333 (514)
.--|+|+|.|.| .++-.||.+. | ...++||+.+.+.++.+.+++. ..|+. ..+.+.....++.
T Consensus 17 ~~~ilDiGcG~G--------~~~~~la~~~---p-~~~v~gvD~~~~~l~~a~~~~~----~~~l~-ni~~i~~d~~~~~ 79 (194)
T TIGR00091 17 APLHLEIGCGKG--------RFLIDMAKQN---P-DKNFLGIEIHTPIVLAANNKAN----KLGLK-NLHVLCGDANELL 79 (194)
T ss_pred CceEEEeCCCcc--------HHHHHHHHhC---C-CCCEEEEEeeHHHHHHHHHHHH----HhCCC-CEEEEccCHHHHH
Confidence 346999996532 4455666553 3 4789999988877776666554 34443 2223333333321
Q ss_pred cccccccCCcEEEEEecccccccccccc-chHHHHHHHH-HhcCCcEEEEEeec
Q 040125 334 TKDIKVLENEVLVVNSILQLHCVVKESR-GALNSVLQII-HELSPKVLVLVEQD 385 (514)
Q Consensus 334 ~~~l~~~~~EaLaVN~~~~Lh~l~~es~-~~~~~~L~~I-r~L~PkVvvlvE~e 385 (514)
...+.-..=+.+.+|+..-.+.-..... -....+|+.+ +.|+|.-.+.+..|
T Consensus 80 ~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 80 DKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred HhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 1111101113566665432111000000 0114577765 66899866655443
No 55
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=47.44 E-value=2.6e+02 Score=26.63 Aligned_cols=97 Identities=22% Similarity=0.324 Sum_probs=51.7
Q ss_pred eEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccCc
Q 040125 255 VHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQT 334 (514)
Q Consensus 255 VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~~ 334 (514)
-+|+|+|-|.| ..++. |+... | ..++|+|+.+...++.+.++ ++..|++ .+..+...++++..
T Consensus 44 ~~vLDiGcGtG------~~s~~--la~~~---~-~~~V~~iD~s~~~~~~a~~~----~~~~~~~-~i~~i~~d~~~~~~ 106 (181)
T TIGR00138 44 KKVIDIGSGAG------FPGIP--LAIAR---P-ELKLTLLESNHKKVAFLREV----KAELGLN-NVEIVNGRAEDFQH 106 (181)
T ss_pred CeEEEecCCCC------ccHHH--HHHHC---C-CCeEEEEeCcHHHHHHHHHH----HHHhCCC-CeEEEecchhhccc
Confidence 48999997532 22222 22221 3 36899999887666555443 4445664 23334444444421
Q ss_pred ccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 040125 335 KDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 335 ~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE 383 (514)
...=+.|+.|+ +|++ +.++..+ +-|+|.-.+++.
T Consensus 107 ----~~~fD~I~s~~---~~~~--------~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 107 ----EEQFDVITSRA---LASL--------NVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred ----cCCccEEEehh---hhCH--------HHHHHHHHHhcCCCCEEEEE
Confidence 11224565554 3432 2345544 458999777765
No 56
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=45.81 E-value=76 Score=32.37 Aligned_cols=99 Identities=22% Similarity=0.308 Sum_probs=64.4
Q ss_pred ceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCcccc
Q 040125 253 SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENL 332 (514)
Q Consensus 253 ~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l 332 (514)
...-|+|+|.| .| .|-+.||+. | ..+|||+.+...++.... .|.+-|+..+|.... .|+|
T Consensus 59 ~g~~vLDvGCG----gG----~Lse~mAr~-G-----a~VtgiD~se~~I~~Ak~----ha~e~gv~i~y~~~~--~edl 118 (243)
T COG2227 59 PGLRVLDVGCG----GG----ILSEPLARL-G-----ASVTGIDASEKPIEVAKL----HALESGVNIDYRQAT--VEDL 118 (243)
T ss_pred CCCeEEEecCC----cc----HhhHHHHHC-C-----CeeEEecCChHHHHHHHH----hhhhccccccchhhh--HHHH
Confidence 45679999975 23 677888864 2 799999987766665543 477778887776643 3443
Q ss_pred CcccccccCCcEEEEEeccccccccccccchHHHHHHH-HHhcCCcEEEE
Q 040125 333 QTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQI-IHELSPKVLVL 381 (514)
Q Consensus 333 ~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~-Ir~L~PkVvvl 381 (514)
... .+-.=||-||=-|+|+.+. +.|++. .+-++|.-+++
T Consensus 119 ~~~-----~~~FDvV~cmEVlEHv~dp-----~~~~~~c~~lvkP~G~lf 158 (243)
T COG2227 119 ASA-----GGQFDVVTCMEVLEHVPDP-----ESFLRACAKLVKPGGILF 158 (243)
T ss_pred Hhc-----CCCccEEEEhhHHHccCCH-----HHHHHHHHHHcCCCcEEE
Confidence 322 1334467788888998763 345554 46679974443
No 57
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=45.65 E-value=73 Score=31.00 Aligned_cols=114 Identities=15% Similarity=0.141 Sum_probs=66.9
Q ss_pred ceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEE------eEecCChhHHHHHHHHHHHHHHhcCCceEEEeec
Q 040125 253 SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRI------TAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVE 326 (514)
Q Consensus 253 ~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRI------T~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~ 326 (514)
.+|+||.|--+. ..-+..=.++|.+|+.+ .+.+ |+|. -.+....++.-+..|+++.++.|-|.++.
T Consensus 59 GKV~lvn~~Asw-c~~c~~e~P~l~~l~~~------~~~~~~y~~t~~IN-~dd~~~~~~~fVk~fie~~~~~~P~~~vl 130 (184)
T TIGR01626 59 GKVRVVHHIAGR-TSAKEXNASLIDAIKAA------KFPPVKYQTTTIIN-ADDAIVGTGMFVKSSAKKGKKENPWSQVV 130 (184)
T ss_pred CCEEEEEEEecC-CChhhccchHHHHHHHc------CCCcccccceEEEE-CccchhhHHHHHHHHHHHhcccCCcceEE
Confidence 589999997542 12345666899999654 2556 6776 33456778889999999999888766553
Q ss_pred CCccccCcccccccC-CcE-EEEEecccccccccc--ccchHHHHHHHHHhc
Q 040125 327 SNLENLQTKDIKVLE-NEV-LVVNSILQLHCVVKE--SRGALNSVLQIIHEL 374 (514)
Q Consensus 327 ~~lE~l~~~~l~~~~-~Ea-LaVN~~~~Lh~l~~e--s~~~~~~~L~~Ir~L 374 (514)
..-+......+++.. .++ ++||-.-.+...-.. +....+.++..|++|
T Consensus 131 lD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~li~~l 182 (184)
T TIGR01626 131 LDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVISLVNGL 182 (184)
T ss_pred ECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 111211122344433 255 577666544322111 112334566666654
No 58
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=45.15 E-value=2.1e+02 Score=29.86 Aligned_cols=113 Identities=13% Similarity=0.104 Sum_probs=53.9
Q ss_pred HHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEE
Q 040125 244 SILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFS 323 (514)
Q Consensus 244 AILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~ 323 (514)
.|++.+..-+.-+|+|+|.|.| .++..++.+ | |. +++||+++...+... +...+++.. +.+.+|.
T Consensus 113 ~l~~~l~~l~g~~VLDIGCG~G--------~~~~~la~~--g-~~--~V~GiD~S~~~l~q~-~a~~~~~~~-~~~i~~~ 177 (322)
T PRK15068 113 RVLPHLSPLKGRTVLDVGCGNG--------YHMWRMLGA--G-AK--LVVGIDPSQLFLCQF-EAVRKLLGN-DQRAHLL 177 (322)
T ss_pred HHHHhhCCCCCCEEEEeccCCc--------HHHHHHHHc--C-CC--EEEEEcCCHHHHHHH-HHHHHhcCC-CCCeEEE
Confidence 3344553222347999997543 222345544 2 32 599999876444221 111122211 2234454
Q ss_pred eecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEe
Q 040125 324 VVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLVE 383 (514)
Q Consensus 324 ~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkVvvlvE 383 (514)
. ..++++.. ++-.=+|-|+..|||+.+ +...+-..-+.|+|.-.++.+
T Consensus 178 ~--~d~e~lp~------~~~FD~V~s~~vl~H~~d----p~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 178 P--LGIEQLPA------LKAFDTVFSMGVLYHRRS----PLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred e--CCHHHCCC------cCCcCEEEECChhhccCC----HHHHHHHHHHhcCCCcEEEEE
Confidence 3 23444421 111112334455788643 334444555778998666554
No 59
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=44.94 E-value=78 Score=30.83 Aligned_cols=59 Identities=10% Similarity=0.120 Sum_probs=46.5
Q ss_pred ccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCC
Q 040125 269 GQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESN 328 (514)
Q Consensus 269 G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~ 328 (514)
+..||-++..+..+...-+ .-.|+-.+.+.++|+.+++-..++++..|.++++..-.+.
