Query 040125
Match_columns 514
No_of_seqs 159 out of 693
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 08:08:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040125.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040125hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gek_A TRNA (CMO5U34)-methyltr 97.4 0.0037 1.3E-07 61.3 15.9 108 254-385 71-180 (261)
2 3dtn_A Putative methyltransfer 96.3 0.029 9.8E-07 52.4 11.5 176 243-469 33-211 (234)
3 3dp7_A SAM-dependent methyltra 95.3 0.54 1.8E-05 47.6 16.7 117 244-386 170-290 (363)
4 3dh0_A SAM dependent methyltra 95.0 1.2 4.1E-05 40.6 16.7 113 243-382 27-141 (219)
5 3bkx_A SAM-dependent methyltra 94.9 0.88 3E-05 43.2 16.3 122 244-391 34-167 (275)
6 1vl5_A Unknown conserved prote 94.7 0.79 2.7E-05 43.3 15.2 109 244-382 28-138 (260)
7 4a6d_A Hydroxyindole O-methylt 94.2 0.75 2.6E-05 46.5 14.6 161 241-469 167-331 (353)
8 3ujc_A Phosphoethanolamine N-m 94.2 0.49 1.7E-05 44.4 12.3 125 232-384 34-160 (266)
9 1xxl_A YCGJ protein; structura 93.9 3.1 0.00011 38.8 17.4 113 243-385 11-126 (239)
10 2aot_A HMT, histamine N-methyl 93.9 1.3 4.4E-05 43.0 15.0 117 252-381 51-169 (292)
11 2r3s_A Uncharacterized protein 93.8 2.1 7.2E-05 42.0 16.7 116 243-386 153-274 (335)
12 1x19_A CRTF-related protein; m 93.8 1.1 3.8E-05 44.9 15.0 117 241-386 178-298 (359)
13 3mcz_A O-methyltransferase; ad 93.8 2.1 7.1E-05 42.5 16.8 116 244-385 169-289 (352)
14 2ip2_A Probable phenazine-spec 93.3 1.1 3.9E-05 44.1 13.8 116 242-385 157-274 (334)
15 3gwz_A MMCR; methyltransferase 92.9 2.3 7.9E-05 43.0 15.7 116 242-386 191-310 (369)
16 3htx_A HEN1; HEN1, small RNA m 92.9 0.62 2.1E-05 53.4 12.3 125 243-387 711-838 (950)
17 3vc1_A Geranyl diphosphate 2-C 92.9 1.6 5.4E-05 42.8 14.0 109 243-381 106-218 (312)
18 3f4k_A Putative methyltransfer 92.8 4 0.00014 38.1 16.2 128 227-384 19-151 (257)
19 3reo_A (ISO)eugenol O-methyltr 92.8 1.5 5E-05 44.6 14.0 109 242-385 191-302 (368)
20 3i53_A O-methyltransferase; CO 92.5 1.9 6.6E-05 42.6 14.2 112 245-385 161-276 (332)
21 3sm3_A SAM-dependent methyltra 92.0 1.8 6.2E-05 39.5 12.4 106 254-386 31-144 (235)
22 3mgg_A Methyltransferase; NYSG 91.9 2.4 8.4E-05 40.2 13.6 105 253-385 37-144 (276)
23 3bus_A REBM, methyltransferase 91.4 5.4 0.00018 37.6 15.4 113 243-384 51-167 (273)
24 3lcv_B Sisomicin-gentamicin re 91.4 2.3 7.7E-05 42.6 12.9 133 244-412 125-259 (281)
25 3p9c_A Caffeic acid O-methyltr 91.1 1.7 5.8E-05 44.1 12.2 108 243-385 190-300 (364)
26 3lst_A CALO1 methyltransferase 90.9 2.5 8.5E-05 42.3 13.1 111 242-384 173-287 (348)
27 1qzz_A RDMB, aclacinomycin-10- 90.9 4.4 0.00015 40.4 14.9 113 243-384 172-288 (374)
28 1tw3_A COMT, carminomycin 4-O- 90.9 3.6 0.00012 40.9 14.1 114 243-385 173-290 (360)
29 4fsd_A Arsenic methyltransfera 90.7 3.7 0.00013 41.7 14.3 113 253-385 83-205 (383)
30 3jwh_A HEN1; methyltransferase 90.5 3.5 0.00012 37.7 12.7 115 245-385 21-142 (217)
31 3hem_A Cyclopropane-fatty-acyl 90.2 2.3 7.7E-05 41.3 11.7 112 244-382 63-181 (302)
32 1xtp_A LMAJ004091AAA; SGPP, st 90.1 1.9 6.6E-05 40.1 10.7 113 243-383 83-196 (254)
33 3h2b_A SAM-dependent methyltra 89.6 2.1 7.3E-05 38.5 10.3 97 254-382 42-139 (203)
34 3dlc_A Putative S-adenosyl-L-m 88.8 4.3 0.00015 36.4 11.8 113 241-383 32-147 (219)
35 3e23_A Uncharacterized protein 88.2 5.3 0.00018 36.2 12.0 96 254-383 44-140 (211)
36 3lcc_A Putative methyl chlorid 87.8 10 0.00035 34.9 13.9 101 255-382 68-169 (235)
37 3jwg_A HEN1, methyltransferase 87.8 4.7 0.00016 36.8 11.4 119 243-387 19-144 (219)
38 3l8d_A Methyltransferase; stru 87.7 9.6 0.00033 35.0 13.7 98 254-383 54-152 (242)
39 3gu3_A Methyltransferase; alph 86.7 23 0.00077 33.9 16.9 106 252-385 21-128 (284)
40 1kpg_A CFA synthase;, cyclopro 86.7 7.1 0.00024 37.2 12.5 111 244-384 55-169 (287)
41 2qe6_A Uncharacterized protein 86.5 24 0.00083 34.0 16.9 140 225-386 45-199 (274)
42 3m70_A Tellurite resistance pr 86.2 9.7 0.00033 36.3 13.1 111 243-382 110-221 (286)
43 3fzg_A 16S rRNA methylase; met 85.2 2.9 0.0001 39.9 8.6 101 256-384 52-152 (200)
44 3ccf_A Cyclopropane-fatty-acyl 84.7 12 0.00041 35.6 12.9 106 243-383 47-153 (279)
45 3hnr_A Probable methyltransfer 83.8 3.9 0.00013 37.1 8.7 109 242-382 34-143 (220)
46 4dcm_A Ribosomal RNA large sub 83.8 8.1 0.00028 39.5 11.9 124 240-383 209-333 (375)
47 3kkz_A Uncharacterized protein 83.6 18 0.00061 34.0 13.5 128 227-384 19-151 (267)
48 3mq2_A 16S rRNA methyltransfer 83.1 3.4 0.00012 37.8 8.0 116 245-383 19-139 (218)
49 3ocj_A Putative exported prote 82.8 20 0.00068 34.7 13.9 105 253-382 118-225 (305)
50 3g5l_A Putative S-adenosylmeth 82.6 14 0.00047 34.4 12.2 111 242-383 33-144 (253)
51 3dli_A Methyltransferase; PSI- 82.2 3.1 0.00011 38.7 7.5 94 254-382 42-138 (240)
52 2o57_A Putative sarcosine dime 81.9 8.7 0.0003 36.7 10.8 115 243-386 68-190 (297)
53 1fp1_D Isoliquiritigenin 2'-O- 81.8 7.2 0.00025 39.2 10.5 107 243-384 198-307 (372)
54 1nkv_A Hypothetical protein YJ 80.8 16 0.00056 33.7 12.0 114 241-384 24-141 (256)
55 2fk8_A Methoxy mycolic acid sy 80.8 11 0.00039 36.4 11.3 112 244-385 81-196 (318)
56 3frh_A 16S rRNA methylase; met 80.7 11 0.00038 37.1 10.9 101 254-384 106-206 (253)
57 3bgv_A MRNA CAP guanine-N7 met 79.1 18 0.00061 35.1 12.1 114 253-382 34-153 (313)
58 2xvm_A Tellurite resistance pr 78.9 33 0.0011 30.1 13.6 113 242-383 21-136 (199)
59 3ofk_A Nodulation protein S; N 78.5 27 0.00091 31.4 12.3 111 244-383 42-153 (216)
60 3uwp_A Histone-lysine N-methyl 77.5 9.7 0.00033 40.3 10.0 120 243-382 163-286 (438)
61 4htf_A S-adenosylmethionine-de 77.4 22 0.00074 33.8 11.9 109 245-383 61-172 (285)
62 3thr_A Glycine N-methyltransfe 77.4 6.5 0.00022 37.5 8.1 123 243-383 47-174 (293)
63 3p9n_A Possible methyltransfer 77.3 15 0.00051 32.7 10.1 110 254-389 45-158 (189)
64 3giw_A Protein of unknown func 76.9 28 0.00094 34.6 12.7 148 221-385 42-202 (277)
65 2p7i_A Hypothetical protein; p 76.4 13 0.00043 33.9 9.5 105 244-382 32-139 (250)
66 3u81_A Catechol O-methyltransf 75.3 29 0.001 31.7 11.8 109 254-385 59-171 (221)
67 2yqz_A Hypothetical protein TT 75.1 31 0.0011 31.8 12.0 102 252-383 38-140 (263)
68 3ou2_A SAM-dependent methyltra 75.1 32 0.0011 30.6 11.8 111 242-385 34-148 (218)
69 1ve3_A Hypothetical protein PH 73.0 37 0.0013 30.5 11.7 101 254-382 39-140 (227)
70 3cgg_A SAM-dependent methyltra 72.9 34 0.0012 29.6 11.1 107 243-383 37-146 (195)
71 3r0q_C Probable protein argini 71.3 30 0.001 35.1 11.7 114 243-384 53-169 (376)
72 3g2m_A PCZA361.24; SAM-depende 70.6 13 0.00043 35.8 8.4 117 241-383 71-189 (299)
73 3g5t_A Trans-aconitate 3-methy 70.2 32 0.0011 32.9 11.2 111 252-382 35-147 (299)
74 1dus_A MJ0882; hypothetical pr 70.1 47 0.0016 28.6 11.4 114 241-384 40-157 (194)
75 2pjd_A Ribosomal RNA small sub 69.5 14 0.00047 36.8 8.6 118 241-383 184-302 (343)
76 2ex4_A Adrenal gland protein A 69.3 50 0.0017 30.3 11.9 119 241-385 62-187 (241)
77 3i9f_A Putative type 11 methyl 69.2 27 0.00093 30.0 9.5 102 244-382 8-110 (170)
78 2y1w_A Histone-arginine methyl 68.4 15 0.00051 36.8 8.6 114 242-383 39-154 (348)
79 1wzn_A SAM-dependent methyltra 68.1 63 0.0021 29.6 12.4 111 245-384 33-145 (252)
80 1ri5_A MRNA capping enzyme; me 67.8 42 0.0014 31.5 11.3 109 253-383 64-173 (298)
81 2yxd_A Probable cobalt-precorr 67.5 27 0.00092 30.0 9.1 103 244-382 26-129 (183)
82 3bkw_A MLL3908 protein, S-aden 66.9 52 0.0018 29.8 11.4 110 242-382 32-142 (243)
83 1y8c_A S-adenosylmethionine-de 66.3 75 0.0026 28.6 12.7 113 243-383 25-141 (246)
84 3p2e_A 16S rRNA methylase; met 66.0 14 0.00048 34.6 7.4 112 253-382 24-137 (225)
85 1fp2_A Isoflavone O-methyltran 65.2 41 0.0014 33.3 11.0 98 253-385 188-290 (352)
86 3dxy_A TRNA (guanine-N(7)-)-me 64.0 32 0.0011 32.0 9.4 113 253-385 34-151 (218)
87 1zg3_A Isoflavanone 4'-O-methy 63.1 80 0.0027 31.2 12.8 107 244-385 182-295 (358)
88 3pfg_A N-methyltransferase; N, 62.8 25 0.00085 32.8 8.5 98 254-383 51-150 (263)
89 1vlm_A SAM-dependent methyltra 62.2 80 0.0027 28.5 11.7 22 449-470 165-186 (219)
90 1yzh_A TRNA (guanine-N(7)-)-me 61.7 66 0.0023 29.0 11.0 114 253-385 41-157 (214)
91 2vdw_A Vaccinia virus capping 60.0 51 0.0017 32.3 10.5 107 254-382 49-167 (302)
92 3njr_A Precorrin-6Y methylase; 59.0 1E+02 0.0035 27.9 11.8 64 243-324 45-110 (204)
93 3iv6_A Putative Zn-dependent a 58.8 27 0.00091 34.0 8.1 53 243-309 35-87 (261)
94 2zfu_A Nucleomethylin, cerebra 58.3 44 0.0015 30.0 9.1 19 451-469 158-176 (215)
95 3e8s_A Putative SAM dependent 57.8 50 0.0017 29.4 9.3 55 240-308 39-93 (227)
96 3b3j_A Histone-arginine methyl 57.7 15 0.00051 38.9 6.5 114 243-384 148-263 (480)
97 3ege_A Putative methyltransfer 57.2 30 0.001 32.5 8.0 112 243-390 24-137 (261)
98 3q7e_A Protein arginine N-meth 56.2 57 0.0019 32.5 10.3 104 254-384 67-173 (349)
99 3fut_A Dimethyladenosine trans 56.1 35 0.0012 33.3 8.5 101 228-353 17-122 (271)
100 3eey_A Putative rRNA methylase 55.8 1.1E+02 0.0036 26.9 11.6 108 255-382 24-137 (197)
101 1pjz_A Thiopurine S-methyltran 55.7 89 0.0031 28.1 10.8 42 253-308 22-63 (203)
102 2esr_A Methyltransferase; stru 55.5 55 0.0019 28.3 9.0 106 254-388 32-142 (177)
103 3lbf_A Protein-L-isoaspartate 53.9 1.1E+02 0.0038 27.1 11.0 105 243-382 67-172 (210)
104 4e2x_A TCAB9; kijanose, tetron 53.5 16 0.00056 37.0 5.8 109 244-383 98-207 (416)
105 3cc8_A Putative methyltransfer 52.9 59 0.002 28.9 9.0 106 242-382 22-128 (230)
106 2fpo_A Methylase YHHF; structu 52.9 53 0.0018 29.6 8.7 102 255-385 56-161 (202)
107 2gs9_A Hypothetical protein TT 52.9 64 0.0022 28.7 9.2 103 245-384 29-133 (211)
108 2pxx_A Uncharacterized protein 52.8 77 0.0026 27.9 9.7 45 253-310 42-86 (215)
109 2fyt_A Protein arginine N-meth 52.2 88 0.003 31.0 10.9 111 243-381 54-168 (340)
110 2p35_A Trans-aconitate 2-methy 52.1 72 0.0025 29.2 9.6 106 244-382 24-130 (259)
111 3e05_A Precorrin-6Y C5,15-meth 51.0 1.3E+02 0.0045 26.6 12.5 109 243-383 30-141 (204)
112 1nv8_A HEMK protein; class I a 50.8 76 0.0026 30.7 10.0 53 255-324 125-179 (284)
113 1uwv_A 23S rRNA (uracil-5-)-me 50.4 1.2E+02 0.0039 31.3 11.8 109 245-383 278-388 (433)
114 3g07_A 7SK snRNA methylphospha 49.3 41 0.0014 32.4 7.7 48 253-312 46-93 (292)
115 4azs_A Methyltransferase WBDD; 49.2 43 0.0015 35.9 8.5 106 253-382 66-173 (569)
116 2qn6_B Translation initiation 49.2 23 0.0008 29.5 5.0 38 285-323 50-91 (93)
117 3dmg_A Probable ribosomal RNA 48.3 1.7E+02 0.0058 29.7 12.5 119 241-384 215-340 (381)
118 1g6q_1 HnRNP arginine N-methyl 48.1 1.2E+02 0.004 29.8 11.0 112 244-382 29-143 (328)
119 3hm2_A Precorrin-6Y C5,15-meth 48.1 52 0.0018 28.2 7.5 61 243-319 15-75 (178)
120 2ift_A Putative methylase HI07 47.9 90 0.0031 28.1 9.4 106 255-388 55-167 (201)
121 3mti_A RRNA methylase; SAM-dep 47.4 1.4E+02 0.0048 25.8 12.0 43 255-311 24-66 (185)
122 1zq9_A Probable dimethyladenos 47.2 65 0.0022 31.2 8.8 85 243-352 18-104 (285)
123 3d2l_A SAM-dependent methyltra 46.5 1.6E+02 0.0056 26.4 12.7 108 245-383 27-136 (243)
124 2g72_A Phenylethanolamine N-me 46.2 1.1E+02 0.0037 29.0 10.1 45 253-310 71-115 (289)
125 2jjq_A Uncharacterized RNA met 45.5 2E+02 0.007 29.6 12.8 95 255-383 292-386 (425)
126 2p8j_A S-adenosylmethionine-de 44.9 1.6E+02 0.0055 25.8 10.9 103 254-383 24-127 (209)
127 1ws6_A Methyltransferase; stru 44.8 60 0.002 27.5 7.3 104 254-387 42-150 (171)
128 1wy7_A Hypothetical protein PH 44.4 1.7E+02 0.0057 25.8 11.7 93 253-375 49-141 (207)
129 1xj5_A Spermidine synthase 1; 43.3 1.2E+02 0.0042 30.2 10.4 135 254-409 121-257 (334)
130 3gru_A Dimethyladenosine trans 43.0 1.1E+02 0.0038 30.1 9.8 100 229-352 21-125 (295)
131 4hc4_A Protein arginine N-meth 42.2 92 0.0032 31.9 9.4 100 256-381 86-186 (376)
132 3tm4_A TRNA (guanine N2-)-meth 41.3 1.2E+02 0.0043 30.3 10.1 110 252-382 216-329 (373)
133 2pt6_A Spermidine synthase; tr 39.6 1.2E+02 0.0041 29.9 9.5 113 254-386 117-232 (321)
134 2o07_A Spermidine synthase; st 39.1 1.6E+02 0.0054 28.8 10.2 136 254-412 96-234 (304)
135 3q87_B N6 adenine specific DNA 38.8 1.2E+02 0.0041 26.4 8.5 34 256-304 26-59 (170)
136 2avn_A Ubiquinone/menaquinone 38.7 2.4E+02 0.0081 26.0 11.4 97 253-383 54-151 (260)
137 1iy9_A Spermidine synthase; ro 38.5 1.3E+02 0.0046 28.7 9.5 134 254-411 76-213 (275)
138 2i62_A Nicotinamide N-methyltr 38.4 1E+02 0.0034 28.3 8.3 46 251-309 54-99 (265)
139 1zx0_A Guanidinoacetate N-meth 37.6 2.3E+02 0.008 25.6 11.9 106 253-382 60-168 (236)
140 2ozv_A Hypothetical protein AT 37.1 1.1E+02 0.0039 28.7 8.6 128 242-384 24-170 (260)
141 3ggd_A SAM-dependent methyltra 37.1 53 0.0018 30.1 6.1 105 254-385 57-165 (245)
142 3m33_A Uncharacterized protein 36.5 1.3E+02 0.0044 27.3 8.7 41 254-308 49-89 (226)
143 3tqs_A Ribosomal RNA small sub 35.4 77 0.0026 30.4 7.1 53 244-310 20-72 (255)
144 2h1r_A Dimethyladenosine trans 35.0 1.5E+02 0.0051 28.8 9.3 54 242-309 31-84 (299)
145 2a14_A Indolethylamine N-methy 34.9 2.7E+02 0.0091 25.9 10.8 47 251-310 53-99 (263)
146 3adn_A Spermidine synthase; am 34.4 1.6E+02 0.0053 28.8 9.3 135 254-412 84-223 (294)
147 1ne2_A Hypothetical protein TA 34.4 1E+02 0.0034 27.3 7.4 43 254-309 52-94 (200)
148 2vdv_E TRNA (guanine-N(7)-)-me 34.2 2.8E+02 0.0095 25.5 11.0 48 253-312 49-96 (246)
149 2gb4_A Thiopurine S-methyltran 34.1 3E+02 0.01 25.9 11.4 105 253-380 68-187 (252)
150 3g89_A Ribosomal RNA small sub 33.2 84 0.0029 29.7 6.9 101 253-382 80-182 (249)
151 4hg2_A Methyltransferase type 33.2 2.5E+02 0.0084 26.7 10.3 100 256-391 42-143 (257)
152 1dl5_A Protein-L-isoaspartate 33.1 2.8E+02 0.0097 26.7 11.0 109 242-382 64-173 (317)
153 3grz_A L11 mtase, ribosomal pr 31.8 1.2E+02 0.0041 26.8 7.4 69 239-324 44-115 (205)
154 1vbf_A 231AA long hypothetical 31.2 2E+02 0.007 25.7 9.0 104 244-383 61-164 (231)
155 1l3i_A Precorrin-6Y methyltran 31.0 1.3E+02 0.0044 25.7 7.3 53 244-310 24-76 (192)
156 1k87_A PUTA, proline dehydroge 30.8 68 0.0023 35.7 6.5 145 236-386 256-436 (669)
157 2i7c_A Spermidine synthase; tr 30.5 1.4E+02 0.0049 28.6 8.2 113 254-385 79-193 (283)
158 3tma_A Methyltransferase; thum 30.5 2.5E+02 0.0086 27.5 10.2 113 245-377 195-310 (354)
159 3tfw_A Putative O-methyltransf 29.9 3E+02 0.01 25.4 10.2 102 254-383 64-169 (248)
160 4dzr_A Protein-(glutamine-N5) 29.3 77 0.0026 27.8 5.6 53 245-309 21-74 (215)
161 3ftd_A Dimethyladenosine trans 28.7 3.7E+02 0.013 25.3 11.5 109 244-385 22-132 (249)
162 4a69_A Histone deacetylase 3,; 28.1 22 0.00077 36.8 1.9 27 245-273 154-180 (376)
163 2ipx_A RRNA 2'-O-methyltransfe 27.4 2.4E+02 0.0081 25.5 8.8 101 254-383 78-181 (233)
164 1inl_A Spermidine synthase; be 26.9 4.3E+02 0.015 25.4 11.4 134 255-412 92-230 (296)
165 1qam_A ERMC' methyltransferase 26.9 89 0.0031 29.3 5.8 52 244-309 21-72 (244)
166 2kw5_A SLR1183 protein; struct 26.6 3.2E+02 0.011 23.7 13.1 98 256-383 32-130 (202)
167 3bwc_A Spermidine synthase; SA 26.6 3.4E+02 0.012 26.2 10.2 114 254-385 96-211 (304)
168 3uzu_A Ribosomal RNA small sub 26.4 1.3E+02 0.0045 29.2 7.1 55 244-308 33-87 (279)
169 2b25_A Hypothetical protein; s 24.9 1.5E+02 0.005 28.9 7.2 73 230-313 82-154 (336)
170 3ew8_A HD8, histone deacetylas 24.8 28 0.00096 36.2 1.9 27 245-273 162-188 (388)
171 1o54_A SAM-dependent O-methylt 24.6 4E+02 0.014 24.8 10.1 57 243-310 102-158 (277)
172 3max_A HD2, histone deacetylas 23.8 30 0.001 35.7 1.9 27 245-273 154-180 (367)
173 1r18_A Protein-L-isoaspartate( 22.9 2.5E+02 0.0085 25.3 8.0 63 244-312 73-137 (227)
174 1u2z_A Histone-lysine N-methyl 22.8 2.7E+02 0.0092 29.0 9.0 119 243-383 232-358 (433)
175 2gpy_A O-methyltransferase; st 22.7 2.6E+02 0.0088 25.2 8.1 101 255-383 56-159 (233)
176 2kl8_A OR15; structural genomi 22.3 1.3E+02 0.0046 23.6 4.9 34 289-324 43-76 (85)
177 2qm3_A Predicted methyltransfe 22.2 5.8E+02 0.02 25.2 12.0 95 254-377 173-270 (373)
178 1mjf_A Spermidine synthase; sp 22.1 1.8E+02 0.0062 27.8 7.1 131 255-411 77-217 (281)
179 3tva_A Xylose isomerase domain 21.3 90 0.0031 29.3 4.7 51 363-413 239-289 (290)
180 3ckk_A TRNA (guanine-N(7)-)-me 21.0 1.7E+02 0.0059 27.2 6.6 50 251-312 44-93 (235)
181 1o9g_A RRNA methyltransferase; 21.0 1.6E+02 0.0054 27.2 6.3 56 245-310 43-98 (250)
182 1uir_A Polyamine aminopropyltr 20.9 5.3E+02 0.018 25.0 10.4 111 254-383 78-194 (314)
183 3mb5_A SAM-dependent methyltra 20.7 2E+02 0.0069 26.3 6.9 58 243-311 83-140 (255)
184 1i9g_A Hypothetical protein RV 20.6 2E+02 0.0068 26.8 6.9 59 243-312 89-147 (280)
185 3ghf_A Septum site-determining 20.6 1.4E+02 0.0048 25.5 5.3 50 256-320 50-99 (120)
186 2fhp_A Methylase, putative; al 20.5 2.7E+02 0.0091 23.7 7.3 106 254-387 45-157 (187)
187 3a27_A TYW2, uncharacterized p 20.4 4.2E+02 0.014 25.0 9.3 95 256-382 122-217 (272)
188 1yz7_A Probable translation in 20.2 1.5E+02 0.0051 27.6 5.8 41 285-326 133-177 (188)
No 1
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=97.40 E-value=0.0037 Score=61.28 Aligned_cols=108 Identities=19% Similarity=0.264 Sum_probs=64.4
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccC
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQ 333 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~ 333 (514)
.-+|+|+|.|. | .+...|+.+-+ +| ..+||||+.+...++...+++.++- .+.+++|.. ..++++.
T Consensus 71 ~~~vLDlGcGt----G----~~~~~la~~~~-~~-~~~v~gvD~s~~ml~~A~~~~~~~~--~~~~v~~~~--~D~~~~~ 136 (261)
T 4gek_A 71 GTQVYDLGCSL----G----AATLSVRRNIH-HD-NCKIIAIDNSPAMIERCRRHIDAYK--APTPVDVIE--GDIRDIA 136 (261)
T ss_dssp TCEEEEETCTT----T----HHHHHHHHTCC-SS-SCEEEEEESCHHHHHHHHHHHHTSC--CSSCEEEEE--SCTTTCC
T ss_pred CCEEEEEeCCC----C----HHHHHHHHhcC-CC-CCEEEEEECCHHHHHHHHHHHHhhc--cCceEEEee--ccccccc
Confidence 34799999643 3 34455666533 34 5899999999888888877765332 223455533 3344333
Q ss_pred cccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCc-EEEEEeec
Q 040125 334 TKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPK-VLVLVEQD 385 (514)
Q Consensus 334 ~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pk-VvvlvE~e 385 (514)
..+-.+++. .+.||++..+ ....+|+.| +.|+|. +++++|.-
T Consensus 137 -----~~~~d~v~~--~~~l~~~~~~---~~~~~l~~i~~~LkpGG~lii~e~~ 180 (261)
T 4gek_A 137 -----IENASMVVL--NFTLQFLEPS---ERQALLDKIYQGLNPGGALVLSEKF 180 (261)
T ss_dssp -----CCSEEEEEE--ESCGGGSCHH---HHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred -----cccccccee--eeeeeecCch---hHhHHHHHHHHHcCCCcEEEEEecc
Confidence 222234444 4567887542 235677766 669998 45555654
No 2
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=96.32 E-value=0.029 Score=52.41 Aligned_cols=176 Identities=13% Similarity=0.160 Sum_probs=91.1
Q ss_pred HHHHhhhc-CCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceE
Q 040125 243 SSILEAFE-GESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLE 321 (514)
Q Consensus 243 qAILEA~~-g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFe 321 (514)
+.+++.+. ..+.-.|+|+|.|. | .+...|+.+- | ..++|||+.+...++.+.+++ +..+ .++
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~----G----~~~~~l~~~~---~-~~~v~~vD~s~~~~~~a~~~~----~~~~-~~~ 95 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGT----G----LLSAFLMEKY---P-EATFTLVDMSEKMLEIAKNRF----RGNL-KVK 95 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTT----S----HHHHHHHHHC---T-TCEEEEEESCHHHHHHHHHHT----CSCT-TEE
T ss_pred HHHHHHhhcCCCCCeEEEecCCC----C----HHHHHHHHhC---C-CCeEEEEECCHHHHHHHHHhh----ccCC-CEE
Confidence 56666665 44568999999753 3 2334455442 3 479999999887776665553 2233 444
Q ss_pred EEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEE-EEeecCCCCCCchHHHHHH
Q 040125 322 FSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLV-LVEQDSSHNGPFFLGRFME 399 (514)
Q Consensus 322 F~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvv-lvE~ea~~nsp~F~~RF~E 399 (514)
|.. ..++++... +..=+|-|...|||+.+. ....+|+.+ +.|+|.-.+ +++.... +.+.+...+..
T Consensus 96 ~~~--~d~~~~~~~------~~fD~v~~~~~l~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~~~ 163 (234)
T 3dtn_A 96 YIE--ADYSKYDFE------EKYDMVVSALSIHHLEDE---DKKELYKRSYSILKESGIFINADLVHG-ETAFIENLNKT 163 (234)
T ss_dssp EEE--SCTTTCCCC------SCEEEEEEESCGGGSCHH---HHHHHHHHHHHHEEEEEEEEEEEECBC-SSHHHHHHHHH
T ss_pred EEe--CchhccCCC------CCceEEEEeCccccCCHH---HHHHHHHHHHHhcCCCcEEEEEEecCC-CChhhhhHHHH
Confidence 433 333333221 333344445677888542 223466655 568998444 4444332 22222222221
Q ss_pred HHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHhHhHhcCCCCccccccchhhHHHHHhcCCceeccC
Q 040125 400 ALHYYSAIFDSLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPM 469 (514)
Q Consensus 400 AL~yYsAlFDSLda~lp~~~~eR~~iE~~~lg~eI~NiVAcEG~~RvERhE~~~~Wr~Rm~~AGF~~v~l 469 (514)
. +...+. . ...+.. ++.+..... ...+.-+.+.|++.|+.|||+.+.+
T Consensus 164 ~---~~~~~~---~--~~~~~~-----------~~~~~~~~~---~~~~~~~~~~~~~ll~~aGF~~v~~ 211 (234)
T 3dtn_A 164 I---WRQYVE---N--SGLTEE-----------EIAAGYERS---KLDKDIEMNQQLNWLKEAGFRDVSC 211 (234)
T ss_dssp H---HHHHHH---T--SSCCHH-----------HHHTTC-------CCCCCBHHHHHHHHHHTTCEEEEE
T ss_pred H---HHHHHH---h--cCCCHH-----------HHHHHHHhc---ccccccCHHHHHHHHHHcCCCceee
Confidence 1 111111 1 111111 111111111 2345567889999999999998765
No 3
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=95.27 E-value=0.54 Score=47.59 Aligned_cols=117 Identities=14% Similarity=0.181 Sum_probs=62.8
Q ss_pred HHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCC--ceE
Q 040125 244 SILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGI--NLE 321 (514)
Q Consensus 244 AILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgv--pFe 321 (514)
.+++.+.....-+|+|+|-| .| .+...|+.+. | .+++|+++. ...++...++ ++..|+ .++
T Consensus 170 ~~l~~~~~~~~~~vlDvG~G----~G----~~~~~l~~~~---p-~~~~~~~D~-~~~~~~a~~~----~~~~~~~~~v~ 232 (363)
T 3dp7_A 170 KALEIVFSHHPKRLLDIGGN----TG----KWATQCVQYN---K-EVEVTIVDL-PQQLEMMRKQ----TAGLSGSERIH 232 (363)
T ss_dssp HHHHHHGGGCCSEEEEESCT----TC----HHHHHHHHHS---T-TCEEEEEEC-HHHHHHHHHH----HTTCTTGGGEE
T ss_pred HHHHHhcccCCCEEEEeCCC----cC----HHHHHHHHhC---C-CCEEEEEeC-HHHHHHHHHH----HHhcCcccceE
Confidence 34555444456799999964 33 2445555552 3 479999997 4455554443 344555 356
Q ss_pred EEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCc-EEEEEeecC
Q 040125 322 FSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPK-VLVLVEQDS 386 (514)
Q Consensus 322 F~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pk-VvvlvE~ea 386 (514)
|..- .+.+... .+. ..-++++.+ ..||++.++ ....+|+.+ +.|+|. .++++|.-.
T Consensus 233 ~~~~--d~~~~~~-~~p-~~~D~v~~~--~vlh~~~~~---~~~~~l~~~~~~L~pgG~l~i~e~~~ 290 (363)
T 3dp7_A 233 GHGA--NLLDRDV-PFP-TGFDAVWMS--QFLDCFSEE---EVISILTRVAQSIGKDSKVYIMETLW 290 (363)
T ss_dssp EEEC--CCCSSSC-CCC-CCCSEEEEE--SCSTTSCHH---HHHHHHHHHHHHCCTTCEEEEEECCT
T ss_pred EEEc--cccccCC-CCC-CCcCEEEEe--chhhhCCHH---HHHHHHHHHHHhcCCCcEEEEEeecc
Confidence 6542 1221110 011 122454444 456877653 234677766 558997 455556443
No 4
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=94.95 E-value=1.2 Score=40.63 Aligned_cols=113 Identities=15% Similarity=0.231 Sum_probs=64.0
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc-eE
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN-LE 321 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp-Fe 321 (514)
+.|++.+.-...-.|+|+|.|. |. + ...|+.+. +| ..++|||+.+...++.+.+++.+ .|++ ++
T Consensus 27 ~~~~~~~~~~~~~~vLDiG~G~----G~-~---~~~l~~~~--~~-~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~ 91 (219)
T 3dh0_A 27 EKVLKEFGLKEGMTVLDVGTGA----GF-Y---LPYLSKMV--GE-KGKVYAIDVQEEMVNYAWEKVNK----LGLKNVE 91 (219)
T ss_dssp HHHHHHHTCCTTCEEEESSCTT----CT-T---HHHHHHHH--TT-TCEEEEEESCHHHHHHHHHHHHH----HTCTTEE
T ss_pred HHHHHHhCCCCCCEEEEEecCC----CH-H---HHHHHHHh--CC-CcEEEEEECCHHHHHHHHHHHHH----cCCCcEE
Confidence 5667777655566899999753 32 2 23333332 23 47999999988777777666543 3443 45
Q ss_pred EEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 040125 322 FSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLV 382 (514)
Q Consensus 322 F~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlv 382 (514)
|.. ..++++. ..++..=+|-+...|||+.+ ...+|+.+ +.|+|.-.+++
T Consensus 92 ~~~--~d~~~~~-----~~~~~fD~v~~~~~l~~~~~-----~~~~l~~~~~~LkpgG~l~i 141 (219)
T 3dh0_A 92 VLK--SEENKIP-----LPDNTVDFIFMAFTFHELSE-----PLKFLEELKRVAKPFAYLAI 141 (219)
T ss_dssp EEE--CBTTBCS-----SCSSCEEEEEEESCGGGCSS-----HHHHHHHHHHHEEEEEEEEE
T ss_pred EEe--cccccCC-----CCCCCeeEEEeehhhhhcCC-----HHHHHHHHHHHhCCCeEEEE
Confidence 533 2233322 22333334445566688743 23455554 66899844443
No 5
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=94.93 E-value=0.88 Score=43.19 Aligned_cols=122 Identities=14% Similarity=0.190 Sum_probs=67.7
Q ss_pred HHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChh------HHHHHHHHHHHHHHhcC
Q 040125 244 SILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVE------KFQSIGDELKDYAKTYG 317 (514)
Q Consensus 244 AILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~------~l~etg~rL~~fA~~lg 317 (514)
.|++.+.-...-+|+|+|.|. | .+...|+.+- | | ..++|||+.+.. .++.+.+++. ..|
T Consensus 34 ~l~~~~~~~~~~~vLDiGcG~----G----~~~~~l~~~~-g-~-~~~v~gvD~s~~~~~~~~~~~~a~~~~~----~~~ 98 (275)
T 3bkx_A 34 AIAEAWQVKPGEKILEIGCGQ----G----DLSAVLADQV-G-S-SGHVTGIDIASPDYGAPLTLGQAWNHLL----AGP 98 (275)
T ss_dssp HHHHHHTCCTTCEEEEESCTT----S----HHHHHHHHHH-C-T-TCEEEEECSSCTTCCSSSCHHHHHHHHH----TST
T ss_pred HHHHHcCCCCCCEEEEeCCCC----C----HHHHHHHHHh-C-C-CCEEEEEECCccccccHHHHHHHHHHHH----hcC
Confidence 456665544556899999643 2 3344455543 2 3 369999998765 5666655543 344
Q ss_pred C--ceEEEeecCCccccCcccccccCC--cEEEEEeccccccccccccchHHHHHHHHHhcCC--cEEEEEeecCCCCCC
Q 040125 318 I--NLEFSVVESNLENLQTKDIKVLEN--EVLVVNSILQLHCVVKESRGALNSVLQIIHELSP--KVLVLVEQDSSHNGP 391 (514)
Q Consensus 318 v--pFeF~~V~~~lE~l~~~~l~~~~~--EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~P--kVvvlvE~ea~~nsp 391 (514)
+ ..+|.... ++....+...++ ++|+. ...|||+.+. ..+++.++.|.| ..+++.+.....+.+
T Consensus 99 ~~~~v~~~~~d----~~~~~~~~~~~~~fD~v~~--~~~l~~~~~~-----~~~~~~~~~l~~~gG~l~~~~~~~~~~~~ 167 (275)
T 3bkx_A 99 LGDRLTVHFNT----NLSDDLGPIADQHFDRVVL--AHSLWYFASA-----NALALLFKNMAAVCDHVDVAEWSMQPTAL 167 (275)
T ss_dssp TGGGEEEECSC----CTTTCCGGGTTCCCSEEEE--ESCGGGSSCH-----HHHHHHHHHHTTTCSEEEEEEECSSCSSG
T ss_pred CCCceEEEECC----hhhhccCCCCCCCEEEEEE--ccchhhCCCH-----HHHHHHHHHHhCCCCEEEEEEecCCCCch
Confidence 4 34554321 111112222222 45544 4455877542 348888888887 367777766554433
No 6
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=94.67 E-value=0.79 Score=43.31 Aligned_cols=109 Identities=13% Similarity=0.173 Sum_probs=62.0
Q ss_pred HHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc-eEE
Q 040125 244 SILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN-LEF 322 (514)
Q Consensus 244 AILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp-FeF 322 (514)
.|++.+.-...-+|+|+|.|. | .+...|+.+. + ++|||+.+...++...+++ +..|++ ++|
T Consensus 28 ~l~~~l~~~~~~~vLDiGcG~----G----~~~~~l~~~~---~---~v~gvD~s~~~l~~a~~~~----~~~~~~~v~~ 89 (260)
T 1vl5_A 28 KLMQIAALKGNEEVLDVATGG----G----HVANAFAPFV---K---KVVAFDLTEDILKVARAFI----EGNGHQQVEY 89 (260)
T ss_dssp HHHHHHTCCSCCEEEEETCTT----C----HHHHHHGGGS---S---EEEEEESCHHHHHHHHHHH----HHTTCCSEEE
T ss_pred HHHHHhCCCCCCEEEEEeCCC----C----HHHHHHHHhC---C---EEEEEeCCHHHHHHHHHHH----HhcCCCceEE
Confidence 344555444556899999643 3 2445666652 2 8999999887777666554 344544 455
Q ss_pred EeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHH-HHhcCCcEEEEE
Q 040125 323 SVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQI-IHELSPKVLVLV 382 (514)
Q Consensus 323 ~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~-Ir~L~PkVvvlv 382 (514)
.. ..++++. ..++..=+|-|...|||+.+ ...+|+. .+-|+|.-.+++
T Consensus 90 ~~--~d~~~l~-----~~~~~fD~V~~~~~l~~~~d-----~~~~l~~~~r~LkpgG~l~~ 138 (260)
T 1vl5_A 90 VQ--GDAEQMP-----FTDERFHIVTCRIAAHHFPN-----PASFVSEAYRVLKKGGQLLL 138 (260)
T ss_dssp EE--CCC-CCC-----SCTTCEEEEEEESCGGGCSC-----HHHHHHHHHHHEEEEEEEEE
T ss_pred EE--ecHHhCC-----CCCCCEEEEEEhhhhHhcCC-----HHHHHHHHHHHcCCCCEEEE
Confidence 43 2233332 22333334445567788854 1344444 467899854444
No 7
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=94.21 E-value=0.75 Score=46.53 Aligned_cols=161 Identities=20% Similarity=0.334 Sum_probs=87.2
Q ss_pred hhHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCce
Q 040125 241 ANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINL 320 (514)
Q Consensus 241 ANqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpF 320 (514)
..+.|++++.-...-+|||+|-+ .| .+..+|+++. | .+|+|..+.|. .++.+.+++. ....=..
T Consensus 167 ~~~~~~~~~~~~~~~~v~DvGgG----~G----~~~~~l~~~~---p-~~~~~~~dlp~-v~~~a~~~~~---~~~~~rv 230 (353)
T 4a6d_A 167 NGRSVLTAFDLSVFPLMCDLGGG----AG----ALAKECMSLY---P-GCKITVFDIPE-VVWTAKQHFS---FQEEEQI 230 (353)
T ss_dssp HHHHHHHSSCGGGCSEEEEETCT----TS----HHHHHHHHHC---S-SCEEEEEECHH-HHHHHHHHSC---C--CCSE
T ss_pred HHHHHHHhcCcccCCeEEeeCCC----CC----HHHHHHHHhC---C-CceeEeccCHH-HHHHHHHhhh---hcccCce
Confidence 35678888765556689999964 34 2455666654 4 68999887642 3433333221 1111124
Q ss_pred EEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCc-EEEEEeecCCC--CCCchHHH
Q 040125 321 EFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPK-VLVLVEQDSSH--NGPFFLGR 396 (514)
Q Consensus 321 eF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pk-VvvlvE~ea~~--nsp~F~~R 396 (514)
+|..- .+ ++. .....+++... .-||+..++. ...+|+.+ +.|+|. .++++|.-.+. +.|.+
T Consensus 231 ~~~~g--D~--~~~---~~~~~D~~~~~--~vlh~~~d~~---~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~--- 295 (353)
T 4a6d_A 231 DFQEG--DF--FKD---PLPEADLYILA--RVLHDWADGK---CSHLLERIYHTCKPGGGILVIESLLDEDRRGPLL--- 295 (353)
T ss_dssp EEEES--CT--TTS---CCCCCSEEEEE--SSGGGSCHHH---HHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHH---
T ss_pred eeecC--cc--ccC---CCCCceEEEee--eecccCCHHH---HHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHH---
Confidence 55432 11 110 12233454443 4568876532 34567766 569997 46666653322 22211
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHhHhHhcCCCCccccccchhhHHHHHhcCCceeccC
Q 040125 397 FMEALHYYSAIFDSLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPM 469 (514)
Q Consensus 397 F~EAL~yYsAlFDSLda~lp~~~~eR~~iE~~~lg~eI~NiVAcEG~~RvERhE~~~~Wr~Rm~~AGF~~v~l 469 (514)
.++|| |.=.+.+.|.+| +.++|++.++.|||+.+.+
T Consensus 296 --------~~~~d------------------------l~ml~~~~g~er-----t~~e~~~ll~~AGf~~v~v 331 (353)
T 4a6d_A 296 --------TQLYS------------------------LNMLVQTEGQER-----TPTHYHMLLSSAGFRDFQF 331 (353)
T ss_dssp --------HHHHH------------------------HHHHHSSSCCCC-----CHHHHHHHHHHHTCEEEEE
T ss_pred --------HHHHH------------------------HHHHHhCCCcCC-----CHHHHHHHHHHCCCceEEE
Confidence 11111 111233456655 5679999999999998765
No 8
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=94.16 E-value=0.49 Score=44.38 Aligned_cols=125 Identities=18% Similarity=0.240 Sum_probs=68.9
Q ss_pred CCccchhHhhhHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHH
Q 040125 232 PHIQFGHFVANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKD 311 (514)
Q Consensus 232 P~~kfahftANqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~ 311 (514)
.++.-+.......+++.+.-...-+|+|+|.|. | .+...|+.+.+ .++|||+.+...++.+.+++..
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~----G----~~~~~l~~~~~-----~~v~~vD~s~~~~~~a~~~~~~ 100 (266)
T 3ujc_A 34 NYISSGGLEATKKILSDIELNENSKVLDIGSGL----G----GGCMYINEKYG-----AHTHGIDICSNIVNMANERVSG 100 (266)
T ss_dssp TCCSTTHHHHHHHHTTTCCCCTTCEEEEETCTT----S----HHHHHHHHHHC-----CEEEEEESCHHHHHHHHHTCCS
T ss_pred CccccchHHHHHHHHHhcCCCCCCEEEEECCCC----C----HHHHHHHHHcC-----CEEEEEeCCHHHHHHHHHHhhc
Confidence 444444455567777777666677999999753 3 34444555432 4899999887666655544322
Q ss_pred HHHhcCCceEEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcE-EEEEee
Q 040125 312 YAKTYGINLEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKV-LVLVEQ 384 (514)
Q Consensus 312 fA~~lgvpFeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkV-vvlvE~ 384 (514)
. -..+|.. ..++++ ...++..=+|-+...|||+..+ ....+|+.+ +-|+|.- +++++.
T Consensus 101 ~-----~~~~~~~--~d~~~~-----~~~~~~fD~v~~~~~l~~~~~~---~~~~~l~~~~~~L~pgG~l~~~~~ 160 (266)
T 3ujc_A 101 N-----NKIIFEA--NDILTK-----EFPENNFDLIYSRDAILALSLE---NKNKLFQKCYKWLKPTGTLLITDY 160 (266)
T ss_dssp C-----TTEEEEE--CCTTTC-----CCCTTCEEEEEEESCGGGSCHH---HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred C-----CCeEEEE--CccccC-----CCCCCcEEEEeHHHHHHhcChH---HHHHHHHHHHHHcCCCCEEEEEEe
Confidence 2 2344433 222222 1223333344455567887421 234555555 6689974 444443
No 9
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=93.93 E-value=3.1 Score=38.84 Aligned_cols=113 Identities=13% Similarity=0.177 Sum_probs=63.7
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc-eE
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN-LE 321 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp-Fe 321 (514)
.-+++.+.-...-+|+|+|.|. |. +...|+.+. + ++|+|+.+...++.+.+++. ..|++ ++
T Consensus 11 ~~~~~~~~~~~~~~vLDiGcG~----G~----~~~~l~~~~---~---~v~~vD~s~~~~~~a~~~~~----~~~~~~v~ 72 (239)
T 1xxl_A 11 GLMIKTAECRAEHRVLDIGAGA----GH----TALAFSPYV---Q---ECIGVDATKEMVEVASSFAQ----EKGVENVR 72 (239)
T ss_dssp HHHHHHHTCCTTCEEEEESCTT----SH----HHHHHGGGS---S---EEEEEESCHHHHHHHHHHHH----HHTCCSEE
T ss_pred chHHHHhCcCCCCEEEEEccCc----CH----HHHHHHHhC---C---EEEEEECCHHHHHHHHHHHH----HcCCCCeE
Confidence 3445556656667899999753 32 344566542 1 89999998877766665543 33443 44
Q ss_pred EEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHH-HHhcCCcEEEE-Eeec
Q 040125 322 FSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQI-IHELSPKVLVL-VEQD 385 (514)
Q Consensus 322 F~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~-Ir~L~PkVvvl-vE~e 385 (514)
|.. ..++++. ..++..=+|-|...+||+.+ ...+|+. .+-|+|.-.++ ++..
T Consensus 73 ~~~--~d~~~~~-----~~~~~fD~v~~~~~l~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~ 126 (239)
T 1xxl_A 73 FQQ--GTAESLP-----FPDDSFDIITCRYAAHHFSD-----VRKAVREVARVLKQDGRFLLVDHY 126 (239)
T ss_dssp EEE--CBTTBCC-----SCTTCEEEEEEESCGGGCSC-----HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEe--cccccCC-----CCCCcEEEEEECCchhhccC-----HHHHHHHHHHHcCCCcEEEEEEcC
Confidence 433 2333332 23333334445566788753 2344544 46789985444 4543
No 10
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=93.85 E-value=1.3 Score=43.02 Aligned_cols=117 Identities=12% Similarity=0.135 Sum_probs=62.3
Q ss_pred CceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccc
Q 040125 252 ESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLEN 331 (514)
Q Consensus 252 ~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~ 331 (514)
....+|+|+|-| .|.--..++..|+.+. |...+.+|+|+++.+.++...+++.+...--++.|+|... ..++
T Consensus 51 ~~~~~VLDiG~G----tG~~~~~~l~~l~~~~--~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~--~~~~ 122 (292)
T 2aot_A 51 KSEIKILSIGGG----AGEIDLQILSKVQAQY--PGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKE--TSSE 122 (292)
T ss_dssp CSEEEEEEETCT----TSHHHHHHHHHHHHHS--TTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECS--CHHH
T ss_pred CCCCeEEEEcCC----CCHHHHHHHHHHHhhC--CCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEec--chhh
Confidence 456799999964 3432234667776653 2212345999999888877766643211111344554332 2222
Q ss_pred cCccc-ccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEE
Q 040125 332 LQTKD-IKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVL 381 (514)
Q Consensus 332 l~~~~-l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvl 381 (514)
+.... ....++..=+|-|...|||+.+ ...+|+.+ |-|+|.-.++
T Consensus 123 ~~~~~~~~~~~~~fD~V~~~~~l~~~~d-----~~~~l~~~~r~LkpgG~l~ 169 (292)
T 2aot_A 123 YQSRMLEKKELQKWDFIHMIQMLYYVKD-----IPATLKFFHSLLGTNAKML 169 (292)
T ss_dssp HHHHHHTTTCCCCEEEEEEESCGGGCSC-----HHHHHHHHHHTEEEEEEEE
T ss_pred hhhhhccccCCCceeEEEEeeeeeecCC-----HHHHHHHHHHHcCCCcEEE
Confidence 21000 0012233445567777899864 24566666 4579984333
No 11
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=93.85 E-value=2.1 Score=41.97 Aligned_cols=116 Identities=13% Similarity=0.099 Sum_probs=68.2
Q ss_pred HHHHhhhcC--CceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc-
Q 040125 243 SSILEAFEG--ESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN- 319 (514)
Q Consensus 243 qAILEA~~g--~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp- 319 (514)
..|++.+.. .+..+|+|+|-+ .| .+...|+.+. | ..++|+++.+ ..++...+++.+ .|++
T Consensus 153 ~~~~~~~~~~~~~~~~vlDvG~G----~G----~~~~~l~~~~---p-~~~~~~~D~~-~~~~~a~~~~~~----~~~~~ 215 (335)
T 2r3s_A 153 QLIAQLVNENKIEPLKVLDISAS----HG----LFGIAVAQHN---P-NAEIFGVDWA-SVLEVAKENARI----QGVAS 215 (335)
T ss_dssp HHHHHHHTC--CCCSEEEEETCT----TC----HHHHHHHHHC---T-TCEEEEEECH-HHHHHHHHHHHH----HTCGG
T ss_pred HHHHHhcccccCCCCEEEEECCC----cC----HHHHHHHHHC---C-CCeEEEEecH-HHHHHHHHHHHh----cCCCc
Confidence 467777765 667899999964 34 2444555543 3 4799999988 777777666543 3443
Q ss_pred -eEEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcE-EEEEeecC
Q 040125 320 -LEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKV-LVLVEQDS 386 (514)
Q Consensus 320 -FeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkV-vvlvE~ea 386 (514)
++|... .+.+.. ...+ .=+|-+...||+..++ ....+|+.+ +.|+|.- ++++|...
T Consensus 216 ~v~~~~~--d~~~~~-----~~~~-~D~v~~~~~l~~~~~~---~~~~~l~~~~~~L~pgG~l~i~e~~~ 274 (335)
T 2r3s_A 216 RYHTIAG--SAFEVD-----YGND-YDLVLLPNFLHHFDVA---TCEQLLRKIKTALAVEGKVIVFDFIP 274 (335)
T ss_dssp GEEEEES--CTTTSC-----CCSC-EEEEEEESCGGGSCHH---HHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred ceEEEec--ccccCC-----CCCC-CcEEEEcchhccCCHH---HHHHHHHHHHHhCCCCcEEEEEeecC
Confidence 555442 222211 1122 3334445567887542 234566665 5589985 66666544
No 12
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=93.84 E-value=1.1 Score=44.88 Aligned_cols=117 Identities=13% Similarity=0.183 Sum_probs=68.6
Q ss_pred hhHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc-
Q 040125 241 ANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN- 319 (514)
Q Consensus 241 ANqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp- 319 (514)
..+.|++.+.-.+.-+|+|+|-+. |. +...|+.+. | .+++|+++. ...++.+.+++. ..|++
T Consensus 178 ~~~~l~~~~~~~~~~~vLDvG~G~----G~----~~~~l~~~~---p-~~~~~~~D~-~~~~~~a~~~~~----~~~~~~ 240 (359)
T 1x19_A 178 AIQLLLEEAKLDGVKKMIDVGGGI----GD----ISAAMLKHF---P-ELDSTILNL-PGAIDLVNENAA----EKGVAD 240 (359)
T ss_dssp HHHHHHHHCCCTTCCEEEEESCTT----CH----HHHHHHHHC---T-TCEEEEEEC-GGGHHHHHHHHH----HTTCTT
T ss_pred hHHHHHHhcCCCCCCEEEEECCcc----cH----HHHHHHHHC---C-CCeEEEEec-HHHHHHHHHHHH----hcCCCC
Confidence 346788887656677999999653 32 344455542 3 489999998 666766666544 33443
Q ss_pred -eEEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCc-EEEEEeecC
Q 040125 320 -LEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPK-VLVLVEQDS 386 (514)
Q Consensus 320 -FeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pk-VvvlvE~ea 386 (514)
++|..- .+.+. ....+++++.+ ..||++.++ ....+|+.+ +.|+|. .++++|...
T Consensus 241 ~v~~~~~--d~~~~-----~~~~~D~v~~~--~vlh~~~d~---~~~~~l~~~~~~L~pgG~l~i~e~~~ 298 (359)
T 1x19_A 241 RMRGIAV--DIYKE-----SYPEADAVLFC--RILYSANEQ---LSTIMCKKAFDAMRSGGRLLILDMVI 298 (359)
T ss_dssp TEEEEEC--CTTTS-----CCCCCSEEEEE--SCGGGSCHH---HHHHHHHHHHTTCCTTCEEEEEEECC
T ss_pred CEEEEeC--ccccC-----CCCCCCEEEEe--chhccCCHH---HHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 555442 22222 12233555554 455887542 235667766 457997 455666543
No 13
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=93.79 E-value=2.1 Score=42.52 Aligned_cols=116 Identities=16% Similarity=0.148 Sum_probs=65.0
Q ss_pred HHHhhhcCCc-eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc--e
Q 040125 244 SILEAFEGES-FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN--L 320 (514)
Q Consensus 244 AILEA~~g~~-~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp--F 320 (514)
.|++.+.-.+ ..+|+|+|-+ .|. +...|+.+- | .+++|+++. ...++...+++ +..++. +
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G----~G~----~~~~l~~~~---p-~~~~~~~D~-~~~~~~a~~~~----~~~~~~~~v 231 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGG----HGT----YLAQVLRRH---P-QLTGQIWDL-PTTRDAARKTI----HAHDLGGRV 231 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCT----TCH----HHHHHHHHC---T-TCEEEEEEC-GGGHHHHHHHH----HHTTCGGGE
T ss_pred HHHHhCCCcCCCCEEEEeCCC----cCH----HHHHHHHhC---C-CCeEEEEEC-HHHHHHHHHHH----HhcCCCCce
Confidence 6777776555 7899999964 342 445555542 3 489999987 44555555443 344543 5
Q ss_pred EEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcE-EEEEeec
Q 040125 321 EFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKV-LVLVEQD 385 (514)
Q Consensus 321 eF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkV-vvlvE~e 385 (514)
+|..- .+.+..+ ..++.+=+|-+...||++.++ ....+|+.+ +.|+|.- ++++|.-
T Consensus 232 ~~~~~--d~~~~~~----~~~~~~D~v~~~~vlh~~~~~---~~~~~l~~~~~~L~pgG~l~i~e~~ 289 (352)
T 3mcz_A 232 EFFEK--NLLDARN----FEGGAADVVMLNDCLHYFDAR---EAREVIGHAAGLVKPGGALLILTMT 289 (352)
T ss_dssp EEEEC--CTTCGGG----GTTCCEEEEEEESCGGGSCHH---HHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEEeC--CcccCcc----cCCCCccEEEEecccccCCHH---HHHHHHHHHHHHcCCCCEEEEEEec
Confidence 55442 1222110 012223344455567887553 235677766 5689974 4455543
No 14
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=93.29 E-value=1.1 Score=44.11 Aligned_cols=116 Identities=13% Similarity=0.138 Sum_probs=63.3
Q ss_pred hHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceE
Q 040125 242 NSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLE 321 (514)
Q Consensus 242 NqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFe 321 (514)
.+.|++.+.-.+ .+|+|+|-+ .| .+...|+.+. | .+++|+++. ...++...+++.+.- +.-.++
T Consensus 157 ~~~~~~~~~~~~-~~vlDvG~G----~G----~~~~~l~~~~---p-~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~ 220 (334)
T 2ip2_A 157 FHEIPRLLDFRG-RSFVDVGGG----SG----ELTKAILQAE---P-SARGVMLDR-EGSLGVARDNLSSLL--AGERVS 220 (334)
T ss_dssp HHHHHHHSCCTT-CEEEEETCT----TC----HHHHHHHHHC---T-TCEEEEEEC-TTCTHHHHHHTHHHH--HTTSEE
T ss_pred HHHHHHhCCCCC-CEEEEeCCC----ch----HHHHHHHHHC---C-CCEEEEeCc-HHHHHHHHHHHhhcC--CCCcEE
Confidence 356777764344 899999964 34 2444555543 3 479999998 666666666554331 111345
Q ss_pred EEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCc-EEEEEeec
Q 040125 322 FSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPK-VLVLVEQD 385 (514)
Q Consensus 322 F~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pk-VvvlvE~e 385 (514)
|..- .+.+ + +. ..-++++ +...||+..++ ....+|+.+ +.|+|. .++++|.-
T Consensus 221 ~~~~--d~~~--~--~~-~~~D~v~--~~~vl~~~~~~---~~~~~l~~~~~~L~pgG~l~i~e~~ 274 (334)
T 2ip2_A 221 LVGG--DMLQ--E--VP-SNGDIYL--LSRIIGDLDEA---ASLRLLGNCREAMAGDGRVVVIERT 274 (334)
T ss_dssp EEES--CTTT--C--CC-SSCSEEE--EESCGGGCCHH---HHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred EecC--CCCC--C--CC-CCCCEEE--EchhccCCCHH---HHHHHHHHHHHhcCCCCEEEEEEec
Confidence 5432 2221 1 11 1224444 34456877543 234566666 568997 45555543
No 15
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=92.95 E-value=2.3 Score=42.96 Aligned_cols=116 Identities=19% Similarity=0.256 Sum_probs=66.0
Q ss_pred hHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCC--c
Q 040125 242 NSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGI--N 319 (514)
Q Consensus 242 NqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgv--p 319 (514)
...|++.+.-.+..+|+|+|-+ .|. +...|+.+. | .+++|+++. ...++...+++. ..|+ .
T Consensus 191 ~~~l~~~~~~~~~~~vlDvG~G----~G~----~~~~l~~~~---p-~~~~~~~D~-~~~~~~a~~~~~----~~~l~~~ 253 (369)
T 3gwz_A 191 AGQVAAAYDFSGAATAVDIGGG----RGS----LMAAVLDAF---P-GLRGTLLER-PPVAEEARELLT----GRGLADR 253 (369)
T ss_dssp HHHHHHHSCCTTCSEEEEETCT----TSH----HHHHHHHHC---T-TCEEEEEEC-HHHHHHHHHHHH----HTTCTTT
T ss_pred HHHHHHhCCCccCcEEEEeCCC----ccH----HHHHHHHHC---C-CCeEEEEcC-HHHHHHHHHhhh----hcCcCCc
Confidence 3567777766667899999964 343 445565552 3 589999998 556666655543 3344 3
Q ss_pred eEEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHH-hcCCc-EEEEEeecC
Q 040125 320 LEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIH-ELSPK-VLVLVEQDS 386 (514)
Q Consensus 320 FeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir-~L~Pk-VvvlvE~ea 386 (514)
.+|..-. +.+ .+.. .-++++.+ ..||+..++ ....+|+.++ .|+|. .++++|.-.
T Consensus 254 v~~~~~d--~~~----~~p~-~~D~v~~~--~vlh~~~d~---~~~~~L~~~~~~L~pgG~l~i~e~~~ 310 (369)
T 3gwz_A 254 CEILPGD--FFE----TIPD-GADVYLIK--HVLHDWDDD---DVVRILRRIATAMKPDSRLLVIDNLI 310 (369)
T ss_dssp EEEEECC--TTT----CCCS-SCSEEEEE--SCGGGSCHH---HHHHHHHHHHTTCCTTCEEEEEEEBC
T ss_pred eEEeccC--CCC----CCCC-CceEEEhh--hhhccCCHH---HHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 5665432 111 1111 22444443 445877543 2235777764 58997 555556543
No 16
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=92.95 E-value=0.62 Score=53.45 Aligned_cols=125 Identities=12% Similarity=0.214 Sum_probs=74.9
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHH--HHhcCCce
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDY--AKTYGINL 320 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~f--A~~lgvpF 320 (514)
+.|++.+.....-.|+|+|-|. | .+...|+.+. +| .-+||||+.+...++.+.++|... ++..|++
T Consensus 711 e~LLelL~~~~g~rVLDVGCGT----G----~lai~LAr~g--~p-~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~- 778 (950)
T 3htx_A 711 EYALKHIRESSASTLVDFGCGS----G----SLLDSLLDYP--TS-LQTIIGVDISPKGLARAAKMLHVKLNKEACNVK- 778 (950)
T ss_dssp HHHHHHHHHSCCSEEEEETCSS----S----HHHHHHTSSC--CC-CCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCS-
T ss_pred HHHHHHhcccCCCEEEEECCCC----C----HHHHHHHHhC--CC-CCeEEEEECCHHHHHHHHHHhhhccchhhcCCC-
Confidence 3455555544556899999753 3 4555666542 34 479999999998888888888765 2344554
Q ss_pred EEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHH-HHhcCCcEEEEEeecCC
Q 040125 321 EFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQI-IHELSPKVLVLVEQDSS 387 (514)
Q Consensus 321 eF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~-Ir~L~PkVvvlvE~ea~ 387 (514)
....+...++++... ...=++|+. ...|||+.+. ....+|+. .+-|+|.++++...+.+
T Consensus 779 nVefiqGDa~dLp~~---d~sFDlVV~--~eVLeHL~dp---~l~~~L~eI~RvLKPG~LIISTPN~e 838 (950)
T 3htx_A 779 SATLYDGSILEFDSR---LHDVDIGTC--LEVIEHMEED---QACEFGEKVLSLFHPKLLIVSTPNYE 838 (950)
T ss_dssp EEEEEESCTTSCCTT---SCSCCEEEE--ESCGGGSCHH---HHHHHHHHHHHTTCCSEEEEEECBGG
T ss_pred ceEEEECchHhCCcc---cCCeeEEEE--eCchhhCChH---HHHHHHHHHHHHcCCCEEEEEecCch
Confidence 233333344444321 111234444 5566888652 23456655 57799997777766543
No 17
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=92.92 E-value=1.6 Score=42.81 Aligned_cols=109 Identities=16% Similarity=0.101 Sum_probs=61.7
Q ss_pred HHHHhhhc-CCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc--
Q 040125 243 SSILEAFE-GESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN-- 319 (514)
Q Consensus 243 qAILEA~~-g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp-- 319 (514)
+.|++.+. -...-+|+|+|.|. | .+...|+.+.+ .++|||+.+...++.+.++ ++..|++
T Consensus 106 ~~l~~~l~~~~~~~~vLDiGcG~----G----~~~~~la~~~~-----~~v~gvD~s~~~~~~a~~~----~~~~~~~~~ 168 (312)
T 3vc1_A 106 EFLMDHLGQAGPDDTLVDAGCGR----G----GSMVMAHRRFG-----SRVEGVTLSAAQADFGNRR----ARELRIDDH 168 (312)
T ss_dssp HHHHTTSCCCCTTCEEEEESCTT----S----HHHHHHHHHHC-----CEEEEEESCHHHHHHHHHH----HHHTTCTTT
T ss_pred HHHHHHhccCCCCCEEEEecCCC----C----HHHHHHHHHcC-----CEEEEEeCCHHHHHHHHHH----HHHcCCCCc
Confidence 34666665 34456899999643 2 34445665532 5899999888777666655 4455665
Q ss_pred eEEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEE
Q 040125 320 LEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVL 381 (514)
Q Consensus 320 FeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvl 381 (514)
.+|.. ..++++. ..++..=+|-+...|||+ + ...+|+.+ +-|+|.-.++
T Consensus 169 v~~~~--~d~~~~~-----~~~~~fD~V~~~~~l~~~-~-----~~~~l~~~~~~LkpgG~l~ 218 (312)
T 3vc1_A 169 VRSRV--CNMLDTP-----FDKGAVTASWNNESTMYV-D-----LHDLFSEHSRFLKVGGRYV 218 (312)
T ss_dssp EEEEE--CCTTSCC-----CCTTCEEEEEEESCGGGS-C-----HHHHHHHHHHHEEEEEEEE
T ss_pred eEEEE--CChhcCC-----CCCCCEeEEEECCchhhC-C-----HHHHHHHHHHHcCCCcEEE
Confidence 55544 2233332 222333233344556777 3 34555554 6789974443
No 18
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=92.84 E-value=4 Score=38.06 Aligned_cols=128 Identities=13% Similarity=0.116 Sum_probs=71.3
Q ss_pred HHhhCCCccchhHhhhHHHHhhhcC-CceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHH
Q 040125 227 VYEICPHIQFGHFVANSSILEAFEG-ESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSI 305 (514)
Q Consensus 227 f~e~sP~~kfahftANqAILEA~~g-~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~et 305 (514)
+|+..+-..-.+......+++.+.+ ...-+|+|+|.|. | .+...|+.+. | . ++|||+.+...++.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLDiG~G~----G----~~~~~l~~~~---~-~-~v~~vD~s~~~~~~a 85 (257)
T 3f4k_A 19 YFKLLKRQGPGSPEATRKAVSFINELTDDAKIADIGCGT----G----GQTLFLADYV---K-G-QITGIDLFPDFIEIF 85 (257)
T ss_dssp HHTTSSCSSSCCHHHHHHHHTTSCCCCTTCEEEEETCTT----S----HHHHHHHHHC---C-S-EEEEEESCHHHHHHH
T ss_pred HHcCccccCCCCHHHHHHHHHHHhcCCCCCeEEEeCCCC----C----HHHHHHHHhC---C-C-eEEEEECCHHHHHHH
Confidence 4444454444555555556666643 2345899999753 3 2344555543 3 2 999999988777666
Q ss_pred HHHHHHHHHhcCCc--eEEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEE-EE
Q 040125 306 GDELKDYAKTYGIN--LEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVL-VL 381 (514)
Q Consensus 306 g~rL~~fA~~lgvp--FeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVv-vl 381 (514)
.++ ++..|++ .+|.. ..++++. ..++..=+|-|...|||+ + ...+|+.+ +-|+|.-. ++
T Consensus 86 ~~~----~~~~~~~~~~~~~~--~d~~~~~-----~~~~~fD~v~~~~~l~~~-~-----~~~~l~~~~~~L~pgG~l~~ 148 (257)
T 3f4k_A 86 NEN----AVKANCADRVKGIT--GSMDNLP-----FQNEELDLIWSEGAIYNI-G-----FERGMNEWSKYLKKGGFIAV 148 (257)
T ss_dssp HHH----HHHTTCTTTEEEEE--CCTTSCS-----SCTTCEEEEEEESCSCCC-C-----HHHHHHHHHTTEEEEEEEEE
T ss_pred HHH----HHHcCCCCceEEEE--CChhhCC-----CCCCCEEEEEecChHhhc-C-----HHHHHHHHHHHcCCCcEEEE
Confidence 555 4455665 55543 2233332 223333344444556887 2 24566655 45899744 44
Q ss_pred Eee
Q 040125 382 VEQ 384 (514)
Q Consensus 382 vE~ 384 (514)
++.
T Consensus 149 ~~~ 151 (257)
T 3f4k_A 149 SEA 151 (257)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
No 19
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=92.82 E-value=1.5 Score=44.59 Aligned_cols=109 Identities=17% Similarity=0.211 Sum_probs=58.8
Q ss_pred hHHHHhhhc-CCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCce
Q 040125 242 NSSILEAFE-GESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINL 320 (514)
Q Consensus 242 NqAILEA~~-g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpF 320 (514)
...|++.+. -...-+|+|+|-| .| .+...|+.+- | .+++|+++. ...++ .|+.. -..
T Consensus 191 ~~~~~~~~~~~~~~~~vlDvG~G----~G----~~~~~l~~~~---p-~~~~~~~D~-~~~~~--------~a~~~-~~v 248 (368)
T 3reo_A 191 MKKILEMYNGFEGLTTIVDVGGG----TG----AVASMIVAKY---P-SINAINFDL-PHVIQ--------DAPAF-SGV 248 (368)
T ss_dssp HHHHHTTCCTTTTCSEEEEETCT----TS----HHHHHHHHHC---T-TCEEEEEEC-HHHHT--------TCCCC-TTE
T ss_pred HHHHHHhcccccCCCEEEEeCCC----cC----HHHHHHHHhC---C-CCEEEEEeh-HHHHH--------hhhhc-CCC
Confidence 345777765 3446799999964 33 2444555543 4 589999986 22222 12222 124
Q ss_pred EEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCc-EEEEEeec
Q 040125 321 EFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPK-VLVLVEQD 385 (514)
Q Consensus 321 eF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pk-VvvlvE~e 385 (514)
+|..- .+.+ + + ..+++++.+. .||++.++ ....+|+.+ +.|+|. .++++|.-
T Consensus 249 ~~~~~--d~~~--~--~--p~~D~v~~~~--vlh~~~~~---~~~~~l~~~~~~L~pgG~l~i~e~~ 302 (368)
T 3reo_A 249 EHLGG--DMFD--G--V--PKGDAIFIKW--ICHDWSDE---HCLKLLKNCYAALPDHGKVIVAEYI 302 (368)
T ss_dssp EEEEC--CTTT--C--C--CCCSEEEEES--CGGGBCHH---HHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred EEEec--CCCC--C--C--CCCCEEEEec--hhhcCCHH---HHHHHHHHHHHHcCCCCEEEEEEec
Confidence 45432 2221 1 1 1235554444 46887653 234677766 568997 45565644
No 20
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=92.53 E-value=1.9 Score=42.55 Aligned_cols=112 Identities=18% Similarity=0.174 Sum_probs=61.8
Q ss_pred HHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCC--ceEE
Q 040125 245 ILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGI--NLEF 322 (514)
Q Consensus 245 ILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgv--pFeF 322 (514)
|++.+.-.+..+|+|+|-+ .| .+...|+.+- | .+++|+++. ...++...+++. ..|+ ..+|
T Consensus 161 ~~~~~~~~~~~~vlDvG~G----~G----~~~~~l~~~~---p-~~~~~~~D~-~~~~~~a~~~~~----~~~~~~~v~~ 223 (332)
T 3i53_A 161 IAAKYDWAALGHVVDVGGG----SG----GLLSALLTAH---E-DLSGTVLDL-QGPASAAHRRFL----DTGLSGRAQV 223 (332)
T ss_dssp GGGSSCCGGGSEEEEETCT----TS----HHHHHHHHHC---T-TCEEEEEEC-HHHHHHHHHHHH----HTTCTTTEEE
T ss_pred HHHhCCCCCCCEEEEeCCC----hh----HHHHHHHHHC---C-CCeEEEecC-HHHHHHHHHhhh----hcCcCcCeEE
Confidence 4444443456799999964 44 3444555543 3 489999987 556666655543 3444 3666
Q ss_pred EeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCc-EEEEEeec
Q 040125 323 SVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPK-VLVLVEQD 385 (514)
Q Consensus 323 ~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pk-VvvlvE~e 385 (514)
..-. +. + .+.. .-+++. |...||+..++ ....+|+.+ +.|+|. .++++|.-
T Consensus 224 ~~~d--~~--~--~~p~-~~D~v~--~~~vlh~~~~~---~~~~~l~~~~~~L~pgG~l~i~e~~ 276 (332)
T 3i53_A 224 VVGS--FF--D--PLPA-GAGGYV--LSAVLHDWDDL---SAVAILRRCAEAAGSGGVVLVIEAV 276 (332)
T ss_dssp EECC--TT--S--CCCC-SCSEEE--EESCGGGSCHH---HHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred ecCC--CC--C--CCCC-CCcEEE--EehhhccCCHH---HHHHHHHHHHHhcCCCCEEEEEeec
Confidence 5432 21 1 1111 223443 44456887653 234566666 568997 44555543
No 21
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=92.02 E-value=1.8 Score=39.49 Aligned_cols=106 Identities=22% Similarity=0.312 Sum_probs=57.5
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCC------ceEEEeecC
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGI------NLEFSVVES 327 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgv------pFeF~~V~~ 327 (514)
.-.|+|+|.|. | .+...|+.+ + .++|+|+.+...++.+.++ ++..++ .++|.. .
T Consensus 31 ~~~vLdiG~G~----G----~~~~~l~~~-~-----~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~--~ 90 (235)
T 3sm3_A 31 DDEILDIGCGS----G----KISLELASK-G-----YSVTGIDINSEAIRLAETA----ARSPGLNQKTGGKAEFKV--E 90 (235)
T ss_dssp TCEEEEETCTT----S----HHHHHHHHT-T-----CEEEEEESCHHHHHHHHHH----TTCCSCCSSSSCEEEEEE--C
T ss_pred CCeEEEECCCC----C----HHHHHHHhC-C-----CeEEEEECCHHHHHHHHHH----HHhcCCccccCcceEEEE--e
Confidence 34799999753 3 244455554 1 4899999887666555443 444555 344433 2
Q ss_pred CccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcE-EEEEeecC
Q 040125 328 NLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKV-LVLVEQDS 386 (514)
Q Consensus 328 ~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkV-vvlvE~ea 386 (514)
.++++. ..++..=+|-+...|||+.+. .....+|+.+ +.|+|.- +++++...
T Consensus 91 d~~~~~-----~~~~~~D~v~~~~~l~~~~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (235)
T 3sm3_A 91 NASSLS-----FHDSSFDFAVMQAFLTSVPDP--KERSRIIKEVFRVLKPGAYLYLVEFGQ 144 (235)
T ss_dssp CTTSCC-----SCTTCEEEEEEESCGGGCCCH--HHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred cccccC-----CCCCceeEEEEcchhhcCCCH--HHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence 233222 223333334444667887642 1233566665 5689974 44445443
No 22
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=91.93 E-value=2.4 Score=40.16 Aligned_cols=105 Identities=19% Similarity=0.285 Sum_probs=59.7
Q ss_pred ceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc-eEEEeecCCccc
Q 040125 253 SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN-LEFSVVESNLEN 331 (514)
Q Consensus 253 ~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp-FeF~~V~~~lE~ 331 (514)
..-+|+|+|.+. | .+...|+.+. | ..++|+|+.+...++.+.+++ +..|++ .+|.. ..+++
T Consensus 37 ~~~~vLDiG~G~----G----~~~~~l~~~~---~-~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~~~--~d~~~ 98 (276)
T 3mgg_A 37 PGAKVLEAGCGI----G----AQTVILAKNN---P-DAEITSIDISPESLEKARENT----EKNGIKNVKFLQ--ANIFS 98 (276)
T ss_dssp TTCEEEETTCTT----S----HHHHHHHHHC---T-TSEEEEEESCHHHHHHHHHHH----HHTTCCSEEEEE--CCGGG
T ss_pred CCCeEEEecCCC----C----HHHHHHHHhC---C-CCEEEEEECCHHHHHHHHHHH----HHcCCCCcEEEE--ccccc
Confidence 456899999753 3 2344555552 3 369999999887776665554 344553 44433 22333
Q ss_pred cCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEE-EEEeec
Q 040125 332 LQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVL-VLVEQD 385 (514)
Q Consensus 332 l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVv-vlvE~e 385 (514)
+. ..++..=+|-+...|||+.+ ...+|+.+ +-|+|.-+ ++++.+
T Consensus 99 ~~-----~~~~~fD~v~~~~~l~~~~~-----~~~~l~~~~~~L~pgG~l~~~~~~ 144 (276)
T 3mgg_A 99 LP-----FEDSSFDHIFVCFVLEHLQS-----PEEALKSLKKVLKPGGTITVIEGD 144 (276)
T ss_dssp CC-----SCTTCEEEEEEESCGGGCSC-----HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CC-----CCCCCeeEEEEechhhhcCC-----HHHHHHHHHHHcCCCcEEEEEEcC
Confidence 22 22343444455566788754 23566555 56899844 444543
No 23
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=91.39 E-value=5.4 Score=37.59 Aligned_cols=113 Identities=17% Similarity=0.272 Sum_probs=63.0
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc--e
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN--L 320 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp--F 320 (514)
..|++.+.-...-+|+|+|.|. | .+...|+.+.+ .++|||+.+...++.+.+++ +..|++ +
T Consensus 51 ~~l~~~~~~~~~~~vLDiGcG~----G----~~~~~l~~~~~-----~~v~gvD~s~~~~~~a~~~~----~~~~~~~~~ 113 (273)
T 3bus_A 51 DEMIALLDVRSGDRVLDVGCGI----G----KPAVRLATARD-----VRVTGISISRPQVNQANARA----TAAGLANRV 113 (273)
T ss_dssp HHHHHHSCCCTTCEEEEESCTT----S----HHHHHHHHHSC-----CEEEEEESCHHHHHHHHHHH----HHTTCTTTE
T ss_pred HHHHHhcCCCCCCEEEEeCCCC----C----HHHHHHHHhcC-----CEEEEEeCCHHHHHHHHHHH----HhcCCCcce
Confidence 3455555444556999999643 2 34445665432 58999998887776665543 444554 5
Q ss_pred EEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcE-EEEEee
Q 040125 321 EFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKV-LVLVEQ 384 (514)
Q Consensus 321 eF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkV-vvlvE~ 384 (514)
+|.. ..++++. ..++..=+|-+...|||+.+ ...+|+.+ +-|+|.- +++.+.
T Consensus 114 ~~~~--~d~~~~~-----~~~~~fD~v~~~~~l~~~~~-----~~~~l~~~~~~L~pgG~l~i~~~ 167 (273)
T 3bus_A 114 TFSY--ADAMDLP-----FEDASFDAVWALESLHHMPD-----RGRALREMARVLRPGGTVAIADF 167 (273)
T ss_dssp EEEE--CCTTSCC-----SCTTCEEEEEEESCTTTSSC-----HHHHHHHHHTTEEEEEEEEEEEE
T ss_pred EEEE--CccccCC-----CCCCCccEEEEechhhhCCC-----HHHHHHHHHHHcCCCeEEEEEEe
Confidence 5543 2233322 22333333444556688743 24566666 5589984 444443
No 24
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=91.38 E-value=2.3 Score=42.62 Aligned_cols=133 Identities=14% Similarity=0.163 Sum_probs=77.1
Q ss_pred HHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEE
Q 040125 244 SILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFS 323 (514)
Q Consensus 244 AILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~ 323 (514)
.|++.+.. --.|+|+|.|.| .|--.++.. +| ..++++++-+...++.+.++ +..+|+++.|.
T Consensus 125 ~i~~~i~~--p~~VLDLGCG~G--------pLAl~~~~~---~p-~a~y~a~DId~~~le~a~~~----l~~~g~~~~~~ 186 (281)
T 3lcv_B 125 ELFRHLPR--PNTLRDLACGLN--------PLAAPWMGL---PA-ETVYIASDIDARLVGFVDEA----LTRLNVPHRTN 186 (281)
T ss_dssp HHGGGSCC--CSEEEETTCTTG--------GGCCTTTTC---CT-TCEEEEEESBHHHHHHHHHH----HHHTTCCEEEE
T ss_pred HHHhccCC--CceeeeeccCcc--------HHHHHHHhh---CC-CCEEEEEeCCHHHHHHHHHH----HHhcCCCceEE
Confidence 34444433 347899986544 333333332 24 58999999888777766655 56779998886
Q ss_pred eecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEeec--CCCCCCchHHHHHHHH
Q 040125 324 VVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLVEQD--SSHNGPFFLGRFMEAL 401 (514)
Q Consensus 324 ~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkVvvlvE~e--a~~nsp~F~~RF~EAL 401 (514)
...-..+. .-.+.+++.+|- .+|+|-++..+ ..++.+..|+|..|++.=+- .+--++-+.