T Consensus 9 S~~~~~~l~~~l~~~~~l~-~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~ 67 (183)
T PF02056_consen 9 STYFPLLLLGDLLRTEELS-GSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDR 67 (183)
T ss_dssp SCCHHHHHHHHHHCTTTST-EEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSH
T ss_pred hHhhHHHHHHHHhcCccCC-CcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCH
Confidence 7899988877666655444 4577777788899999999999999999999999876543
No 60
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=43.96 E-value=2e+02 Score=27.21 Aligned_cols=99 Identities=23% Similarity=0.325 Sum_probs=51.8
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccC
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQ 333 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~ 333 (514)
..+|+|+|-|. |. +...|+.+ + | ..++|+|+.+...++...+++. -.++| +...++++.
T Consensus 35 ~~~vLDlG~G~----G~----~~~~l~~~--~-~-~~~~~~~D~~~~~~~~~~~~~~-------~~~~~--~~~d~~~~~ 93 (240)
T TIGR02072 35 PASVLDIGCGT----GY----LTRALLKR--F-P-QAEFIALDISAGMLAQAKTKLS-------ENVQF--ICGDAEKLP 93 (240)
T ss_pred CCeEEEECCCc----cH----HHHHHHHh--C-C-CCcEEEEeChHHHHHHHHHhcC-------CCCeE--EecchhhCC
Confidence 46899999653 32 33344443 2 3 4689999988766666555443 12233 222333322
Q ss_pred cccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 040125 334 TKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 334 ~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE 383 (514)
.. -..-++|+ +...||++.+ ...+|..+ +.|+|.-++++.
T Consensus 94 ~~---~~~fD~vi--~~~~l~~~~~-----~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 94 LE---DSSFDLIV--SNLALQWCDD-----LSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred CC---CCceeEEE--EhhhhhhccC-----HHHHHHHHHHHcCCCcEEEEE
Confidence 11 11123443 3445677633 24566655 568998655554
No 61
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=43.44 E-value=1.1e+02 Score=31.12 Aligned_cols=111 Identities=21% Similarity=0.292 Sum_probs=67.0
Q ss_pred hcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCC
Q 040125 249 FEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESN 328 (514)
Q Consensus 249 ~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~ 328 (514)
+.-+.---|+|+|.|- |.+ -+-|++|= | -=.||||+++.+.+++..++ ..+.+|.. ..
T Consensus 26 Vp~~~~~~v~DLGCGp----Gns----TelL~~Rw---P-~A~i~GiDsS~~Mla~Aa~r--------lp~~~f~~--aD 83 (257)
T COG4106 26 VPLERPRRVVDLGCGP----GNS----TELLARRW---P-DAVITGIDSSPAMLAKAAQR--------LPDATFEE--AD 83 (257)
T ss_pred CCccccceeeecCCCC----CHH----HHHHHHhC---C-CCeEeeccCCHHHHHHHHHh--------CCCCceec--cc
Confidence 3445556799999764 333 34566664 3 35799999998877766554 34445532 11
Q ss_pred ccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEeecCCCCCC
Q 040125 329 LENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLVEQDSSHNGP 391 (514)
Q Consensus 329 lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkVvvlvE~ea~~nsp 391 (514)
+.+.+++ .+-..|.-|.+| |-|++. .+-|-+.+-.|.|.-+.-|---.|+..|
T Consensus 84 l~~w~p~----~~~dllfaNAvl--qWlpdH----~~ll~rL~~~L~Pgg~LAVQmPdN~dep 136 (257)
T COG4106 84 LRTWKPE----QPTDLLFANAVL--QWLPDH----PELLPRLVSQLAPGGVLAVQMPDNLDEP 136 (257)
T ss_pred HhhcCCC----Cccchhhhhhhh--hhcccc----HHHHHHHHHhhCCCceEEEECCCccCch
Confidence 2222221 233466777777 445543 2457777888999988777655555544
No 62
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=42.82 E-value=95 Score=26.22 Aligned_cols=44 Identities=20% Similarity=0.235 Sum_probs=29.1
Q ss_pred EEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHH
Q 040125 256 HVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKD 311 (514)
Q Consensus 256 HIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~ 311 (514)
+|+|+|.|.| .+...++.+. | ..++|+|+.+...++.+.+++..
T Consensus 22 ~vldlG~G~G--------~~~~~l~~~~---~-~~~v~~vD~s~~~~~~a~~~~~~ 65 (124)
T TIGR02469 22 VLWDIGAGSG--------SITIEAARLV---P-NGRVYAIERNPEALRLIERNARR 65 (124)
T ss_pred EEEEeCCCCC--------HHHHHHHHHC---C-CceEEEEcCCHHHHHHHHHHHHH
Confidence 8999997543 3344455542 3 37899999887777766655444
No 63
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=42.71 E-value=3.3e+02 Score=26.72 Aligned_cols=54 Identities=22% Similarity=0.377 Sum_probs=33.3
Q ss_pred hhHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHH
Q 040125 241 ANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDE 308 (514)
Q Consensus 241 ANqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~r 308 (514)
.-+.+++.+.....-+|+|+|.|. | .+.+.|+.+ + -++|+|+.+...++...++
T Consensus 30 ~a~~l~~~l~~~~~~~vLDiGcG~----G----~~~~~l~~~-~-----~~v~~~D~s~~~l~~a~~~ 83 (251)
T PRK10258 30 SADALLAMLPQRKFTHVLDAGCGP----G----WMSRYWRER-G-----SQVTALDLSPPMLAQARQK 83 (251)
T ss_pred HHHHHHHhcCccCCCeEEEeeCCC----C----HHHHHHHHc-C-----CeEEEEECCHHHHHHHHhh
Confidence 334555666544445799999753 3 245566653 2 4799999887666554443
No 64
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=42.29 E-value=3.6e+02 Score=26.83 Aligned_cols=101 Identities=22% Similarity=0.298 Sum_probs=52.3
Q ss_pred eEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc-eEEEeecCCccccC
Q 040125 255 VHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN-LEFSVVESNLENLQ 333 (514)
Q Consensus 255 VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp-FeF~~V~~~lE~l~ 333 (514)
=+|+|+|.|- | .|..+ ++... + | .-+||+|+.+...++.+.++. +..|++ .+| +...++++.
T Consensus 79 ~~VLDiG~G~----G-~~~~~---~a~~~-g-~-~~~v~gvD~s~~~l~~A~~~~----~~~g~~~v~~--~~~d~~~l~ 141 (272)
T PRK11873 79 ETVLDLGSGG----G-FDCFL---AARRV-G-P-TGKVIGVDMTPEMLAKARANA----RKAGYTNVEF--RLGEIEALP 141 (272)
T ss_pred CEEEEeCCCC----C-HHHHH---HHHHh-C-C-CCEEEEECCCHHHHHHHHHHH----HHcCCCCEEE--EEcchhhCC
Confidence 3899999752 3 22222 22222 2 2 368999998877776665543 334442 333 223344432
Q ss_pred cccccccCC--cEEEEEeccccccccccccchHHHHHHHHHhcCCcE-EEEEe
Q 040125 334 TKDIKVLEN--EVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKV-LVLVE 383 (514)
Q Consensus 334 ~~~l~~~~~--EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkV-vvlvE 383 (514)
..++ +.|+.|+.+ |+..+ ....+=...+-|+|.- +++++
T Consensus 142 -----~~~~~fD~Vi~~~v~--~~~~d----~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 142 -----VADNSVDVIISNCVI--NLSPD----KERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred -----CCCCceeEEEEcCcc--cCCCC----HHHHHHHHHHHcCCCcEEEEEE
Confidence 2222 355556655 55443 1223444557789984 44444
No 65
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=41.41 E-value=40 Score=33.07 Aligned_cols=55 Identities=20% Similarity=0.279 Sum_probs=38.7
Q ss_pred hhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHH
Q 040125 247 EAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYA 313 (514)
Q Consensus 247 EA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA 313 (514)
-+++=.+.=|++|+|-+-| +-+++|. + + .| ..|+++|+.+.+.++.+.+++.+|-
T Consensus 28 s~L~~~~g~~l~DIGaGtG-si~iE~a-~----~-----~p-~~~v~AIe~~~~a~~~~~~N~~~fg 82 (187)
T COG2242 28 SKLRPRPGDRLWDIGAGTG-SITIEWA-L----A-----GP-SGRVIAIERDEEALELIERNAARFG 82 (187)
T ss_pred HhhCCCCCCEEEEeCCCcc-HHHHHHH-H----h-----CC-CceEEEEecCHHHHHHHHHHHHHhC
Confidence 3344334449999998765 5566775 2 1 24 6999999999888988988866554
No 66
>PRK04148 hypothetical protein; Provisional
Probab=39.97 E-value=1.7e+02 Score=27.09 Aligned_cols=69 Identities=16% Similarity=0.296 Sum_probs=43.5
Q ss_pred HHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHH----------------------
Q 040125 245 ILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKF---------------------- 302 (514)
Q Consensus 245 ILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l---------------------- 302 (514)
|.+.....+.-.|+|.|+|+| ..+-+.|++. | ..+|+|+.+....