T Consensus 187 v~D~~~~~------p~~~~DvaL~lk--ti~~Le~q~kg---~g~~ll~aL~~~~vvVSfp~ksl~Grs~gm~------- 248 (281)
T 3lcv_B 187 VADLLEDR------LDEPADVTLLLK--TLPCLETQQRG---SGWEVIDIVNSPNIVVTFPTKSLGQRSKGMF------- 248 (281)
T ss_dssp ECCTTTSC------CCSCCSEEEETT--CHHHHHHHSTT---HHHHHHHHSSCSEEEEEEECC-------CHH-------
T ss_pred EeeecccC------CCCCcchHHHHH--HHHHhhhhhhH---HHHHHHHHhCCCCEEEeccchhhcCCCcchh-------
Confidence 54211111 113345555544 45888665443 44599999999988776433 222233332
Q ss_pred HHHHHHHhhhh
Q 040125 402 HYYSAIFDSLD 412 (514)
Q Consensus 402 ~yYsAlFDSLd 412 (514)
..|+..|+..-
T Consensus 249 ~~Y~~~~e~~~ 259 (281)
T 3lcv_B 249 QNYSQSFESQA 259 (281)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 45777777743
No 25
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=91.14 E-value=1.7 Score=44.07 Aligned_cols=108 Identities=17% Similarity=0.214 Sum_probs=58.4
Q ss_pred HHHHhhhc-CCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceE
Q 040125 243 SSILEAFE-GESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLE 321 (514)
Q Consensus 243 qAILEA~~-g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFe 321 (514)
..|++.+. -...-+|+|+|-+ .|. +...|+.+- | .+++|+++.+ ..++ .|+.. -..+
T Consensus 190 ~~~~~~~~~~~~~~~vlDvG~G----~G~----~~~~l~~~~---p-~~~~~~~D~~-~~~~--------~a~~~-~~v~ 247 (364)
T 3p9c_A 190 KKLLELYHGFEGLGTLVDVGGG----VGA----TVAAIAAHY---P-TIKGVNFDLP-HVIS--------EAPQF-PGVT 247 (364)
T ss_dssp HHHHHHCCTTTTCSEEEEETCT----TSH----HHHHHHHHC---T-TCEEEEEECH-HHHT--------TCCCC-TTEE
T ss_pred HHHHHhcccccCCCEEEEeCCC----CCH----HHHHHHHHC---C-CCeEEEecCH-HHHH--------hhhhc-CCeE
Confidence 45777776 3456799999964 342 344555543 3 5899999872 2222 12222 1345
Q ss_pred EEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCc-EEEEEeec
Q 040125 322 FSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPK-VLVLVEQD 385 (514)
Q Consensus 322 F~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pk-VvvlvE~e 385 (514)
|..- .+.+ + + ..+++++. ...||+..++ ....+|+.+ +.|+|. .++++|.-
T Consensus 248 ~~~~--D~~~--~--~--p~~D~v~~--~~vlh~~~d~---~~~~~L~~~~~~L~pgG~l~i~e~~ 300 (364)
T 3p9c_A 248 HVGG--DMFK--E--V--PSGDTILM--KWILHDWSDQ---HCATLLKNCYDALPAHGKVVLVQCI 300 (364)
T ss_dssp EEEC--CTTT--C--C--CCCSEEEE--ESCGGGSCHH---HHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred EEeC--CcCC--C--C--CCCCEEEe--hHHhccCCHH---HHHHHHHHHHHHcCCCCEEEEEEec
Confidence 5432 2221 1 1 12355544 4456887653 234677777 558997 45555643
No 26
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=90.94 E-value=2.5 Score=42.26 Aligned_cols=111 Identities=13% Similarity=0.130 Sum_probs=59.4
Q ss_pred hHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCC--c
Q 040125 242 NSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGI--N 319 (514)
Q Consensus 242 NqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgv--p 319 (514)
...|++.+.-.+.-+|+|+|-| .| .+...|+.+- | .+++|+++.+. .+. .+.++..++ .
T Consensus 173 ~~~~~~~~~~~~~~~vLDvG~G----~G----~~~~~l~~~~---p-~~~~~~~D~~~-~~~------~~~~~~~~~~~~ 233 (348)
T 3lst_A 173 HLILARAGDFPATGTVADVGGG----RG----GFLLTVLREH---P-GLQGVLLDRAE-VVA------RHRLDAPDVAGR 233 (348)
T ss_dssp HHHHHHHSCCCSSEEEEEETCT----TS----HHHHHHHHHC---T-TEEEEEEECHH-HHT------TCCCCCGGGTTS
T ss_pred HHHHHHhCCccCCceEEEECCc----cC----HHHHHHHHHC---C-CCEEEEecCHH-Hhh------cccccccCCCCC
Confidence 3467787765667899999964 33 2344555543 3 58999998742 221 111222232 2
Q ss_pred eEEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCc-EEEEEee
Q 040125 320 LEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPK-VLVLVEQ 384 (514)
Q Consensus 320 FeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pk-VvvlvE~ 384 (514)
.+|..-. +. + .+. .-++++. ...||+..++ ....+|+.+ +.|+|. .++++|.
T Consensus 234 v~~~~~d--~~--~--~~p--~~D~v~~--~~vlh~~~d~---~~~~~L~~~~~~LkpgG~l~i~e~ 287 (348)
T 3lst_A 234 WKVVEGD--FL--R--EVP--HADVHVL--KRILHNWGDE---DSVRILTNCRRVMPAHGRVLVIDA 287 (348)
T ss_dssp EEEEECC--TT--T--CCC--CCSEEEE--ESCGGGSCHH---HHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred eEEEecC--CC--C--CCC--CCcEEEE--ehhccCCCHH---HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 5554421 11 1 111 2234444 4456887653 224677766 568997 4455554
No 27
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=90.91 E-value=4.4 Score=40.43 Aligned_cols=113 Identities=21% Similarity=0.269 Sum_probs=65.0
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc--e
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN--L 320 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp--F 320 (514)
..|++.+.-.+..+|+|+|.| .| .+...|+.+. | .+++|+++. ...++.+.+++. ..|++ +
T Consensus 172 ~~~~~~~~~~~~~~vlDvG~G----~G----~~~~~l~~~~---~-~~~~~~~D~-~~~~~~a~~~~~----~~~~~~~v 234 (374)
T 1qzz_A 172 EAPADAYDWSAVRHVLDVGGG----NG----GMLAAIALRA---P-HLRGTLVEL-AGPAERARRRFA----DAGLADRV 234 (374)
T ss_dssp HHHHHTSCCTTCCEEEEETCT----TS----HHHHHHHHHC---T-TCEEEEEEC-HHHHHHHHHHHH----HTTCTTTE
T ss_pred HHHHHhCCCCCCCEEEEECCC----cC----HHHHHHHHHC---C-CCEEEEEeC-HHHHHHHHHHHH----hcCCCCce
Confidence 567777765566799999964 34 3445555543 3 589999998 666666655543 34543 5
Q ss_pred EEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcE-EEEEee
Q 040125 321 EFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKV-LVLVEQ 384 (514)
Q Consensus 321 eF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkV-vvlvE~ 384 (514)
+|..-. +.+ .+ +...=+|-+...||++.++. ...+|+.+ +.|+|.- ++++|.
T Consensus 235 ~~~~~d--~~~----~~---~~~~D~v~~~~vl~~~~~~~---~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 235 TVAEGD--FFK----PL---PVTADVVLLSFVLLNWSDED---ALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp EEEECC--TTS----CC---SCCEEEEEEESCGGGSCHHH---HHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEEeCC--CCC----cC---CCCCCEEEEeccccCCCHHH---HHHHHHHHHHhcCCCcEEEEEec
Confidence 664421 211 01 11122344455668875431 23566655 5689985 555665
No 28
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=90.88 E-value=3.6 Score=40.94 Aligned_cols=114 Identities=18% Similarity=0.261 Sum_probs=63.6
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCC--ce
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGI--NL 320 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgv--pF 320 (514)
+.|++.+.-.+..+|+|+|-+ .| .+...|+.+. | .+++|+++. ...++.+.+++ +..|+ .+
T Consensus 173 ~~l~~~~~~~~~~~vLDvG~G----~G----~~~~~l~~~~---~-~~~~~~~D~-~~~~~~a~~~~----~~~~~~~~v 235 (360)
T 1tw3_A 173 DAPAAAYDWTNVRHVLDVGGG----KG----GFAAAIARRA---P-HVSATVLEM-AGTVDTARSYL----KDEGLSDRV 235 (360)
T ss_dssp HHHHHHSCCTTCSEEEEETCT----TS----HHHHHHHHHC---T-TCEEEEEEC-TTHHHHHHHHH----HHTTCTTTE
T ss_pred HHHHHhCCCccCcEEEEeCCc----Cc----HHHHHHHHhC---C-CCEEEEecC-HHHHHHHHHHH----HhcCCCCce
Confidence 567777765566799999965 34 2334455542 3 589999997 55565555554 33455 36
Q ss_pred EEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcE-EEEEeec
Q 040125 321 EFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKV-LVLVEQD 385 (514)
Q Consensus 321 eF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkV-vvlvE~e 385 (514)
+|..- .+.+ .+ ++..=+|-+...||++.++ ....+|+.+ +.|+|.- ++++|..
T Consensus 236 ~~~~~--d~~~----~~---~~~~D~v~~~~vl~~~~~~---~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 236 DVVEG--DFFE----PL---PRKADAIILSFVLLNWPDH---DAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp EEEEC--CTTS----CC---SSCEEEEEEESCGGGSCHH---HHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEeC--CCCC----CC---CCCccEEEEcccccCCCHH---HHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 66542 1211 01 1113234444556887542 123566665 5589985 5555644
No 29
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=90.69 E-value=3.7 Score=41.71 Aligned_cols=113 Identities=17% Similarity=0.157 Sum_probs=63.4
Q ss_pred ceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhc-C----CceEEEeecC
Q 040125 253 SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTY-G----INLEFSVVES 327 (514)
Q Consensus 253 ~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~l-g----vpFeF~~V~~ 327 (514)
..-+|+|+|.|. | .|. ..|+.+-+ | ..++|||+.+...++.+.+++.+.+... | -..+|..-
T Consensus 83 ~~~~VLDlGcG~----G-~~~---~~la~~~~--~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~-- 149 (383)
T 4fsd_A 83 EGATVLDLGCGT----G-RDV---YLASKLVG--E-HGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKG-- 149 (383)
T ss_dssp TTCEEEEESCTT----S-HHH---HHHHHHHT--T-TCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEES--
T ss_pred CCCEEEEecCcc----C-HHH---HHHHHHhC--C-CCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEc--
Confidence 345899999753 3 232 33333321 2 3699999999888888888888776654 4 34555442
Q ss_pred CccccCcc-cccccCC--cEEEEEeccccccccccccchHHHHHHHH-HhcCCcEE-EEEeec
Q 040125 328 NLENLQTK-DIKVLEN--EVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVL-VLVEQD 385 (514)
Q Consensus 328 ~lE~l~~~-~l~~~~~--EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVv-vlvE~e 385 (514)
.++++... .....++ ++|+.| ..||++.+ ...+|+.+ +-|+|.-. ++.+..
T Consensus 150 d~~~l~~~~~~~~~~~~fD~V~~~--~~l~~~~d-----~~~~l~~~~r~LkpgG~l~i~~~~ 205 (383)
T 4fsd_A 150 FIENLATAEPEGVPDSSVDIVISN--CVCNLSTN-----KLALFKEIHRVLRDGGELYFSDVY 205 (383)
T ss_dssp CTTCGGGCBSCCCCTTCEEEEEEE--SCGGGCSC-----HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cHHHhhhcccCCCCCCCEEEEEEc--cchhcCCC-----HHHHHHHHHHHcCCCCEEEEEEec
Confidence 23332110 0022233 344444 45577643 23555555 67899844 444543
No 30
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=90.53 E-value=3.5 Score=37.68 Aligned_cols=115 Identities=16% Similarity=0.245 Sum_probs=64.4
Q ss_pred HHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCC------
Q 040125 245 ILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGI------ 318 (514)
Q Consensus 245 ILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgv------ 318 (514)
|++.+.....-.|+|+|.|. | .+...|+.+. | ..++|||+.+...++.+.+++ +..|+
T Consensus 21 l~~~l~~~~~~~vLDiGcG~----G----~~~~~l~~~~---~-~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~~~~ 84 (217)
T 3jwh_A 21 VVAALKQSNARRVIDLGCGQ----G----NLLKILLKDS---F-FEQITGVDVSYRSLEIAQERL----DRLRLPRNQWE 84 (217)
T ss_dssp HHHHHHHTTCCEEEEETCTT----C----HHHHHHHHCT---T-CSEEEEEESCHHHHHHHHHHH----TTCCCCHHHHT
T ss_pred HHHHHHhcCCCEEEEeCCCC----C----HHHHHHHhhC---C-CCEEEEEECCHHHHHHHHHHH----HHhcCCcccCc
Confidence 34444434455899999753 3 2445566542 2 369999999887777776654 33444
Q ss_pred ceEEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEeec
Q 040125 319 NLEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVEQD 385 (514)
Q Consensus 319 pFeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE~e 385 (514)
.++|..- .++.+.. ....=++|+ |...|||+.+ .....+|+.+ +.|+|..++++...
T Consensus 85 ~v~~~~~--d~~~~~~---~~~~fD~v~--~~~~l~~~~~---~~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 85 RLQLIQG--ALTYQDK---RFHGYDAAT--VIEVIEHLDL---SRLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp TEEEEEC--CTTSCCG---GGCSCSEEE--EESCGGGCCH---HHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred ceEEEeC--Ccccccc---cCCCcCEEe--eHHHHHcCCH---HHHHHHHHHHHHHcCCCEEEEEccC
Confidence 3455432 2322221 111224444 4455688743 2345677766 45899977666544
No 31
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=90.19 E-value=2.3 Score=41.31 Aligned_cols=112 Identities=9% Similarity=0.117 Sum_probs=65.7
Q ss_pred HHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc--eE
Q 040125 244 SILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN--LE 321 (514)
Q Consensus 244 AILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp--Fe 321 (514)
.|++.+.-...-+|+|+|.| |-.+...|+.+.+ .++|||+.+...++.+.+++ +..|++ .+
T Consensus 63 ~~~~~~~~~~~~~vLDiGcG--------~G~~~~~la~~~~-----~~v~gvD~s~~~~~~a~~~~----~~~~~~~~v~ 125 (302)
T 3hem_A 63 LALDKLNLEPGMTLLDIGCG--------WGSTMRHAVAEYD-----VNVIGLTLSENQYAHDKAMF----DEVDSPRRKE 125 (302)
T ss_dssp HHHHTTCCCTTCEEEEETCT--------TSHHHHHHHHHHC-----CEEEEEECCHHHHHHHHHHH----HHSCCSSCEE
T ss_pred HHHHHcCCCCcCEEEEeecc--------CcHHHHHHHHhCC-----CEEEEEECCHHHHHHHHHHH----HhcCCCCceE
Confidence 45666655556789999964 2345556666532 48999999887777766654 445665 44
Q ss_pred EEeecCCccccCcccccccCCcEEEEEecccccccccc----ccchHHHHHHHH-HhcCCcEEEEE
Q 040125 322 FSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKE----SRGALNSVLQII-HELSPKVLVLV 382 (514)
Q Consensus 322 F~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~e----s~~~~~~~L~~I-r~L~PkVvvlv 382 (514)
|.. ..++++ -..=++|+.+ ..+||+.+. .......+|+.+ +-|+|.-.+++
T Consensus 126 ~~~--~d~~~~------~~~fD~v~~~--~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 181 (302)
T 3hem_A 126 VRI--QGWEEF------DEPVDRIVSL--GAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLL 181 (302)
T ss_dssp EEE--CCGGGC------CCCCSEEEEE--SCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEE
T ss_pred EEE--CCHHHc------CCCccEEEEc--chHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence 433 333333 1112445444 456888653 223445666665 56899844443
No 32
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=90.12 E-value=1.9 Score=40.11 Aligned_cols=113 Identities=11% Similarity=0.181 Sum_probs=62.3
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEE
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEF 322 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF 322 (514)
..+++.+.....-+|+|+|.|. |. +...|+.+. ..++|+|+.+...++.+.+++.+. -..+|
T Consensus 83 ~~~l~~l~~~~~~~vLDiG~G~----G~----~~~~l~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~ 144 (254)
T 1xtp_A 83 RNFIASLPGHGTSRALDCGAGI----GR----ITKNLLTKL-----YATTDLLEPVKHMLEEAKRELAGM-----PVGKF 144 (254)
T ss_dssp HHHHHTSTTCCCSEEEEETCTT----TH----HHHHTHHHH-----CSEEEEEESCHHHHHHHHHHTTTS-----SEEEE
T ss_pred HHHHHhhcccCCCEEEEECCCc----CH----HHHHHHHhh-----cCEEEEEeCCHHHHHHHHHHhccC-----CceEE
Confidence 4566666555677999999753 32 334454432 248999998877776666554321 23444
Q ss_pred EeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 040125 323 SVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 323 ~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE 383 (514)
.. ..++++. ..++..=+|-|...|||+.++ ....+|+.+ +.|+|.-.+++.
T Consensus 145 ~~--~d~~~~~-----~~~~~fD~v~~~~~l~~~~~~---~~~~~l~~~~~~LkpgG~l~i~ 196 (254)
T 1xtp_A 145 IL--ASMETAT-----LPPNTYDLIVIQWTAIYLTDA---DFVKFFKHCQQALTPNGYIFFK 196 (254)
T ss_dssp EE--SCGGGCC-----CCSSCEEEEEEESCGGGSCHH---HHHHHHHHHHHHEEEEEEEEEE
T ss_pred EE--ccHHHCC-----CCCCCeEEEEEcchhhhCCHH---HHHHHHHHHHHhcCCCeEEEEE
Confidence 32 2333332 223323233345567888542 234555554 678998544443
No 33
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=89.61 E-value=2.1 Score=38.52 Aligned_cols=97 Identities=13% Similarity=0.093 Sum_probs=54.2
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccC
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQ 333 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~ 333 (514)
.-.|+|+|.|. |. +...|+.+ + .++|||+.+...++...++ .-..+|.. ..++++
T Consensus 42 ~~~vLDiGcG~----G~----~~~~l~~~-~-----~~v~gvD~s~~~~~~a~~~--------~~~~~~~~--~d~~~~- 96 (203)
T 3h2b_A 42 DGVILDVGSGT----GR----WTGHLASL-G-----HQIEGLEPATRLVELARQT--------HPSVTFHH--GTITDL- 96 (203)
T ss_dssp CSCEEEETCTT----CH----HHHHHHHT-T-----CCEEEECCCHHHHHHHHHH--------CTTSEEEC--CCGGGG-
T ss_pred CCeEEEecCCC----CH----HHHHHHhc-C-----CeEEEEeCCHHHHHHHHHh--------CCCCeEEe--Cccccc-
Confidence 56899999753 32 45566665 2 3899999887666655544 11233322 223332
Q ss_pred cccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 040125 334 TKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLV 382 (514)
Q Consensus 334 ~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlv 382 (514)
...++..=+|-|...|||+..+ ....+|+.+ +.|+|.-.+++
T Consensus 97 ----~~~~~~fD~v~~~~~l~~~~~~---~~~~~l~~~~~~L~pgG~l~i 139 (203)
T 3h2b_A 97 ----SDSPKRWAGLLAWYSLIHMGPG---ELPDALVALRMAVEDGGGLLM 139 (203)
T ss_dssp ----GGSCCCEEEEEEESSSTTCCTT---THHHHHHHHHHTEEEEEEEEE
T ss_pred ----ccCCCCeEEEEehhhHhcCCHH---HHHHHHHHHHHHcCCCcEEEE
Confidence 2223433344455667887532 234566555 66899754444
No 34
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=88.84 E-value=4.3 Score=36.42 Aligned_cols=113 Identities=14% Similarity=0.171 Sum_probs=65.9
Q ss_pred hhHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc-
Q 040125 241 ANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN- 319 (514)
Q Consensus 241 ANqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp- 319 (514)
..+.|++.+.-... +|+|+|.|. | .+...|+.+ | ..++|+|+.+...++.+.+++. ..|+.
T Consensus 32 ~~~~~~~~~~~~~~-~vLdiG~G~----G----~~~~~l~~~----~-~~~v~~~D~s~~~~~~a~~~~~----~~~~~~ 93 (219)
T 3dlc_A 32 IAENIINRFGITAG-TCIDIGSGP----G----ALSIALAKQ----S-DFSIRALDFSKHMNEIALKNIA----DANLND 93 (219)
T ss_dssp HHHHHHHHHCCCEE-EEEEETCTT----S----HHHHHHHHH----S-EEEEEEEESCHHHHHHHHHHHH----HTTCTT
T ss_pred HHHHHHHhcCCCCC-EEEEECCCC----C----HHHHHHHHc----C-CCeEEEEECCHHHHHHHHHHHH----hccccC
Confidence 34566676665556 999999753 3 245556665 2 4899999998877777666543 44543
Q ss_pred -eEEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 040125 320 -LEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 320 -FeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE 383 (514)
++|.. ..++++. ..++..=+|-+...|||+.+ ...+|+.+ +.|+|.-.+++.
T Consensus 94 ~~~~~~--~d~~~~~-----~~~~~~D~v~~~~~l~~~~~-----~~~~l~~~~~~L~pgG~l~~~ 147 (219)
T 3dlc_A 94 RIQIVQ--GDVHNIP-----IEDNYADLIVSRGSVFFWED-----VATAFREIYRILKSGGKTYIG 147 (219)
T ss_dssp TEEEEE--CBTTBCS-----SCTTCEEEEEEESCGGGCSC-----HHHHHHHHHHHEEEEEEEEEE
T ss_pred ceEEEE--cCHHHCC-----CCcccccEEEECchHhhccC-----HHHHHHHHHHhCCCCCEEEEE
Confidence 45543 2233322 22333333445556788732 23455554 668998655553
No 35
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=88.19 E-value=5.3 Score=36.17 Aligned_cols=96 Identities=21% Similarity=0.225 Sum_probs=55.2
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccC
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQ 333 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~ 333 (514)
.-.|+|+|.|. | .+...|+.+ + .++|||+.+...++.+.+++ ++.+.- ..++++.
T Consensus 44 ~~~vLDiGcG~----G----~~~~~l~~~-~-----~~v~~vD~s~~~~~~a~~~~-------~~~~~~----~d~~~~~ 98 (211)
T 3e23_A 44 GAKILELGCGA----G----YQAEAMLAA-G-----FDVDATDGSPELAAEASRRL-------GRPVRT----MLFHQLD 98 (211)
T ss_dssp TCEEEESSCTT----S----HHHHHHHHT-T-----CEEEEEESCHHHHHHHHHHH-------TSCCEE----CCGGGCC
T ss_pred CCcEEEECCCC----C----HHHHHHHHc-C-----CeEEEECCCHHHHHHHHHhc-------CCceEE----eeeccCC
Confidence 45799999753 3 245556654 1 48999999887777666654 443321 2233322
Q ss_pred cccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 040125 334 TKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 334 ~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE 383 (514)
.++..=+|-|...|||+..+ ....+|+.+ +.|+|.-++++.
T Consensus 99 ------~~~~fD~v~~~~~l~~~~~~---~~~~~l~~~~~~LkpgG~l~~~ 140 (211)
T 3e23_A 99 ------AIDAYDAVWAHACLLHVPRD---ELADVLKLIWRALKPGGLFYAS 140 (211)
T ss_dssp ------CCSCEEEEEECSCGGGSCHH---HHHHHHHHHHHHEEEEEEEEEE
T ss_pred ------CCCcEEEEEecCchhhcCHH---HHHHHHHHHHHhcCCCcEEEEE
Confidence 22323334455667887632 234566555 568998555553
No 36
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=87.82 E-value=10 Score=34.91 Aligned_cols=101 Identities=8% Similarity=0.072 Sum_probs=55.2
Q ss_pred eEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccCc
Q 040125 255 VHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQT 334 (514)
Q Consensus 255 VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~~ 334 (514)
-.|+|+|.|. | .+...|+. + ..++|||+.+...++.+.+++.+.- ..-.++|.. ..+.++.+
T Consensus 68 ~~vLDiGcG~----G----~~~~~l~~-----~-~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~--~d~~~~~~ 129 (235)
T 3lcc_A 68 GRALVPGCGG----G----HDVVAMAS-----P-ERFVVGLDISESALAKANETYGSSP--KAEYFSFVK--EDVFTWRP 129 (235)
T ss_dssp EEEEEETCTT----C----HHHHHHCB-----T-TEEEEEECSCHHHHHHHHHHHTTSG--GGGGEEEEC--CCTTTCCC
T ss_pred CCEEEeCCCC----C----HHHHHHHh-----C-CCeEEEEECCHHHHHHHHHHhhccC--CCcceEEEE--CchhcCCC
Confidence 4999999753 3 23334554 2 3789999998877777766543211 112344433 22333322
Q ss_pred ccccccCCcEEEEEeccccccccccccchHHHHHHHHH-hcCCcEEEEE
Q 040125 335 KDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIH-ELSPKVLVLV 382 (514)
Q Consensus 335 ~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir-~L~PkVvvlv 382 (514)
. +..=+|-+...||++..+ ....+|+.++ .|+|.-.+++
T Consensus 130 ~------~~fD~v~~~~~l~~~~~~---~~~~~l~~~~~~LkpgG~l~~ 169 (235)
T 3lcc_A 130 T------ELFDLIFDYVFFCAIEPE---MRPAWAKSMYELLKPDGELIT 169 (235)
T ss_dssp S------SCEEEEEEESSTTTSCGG---GHHHHHHHHHHHEEEEEEEEE
T ss_pred C------CCeeEEEEChhhhcCCHH---HHHHHHHHHHHHCCCCcEEEE
Confidence 1 112223344556887532 3456776665 4899855554
No 37
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=87.80 E-value=4.7 Score=36.76 Aligned_cols=119 Identities=14% Similarity=0.225 Sum_probs=66.3
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCC----
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGI---- 318 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgv---- 318 (514)
+.|++.+...+.-.|+|+|.+. | .+...|+.+. | ..++|||+.+...++.+.+++. ..++
T Consensus 19 ~~l~~~l~~~~~~~vLDiGcG~----G----~~~~~l~~~~---~-~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~ 82 (219)
T 3jwg_A 19 GTVVAVLKSVNAKKVIDLGCGE----G----NLLSLLLKDK---S-FEQITGVDVSYSVLERAKDRLK----IDRLPEMQ 82 (219)
T ss_dssp HHHHHHHHHTTCCEEEEETCTT----C----HHHHHHHTST---T-CCEEEEEESCHHHHHHHHHHHT----GGGSCHHH
T ss_pred HHHHHHHhhcCCCEEEEecCCC----C----HHHHHHHhcC---C-CCEEEEEECCHHHHHHHHHHHH----hhcccccc
Confidence 3444555444556899999753 3 2445566542 2 3799999998877777766643 2222
Q ss_pred --ceEEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEeecCC
Q 040125 319 --NLEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVEQDSS 387 (514)
Q Consensus 319 --pFeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE~ea~ 387 (514)
.++|..- .++.+... ...=++|+ |...|||+.++ ....+|+.+ +.|+|..++++.....
T Consensus 83 ~~~v~~~~~--d~~~~~~~---~~~fD~V~--~~~~l~~~~~~---~~~~~l~~~~~~LkpgG~~i~~~~~~ 144 (219)
T 3jwg_A 83 RKRISLFQS--SLVYRDKR---FSGYDAAT--VIEVIEHLDEN---RLQAFEKVLFEFTRPQTVIVSTPNKE 144 (219)
T ss_dssp HTTEEEEEC--CSSSCCGG---GTTCSEEE--EESCGGGCCHH---HHHHHHHHHHTTTCCSEEEEEEEBGG
T ss_pred CcceEEEeC--cccccccc---cCCCCEEE--EHHHHHhCCHH---HHHHHHHHHHHhhCCCEEEEEccchh
Confidence 3444332 22222211 11123444 45566888542 234666665 5689998777665543
No 38
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=87.74 E-value=9.6 Score=34.96 Aligned_cols=98 Identities=17% Similarity=0.132 Sum_probs=53.9
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccC
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQ 333 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~ 333 (514)
.-+|+|+|.|. | .+...|+.+ + .++|||+.+...++.+.++. .+..++|... .++++.
T Consensus 54 ~~~vLDiG~G~----G----~~~~~l~~~-~-----~~v~~vD~s~~~~~~a~~~~------~~~~~~~~~~--d~~~~~ 111 (242)
T 3l8d_A 54 EAEVLDVGCGD----G----YGTYKLSRT-G-----YKAVGVDISEVMIQKGKERG------EGPDLSFIKG--DLSSLP 111 (242)
T ss_dssp TCEEEEETCTT----S----HHHHHHHHT-T-----CEEEEEESCHHHHHHHHTTT------CBTTEEEEEC--BTTBCS
T ss_pred CCeEEEEcCCC----C----HHHHHHHHc-C-----CeEEEEECCHHHHHHHHhhc------ccCCceEEEc--chhcCC
Confidence 44899999753 3 244566665 2 48999998876665554431 1233444432 233322
Q ss_pred cccccccCCcEEEEEeccccccccccccchHHHHHHH-HHhcCCcEEEEEe
Q 040125 334 TKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQI-IHELSPKVLVLVE 383 (514)
Q Consensus 334 ~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~-Ir~L~PkVvvlvE 383 (514)
..++..=+|-|...|||+.+ ...+|+. .+.|+|.-++++.
T Consensus 112 -----~~~~~fD~v~~~~~l~~~~~-----~~~~l~~~~~~L~pgG~l~i~ 152 (242)
T 3l8d_A 112 -----FENEQFEAIMAINSLEWTEE-----PLRALNEIKRVLKSDGYACIA 152 (242)
T ss_dssp -----SCTTCEEEEEEESCTTSSSC-----HHHHHHHHHHHEEEEEEEEEE
T ss_pred -----CCCCCccEEEEcChHhhccC-----HHHHHHHHHHHhCCCeEEEEE
Confidence 22343434445566788743 2344444 4678997544443
No 39
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=86.71 E-value=23 Score=33.88 Aligned_cols=106 Identities=16% Similarity=0.159 Sum_probs=58.7
Q ss_pred CceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccc
Q 040125 252 ESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLEN 331 (514)
Q Consensus 252 ~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~ 331 (514)
.+...|+|+|.|. | . +...|+.+- |+ ..++|||+.+...++.+.+++ +..+..++|.. ..+++
T Consensus 21 ~~~~~vLDiGcG~----G-~---~~~~l~~~~--~~-~~~v~gvD~s~~~~~~a~~~~----~~~~~~v~~~~--~d~~~ 83 (284)
T 3gu3_A 21 TKPVHIVDYGCGY----G-Y---LGLVLMPLL--PE-GSKYTGIDSGETLLAEARELF----RLLPYDSEFLE--GDATE 83 (284)
T ss_dssp CSCCEEEEETCTT----T-H---HHHHHTTTS--CT-TCEEEEEESCHHHHHHHHHHH----HSSSSEEEEEE--SCTTT
T ss_pred CCCCeEEEecCCC----C-H---HHHHHHHhC--CC-CCEEEEEECCHHHHHHHHHHH----HhcCCceEEEE--cchhh
Confidence 3467899999753 3 2 334455542 22 379999998877666655543 44555555543 23333
Q ss_pred cCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEE-EEeec
Q 040125 332 LQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLV-LVEQD 385 (514)
Q Consensus 332 l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvv-lvE~e 385 (514)
+.. ++..=+|-+...|||+.+ ...+|+.+ +.|+|.-.+ +++.+
T Consensus 84 ~~~------~~~fD~v~~~~~l~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 84 IEL------NDKYDIAICHAFLLHMTT-----PETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp CCC------SSCEEEEEEESCGGGCSS-----HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCc------CCCeeEEEECChhhcCCC-----HHHHHHHHHHHcCCCCEEEEEecc
Confidence 321 222223334455687753 23455544 678998444 44544
No 40
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=86.69 E-value=7.1 Score=37.18 Aligned_cols=111 Identities=9% Similarity=0.089 Sum_probs=60.9
Q ss_pred HHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc--eE
Q 040125 244 SILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN--LE 321 (514)
Q Consensus 244 AILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp--Fe 321 (514)
.|++.+.-...-+|+|+|.|. -.+...|+.+.+ .++|||+.+...++.+.+++ +..|+. .+
T Consensus 55 ~~~~~~~~~~~~~vLDiGcG~--------G~~~~~l~~~~~-----~~v~gvd~s~~~~~~a~~~~----~~~~~~~~~~ 117 (287)
T 1kpg_A 55 LALGKLGLQPGMTLLDVGCGW--------GATMMRAVEKYD-----VNVVGLTLSKNQANHVQQLV----ANSENLRSKR 117 (287)
T ss_dssp HHHTTTTCCTTCEEEEETCTT--------SHHHHHHHHHHC-----CEEEEEESCHHHHHHHHHHH----HTCCCCSCEE
T ss_pred HHHHHcCCCCcCEEEEECCcc--------cHHHHHHHHHcC-----CEEEEEECCHHHHHHHHHHH----HhcCCCCCeE
Confidence 345555444556899999643 235555664432 29999999887777666554 344543 44
Q ss_pred EEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcE-EEEEee
Q 040125 322 FSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKV-LVLVEQ 384 (514)
Q Consensus 322 F~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkV-vvlvE~ 384 (514)
|.. ..++++. ..=++|+. ...|||+..+ ....+|+.+ +-|+|.- +++.+.
T Consensus 118 ~~~--~d~~~~~------~~fD~v~~--~~~l~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~ 169 (287)
T 1kpg_A 118 VLL--AGWEQFD------EPVDRIVS--IGAFEHFGHE---RYDAFFSLAHRLLPADGVMLLHTI 169 (287)
T ss_dssp EEE--SCGGGCC------CCCSEEEE--ESCGGGTCTT---THHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEE--CChhhCC------CCeeEEEE--eCchhhcChH---HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 432 2333332 12234443 3456887532 234555555 6689984 444443
No 41
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=86.51 E-value=24 Score=34.05 Aligned_cols=140 Identities=15% Similarity=0.181 Sum_probs=74.0
Q ss_pred HHHHhhCCCccchhHhhhHHHHhh----hcCC-ceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCCh
Q 040125 225 RLVYEICPHIQFGHFVANSSILEA----FEGE-SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCV 299 (514)
Q Consensus 225 ~~f~e~sP~~kfahftANqAILEA----~~g~-~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~ 299 (514)
+.+.++.|-+. .....|+.+++. +... ..-+|+|+|-|.. ..| .+. +.++.+. | ..|||+|+.+.
T Consensus 45 ~~~~~~~p~~~-~~a~~~~~~~~~~~~~l~~~~~~~~vLDlGcG~p-t~G-~~~---~~~~~~~---p-~~~v~~vD~sp 114 (274)
T 2qe6_A 45 DYACKHIPGLK-ESAIENRKVLVRGVRFLAGEAGISQFLDLGSGLP-TVQ-NTH---EVAQSVN---P-DARVVYVDIDP 114 (274)
T ss_dssp HHHHHHSTTHH-HHHHHHHHHHHHHHHHHHTTTCCCEEEEETCCSC-CSS-CHH---HHHHHHC---T-TCEEEEEESSH
T ss_pred HHHHHhcchhH-HHHHHHhHHHHHHHHHHhhccCCCEEEEECCCCC-CCC-hHH---HHHHHhC---C-CCEEEEEECCh
Confidence 34455556443 233455555543 3322 2348999996420 003 232 3333321 3 37999999987
Q ss_pred hHHHHHHHHHHHHHHhcCCceEEEeecCCccccCc--------ccccccCCcEEEEEeccccccccccccchHHHHHHHH
Q 040125 300 EKFQSIGDELKDYAKTYGINLEFSVVESNLENLQT--------KDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII 371 (514)
Q Consensus 300 ~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~~--------~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I 371 (514)
..++...+++.. .-..+|..- .+.+... +. +..+...+|-+..-||++.++ ....+|+.+
T Consensus 115 ~~l~~Ar~~~~~-----~~~v~~~~~--D~~~~~~~~~~~~~~~~--~d~~~~d~v~~~~vlh~~~d~---~~~~~l~~~ 182 (274)
T 2qe6_A 115 MVLTHGRALLAK-----DPNTAVFTA--DVRDPEYILNHPDVRRM--IDFSRPAAIMLVGMLHYLSPD---VVDRVVGAY 182 (274)
T ss_dssp HHHHHHHHHHTT-----CTTEEEEEC--CTTCHHHHHHSHHHHHH--CCTTSCCEEEETTTGGGSCTT---THHHHHHHH
T ss_pred HHHHHHHHhcCC-----CCCeEEEEe--eCCCchhhhccchhhcc--CCCCCCEEEEEechhhhCCcH---HHHHHHHHH
Confidence 777776666521 113445432 2322110 01 112345666677788999764 245677777
Q ss_pred Hh-cCCc-EEEEEeecC
Q 040125 372 HE-LSPK-VLVLVEQDS 386 (514)
Q Consensus 372 r~-L~Pk-VvvlvE~ea 386 (514)
++ |+|. .+++.+...
T Consensus 183 ~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 183 RDALAPGSYLFMTSLVD 199 (274)
T ss_dssp HHHSCTTCEEEEEEEBC
T ss_pred HHhCCCCcEEEEEEecC
Confidence 65 9997 455555443
No 42
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=86.18 E-value=9.7 Score=36.27 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=64.7
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEE
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEF 322 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF 322 (514)
+.+++.+...+.-+|+|+|-|. |. +...|+.+ | .++|||+.+...++.+.++ ++..|+..+|
T Consensus 110 ~~~~~~~~~~~~~~vLD~GcG~----G~----~~~~l~~~-g-----~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~ 171 (286)
T 3m70_A 110 GDVVDAAKIISPCKVLDLGCGQ----GR----NSLYLSLL-G-----YDVTSWDHNENSIAFLNET----KEKENLNIST 171 (286)
T ss_dssp HHHHHHHHHSCSCEEEEESCTT----CH----HHHHHHHT-T-----CEEEEEESCHHHHHHHHHH----HHHTTCCEEE
T ss_pred HHHHHHhhccCCCcEEEECCCC----CH----HHHHHHHC-C-----CeEEEEECCHHHHHHHHHH----HHHcCCceEE
Confidence 4566666555677899999753 32 44456665 2 4899999988777666655 3445666555
Q ss_pred EeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 040125 323 SVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLV 382 (514)
Q Consensus 323 ~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlv 382 (514)
.. ..+.++.. ++..=+|-+...+||+..+ ....+|+.+ +.|+|.-++++
T Consensus 172 ~~--~d~~~~~~------~~~fD~i~~~~~~~~~~~~---~~~~~l~~~~~~LkpgG~l~i 221 (286)
T 3m70_A 172 AL--YDINAANI------QENYDFIVSTVVFMFLNRE---RVPSIIKNMKEHTNVGGYNLI 221 (286)
T ss_dssp EE--CCGGGCCC------CSCEEEEEECSSGGGSCGG---GHHHHHHHHHHTEEEEEEEEE
T ss_pred EE--eccccccc------cCCccEEEEccchhhCCHH---HHHHHHHHHHHhcCCCcEEEE
Confidence 44 23333321 2322223334456887432 345666665 66899855333
No 43
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=85.24 E-value=2.9 Score=39.85 Aligned_cols=101 Identities=13% Similarity=0.170 Sum_probs=62.7
Q ss_pred EEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccCcc
Q 040125 256 HVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQTK 335 (514)
Q Consensus 256 HIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~~~ 335 (514)
+|+|+|. .|-+|--.++.+ .| ..++++++-+...++-+.++ |+..|+...+.... ..+
T Consensus 52 ~VLDlGC--------G~GplAl~l~~~---~p-~a~~~A~Di~~~~leiar~~----~~~~g~~~~v~~~d--~~~---- 109 (200)
T 3fzg_A 52 SILDFGC--------GFNPLALYQWNE---NE-KIIYHAYDIDRAEIAFLSSI----IGKLKTTIKYRFLN--KES---- 109 (200)
T ss_dssp EEEEETC--------TTHHHHHHHHCS---SC-CCEEEEECSCHHHHHHHHHH----HHHSCCSSEEEEEC--CHH----
T ss_pred eEEEecC--------CCCHHHHHHHhc---CC-CCEEEEEeCCHHHHHHHHHH----HHhcCCCccEEEec--ccc----
Confidence 7899984 456666666654 34 46999999988777777665 56778775444321 110
Q ss_pred cccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEee
Q 040125 336 DIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLVEQ 384 (514)
Q Consensus 336 ~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkVvvlvE~ 384 (514)
...++..=+|=...-||+| ++..+ ...+.++.|+|..+++.=+
T Consensus 110 --~~~~~~~DvVLa~k~LHlL-~~~~~---al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 110 --DVYKGTYDVVFLLKMLPVL-KQQDV---NILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp --HHTTSEEEEEEEETCHHHH-HHTTC---CHHHHHHTCEEEEEEEEEE
T ss_pred --cCCCCCcChhhHhhHHHhh-hhhHH---HHHHHHHHhCCCCEEEEeC
Confidence 1122222222233356888 65443 3558889999998888754
No 44
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=84.66 E-value=12 Score=35.55 Aligned_cols=106 Identities=20% Similarity=0.273 Sum_probs=58.1
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEE
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEF 322 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF 322 (514)
+.+++.+.-...-.|+|+|.|. |. +...|+. + ..++|||+.+...++...+++ -++ +|
T Consensus 47 ~~l~~~l~~~~~~~vLDiGcG~----G~----~~~~l~~-~-----~~~v~gvD~s~~~~~~a~~~~------~~~--~~ 104 (279)
T 3ccf_A 47 EDLLQLLNPQPGEFILDLGCGT----GQ----LTEKIAQ-S-----GAEVLGTDNAATMIEKARQNY------PHL--HF 104 (279)
T ss_dssp CHHHHHHCCCTTCEEEEETCTT----SH----HHHHHHH-T-----TCEEEEEESCHHHHHHHHHHC------TTS--CE
T ss_pred HHHHHHhCCCCCCEEEEecCCC----CH----HHHHHHh-C-----CCeEEEEECCHHHHHHHHhhC------CCC--EE
Confidence 3456666555556899999753 32 2334444 2 258999999877776655543 133 33
Q ss_pred EeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 040125 323 SVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 323 ~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE 383 (514)
.. ...+++. . ++..=+|-+...||++.+ ...+|+.+ +-|+|.-.+++.
T Consensus 105 ~~--~d~~~~~-----~-~~~fD~v~~~~~l~~~~d-----~~~~l~~~~~~LkpgG~l~~~ 153 (279)
T 3ccf_A 105 DV--ADARNFR-----V-DKPLDAVFSNAMLHWVKE-----PEAAIASIHQALKSGGRFVAE 153 (279)
T ss_dssp EE--CCTTTCC-----C-SSCEEEEEEESCGGGCSC-----HHHHHHHHHHHEEEEEEEEEE
T ss_pred EE--CChhhCC-----c-CCCcCEEEEcchhhhCcC-----HHHHHHHHHHhcCCCcEEEEE
Confidence 32 2233332 1 232223334556788753 23455544 678998555553
No 45
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=83.78 E-value=3.9 Score=37.14 Aligned_cols=109 Identities=16% Similarity=0.219 Sum_probs=60.4
Q ss_pred hHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceE
Q 040125 242 NSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLE 321 (514)
Q Consensus 242 NqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFe 321 (514)
-..+++.+.....-.|+|+|.|. | .+...|+.+ ..++|||+.+...++.+.+++. -+ .+
T Consensus 34 ~~~~l~~~~~~~~~~vLDiGcG~----G----~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~-----~~--~~ 92 (220)
T 3hnr_A 34 YEDILEDVVNKSFGNVLEFGVGT----G----NLTNKLLLA------GRTVYGIEPSREMRMIAKEKLP-----KE--FS 92 (220)
T ss_dssp HHHHHHHHHHTCCSEEEEECCTT----S----HHHHHHHHT------TCEEEEECSCHHHHHHHHHHSC-----TT--CC
T ss_pred HHHHHHHhhccCCCeEEEeCCCC----C----HHHHHHHhC------CCeEEEEeCCHHHHHHHHHhCC-----Cc--eE
Confidence 35667776655677999999753 3 345556665 1489999988776665555432 12 23
Q ss_pred EEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 040125 322 FSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLV 382 (514)
Q Consensus 322 F~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlv 382 (514)
|. ...++++.. . ..=++|+.+ ..|||+.+.. ...+|+.+ +.|+|.-.+++
T Consensus 93 ~~--~~d~~~~~~---~-~~fD~v~~~--~~l~~~~~~~---~~~~l~~~~~~LkpgG~l~i 143 (220)
T 3hnr_A 93 IT--EGDFLSFEV---P-TSIDTIVST--YAFHHLTDDE---KNVAIAKYSQLLNKGGKIVF 143 (220)
T ss_dssp EE--SCCSSSCCC---C-SCCSEEEEE--SCGGGSCHHH---HHHHHHHHHHHSCTTCEEEE
T ss_pred EE--eCChhhcCC---C-CCeEEEEEC--cchhcCChHH---HHHHHHHHHHhcCCCCEEEE
Confidence 32 222333321 1 222444444 4568876521 12355544 66899844443
No 46
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=83.76 E-value=8.1 Score=39.50 Aligned_cols=124 Identities=12% Similarity=0.082 Sum_probs=67.1
Q ss_pred hhhHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc
Q 040125 240 VANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN 319 (514)
Q Consensus 240 tANqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp 319 (514)
.....+++.+.....-+|+|+|.|.| .+...++.+. | ..++|+|+.+...++.+.+++...--.-.+.
T Consensus 209 ~~~~~ll~~l~~~~~~~VLDlGcG~G--------~~s~~la~~~---p-~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~ 276 (375)
T 4dcm_A 209 IGARFFMQHLPENLEGEIVDLGCGNG--------VIGLTLLDKN---P-QAKVVFVDESPMAVASSRLNVETNMPEALDR 276 (375)
T ss_dssp HHHHHHHHTCCCSCCSEEEEETCTTC--------HHHHHHHHHC---T-TCEEEEEESCHHHHHHHHHHHHHHCGGGGGG
T ss_pred HHHHHHHHhCcccCCCeEEEEeCcch--------HHHHHHHHHC---C-CCEEEEEECcHHHHHHHHHHHHHcCCCcCce
Confidence 34557888887666679999997543 3444455542 3 3799999998877777766654322111123
Q ss_pred eEEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 040125 320 LEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 320 FeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE 383 (514)
++|..- .+.+ .+.-..=+.|+.|-.| |+...........+++.+ +.|+|.-.+++.
T Consensus 277 v~~~~~--D~~~----~~~~~~fD~Ii~nppf--h~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv 333 (375)
T 4dcm_A 277 CEFMIN--NALS----GVEPFRFNAVLCNPPF--HQQHALTDNVAWEMFHHARRCLKINGELYIV 333 (375)
T ss_dssp EEEEEC--STTT----TCCTTCEEEEEECCCC---------CCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEec--hhhc----cCCCCCeeEEEECCCc--ccCcccCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 555442 1211 1111122567777666 542221122234566666 458998555553
No 47
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=83.57 E-value=18 Score=34.00 Aligned_cols=128 Identities=13% Similarity=0.081 Sum_probs=73.1
Q ss_pred HHhhCCCccchhHhhhHHHHhhhc-CCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHH
Q 040125 227 VYEICPHIQFGHFVANSSILEAFE-GESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSI 305 (514)
Q Consensus 227 f~e~sP~~kfahftANqAILEA~~-g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~et 305 (514)
.|+..+...-.+......+++.+. -...-+|+|+|.|. | .+...|+.+ | ..++|||+.+...++.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLDiGcG~----G----~~~~~la~~----~-~~~v~gvD~s~~~~~~a 85 (267)
T 3kkz_A 19 FFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGT----G----GQTMVLAGH----V-TGQVTGLDFLSGFIDIF 85 (267)
T ss_dssp HHHTSSCSSSCCHHHHHHHHTTCCCCCTTCEEEEETCTT----C----HHHHHHHTT----C-SSEEEEEESCHHHHHHH
T ss_pred HHhhccccCCCCHHHHHHHHHhcccCCCCCEEEEeCCCC----C----HHHHHHHhc----c-CCEEEEEeCCHHHHHHH
Confidence 445555444444444555666665 23456899999643 2 455567765 2 36999999988777766
Q ss_pred HHHHHHHHHhcCCc--eEEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEE-E
Q 040125 306 GDELKDYAKTYGIN--LEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLV-L 381 (514)
Q Consensus 306 g~rL~~fA~~lgvp--FeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvv-l 381 (514)
.+++ +..|++ .+|.. ..++++. ..++..=+|-|...+||+ + ...+|+.+ +-|+|.-.+ +
T Consensus 86 ~~~~----~~~~~~~~v~~~~--~d~~~~~-----~~~~~fD~i~~~~~~~~~-~-----~~~~l~~~~~~LkpgG~l~~ 148 (267)
T 3kkz_A 86 NRNA----RQSGLQNRVTGIV--GSMDDLP-----FRNEELDLIWSEGAIYNI-G-----FERGLNEWRKYLKKGGYLAV 148 (267)
T ss_dssp HHHH----HHTTCTTTEEEEE--CCTTSCC-----CCTTCEEEEEESSCGGGT-C-----HHHHHHHHGGGEEEEEEEEE
T ss_pred HHHH----HHcCCCcCcEEEE--cChhhCC-----CCCCCEEEEEEcCCceec-C-----HHHHHHHHHHHcCCCCEEEE
Confidence 6554 455665 55543 2233332 223433344455566887 2 24555555 568998444 4
Q ss_pred Eee
Q 040125 382 VEQ 384 (514)
Q Consensus 382 vE~ 384 (514)
.+.
T Consensus 149 ~~~ 151 (267)
T 3kkz_A 149 SEC 151 (267)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
No 48
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=83.10 E-value=3.4 Score=37.77 Aligned_cols=116 Identities=19% Similarity=0.141 Sum_probs=63.5
Q ss_pred HHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCC-ceEEE
Q 040125 245 ILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGI-NLEFS 323 (514)
Q Consensus 245 ILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgv-pFeF~ 323 (514)
.++.+.....-+|+|+|.|. | .+...|+.+. | ..++|||+.+...++.+.++..+-++..++ .++|.
T Consensus 19 ~~~~l~~~~~~~vLDiGcG~----G----~~~~~la~~~---p-~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~ 86 (218)
T 3mq2_A 19 EFEQLRSQYDDVVLDVGTGD----G----KHPYKVARQN---P-SRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYL 86 (218)
T ss_dssp HHHHHHTTSSEEEEEESCTT----C----HHHHHHHHHC---T-TEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEE
T ss_pred HHHHhhccCCCEEEEecCCC----C----HHHHHHHHHC---C-CCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEE
Confidence 34444455667899999753 3 3344455542 3 489999999887777666655555555666 35554
Q ss_pred eecCCccccCcccccccCCcEEEEEecc-cc--ccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 040125 324 VVESNLENLQTKDIKVLENEVLVVNSIL-QL--HCVVKESRGALNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 324 ~V~~~lE~l~~~~l~~~~~EaLaVN~~~-~L--h~l~~es~~~~~~~L~~I-r~L~PkVvvlvE 383 (514)
. ..++++... -.. +.+.++..+ .+ ||+.+ . ..+|+.+ +-|+|.-.+++.
T Consensus 87 ~--~d~~~l~~~---~~~-d~v~~~~~~~~~~~~~~~~-~----~~~l~~~~~~LkpgG~l~~~ 139 (218)
T 3mq2_A 87 W--ATAERLPPL---SGV-GELHVLMPWGSLLRGVLGS-S----PEMLRGMAAVCRPGASFLVA 139 (218)
T ss_dssp E--CCSTTCCSC---CCE-EEEEEESCCHHHHHHHHTS-S----SHHHHHHHHTEEEEEEEEEE
T ss_pred e--cchhhCCCC---CCC-CEEEEEccchhhhhhhhcc-H----HHHHHHHHHHcCCCcEEEEE
Confidence 3 334443321 111 333333322 22 24332 2 2455555 668998666663
No 49
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=82.83 E-value=20 Score=34.66 Aligned_cols=105 Identities=10% Similarity=0.035 Sum_probs=58.4
Q ss_pred ceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc--eEEEeecCCcc
Q 040125 253 SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN--LEFSVVESNLE 330 (514)
Q Consensus 253 ~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp--FeF~~V~~~lE 330 (514)
..-+|+|+|.|. | .+...|+.+. .| ..++|||+.+...++.+.++ ++..|++ .+|.. ..+.
T Consensus 118 ~~~~vLDiGcG~----G----~~~~~la~~~--~~-~~~v~gvD~s~~~~~~a~~~----~~~~~~~~~v~~~~--~d~~ 180 (305)
T 3ocj_A 118 PGCVVASVPCGW----M----SELLALDYSA--CP-GVQLVGIDYDPEALDGATRL----AAGHALAGQITLHR--QDAW 180 (305)
T ss_dssp TTCEEEETTCTT----C----HHHHTSCCTT--CT-TCEEEEEESCHHHHHHHHHH----HTTSTTGGGEEEEE--CCGG
T ss_pred CCCEEEEecCCC----C----HHHHHHHHhc--CC-CCeEEEEECCHHHHHHHHHH----HHhcCCCCceEEEE--Cchh
Confidence 345799999653 3 2334444221 23 47999999988777666555 3455665 55543 2333
Q ss_pred ccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 040125 331 NLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLV 382 (514)
Q Consensus 331 ~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlv 382 (514)
++. .. +..=+|-+..-+||+.+.. ....+|+.+ +.|+|.-.+++
T Consensus 181 ~~~-----~~-~~fD~v~~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i 225 (305)
T 3ocj_A 181 KLD-----TR-EGYDLLTSNGLNIYEPDDA--RVTELYRRFWQALKPGGALVT 225 (305)
T ss_dssp GCC-----CC-SCEEEEECCSSGGGCCCHH--HHHHHHHHHHHHEEEEEEEEE
T ss_pred cCC-----cc-CCeEEEEECChhhhcCCHH--HHHHHHHHHHHhcCCCeEEEE
Confidence 332 11 3222333445568775421 223466665 56999866665
No 50
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=82.62 E-value=14 Score=34.36 Aligned_cols=111 Identities=14% Similarity=0.181 Sum_probs=63.7
Q ss_pred hHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceE
Q 040125 242 NSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLE 321 (514)
Q Consensus 242 NqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFe 321 (514)
-+.|++.+...+.-.|+|+|.|. | .+...|+.+ + + . ++|||+.+...++.+.+++. +-..+
T Consensus 33 ~~~l~~~~~~~~~~~vLD~GcG~----G----~~~~~l~~~--~-~-~-~v~~vD~s~~~~~~a~~~~~------~~~~~ 93 (253)
T 3g5l_A 33 WHELKKMLPDFNQKTVLDLGCGF----G----WHCIYAAEH--G-A-K-KVLGIDLSERMLTEAKRKTT------SPVVC 93 (253)
T ss_dssp HHHHHTTCCCCTTCEEEEETCTT----C----HHHHHHHHT--T-C-S-EEEEEESCHHHHHHHHHHCC------CTTEE
T ss_pred HHHHHHhhhccCCCEEEEECCCC----C----HHHHHHHHc--C-C-C-EEEEEECCHHHHHHHHHhhc------cCCeE
Confidence 44566666655677899999643 3 244556655 2 2 2 89999988777766555433 23444
Q ss_pred EEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 040125 322 FSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 322 F~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE 383 (514)
|... .++++. ..++..=+|-|...|||+.+ ...+|+.+ +-|+|.-.+++.
T Consensus 94 ~~~~--d~~~~~-----~~~~~fD~v~~~~~l~~~~~-----~~~~l~~~~~~LkpgG~l~~~ 144 (253)
T 3g5l_A 94 YEQK--AIEDIA-----IEPDAYNVVLSSLALHYIAS-----FDDICKKVYINLKSSGSFIFS 144 (253)
T ss_dssp EEEC--CGGGCC-----CCTTCEEEEEEESCGGGCSC-----HHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEc--chhhCC-----CCCCCeEEEEEchhhhhhhh-----HHHHHHHHHHHcCCCcEEEEE
Confidence 4432 233322 22343334444556788732 34566665 558998655553
No 51
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=82.19 E-value=3.1 Score=38.67 Aligned_cols=94 Identities=13% Similarity=0.202 Sum_probs=49.6
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccC
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQ 333 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~ 333 (514)
.-+|+|+|.|.| .+...|+.+ + .++|||+.+...++.+.++ ++|.. ...+++.
T Consensus 42 ~~~vLDiGcG~G--------~~~~~l~~~-~-----~~v~gvD~s~~~~~~a~~~-----------~~~~~--~d~~~~~ 94 (240)
T 3dli_A 42 CRRVLDIGCGRG--------EFLELCKEE-G-----IESIGVDINEDMIKFCEGK-----------FNVVK--SDAIEYL 94 (240)
T ss_dssp CSCEEEETCTTT--------HHHHHHHHH-T-----CCEEEECSCHHHHHHHHTT-----------SEEEC--SCHHHHH
T ss_pred CCeEEEEeCCCC--------HHHHHHHhC-C-----CcEEEEECCHHHHHHHHhh-----------cceee--ccHHHHh
Confidence 358999996432 344566665 2 3689999887666554443 33322 2222210
Q ss_pred cccccccCC--cEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 040125 334 TKDIKVLEN--EVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLV 382 (514)
Q Consensus 334 ~~~l~~~~~--EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlv 382 (514)
. ...++ ++|+ |...|||+.++ ....+|+.+ +.|+|.-.+++
T Consensus 95 -~--~~~~~~fD~i~--~~~~l~~~~~~---~~~~~l~~~~~~LkpgG~l~~ 138 (240)
T 3dli_A 95 -K--SLPDKYLDGVM--ISHFVEHLDPE---RLFELLSLCYSKMKYSSYIVI 138 (240)
T ss_dssp -H--TSCTTCBSEEE--EESCGGGSCGG---GHHHHHHHHHHHBCTTCCEEE
T ss_pred -h--hcCCCCeeEEE--ECCchhhCCcH---HHHHHHHHHHHHcCCCcEEEE
Confidence 0 11222 3444 34566887642 245566655 67899744333
No 52
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=81.94 E-value=8.7 Score=36.75 Aligned_cols=115 Identities=13% Similarity=0.132 Sum_probs=64.3
Q ss_pred HHHHhhh----cCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCC
Q 040125 243 SSILEAF----EGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGI 318 (514)
Q Consensus 243 qAILEA~----~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgv 318 (514)
..|++.+ .-...-+|+|+|.|. |. +...|+.+.+ .++|||+.+...++.+.+++. ..|+
T Consensus 68 ~~l~~~l~~~~~~~~~~~vLDiGcG~----G~----~~~~l~~~~~-----~~v~gvD~s~~~~~~a~~~~~----~~~~ 130 (297)
T 2o57_A 68 EWLASELAMTGVLQRQAKGLDLGAGY----GG----AARFLVRKFG-----VSIDCLNIAPVQNKRNEEYNN----QAGL 130 (297)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTT----SH----HHHHHHHHHC-----CEEEEEESCHHHHHHHHHHHH----HHTC
T ss_pred HHHHHHhhhccCCCCCCEEEEeCCCC----CH----HHHHHHHHhC-----CEEEEEeCCHHHHHHHHHHHH----hcCC
Confidence 4455555 334456899999643 32 3334554432 389999998877776666543 3344
Q ss_pred c--eEEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCc-EEEEEeecC
Q 040125 319 N--LEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPK-VLVLVEQDS 386 (514)
Q Consensus 319 p--FeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pk-VvvlvE~ea 386 (514)
+ ++|.. ..++++ ...++..=+|-+...|||+.+ ...+|+.+ +-|+|. .+++++...
T Consensus 131 ~~~~~~~~--~d~~~~-----~~~~~~fD~v~~~~~l~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~ 190 (297)
T 2o57_A 131 ADNITVKY--GSFLEI-----PCEDNSYDFIWSQDAFLHSPD-----KLKVFQECARVLKPRGVMAITDPMK 190 (297)
T ss_dssp TTTEEEEE--CCTTSC-----SSCTTCEEEEEEESCGGGCSC-----HHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred CcceEEEE--cCcccC-----CCCCCCEeEEEecchhhhcCC-----HHHHHHHHHHHcCCCeEEEEEEecc
Confidence 3 55543 223332 223343444555667788754 24555554 668997 444555443
No 53
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=81.82 E-value=7.2 Score=39.23 Aligned_cols=107 Identities=20% Similarity=0.229 Sum_probs=56.6
Q ss_pred HHHHhhhc-CCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceE
Q 040125 243 SSILEAFE-GESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLE 321 (514)
Q Consensus 243 qAILEA~~-g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFe 321 (514)
..|++.+. -.+.-+|+|+|-+. | .+...|+.+- | .+++|+++. ...++ .|+... ..+
T Consensus 198 ~~l~~~~~~~~~~~~vLDvG~G~----G----~~~~~l~~~~---~-~~~~~~~D~-~~~~~--------~a~~~~-~v~ 255 (372)
T 1fp1_D 198 KRMLEIYTGFEGISTLVDVGGGS----G----RNLELIISKY---P-LIKGINFDL-PQVIE--------NAPPLS-GIE 255 (372)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTT----S----HHHHHHHHHC---T-TCEEEEEEC-HHHHT--------TCCCCT-TEE
T ss_pred HHHHHHhhccCCCCEEEEeCCCC----c----HHHHHHHHHC---C-CCeEEEeCh-HHHHH--------hhhhcC-CCE
Confidence 56777765 23457899999653 3 2445566553 3 589999986 33332 222221 244
Q ss_pred EEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcE-EEEEee
Q 040125 322 FSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKV-LVLVEQ 384 (514)
Q Consensus 322 F~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkV-vvlvE~ 384 (514)
|..- .+.+ .+ ...++ |-+...||++.++ ....+|+.+ +.|+|.- ++++|.
T Consensus 256 ~~~~--d~~~----~~--~~~D~--v~~~~~lh~~~d~---~~~~~l~~~~~~L~pgG~l~i~e~ 307 (372)
T 1fp1_D 256 HVGG--DMFA----SV--PQGDA--MILKAVCHNWSDE---KCIEFLSNCHKALSPNGKVIIVEF 307 (372)
T ss_dssp EEEC--CTTT----CC--CCEEE--EEEESSGGGSCHH---HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEeC--Cccc----CC--CCCCE--EEEecccccCCHH---HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 4332 2221 11 11233 3355567887653 123566665 5689974 445554
No 54
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=80.82 E-value=16 Score=33.74 Aligned_cols=114 Identities=12% Similarity=0.189 Sum_probs=63.4
Q ss_pred hhHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc-
Q 040125 241 ANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN- 319 (514)
Q Consensus 241 ANqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp- 319 (514)
.-..|++.+.-...-+|+|+|.|. |. +...|+.+.+ .++|||+.+...++...++ ++..|++
T Consensus 24 ~~~~l~~~~~~~~~~~VLDiGcG~----G~----~~~~la~~~~-----~~v~gvD~s~~~l~~a~~~----~~~~~~~~ 86 (256)
T 1nkv_A 24 KYATLGRVLRMKPGTRILDLGSGS----GE----MLCTWARDHG-----ITGTGIDMSSLFTAQAKRR----AEELGVSE 86 (256)
T ss_dssp HHHHHHHHTCCCTTCEEEEETCTT----CH----HHHHHHHHTC-----CEEEEEESCHHHHHHHHHH----HHHTTCTT
T ss_pred HHHHHHHhcCCCCCCEEEEECCCC----CH----HHHHHHHhcC-----CeEEEEeCCHHHHHHHHHH----HHhcCCCc
Confidence 344555555544556899999753 33 3345555432 3789999988777766554 3445654
Q ss_pred -eEEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEE-EEee
Q 040125 320 -LEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLV-LVEQ 384 (514)
Q Consensus 320 -FeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvv-lvE~ 384 (514)
.+|.. ..++++.+ ++..=+|-|...+||+.+ ...+|+.+ +-|+|.-.+ +++.
T Consensus 87 ~v~~~~--~d~~~~~~------~~~fD~V~~~~~~~~~~~-----~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 87 RVHFIH--NDAAGYVA------NEKCDVAACVGATWIAGG-----FAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp TEEEEE--SCCTTCCC------SSCEEEEEEESCGGGTSS-----SHHHHHHHTTSEEEEEEEEEEEE
T ss_pred ceEEEE--CChHhCCc------CCCCCEEEECCChHhcCC-----HHHHHHHHHHHcCCCeEEEEecC
Confidence 66644 22333321 222223334556677653 23555555 568998444 4443
No 55
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=80.77 E-value=11 Score=36.44 Aligned_cols=112 Identities=10% Similarity=0.137 Sum_probs=62.2
Q ss_pred HHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc--eE
Q 040125 244 SILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN--LE 321 (514)
Q Consensus 244 AILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp--Fe 321 (514)
.|++.+.-...-+|+|+|.|. | .+...|+.+.| .++|||+.+...++...+++ +..|++ .+
T Consensus 81 ~~~~~~~~~~~~~vLDiGcG~----G----~~~~~la~~~~-----~~v~gvD~s~~~~~~a~~~~----~~~~~~~~v~ 143 (318)
T 2fk8_A 81 LNLDKLDLKPGMTLLDIGCGW----G----TTMRRAVERFD-----VNVIGLTLSKNQHARCEQVL----ASIDTNRSRQ 143 (318)
T ss_dssp HHHTTSCCCTTCEEEEESCTT----S----HHHHHHHHHHC-----CEEEEEESCHHHHHHHHHHH----HTSCCSSCEE
T ss_pred HHHHhcCCCCcCEEEEEcccc----h----HHHHHHHHHCC-----CEEEEEECCHHHHHHHHHHH----HhcCCCCceE
Confidence 455555545566899999643 2 34445555432 38999999887776665553 344553 44
Q ss_pred EEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcE-EEEEeec
Q 040125 322 FSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKV-LVLVEQD 385 (514)
Q Consensus 322 F~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkV-vvlvE~e 385 (514)
|.. ..++++. ..=++|+.+ ..|||+..+ ....+|+.+ +-|+|.- +++.+..
T Consensus 144 ~~~--~d~~~~~------~~fD~v~~~--~~l~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~ 196 (318)
T 2fk8_A 144 VLL--QGWEDFA------EPVDRIVSI--EAFEHFGHE---NYDDFFKRCFNIMPADGRMTVQSSV 196 (318)
T ss_dssp EEE--SCGGGCC------CCCSEEEEE--SCGGGTCGG---GHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred EEE--CChHHCC------CCcCEEEEe--ChHHhcCHH---HHHHHHHHHHHhcCCCcEEEEEEec
Confidence 432 3333332 112344443 456887532 234556555 6689984 4444443
No 56
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=80.73 E-value=11 Score=37.13 Aligned_cols=101 Identities=12% Similarity=0.131 Sum_probs=62.5
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccC
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQ 333 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~ 333 (514)
--.|+|+|-|.| .|--.+. | ..+++|++-+...++...+ ++...|+++.|........
T Consensus 106 p~~VLDlGCG~g--------pLal~~~------~-~~~y~a~DId~~~i~~ar~----~~~~~g~~~~~~v~D~~~~--- 163 (253)
T 3frh_A 106 PRRVLDIACGLN--------PLALYER------G-IASVWGCDIHQGLGDVITP----FAREKDWDFTFALQDVLCA--- 163 (253)
T ss_dssp CSEEEEETCTTT--------HHHHHHT------T-CSEEEEEESBHHHHHHHHH----HHHHTTCEEEEEECCTTTS---
T ss_pred CCeEEEecCCcc--------HHHHHhc------c-CCeEEEEeCCHHHHHHHHH----HHHhcCCCceEEEeecccC---
Confidence 348999998654 1222222 3 4899999987766655444 4667789998876432111
Q ss_pred cccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEee
Q 040125 334 TKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLVEQ 384 (514)
Q Consensus 334 ~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkVvvlvE~ 384 (514)
.+. .+.+++.++-. +|+|-++.++ ..++.+..|+|..||+.=+
T Consensus 164 --~~~-~~~DvvLllk~--lh~LE~q~~~---~~~~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 164 --PPA-EAGDLALIFKL--LPLLEREQAG---SAMALLQSLNTPRMAVSFP 206 (253)
T ss_dssp --CCC-CBCSEEEEESC--HHHHHHHSTT---HHHHHHHHCBCSEEEEEEE
T ss_pred --CCC-CCcchHHHHHH--HHHhhhhchh---hHHHHHHHhcCCCEEEEcC
Confidence 111 24556656544 4887665544 4457778999998877654
No 57
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=79.10 E-value=18 Score=35.06 Aligned_cols=114 Identities=12% Similarity=0.116 Sum_probs=59.7
Q ss_pred ceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHh----cCCceEEEeecCC
Q 040125 253 SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKT----YGINLEFSVVESN 328 (514)
Q Consensus 253 ~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~----lgvpFeF~~V~~~ 328 (514)
+.-+|+|+|.|. |. +...|+.++ .-++|+|+.+...++...+++...... ....++|.. ..
T Consensus 34 ~~~~VLDlGcG~----G~----~~~~l~~~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~--~D 98 (313)
T 3bgv_A 34 RDITVLDLGCGK----GG----DLLKWKKGR-----INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFIT--AD 98 (313)
T ss_dssp -CCEEEEETCTT----TT----THHHHHHTT-----CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEE--CC
T ss_pred CCCEEEEECCCC----cH----HHHHHHhcC-----CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEE--ec
Confidence 456899999753 32 233444432 258999999988888777776543211 112344433 33
Q ss_pred ccccCc-ccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 040125 329 LENLQT-KDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLV 382 (514)
Q Consensus 329 lE~l~~-~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlv 382 (514)
++++.. +.+.-.++..=+|-|.+.||++..+. .....+|+.+ +.|+|.-++++
T Consensus 99 ~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~-~~~~~~l~~~~~~LkpgG~li~ 153 (313)
T 3bgv_A 99 SSKELLIDKFRDPQMCFDICSCQFVCHYSFESY-EQADMMLRNACERLSPGGYFIG 153 (313)
T ss_dssp TTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSH-HHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccccchhhhcccCCCCEEEEEEecchhhccCCH-HHHHHHHHHHHHHhCCCcEEEE
Confidence 333321 01111122233344556778873211 2234666666 56899855554
No 58
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=78.93 E-value=33 Score=30.05 Aligned_cols=113 Identities=19% Similarity=0.193 Sum_probs=62.5
Q ss_pred hHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCC-ce
Q 040125 242 NSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGI-NL 320 (514)
Q Consensus 242 NqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgv-pF 320 (514)
++.+++.+...+.-+|+|+|.|. |. +...|+.+ + .++|+|+.+...++.+.+++.+ .++ ..
T Consensus 21 ~~~l~~~~~~~~~~~vLdiG~G~----G~----~~~~l~~~-~-----~~v~~vD~s~~~~~~a~~~~~~----~~~~~~ 82 (199)
T 2xvm_A 21 HSEVLEAVKVVKPGKTLDLGCGN----GR----NSLYLAAN-G-----YDVDAWDKNAMSIANVERIKSI----ENLDNL 82 (199)
T ss_dssp CHHHHHHTTTSCSCEEEEETCTT----SH----HHHHHHHT-T-----CEEEEEESCHHHHHHHHHHHHH----HTCTTE
T ss_pred cHHHHHHhhccCCCeEEEEcCCC----CH----HHHHHHHC-C-----CeEEEEECCHHHHHHHHHHHHh----CCCCCc
Confidence 34666666654555999999753 32 34456654 2 4899999888777766655433 344 34
Q ss_pred EEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEE-EEEe
Q 040125 321 EFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVL-VLVE 383 (514)
Q Consensus 321 eF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVv-vlvE 383 (514)
+|.. ..+.++. . ++..=+|-+...+||+..+ ....+|+.+ +.|+|.-. ++++
T Consensus 83 ~~~~--~d~~~~~-----~-~~~~D~v~~~~~l~~~~~~---~~~~~l~~~~~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 83 HTRV--VDLNNLT-----F-DRQYDFILSTVVLMFLEAK---TIPGLIANMQRCTKPGGYNLIVA 136 (199)
T ss_dssp EEEE--CCGGGCC-----C-CCCEEEEEEESCGGGSCGG---GHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEE--cchhhCC-----C-CCCceEEEEcchhhhCCHH---HHHHHHHHHHHhcCCCeEEEEEE
Confidence 5543 2233322 1 2222222233456877532 235566655 66899855 3443
No 59
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=78.51 E-value=27 Score=31.42 Aligned_cols=111 Identities=10% Similarity=0.177 Sum_probs=63.0
Q ss_pred HHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEE
Q 040125 244 SILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFS 323 (514)
Q Consensus 244 AILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~ 323 (514)
.+.+.+.....-+|+|+|.|. | .+...|+.+ .-++|||+.+...++.+.+++.+ .+ .++|.
T Consensus 42 ~l~~~~~~~~~~~vLDiGcG~----G----~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~----~~-~~~~~ 102 (216)
T 3ofk_A 42 LLRLSLSSGAVSNGLEIGCAA----G----AFTEKLAPH------CKRLTVIDVMPRAIGRACQRTKR----WS-HISWA 102 (216)
T ss_dssp HHHHHTTTSSEEEEEEECCTT----S----HHHHHHGGG------EEEEEEEESCHHHHHHHHHHTTT----CS-SEEEE
T ss_pred HHHHHcccCCCCcEEEEcCCC----C----HHHHHHHHc------CCEEEEEECCHHHHHHHHHhccc----CC-CeEEE
Confidence 344445556678999999753 3 344556654 14899999988777776665432 22 44443
Q ss_pred eecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 040125 324 VVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 324 ~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE 383 (514)
. ..++++. .++..=+|-|...|||+.+. .....+|+.+ +.|+|.-++++.
T Consensus 103 ~--~d~~~~~------~~~~fD~v~~~~~l~~~~~~--~~~~~~l~~~~~~L~pgG~l~~~ 153 (216)
T 3ofk_A 103 A--TDILQFS------TAELFDLIVVAEVLYYLEDM--TQMRTAIDNMVKMLAPGGHLVFG 153 (216)
T ss_dssp E--CCTTTCC------CSCCEEEEEEESCGGGSSSH--HHHHHHHHHHHHTEEEEEEEEEE
T ss_pred E--cchhhCC------CCCCccEEEEccHHHhCCCH--HHHHHHHHHHHHHcCCCCEEEEE
Confidence 3 2333332 12322234444667888642 1234455544 668998655553
No 60
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=77.53 E-value=9.7 Score=40.32 Aligned_cols=120 Identities=12% Similarity=0.161 Sum_probs=64.9
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHH---HHHhcCCc
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKD---YAKTYGIN 319 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~---fA~~lgvp 319 (514)
..|++.+.-...=+|+|+|-|.| .+.-.+|.+.+ .-+++||+.+...++.+.+++.+ .++..|+.
T Consensus 163 ~~il~~l~l~~gd~VLDLGCGtG--------~l~l~lA~~~g----~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~ 230 (438)
T 3uwp_A 163 AQMIDEIKMTDDDLFVDLGSGVG--------QVVLQVAAATN----CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK 230 (438)
T ss_dssp HHHHHHHCCCTTCEEEEESCTTS--------HHHHHHHHHCC----CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC
T ss_pred HHHHHhcCCCCCCEEEEeCCCCC--------HHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44666665445557999997543 23333444432 23899999887666555554433 45666762
Q ss_pred -eEEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEE
Q 040125 320 -LEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLV 382 (514)
Q Consensus 320 -FeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkVvvlv 382 (514)
-.+..+...+.++...+ .+..=.+|++|..+ +. +.....+....+.|+|.-.+++
T Consensus 231 ~~rVefi~GD~~~lp~~d-~~~~aDVVf~Nn~~--F~-----pdl~~aL~Ei~RvLKPGGrIVs 286 (438)
T 3uwp_A 231 HAEYTLERGDFLSEEWRE-RIANTSVIFVNNFA--FG-----PEVDHQLKERFANMKEGGRIVS 286 (438)
T ss_dssp CCEEEEEECCTTSHHHHH-HHHTCSEEEECCTT--CC-----HHHHHHHHHHHTTSCTTCEEEE
T ss_pred CCCeEEEECcccCCcccc-ccCCccEEEEcccc--cC-----chHHHHHHHHHHcCCCCcEEEE
Confidence 23333433343332211 11234577788654 21 1223456666788999854444
No 61
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=77.41 E-value=22 Score=33.75 Aligned_cols=109 Identities=20% Similarity=0.276 Sum_probs=60.7
Q ss_pred HHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc--eEE
Q 040125 245 ILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN--LEF 322 (514)
Q Consensus 245 ILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp--FeF 322 (514)
+++.+... .-+|+|+|.|. | .+...|+.+ + .++|||+.+...++.+.+++ +..|++ .+|
T Consensus 61 ~l~~~~~~-~~~vLDiGcG~----G----~~~~~l~~~-~-----~~v~gvD~s~~~~~~a~~~~----~~~~~~~~v~~ 121 (285)
T 4htf_A 61 VLAEMGPQ-KLRVLDAGGGE----G----QTAIKMAER-G-----HQVILCDLSAQMIDRAKQAA----EAKGVSDNMQF 121 (285)
T ss_dssp HHHHTCSS-CCEEEEETCTT----C----HHHHHHHHT-T-----CEEEEEESCHHHHHHHHHHH----HC-CCGGGEEE
T ss_pred HHHhcCCC-CCEEEEeCCcc----h----HHHHHHHHC-C-----CEEEEEECCHHHHHHHHHHH----HhcCCCcceEE
Confidence 44444433 57899999753 3 345556665 1 48999999887777666554 345653 444
Q ss_pred EeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 040125 323 SVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 323 ~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE 383 (514)
.. ..++++.+ ..++..=+|-|...|||+.+ ...+|+.+ +-|+|.-++++.
T Consensus 122 ~~--~d~~~~~~----~~~~~fD~v~~~~~l~~~~~-----~~~~l~~~~~~LkpgG~l~~~ 172 (285)
T 4htf_A 122 IH--CAAQDVAS----HLETPVDLILFHAVLEWVAD-----PRSVLQTLWSVLRPGGVLSLM 172 (285)
T ss_dssp EE--SCGGGTGG----GCSSCEEEEEEESCGGGCSC-----HHHHHHHHHHTEEEEEEEEEE
T ss_pred EE--cCHHHhhh----hcCCCceEEEECchhhcccC-----HHHHHHHHHHHcCCCeEEEEE
Confidence 33 33333321 12233333444556688753 23455555 668998555543
No 62
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=77.36 E-value=6.5 Score=37.52 Aligned_cols=123 Identities=14% Similarity=0.108 Sum_probs=64.5
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcC-CceE
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYG-INLE 321 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lg-vpFe 321 (514)
+.|++.+.....-+|+|+|.|. | . +...|+.+ | .++|||+.+...++.+.+++.+.....+ ..++
T Consensus 47 ~~l~~~l~~~~~~~vLDiGcG~----G-~---~~~~l~~~--~----~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~ 112 (293)
T 3thr_A 47 AWLLGLLRQHGCHRVLDVACGT----G-V---DSIMLVEE--G----FSVTSVDASDKMLKYALKERWNRRKEPAFDKWV 112 (293)
T ss_dssp HHHHHHHHHTTCCEEEETTCTT----S-H---HHHHHHHT--T----CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCE
T ss_pred HHHHHHhcccCCCEEEEecCCC----C-H---HHHHHHHC--C----CeEEEEECCHHHHHHHHHhhhhcccccccceee
Confidence 4455555544567899999753 3 2 33445554 2 2899999998878777666533221111 1233
Q ss_pred EEeecCCccccCcccccccCCcEEEEEec-ccccccccc--ccchHHHHHHHH-HhcCCcEEEEEe
Q 040125 322 FSVVESNLENLQTKDIKVLENEVLVVNSI-LQLHCVVKE--SRGALNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 322 F~~V~~~lE~l~~~~l~~~~~EaLaVN~~-~~Lh~l~~e--s~~~~~~~L~~I-r~L~PkVvvlvE 383 (514)
|.. ..+.++.. ++ ..++..=+|-|. ..|||+.+- .......+|+.+ +.|+|.-.+++.