T Consensus 8 l~~~~~~~~~~kileIG~GfG-------~~vA~~L~~~-G-----~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~ 74 (134)
T PRK04148 8 IAENYEKGKNKKIVELGIGFY-------FKVAKKLKES-G-----FDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEI 74 (134)
T ss_pred HHHhcccccCCEEEEEEecCC-------HHHHHHHHHC-C-----CEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHH
Confidence 445555555567999998654 4556667643 2 4788887543211
Q ss_pred -------------HHHHHHHHHHHHhcCCceEEEeec
Q 040125 303 -------------QSIGDELKDYAKTYGINLEFSVVE 326 (514)
Q Consensus 303 -------------~etg~rL~~fA~~lgvpFeF~~V~ 326 (514)
.|+..-+.+.|++.|.++-+.++.
T Consensus 75 y~~a~liysirpp~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 75 YKNAKLIYSIRPPRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred HhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 455666777777777777777654
No 67
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=38.36 E-value=4e+02 Score=26.23 Aligned_cols=37 Identities=14% Similarity=-0.099 Sum_probs=24.5
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHH
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQS 304 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~e 304 (514)
.-.|+|.|-|.| .=+..||.+ -..+|||+.+...++.
T Consensus 38 ~~rvL~~gCG~G--------~da~~LA~~------G~~V~avD~s~~Ai~~ 74 (218)
T PRK13255 38 GSRVLVPLCGKS--------LDMLWLAEQ------GHEVLGVELSELAVEQ 74 (218)
T ss_pred CCeEEEeCCCCh--------HhHHHHHhC------CCeEEEEccCHHHHHH
Confidence 347899987543 223446654 2689999988766664
No 68
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=36.46 E-value=68 Score=23.58 Aligned_cols=39 Identities=21% Similarity=0.372 Sum_probs=24.4
Q ss_pred cEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEe
Q 040125 343 EVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLVE 383 (514)
Q Consensus 343 EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkVvvlvE 383 (514)
|.+-|||...--++... ...+.++..|+.++|+-+++|-
T Consensus 1 e~i~v~a~v~~~~fSgH--ad~~~L~~~i~~~~p~~vilVH 39 (43)
T PF07521_consen 1 EMIPVRARVEQIDFSGH--ADREELLEFIEQLNPRKVILVH 39 (43)
T ss_dssp CEEE--SEEEESGCSSS---BHHHHHHHHHHHCSSEEEEES
T ss_pred CEEEeEEEEEEEeecCC--CCHHHHHHHHHhcCCCEEEEec
Confidence 34566766532224332 3467899999999999888874
No 69
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=35.85 E-value=2.1e+02 Score=31.25 Aligned_cols=82 Identities=16% Similarity=0.282 Sum_probs=44.9
Q ss_pred cEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEeecCCCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCHHH
Q 040125 343 EVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKR 422 (514)
Q Consensus 343 EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkVvvlvE~ea~~nsp~F~~RF~EAL~yYsAlFDSLda~lp~~~~eR 422 (514)
+.++||+.-..+= -+.++-....|...+|+.|+..|.+ |...++.+=.+...| ...-+...++.-.||
T Consensus 173 ~~ilIdT~GWi~G-----~~g~elk~~li~~ikP~~Ii~l~~~---~~~~~l~~~~~~~~~----~~~~~~~~~~sR~ER 240 (398)
T COG1341 173 DFILIDTDGWIKG-----WGGLELKRALIDAIKPDLIIALERA---NELSPLLEGVESIVY----LKVPDAVAPRSREER 240 (398)
T ss_pred CEEEEcCCCceeC-----chHHHHHHHHHhhcCCCEEEEeccc---cccchhhhcccCceE----EeccccccccChhHH
Confidence 3557776654431 1345667788899999999999876 333433333333333 333344445544555
Q ss_pred HHHHHHHHHHHHhH
Q 040125 423 AKIEQFYFAEEIKN 436 (514)
Q Consensus 423 ~~iE~~~lg~eI~N 436 (514)
+.+=..-+++.+.+
T Consensus 241 ~~~R~e~~~ryf~~ 254 (398)
T COG1341 241 KELREEKYRRYFEG 254 (398)
T ss_pred HHHHHHHHHHhccC
Confidence 54433334555544
No 70
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=35.19 E-value=2.9e+02 Score=26.46 Aligned_cols=99 Identities=13% Similarity=0.197 Sum_probs=51.5
Q ss_pred EEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccCcc
Q 040125 256 HVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQTK 335 (514)
Q Consensus 256 HIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~~~ 335 (514)
+|+|+|-+. -.+...++.+. | ..++|||+.+.+.++...+++ +..|+.-....+....++....
T Consensus 2 ~vLDiGcG~--------G~~~~~la~~~---~-~~~v~gid~s~~~~~~a~~~~----~~~gl~~~i~~~~~d~~~~~~~ 65 (224)
T smart00828 2 RVLDFGCGY--------GSDLIDLAERH---P-HLQLHGYTISPEQAEVGRERI----RALGLQGRIRIFYRDSAKDPFP 65 (224)
T ss_pred eEEEECCCC--------CHHHHHHHHHC---C-CCEEEEEECCHHHHHHHHHHH----HhcCCCcceEEEecccccCCCC
Confidence 689998643 23455666543 2 368999998776666665554 3345543333222222111100
Q ss_pred cccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEE
Q 040125 336 DIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVL 381 (514)
Q Consensus 336 ~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvl 381 (514)
..=+.|+ +...+||+.+ ...+|+.+ +.|+|.-.++
T Consensus 66 ----~~fD~I~--~~~~l~~~~~-----~~~~l~~~~~~LkpgG~l~ 101 (224)
T smart00828 66 ----DTYDLVF--GFEVIHHIKD-----KMDLFSNISRHLKDGGHLV 101 (224)
T ss_pred ----CCCCEee--hHHHHHhCCC-----HHHHHHHHHHHcCCCCEEE
Confidence 1112333 3344577643 34666666 5589984443
No 71
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=34.99 E-value=4.2e+02 Score=25.47 Aligned_cols=56 Identities=11% Similarity=0.138 Sum_probs=33.5
Q ss_pred HHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHH
Q 040125 244 SILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELK 310 (514)
Q Consensus 244 AILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~ 310 (514)
.++++++-...-+|+|+|-| ..|.+ ..|+..-+ +. -++++|+.+.+.++.+.+++.
T Consensus 63 ~~~~~l~~~~~~~VLDiG~G------sG~~~--~~la~~~~-~~--g~V~~iD~~~~~~~~a~~~l~ 118 (205)
T PRK13944 63 MMCELIEPRPGMKILEVGTG------SGYQA--AVCAEAIE-RR--GKVYTVEIVKELAIYAAQNIE 118 (205)
T ss_pred HHHHhcCCCCCCEEEEECcC------ccHHH--HHHHHhcC-CC--CEEEEEeCCHHHHHHHHHHHH
Confidence 35566654445679999963 34433 22332221 22 389999988777777766664
No 72
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=34.88 E-value=4.2e+02 Score=25.49 Aligned_cols=97 Identities=16% Similarity=0.257 Sum_probs=54.6
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc-eEEEeecCCcccc
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN-LEFSVVESNLENL 332 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp-FeF~~V~~~lE~l 332 (514)
.-.|+|+|-| ....++.=+. +. | ..++|+|+.+.+.++.+.++ ++..|++ ++|. ....+++
T Consensus 46 g~~VLDiGcG------tG~~al~la~--~~---~-~~~V~giD~s~~~l~~A~~~----~~~~~l~~i~~~--~~d~~~~ 107 (187)
T PRK00107 46 GERVLDVGSG------AGFPGIPLAI--AR---P-ELKVTLVDSLGKKIAFLREV----AAELGLKNVTVV--HGRAEEF 107 (187)
T ss_pred CCeEEEEcCC------CCHHHHHHHH--HC---C-CCeEEEEeCcHHHHHHHHHH----HHHcCCCCEEEE--eccHhhC
Confidence 3469999964 3344443222 21 3 36999999887766666554 4445664 4443 3334443
Q ss_pred CcccccccCCcEEEEEeccccccccccccchHHHHHHH-HHhcCCcEEEEEe
Q 040125 333 QTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQI-IHELSPKVLVLVE 383 (514)
Q Consensus 333 ~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~-Ir~L~PkVvvlvE 383 (514)
.. ..+-+.++.|+. ...+.+++. .+.|+|.-.+++.