T Consensus 113 ~~~--~d~~~~~~-~~-~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (293)
T 3thr_A 113 IEE--ANWLTLDK-DV-PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 174 (293)
T ss_dssp EEE--CCGGGHHH-HS-CCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred Eee--cChhhCcc-cc-ccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 322 22222211 11 223333344444 567888651 112245666666 558998555543
No 63
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=77.27 E-value=15 Score=32.69 Aligned_cols=110 Identities=12% Similarity=0.131 Sum_probs=60.8
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCC-ceEEEeecCCcccc
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGI-NLEFSVVESNLENL 332 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgv-pFeF~~V~~~lE~l 332 (514)
.-+|+|+|.|- | ..++ . ++.+. .-++|||+.+...++.+.+++. ..|+ ..+|.. ..+.++
T Consensus 45 ~~~vLDlgcG~----G--~~~~-~-~~~~~-----~~~v~~vD~~~~~~~~a~~~~~----~~~~~~v~~~~--~d~~~~ 105 (189)
T 3p9n_A 45 GLAVLDLYAGS----G--ALGL-E-ALSRG-----AASVLFVESDQRSAAVIARNIE----ALGLSGATLRR--GAVAAV 105 (189)
T ss_dssp TCEEEEETCTT----C--HHHH-H-HHHTT-----CSEEEEEECCHHHHHHHHHHHH----HHTCSCEEEEE--SCHHHH
T ss_pred CCEEEEeCCCc----C--HHHH-H-HHHCC-----CCeEEEEECCHHHHHHHHHHHH----HcCCCceEEEE--ccHHHH
Confidence 34799999643 2 2222 2 33332 2589999998877777666543 3454 344433 222222
Q ss_pred CcccccccCCcEEEEEeccccccccccccchHHHHHHHHHh---cCCcEEEEEeecCCCC
Q 040125 333 QTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHE---LSPKVLVLVEQDSSHN 389 (514)
Q Consensus 333 ~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~---L~PkVvvlvE~ea~~n 389 (514)
... +.-..=+.|+.|..+ |+.. .....+|..+++ |+|.-+++++.+....
T Consensus 106 ~~~-~~~~~fD~i~~~~p~--~~~~----~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~~ 158 (189)
T 3p9n_A 106 VAA-GTTSPVDLVLADPPY--NVDS----ADVDAILAALGTNGWTREGTVAVVERATTCA 158 (189)
T ss_dssp HHH-CCSSCCSEEEECCCT--TSCH----HHHHHHHHHHHHSSSCCTTCEEEEEEETTSC
T ss_pred Hhh-ccCCCccEEEECCCC--Ccch----hhHHHHHHHHHhcCccCCCeEEEEEecCCCC
Confidence 110 111222577777664 3321 134567777765 9999888887665433
No 64
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=76.94 E-value=28 Score=34.56 Aligned_cols=148 Identities=14% Similarity=0.122 Sum_probs=80.4
Q ss_pred HHHHHHHHhhCCCccchhHhhhHHHHhhh----cCCce-eEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEe
Q 040125 221 EEAFRLVYEICPHIQFGHFVANSSILEAF----EGESF-VHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAV 295 (514)
Q Consensus 221 ~~A~~~f~e~sP~~kfahftANqAILEA~----~g~~~-VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I 295 (514)
.++-..+.++.|.+. ...-+|.+.|.-+ .++.. =+|+|+|.|.| .+. .+..++.+. -| ..|||+|
T Consensus 42 r~~~~~~~~~~P~~~-~~a~~nr~fl~rav~~l~~~~g~~q~LDLGcG~p--T~~----~~~~la~~~--~P-~arVv~V 111 (277)
T 3giw_A 42 KEAGDAMSREWPALP-VHMRANRDWMNRAVAHLAKEAGIRQFLDIGTGIP--TSP----NLHEIAQSV--AP-ESRVVYV 111 (277)
T ss_dssp HHHHHHHHHHCTTHH-HHHHHHHHHHHHHHHHHHHTSCCCEEEEESCCSC--CSS----CHHHHHHHH--CT-TCEEEEE
T ss_pred HHHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHhccccCCCEEEEeCCCCC--ccc----HHHHHHHHH--CC-CCEEEEE
Confidence 345556678888874 3345888877653 23323 37999997531 111 223333322 13 4799999
Q ss_pred cCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccC-----cc-cccccCCcEEEEEeccccccccccccchHHHHH-
Q 040125 296 GLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQ-----TK-DIKVLENEVLVVNSILQLHCVVKESRGALNSVL- 368 (514)
Q Consensus 296 ~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~-----~~-~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L- 368 (514)
+.+...++....+|.+. -.-..+|... .+.++. +. .=.+..++.++|-+..-||++.++.. ...+|
T Consensus 112 D~sp~mLa~Ar~~l~~~---~~~~~~~v~a--D~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~--p~~~l~ 184 (277)
T 3giw_A 112 DNDPIVLTLSQGLLAST---PEGRTAYVEA--DMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDD--AVGIVR 184 (277)
T ss_dssp ECCHHHHHTTHHHHCCC---SSSEEEEEEC--CTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGC--HHHHHH
T ss_pred eCChHHHHHHHHHhccC---CCCcEEEEEe--cccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhh--HHHHHH
Confidence 99887777766665421 1123455432 233221 00 00123345555656667899987431 13455
Q ss_pred HHHHhcCCc-EEEEEeec
Q 040125 369 QIIHELSPK-VLVLVEQD 385 (514)
Q Consensus 369 ~~Ir~L~Pk-VvvlvE~e 385 (514)
+..+.|.|. .+++++--
T Consensus 185 ~l~~~L~PGG~Lvls~~~ 202 (277)
T 3giw_A 185 RLLEPLPSGSYLAMSIGT 202 (277)
T ss_dssp HHHTTSCTTCEEEEEEEC
T ss_pred HHHHhCCCCcEEEEEecc
Confidence 445668997 55555543
No 65
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=76.40 E-value=13 Score=33.93 Aligned_cols=105 Identities=20% Similarity=0.190 Sum_probs=57.0
Q ss_pred HHHhhhcC-CceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEE
Q 040125 244 SILEAFEG-ESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEF 322 (514)
Q Consensus 244 AILEA~~g-~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF 322 (514)
.+++.+.. .+.-+|+|+|.|. | .+...|+.+ ++ ++|||+.+...++...+++.. .++|
T Consensus 32 ~~~~~l~~~~~~~~vLDiGcG~----G----~~~~~l~~~--~~----~v~gvD~s~~~~~~a~~~~~~-------~v~~ 90 (250)
T 2p7i_A 32 FMVRAFTPFFRPGNLLELGSFK----G----DFTSRLQEH--FN----DITCVEASEEAISHAQGRLKD-------GITY 90 (250)
T ss_dssp HHHHHHGGGCCSSCEEEESCTT----S----HHHHHHTTT--CS----CEEEEESCHHHHHHHHHHSCS-------CEEE
T ss_pred HHHHHHHhhcCCCcEEEECCCC----C----HHHHHHHHh--CC----cEEEEeCCHHHHHHHHHhhhC-------CeEE
Confidence 34444431 2334699999653 3 244556654 22 699999887766665554322 3444
Q ss_pred EeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHH--hcCCcEEEEE
Q 040125 323 SVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIH--ELSPKVLVLV 382 (514)
Q Consensus 323 ~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir--~L~PkVvvlv 382 (514)
.. ..++++. .++..=+|-|...|||+.+ ...+|+.++ -|+|.-.+++
T Consensus 91 ~~--~d~~~~~------~~~~fD~v~~~~~l~~~~~-----~~~~l~~~~~~~LkpgG~l~i 139 (250)
T 2p7i_A 91 IH--SRFEDAQ------LPRRYDNIVLTHVLEHIDD-----PVALLKRINDDWLAEGGRLFL 139 (250)
T ss_dssp EE--SCGGGCC------CSSCEEEEEEESCGGGCSS-----HHHHHHHHHHTTEEEEEEEEE
T ss_pred EE--ccHHHcC------cCCcccEEEEhhHHHhhcC-----HHHHHHHHHHHhcCCCCEEEE
Confidence 33 2333331 1232333445556788854 246777776 6899744444
No 66
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=75.27 E-value=29 Score=31.68 Aligned_cols=109 Identities=13% Similarity=0.127 Sum_probs=55.9
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc--eEEEeec--CCc
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN--LEFSVVE--SNL 329 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp--FeF~~V~--~~l 329 (514)
.-+|+|+|.+.| .. ...||..- +| .-+||+|+.+...++.+.+++. ..|+. ++|..-. ..+
T Consensus 59 ~~~vLdiG~G~G------~~--~~~la~~~--~~-~~~v~~vD~~~~~~~~a~~~~~----~~~~~~~v~~~~~d~~~~l 123 (221)
T 3u81_A 59 PSLVLELGAYCG------YS--AVRMARLL--QP-GARLLTMEINPDCAAITQQMLN----FAGLQDKVTILNGASQDLI 123 (221)
T ss_dssp CSEEEEECCTTS------HH--HHHHHTTS--CT-TCEEEEEESCHHHHHHHHHHHH----HHTCGGGEEEEESCHHHHG
T ss_pred CCEEEEECCCCC------HH--HHHHHHhC--CC-CCEEEEEeCChHHHHHHHHHHH----HcCCCCceEEEECCHHHHH
Confidence 348999997532 22 22344321 23 3699999998877776665544 44553 5554321 111
Q ss_pred cccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEeec
Q 040125 330 ENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLVEQD 385 (514)
Q Consensus 330 E~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkVvvlvE~e 385 (514)
..+.. ......=+.|+++... |+.. ....++..++-|+|.-+++++.-
T Consensus 124 ~~~~~-~~~~~~fD~V~~d~~~--~~~~-----~~~~~~~~~~~LkpgG~lv~~~~ 171 (221)
T 3u81_A 124 PQLKK-KYDVDTLDMVFLDHWK--DRYL-----PDTLLLEKCGLLRKGTVLLADNV 171 (221)
T ss_dssp GGTTT-TSCCCCCSEEEECSCG--GGHH-----HHHHHHHHTTCCCTTCEEEESCC
T ss_pred HHHHH-hcCCCceEEEEEcCCc--ccch-----HHHHHHHhccccCCCeEEEEeCC
Confidence 11110 0001122455555322 3221 12245655588999988877643
No 67
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=75.11 E-value=31 Score=31.80 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=55.6
Q ss_pred CceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccc
Q 040125 252 ESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLEN 331 (514)
Q Consensus 252 ~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~ 331 (514)
...-+|+|+|.|. | .| ...|+.+ + .++|||+.+...++...+++ +...-.++|.. ..+++
T Consensus 38 ~~~~~vLDiG~G~----G-~~---~~~l~~~-~-----~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~~--~d~~~ 97 (263)
T 2yqz_A 38 GEEPVFLELGVGT----G-RI---ALPLIAR-G-----YRYIALDADAAMLEVFRQKI----AGVDRKVQVVQ--ADARA 97 (263)
T ss_dssp SSCCEEEEETCTT----S-TT---HHHHHTT-T-----CEEEEEESCHHHHHHHHHHT----TTSCTTEEEEE--SCTTS
T ss_pred CCCCEEEEeCCcC----C-HH---HHHHHHC-C-----CEEEEEECCHHHHHHHHHHh----hccCCceEEEE--ccccc
Confidence 3456899999753 3 22 2345544 2 48999999887777666554 22233455543 22333
Q ss_pred cCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 040125 332 LQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 332 l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE 383 (514)
+. ..++..=+|-+...||++.+ ...+|+.+ +-|+|.-.+++.
T Consensus 98 ~~-----~~~~~fD~v~~~~~l~~~~~-----~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 98 IP-----LPDESVHGVIVVHLWHLVPD-----WPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp CC-----SCTTCEEEEEEESCGGGCTT-----HHHHHHHHHHHEEEEEEEEEE
T ss_pred CC-----CCCCCeeEEEECCchhhcCC-----HHHHHHHHHHHCCCCcEEEEE
Confidence 32 22332223334456788753 23455554 668998554443
No 68
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=75.06 E-value=32 Score=30.60 Aligned_cols=111 Identities=19% Similarity=0.202 Sum_probs=60.5
Q ss_pred hHHHHhhhcC-CceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcC-Cc
Q 040125 242 NSSILEAFEG-ESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYG-IN 319 (514)
Q Consensus 242 NqAILEA~~g-~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lg-vp 319 (514)
...+++.+.. ...-+|+|+|.|. |. +...|+.+ + .++|||+.+...++.+.+ .| -.
T Consensus 34 ~~~~~~~l~~~~~~~~vLdiG~G~----G~----~~~~l~~~-~-----~~v~~~D~s~~~~~~a~~--------~~~~~ 91 (218)
T 3ou2_A 34 APAALERLRAGNIRGDVLELASGT----GY----WTRHLSGL-A-----DRVTALDGSAEMIAEAGR--------HGLDN 91 (218)
T ss_dssp HHHHHHHHTTTTSCSEEEEESCTT----SH----HHHHHHHH-S-----SEEEEEESCHHHHHHHGG--------GCCTT
T ss_pred HHHHHHHHhcCCCCCeEEEECCCC----CH----HHHHHHhc-C-----CeEEEEeCCHHHHHHHHh--------cCCCC
Confidence 4556676653 3335999999753 32 44455555 1 489999988755544433 44 23
Q ss_pred eEEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcE-EEEEeec
Q 040125 320 LEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKV-LVLVEQD 385 (514)
Q Consensus 320 FeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkV-vvlvE~e 385 (514)
.+|.. ..++++ ..++..=+|-|...|||+.++ ....+|+.+ +.|+|.- +++++..
T Consensus 92 ~~~~~--~d~~~~------~~~~~~D~v~~~~~l~~~~~~---~~~~~l~~~~~~L~pgG~l~~~~~~ 148 (218)
T 3ou2_A 92 VEFRQ--QDLFDW------TPDRQWDAVFFAHWLAHVPDD---RFEAFWESVRSAVAPGGVVEFVDVT 148 (218)
T ss_dssp EEEEE--CCTTSC------CCSSCEEEEEEESCGGGSCHH---HHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eEEEe--cccccC------CCCCceeEEEEechhhcCCHH---HHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 44433 223322 122333334445677888652 234556555 6789974 4444433
No 69
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=72.96 E-value=37 Score=30.50 Aligned_cols=101 Identities=17% Similarity=0.191 Sum_probs=54.9
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccC
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQ 333 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~ 333 (514)
.-+|+|+|.|. | .+...|+.+ ++ ++|+|+.+...++.+.+++. ..+...+|... .+.++.
T Consensus 39 ~~~vLDlG~G~----G----~~~~~l~~~--~~----~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~~~--d~~~~~ 98 (227)
T 1ve3_A 39 RGKVLDLACGV----G----GFSFLLEDY--GF----EVVGVDISEDMIRKAREYAK----SRESNVEFIVG--DARKLS 98 (227)
T ss_dssp CCEEEEETCTT----S----HHHHHHHHT--TC----EEEEEESCHHHHHHHHHHHH----HTTCCCEEEEC--CTTSCC
T ss_pred CCeEEEEeccC----C----HHHHHHHHc--CC----EEEEEECCHHHHHHHHHHHH----hcCCCceEEEC--chhcCC
Confidence 45899999653 3 233455554 22 89999988777766666543 33334455432 233222
Q ss_pred cccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 040125 334 TKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLV 382 (514)
Q Consensus 334 ~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlv 382 (514)
+.-..=+.|+.|..+.+|+..+ ...+|+.+ +.|+|.-.+++
T Consensus 99 ---~~~~~~D~v~~~~~~~~~~~~~-----~~~~l~~~~~~L~~gG~l~~ 140 (227)
T 1ve3_A 99 ---FEDKTFDYVIFIDSIVHFEPLE-----LNQVFKEVRRVLKPSGKFIM 140 (227)
T ss_dssp ---SCTTCEEEEEEESCGGGCCHHH-----HHHHHHHHHHHEEEEEEEEE
T ss_pred ---CCCCcEEEEEEcCchHhCCHHH-----HHHHHHHHHHHcCCCcEEEE
Confidence 1111225666665554555422 24455554 66899854444
No 70
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=72.86 E-value=34 Score=29.61 Aligned_cols=107 Identities=14% Similarity=0.196 Sum_probs=55.4
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEE
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEF 322 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF 322 (514)
..+++.+-. +.-+|+|+|.+. |. +...|+.+ + .++|+|+.+...++.+.+++. + .+|
T Consensus 37 ~~~l~~~~~-~~~~vLdiG~G~----G~----~~~~l~~~-~-----~~v~~~D~~~~~~~~a~~~~~------~--~~~ 93 (195)
T 3cgg_A 37 ARLIDAMAP-RGAKILDAGCGQ----GR----IGGYLSKQ-G-----HDVLGTDLDPILIDYAKQDFP------E--ARW 93 (195)
T ss_dssp HHHHHHHSC-TTCEEEEETCTT----TH----HHHHHHHT-T-----CEEEEEESCHHHHHHHHHHCT------T--SEE
T ss_pred HHHHHHhcc-CCCeEEEECCCC----CH----HHHHHHHC-C-----CcEEEEcCCHHHHHHHHHhCC------C--CcE
Confidence 345555532 445899999753 32 34455554 2 389999988776666655431 2 333
Q ss_pred EeecCCccccCcccccccCC--cEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 040125 323 SVVESNLENLQTKDIKVLEN--EVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 323 ~~V~~~lE~l~~~~l~~~~~--EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE 383 (514)
.. ..+.++. ..++ +.|+.+ ...+|++..+ ....+|+.+ +.|+|.-.+++.
T Consensus 94 ~~--~d~~~~~-----~~~~~~D~i~~~-~~~~~~~~~~---~~~~~l~~~~~~l~~~G~l~~~ 146 (195)
T 3cgg_A 94 VV--GDLSVDQ-----ISETDFDLIVSA-GNVMGFLAED---GREPALANIHRALGADGRAVIG 146 (195)
T ss_dssp EE--CCTTTSC-----CCCCCEEEEEEC-CCCGGGSCHH---HHHHHHHHHHHHEEEEEEEEEE
T ss_pred EE--cccccCC-----CCCCceeEEEEC-CcHHhhcChH---HHHHHHHHHHHHhCCCCEEEEE
Confidence 32 2232221 2222 333333 1234655321 234555554 668998666554
No 71
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=71.34 E-value=30 Score=35.06 Aligned_cols=114 Identities=17% Similarity=0.212 Sum_probs=63.6
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc--e
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN--L 320 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp--F 320 (514)
++|++...-.+.-.|+|+|.|- | .+...++.+ | . -++|||+.+ +.++.+.++ ++..|++ .
T Consensus 53 ~~i~~~~~~~~~~~VLDlGcGt----G----~ls~~la~~-g--~--~~V~gvD~s-~~~~~a~~~----~~~~~~~~~v 114 (376)
T 3r0q_C 53 NAVFQNKHHFEGKTVLDVGTGS----G----ILAIWSAQA-G--A--RKVYAVEAT-KMADHARAL----VKANNLDHIV 114 (376)
T ss_dssp HHHHTTTTTTTTCEEEEESCTT----T----HHHHHHHHT-T--C--SEEEEEESS-TTHHHHHHH----HHHTTCTTTE
T ss_pred HHHHhccccCCCCEEEEeccCc----C----HHHHHHHhc-C--C--CEEEEEccH-HHHHHHHHH----HHHcCCCCeE
Confidence 3444444444456899999753 3 233445554 2 2 399999988 666555433 4556665 4
Q ss_pred EEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEee
Q 040125 321 EFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVEQ 384 (514)
Q Consensus 321 eF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE~ 384 (514)
+| +...++++... ..=++|+.|.+ .|.+..+ ...+.+|..+ +-|+|.-+++...
T Consensus 115 ~~--~~~d~~~~~~~----~~~D~Iv~~~~--~~~l~~e--~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 115 EV--IEGSVEDISLP----EKVDVIISEWM--GYFLLRE--SMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp EE--EESCGGGCCCS----SCEEEEEECCC--BTTBTTT--CTHHHHHHHHHHHEEEEEEEESSE
T ss_pred EE--EECchhhcCcC----CcceEEEEcCh--hhcccch--HHHHHHHHHHHhhCCCCeEEEEec
Confidence 44 33444544321 12234554443 3444333 2357788887 8899997776543
No 72
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=70.59 E-value=13 Score=35.83 Aligned_cols=117 Identities=14% Similarity=0.159 Sum_probs=62.4
Q ss_pred hhHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCce
Q 040125 241 ANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINL 320 (514)
Q Consensus 241 ANqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpF 320 (514)
.-..+++.+..... .|+|+|.|. |. +...|+.+ + .++|||+.+...++.+.+++.+..-.+.-.+
T Consensus 71 ~~~~~~~~~~~~~~-~vLDlGcG~----G~----~~~~l~~~-~-----~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v 135 (299)
T 3g2m_A 71 EAREFATRTGPVSG-PVLELAAGM----GR----LTFPFLDL-G-----WEVTALELSTSVLAAFRKRLAEAPADVRDRC 135 (299)
T ss_dssp HHHHHHHHHCCCCS-CEEEETCTT----TT----THHHHHTT-T-----CCEEEEESCHHHHHHHHHHHHTSCHHHHTTE
T ss_pred HHHHHHHhhCCCCC-cEEEEeccC----CH----HHHHHHHc-C-----CeEEEEECCHHHHHHHHHHHhhcccccccce
Confidence 33455666654444 899999753 33 34455554 2 4799999988777777666543211111345
Q ss_pred EEEeecCCccccCcccccccCCcE-EEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 040125 321 EFSVVESNLENLQTKDIKVLENEV-LVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 321 eF~~V~~~lE~l~~~~l~~~~~Ea-LaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE 383 (514)
+|.. ..++++. . ++.. +||.+...+|++.. .....+|+.+ +.|+|.-.+++.
T Consensus 136 ~~~~--~d~~~~~-----~-~~~fD~v~~~~~~~~~~~~---~~~~~~l~~~~~~L~pgG~l~~~ 189 (299)
T 3g2m_A 136 TLVQ--GDMSAFA-----L-DKRFGTVVISSGSINELDE---ADRRGLYASVREHLEPGGKFLLS 189 (299)
T ss_dssp EEEE--CBTTBCC-----C-SCCEEEEEECHHHHTTSCH---HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEe--CchhcCC-----c-CCCcCEEEECCcccccCCH---HHHHHHHHHHHHHcCCCcEEEEE
Confidence 5543 2233332 1 2222 23323334565432 2245666665 568998555554
No 73
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=70.23 E-value=32 Score=32.91 Aligned_cols=111 Identities=13% Similarity=0.121 Sum_probs=61.1
Q ss_pred CceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccc
Q 040125 252 ESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLEN 331 (514)
Q Consensus 252 ~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~ 331 (514)
...-+|+|+|.|. | .+...|+.+- +| ..++|||+.+...++.+.+++.+. ....-..+|.. ..+++
T Consensus 35 ~~~~~vLDiGcG~----G----~~~~~la~~~--~~-~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~~v~~~~--~d~~~ 100 (299)
T 3g5t_A 35 GERKLLVDVGCGP----G----TATLQMAQEL--KP-FEQIIGSDLSATMIKTAEVIKEGS-PDTYKNVSFKI--SSSDD 100 (299)
T ss_dssp SCCSEEEEETCTT----T----HHHHHHHHHS--SC-CSEEEEEESCHHHHHHHHHHHHHC-C-CCTTEEEEE--CCTTC
T ss_pred CCCCEEEEECCCC----C----HHHHHHHHhC--CC-CCEEEEEeCCHHHHHHHHHHHHhc-cCCCCceEEEE--cCHHh
Confidence 3567899999753 3 3344455431 12 469999999887777776665432 11133455544 23444
Q ss_pred cCccc-ccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 040125 332 LQTKD-IKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLV 382 (514)
Q Consensus 332 l~~~~-l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlv 382 (514)
+.... ..+..+..=+|-|...|||+ + ...+|+.+ +.|+|.-.+++
T Consensus 101 ~~~~~~~~~~~~~fD~V~~~~~l~~~-~-----~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 101 FKFLGADSVDKQKIDMITAVECAHWF-D-----FEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp CGGGCTTTTTSSCEEEEEEESCGGGS-C-----HHHHHHHHHHHEEEEEEEEE
T ss_pred CCccccccccCCCeeEEeHhhHHHHh-C-----HHHHHHHHHHhcCCCcEEEE
Confidence 33211 01112444455566678988 3 23455554 66899855544
No 74
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=70.11 E-value=47 Score=28.62 Aligned_cols=114 Identities=13% Similarity=0.111 Sum_probs=63.2
Q ss_pred hhHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc-
Q 040125 241 ANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN- 319 (514)
Q Consensus 241 ANqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp- 319 (514)
..+.+++.+.-...-+|+|+|.|. | .+...++.+ + .++|+|+.+...++.+.+++ +..|++
T Consensus 40 ~~~~l~~~~~~~~~~~vLdiG~G~----G----~~~~~~~~~-~-----~~v~~~D~~~~~~~~a~~~~----~~~~~~~ 101 (194)
T 1dus_A 40 GTKILVENVVVDKDDDILDLGCGY----G----VIGIALADE-V-----KSTTMADINRRAIKLAKENI----KLNNLDN 101 (194)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTT----S----HHHHHHGGG-S-----SEEEEEESCHHHHHHHHHHH----HHTTCTT
T ss_pred HHHHHHHHcccCCCCeEEEeCCCC----C----HHHHHHHHc-C-----CeEEEEECCHHHHHHHHHHH----HHcCCCc
Confidence 446677777655667899999753 3 234456655 2 48999998887776666554 344555
Q ss_pred --eEEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEee
Q 040125 320 --LEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVEQ 384 (514)
Q Consensus 320 --FeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE~ 384 (514)
++|... .+.+.. .-..=+.|+.|..+ |+-. .....+|+.+ +.|+|.-.+++..
T Consensus 102 ~~~~~~~~--d~~~~~----~~~~~D~v~~~~~~--~~~~----~~~~~~l~~~~~~L~~gG~l~~~~ 157 (194)
T 1dus_A 102 YDIRVVHS--DLYENV----KDRKYNKIITNPPI--RAGK----EVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp SCEEEEEC--STTTTC----TTSCEEEEEECCCS--TTCH----HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cceEEEEC--chhccc----ccCCceEEEECCCc--ccch----hHHHHHHHHHHHHcCCCCEEEEEE
Confidence 555432 222211 11112455555443 4311 1234555554 6689985555543
No 75
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=69.50 E-value=14 Score=36.83 Aligned_cols=118 Identities=17% Similarity=0.211 Sum_probs=65.3
Q ss_pred hhHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCce
Q 040125 241 ANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINL 320 (514)
Q Consensus 241 ANqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpF 320 (514)
..+.+++.+.....-+|+|+|-|.| .+...|+.+ + | ..++|+|+.+...++.+.+++. ..|+..
T Consensus 184 ~~~~ll~~l~~~~~~~VLDlGcG~G--------~~~~~la~~--~-~-~~~v~~vD~s~~~l~~a~~~~~----~~~~~~ 247 (343)
T 2pjd_A 184 GSQLLLSTLTPHTKGKVLDVGCGAG--------VLSVAFARH--S-P-KIRLTLCDVSAPAVEASRATLA----ANGVEG 247 (343)
T ss_dssp HHHHHHHHSCTTCCSBCCBTTCTTS--------HHHHHHHHH--C-T-TCBCEEEESBHHHHHHHHHHHH----HTTCCC
T ss_pred HHHHHHHhcCcCCCCeEEEecCccC--------HHHHHHHHH--C-C-CCEEEEEECCHHHHHHHHHHHH----HhCCCC
Confidence 4677888885434447999996532 233445544 2 3 4699999988877777766553 356665
Q ss_pred EEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 040125 321 EFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 321 eF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE 383 (514)
+|.. ....+.. -..=+.|+.|..| |+...........+|+.+ +.|+|.-.+++.
T Consensus 248 ~~~~--~d~~~~~-----~~~fD~Iv~~~~~--~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 302 (343)
T 2pjd_A 248 EVFA--SNVFSEV-----KGRFDMIISNPPF--HDGMQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (343)
T ss_dssp EEEE--CSTTTTC-----CSCEEEEEECCCC--CSSSHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEEE--ccccccc-----cCCeeEEEECCCc--ccCccCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 5522 2121110 1112466666655 543221122345666666 568998555443
No 76
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=69.28 E-value=50 Score=30.32 Aligned_cols=119 Identities=13% Similarity=0.156 Sum_probs=62.3
Q ss_pred hhHHHHhhhcCC-----ceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHh
Q 040125 241 ANSSILEAFEGE-----SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKT 315 (514)
Q Consensus 241 ANqAILEA~~g~-----~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~ 315 (514)
....+++.+... +.-.|+|+|.|.| .+...|+.+. ..++|+|+.+...++.+.+++...-
T Consensus 62 ~~~~~~~~l~~~~~~~~~~~~vLDiGcG~G--------~~~~~l~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~~-- 126 (241)
T 2ex4_A 62 SSRKFLQRFLREGPNKTGTSCALDCGAGIG--------RITKRLLLPL-----FREVDMVDITEDFLVQAKTYLGEEG-- 126 (241)
T ss_dssp HHHHHHHGGGC----CCCCSEEEEETCTTT--------HHHHHTTTTT-----CSEEEEEESCHHHHHHHHHHTGGGG--
T ss_pred hHHHHHHHHHHhcccCCCCCEEEEECCCCC--------HHHHHHHHhc-----CCEEEEEeCCHHHHHHHHHHhhhcC--
Confidence 344555555332 3568999997532 2344555542 1489999998877776665543221
Q ss_pred cCCceEEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEE-EEeec
Q 040125 316 YGINLEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLV-LVEQD 385 (514)
Q Consensus 316 lgvpFeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvv-lvE~e 385 (514)
+...+|.. ..++++. ..++..=+|-|...|||+.++ ....+|+.+ +.|+|.-.+ +++..
T Consensus 127 -~~~~~~~~--~d~~~~~-----~~~~~fD~v~~~~~l~~~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~ 187 (241)
T 2ex4_A 127 -KRVRNYFC--CGLQDFT-----PEPDSYDVIWIQWVIGHLTDQ---HLAEFLRRCKGSLRPNGIIVIKDNM 187 (241)
T ss_dssp -GGEEEEEE--CCGGGCC-----CCSSCEEEEEEESCGGGSCHH---HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -CceEEEEE--cChhhcC-----CCCCCEEEEEEcchhhhCCHH---HHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 22344433 2233332 222222223334567887642 234566555 668998444 44543
No 77
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=69.16 E-value=27 Score=30.05 Aligned_cols=102 Identities=14% Similarity=0.076 Sum_probs=55.8
Q ss_pred HHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEE
Q 040125 244 SILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFS 323 (514)
Q Consensus 244 AILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~ 323 (514)
.+++.+.-.+.-.|+|+|.+.| . +...|+.+. . ++|+|+.+...++.+.++ .-..+|.
T Consensus 8 ~~~~~~~~~~~~~vLDiG~G~G----~----~~~~l~~~~-----~-~v~~vD~s~~~~~~a~~~--------~~~v~~~ 65 (170)
T 3i9f_A 8 EYLPNIFEGKKGVIVDYGCGNG----F----YCKYLLEFA-----T-KLYCIDINVIALKEVKEK--------FDSVITL 65 (170)
T ss_dssp TTHHHHHSSCCEEEEEETCTTC----T----THHHHHTTE-----E-EEEEECSCHHHHHHHHHH--------CTTSEEE
T ss_pred HHHHhcCcCCCCeEEEECCCCC----H----HHHHHHhhc-----C-eEEEEeCCHHHHHHHHHh--------CCCcEEE
Confidence 3455555556678999997543 2 334455432 2 999999887766666555 1123332
Q ss_pred eecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 040125 324 VVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLV 382 (514)
Q Consensus 324 ~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlv 382 (514)
.-. +...++..=+|-+...+||+.+ ...+|+.+ +.|+|.-.+++
T Consensus 66 ~~d----------~~~~~~~~D~v~~~~~l~~~~~-----~~~~l~~~~~~L~pgG~l~~ 110 (170)
T 3i9f_A 66 SDP----------KEIPDNSVDFILFANSFHDMDD-----KQHVISEVKRILKDDGRVII 110 (170)
T ss_dssp SSG----------GGSCTTCEEEEEEESCSTTCSC-----HHHHHHHHHHHEEEEEEEEE
T ss_pred eCC----------CCCCCCceEEEEEccchhcccC-----HHHHHHHHHHhcCCCCEEEE
Confidence 211 2223333333334555688743 23455544 67899744444
No 78
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=68.41 E-value=15 Score=36.79 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=61.8
Q ss_pred hHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc--
Q 040125 242 NSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN-- 319 (514)
Q Consensus 242 NqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp-- 319 (514)
.++|++.+.-.+.-+|+|+|-|- | .|...++.++ .-++|||+.+. .++.+. +.++..|++
T Consensus 39 ~~~i~~~l~~~~~~~VLDiGcGt----G----~ls~~la~~g-----~~~V~~vD~s~-~~~~a~----~~~~~~~l~~~ 100 (348)
T 2y1w_A 39 QRAILQNHTDFKDKIVLDVGCGS----G----ILSFFAAQAG-----ARKIYAVEAST-MAQHAE----VLVKSNNLTDR 100 (348)
T ss_dssp HHHHHHTGGGTTTCEEEEETCTT----S----HHHHHHHHTT-----CSEEEEEECST-HHHHHH----HHHHHTTCTTT
T ss_pred HHHHHhccccCCcCEEEEcCCCc----c----HHHHHHHhCC-----CCEEEEECCHH-HHHHHH----HHHHHcCCCCc
Confidence 35777777655566999999643 2 3445566541 25999999873 443332 333444553
Q ss_pred eEEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEe
Q 040125 320 LEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLVE 383 (514)
Q Consensus 320 FeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkVvvlvE 383 (514)
.+| +...++++... ..=+.|+.+.+ ++|+..+. ..+.+...-+-|+|.-+++..
T Consensus 101 v~~--~~~d~~~~~~~----~~~D~Ivs~~~--~~~~~~~~--~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 101 IVV--IPGKVEEVSLP----EQVDIIISEPM--GYMLFNER--MLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp EEE--EESCTTTCCCS----SCEEEEEECCC--BTTBTTTS--HHHHHHHGGGGEEEEEEEESC
T ss_pred EEE--EEcchhhCCCC----CceeEEEEeCc--hhcCChHH--HHHHHHHHHhhcCCCeEEEEe
Confidence 444 33334443211 11134444433 46655432 234455555779999777644
No 79
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=68.14 E-value=63 Score=29.65 Aligned_cols=111 Identities=18% Similarity=0.253 Sum_probs=59.3
Q ss_pred HHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEe
Q 040125 245 ILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSV 324 (514)
Q Consensus 245 ILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~ 324 (514)
+++.......-+|+|+|.|. | .+...|+.+ | .++|||+.+...++.+.+++. ..|+.++|..
T Consensus 33 ~~~~~~~~~~~~vLDlGcG~----G----~~~~~l~~~-~-----~~v~gvD~s~~~l~~a~~~~~----~~~~~v~~~~ 94 (252)
T 1wzn_A 33 IFKEDAKREVRRVLDLACGT----G----IPTLELAER-G-----YEVVGLDLHEEMLRVARRKAK----ERNLKIEFLQ 94 (252)
T ss_dssp HHHHTCSSCCCEEEEETCTT----C----HHHHHHHHT-T-----CEEEEEESCHHHHHHHHHHHH----HTTCCCEEEE
T ss_pred HHHHhcccCCCEEEEeCCCC----C----HHHHHHHHC-C-----CeEEEEECCHHHHHHHHHHHH----hcCCceEEEE
Confidence 33443334456899999753 3 233455554 2 489999998877777766643 3455555543
Q ss_pred ecCCccccCcccccccCCcEEEEEecc-ccccccccccchHHHHHHHH-HhcCCcEEEEEee
Q 040125 325 VESNLENLQTKDIKVLENEVLVVNSIL-QLHCVVKESRGALNSVLQII-HELSPKVLVLVEQ 384 (514)
Q Consensus 325 V~~~lE~l~~~~l~~~~~EaLaVN~~~-~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE~ 384 (514)
..+.++.. . +..=+|-|.+ .+|++.. .....+|+.+ +.|+|.-+++++-
T Consensus 95 --~d~~~~~~-----~-~~fD~v~~~~~~~~~~~~---~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 95 --GDVLEIAF-----K-NEFDAVTMFFSTIMYFDE---EDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp --SCGGGCCC-----C-SCEEEEEECSSGGGGSCH---HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --CChhhccc-----C-CCccEEEEcCCchhcCCH---HHHHHHHHHHHHHcCCCeEEEEec
Confidence 22333321 1 2121222332 2233321 2344566655 6689997777653
No 80
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=67.83 E-value=42 Score=31.51 Aligned_cols=109 Identities=14% Similarity=0.113 Sum_probs=56.0
Q ss_pred ceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCcccc
Q 040125 253 SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENL 332 (514)
Q Consensus 253 ~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l 332 (514)
+.-+|+|+|.|. |. + ...|+.++ ..++|||+.+...++.+.+++ +..|+.-..+.+...++++
T Consensus 64 ~~~~vLDiGcG~----G~-~---~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~v~~~~~d~~~~ 126 (298)
T 1ri5_A 64 RGDSVLDLGCGK----GG-D---LLKYERAG-----IGEYYGVDIAEVSINDARVRA----RNMKRRFKVFFRAQDSYGR 126 (298)
T ss_dssp TTCEEEEETCTT----TT-T---HHHHHHHT-----CSEEEEEESCHHHHHHHHHHH----HTSCCSSEEEEEESCTTTS
T ss_pred CCCeEEEECCCC----CH-H---HHHHHHCC-----CCEEEEEECCHHHHHHHHHHH----HhcCCCccEEEEECCcccc
Confidence 345899999753 32 2 22244442 248999999887777666654 3445532233333333332
Q ss_pred CcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 040125 333 QTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 333 ~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE 383 (514)
.. . .++..=+|-|...||++.. +......+|+.+ +-|+|.-.+++.
T Consensus 127 ~~---~-~~~~fD~v~~~~~l~~~~~-~~~~~~~~l~~~~~~LkpgG~l~~~ 173 (298)
T 1ri5_A 127 HM---D-LGKEFDVISSQFSFHYAFS-TSESLDIAQRNIARHLRPGGYFIMT 173 (298)
T ss_dssp CC---C-CSSCEEEEEEESCGGGGGS-SHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cc---C-CCCCcCEEEECchhhhhcC-CHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 11 0 1232222334445677532 112334566655 568998555543
No 81
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=67.47 E-value=27 Score=30.03 Aligned_cols=103 Identities=14% Similarity=0.186 Sum_probs=56.7
Q ss_pred HHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCC-ceEE
Q 040125 244 SILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGI-NLEF 322 (514)
Q Consensus 244 AILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgv-pFeF 322 (514)
.|++.+.-.+.-+|+|+|.|. |. +...|+. + ..++|+|+.+...++.+.+++ +..|+ ..+|
T Consensus 26 ~~~~~~~~~~~~~vLdiG~G~----G~----~~~~l~~-----~-~~~v~~vD~~~~~~~~a~~~~----~~~~~~~~~~ 87 (183)
T 2yxd_A 26 VSIGKLNLNKDDVVVDVGCGS----GG----MTVEIAK-----R-CKFVYAIDYLDGAIEVTKQNL----AKFNIKNCQI 87 (183)
T ss_dssp HHHHHHCCCTTCEEEEESCCC----SH----HHHHHHT-----T-SSEEEEEECSHHHHHHHHHHH----HHTTCCSEEE
T ss_pred HHHHHcCCCCCCEEEEeCCCC----CH----HHHHHHh-----c-CCeEEEEeCCHHHHHHHHHHH----HHcCCCcEEE
Confidence 344444444456899999753 32 3344544 2 369999998877777666554 34454 3444
Q ss_pred EeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEE
Q 040125 323 SVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLV 382 (514)
Q Consensus 323 ~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkVvvlv 382 (514)
.. ..+.+. +.-..=+.++.+.. + ....+|+.++++ |.-.+++
T Consensus 88 ~~--~d~~~~----~~~~~~D~i~~~~~---~--------~~~~~l~~~~~~-~gG~l~~ 129 (183)
T 2yxd_A 88 IK--GRAEDV----LDKLEFNKAFIGGT---K--------NIEKIIEILDKK-KINHIVA 129 (183)
T ss_dssp EE--SCHHHH----GGGCCCSEEEECSC---S--------CHHHHHHHHHHT-TCCEEEE
T ss_pred EE--CCcccc----ccCCCCcEEEECCc---c--------cHHHHHHHHhhC-CCCEEEE
Confidence 32 222221 11112245554433 1 245788899888 8744444
No 82
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=66.94 E-value=52 Score=29.81 Aligned_cols=110 Identities=15% Similarity=0.227 Sum_probs=58.7
Q ss_pred hHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceE
Q 040125 242 NSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLE 321 (514)
Q Consensus 242 NqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFe 321 (514)
-..|++.+.....-+|+|+|.|. |. +...|+.+ + + -++|||+.+...++.+.+++.. . .++
T Consensus 32 ~~~l~~~~~~~~~~~vLdiG~G~----G~----~~~~l~~~--~-~--~~v~~vD~s~~~~~~a~~~~~~----~--~~~ 92 (243)
T 3bkw_A 32 WPALRAMLPEVGGLRIVDLGCGF----GW----FCRWAHEH--G-A--SYVLGLDLSEKMLARARAAGPD----T--GIT 92 (243)
T ss_dssp HHHHHHHSCCCTTCEEEEETCTT----CH----HHHHHHHT--T-C--SEEEEEESCHHHHHHHHHTSCS----S--SEE
T ss_pred HHHHHHhccccCCCEEEEEcCcC----CH----HHHHHHHC--C-C--CeEEEEcCCHHHHHHHHHhccc----C--Cce
Confidence 34566666655566899999753 32 33455554 2 1 2899999887666655444321 1 234
Q ss_pred EEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 040125 322 FSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLV 382 (514)
Q Consensus 322 F~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlv 382 (514)
|.. ..++++. ..++..=+|-+...|||+.+ ...+|+.+ +.|+|.-.+++
T Consensus 93 ~~~--~d~~~~~-----~~~~~fD~v~~~~~l~~~~~-----~~~~l~~~~~~L~pgG~l~~ 142 (243)
T 3bkw_A 93 YER--ADLDKLH-----LPQDSFDLAYSSLALHYVED-----VARLFRTVHQALSPGGHFVF 142 (243)
T ss_dssp EEE--CCGGGCC-----CCTTCEEEEEEESCGGGCSC-----HHHHHHHHHHHEEEEEEEEE
T ss_pred EEE--cChhhcc-----CCCCCceEEEEeccccccch-----HHHHHHHHHHhcCcCcEEEE
Confidence 433 2233222 22232222334446788742 24555554 66899854444
No 83
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=66.31 E-value=75 Score=28.63 Aligned_cols=113 Identities=17% Similarity=0.298 Sum_probs=62.3
Q ss_pred HHHHhhhcCC--ceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCce
Q 040125 243 SSILEAFEGE--SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINL 320 (514)
Q Consensus 243 qAILEA~~g~--~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpF 320 (514)
+.|.+.+... +.-+|+|+|.|. |. +...|+.+ + .++|+|+.+...++.+.+++. ..++.+
T Consensus 25 ~~~~~~l~~~~~~~~~vLdiG~G~----G~----~~~~l~~~-~-----~~~~~~D~s~~~~~~a~~~~~----~~~~~~ 86 (246)
T 1y8c_A 25 DFIIEKCVENNLVFDDYLDLACGT----GN----LTENLCPK-F-----KNTWAVDLSQEMLSEAENKFR----SQGLKP 86 (246)
T ss_dssp HHHHHHHHTTTCCTTEEEEETCTT----ST----THHHHGGG-S-----SEEEEECSCHHHHHHHHHHHH----HTTCCC
T ss_pred HHHHHHHHHhCCCCCeEEEeCCCC----CH----HHHHHHHC-C-----CcEEEEECCHHHHHHHHHHHh----hcCCCe
Confidence 3444444432 556899999753 32 23445554 2 379999998877777766653 344444
Q ss_pred EEEeecCCccccCcccccccCCcEEEEEecc-ccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 040125 321 EFSVVESNLENLQTKDIKVLENEVLVVNSIL-QLHCVVKESRGALNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 321 eF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~-~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE 383 (514)
+|.. ..++++. .. +..=+|-|.. .|||+.+. .....+|+.+ +.|+|.-+++++
T Consensus 87 ~~~~--~d~~~~~-----~~-~~fD~v~~~~~~l~~~~~~--~~~~~~l~~~~~~L~pgG~l~~~ 141 (246)
T 1y8c_A 87 RLAC--QDISNLN-----IN-RKFDLITCCLDSTNYIIDS--DDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp EEEC--CCGGGCC-----CS-CCEEEEEECTTGGGGCCSH--HHHHHHHHHHHTTEEEEEEEEEE
T ss_pred EEEe--cccccCC-----cc-CCceEEEEcCccccccCCH--HHHHHHHHHHHHhcCCCcEEEEE
Confidence 5533 2233322 11 2222233444 67887431 1234666666 457998666654
No 84
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=65.98 E-value=14 Score=34.58 Aligned_cols=112 Identities=15% Similarity=0.124 Sum_probs=56.8
Q ss_pred ceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc-eEEEeecCCccc
Q 040125 253 SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN-LEFSVVESNLEN 331 (514)
Q Consensus 253 ~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp-FeF~~V~~~lE~ 331 (514)
..=+|+|+|.|. | .+...||.+. | ..++|||+.+.+.+-+...+..+-++..|++ .+|.. ...++
T Consensus 24 ~~~~vLDiGCG~----G----~~~~~la~~~---~-~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~--~d~~~ 89 (225)
T 3p2e_A 24 FDRVHIDLGTGD----G----RNIYKLAIND---Q-NTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVI--AAAES 89 (225)
T ss_dssp CSEEEEEETCTT----S----HHHHHHHHTC---T-TEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEEC--CBTTB
T ss_pred CCCEEEEEeccC----c----HHHHHHHHhC---C-CCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEE--cCHHH
Confidence 344799998642 2 4556677542 3 4899999988544433332223334456664 55533 33444
Q ss_pred cCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 040125 332 LQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLV 382 (514)
Q Consensus 332 l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlv 382 (514)
+. .. ..|-+..|.+.+..+++..........+|+.+ |-|+|.-.+++
T Consensus 90 l~-~~---~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 90 LP-FE---LKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp CC-GG---GTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred hh-hh---ccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 42 11 12445555555433322100000012455555 56899865555
No 85
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=65.24 E-value=41 Score=33.27 Aligned_cols=98 Identities=12% Similarity=0.200 Sum_probs=51.5
Q ss_pred ceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCcccc
Q 040125 253 SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENL 332 (514)
Q Consensus 253 ~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l 332 (514)
+.-+|+|+|-| .| .+...|+.+- | .+++|+++. ...++ .|+... ..+|..- .+.+
T Consensus 188 ~~~~vlDvG~G----~G----~~~~~l~~~~---p-~~~~~~~D~-~~~~~--------~a~~~~-~v~~~~~--d~~~- 242 (352)
T 1fp2_A 188 GLESIVDVGGG----TG----TTAKIICETF---P-KLKCIVFDR-PQVVE--------NLSGSN-NLTYVGG--DMFT- 242 (352)
T ss_dssp TCSEEEEETCT----TS----HHHHHHHHHC---T-TCEEEEEEC-HHHHT--------TCCCBT-TEEEEEC--CTTT-
T ss_pred cCceEEEeCCC----cc----HHHHHHHHHC---C-CCeEEEeeC-HHHHh--------hcccCC-CcEEEec--cccC-
Confidence 34689999964 34 3455566553 3 479999997 43332 223221 1444432 1211
Q ss_pred CcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCC---c-EEEEEeec
Q 040125 333 QTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSP---K-VLVLVEQD 385 (514)
Q Consensus 333 ~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~P---k-VvvlvE~e 385 (514)
.+. .-++++ +...||++.++ ....+|+.+ +.|+| . .++++|..
T Consensus 243 ---~~p--~~D~v~--~~~~lh~~~d~---~~~~~l~~~~~~L~p~~~gG~l~i~e~~ 290 (352)
T 1fp2_A 243 ---SIP--NADAVL--LKYILHNWTDK---DCLRILKKCKEAVTNDGKRGKVTIIDMV 290 (352)
T ss_dssp ---CCC--CCSEEE--EESCGGGSCHH---HHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred ---CCC--CccEEE--eehhhccCCHH---HHHHHHHHHHHhCCCCCCCcEEEEEEee
Confidence 111 134444 44556887653 123566665 55899 4 56666654
No 86
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=64.00 E-value=32 Score=31.98 Aligned_cols=113 Identities=12% Similarity=0.148 Sum_probs=60.0
Q ss_pred ceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc-eEEEeecCCccc
Q 040125 253 SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN-LEFSVVESNLEN 331 (514)
Q Consensus 253 ~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp-FeF~~V~~~lE~ 331 (514)
+.-.|+|+|.|. | .+...||.+. | ..+++||+.+...++.+.++ ++..|++ ++|.. ...++
T Consensus 34 ~~~~vLDiGcG~----G----~~~~~lA~~~---p-~~~v~giD~s~~~l~~a~~~----~~~~~l~nv~~~~--~Da~~ 95 (218)
T 3dxy_A 34 EAPVTLEIGFGM----G----ASLVAMAKDR---P-EQDFLGIEVHSPGVGACLAS----AHEEGLSNLRVMC--HDAVE 95 (218)
T ss_dssp CCCEEEEESCTT----C----HHHHHHHHHC---T-TSEEEEECSCHHHHHHHHHH----HHHTTCSSEEEEC--SCHHH
T ss_pred CCCeEEEEeeeC----h----HHHHHHHHHC---C-CCeEEEEEecHHHHHHHHHH----HHHhCCCcEEEEE--CCHHH
Confidence 445799999643 3 2344455542 3 47999999988777766555 4455653 55532 22222
Q ss_pred cCcccccccCC--cEEEEEeccccccccccccc-hHHHHHHHH-HhcCCcEEEEEeec
Q 040125 332 LQTKDIKVLEN--EVLVVNSILQLHCVVKESRG-ALNSVLQII-HELSPKVLVLVEQD 385 (514)
Q Consensus 332 l~~~~l~~~~~--EaLaVN~~~~Lh~l~~es~~-~~~~~L~~I-r~L~PkVvvlvE~e 385 (514)
+-+.. +.++ +.|.+|+....++....... ....||+.+ +.|+|.-++++.-|
T Consensus 96 ~l~~~--~~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 96 VLHKM--IPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp HHHHH--SCTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred HHHHH--cCCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 11111 1222 45666644443332221100 013577777 55999977776654
No 87
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=63.12 E-value=80 Score=31.16 Aligned_cols=107 Identities=17% Similarity=0.201 Sum_probs=55.7
Q ss_pred HHHhhh--cCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceE
Q 040125 244 SILEAF--EGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLE 321 (514)
Q Consensus 244 AILEA~--~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFe 321 (514)
.|++.+ .-...-+|+|+|-+ .| .+...|+.+- | .+++|+++.+ ..++ .|+.+. .++
T Consensus 182 ~~~~~~~~~~~~~~~vlDvG~G----~G----~~~~~l~~~~---p-~~~~~~~D~~-~~~~--------~a~~~~-~v~ 239 (358)
T 1zg3_A 182 LVLQENKRVFEGLESLVDVGGG----TG----GVTKLIHEIF---P-HLKCTVFDQP-QVVG--------NLTGNE-NLN 239 (358)
T ss_dssp HHHHHTHHHHHTCSEEEEETCT----TS----HHHHHHHHHC---T-TSEEEEEECH-HHHS--------SCCCCS-SEE
T ss_pred HHHHhcchhccCCCEEEEECCC----cC----HHHHHHHHHC---C-CCeEEEeccH-HHHh--------hcccCC-CcE
Confidence 566666 11234589999964 33 3455566553 3 5899999863 3332 222221 244
Q ss_pred EEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCC---c-EEEEEeec
Q 040125 322 FSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSP---K-VLVLVEQD 385 (514)
Q Consensus 322 F~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~P---k-VvvlvE~e 385 (514)
|..- .+.+ .+. .-++++.+ ..||++.++ ....+|+.+ +.|+| . .++++|.-
T Consensus 240 ~~~~--d~~~----~~~--~~D~v~~~--~vlh~~~d~---~~~~~l~~~~~~L~p~~~gG~l~i~e~~ 295 (358)
T 1zg3_A 240 FVGG--DMFK----SIP--SADAVLLK--WVLHDWNDE---QSLKILKNSKEAISHKGKDGKVIIIDIS 295 (358)
T ss_dssp EEEC--CTTT----CCC--CCSEEEEE--SCGGGSCHH---HHHHHHHHHHHHTGGGGGGCEEEEEECE
T ss_pred EEeC--ccCC----CCC--CceEEEEc--ccccCCCHH---HHHHHHHHHHHhCCCCCCCcEEEEEEec
Confidence 4332 2221 111 23555554 446887653 223666666 56889 4 46666643
No 88
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=62.78 E-value=25 Score=32.84 Aligned_cols=98 Identities=12% Similarity=0.224 Sum_probs=56.1
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccC
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQ 333 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~ 333 (514)
.-.|+|+|.|. | .+...|+.+ + .++|||+.+...++.+.+++. + .+|.. ..++++.
T Consensus 51 ~~~vLDiGcG~----G----~~~~~l~~~--~----~~v~gvD~s~~~~~~a~~~~~------~--~~~~~--~d~~~~~ 106 (263)
T 3pfg_A 51 AASLLDVACGT----G----MHLRHLADS--F----GTVEGLELSADMLAIARRRNP------D--AVLHH--GDMRDFS 106 (263)
T ss_dssp CCEEEEETCTT----S----HHHHHHTTT--S----SEEEEEESCHHHHHHHHHHCT------T--SEEEE--CCTTTCC
T ss_pred CCcEEEeCCcC----C----HHHHHHHHc--C----CeEEEEECCHHHHHHHHhhCC------C--CEEEE--CChHHCC
Confidence 45799999753 3 345556655 2 279999988777766655432 2 33332 2233322
Q ss_pred cccccccCCcEEEEEecc-ccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 040125 334 TKDIKVLENEVLVVNSIL-QLHCVVKESRGALNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 334 ~~~l~~~~~EaLaVN~~~-~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE 383 (514)
. ++..=+|-|.+ .|||+.+. .....+|+.+ +.|+|.-+++++
T Consensus 107 -----~-~~~fD~v~~~~~~l~~~~~~--~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 107 -----L-GRRFSAVTCMFSSIGHLAGQ--AELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp -----C-SCCEEEEEECTTGGGGSCHH--HHHHHHHHHHHHTEEEEEEEEEC
T ss_pred -----c-cCCcCEEEEcCchhhhcCCH--HHHHHHHHHHHHhcCCCcEEEEE
Confidence 1 33333444555 67887542 1234566655 568999777775
No 89
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=62.22 E-value=80 Score=28.48 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=18.0
Q ss_pred ccchhhHHHHHhcCCceeccCC
Q 040125 449 HERVDQWRRRMSRAGFQAAPMK 470 (514)
Q Consensus 449 hE~~~~Wr~Rm~~AGF~~v~ls 470 (514)
.-+.+.|...++.+||+.+.+.
T Consensus 165 ~~~~~~l~~~l~~~Gf~~~~~~ 186 (219)
T 1vlm_A 165 FFSTEELMDLMRKAGFEEFKVV 186 (219)
T ss_dssp CCCHHHHHHHHHHTTCEEEEEE
T ss_pred cCCHHHHHHHHHHCCCeEEEEe
Confidence 3467889999999999987764
No 90
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=61.74 E-value=66 Score=29.00 Aligned_cols=114 Identities=15% Similarity=0.148 Sum_probs=58.7
Q ss_pred ceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCC-ceEEEeecCCccc
Q 040125 253 SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGI-NLEFSVVESNLEN 331 (514)
Q Consensus 253 ~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgv-pFeF~~V~~~lE~ 331 (514)
..-.|+|+|.|. | .+...|+.+. | ..++|||+.+...++.+.+++. ..|+ .++|.. ..+.+
T Consensus 41 ~~~~vLDiGcG~----G----~~~~~la~~~---p-~~~v~gvD~s~~~l~~a~~~~~----~~~~~~v~~~~--~d~~~ 102 (214)
T 1yzh_A 41 DNPIHVEVGSGK----G----AFVSGMAKQN---P-DINYIGIDIQKSVLSYALDKVL----EVGVPNIKLLW--VDGSD 102 (214)
T ss_dssp CCCEEEEESCTT----S----HHHHHHHHHC---T-TSEEEEEESCHHHHHHHHHHHH----HHCCSSEEEEE--CCSSC
T ss_pred CCCeEEEEccCc----C----HHHHHHHHHC---C-CCCEEEEEcCHHHHHHHHHHHH----HcCCCCEEEEe--CCHHH
Confidence 344699999753 3 2333455542 3 4799999998877777766543 3454 344433 22332
Q ss_pred cCcccccccCCcEEEEEecccccccccccc-chHHHHHHHHH-hcCCcEEEEEeec
Q 040125 332 LQTKDIKVLENEVLVVNSILQLHCVVKESR-GALNSVLQIIH-ELSPKVLVLVEQD 385 (514)
Q Consensus 332 l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~-~~~~~~L~~Ir-~L~PkVvvlvE~e 385 (514)
+. +.+.-..=+.|++|..........+.. .....+|..+. .|+|.-+++++.+
T Consensus 103 ~~-~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (214)
T 1yzh_A 103 LT-DYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 157 (214)
T ss_dssp GG-GTSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred HH-hhcCCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence 21 011111225677775432111000000 01245777665 5999977766544
No 91
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=60.01 E-value=51 Score=32.30 Aligned_cols=107 Identities=7% Similarity=0.077 Sum_probs=59.9
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCC-------ceEEEeec
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGI-------NLEFSVVE 326 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgv-------pFeF~~V~ 326 (514)
.-+|+|+|.|- |. .+..++.+. .-++|||+.+...++.+.++..+ .++ .++|....
T Consensus 49 ~~~VLDlGCG~----G~----~l~~~~~~~-----~~~v~GiD~S~~~l~~A~~~~~~----~~~~~~~~~~~~~f~~~d 111 (302)
T 2vdw_A 49 KRKVLAIDFGN----GA----DLEKYFYGE-----IALLVATDPDADAIARGNERYNK----LNSGIKTKYYKFDYIQET 111 (302)
T ss_dssp CCEEEETTCTT----TT----THHHHHHTT-----CSEEEEEESCHHHHHHHHHHHHH----HCC----CCCEEEEEECC
T ss_pred CCeEEEEecCC----cH----hHHHHHhcC-----CCeEEEEECCHHHHHHHHHHHHh----ccccccccccccchhhhh
Confidence 45899999753 32 122233322 14799999999888888776543 232 24564421
Q ss_pred C--Cc--cccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 040125 327 S--NL--ENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLV 382 (514)
Q Consensus 327 ~--~l--E~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlv 382 (514)
. .. +++.. ...++..=+|.|++.||++.+.. ....+|+.+ +.|+|.-++++
T Consensus 112 ~~~d~~~~~l~~---~~~~~~FD~V~~~~~lhy~~~~~--~~~~~l~~~~r~LkpGG~~i~ 167 (302)
T 2vdw_A 112 IRSDTFVSSVRE---VFYFGKFNIIDWQFAIHYSFHPR--HYATVMNNLSELTASGGKVLI 167 (302)
T ss_dssp TTSSSHHHHHHT---TCCSSCEEEEEEESCGGGTCSTT--THHHHHHHHHHHEEEEEEEEE
T ss_pred cccchhhhhhhc---cccCCCeeEEEECchHHHhCCHH--HHHHHHHHHHHHcCCCCEEEE
Confidence 1 00 11110 01234444667888999875422 235666666 66999855444
No 92
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=58.99 E-value=1e+02 Score=27.89 Aligned_cols=64 Identities=17% Similarity=0.210 Sum_probs=40.8
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc--e
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN--L 320 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp--F 320 (514)
..+++.+.-...-.|+|+|.|. | .+...|+.+ + -++|+|+.+.+.++.+.++ ++..|++ +
T Consensus 45 ~~~l~~l~~~~~~~vLDlGcG~----G----~~~~~la~~-~-----~~v~~vD~s~~~~~~a~~~----~~~~g~~~~v 106 (204)
T 3njr_A 45 ALTLAALAPRRGELLWDIGGGS----G----SVSVEWCLA-G-----GRAITIEPRADRIENIQKN----IDTYGLSPRM 106 (204)
T ss_dssp HHHHHHHCCCTTCEEEEETCTT----C----HHHHHHHHT-T-----CEEEEEESCHHHHHHHHHH----HHHTTCTTTE
T ss_pred HHHHHhcCCCCCCEEEEecCCC----C----HHHHHHHHc-C-----CEEEEEeCCHHHHHHHHHH----HHHcCCCCCE
Confidence 3455666555556799999643 3 234456665 2 4899999988777766655 4556776 5
Q ss_pred EEEe
Q 040125 321 EFSV 324 (514)
Q Consensus 321 eF~~ 324 (514)
+|..
T Consensus 107 ~~~~ 110 (204)
T 3njr_A 107 RAVQ 110 (204)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5543
No 93
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=58.83 E-value=27 Score=34.04 Aligned_cols=53 Identities=17% Similarity=0.141 Sum_probs=35.7
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHH
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDEL 309 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL 309 (514)
..|++.+.-...-+|+|+|.| .| .+-..|+.+ + -++|||+.+...++...+++
T Consensus 35 ~~il~~l~l~~g~~VLDlGcG----tG----~~a~~La~~-g-----~~V~gvD~S~~ml~~Ar~~~ 87 (261)
T 3iv6_A 35 ENDIFLENIVPGSTVAVIGAS----TR----FLIEKALER-G-----ASVTVFDFSQRMCDDLAEAL 87 (261)
T ss_dssp HHHHHTTTCCTTCEEEEECTT----CH----HHHHHHHHT-T-----CEEEEEESCHHHHHHHHHHT
T ss_pred HHHHHhcCCCCcCEEEEEeCc----ch----HHHHHHHhc-C-----CEEEEEECCHHHHHHHHHHH
Confidence 445666655556689999964 23 355566765 2 37999999887777666654
No 94
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=58.32 E-value=44 Score=29.96 Aligned_cols=19 Identities=21% Similarity=0.462 Sum_probs=15.2
Q ss_pred chhhHHHHHhcCCceeccC
Q 040125 451 RVDQWRRRMSRAGFQAAPM 469 (514)
Q Consensus 451 ~~~~Wr~Rm~~AGF~~v~l 469 (514)
..+.|...++.+||+.+..
T Consensus 158 ~~~~~~~~l~~~Gf~~~~~ 176 (215)
T 2zfu_A 158 DVRTFLRAVTKLGFKIVSK 176 (215)
T ss_dssp CHHHHHHHHHHTTEEEEEE
T ss_pred CHHHHHHHHHHCCCEEEEE
Confidence 5678888899999988654
No 95
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=57.78 E-value=50 Score=29.36 Aligned_cols=55 Identities=29% Similarity=0.358 Sum_probs=37.3
Q ss_pred hhhHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHH
Q 040125 240 VANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDE 308 (514)
Q Consensus 240 tANqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~r 308 (514)
...+.|++.+.....-+|+|+|.|. | .+...|+.+ + .++|||+.+...++.+.++
T Consensus 39 ~~~~~~~~~~~~~~~~~vLdiG~G~----G----~~~~~l~~~-~-----~~v~~vD~s~~~~~~a~~~ 93 (227)
T 3e8s_A 39 VTDQAILLAILGRQPERVLDLGCGE----G----WLLRALADR-G-----IEAVGVDGDRTLVDAARAA 93 (227)
T ss_dssp THHHHHHHHHHHTCCSEEEEETCTT----C----HHHHHHHTT-T-----CEEEEEESCHHHHHHHHHT
T ss_pred cccHHHHHHhhcCCCCEEEEeCCCC----C----HHHHHHHHC-C-----CEEEEEcCCHHHHHHHHHh
Confidence 3556777877766668999999753 3 344666665 2 3899999887666555443
No 96
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=57.67 E-value=15 Score=38.93 Aligned_cols=114 Identities=18% Similarity=0.139 Sum_probs=61.7
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc--e
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN--L 320 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp--F 320 (514)
.+|++.+...+.-+|+|+|-|- | .+...++.+ | ..++|||+.+. .++.+ .+.++..|+. .
T Consensus 148 ~~il~~l~~~~~~~VLDiGcGt----G----~la~~la~~----~-~~~V~gvD~s~-~l~~A----~~~~~~~gl~~~v 209 (480)
T 3b3j_A 148 RAILQNHTDFKDKIVLDVGCGS----G----ILSFFAAQA----G-ARKIYAVEAST-MAQHA----EVLVKSNNLTDRI 209 (480)
T ss_dssp HHHHHTGGGTTTCEEEEESCST----T----HHHHHHHHT----T-CSEEEEEECHH-HHHHH----HHHHHHTTCTTTE
T ss_pred HHHHHhhhhcCCCEEEEecCcc----c----HHHHHHHHc----C-CCEEEEEEcHH-HHHHH----HHHHHHcCCCCcE
Confidence 4666666544556999999643 3 244456654 2 36999999764 44333 3334555663 4
Q ss_pred EEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEee
Q 040125 321 EFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLVEQ 384 (514)
Q Consensus 321 eF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkVvvlvE~ 384 (514)
+|. ...++++... ..=++|+.|.+ ++++..+ ...+.+....+-|+|.-+++.+.
T Consensus 210 ~~~--~~d~~~~~~~----~~fD~Ivs~~~--~~~~~~e--~~~~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 210 VVI--PGKVEEVSLP----EQVDIIISEPM--GYMLFNE--RMLESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp EEE--ESCTTTCCCS----SCEEEEECCCC--HHHHTCH--HHHHHHHHGGGGEEEEEEEESCE
T ss_pred EEE--ECchhhCccC----CCeEEEEEeCc--hHhcCcH--HHHHHHHHHHHhcCCCCEEEEEe
Confidence 443 3334443211 11134444433 3555433 12344555557799997777543
No 97
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=57.16 E-value=30 Score=32.47 Aligned_cols=112 Identities=24% Similarity=0.243 Sum_probs=57.3
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEE
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEF 322 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF 322 (514)
+.|++.+.-...-+|+|+|.|. | .| ...|+. | ..++|||+.+...++. |+... ..+|
T Consensus 24 ~~l~~~~~~~~~~~vLDiGcG~----G-~~---~~~l~~-----~-~~~v~gvD~s~~~~~~--------a~~~~-~~~~ 80 (261)
T 3ege_A 24 NAIINLLNLPKGSVIADIGAGT----G-GY---SVALAN-----Q-GLFVYAVEPSIVMRQQ--------AVVHP-QVEW 80 (261)
T ss_dssp HHHHHHHCCCTTCEEEEETCTT----S-HH---HHHHHT-----T-TCEEEEECSCHHHHHS--------SCCCT-TEEE
T ss_pred HHHHHHhCCCCCCEEEEEcCcc----c-HH---HHHHHh-----C-CCEEEEEeCCHHHHHH--------HHhcc-CCEE
Confidence 4455656545567899999753 3 23 344443 2 3699999987644432 22222 4444
Q ss_pred EeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCc-EEEEEeecCCCCC
Q 040125 323 SVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPK-VLVLVEQDSSHNG 390 (514)
Q Consensus 323 ~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pk-VvvlvE~ea~~ns 390 (514)
.. ..++++. ..++..=+|-|...|||+.+ ...+|+.+ +.|+ . .+++++.+.....
T Consensus 81 ~~--~d~~~~~-----~~~~~fD~v~~~~~l~~~~~-----~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~ 137 (261)
T 3ege_A 81 FT--GYAENLA-----LPDKSVDGVISILAIHHFSH-----LEKSFQEMQRIIR-DGTIVLLTFDIRLAQ 137 (261)
T ss_dssp EC--CCTTSCC-----SCTTCBSEEEEESCGGGCSS-----HHHHHHHHHHHBC-SSCEEEEEECGGGCC
T ss_pred EE--CchhhCC-----CCCCCEeEEEEcchHhhccC-----HHHHHHHHHHHhC-CcEEEEEEcCCchhH
Confidence 33 2233332 22232222334445688733 23444444 5577 6 3666665544333
No 98
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=56.15 E-value=57 Score=32.51 Aligned_cols=104 Identities=17% Similarity=0.219 Sum_probs=57.7
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc--eEEEeecCCccc
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN--LEFSVVESNLEN 331 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp--FeF~~V~~~lE~ 331 (514)
.-.|+|+|-|- | .+...|+.+ + .-+++||+.+ +.++.+.+ .++..|++ .+|.. ..+++
T Consensus 67 ~~~VLDvGcG~----G----~~~~~la~~----g-~~~v~gvD~s-~~l~~a~~----~~~~~~~~~~v~~~~--~d~~~ 126 (349)
T 3q7e_A 67 DKVVLDVGSGT----G----ILCMFAAKA----G-ARKVIGIECS-SISDYAVK----IVKANKLDHVVTIIK--GKVEE 126 (349)
T ss_dssp TCEEEEESCTT----S----HHHHHHHHT----T-CSEEEEEECS-THHHHHHH----HHHHTTCTTTEEEEE--SCTTT
T ss_pred CCEEEEEeccc----h----HHHHHHHHC----C-CCEEEEECcH-HHHHHHHH----HHHHcCCCCcEEEEE--CcHHH
Confidence 34799999753 3 244556665 1 3599999988 45544443 34556665 45543 34444
Q ss_pred cCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEee
Q 040125 332 LQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVEQ 384 (514)
Q Consensus 332 l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE~ 384 (514)
+... ...=++|+.+++. +++..+ ...+.+|..+ |-|+|.-+++.+.
T Consensus 127 ~~~~---~~~fD~Iis~~~~--~~l~~~--~~~~~~l~~~~r~LkpgG~li~~~ 173 (349)
T 3q7e_A 127 VELP---VEKVDIIISEWMG--YCLFYE--SMLNTVLHARDKWLAPDGLIFPDR 173 (349)
T ss_dssp CCCS---SSCEEEEEECCCB--BTBTBT--CCHHHHHHHHHHHEEEEEEEESCE
T ss_pred ccCC---CCceEEEEEcccc--ccccCc--hhHHHHHHHHHHhCCCCCEEcccc
Confidence 4211 1111355554433 333332 2356788877 7799997776443
No 99
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=56.05 E-value=35 Score=33.30 Aligned_cols=101 Identities=20% Similarity=0.286 Sum_probs=59.4
Q ss_pred HhhCCCccchh-HhhhHH----HHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHH
Q 040125 228 YEICPHIQFGH-FVANSS----ILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKF 302 (514)
Q Consensus 228 ~e~sP~~kfah-ftANqA----ILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l 302 (514)
|.+.|=-+++. |..|+. |++++.-... +|+|+|-|.| .|-..|+.+. -++|+|+.+.+.+
T Consensus 17 ~~~~~~k~~GQnfL~d~~i~~~Iv~~~~~~~~-~VLEIG~G~G--------~lt~~L~~~~------~~V~avEid~~~~ 81 (271)
T 3fut_A 17 HGLFADKRFGQNFLVSEAHLRRIVEAARPFTG-PVFEVGPGLG--------ALTRALLEAG------AEVTAIEKDLRLR 81 (271)
T ss_dssp TTCCCSTTSSCCEECCHHHHHHHHHHHCCCCS-CEEEECCTTS--------HHHHHHHHTT------CCEEEEESCGGGH
T ss_pred cCCCccccCCccccCCHHHHHHHHHhcCCCCC-eEEEEeCchH--------HHHHHHHHcC------CEEEEEECCHHHH
Confidence 44556666663 544544 5555555556 9999996533 4667788762 2799999888777
Q ss_pred HHHHHHHHHHHHhcCCceEEEeecCCccccCcccccccCCcEEEEEecccc
Q 040125 303 QSIGDELKDYAKTYGINLEFSVVESNLENLQTKDIKVLENEVLVVNSILQL 353 (514)
Q Consensus 303 ~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~L 353 (514)
+...+++. +-.+++ +.....+++...+ .....|+-|..+..
T Consensus 82 ~~l~~~~~------~~~v~v--i~~D~l~~~~~~~--~~~~~iv~NlPy~i 122 (271)
T 3fut_A 82 PVLEETLS------GLPVRL--VFQDALLYPWEEV--PQGSLLVANLPYHI 122 (271)
T ss_dssp HHHHHHTT------TSSEEE--EESCGGGSCGGGS--CTTEEEEEEECSSC
T ss_pred HHHHHhcC------CCCEEE--EECChhhCChhhc--cCccEEEecCcccc
Confidence 76666543 123333 3333434433222 13457788887653
No 100
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=55.81 E-value=1.1e+02 Score=26.92 Aligned_cols=108 Identities=15% Similarity=0.145 Sum_probs=54.4
Q ss_pred eEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCC--ceEEEeecCCcccc
Q 040125 255 VHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGI--NLEFSVVESNLENL 332 (514)
Q Consensus 255 VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgv--pFeF~~V~~~lE~l 332 (514)
-.|+|+|.| .| .+...|+.+-+ | .-++|||+.+...++.+.+++ +..|+ .++|. ....+++
T Consensus 24 ~~vLDlGcG----~G----~~~~~l~~~~~--~-~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~v~~~--~~d~~~~ 86 (197)
T 3eey_A 24 DTVVDATCG----NG----NDTAFLASLVG--E-NGRVFGFDIQDKAIANTTKKL----TDLNLIDRVTLI--KDGHQNM 86 (197)
T ss_dssp CEEEESCCT----TS----HHHHHHHHHHC--T-TCEEEEECSCHHHHHHHHHHH----HHTTCGGGEEEE--CSCGGGG
T ss_pred CEEEEcCCC----CC----HHHHHHHHHhC--C-CCEEEEEECCHHHHHHHHHHH----HHcCCCCCeEEE--ECCHHHH
Confidence 479999964 33 23334554422 2 249999999887777776654 34455 34443 3333333
Q ss_pred CcccccccCCcEEEEEeccc---cccccccccchHHHHHH-HHHhcCCcEEEEE
Q 040125 333 QTKDIKVLENEVLVVNSILQ---LHCVVKESRGALNSVLQ-IIHELSPKVLVLV 382 (514)
Q Consensus 333 ~~~~l~~~~~EaLaVN~~~~---Lh~l~~es~~~~~~~L~-~Ir~L~PkVvvlv 382 (514)
... +. ..=+.|+.|..+. -|+..... .....+|+ ..+-|+|.-.+++
T Consensus 87 ~~~-~~-~~fD~v~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~Lk~gG~l~~ 137 (197)
T 3eey_A 87 DKY-ID-CPVKAVMFNLGYLPSGDHSISTRP-ETTIQALSKAMELLVTGGIITV 137 (197)
T ss_dssp GGT-CC-SCEEEEEEEESBCTTSCTTCBCCH-HHHHHHHHHHHHHEEEEEEEEE
T ss_pred hhh-cc-CCceEEEEcCCcccCcccccccCc-ccHHHHHHHHHHhCcCCCEEEE
Confidence 210 00 1225666676551 01111111 11223444 4466899854443
No 101
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=55.74 E-value=89 Score=28.13 Aligned_cols=42 Identities=12% Similarity=0.025 Sum_probs=28.5
Q ss_pred ceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHH
Q 040125 253 SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDE 308 (514)
Q Consensus 253 ~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~r 308 (514)
..-+|+|+|.|- | .+...|+.+ | .++|||+.+...++...++
T Consensus 22 ~~~~vLD~GCG~----G----~~~~~la~~-g-----~~V~gvD~S~~~l~~a~~~ 63 (203)
T 1pjz_A 22 PGARVLVPLCGK----S----QDMSWLSGQ-G-----YHVVGAELSEAAVERYFTE 63 (203)
T ss_dssp TTCEEEETTTCC----S----HHHHHHHHH-C-----CEEEEEEECHHHHHHHHHH
T ss_pred CCCEEEEeCCCC----c----HhHHHHHHC-C-----CeEEEEeCCHHHHHHHHHH
Confidence 445899999643 2 233457765 2 4899999998777766554
No 102
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=55.52 E-value=55 Score=28.31 Aligned_cols=106 Identities=15% Similarity=0.097 Sum_probs=57.6
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc--eEEEeecCCccc
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN--LEFSVVESNLEN 331 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp--FeF~~V~~~lE~ 331 (514)
.-.|+|+|-|.| .+...++.++ .-++|||+.+...++.+.+++ +..|++ .+|.. ..+.+
T Consensus 32 ~~~vLDlGcG~G--------~~~~~l~~~~-----~~~v~~vD~~~~~~~~a~~~~----~~~~~~~~~~~~~--~d~~~ 92 (177)
T 2esr_A 32 GGRVLDLFAGSG--------GLAIEAVSRG-----MSAAVLVEKNRKAQAIIQDNI----IMTKAENRFTLLK--MEAER 92 (177)
T ss_dssp SCEEEEETCTTC--------HHHHHHHHTT-----CCEEEEECCCHHHHHHHHHHH----HTTTCGGGEEEEC--SCHHH
T ss_pred CCeEEEeCCCCC--------HHHHHHHHcC-----CCEEEEEECCHHHHHHHHHHH----HHcCCCCceEEEE--CcHHH
Confidence 347999997533 2233455541 258999998887776666554 455664 44432 22222
Q ss_pred cCcccccccCCcEEEEEeccccccccccccchHHHHHHHH---HhcCCcEEEEEeecCCC
Q 040125 332 LQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII---HELSPKVLVLVEQDSSH 388 (514)
Q Consensus 332 l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I---r~L~PkVvvlvE~ea~~ 388 (514)
..+. +. ..=+.|+.|..+ |. .....++..+ +-|+|.-+++++.....
T Consensus 93 ~~~~-~~-~~fD~i~~~~~~--~~------~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 93 AIDC-LT-GRFDLVFLDPPY--AK------ETIVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp HHHH-BC-SCEEEEEECCSS--HH------HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred hHHh-hc-CCCCEEEECCCC--Cc------chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 1110 00 111466666554 21 1124555555 66899977777655443
No 103
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=53.85 E-value=1.1e+02 Score=27.11 Aligned_cols=105 Identities=11% Similarity=0.079 Sum_probs=57.4
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc-eE
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN-LE 321 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp-Fe 321 (514)
..+++.+.-...-+|+|+|.|. |. +...|+.+ + -++|+|+.+...++.+.+++.+ .|++ .+
T Consensus 67 ~~~~~~l~~~~~~~vLdiG~G~----G~----~~~~la~~-~-----~~v~~vD~~~~~~~~a~~~~~~----~~~~~v~ 128 (210)
T 3lbf_A 67 ARMTELLELTPQSRVLEIGTGS----GY----QTAILAHL-V-----QHVCSVERIKGLQWQARRRLKN----LDLHNVS 128 (210)
T ss_dssp HHHHHHTTCCTTCEEEEECCTT----SH----HHHHHHHH-S-----SEEEEEESCHHHHHHHHHHHHH----TTCCSEE
T ss_pred HHHHHhcCCCCCCEEEEEcCCC----CH----HHHHHHHh-C-----CEEEEEecCHHHHHHHHHHHHH----cCCCceE
Confidence 3445556555667899999753 32 22335544 2 4899999988777777666543 4554 44
Q ss_pred EEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEE
Q 040125 322 FSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLV 382 (514)
Q Consensus 322 F~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkVvvlv 382 (514)
|.. ....+..+. -..=+.|+++. .+|++.+ ...+.|+|.-.+++
T Consensus 129 ~~~--~d~~~~~~~---~~~~D~i~~~~--~~~~~~~----------~~~~~L~pgG~lv~ 172 (210)
T 3lbf_A 129 TRH--GDGWQGWQA---RAPFDAIIVTA--APPEIPT----------ALMTQLDEGGILVL 172 (210)
T ss_dssp EEE--SCGGGCCGG---GCCEEEEEESS--BCSSCCT----------HHHHTEEEEEEEEE
T ss_pred EEE--CCcccCCcc---CCCccEEEEcc--chhhhhH----------HHHHhcccCcEEEE
Confidence 433 222221111 11114555543 4477654 24577899744444
No 104
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=53.55 E-value=16 Score=36.97 Aligned_cols=109 Identities=18% Similarity=0.233 Sum_probs=60.7
Q ss_pred HHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEE
Q 040125 244 SILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFS 323 (514)
Q Consensus 244 AILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~ 323 (514)
.|++.+.-...-.|+|+|-+. |. ++..|+.+ + .++|||+.+...++ .|+..|++..-.