T Consensus 108 ~~----~~~fDlV~~~~~-----------~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 108 GQ----EEKFDVVTSRAV-----------ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred CC----CCCccEEEEccc-----------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 22 123456666542 123456665 4789999666655
No 73
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.28 E-value=34 Score=36.43 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=23.7
Q ss_pred hhHHHHhhhcCCceeEEEeeccccCCCCccchHHH
Q 040125 241 ANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRL 275 (514)
Q Consensus 241 ANqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsL 275 (514)
|-+.+++. |.+||=|||||+.+| .|+|+.--
T Consensus 144 aa~~l~~~--~~~RVaIiD~DvHHG--nGTqeify 174 (340)
T COG0123 144 AAKYLLKK--GVKRVAIIDFDVHHG--NGTQEIFY 174 (340)
T ss_pred HHHHHHHc--CCCcEEEEEecCCCC--hhhHHHHc
Confidence 34444454 889999999999975 99998743
No 74
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=33.10 E-value=4e+02 Score=24.70 Aligned_cols=49 Identities=14% Similarity=0.243 Sum_probs=31.7
Q ss_pred EEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEE
Q 040125 256 HVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEF 322 (514)
Q Consensus 256 HIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF 322 (514)
.|+|+|.|. | .+...++.+ ++ ++|+|+.+.+.++.+.+++. ..++..+|
T Consensus 22 ~vLdlG~G~----G----~~~~~l~~~--~~----~v~~vD~s~~~~~~a~~~~~----~~~~~~~~ 70 (179)
T TIGR00537 22 DVLEIGAGT----G----LVAIRLKGK--GK----CILTTDINPFAVKELRENAK----LNNVGLDV 70 (179)
T ss_pred eEEEeCCCh----h----HHHHHHHhc--CC----EEEEEECCHHHHHHHHHHHH----HcCCceEE
Confidence 499999753 3 244455554 22 89999988877877777764 34454444
No 75
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=32.50 E-value=5.6e+02 Score=26.88 Aligned_cols=113 Identities=13% Similarity=0.119 Sum_probs=54.8
Q ss_pred HHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEE
Q 040125 244 SILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFS 323 (514)
Q Consensus 244 AILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~ 323 (514)
+|++.+...+.-+|+|+|.|. |. ++..++.+ | + -+++||+++...+... +...+++... -...+.
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~----G~----~~~~~~~~--g-~--~~v~GiDpS~~ml~q~-~~~~~~~~~~-~~v~~~ 176 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGS----GY----HMWRMLGH--G-A--KSLVGIDPTVLFLCQF-EAVRKLLDND-KRAILE 176 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCC----cH----HHHHHHHc--C-C--CEEEEEcCCHHHHHHH-HHHHHHhccC-CCeEEE
Confidence 455554433344899999753 32 34445543 2 2 2789999887554332 2222222211 122332
Q ss_pred eecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEe
Q 040125 324 VVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLVE 383 (514)
Q Consensus 324 ~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkVvvlvE 383 (514)
. ..++++.+. ..=++|+ |+..|||+.+ +.+.+-..-+.|+|.-.++++
T Consensus 177 ~--~~ie~lp~~----~~FD~V~--s~gvL~H~~d----p~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 177 P--LGIEQLHEL----YAFDTVF--SMGVLYHRKS----PLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred E--CCHHHCCCC----CCcCEEE--EcchhhccCC----HHHHHHHHHHhcCCCCEEEEE
Confidence 2 234444321 1113333 3445677642 334444444669998555543
No 76
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=32.02 E-value=1.2e+02 Score=30.74 Aligned_cols=75 Identities=20% Similarity=0.187 Sum_probs=48.8
Q ss_pred HHHHHhhhhcc-CCCCCHHH-HHHHHHHHHHHHhHhHhcCCCCcccc-ccchhhHHHHHhcCCceeccCChH-HHHHHHH
Q 040125 404 YSAIFDSLDAM-LPKYDTKR-AKIEQFYFAEEIKNIVSCEGPARVER-HERVDQWRRRMSRAGFQAAPMKMI-NQAQKWL 479 (514)
Q Consensus 404 YsAlFDSLda~-lp~~~~eR-~~iE~~~lg~eI~NiVAcEG~~RvER-hE~~~~Wr~Rm~~AGF~~v~ls~~-~qa~~lL 479 (514)
+-..-+-|... ++-..++| .++|. -.++|.|+|+..+.+..-+ +-+-..=...|+.|||...|+..+ .|++.-|
T Consensus 73 ~eI~~eIl~kGeiQlTaeqR~~m~e~--k~rqIi~~IsRn~IdP~t~~P~Pp~rIe~Ameeakv~id~~K~ae~Qv~evl 150 (234)
T COG1500 73 DEIAEEILKKGEIQLTAEQRREMLEE--KKRQIINIISRNAIDPQTKAPHPPARIEKAMEEAKVHIDPFKSAEEQVQEVL 150 (234)
T ss_pred HHHHHHHHhcCceeccHHHHHHHHHH--HHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcCcccCCCCCHHHHHHHHH
Confidence 33334444432 22233444 45665 4899999999888765544 555567778899999999999854 5666555
Q ss_pred h
Q 040125 480 K 480 (514)
Q Consensus 480 ~ 480 (514)
+
T Consensus 151 K 151 (234)
T COG1500 151 K 151 (234)
T ss_pred H
Confidence 3
No 77
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=31.75 E-value=5.6e+02 Score=26.43 Aligned_cols=101 Identities=16% Similarity=0.256 Sum_probs=58.5
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc-eEEEeecCCcccc
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN-LEFSVVESNLENL 332 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp-FeF~~V~~~lE~l 332 (514)
.-+|+|++-|. |. +--.||.+ + -+++||+.+...++.+.++ |+..|++ .+|.. ...+++
T Consensus 174 ~~~VLDl~cG~----G~----~sl~la~~-~-----~~V~gvD~s~~av~~A~~n----~~~~~l~~v~~~~--~D~~~~ 233 (315)
T PRK03522 174 PRSMWDLFCGV----GG----FGLHCATP-G-----MQLTGIEISAEAIACAKQS----AAELGLTNVQFQA--LDSTQF 233 (315)
T ss_pred CCEEEEccCCC----CH----HHHHHHhc-C-----CEEEEEeCCHHHHHHHHHH----HHHcCCCceEEEE--cCHHHH
Confidence 35799999653 32 23345542 1 3799999888777776555 4455664 55643 223332
Q ss_pred CcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEeec
Q 040125 333 QTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLVEQD 385 (514)
Q Consensus 333 ~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkVvvlvE~e 385 (514)
... . ...-++|++|=. + .+..+.++..+.+++|+.+|.+.-+
T Consensus 234 ~~~-~-~~~~D~Vv~dPP----r-----~G~~~~~~~~l~~~~~~~ivyvsc~ 275 (315)
T PRK03522 234 ATA-Q-GEVPDLVLVNPP----R-----RGIGKELCDYLSQMAPRFILYSSCN 275 (315)
T ss_pred HHh-c-CCCCeEEEECCC----C-----CCccHHHHHHHHHcCCCeEEEEECC
Confidence 111 0 112357777622 0 1223567888899999988877644
No 78
>KOG3820 consensus Aromatic amino acid hydroxylase [Amino acid transport and metabolism]
Probab=30.97 E-value=99 Score=33.79 Aligned_cols=78 Identities=19% Similarity=0.287 Sum_probs=54.0
Q ss_pred EEEeeccc--------cCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCC-----------hhHHHHHHHHHHHHHHhc
Q 040125 256 HVVDLGMT--------LGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLC-----------VEKFQSIGDELKDYAKTY 316 (514)
Q Consensus 256 HIVDf~I~--------~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~-----------~~~l~etg~rL~~fA~~l 316 (514)
-.|.||++ ||.|-=.-.-.|+.+|+..|.-.+=---+|+|..- .+.++++.++|.+||.++
T Consensus 333 FtVEFGLCkq~g~~KayGAGLLSS~gEL~hals~~pei~~FdP~vt~vq~y~it~yQp~YfvaeSFedAk~KlR~fa~ti 412 (461)
T KOG3820|consen 333 FTVEFGLCKQDGELKAYGAGLLSSYGELQHALSDKPEIKDFDPEVTAVQKYLITTYQPLYFVAESFEDAKEKLRKFASTI 412 (461)
T ss_pred EEEEEeeeccCCeeeeechhhhhhHHHHHHHhcCCccccCCCccceeeeeccccccccceeehhhHHHHHHHHHHHHHhC
Confidence 56888875 33222345677899999877544333457887642 468999999999999999
Q ss_pred CCceEE--EeecCCccccC
Q 040125 317 GINLEF--SVVESNLENLQ 333 (514)
Q Consensus 317 gvpFeF--~~V~~~lE~l~ 333 (514)
.=||.. ++...++|-|+
T Consensus 413 ~RPF~VrynpyT~svEvLd 431 (461)
T KOG3820|consen 413 KRPFSVRYNPYTQSVEVLD 431 (461)
T ss_pred CCCceeeeccccceehhhc
Confidence 999875 45555555443
No 79
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=29.53 E-value=4.6e+02 Score=27.98 Aligned_cols=99 Identities=17% Similarity=0.234 Sum_probs=57.5
Q ss_pred EEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCC-ceEEEeecCCccccCc
Q 040125 256 HVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGI-NLEFSVVESNLENLQT 334 (514)
Q Consensus 256 HIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgv-pFeF~~V~~~lE~l~~ 334 (514)
+|+|++-|. ..-+ -.||.+ + -+++||+.+...++.+.+++ +..|+ ..+|.. ...++...