T Consensus 98 ~l~~~~~~~~~~~VLDiGcG~----G~----~~~~l~~~-g-----~~v~gvD~s~~~~~--------~a~~~~~~~~~~ 155 (416)
T 4e2x_A 98 DFLATELTGPDPFIVEIGCND----GI----MLRTIQEA-G-----VRHLGFEPSSGVAA--------KAREKGIRVRTD 155 (416)
T ss_dssp HHHHTTTCSSSCEEEEETCTT----TT----THHHHHHT-T-----CEEEEECCCHHHHH--------HHHTTTCCEECS
T ss_pred HHHHHhCCCCCCEEEEecCCC----CH----HHHHHHHc-C-----CcEEEECCCHHHHH--------HHHHcCCCccee
Confidence 445555444567899999753 33 55666654 2 38999998875554 344556654321
Q ss_pred eecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 040125 324 VVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 324 ~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE 383 (514)
.+ ..-..+.+...++..=+|-+...|||+.+ ...+|+.+ +-|+|.-+++++
T Consensus 156 ~~----~~~~~~~l~~~~~~fD~I~~~~vl~h~~d-----~~~~l~~~~r~LkpgG~l~i~ 207 (416)
T 4e2x_A 156 FF----EKATADDVRRTEGPANVIYAANTLCHIPY-----VQSVLEGVDALLAPDGVFVFE 207 (416)
T ss_dssp CC----SHHHHHHHHHHHCCEEEEEEESCGGGCTT-----HHHHHHHHHHHEEEEEEEEEE
T ss_pred ee----chhhHhhcccCCCCEEEEEECChHHhcCC-----HHHHHHHHHHHcCCCeEEEEE
Confidence 11 11111122222343334445566788853 34566666 568998666654
No 105
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=52.95 E-value=59 Score=28.93 Aligned_cols=106 Identities=14% Similarity=0.194 Sum_probs=56.2
Q ss_pred hHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceE
Q 040125 242 NSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLE 321 (514)
Q Consensus 242 NqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFe 321 (514)
.+.|++.+. ...-+|+|+|.+. | .+...|+.+ + .++|+|+.+...++...++ .. +
T Consensus 22 ~~~l~~~~~-~~~~~vLdiG~G~----G----~~~~~l~~~----~--~~~~~~D~~~~~~~~~~~~--------~~--~ 76 (230)
T 3cc8_A 22 NPNLLKHIK-KEWKEVLDIGCSS----G----ALGAAIKEN----G--TRVSGIEAFPEAAEQAKEK--------LD--H 76 (230)
T ss_dssp CHHHHTTCC-TTCSEEEEETCTT----S----HHHHHHHTT----T--CEEEEEESSHHHHHHHHTT--------SS--E
T ss_pred HHHHHHHhc-cCCCcEEEeCCCC----C----HHHHHHHhc----C--CeEEEEeCCHHHHHHHHHh--------CC--c
Confidence 355666665 5567899999653 2 344556665 2 4899999887655444332 22 2
Q ss_pred EEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 040125 322 FSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLV 382 (514)
Q Consensus 322 F~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlv 382 (514)
|. ...+++.. +...++..=+|-+...|||+.+ ...+|+.+ +.|+|.-.+++
T Consensus 77 ~~--~~d~~~~~---~~~~~~~fD~v~~~~~l~~~~~-----~~~~l~~~~~~L~~gG~l~~ 128 (230)
T 3cc8_A 77 VV--LGDIETMD---MPYEEEQFDCVIFGDVLEHLFD-----PWAVIEKVKPYIKQNGVILA 128 (230)
T ss_dssp EE--ESCTTTCC---CCSCTTCEEEEEEESCGGGSSC-----HHHHHHHTGGGEEEEEEEEE
T ss_pred EE--EcchhhcC---CCCCCCccCEEEECChhhhcCC-----HHHHHHHHHHHcCCCCEEEE
Confidence 32 22232211 1122232222224455677753 24566666 55789744444
No 106
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=52.94 E-value=53 Score=29.64 Aligned_cols=102 Identities=19% Similarity=0.222 Sum_probs=55.0
Q ss_pred eEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCC-ceEEEeecCCccccC
Q 040125 255 VHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGI-NLEFSVVESNLENLQ 333 (514)
Q Consensus 255 VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgv-pFeF~~V~~~lE~l~ 333 (514)
-+|+|+|-|. |. .+ +. ++.+ + . -+||+|+.+...++.+.+++ +..|+ ..+|.. ....+..
T Consensus 56 ~~vLDlgcG~----G~--~~-~~-l~~~-~-~---~~V~~vD~s~~~l~~a~~~~----~~~~~~~v~~~~--~D~~~~~ 116 (202)
T 2fpo_A 56 AQCLDCFAGS----GA--LG-LE-ALSR-Y-A---AGATLIEMDRAVSQQLIKNL----ATLKAGNARVVN--SNAMSFL 116 (202)
T ss_dssp CEEEETTCTT----CH--HH-HH-HHHT-T-C---SEEEEECSCHHHHHHHHHHH----HHTTCCSEEEEC--SCHHHHH
T ss_pred CeEEEeCCCc----CH--HH-HH-HHhc-C-C---CEEEEEECCHHHHHHHHHHH----HHcCCCcEEEEE--CCHHHHH
Confidence 4799999653 32 22 22 2333 2 1 28999999887777776654 34455 344432 2222211
Q ss_pred cccccccCCcEEEEEeccccccccccccchHHHHHHHHHh---cCCcEEEEEeec
Q 040125 334 TKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHE---LSPKVLVLVEQD 385 (514)
Q Consensus 334 ~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~---L~PkVvvlvE~e 385 (514)
+. .-..=+.|++|..+ |. +....+++.+++ |+|.-+++++..
T Consensus 117 ~~--~~~~fD~V~~~~p~--~~------~~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 117 AQ--KGTPHNIVFVDPPF--RR------GLLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp SS--CCCCEEEEEECCSS--ST------TTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hh--cCCCCCEEEECCCC--CC------CcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 10 00111466666554 21 123567777776 999876666544
No 107
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=52.88 E-value=64 Score=28.70 Aligned_cols=103 Identities=17% Similarity=0.054 Sum_probs=52.8
Q ss_pred HHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEe
Q 040125 245 ILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSV 324 (514)
Q Consensus 245 ILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~ 324 (514)
+++.+.. +.-.|+|+|.+. |. +...| + .-++|+|+.+...++.+.+++ -+ ++|.
T Consensus 29 ~l~~~~~-~~~~vLdiG~G~----G~----~~~~l----~----~~~v~~vD~s~~~~~~a~~~~------~~--~~~~- 82 (211)
T 2gs9_A 29 ALKGLLP-PGESLLEVGAGT----GY----WLRRL----P----YPQKVGVEPSEAMLAVGRRRA------PE--ATWV- 82 (211)
T ss_dssp HHHTTCC-CCSEEEEETCTT----CH----HHHHC----C----CSEEEEECCCHHHHHHHHHHC------TT--SEEE-
T ss_pred HHHHhcC-CCCeEEEECCCC----CH----hHHhC----C----CCeEEEEeCCHHHHHHHHHhC------CC--cEEE-
Confidence 4444433 456899999753 32 22223 1 128999998877766665544 12 3332
Q ss_pred ecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcE-EEEEee
Q 040125 325 VESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKV-LVLVEQ 384 (514)
Q Consensus 325 V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkV-vvlvE~ 384 (514)
...++++. ..++..=+|-+...|||+.+ ...+|+.+ +-|+|.- +++++.
T Consensus 83 -~~d~~~~~-----~~~~~fD~v~~~~~l~~~~~-----~~~~l~~~~~~L~pgG~l~i~~~ 133 (211)
T 2gs9_A 83 -RAWGEALP-----FPGESFDVVLLFTTLEFVED-----VERVLLEARRVLRPGGALVVGVL 133 (211)
T ss_dssp -CCCTTSCC-----SCSSCEEEEEEESCTTTCSC-----HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -EcccccCC-----CCCCcEEEEEEcChhhhcCC-----HHHHHHHHHHHcCCCCEEEEEec
Confidence 22233322 22232222334456688743 23555554 6689984 444443
No 108
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=52.81 E-value=77 Score=27.87 Aligned_cols=45 Identities=13% Similarity=-0.009 Sum_probs=28.7
Q ss_pred ceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHH
Q 040125 253 SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELK 310 (514)
Q Consensus 253 ~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~ 310 (514)
..-.|+|+|.|. |. +...|+.+ | + . ++|+|+.+...++.+.+++.
T Consensus 42 ~~~~vLdiGcG~----G~----~~~~l~~~--~-~-~-~v~~~D~s~~~~~~a~~~~~ 86 (215)
T 2pxx_A 42 PEDRILVLGCGN----SA----LSYELFLG--G-F-P-NVTSVDYSSVVVAAMQACYA 86 (215)
T ss_dssp TTCCEEEETCTT----CS----HHHHHHHT--T-C-C-CEEEEESCHHHHHHHHHHTT
T ss_pred CCCeEEEECCCC----cH----HHHHHHHc--C-C-C-cEEEEeCCHHHHHHHHHhcc
Confidence 445799999753 32 23345544 2 2 2 89999998877777666543
No 109
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=52.17 E-value=88 Score=31.03 Aligned_cols=111 Identities=18% Similarity=0.134 Sum_probs=58.5
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCC--ce
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGI--NL 320 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgv--pF 320 (514)
++|++.+.-.+.-.|+|+|-|. | .+...++.+ | .-+++||+.+. .++.+.++ ++..|+ ..
T Consensus 54 ~~i~~~~~~~~~~~VLDiGcGt----G----~ls~~la~~-g----~~~v~gvD~s~-~~~~a~~~----~~~~~~~~~i 115 (340)
T 2fyt_A 54 DFIYQNPHIFKDKVVLDVGCGT----G----ILSMFAAKA-G----AKKVLGVDQSE-ILYQAMDI----IRLNKLEDTI 115 (340)
T ss_dssp HHHHHCGGGTTTCEEEEETCTT----S----HHHHHHHHT-T----CSEEEEEESST-HHHHHHHH----HHHTTCTTTE
T ss_pred HHHHhhhhhcCCCEEEEeeccC----c----HHHHHHHHc-C----CCEEEEEChHH-HHHHHHHH----HHHcCCCCcE
Confidence 4565555444455899999753 3 233455554 2 25899999874 55444433 334454 24
Q ss_pred EEEeecCCccccCcccccccCCcEEEEEec-cccccccccccchHHHHHHHH-HhcCCcEEEE
Q 040125 321 EFSVVESNLENLQTKDIKVLENEVLVVNSI-LQLHCVVKESRGALNSVLQII-HELSPKVLVL 381 (514)
Q Consensus 321 eF~~V~~~lE~l~~~~l~~~~~EaLaVN~~-~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvl 381 (514)
+| +....+++... ...=++|+.|.+ +.|++. ...+.+|..+ +-|+|.-.++
T Consensus 116 ~~--~~~d~~~~~~~---~~~~D~Ivs~~~~~~l~~~-----~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 116 TL--IKGKIEEVHLP---VEKVDVIISEWMGYFLLFE-----SMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EE--EESCTTTSCCS---CSCEEEEEECCCBTTBTTT-----CHHHHHHHHHHHHEEEEEEEE
T ss_pred EE--EEeeHHHhcCC---CCcEEEEEEcCchhhccCH-----HHHHHHHHHHHhhcCCCcEEE
Confidence 44 33334433211 111145555543 223321 2356677776 6789987666
No 110
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=52.09 E-value=72 Score=29.23 Aligned_cols=106 Identities=19% Similarity=0.180 Sum_probs=56.4
Q ss_pred HHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEE
Q 040125 244 SILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFS 323 (514)
Q Consensus 244 AILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~ 323 (514)
.+++.+.....-+|+|+|.|. |.- ...|+.+- | ..++|+|+.+...++...++ .-.++|.
T Consensus 24 ~l~~~~~~~~~~~vLdiG~G~----G~~----~~~l~~~~---~-~~~v~~~D~s~~~~~~a~~~--------~~~~~~~ 83 (259)
T 2p35_A 24 DLLAQVPLERVLNGYDLGCGP----GNS----TELLTDRY---G-VNVITGIDSDDDMLEKAADR--------LPNTNFG 83 (259)
T ss_dssp HHHTTCCCSCCSSEEEETCTT----THH----HHHHHHHH---C-TTSEEEEESCHHHHHHHHHH--------STTSEEE
T ss_pred HHHHhcCCCCCCEEEEecCcC----CHH----HHHHHHhC---C-CCEEEEEECCHHHHHHHHHh--------CCCcEEE
Confidence 445555444556899999753 332 23334332 2 25899999887766665554 1223443
Q ss_pred eecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 040125 324 VVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLV 382 (514)
Q Consensus 324 ~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlv 382 (514)
.. .++++. .++..=+|-+...||++.+ ...+|+.+ +.|+|.-.+++
T Consensus 84 ~~--d~~~~~------~~~~fD~v~~~~~l~~~~~-----~~~~l~~~~~~L~pgG~l~~ 130 (259)
T 2p35_A 84 KA--DLATWK------PAQKADLLYANAVFQWVPD-----HLAVLSQLMDQLESGGVLAV 130 (259)
T ss_dssp EC--CTTTCC------CSSCEEEEEEESCGGGSTT-----HHHHHHHHGGGEEEEEEEEE
T ss_pred EC--ChhhcC------ccCCcCEEEEeCchhhCCC-----HHHHHHHHHHhcCCCeEEEE
Confidence 32 233322 1222223334456688743 34566665 67899854444
No 111
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=51.00 E-value=1.3e+02 Score=26.58 Aligned_cols=109 Identities=15% Similarity=0.194 Sum_probs=59.1
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc-eE
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN-LE 321 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp-Fe 321 (514)
..+++.+.-...-.|+|+|.|. |. +...|+.+ + | ..++|+|+.+...++.+.+++.+ .|++ ++
T Consensus 30 ~~~l~~l~~~~~~~vLDiG~G~----G~----~~~~la~~--~-~-~~~v~~vD~s~~~~~~a~~~~~~----~~~~~v~ 93 (204)
T 3e05_A 30 AVTLSKLRLQDDLVMWDIGAGS----AS----VSIEASNL--M-P-NGRIFALERNPQYLGFIRDNLKK----FVARNVT 93 (204)
T ss_dssp HHHHHHTTCCTTCEEEEETCTT----CH----HHHHHHHH--C-T-TSEEEEEECCHHHHHHHHHHHHH----HTCTTEE
T ss_pred HHHHHHcCCCCCCEEEEECCCC----CH----HHHHHHHH--C-C-CCEEEEEeCCHHHHHHHHHHHHH----hCCCcEE
Confidence 3455556555567899999743 32 33445554 2 3 47999999988777777666543 3442 44
Q ss_pred EEeecCCc-cccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 040125 322 FSVVESNL-ENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 322 F~~V~~~l-E~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE 383 (514)
|.. ... +.+.. ...=++++++..+ + ....+|+.+ +.|+|.-.+++.
T Consensus 94 ~~~--~d~~~~~~~----~~~~D~i~~~~~~--~--------~~~~~l~~~~~~LkpgG~l~~~ 141 (204)
T 3e05_A 94 LVE--AFAPEGLDD----LPDPDRVFIGGSG--G--------MLEEIIDAVDRRLKSEGVIVLN 141 (204)
T ss_dssp EEE--CCTTTTCTT----SCCCSEEEESCCT--T--------CHHHHHHHHHHHCCTTCEEEEE
T ss_pred EEe--CChhhhhhc----CCCCCEEEECCCC--c--------CHHHHHHHHHHhcCCCeEEEEE
Confidence 432 222 11111 1122455554433 2 123555555 568998655553
No 112
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=50.78 E-value=76 Score=30.67 Aligned_cols=53 Identities=15% Similarity=0.152 Sum_probs=35.0
Q ss_pred eEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc--eEEEe
Q 040125 255 VHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN--LEFSV 324 (514)
Q Consensus 255 VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp--FeF~~ 324 (514)
-.|+|+|.|- | .+.-.|+.+ | ..++|||+.+...++.+.+++ +..|+. ++|..
T Consensus 125 ~~vLDlG~Gs----G----~~~~~la~~----~-~~~v~~vDis~~al~~A~~n~----~~~~l~~~v~~~~ 179 (284)
T 1nv8_A 125 KTVADIGTGS----G----AIGVSVAKF----S-DAIVFATDVSSKAVEIARKNA----ERHGVSDRFFVRK 179 (284)
T ss_dssp CEEEEESCTT----S----HHHHHHHHH----S-SCEEEEEESCHHHHHHHHHHH----HHTTCTTSEEEEE
T ss_pred CEEEEEeCch----h----HHHHHHHHC----C-CCEEEEEECCHHHHHHHHHHH----HHcCCCCceEEEE
Confidence 4799999753 3 233445554 2 379999999888887776654 455664 56643
No 113
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=50.43 E-value=1.2e+02 Score=31.30 Aligned_cols=109 Identities=19% Similarity=0.217 Sum_probs=61.0
Q ss_pred HHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc-eEEE
Q 040125 245 ILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN-LEFS 323 (514)
Q Consensus 245 ILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp-FeF~ 323 (514)
+++.+.-...-.|+|+|-|.| . +...||.+ .-+++||+.+.+.++.+.+++ +..|++ .+|.
T Consensus 278 ~~~~l~~~~~~~VLDlgcG~G----~----~~~~la~~------~~~V~gvD~s~~al~~A~~n~----~~~~~~~v~f~ 339 (433)
T 1uwv_A 278 ALEWLDVQPEDRVLDLFCGMG----N----FTLPLATQ------AASVVGVEGVPALVEKGQQNA----RLNGLQNVTFY 339 (433)
T ss_dssp HHHHHTCCTTCEEEEESCTTT----T----THHHHHTT------SSEEEEEESCHHHHHHHHHHH----HHTTCCSEEEE
T ss_pred HHHhhcCCCCCEEEECCCCCC----H----HHHHHHhh------CCEEEEEeCCHHHHHHHHHHH----HHcCCCceEEE
Confidence 334444333457999997533 2 22345554 148999999888777776654 455663 5554
Q ss_pred eecCCccc-cCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEe
Q 040125 324 VVESNLEN-LQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLVE 383 (514)
Q Consensus 324 ~V~~~lE~-l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkVvvlvE 383 (514)
. ..+++ +....+.-..=++|++|-.. .....+++.+..++|+.++.+.
T Consensus 340 ~--~d~~~~l~~~~~~~~~fD~Vv~dPPr----------~g~~~~~~~l~~~~p~~ivyvs 388 (433)
T 1uwv_A 340 H--ENLEEDVTKQPWAKNGFDKVLLDPAR----------AGAAGVMQQIIKLEPIRIVYVS 388 (433)
T ss_dssp E--CCTTSCCSSSGGGTTCCSEEEECCCT----------TCCHHHHHHHHHHCCSEEEEEE
T ss_pred E--CCHHHHhhhhhhhcCCCCEEEECCCC----------ccHHHHHHHHHhcCCCeEEEEE
Confidence 3 22322 11100111122566665322 1124688889999999887764
No 114
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=49.28 E-value=41 Score=32.43 Aligned_cols=48 Identities=25% Similarity=0.363 Sum_probs=30.1
Q ss_pred ceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHH
Q 040125 253 SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDY 312 (514)
Q Consensus 253 ~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~f 312 (514)
..-.|+|+|.+ .| .+...|+.+- ++ .+||||+.+...++.+.+++...
T Consensus 46 ~~~~VLDiGCG----~G----~~~~~la~~~--~~--~~v~gvDis~~~i~~A~~~~~~~ 93 (292)
T 3g07_A 46 RGRDVLDLGCN----VG----HLTLSIACKW--GP--SRMVGLDIDSRLIHSARQNIRHY 93 (292)
T ss_dssp TTSEEEEESCT----TC----HHHHHHHHHT--CC--SEEEEEESCHHHHHHHHHTC---
T ss_pred CCCcEEEeCCC----CC----HHHHHHHHHc--CC--CEEEEECCCHHHHHHHHHHHHhh
Confidence 34589999964 33 2334455543 22 59999999887777777665543
No 115
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=49.24 E-value=43 Score=35.94 Aligned_cols=106 Identities=21% Similarity=0.301 Sum_probs=60.5
Q ss_pred ceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcC-CceEEEeecCCccc
Q 040125 253 SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYG-INLEFSVVESNLEN 331 (514)
Q Consensus 253 ~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lg-vpFeF~~V~~~lE~ 331 (514)
+.+.|+|+|.|- | .|-..||.+ | -++|||+.+...++.... .|+.-| ++.+|.... .|+
T Consensus 66 ~~~~vLDvGCG~----G----~~~~~la~~-g-----a~V~giD~~~~~i~~a~~----~a~~~~~~~~~~~~~~--~~~ 125 (569)
T 4azs_A 66 RPLNVLDLGCAQ----G----FFSLSLASK-G-----ATIVGIDFQQENINVCRA----LAEENPDFAAEFRVGR--IEE 125 (569)
T ss_dssp SCCEEEEETCTT----S----HHHHHHHHT-T-----CEEEEEESCHHHHHHHHH----HHHTSTTSEEEEEECC--HHH
T ss_pred CCCeEEEECCCC----c----HHHHHHHhC-C-----CEEEEECCCHHHHHHHHH----HHHhcCCCceEEEECC--HHH
Confidence 347899999653 3 367788875 3 379999998877766543 355555 677776532 333
Q ss_pred cCcccccccCCcEEEEEecccccccccccc-chHHHHHHHHHhcCCcEEEEE
Q 040125 332 LQTKDIKVLENEVLVVNSILQLHCVVKESR-GALNSVLQIIHELSPKVLVLV 382 (514)
Q Consensus 332 l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~-~~~~~~L~~Ir~L~PkVvvlv 382 (514)
+.. ...++..=||-|+--|||+.+... .....|++.|+.- |+.++++
T Consensus 126 ~~~---~~~~~~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~-~~~~~~~ 173 (569)
T 4azs_A 126 VIA---ALEEGEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADV-TQAVILE 173 (569)
T ss_dssp HHH---HCCTTSCSEEEEESCHHHHHHHHCHHHHHHHHHHHHHH-SSEEEEE
T ss_pred Hhh---hccCCCccEEEECcchhcCCCHHHHHHHHHHHHHhccc-cceeeEE
Confidence 311 112333335667778899976421 1123455544332 3444443
No 116
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=49.20 E-value=23 Score=29.50 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=32.4
Q ss_pred CCCCcEEEeEecCCh----hHHHHHHHHHHHHHHhcCCceEEE
Q 040125 285 QPPRRLRITAVGLCV----EKFQSIGDELKDYAKTYGINLEFS 323 (514)
Q Consensus 285 gpP~~LRIT~I~~~~----~~l~etg~rL~~fA~~lgvpFeF~ 323 (514)
||| .-|||...++. ..|+++.+.+.+..+..|..|+|+
T Consensus 50 gaP-~Y~i~~~~~D~k~ge~~L~~ai~~i~~~i~~~gG~~~v~ 91 (93)
T 2qn6_B 50 GAP-RYRVDVVGTNPKEASEALNQIISNLIKIGKEENVDISVV 91 (93)
T ss_dssp STT-EEEEEEEESCHHHHHHHHHHHHHHHHHHHHHTTEEEEEC
T ss_pred cCC-eEEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 577 79999988873 478899999999999999999885
No 117
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=48.30 E-value=1.7e+02 Score=29.70 Aligned_cols=119 Identities=20% Similarity=0.244 Sum_probs=65.6
Q ss_pred hhHHHHhhhc------CCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHH
Q 040125 241 ANSSILEAFE------GESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAK 314 (514)
Q Consensus 241 ANqAILEA~~------g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~ 314 (514)
..+.+++.+. ..+.-+|+|+|.|.| . +...|+.+ + .+||+|+.+...++.+.+++ +
T Consensus 215 ~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G----~----~~~~la~~-g-----~~V~gvDis~~al~~A~~n~----~ 276 (381)
T 3dmg_A 215 ASLLLLEALQERLGPEGVRGRQVLDLGAGYG----A----LTLPLARM-G-----AEVVGVEDDLASVLSLQKGL----E 276 (381)
T ss_dssp HHHHHHHHHHHHHCTTTTTTCEEEEETCTTS----T----THHHHHHT-T-----CEEEEEESBHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHhhcccCCCCCEEEEEeeeCC----H----HHHHHHHc-C-----CEEEEEECCHHHHHHHHHHH----H
Confidence 3455556553 224458999997543 2 33344554 2 38999998887777776654 4
Q ss_pred hcCCceEEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHH-HHhcCCcEEEEEee
Q 040125 315 TYGINLEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQI-IHELSPKVLVLVEQ 384 (514)
Q Consensus 315 ~lgvpFeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~-Ir~L~PkVvvlvE~ 384 (514)
..|+..+|.. ..+.+.... -..=++|+.|..+ |+...........+++. .+.|+|.-.+++..
T Consensus 277 ~~~~~v~~~~--~D~~~~~~~---~~~fD~Ii~npp~--~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~ 340 (381)
T 3dmg_A 277 ANALKAQALH--SDVDEALTE---EARFDIIVTNPPF--HVGGAVILDVAQAFVNVAAARLRPGGVFFLVS 340 (381)
T ss_dssp HTTCCCEEEE--CSTTTTSCT---TCCEEEEEECCCC--CTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HcCCCeEEEE--cchhhcccc---CCCeEEEEECCch--hhcccccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence 4566656543 223322111 0122466766665 55322222234455554 46789986666553
No 118
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=48.07 E-value=1.2e+02 Score=29.81 Aligned_cols=112 Identities=16% Similarity=0.216 Sum_probs=56.7
Q ss_pred HHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc--eE
Q 040125 244 SILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN--LE 321 (514)
Q Consensus 244 AILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp--Fe 321 (514)
+|++...-.+.-+|+|+|-|- |. |...++.+ | .-+++||+.+ +.++.+.++ ++..|+. .+
T Consensus 29 ai~~~~~~~~~~~VLDiGcGt----G~----ls~~la~~-g----~~~v~~vD~s-~~~~~a~~~----~~~~~~~~~i~ 90 (328)
T 1g6q_1 29 AIIQNKDLFKDKIVLDVGCGT----GI----LSMFAAKH-G----AKHVIGVDMS-SIIEMAKEL----VELNGFSDKIT 90 (328)
T ss_dssp HHHHHHHHHTTCEEEEETCTT----SH----HHHHHHHT-C----CSEEEEEESS-THHHHHHHH----HHHTTCTTTEE
T ss_pred HHHhhHhhcCCCEEEEecCcc----HH----HHHHHHHC-C----CCEEEEEChH-HHHHHHHHH----HHHcCCCCCEE
Confidence 344333322334899999743 32 33345554 2 2489999987 444444333 4445553 44
Q ss_pred EEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 040125 322 FSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLV 382 (514)
Q Consensus 322 F~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlv 382 (514)
| +...++++... ...=++|+.+.+. +.+..+ .....+|..+ +-|+|.-.++.
T Consensus 91 ~--~~~d~~~~~~~---~~~~D~Ivs~~~~--~~l~~~--~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 91 L--LRGKLEDVHLP---FPKVDIIISEWMG--YFLLYE--SMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp E--EESCTTTSCCS---SSCEEEEEECCCB--TTBSTT--CCHHHHHHHHHHHEEEEEEEES
T ss_pred E--EECchhhccCC---CCcccEEEEeCch--hhcccH--HHHHHHHHHHHhhcCCCeEEEE
Confidence 4 33334443211 1111345544332 333332 2355677766 67899877663
No 119
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=48.07 E-value=52 Score=28.19 Aligned_cols=61 Identities=13% Similarity=0.196 Sum_probs=39.4
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN 319 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp 319 (514)
+.+++.+.-...-+|+|+|.|. | .+...|+.+. | ..++|+|+.+...++.+.+++ +..|++
T Consensus 15 ~~~~~~~~~~~~~~vldiG~G~----G----~~~~~l~~~~---~-~~~v~~vD~~~~~~~~a~~~~----~~~~~~ 75 (178)
T 3hm2_A 15 ALAISALAPKPHETLWDIGGGS----G----SIAIEWLRST---P-QTTAVCFEISEERRERILSNA----INLGVS 75 (178)
T ss_dssp HHHHHHHCCCTTEEEEEESTTT----T----HHHHHHHTTS---S-SEEEEEECSCHHHHHHHHHHH----HTTTCT
T ss_pred HHHHHHhcccCCCeEEEeCCCC----C----HHHHHHHHHC---C-CCeEEEEeCCHHHHHHHHHHH----HHhCCC
Confidence 3445555555567899999643 3 3445556553 3 489999999887777666654 345665
No 120
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=47.86 E-value=90 Score=28.06 Aligned_cols=106 Identities=16% Similarity=0.187 Sum_probs=57.4
Q ss_pred eEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCC---ceEEEeecCCccc
Q 040125 255 VHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGI---NLEFSVVESNLEN 331 (514)
Q Consensus 255 VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgv---pFeF~~V~~~lE~ 331 (514)
-.|+|+|-|. | ..+ +. ++.+ + + -++|||+.+...++.+.+++ +..|+ ..+|.. ....+
T Consensus 55 ~~vLDlGcGt----G--~~~-~~-~~~~-~--~--~~v~gvD~s~~~l~~a~~~~----~~~~~~~~~v~~~~--~d~~~ 115 (201)
T 2ift_A 55 SECLDGFAGS----G--SLG-FE-ALSR-Q--A--KKVTFLELDKTVANQLKKNL----QTLKCSSEQAEVIN--QSSLD 115 (201)
T ss_dssp CEEEETTCTT----C--HHH-HH-HHHT-T--C--SEEEEECSCHHHHHHHHHHH----HHTTCCTTTEEEEC--SCHHH
T ss_pred CeEEEcCCcc----C--HHH-HH-HHHc-c--C--CEEEEEECCHHHHHHHHHHH----HHhCCCccceEEEE--CCHHH
Confidence 4799999653 3 222 22 3333 2 1 48999999887777776664 34555 355533 22222
Q ss_pred cCcccccccC-CcEEEEEeccccccccccccchHHHHHHHHHh---cCCcEEEEEeecCCC
Q 040125 332 LQTKDIKVLE-NEVLVVNSILQLHCVVKESRGALNSVLQIIHE---LSPKVLVLVEQDSSH 388 (514)
Q Consensus 332 l~~~~l~~~~-~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~---L~PkVvvlvE~ea~~ 388 (514)
+.+. +.-.. =++|+.|..+ | . +....+|+.+.. |+|.-+++++.....
T Consensus 116 ~~~~-~~~~~~fD~I~~~~~~--~--~----~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 116 FLKQ-PQNQPHFDVVFLDPPF--H--F----NLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp HTTS-CCSSCCEEEEEECCCS--S--S----CHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred HHHh-hccCCCCCEEEECCCC--C--C----ccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 1110 00011 2456666553 3 1 234578888865 999977766655443
No 121
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=47.41 E-value=1.4e+02 Score=25.82 Aligned_cols=43 Identities=23% Similarity=0.195 Sum_probs=29.3
Q ss_pred eEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHH
Q 040125 255 VHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKD 311 (514)
Q Consensus 255 VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~ 311 (514)
-+|+|+|.|. | .+...|+.+ + -++|||+.+...++.+.+++.+
T Consensus 24 ~~vLDiGcG~----G----~~~~~la~~-~-----~~v~~vD~s~~~l~~a~~~~~~ 66 (185)
T 3mti_A 24 SIVVDATMGN----G----NDTAFLAGL-S-----KKVYAFDVQEQALGKTSQRLSD 66 (185)
T ss_dssp CEEEESCCTT----S----HHHHHHHTT-S-----SEEEEEESCHHHHHHHHHHHHH
T ss_pred CEEEEEcCCC----C----HHHHHHHHh-C-----CEEEEEECCHHHHHHHHHHHHH
Confidence 3799999643 3 233446665 2 5899999988888777766543
No 122
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=47.21 E-value=65 Score=31.16 Aligned_cols=85 Identities=14% Similarity=0.122 Sum_probs=46.3
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCC--ce
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGI--NL 320 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgv--pF 320 (514)
+.|++++.-...-+|+|+|-|. |.- ...|+.+ + -++|||+.+...++.+.+++ +..|+ .+
T Consensus 18 ~~i~~~~~~~~~~~VLDiG~G~----G~l----t~~L~~~-~-----~~v~~vD~~~~~~~~a~~~~----~~~~~~~~v 79 (285)
T 1zq9_A 18 NSIIDKAALRPTDVVLEVGPGT----GNM----TVKLLEK-A-----KKVVACELDPRLVAELHKRV----QGTPVASKL 79 (285)
T ss_dssp HHHHHHTCCCTTCEEEEECCTT----STT----HHHHHHH-S-----SEEEEEESCHHHHHHHHHHH----TTSTTGGGE
T ss_pred HHHHHhcCCCCCCEEEEEcCcc----cHH----HHHHHhh-C-----CEEEEEECCHHHHHHHHHHH----HhcCCCCce
Confidence 3455555544556899999753 433 3344444 2 28999998876666655543 33343 34
Q ss_pred EEEeecCCccccCcccccccCCcEEEEEeccc
Q 040125 321 EFSVVESNLENLQTKDIKVLENEVLVVNSILQ 352 (514)
Q Consensus 321 eF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~ 352 (514)
+|. .....++... .=+.|+.|..++
T Consensus 80 ~~~--~~D~~~~~~~-----~fD~vv~nlpy~ 104 (285)
T 1zq9_A 80 QVL--VGDVLKTDLP-----FFDTCVANLPYQ 104 (285)
T ss_dssp EEE--ESCTTTSCCC-----CCSEEEEECCGG
T ss_pred EEE--Ecceecccch-----hhcEEEEecCcc
Confidence 443 2333333221 124677777654
No 123
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=46.48 E-value=1.6e+02 Score=26.36 Aligned_cols=108 Identities=18% Similarity=0.268 Sum_probs=58.6
Q ss_pred HHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEe
Q 040125 245 ILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSV 324 (514)
Q Consensus 245 ILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~ 324 (514)
|++.+... -.|+|+|.|. |. +...|+.+ .++|||+.+...++.+.+++.+ .+...+|..
T Consensus 27 ~~~~~~~~--~~vLdiG~G~----G~----~~~~l~~~-------~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~~ 85 (243)
T 3d2l_A 27 VLEQVEPG--KRIADIGCGT----GT----ATLLLADH-------YEVTGVDLSEEMLEIAQEKAME----TNRHVDFWV 85 (243)
T ss_dssp HHHHSCTT--CEEEEESCTT----CH----HHHHHTTT-------SEEEEEESCHHHHHHHHHHHHH----TTCCCEEEE
T ss_pred HHHHcCCC--CeEEEecCCC----CH----HHHHHhhC-------CeEEEEECCHHHHHHHHHhhhh----cCCceEEEE
Confidence 44444432 5799999653 32 34455543 4899999988777776665433 344455543
Q ss_pred ecCCccccCcccccccCCcEEEEEecc-ccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 040125 325 VESNLENLQTKDIKVLENEVLVVNSIL-QLHCVVKESRGALNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 325 V~~~lE~l~~~~l~~~~~EaLaVN~~~-~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE 383 (514)
. .+.++.. . ..=++|+ |.. .+||+.+. .....+|+.+ +.|+|.-.++++
T Consensus 86 ~--d~~~~~~---~-~~fD~v~--~~~~~~~~~~~~--~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 86 Q--DMRELEL---P-EPVDAIT--ILCDSLNYLQTE--ADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp C--CGGGCCC---S-SCEEEEE--ECTTGGGGCCSH--HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred c--ChhhcCC---C-CCcCEEE--EeCCchhhcCCH--HHHHHHHHHHHHhcCCCeEEEEE
Confidence 2 2332221 1 1112333 333 56777431 2234566655 568998766664
No 124
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=46.19 E-value=1.1e+02 Score=28.98 Aligned_cols=45 Identities=20% Similarity=0.152 Sum_probs=28.5
Q ss_pred ceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHH
Q 040125 253 SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELK 310 (514)
Q Consensus 253 ~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~ 310 (514)
+.-+|+|+|.| .|. +.. |+.+. +. -+||||+.+...++.+.+++.
T Consensus 71 ~~~~vLDiGcG----~G~-~~~----l~~~~--~~--~~v~gvD~s~~~l~~a~~~~~ 115 (289)
T 2g72_A 71 SGRTLIDIGSG----PTV-YQL----LSACS--HF--EDITMTDFLEVNRQELGRWLQ 115 (289)
T ss_dssp CCSEEEEETCT----TCC-GGG----TTGGG--GC--SEEEEECSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCC----cCh-HHH----Hhhcc--CC--CeEEEeCCCHHHHHHHHHHHh
Confidence 44689999975 344 332 22222 12 489999998877777766553
No 125
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=45.46 E-value=2e+02 Score=29.59 Aligned_cols=95 Identities=17% Similarity=0.255 Sum_probs=56.9
Q ss_pred eEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccCc
Q 040125 255 VHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQT 334 (514)
Q Consensus 255 VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~~ 334 (514)
-.|+|+|-|. | . +...||.+ + -+++||+.+.+.++.+.+++ +..|++.+|.. ...+++.+
T Consensus 292 ~~VLDlgcG~----G--~--~sl~la~~-~-----~~V~gvD~s~~ai~~A~~n~----~~ngl~v~~~~--~d~~~~~~ 351 (425)
T 2jjq_A 292 EKILDMYSGV----G--T--FGIYLAKR-G-----FNVKGFDSNEFAIEMARRNV----EINNVDAEFEV--ASDREVSV 351 (425)
T ss_dssp SEEEEETCTT----T--H--HHHHHHHT-T-----CEEEEEESCHHHHHHHHHHH----HHHTCCEEEEE--CCTTTCCC
T ss_pred CEEEEeeccc----h--H--HHHHHHHc-C-----CEEEEEECCHHHHHHHHHHH----HHcCCcEEEEE--CChHHcCc
Confidence 4789999643 2 2 22345654 1 38999999888777776654 44566655543 33333322
Q ss_pred ccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEe
Q 040125 335 KDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLVE 383 (514)
Q Consensus 335 ~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkVvvlvE 383 (514)
. .=++|++|-.. .+....+++.++.|+|.-++.+.
T Consensus 352 ~-----~fD~Vv~dPPr---------~g~~~~~~~~l~~l~p~givyvs 386 (425)
T 2jjq_A 352 K-----GFDTVIVDPPR---------AGLHPRLVKRLNREKPGVIVYVS 386 (425)
T ss_dssp T-----TCSEEEECCCT---------TCSCHHHHHHHHHHCCSEEEEEE
T ss_pred c-----CCCEEEEcCCc---------cchHHHHHHHHHhcCCCcEEEEE
Confidence 1 23466665331 01224688899999999777764
No 126
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=44.91 E-value=1.6e+02 Score=25.80 Aligned_cols=103 Identities=14% Similarity=0.186 Sum_probs=54.3
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccC
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQ 333 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~ 333 (514)
.-+|+|+|.| .|.-...+ ++. ++ .++|||+.+...++.+.+++.+ .+..++|.. ..++++.
T Consensus 24 ~~~vLDiGcG----~G~~~~~~---~~~-~~-----~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~~--~d~~~~~ 84 (209)
T 2p8j_A 24 DKTVLDCGAG----GDLPPLSI---FVE-DG-----YKTYGIEISDLQLKKAENFSRE----NNFKLNISK--GDIRKLP 84 (209)
T ss_dssp CSEEEEESCC----SSSCTHHH---HHH-TT-----CEEEEEECCHHHHHHHHHHHHH----HTCCCCEEE--CCTTSCC
T ss_pred CCEEEEECCC----CCHHHHHH---HHh-CC-----CEEEEEECCHHHHHHHHHHHHh----cCCceEEEE--CchhhCC
Confidence 3579999964 33322222 222 22 4899999988777776665543 233344432 2233322
Q ss_pred cccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 040125 334 TKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 334 ~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE 383 (514)
..++..=+|-+...+||+.. .....+|+.+ +.|+|.-++++.
T Consensus 85 -----~~~~~fD~v~~~~~l~~~~~---~~~~~~l~~~~~~LkpgG~l~~~ 127 (209)
T 2p8j_A 85 -----FKDESMSFVYSYGTIFHMRK---NDVKEAIDEIKRVLKPGGLACIN 127 (209)
T ss_dssp -----SCTTCEEEEEECSCGGGSCH---HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -----CCCCceeEEEEcChHHhCCH---HHHHHHHHHHHHHcCCCcEEEEE
Confidence 22332223334456688742 1234555554 678998555443
No 127
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=44.80 E-value=60 Score=27.53 Aligned_cols=104 Identities=10% Similarity=0.027 Sum_probs=53.9
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccC
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQ 333 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~ 333 (514)
.-+|+|+|.|. | .+...|+.+ + + . +|||+.+...++.+.+++.. .|+..+|.. ..+.+..