T Consensus 236 ~vLDL~cG~------G~~~--l~la~~-~-----~~v~~vE~~~~av~~a~~N~----~~~~~~~~~~~~--~d~~~~~~ 295 (374)
T TIGR02085 236 QMWDLFCGV------GGFG--LHCAGP-D-----TQLTGIEIESEAIACAQQSA----QMLGLDNLSFAA--LDSAKFAT 295 (374)
T ss_pred EEEEccCCc------cHHH--HHHhhc-C-----CeEEEEECCHHHHHHHHHHH----HHcCCCcEEEEE--CCHHHHHH
Confidence 689998643 2222 334432 1 37999998887777776654 44555 345532 23332211
Q ss_pred ccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEeec
Q 040125 335 KDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLVEQD 385 (514)
Q Consensus 335 ~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkVvvlvE~e 385 (514)
. + ...-++|++|=.. .+....++..|..++|+-+|.++-+
T Consensus 296 ~-~-~~~~D~vi~DPPr---------~G~~~~~l~~l~~~~p~~ivyvsc~ 335 (374)
T TIGR02085 296 A-Q-MSAPELVLVNPPR---------RGIGKELCDYLSQMAPKFILYSSCN 335 (374)
T ss_pred h-c-CCCCCEEEECCCC---------CCCcHHHHHHHHhcCCCeEEEEEeC
Confidence 1 1 1123677777331 1233578888889999988887743
No 80
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=29.34 E-value=91 Score=29.90 Aligned_cols=54 Identities=22% Similarity=0.227 Sum_probs=44.7
Q ss_pred cHHHHHHHHH-HHHhcCCHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHHHHhh
Q 040125 140 RLVQLLIACA-EAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLADRL 193 (514)
Q Consensus 140 ~L~~LLl~CA-eAV~~gd~~~A~~lL~~L~~~as~~Gd~~QRlA~yF~eAL~~Rl 193 (514)
.+..+|+.+. ..+..++...|..++..|..+..|..+-..|+...|.+|+..=.
T Consensus 126 ~i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~ 180 (220)
T TIGR01716 126 RVIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYK 180 (220)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHH
Confidence 3556666666 77888899999999999999887777888999999999996533
No 81
>PTZ00063 histone deacetylase; Provisional
Probab=28.92 E-value=40 Score=37.17 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=22.7
Q ss_pred HHHhhhcCCceeEEEeeccccCCCCccchHH
Q 040125 244 SILEAFEGESFVHVVDLGMTLGLPRGQQWRR 274 (514)
Q Consensus 244 AILEA~~g~~~VHIVDf~I~~G~~~G~QWps 274 (514)
||+++.+..+||=|||||+.+| .|+|+.-
T Consensus 156 Ai~~L~~~~~RVliID~DvHHG--dGtqe~F 184 (436)
T PTZ00063 156 GILELLKYHARVMYIDIDVHHG--DGVEEAF 184 (436)
T ss_pred HHHHHHHhCCeEEEEeCCCCCC--cchHHHh
Confidence 4555566668999999999976 8999863
No 82
>PRK00811 spermidine synthase; Provisional
Probab=28.58 E-value=6.4e+02 Score=25.74 Aligned_cols=109 Identities=13% Similarity=0.062 Sum_probs=54.9
Q ss_pred EEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhc--CCceEEEeecCCccc-c
Q 040125 256 HVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTY--GINLEFSVVESNLEN-L 332 (514)
Q Consensus 256 HIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~l--gvpFeF~~V~~~lE~-l 332 (514)
+|+|+|.|.| .+...+..++ + .-+||+|+.+...++...+.+.++.... +=.+++. ...... +
T Consensus 79 ~VL~iG~G~G--------~~~~~~l~~~---~-~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~--~~Da~~~l 144 (283)
T PRK00811 79 RVLIIGGGDG--------GTLREVLKHP---S-VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELV--IGDGIKFV 144 (283)
T ss_pred EEEEEecCch--------HHHHHHHcCC---C-CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEE--ECchHHHH
Confidence 6788886432 3344444442 2 3599999998877777777666554332 1123332 211111 1
Q ss_pred CcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEee
Q 040125 333 QTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVEQ 384 (514)
Q Consensus 333 ~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE~ 384 (514)
.. .-..=+++++++.-. ...... -....|++.+ +.|+|.-++++-.
T Consensus 145 ~~---~~~~yDvIi~D~~dp--~~~~~~-l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 145 AE---TENSFDVIIVDSTDP--VGPAEG-LFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred hh---CCCcccEEEECCCCC--CCchhh-hhHHHHHHHHHHhcCCCcEEEEeC
Confidence 10 011236777765321 111100 0124566554 7799997777643
No 83
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=27.91 E-value=7.6e+02 Score=26.87 Aligned_cols=109 Identities=20% Similarity=0.271 Sum_probs=59.7
Q ss_pred hhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc-eEEEee
Q 040125 247 EAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN-LEFSVV 325 (514)
Q Consensus 247 EA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp-FeF~~V 325 (514)
+.+.-...-+|+|+|-|- |. +--.||.+. -+++||+.+.+.++.+.+++ +..|+. .+|..
T Consensus 291 ~~l~~~~~~~VLDlgcGt----G~----~sl~la~~~------~~V~gvD~s~~al~~A~~n~----~~~~~~~v~~~~- 351 (443)
T PRK13168 291 EWLDPQPGDRVLDLFCGL----GN----FTLPLARQA------AEVVGVEGVEAMVERARENA----RRNGLDNVTFYH- 351 (443)
T ss_pred HHhcCCCCCEEEEEeccC----CH----HHHHHHHhC------CEEEEEeCCHHHHHHHHHHH----HHcCCCceEEEE-
Confidence 333333446899999753 32 223466542 37999999888887776554 344542 44433
Q ss_pred cCCccc-cCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEeec
Q 040125 326 ESNLEN-LQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLVEQD 385 (514)
Q Consensus 326 ~~~lE~-l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkVvvlvE~e 385 (514)
..+++ +....+.-..-++|++|=.. .....++..+.+++|+-+|.+.-+
T Consensus 352 -~d~~~~l~~~~~~~~~fD~Vi~dPPr----------~g~~~~~~~l~~~~~~~ivyvSCn 401 (443)
T PRK13168 352 -ANLEEDFTDQPWALGGFDKVLLDPPR----------AGAAEVMQALAKLGPKRIVYVSCN 401 (443)
T ss_pred -eChHHhhhhhhhhcCCCCEEEECcCC----------cChHHHHHHHHhcCCCeEEEEEeC
Confidence 22222 11000111112566654322 123467788899999988887644
No 84
>PRK03646 dadX alanine racemase; Reviewed
Probab=27.78 E-value=1.3e+02 Score=31.83 Aligned_cols=53 Identities=13% Similarity=0.132 Sum_probs=32.3
Q ss_pred eeEE-EeeccccCCCCccc---hHHHHHHHhhcCCCCCCcEEEeEecCC---hhHHHHHHHHHHHHHH
Q 040125 254 FVHV-VDLGMTLGLPRGQQ---WRRLIESLANRAGQPPRRLRITAVGLC---VEKFQSIGDELKDYAK 314 (514)
Q Consensus 254 ~VHI-VDf~I~~G~~~G~Q---WpsLiqaLA~R~ggpP~~LRIT~I~~~---~~~l~etg~rL~~fA~ 314 (514)
+||| ||-|++ ..|+. ++.+++.+.. .| .|+++||-.. .+....+.+.+.+|-+
T Consensus 118 ~vhLkvDTGM~---R~G~~~~e~~~~~~~i~~----~~-~l~~~Gi~sH~a~ad~~~~~~~Q~~~F~~ 177 (355)
T PRK03646 118 DIYLKVNSGMN---RLGFQPERVQTVWQQLRA----MG-NVGEMTLMSHFARADHPDGISEAMARIEQ 177 (355)
T ss_pred EEEEEeeCCCC---CCCCCHHHHHHHHHHHHh----CC-CCEEEEEEcCCCCCCCCCHHHHHHHHHHH
Confidence 6898 888875 66775 5566666543 23 6999999643 2222235555555543
No 85
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=27.27 E-value=3.2e+02 Score=27.35 Aligned_cols=57 Identities=23% Similarity=0.343 Sum_probs=35.2
Q ss_pred HhhhHHHHhhh----cCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHH
Q 040125 239 FVANSSILEAF----EGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDEL 309 (514)
Q Consensus 239 ftANqAILEA~----~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL 309 (514)
|..++.+++.+ .-.+.=+|+|+|-|.| .|...|+.+. .++|+|+.+...++...+++
T Consensus 11 fl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G--------~lt~~L~~~~------~~v~~vEid~~~~~~l~~~~ 71 (258)
T PRK14896 11 FLIDDRVVDRIVEYAEDTDGDPVLEIGPGKG--------ALTDELAKRA------KKVYAIELDPRLAEFLRDDE 71 (258)
T ss_pred ccCCHHHHHHHHHhcCCCCcCeEEEEeCccC--------HHHHHHHHhC------CEEEEEECCHHHHHHHHHHh
Confidence 44444444443 3233457999997543 4666677662 27999998876666665554
No 86
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=26.95 E-value=1.7e+02 Score=32.28 Aligned_cols=40 Identities=30% Similarity=0.631 Sum_probs=34.9
Q ss_pred chHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEE
Q 040125 271 QWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFS 323 (514)
Q Consensus 271 QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~ 323 (514)
-|-.+|+.||.+.+.|| .++..-..|.+||+..|+.+-|.
T Consensus 114 SWdaiieyla~~~~~~e-------------d~e~l~~dLv~lard~g~~LIlV 153 (484)
T PF07088_consen 114 SWDAIIEYLAEEHDEPE-------------DIETLTNDLVELARDMGINLILV 153 (484)
T ss_pred cHHHHHHHhhhhhcCcH-------------HHHHHHHHHHHHHhhcCceEEEE
Confidence 69999999999888777 46778889999999999987775
No 87
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=26.84 E-value=3.6e+02 Score=27.09 Aligned_cols=81 Identities=12% Similarity=0.171 Sum_probs=40.8
Q ss_pred cchhHHHHHHHHHhhCCCccchhHhhhHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEe
Q 040125 216 GSREKEEAFRLVYEICPHIQFGHFVANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAV 295 (514)
Q Consensus 216 ~~~~~~~A~~~f~e~sP~~kfahftANqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I 295 (514)
..+++.+|-+.|.+..=|-.+... .++.|.+.+ ..+.-+|+|+|.| .|. +...|+.+-.... ...++||
T Consensus 50 d~~~~~~ar~~fl~~g~y~~l~~~-i~~~l~~~l-~~~~~~vLDiGcG----~G~----~~~~l~~~~~~~~-~~~v~gi 118 (272)
T PRK11088 50 DNKEMMQARRAFLDAGHYQPLRDA-VANLLAERL-DEKATALLDIGCG----EGY----YTHALADALPEIT-TMQLFGL 118 (272)
T ss_pred cCHHHHHHHHHHHHCCChHHHHHH-HHHHHHHhc-CCCCCeEEEECCc----CCH----HHHHHHHhccccc-CCeEEEE
Confidence 445677887777654222111111 112232322 2344679999975 343 2233333211011 2579999
Q ss_pred cCChhHHHHHHH
Q 040125 296 GLCVEKFQSIGD 307 (514)
Q Consensus 296 ~~~~~~l~etg~ 307 (514)
+.+...++.+.+
T Consensus 119 D~s~~~l~~A~~ 130 (272)
T PRK11088 119 DISKVAIKYAAK 130 (272)
T ss_pred CCCHHHHHHHHH
Confidence 988766665543
No 88
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=26.28 E-value=6.5e+02 Score=24.95 Aligned_cols=52 Identities=27% Similarity=0.272 Sum_probs=33.2
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHH
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDE 308 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~r 308 (514)
+.|++++...+.=.|+|+|-|.| .|...|+.+. + ++++|+.+.+.++...++
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G--------~lt~~L~~~~---~---~v~~iE~d~~~~~~l~~~ 70 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLG--------ALTEPLLKRA---K---KVTAIEIDPRLAEILRKL 70 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCC--------HHHHHHHHhC---C---cEEEEECCHHHHHHHHHH
Confidence 34555555455568999996543 4667777663 2 399999877655554443
No 89
>COG4952 Predicted sugar isomerase [Cell envelope biogenesis, outer membrane]
Probab=26.17 E-value=3.4e+02 Score=28.76 Aligned_cols=69 Identities=26% Similarity=0.329 Sum_probs=44.8
Q ss_pred HHHHHHHH---HhcCCcEEEEEeecCC-CCC-CchHHHHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHhHhH
Q 040125 364 LNSVLQII---HELSPKVLVLVEQDSS-HNG-PFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKIEQFYFAEEIKNIV 438 (514)
Q Consensus 364 ~~~~L~~I---r~L~PkVvvlvE~ea~-~ns-p~F~~RF~EAL~yYsAlFDSLda~lp~~~~eR~~iE~~~lg~eI~NiV 438 (514)
++..|..| +.+.-|++++--.|.. ..+ ..|..+|..-+.-..++++.| |. ..|..+|.-+|-|..-..|
T Consensus 158 ieHnlECveIg~~~GSKaltvWvgDGsnfPGQ~nF~r~feRyl~sm~~iY~~l----Pa--Dw~lf~EhKmfEPAFYsTv 231 (430)
T COG4952 158 IEHNLECVEIGKALGSKALTVWVGDGSNFPGQSNFTRAFERYLDSMKAIYAAL----PA--DWRLFTEHKMFEPAFYSTV 231 (430)
T ss_pred HHhhHHHHHHHHhhCcceEEEEeccCCCCCCchhHHHHHHHHHHHHHHHHHhC----ch--hhhHHHhhhcccchhhhcc
Confidence 44456555 8899999988776654 333 367777776666555555554 32 4678888877777665443
No 90
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=25.93 E-value=1.5e+02 Score=32.57 Aligned_cols=62 Identities=15% Similarity=0.185 Sum_probs=45.1
Q ss_pred HHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccCcc
Q 040125 273 RRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQTK 335 (514)
Q Consensus 273 psLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~~~ 335 (514)
|.||+.|..++..-| -=.|+-++-+.+.++.++....++++..|.++++..-.+.-|.|+-.
T Consensus 14 p~li~~l~~~~~~l~-~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gA 75 (437)
T cd05298 14 PGIVKSLLDRKEDFP-LRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDA 75 (437)
T ss_pred HHHHHHHHhCcccCC-CCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCC
Confidence 578899999864333 23455556667788889999999999999999988765544444433
No 91
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=25.43 E-value=38 Score=27.79 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=17.8
Q ss_pred cchhhHHHHHhcCCceeccCC
Q 040125 450 ERVDQWRRRMSRAGFQAAPMK 470 (514)
Q Consensus 450 E~~~~Wr~Rm~~AGF~~v~ls 470 (514)
|+..+-|++|..+|++|+++-
T Consensus 3 ~RV~khR~~lRa~GLRPVqiW 23 (65)
T PF11455_consen 3 ERVRKHRERLRAAGLRPVQIW 23 (65)
T ss_pred HHHHHHHHHHHHcCCCcceee
Confidence 456677899999999999994
No 92
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=25.19 E-value=6.1e+02 Score=24.28 Aligned_cols=111 Identities=13% Similarity=0.124 Sum_probs=55.9
Q ss_pred ceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCC-ceEEEeecCCc-c
Q 040125 253 SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGI-NLEFSVVESNL-E 330 (514)
Q Consensus 253 ~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgv-pFeF~~V~~~l-E 330 (514)
+.-.|+|+|-|. |.- ...|+.+. | .-++|||+.+.+.++.+.+++.. .++ +++| +...+ +
T Consensus 40 ~~~~VLDiGcGt----G~~----~~~la~~~---p-~~~v~gVD~s~~~i~~a~~~~~~----~~~~~v~~--~~~d~~~ 101 (202)
T PRK00121 40 DAPIHLEIGFGK----GEF----LVEMAKAN---P-DINFIGIEVHEPGVGKALKKIEE----EGLTNLRL--LCGDAVE 101 (202)
T ss_pred CCCeEEEEccCC----CHH----HHHHHHHC---C-CccEEEEEechHHHHHHHHHHHH----cCCCCEEE--EecCHHH
Confidence 446799999753 332 23344432 3 36899999988777777666543 243 2444 32333 3
Q ss_pred ccCcccccccCCcEEEEEecccccccccccc-chHHHHHHHH-HhcCCcEEEEE
Q 040125 331 NLQTKDIKVLENEVLVVNSILQLHCVVKESR-GALNSVLQII-HELSPKVLVLV 382 (514)
Q Consensus 331 ~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~-~~~~~~L~~I-r~L~PkVvvlv 382 (514)
.+.. .+.-..=+.+++|.....+....... .....+|+.+ +-|+|.-+++.
T Consensus 102 ~l~~-~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i 154 (202)
T PRK00121 102 VLLD-MFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHF 154 (202)
T ss_pred HHHH-HcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEE
Confidence 3320 01111124566665443222111100 1124677776 57999754443
No 93
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=24.73 E-value=28 Score=28.86 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=16.7
Q ss_pred cEEEeEecCChhHHHHHHHHHHH
Q 040125 289 RLRITAVGLCVEKFQSIGDELKD 311 (514)
Q Consensus 289 ~LRIT~I~~~~~~l~etg~rL~~ 311 (514)
..++|+++.+...++...+++.+
T Consensus 20 ~~~~~~~D~s~~~l~~a~~~~~~ 42 (99)
T PF08242_consen 20 DARYTGVDISPSMLERARERLAE 42 (99)
T ss_dssp EEEEEEEESSSSTTSTTCCCHHH
T ss_pred CCEEEEEECCHHHHHHHHHHhhh
Confidence 69999999887766555555443
No 94
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=24.33 E-value=2.3e+02 Score=26.42 Aligned_cols=116 Identities=24% Similarity=0.307 Sum_probs=61.8
Q ss_pred hhHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCce
Q 040125 241 ANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINL 320 (514)
Q Consensus 241 ANqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpF 320 (514)
+-..+++.+...+.=+|+|+|.|.| -.++ .|+.+. | ..++|+++.+...++.+.+. ++..++.-
T Consensus 19 ~t~lL~~~l~~~~~~~vLDlG~G~G------~i~~--~la~~~---~-~~~v~~vDi~~~a~~~a~~n----~~~n~~~~ 82 (170)
T PF05175_consen 19 GTRLLLDNLPKHKGGRVLDLGCGSG------VISL--ALAKRG---P-DAKVTAVDINPDALELAKRN----AERNGLEN 82 (170)
T ss_dssp HHHHHHHHHHHHTTCEEEEETSTTS------HHHH--HHHHTS---T-CEEEEEEESBHHHHHHHHHH----HHHTTCTT
T ss_pred HHHHHHHHHhhccCCeEEEecCChH------HHHH--HHHHhC---C-CCEEEEEcCCHHHHHHHHHH----HHhcCccc
Confidence 4456666666556667999997543 2222 344432 3 58999999887777666555 44556652
Q ss_pred EEEeecCC-ccccCcccccccCCcEEEEEeccccccccccccchHHHHH-HHHHhcCCcEEE
Q 040125 321 EFSVVESN-LENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVL-QIIHELSPKVLV 380 (514)
Q Consensus 321 eF~~V~~~-lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L-~~Ir~L~PkVvv 380 (514)
.+.+... ++.+. -..=+.++.|=.+ |.-.++.......|+ ..-+-|+|.-..
T Consensus 83 -v~~~~~d~~~~~~-----~~~fD~Iv~NPP~--~~~~~~~~~~~~~~i~~a~~~Lk~~G~l 136 (170)
T PF05175_consen 83 -VEVVQSDLFEALP-----DGKFDLIVSNPPF--HAGGDDGLDLLRDFIEQARRYLKPGGRL 136 (170)
T ss_dssp -EEEEESSTTTTCC-----TTCEEEEEE---S--BTTSHCHHHHHHHHHHHHHHHEEEEEEE
T ss_pred -ccccccccccccc-----ccceeEEEEccch--hcccccchhhHHHHHHHHHHhccCCCEE
Confidence 3333322 22222 1122577777663 433322222334444 444679998544
No 95
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=23.60 E-value=6.4e+02 Score=23.92 Aligned_cols=100 Identities=21% Similarity=0.279 Sum_probs=50.8
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCC-ceEEEeecCCcccc
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGI-NLEFSVVESNLENL 332 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgv-pFeF~~V~~~lE~l 332 (514)
...|+|+|-+. |. +...++.. + .++|+|+.+...++...+++. ..++ ++.|.. ...+++
T Consensus 46 ~~~vLdlG~G~----G~----~~~~l~~~-~-----~~v~~iD~s~~~~~~a~~~~~----~~~~~~~~~~~--~d~~~~ 105 (224)
T TIGR01983 46 GLRVLDVGCGG----GL----LSEPLARL-G-----ANVTGIDASEENIEVAKLHAK----KDPLLKIEYRC--TSVEDL 105 (224)
T ss_pred CCeEEEECCCC----CH----HHHHHHhc-C-----CeEEEEeCCHHHHHHHHHHHH----HcCCCceEEEe--CCHHHh
Confidence 56899999642 31 33344442 2 249999988766666665544 2344 344432 222222
Q ss_pred CcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 040125 333 QTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLV 382 (514)
Q Consensus 333 ~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlv 382 (514)
.... ...-+.|+.+ ..||+..+ ...+|+.+ +.|+|.-++++
T Consensus 106 ~~~~--~~~~D~i~~~--~~l~~~~~-----~~~~l~~~~~~L~~gG~l~i 147 (224)
T TIGR01983 106 AEKG--AKSFDVVTCM--EVLEHVPD-----PQAFIRACAQLLKPGGILFF 147 (224)
T ss_pred hcCC--CCCccEEEeh--hHHHhCCC-----HHHHHHHHHHhcCCCcEEEE
Confidence 1111 1123444443 34466532 24565555 56788855544
No 96
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=22.30 E-value=1.9e+02 Score=31.76 Aligned_cols=61 Identities=16% Similarity=0.248 Sum_probs=45.4
Q ss_pred h-HHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccC
Q 040125 272 W-RRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQ 333 (514)
Q Consensus 272 W-psLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~ 333 (514)
| |.||+.|..++..-| --.|+-++-+.++++.++....+.++..|.+++|..-.+.-+.|+
T Consensus 12 ~tp~li~~l~~~~~~l~-~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~ 73 (425)
T cd05197 12 FTPELVSGLLKTPEELP-ISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAII 73 (425)
T ss_pred hHHHHHHHHHcChhhCC-CCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhC
Confidence 6 478899999985444 356666666677888899999999999999998887654333333
No 97
>PTZ00346 histone deacetylase; Provisional
Probab=22.04 E-value=63 Score=35.56 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=20.3
Q ss_pred HhhhcCCceeEEEeeccccCCCCccchH
Q 040125 246 LEAFEGESFVHVVDLGMTLGLPRGQQWR 273 (514)
Q Consensus 246 LEA~~g~~~VHIVDf~I~~G~~~G~QWp 273 (514)
+.+.+..+||=|||||+.+| .|+|..
T Consensus 175 ~~ll~~~~RVliID~DVHHG--nGTqei 200 (429)
T PTZ00346 175 LELLKCHDRVLYVDIDMHHG--DGVDEA 200 (429)
T ss_pred HHHHHcCCeEEEEeCCCCCC--chHHHH
Confidence 34445567999999999975 899965
No 98
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=21.87 E-value=93 Score=31.89 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=18.4
Q ss_pred cCCceeEEEeeccccCCCCccchHHHHHHHhhcC
Q 040125 250 EGESFVHVVDLGMTLGLPRGQQWRRLIESLANRA 283 (514)
Q Consensus 250 ~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ 283 (514)
.|.+.|||||+| .+ +. .+|..++.-.
T Consensus 50 ~Ga~~lHvVDLg------~~-n~-~~i~~i~~~~ 75 (253)
T TIGR02129 50 DGVKGCHVIMLG------PN-ND-DAAKEALHAY 75 (253)
T ss_pred cCCCEEEEEECC------CC-cH-HHHHHHHHhC
Confidence 489999999995 24 66 5666666543
No 99
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=21.19 E-value=6e+02 Score=22.74 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=16.0
Q ss_pred hHHHHHHHHHhcCCcEEEEEe
Q 040125 363 ALNSVLQIIHELSPKVLVLVE 383 (514)
Q Consensus 363 ~~~~~L~~Ir~L~PkVvvlvE 383 (514)
.+..+++.+|+-+++|+++.-
T Consensus 89 ~l~~li~~~~~~~~~vil~~~ 109 (177)
T cd01822 89 NLRQMIETAQARGAPVLLVGM 109 (177)
T ss_pred HHHHHHHHHHHCCCeEEEEec
Confidence 356788888888888887753
No 100
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=21.00 E-value=52 Score=35.50 Aligned_cols=13 Identities=31% Similarity=0.902 Sum_probs=10.8
Q ss_pred cCCceeEEEeecc
Q 040125 250 EGESFVHVVDLGM 262 (514)
Q Consensus 250 ~g~~~VHIVDf~I 262 (514)
..+..|||||||+
T Consensus 163 k~~n~IhiiDFGm 175 (449)
T KOG1165|consen 163 KDANVIHIIDFGM 175 (449)
T ss_pred CCCceEEEEeccc
Confidence 4567899999997
No 101
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=20.95 E-value=3.5e+02 Score=25.34 Aligned_cols=46 Identities=22% Similarity=0.324 Sum_probs=28.4
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHH
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKD 311 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~ 311 (514)
.-.|+|+|-|. | .+.-.++.+ + | ..++|+|+.+...++.+.++..+
T Consensus 32 ~~~vLDiG~G~----G----~~~~~la~~--~-~-~~~v~~vD~s~~~~~~a~~n~~~ 77 (187)
T PRK08287 32 AKHLIDVGAGT----G----SVSIEAALQ--F-P-SLQVTAIERNPDALRLIKENRQR 77 (187)
T ss_pred CCEEEEECCcC----C----HHHHHHHHH--C-C-CCEEEEEECCHHHHHHHHHHHHH
Confidence 34799999643 2 222334443 2 3 47999999987777766555433
No 102
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=20.81 E-value=2.7e+02 Score=28.66 Aligned_cols=47 Identities=23% Similarity=0.400 Sum_probs=31.6
Q ss_pred EEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCC
Q 040125 256 HVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGI 318 (514)
Q Consensus 256 HIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgv 318 (514)
||+|+|.| .|..=. +|+.+ + | ..+|+|++-+.+.++-+.++ |+..|+
T Consensus 113 ~ilDlGTG----SG~iai----~la~~--~-~-~~~V~a~Dis~~Al~~A~~N----a~~~~l 159 (280)
T COG2890 113 RILDLGTG----SGAIAI----ALAKE--G-P-DAEVIAVDISPDALALAREN----AERNGL 159 (280)
T ss_pred cEEEecCC----hHHHHH----HHHhh--C-c-CCeEEEEECCHHHHHHHHHH----HHHcCC
Confidence 99999975 343222 23322 2 3 48999999998888888776 556665
No 103
>PRK07402 precorrin-6B methylase; Provisional
Probab=20.76 E-value=3.5e+02 Score=25.58 Aligned_cols=64 Identities=14% Similarity=0.071 Sum_probs=38.4
Q ss_pred chhHhhhHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHH
Q 040125 236 FGHFVANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKD 311 (514)
Q Consensus 236 fahftANqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~ 311 (514)
...--..+.+++.+.-...=.|+|+|-|.| . +. ..++... | .-++|+|+.+.+.++.+.+++.+
T Consensus 23 ~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G----~-~~---~~la~~~---~-~~~V~~vD~s~~~~~~a~~n~~~ 86 (196)
T PRK07402 23 LTKREVRLLLISQLRLEPDSVLWDIGAGTG----T-IP---VEAGLLC---P-KGRVIAIERDEEVVNLIRRNCDR 86 (196)
T ss_pred CCHHHHHHHHHHhcCCCCCCEEEEeCCCCC----H-HH---HHHHHHC---C-CCEEEEEeCCHHHHHHHHHHHHH
Confidence 334445556666665444457999997543 2 22 2233321 2 26999999988777777666644
No 104
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=20.55 E-value=5.2e+02 Score=26.77 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=32.3
Q ss_pred HHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHH
Q 040125 245 ILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKD 311 (514)
Q Consensus 245 ILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~ 311 (514)
|+++..-...=.|+|+|-|. -.|-..|+.+. -++++|+.+.+.++.+.+++..
T Consensus 28 Iv~~~~~~~~~~VLEIG~G~--------G~LT~~Ll~~~------~~V~avEiD~~li~~l~~~~~~ 80 (294)
T PTZ00338 28 IVEKAAIKPTDTVLEIGPGT--------GNLTEKLLQLA------KKVIAIEIDPRMVAELKKRFQN 80 (294)
T ss_pred HHHhcCCCCcCEEEEecCch--------HHHHHHHHHhC------CcEEEEECCHHHHHHHHHHHHh
Confidence 33333333334699998643 34556666642 2699999887766666665543
No 105
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=20.26 E-value=2.9e+02 Score=30.69 Aligned_cols=80 Identities=16% Similarity=0.162 Sum_probs=47.9
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccch-HHH-HHHHhhcC-CCCCCcEEE----eEecCC--hhHHHHHHHHHHHHH
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQW-RRL-IESLANRA-GQPPRRLRI----TAVGLC--VEKFQSIGDELKDYA 313 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QW-psL-iqaLA~R~-ggpP~~LRI----T~I~~~--~~~l~etg~rL~~fA 313 (514)
.+|-+......+-+||=|+.|- -..= -.| .++|...| .++.+.+.| |++..| ...++.+-+++.++|
T Consensus 3 ~~i~~~y~~~~~p~vV~fSGGK----DSta~L~Lv~~Al~~lp~e~~~k~v~VI~~DTgvE~Pe~~~~v~~~l~~i~~~a 78 (447)
T TIGR03183 3 EEIQELYLSDDIPWVVGYSGGK----DSTAVLQLIWNALAALPAEQRTKKIHVISTDTLVENPIVAAWVNASLERMQEAA 78 (447)
T ss_pred HHHHHHHHhcCCceEEEeCCCH----HHHHHHHHHHHHHHhccccccCcceEEEECcCCCccHHHHHHHHHHHHHHHHHH
Confidence 4566666666677888887531 1110 111 13443322 222224676 555554 346678888999999
Q ss_pred HhcCCceEEEeec
Q 040125 314 KTYGINLEFSVVE 326 (514)
Q Consensus 314 ~~lgvpFeF~~V~ 326 (514)
+..|+|+..+.+.
T Consensus 79 ~~~~lpi~~~~v~ 91 (447)
T TIGR03183 79 QDQGLPIEPHRLT 91 (447)
T ss_pred HHcCCCeEEEecC
Confidence 9999999988764
No 106
>PF00367 PTS_EIIB: phosphotransferase system, EIIB; InterPro: IPR018113 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to enzyme-I (EI) of PTS which in turn transfers it to a phosphoryl carrier protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease which consists of at least three structurally distinct domains (IIA, IIB, and IIC) [] which can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA) carries the first permease-specific phoshorylation site, a histidine, which is phosphorylated by phospho-HPr. The second domain (IIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the permease. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate in a process catalyzed by the IIC domain; this process is coupled to the transmembrane transport of the sugar. This entry covers the phosphorylation site of EIIB domains. ; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity; PDB: 3IPJ_B 3BP3_A 1O2F_B 3BP8_C 1IBA_A.
Probab=20.09 E-value=1.6e+02 Score=21.00 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=17.3
Q ss_pred HHHHhhhcCCceeEEEeeccc
Q 040125 243 SSILEAFEGESFVHVVDLGMT 263 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~ 263 (514)
+.|++++.|.+.|.=|+--++
T Consensus 2 ~~il~~lGG~~NI~~v~~C~T 22 (35)
T PF00367_consen 2 KQILEALGGKENIKSVTNCAT 22 (35)
T ss_dssp HHHHHHCTTCCCEEEEEE-SS
T ss_pred hHHHHHhCCHHHHHHHhcCcc
Confidence 579999999999998888763
Done!