T Consensus 42 ~~~vLD~GcG~----G----~~~~~l~~~--~-~-~--v~~vD~~~~~~~~a~~~~~~----~~~~~~~~~--~d~~~~~ 101 (171)
T 1ws6_A 42 RGRFLDPFAGS----G----AVGLEAASE--G-W-E--AVLVEKDPEAVRLLKENVRR----TGLGARVVA--LPVEVFL 101 (171)
T ss_dssp CCEEEEETCSS----C----HHHHHHHHT--T-C-E--EEEECCCHHHHHHHHHHHHH----HTCCCEEEC--SCHHHHH
T ss_pred CCeEEEeCCCc----C----HHHHHHHHC--C-C-e--EEEEeCCHHHHHHHHHHHHH----cCCceEEEe--ccHHHHH
Confidence 34799999753 3 234445554 2 3 2 99999988777776665543 344444432 2222211
Q ss_pred ccccccc--CCcEEEEEeccccccccccccchHHHHHHHH---HhcCCcEEEEEeecCC
Q 040125 334 TKDIKVL--ENEVLVVNSILQLHCVVKESRGALNSVLQII---HELSPKVLVLVEQDSS 387 (514)
Q Consensus 334 ~~~l~~~--~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I---r~L~PkVvvlvE~ea~ 387 (514)
+ .+... .=++|+.|..+. + .. ..+++.+ +-|+|.-+++++....
T Consensus 102 ~-~~~~~~~~~D~i~~~~~~~-~----~~----~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 102 P-EAKAQGERFTVAFMAPPYA-M----DL----AALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp H-HHHHTTCCEEEEEECCCTT-S----CT----THHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred H-hhhccCCceEEEEECCCCc-h----hH----HHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 0 01001 124566665553 1 11 2344444 5599997776665443
No 128
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=44.39 E-value=1.7e+02 Score=25.84 Aligned_cols=93 Identities=15% Similarity=0.123 Sum_probs=52.0
Q ss_pred ceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCcccc
Q 040125 253 SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENL 332 (514)
Q Consensus 253 ~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l 332 (514)
+.-+|+|+|-|. |. +...|+.+ | + -++|||+.+...++.+.++ ++..|+..+|.. ...+++
T Consensus 49 ~~~~vlD~g~G~----G~----~~~~l~~~--~-~--~~v~~vD~~~~~~~~a~~~----~~~~~~~~~~~~--~d~~~~ 109 (207)
T 1wy7_A 49 EGKVVADLGAGT----GV----LSYGALLL--G-A--KEVICVEVDKEAVDVLIEN----LGEFKGKFKVFI--GDVSEF 109 (207)
T ss_dssp TTCEEEEETCTT----CH----HHHHHHHT--T-C--SEEEEEESCHHHHHHHHHH----TGGGTTSEEEEE--SCGGGC
T ss_pred CcCEEEEeeCCC----CH----HHHHHHHc--C-C--CEEEEEECCHHHHHHHHHH----HHHcCCCEEEEE--CchHHc
Confidence 345899999753 32 34456655 1 2 2899999887777666555 344566555433 334333
Q ss_pred CcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcC
Q 040125 333 QTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELS 375 (514)
Q Consensus 333 ~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~ 375 (514)
. ..=++|+.|..+.. ... +....+|+.+.++-
T Consensus 110 ~------~~~D~v~~~~p~~~--~~~---~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 110 N------SRVDIVIMNPPFGS--QRK---HADRPFLLKAFEIS 141 (207)
T ss_dssp C------CCCSEEEECCCCSS--SST---TTTHHHHHHHHHHC
T ss_pred C------CCCCEEEEcCCCcc--ccC---CchHHHHHHHHHhc
Confidence 2 12357888877632 221 22245666665554
No 129
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=43.31 E-value=1.2e+02 Score=30.17 Aligned_cols=135 Identities=13% Similarity=0.092 Sum_probs=70.9
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhc-CCceEEEeecCCcccc
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTY-GINLEFSVVESNLENL 332 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~l-gvpFeF~~V~~~lE~l 332 (514)
.-+|+|+|.|-| .+...|+.+ +| .-+||+|+.+...++...+++.+++..+ +-.++|.. ....+.
T Consensus 121 ~~~VLdIG~G~G--------~~a~~la~~---~~-~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~--~D~~~~ 186 (334)
T 1xj5_A 121 PKKVLVIGGGDG--------GVLREVARH---AS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVI--GDGVAF 186 (334)
T ss_dssp CCEEEEETCSSS--------HHHHHHTTC---TT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEE--SCHHHH
T ss_pred CCEEEEECCCcc--------HHHHHHHHc---CC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEE--CCHHHH
Confidence 358999997533 244556654 23 4799999999888888888776654333 12345533 111111
Q ss_pred CcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEeecCCCCCCchHHHHHHHHHHHHHHHh
Q 040125 333 QTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFD 409 (514)
Q Consensus 333 ~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE~ea~~nsp~F~~RF~EAL~yYsAlFD 409 (514)
-+ .+.-..=++|++|+....+.. . .. ....+++.+ +.|+|.-++++..+.-...+.. +.+.+.-...+|.
T Consensus 187 l~-~~~~~~fDlIi~d~~~p~~~~-~-~l-~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~---~~~~~~~l~~~F~ 257 (334)
T 1xj5_A 187 LK-NAAEGSYDAVIVDSSDPIGPA-K-EL-FEKPFFQSVARALRPGGVVCTQAESLWLHMDI---IEDIVSNCREIFK 257 (334)
T ss_dssp HH-TSCTTCEEEEEECCCCTTSGG-G-GG-GSHHHHHHHHHHEEEEEEEEEECCCTTTCHHH---HHHHHHHHHHHCS
T ss_pred HH-hccCCCccEEEECCCCccCcc-h-hh-hHHHHHHHHHHhcCCCcEEEEecCCccccHHH---HHHHHHHHHHhCc
Confidence 00 000011256777664333321 1 00 013556555 6789998888765544333322 3333444445555
No 130
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=43.05 E-value=1.1e+02 Score=30.12 Aligned_cols=100 Identities=19% Similarity=0.245 Sum_probs=52.0
Q ss_pred hhCCCccchh-HhhhHH----HHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHH
Q 040125 229 EICPHIQFGH-FVANSS----ILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQ 303 (514)
Q Consensus 229 e~sP~~kfah-ftANqA----ILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~ 303 (514)
.+.|=-+++. |..++. |++++.-...-+|+|+|-|. | .|-..|+.+. -++|+|+.+.+.++
T Consensus 21 ~~~~~k~~GQnfL~d~~i~~~Iv~~l~~~~~~~VLEIG~G~----G----~lT~~La~~~------~~V~aVEid~~li~ 86 (295)
T 3gru_A 21 MFKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGK----G----ILTEELAKNA------KKVYVIEIDKSLEP 86 (295)
T ss_dssp ---------CCEECCHHHHHHHHHHTTCCTTCEEEEECCTT----S----HHHHHHHHHS------SEEEEEESCGGGHH
T ss_pred CCCCccccCccccCCHHHHHHHHHhcCCCCcCEEEEECCCc----h----HHHHHHHhcC------CEEEEEECCHHHHH
Confidence 3455555554 555554 44455544556899999753 3 3455566652 38999998887777
Q ss_pred HHHHHHHHHHHhcCCceEEEeecCCccccCcccccccCCcEEEEEeccc
Q 040125 304 SIGDELKDYAKTYGINLEFSVVESNLENLQTKDIKVLENEVLVVNSILQ 352 (514)
Q Consensus 304 etg~rL~~fA~~lgvpFeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~ 352 (514)
...+++. ..+ .++| +.....+++... .+-++|+.|..+.
T Consensus 87 ~a~~~~~----~~~-~v~v--i~gD~l~~~~~~---~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 87 YANKLKE----LYN-NIEI--IWGDALKVDLNK---LDFNKVVANLPYQ 125 (295)
T ss_dssp HHHHHHH----HCS-SEEE--EESCTTTSCGGG---SCCSEEEEECCGG
T ss_pred HHHHHhc----cCC-CeEE--EECchhhCCccc---CCccEEEEeCccc
Confidence 7766654 111 2333 333333333222 1235788887764
No 131
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=42.18 E-value=92 Score=31.91 Aligned_cols=100 Identities=21% Similarity=0.261 Sum_probs=54.3
Q ss_pred EEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccCcc
Q 040125 256 HVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQTK 335 (514)
Q Consensus 256 HIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~~~ 335 (514)
+|+|+|-| ..+-++ +|.|.|. -|++||+.+. .+ +. ..+.++..|+.=....+...+++++..
T Consensus 86 ~VLDvG~G------tGiLs~---~Aa~aGA----~~V~ave~s~-~~-~~---a~~~~~~n~~~~~i~~i~~~~~~~~lp 147 (376)
T 4hc4_A 86 TVLDVGAG------TGILSI---FCAQAGA----RRVYAVEASA-IW-QQ---AREVVRFNGLEDRVHVLPGPVETVELP 147 (376)
T ss_dssp EEEEETCT------TSHHHH---HHHHTTC----SEEEEEECST-TH-HH---HHHHHHHTTCTTTEEEEESCTTTCCCS
T ss_pred EEEEeCCC------ccHHHH---HHHHhCC----CEEEEEeChH-HH-HH---HHHHHHHcCCCceEEEEeeeeeeecCC
Confidence 58999863 334444 4556652 3899999653 22 22 233455566653444555556665421
Q ss_pred cccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEE
Q 040125 336 DIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVL 381 (514)
Q Consensus 336 ~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvl 381 (514)
.+=++|+-+++ -+.|+.|+ .++.+|... |-|+|.-+++
T Consensus 148 ----e~~DvivsE~~--~~~l~~e~--~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 148 ----EQVDAIVSEWM--GYGLLHES--MLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp ----SCEEEEECCCC--BTTBTTTC--SHHHHHHHHHHHEEEEEEEE
T ss_pred ----ccccEEEeecc--cccccccc--hhhhHHHHHHhhCCCCceEC
Confidence 01122322232 24455543 467888777 6688886655
No 132
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=41.32 E-value=1.2e+02 Score=30.32 Aligned_cols=110 Identities=14% Similarity=0.054 Sum_probs=59.0
Q ss_pred CceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCC--ceEEEeecCCc
Q 040125 252 ESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGI--NLEFSVVESNL 329 (514)
Q Consensus 252 ~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgv--pFeF~~V~~~l 329 (514)
...-.|+|.|.|- | .+.-.++.+. + .-+|+|++.+...++.+.+++ +..|+ ..+|..- ..
T Consensus 216 ~~~~~vLD~gCGs----G----~~~i~~a~~~--~--~~~v~g~Dis~~~l~~A~~n~----~~~gl~~~i~~~~~--D~ 277 (373)
T 3tm4_A 216 LDGGSVLDPMCGS----G----TILIELALRR--Y--SGEIIGIEKYRKHLIGAEMNA----LAAGVLDKIKFIQG--DA 277 (373)
T ss_dssp CCSCCEEETTCTT----C----HHHHHHHHTT--C--CSCEEEEESCHHHHHHHHHHH----HHTTCGGGCEEEEC--CG
T ss_pred CCCCEEEEccCcC----c----HHHHHHHHhC--C--CCeEEEEeCCHHHHHHHHHHH----HHcCCCCceEEEEC--Ch
Confidence 3455799999653 3 2344455442 2 248999999888887777664 44566 4555432 23
Q ss_pred cccCcccccccCCcEEEEEeccccccccccccch-HHHHHHHHHh-cCCcEEEEE
Q 040125 330 ENLQTKDIKVLENEVLVVNSILQLHCVVKESRGA-LNSVLQIIHE-LSPKVLVLV 382 (514)
Q Consensus 330 E~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~-~~~~L~~Ir~-L~PkVvvlv 382 (514)
.++... ...=++|+.|-.+...--..+.... ...+++.+++ |++.+++++
T Consensus 278 ~~~~~~---~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l~g~~~~i~ 329 (373)
T 3tm4_A 278 TQLSQY---VDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVLEKRGVFIT 329 (373)
T ss_dssp GGGGGT---CSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred hhCCcc---cCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 333211 1223578888777442110111111 2567777776 666666654
No 133
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=39.61 E-value=1.2e+02 Score=29.92 Aligned_cols=113 Identities=15% Similarity=0.140 Sum_probs=59.6
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhc-CCceEEEeecCCccc-
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTY-GINLEFSVVESNLEN- 331 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~l-gvpFeF~~V~~~lE~- 331 (514)
.-+|+|+|.|-| .+...++.++ | ..++|+|+.+...++.+.+++..++..+ +-.++|.. ....+
T Consensus 117 ~~~VLdiG~G~G--------~~~~~l~~~~---~-~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~--~D~~~~ 182 (321)
T 2pt6_A 117 PKNVLVVGGGDG--------GIIRELCKYK---S-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFI--EDASKF 182 (321)
T ss_dssp CCEEEEEECTTC--------HHHHHHTTCT---T-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEE--SCHHHH
T ss_pred CCEEEEEcCCcc--------HHHHHHHHcC---C-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEE--ccHHHH
Confidence 357999997533 2445566542 3 4799999998877777776654432222 12344432 21111
Q ss_pred cCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEeecC
Q 040125 332 LQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVEQDS 386 (514)
Q Consensus 332 l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE~ea 386 (514)
+.. .-..=++|++|....++. .+.. ....+++.+ +.|+|.-+++++...
T Consensus 183 l~~---~~~~fDvIi~d~~~p~~~--~~~l-~~~~~l~~~~~~LkpgG~lv~~~~~ 232 (321)
T 2pt6_A 183 LEN---VTNTYDVIIVDSSDPIGP--AETL-FNQNFYEKIYNALKPNGYCVAQCES 232 (321)
T ss_dssp HHH---CCSCEEEEEEECCCSSSG--GGGG-SSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred Hhh---cCCCceEEEECCcCCCCc--chhh-hHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 100 001125777776432221 0000 014566665 668999888887543
No 134
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=39.06 E-value=1.6e+02 Score=28.82 Aligned_cols=136 Identities=13% Similarity=0.112 Sum_probs=70.2
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhc-CCceEEEeecCCccc-
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTY-GINLEFSVVESNLEN- 331 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~l-gvpFeF~~V~~~lE~- 331 (514)
.-+|+|+|.|-| .+...|+.+. | .-+||+|+.+...++...+++...+..+ +-.+++.. ....+
T Consensus 96 ~~~VLdiG~G~G--------~~~~~l~~~~---~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~--~Da~~~ 161 (304)
T 2o07_A 96 PRKVLIIGGGDG--------GVLREVVKHP---S-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHV--GDGFEF 161 (304)
T ss_dssp CCEEEEEECTTS--------HHHHHHTTCT---T-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE--SCHHHH
T ss_pred CCEEEEECCCch--------HHHHHHHHcC---C-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEE--CcHHHH
Confidence 357999996533 2445566552 3 4799999999888888887776654433 22344432 11111
Q ss_pred cCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEeecCCCCCCchHHHHHHHHHHHHHHHhh
Q 040125 332 LQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDS 410 (514)
Q Consensus 332 l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE~ea~~nsp~F~~RF~EAL~yYsAlFDS 410 (514)
+.. .-..=++|++++..... .... -....+++.+ +.|+|.-+++++.......+ +.+.+...+...+|..
T Consensus 162 l~~---~~~~fD~Ii~d~~~~~~--~~~~-l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~---~~~~~~~~~l~~~f~~ 232 (304)
T 2o07_A 162 MKQ---NQDAFDVIITDSSDPMG--PAES-LFKESYYQLMKTALKEDGVLCCQGECQWLHL---DLIKEMRQFCQSLFPV 232 (304)
T ss_dssp HHT---CSSCEEEEEEECC--------------CHHHHHHHHHEEEEEEEEEEEECTTTCH---HHHHHHHHHHHHHCSE
T ss_pred Hhh---CCCCceEEEECCCCCCC--cchh-hhHHHHHHHHHhccCCCeEEEEecCCcccch---HHHHHHHHHHHHhCCC
Confidence 110 00112567776653221 1100 0012456555 67899988887764433222 2233444455566664
Q ss_pred hh
Q 040125 411 LD 412 (514)
Q Consensus 411 Ld 412 (514)
..
T Consensus 233 v~ 234 (304)
T 2o07_A 233 VA 234 (304)
T ss_dssp EE
T ss_pred ce
Confidence 43
No 135
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=38.78 E-value=1.2e+02 Score=26.39 Aligned_cols=34 Identities=29% Similarity=0.515 Sum_probs=23.5
Q ss_pred EEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHH
Q 040125 256 HVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQS 304 (514)
Q Consensus 256 HIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~e 304 (514)
.|+|+|.|- | .+...|+.+. ++|||+.+...++.
T Consensus 26 ~vLD~GcG~----G----~~~~~l~~~~-------~v~gvD~s~~~~~~ 59 (170)
T 3q87_B 26 IVLDLGTST----G----VITEQLRKRN-------TVVSTDLNIRALES 59 (170)
T ss_dssp EEEEETCTT----C----HHHHHHTTTS-------EEEEEESCHHHHHT
T ss_pred eEEEeccCc----c----HHHHHHHhcC-------cEEEEECCHHHHhc
Confidence 899999753 3 3445566541 99999988766654
No 136
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=38.69 E-value=2.4e+02 Score=26.02 Aligned_cols=97 Identities=21% Similarity=0.234 Sum_probs=50.8
Q ss_pred ceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCcccc
Q 040125 253 SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENL 332 (514)
Q Consensus 253 ~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l 332 (514)
..-.|+|+|.|. | .+...|+.+ + .++|||+.+...++...++.. +. | +...++++
T Consensus 54 ~~~~vLDiGcG~----G----~~~~~l~~~-~-----~~v~gvD~s~~~l~~a~~~~~------~~---~--~~~d~~~~ 108 (260)
T 2avn_A 54 NPCRVLDLGGGT----G----KWSLFLQER-G-----FEVVLVDPSKEMLEVAREKGV------KN---V--VEAKAEDL 108 (260)
T ss_dssp SCCEEEEETCTT----C----HHHHHHHTT-T-----CEEEEEESCHHHHHHHHHHTC------SC---E--EECCTTSC
T ss_pred CCCeEEEeCCCc----C----HHHHHHHHc-C-----CeEEEEeCCHHHHHHHHhhcC------CC---E--EECcHHHC
Confidence 456899999753 3 234456654 2 489999988776666555422 11 2 22223332
Q ss_pred CcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 040125 333 QTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 333 ~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE 383 (514)
. ..++..=+|-+...++|+..+ ...+|+.+ +-|+|.-.+++.
T Consensus 109 ~-----~~~~~fD~v~~~~~~~~~~~~----~~~~l~~~~~~LkpgG~l~~~ 151 (260)
T 2avn_A 109 P-----FPSGAFEAVLALGDVLSYVEN----KDKAFSEIRRVLVPDGLLIAT 151 (260)
T ss_dssp C-----SCTTCEEEEEECSSHHHHCSC----HHHHHHHHHHHEEEEEEEEEE
T ss_pred C-----CCCCCEEEEEEcchhhhcccc----HHHHHHHHHHHcCCCeEEEEE
Confidence 2 222322122233334555432 34555555 668998555543
No 137
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=38.55 E-value=1.3e+02 Score=28.74 Aligned_cols=134 Identities=15% Similarity=0.109 Sum_probs=69.8
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCC-ceEEEeecCCccc-
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGI-NLEFSVVESNLEN- 331 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgv-pFeF~~V~~~lE~- 331 (514)
.-+|+|+|.|. | .+...++.++ | .-+||+|+.+...++.+.+++.+++..++- .+++.. ....+
T Consensus 76 ~~~VLdiG~G~----G----~~~~~l~~~~---~-~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~--~D~~~~ 141 (275)
T 1iy9_A 76 PEHVLVVGGGD----G----GVIREILKHP---S-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQV--DDGFMH 141 (275)
T ss_dssp CCEEEEESCTT----C----HHHHHHTTCT---T-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEE--SCSHHH
T ss_pred CCEEEEECCch----H----HHHHHHHhCC---C-CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEE--CcHHHH
Confidence 45799999753 3 3445565543 3 469999999988888888877666443322 244432 11111
Q ss_pred cCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEeecCCCCCCch-HHHHHHHHHHHHHHHh
Q 040125 332 LQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVEQDSSHNGPFF-LGRFMEALHYYSAIFD 409 (514)
Q Consensus 332 l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE~ea~~nsp~F-~~RF~EAL~yYsAlFD 409 (514)
+... -..=++|+++... +....+.- ....|++.+ +.|+|.-++++.... |.+ ...+.+.+.....+|.
T Consensus 142 l~~~---~~~fD~Ii~d~~~--~~~~~~~l-~~~~~~~~~~~~L~pgG~lv~~~~~----~~~~~~~~~~~~~~l~~~F~ 211 (275)
T 1iy9_A 142 IAKS---ENQYDVIMVDSTE--PVGPAVNL-FTKGFYAGIAKALKEDGIFVAQTDN----PWFTPELITNVQRDVKEIFP 211 (275)
T ss_dssp HHTC---CSCEEEEEESCSS--CCSCCCCC-STTHHHHHHHHHEEEEEEEEEECCC----TTTCHHHHHHHHHHHHTTCS
T ss_pred HhhC---CCCeeEEEECCCC--CCCcchhh-hHHHHHHHHHHhcCCCcEEEEEcCC----ccccHHHHHHHHHHHHHhCC
Confidence 1100 0122566766543 21111000 013455544 679999887776432 221 3445555555555555
Q ss_pred hh
Q 040125 410 SL 411 (514)
Q Consensus 410 SL 411 (514)
..
T Consensus 212 ~v 213 (275)
T 1iy9_A 212 IT 213 (275)
T ss_dssp EE
T ss_pred Ce
Confidence 43
No 138
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=38.36 E-value=1e+02 Score=28.26 Aligned_cols=46 Identities=11% Similarity=0.003 Sum_probs=29.0
Q ss_pred CCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHH
Q 040125 251 GESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDEL 309 (514)
Q Consensus 251 g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL 309 (514)
..+.-.|+|+|.|.| . +. ..|+.+ + ..++|||+.+...++.+.+++
T Consensus 54 ~~~~~~vLDlGcG~G----~-~~---~~l~~~-~----~~~v~gvD~s~~~l~~a~~~~ 99 (265)
T 2i62_A 54 AVKGELLIDIGSGPT----I-YQ---LLSACE-S----FTEIIVSDYTDQNLWELQKWL 99 (265)
T ss_dssp SCCEEEEEEESCTTC----C-GG---GTTGGG-T----EEEEEEEESCHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCcc----H-HH---HHHhhc-c----cCeEEEecCCHHHHHHHHHHH
Confidence 345678999997532 1 11 123332 1 158999999887777776665
No 139
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=37.58 E-value=2.3e+02 Score=25.63 Aligned_cols=106 Identities=11% Similarity=0.042 Sum_probs=53.7
Q ss_pred ceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCcccc
Q 040125 253 SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENL 332 (514)
Q Consensus 253 ~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l 332 (514)
..-+|+|+|.|- | .+...|+.+ ++ -++|||+.+...++.+.++ ++..+...+|.. ..++++
T Consensus 60 ~~~~vLDiGcGt----G----~~~~~l~~~---~~--~~v~gvD~s~~~l~~a~~~----~~~~~~~v~~~~--~d~~~~ 120 (236)
T 1zx0_A 60 KGGRVLEVGFGM----A----IAASKVQEA---PI--DEHWIIECNDGVFQRLRDW----APRQTHKVIPLK--GLWEDV 120 (236)
T ss_dssp TCEEEEEECCTT----S----HHHHHHHTS---CE--EEEEEEECCHHHHHHHHHH----GGGCSSEEEEEE--SCHHHH
T ss_pred CCCeEEEEeccC----C----HHHHHHHhc---CC--CeEEEEcCCHHHHHHHHHH----HHhcCCCeEEEe--cCHHHh
Confidence 456899999753 3 233344443 12 3899999988777666553 445565555533 333332
Q ss_pred CcccccccCC--cEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 040125 333 QTKDIKVLEN--EVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLV 382 (514)
Q Consensus 333 ~~~~l~~~~~--EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlv 382 (514)
.. ...++ ++|+.+ .+.+ +..+......+.+|+.+ |-|+|.-+++.
T Consensus 121 ~~---~~~~~~fD~V~~d-~~~~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~~ 168 (236)
T 1zx0_A 121 AP---TLPDGHFDGILYD-TYPL-SEETWHTHQFNFIKNHAFRLLKPGGVLTY 168 (236)
T ss_dssp GG---GSCTTCEEEEEEC-CCCC-BGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred hc---ccCCCceEEEEEC-Cccc-chhhhhhhhHHHHHHHHHHhcCCCeEEEE
Confidence 10 12222 344441 2322 11111112234555544 66899865553
No 140
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=37.15 E-value=1.1e+02 Score=28.75 Aligned_cols=128 Identities=11% Similarity=0.074 Sum_probs=62.7
Q ss_pred hHHHHhhhc-CCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc-
Q 040125 242 NSSILEAFE-GESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN- 319 (514)
Q Consensus 242 NqAILEA~~-g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp- 319 (514)
...+|-++- -...-+|+|+|.|- |. +...|+.+. | ..+||+|+.+...++.+.+++...+. .|+.
T Consensus 24 D~~lL~~~~~~~~~~~VLDlG~G~----G~----~~l~la~~~---~-~~~v~gvDi~~~~~~~a~~n~~~~~~-~~l~~ 90 (260)
T 2ozv_A 24 DAMLLASLVADDRACRIADLGAGA----GA----AGMAVAARL---E-KAEVTLYERSQEMAEFARRSLELPDN-AAFSA 90 (260)
T ss_dssp HHHHHHHTCCCCSCEEEEECCSSS----SH----HHHHHHHHC---T-TEEEEEEESSHHHHHHHHHHTTSGGG-TTTGG
T ss_pred HHHHHHHHhcccCCCEEEEeCChH----hH----HHHHHHHhC---C-CCeEEEEECCHHHHHHHHHHHHhhhh-CCCcc
Confidence 333444433 23456899999753 32 223455553 3 48999999888777776665432111 4554
Q ss_pred -eEEEeecCCccccCcc----cccccCCcEEEEEecccccc-cc----------ccccchHHHHHHHH-HhcCCcEEEEE
Q 040125 320 -LEFSVVESNLENLQTK----DIKVLENEVLVVNSILQLHC-VV----------KESRGALNSVLQII-HELSPKVLVLV 382 (514)
Q Consensus 320 -FeF~~V~~~lE~l~~~----~l~~~~~EaLaVN~~~~Lh~-l~----------~es~~~~~~~L~~I-r~L~PkVvvlv 382 (514)
++|. ...+.++.+. .+.-..=+.|+.|-.+.... .. .+.......+|+.+ +-|+|.-.+++
T Consensus 91 ~v~~~--~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~ 168 (260)
T 2ozv_A 91 RIEVL--EADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSL 168 (260)
T ss_dssp GEEEE--ECCTTCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEE
T ss_pred eEEEE--eCCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEE
Confidence 4443 3333333110 11111225777775553220 00 00111245666655 66899866655
Q ss_pred ee
Q 040125 383 EQ 384 (514)
Q Consensus 383 E~ 384 (514)
..
T Consensus 169 ~~ 170 (260)
T 2ozv_A 169 IS 170 (260)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 141
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=37.08 E-value=53 Score=30.08 Aligned_cols=105 Identities=13% Similarity=0.150 Sum_probs=54.6
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccC
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQ 333 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~ 333 (514)
.-.|+|+|.|. | .+...|+.+. + ++|||+.+...++...+++ .. -..+|.. ..+.++.
T Consensus 57 ~~~vLD~GcG~----G----~~~~~la~~~--~----~v~gvD~s~~~~~~a~~~~----~~--~~~~~~~--~d~~~~~ 114 (245)
T 3ggd_A 57 ELPLIDFACGN----G----TQTKFLSQFF--P----RVIGLDVSKSALEIAAKEN----TA--ANISYRL--LDGLVPE 114 (245)
T ss_dssp TSCEEEETCTT----S----HHHHHHHHHS--S----CEEEEESCHHHHHHHHHHS----CC--TTEEEEE--CCTTCHH
T ss_pred CCeEEEEcCCC----C----HHHHHHHHhC--C----CEEEEECCHHHHHHHHHhC----cc--cCceEEE--Ccccccc
Confidence 35699999643 3 2344455542 2 7999999887776666554 11 1344433 2233322
Q ss_pred cc-cccc-cCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcE-EEEEeec
Q 040125 334 TK-DIKV-LENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKV-LVLVEQD 385 (514)
Q Consensus 334 ~~-~l~~-~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkV-vvlvE~e 385 (514)
.. .+.. ....+| -+...+|++..+ ....+|+.+ +.|+|.- +++++..
T Consensus 115 ~~~~~~~~~~~d~v--~~~~~~~~~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~ 165 (245)
T 3ggd_A 115 QAAQIHSEIGDANI--YMRTGFHHIPVE---KRELLGQSLRILLGKQGAMYLIELG 165 (245)
T ss_dssp HHHHHHHHHCSCEE--EEESSSTTSCGG---GHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred cccccccccCccEE--EEcchhhcCCHH---HHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 11 0100 012333 344456877532 234566555 5689974 5666653
No 142
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=36.49 E-value=1.3e+02 Score=27.28 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=28.3
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHH
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDE 308 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~r 308 (514)
.-+|+|+|.|. |. +...|+.+ + .++|||+.+...++...++
T Consensus 49 ~~~vLDiGcG~----G~----~~~~l~~~-~-----~~v~~vD~s~~~~~~a~~~ 89 (226)
T 3m33_A 49 QTRVLEAGCGH----GP----DAARFGPQ-A-----ARWAAYDFSPELLKLARAN 89 (226)
T ss_dssp TCEEEEESCTT----SH----HHHHHGGG-S-----SEEEEEESCHHHHHHHHHH
T ss_pred CCeEEEeCCCC----CH----HHHHHHHc-C-----CEEEEEECCHHHHHHHHHh
Confidence 35799999753 32 55566665 2 4899999988777666555
No 143
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=35.44 E-value=77 Score=30.42 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=36.2
Q ss_pred HHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHH
Q 040125 244 SILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELK 310 (514)
Q Consensus 244 AILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~ 310 (514)
.|++++.-...-+|+|+|-|.| .|-..|+.+. -++|+|+.+.+.++...+++.
T Consensus 20 ~iv~~~~~~~~~~VLEIG~G~G--------~lt~~La~~~------~~V~avEid~~~~~~~~~~~~ 72 (255)
T 3tqs_A 20 KIVSAIHPQKTDTLVEIGPGRG--------ALTDYLLTEC------DNLALVEIDRDLVAFLQKKYN 72 (255)
T ss_dssp HHHHHHCCCTTCEEEEECCTTT--------TTHHHHTTTS------SEEEEEECCHHHHHHHHHHHT
T ss_pred HHHHhcCCCCcCEEEEEccccc--------HHHHHHHHhC------CEEEEEECCHHHHHHHHHHHh
Confidence 3666665555668999997543 3556677652 379999988877776666553
No 144
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=35.03 E-value=1.5e+02 Score=28.76 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=34.9
Q ss_pred hHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHH
Q 040125 242 NSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDEL 309 (514)
Q Consensus 242 NqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL 309 (514)
.+.|++++.-...-.|+|+|-|. |. +...|+.+ + -++|||+.+...++.+.+++
T Consensus 31 ~~~i~~~~~~~~~~~VLDiG~G~----G~----lt~~La~~-~-----~~v~~vDi~~~~~~~a~~~~ 84 (299)
T 2h1r_A 31 LDKIIYAAKIKSSDIVLEIGCGT----GN----LTVKLLPL-A-----KKVITIDIDSRMISEVKKRC 84 (299)
T ss_dssp HHHHHHHHCCCTTCEEEEECCTT----ST----THHHHTTT-S-----SEEEEECSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCcCEEEEEcCcC----cH----HHHHHHhc-C-----CEEEEEECCHHHHHHHHHHH
Confidence 34556666544555899999754 33 33456655 1 38999998887776666654
No 145
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=34.94 E-value=2.7e+02 Score=25.94 Aligned_cols=47 Identities=19% Similarity=0.113 Sum_probs=29.4
Q ss_pred CCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHH
Q 040125 251 GESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELK 310 (514)
Q Consensus 251 g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~ 310 (514)
..+.-+|+|+|.|. | |-++ ++...+ --+||||+.+...++.+.+++.
T Consensus 53 ~~~g~~vLDiGCG~----G--~~~~---~~~~~~----~~~v~g~D~s~~~l~~a~~~~~ 99 (263)
T 2a14_A 53 GLQGDTLIDIGSGP----T--IYQV---LAACDS----FQDITLSDFTDRNREELEKWLK 99 (263)
T ss_dssp SCCEEEEEESSCTT----C--CGGG---TTGGGT----EEEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCceEEEeCCCc----c--HHHH---HHHHhh----hcceeeccccHHHHHHHHHHHh
Confidence 34567899999753 2 2111 111221 2379999999888887776653
No 146
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=34.45 E-value=1.6e+02 Score=28.80 Aligned_cols=135 Identities=11% Similarity=0.119 Sum_probs=67.7
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHh-cC-CceEEEeecCCccc
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKT-YG-INLEFSVVESNLEN 331 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~-lg-vpFeF~~V~~~lE~ 331 (514)
.-+|+|+|.|-| .+...|+.+ +| .-+||+|+.+...++...+++...... ++ -.++|..- +-.+-
T Consensus 84 ~~~VLdiG~G~G--------~~~~~l~~~---~~-~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~-D~~~~ 150 (294)
T 3adn_A 84 AKHVLIIGGGDG--------AMLREVTRH---KN-VESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVID-DGVNF 150 (294)
T ss_dssp CCEEEEESCTTC--------HHHHHHHTC---TT-CCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECS-CSCC-
T ss_pred CCEEEEEeCChh--------HHHHHHHhC---CC-CCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEC-hHHHH
Confidence 348999997533 244556654 23 479999999888888887776665321 11 12333211 10111
Q ss_pred cCcccccccCCcEEEEEeccccccccccccchH--HHHHHHH-HhcCCcEEEEEeecCCCCCCchHHHHHHHHHHHHHHH
Q 040125 332 LQTKDIKVLENEVLVVNSILQLHCVVKESRGAL--NSVLQII-HELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIF 408 (514)
Q Consensus 332 l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~--~~~L~~I-r~L~PkVvvlvE~ea~~nsp~F~~RF~EAL~yYsAlF 408 (514)
+.. .-..=++|++++.... ... ..+ ..|++.+ +.|+|.-++++..++-...+ +.+.+.+.....+|
T Consensus 151 l~~---~~~~fDvIi~D~~~p~--~~~---~~l~~~~f~~~~~~~LkpgG~lv~~~~s~~~~~---~~~~~~~~~l~~~F 219 (294)
T 3adn_A 151 VNQ---TSQTFDVIISDCTDPI--GPG---ESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQ---EEAIDSHRKLSHYF 219 (294)
T ss_dssp --C---CCCCEEEEEECC---------------CCHHHHHHHHHTEEEEEEEEEEEEECSSCC---HHHHHHHHHHHHHC
T ss_pred Hhh---cCCCccEEEECCCCcc--Ccc---hhccHHHHHHHHHHhcCCCCEEEEecCCcccch---HHHHHHHHHHHHHC
Confidence 110 0011256777654311 111 111 4566555 66999977777554322222 34555555566667
Q ss_pred hhhh
Q 040125 409 DSLD 412 (514)
Q Consensus 409 DSLd 412 (514)
....
T Consensus 220 ~~v~ 223 (294)
T 3adn_A 220 SDVG 223 (294)
T ss_dssp SEEE
T ss_pred CCeE
Confidence 6554
No 147
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=34.44 E-value=1e+02 Score=27.28 Aligned_cols=43 Identities=19% Similarity=0.103 Sum_probs=28.4
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHH
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDEL 309 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL 309 (514)
.-+|+|+|-|. |. +...|+.+ + .-++|||+.+...++.+.+++
T Consensus 52 ~~~vlD~gcG~----G~----~~~~l~~~-~----~~~v~~vD~~~~~~~~a~~~~ 94 (200)
T 1ne2_A 52 GRSVIDAGTGN----GI----LACGSYLL-G----AESVTAFDIDPDAIETAKRNC 94 (200)
T ss_dssp TSEEEEETCTT----CH----HHHHHHHT-T----BSEEEEEESCHHHHHHHHHHC
T ss_pred CCEEEEEeCCc----cH----HHHHHHHc-C----CCEEEEEECCHHHHHHHHHhc
Confidence 45799999753 32 34456654 1 248999998887777666554
No 148
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=34.17 E-value=2.8e+02 Score=25.47 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=32.5
Q ss_pred ceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHH
Q 040125 253 SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDY 312 (514)
Q Consensus 253 ~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~f 312 (514)
+.-.|+|+|.|.| . +...||.+. | ..++|||+.+...++.+.+++...
T Consensus 49 ~~~~vLDiGcG~G----~----~~~~la~~~---~-~~~v~gvD~s~~~l~~a~~~~~~~ 96 (246)
T 2vdv_E 49 KKVTIADIGCGFG----G----LMIDLSPAF---P-EDLILGMEIRVQVTNYVEDRIIAL 96 (246)
T ss_dssp CCEEEEEETCTTS----H----HHHHHHHHS---T-TSEEEEEESCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCC----H----HHHHHHHhC---C-CCCEEEEEcCHHHHHHHHHHHHHH
Confidence 3468999997543 2 333455442 3 479999999988888777776554
No 149
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=34.05 E-value=3e+02 Score=25.85 Aligned_cols=105 Identities=12% Similarity=0.025 Sum_probs=55.7
Q ss_pred ceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHH-H------H-H------hcCC
Q 040125 253 SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKD-Y------A-K------TYGI 318 (514)
Q Consensus 253 ~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~-f------A-~------~lgv 318 (514)
..-.|+|+|.|-| .++..||.+ | .++|||+.+...++.+.++... + + . ..+.
T Consensus 68 ~~~~vLD~GCG~G--------~~~~~La~~-G-----~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (252)
T 2gb4_A 68 SGLRVFFPLCGKA--------IEMKWFADR-G-----HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSG 133 (252)
T ss_dssp CSCEEEETTCTTC--------THHHHHHHT-T-----CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTS
T ss_pred CCCeEEEeCCCCc--------HHHHHHHHC-C-----CeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCC
Confidence 4568999997533 234557765 2 4899999988777665433210 0 0 0 0122
Q ss_pred ceEEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEE
Q 040125 319 NLEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLV 380 (514)
Q Consensus 319 pFeF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvv 380 (514)
..+|.. ..+.++.+.+ .+..=+|-+...||++..+ .+..+++.+ +-|+|.-.+
T Consensus 134 ~i~~~~--~D~~~l~~~~----~~~FD~V~~~~~l~~l~~~---~~~~~l~~~~~~LkpGG~l 187 (252)
T 2gb4_A 134 SISLYC--CSIFDLPRAN----IGKFDRIWDRGALVAINPG---DHDRYADIILSLLRKEFQY 187 (252)
T ss_dssp SEEEEE--SCTTTGGGGC----CCCEEEEEESSSTTTSCGG---GHHHHHHHHHHTEEEEEEE
T ss_pred ceEEEE--CccccCCccc----CCCEEEEEEhhhhhhCCHH---HHHHHHHHHHHHcCCCeEE
Confidence 344432 2333333211 1333334455567887532 345677666 559998443
No 150
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=33.24 E-value=84 Score=29.70 Aligned_cols=101 Identities=17% Similarity=0.166 Sum_probs=53.3
Q ss_pred ceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc-eEEEeecCCccc
Q 040125 253 SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN-LEFSVVESNLEN 331 (514)
Q Consensus 253 ~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp-FeF~~V~~~lE~ 331 (514)
..-+|+|+|.|- | .+++. ||.+. | ..+||+|+.+...++.+.++ ++.+|+. .+| +...+++
T Consensus 80 ~~~~vLDiG~G~----G--~~~i~--la~~~---~-~~~v~~vD~s~~~~~~a~~~----~~~~~l~~v~~--~~~d~~~ 141 (249)
T 3g89_A 80 GPLRVLDLGTGA----G--FPGLP--LKIVR---P-ELELVLVDATRKKVAFVERA----IEVLGLKGARA--LWGRAEV 141 (249)
T ss_dssp SSCEEEEETCTT----T--TTHHH--HHHHC---T-TCEEEEEESCHHHHHHHHHH----HHHHTCSSEEE--EECCHHH
T ss_pred CCCEEEEEcCCC----C--HHHHH--HHHHC---C-CCEEEEEECCHHHHHHHHHH----HHHhCCCceEE--EECcHHH
Confidence 445899999743 3 34333 22221 3 47999999988777666554 4455664 444 3344554
Q ss_pred cCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 040125 332 LQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLV 382 (514)
Q Consensus 332 l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlv 382 (514)
+......-..=++|+.+.. ...+.++..+ +-|+|.-.+++
T Consensus 142 ~~~~~~~~~~fD~I~s~a~-----------~~~~~ll~~~~~~LkpgG~l~~ 182 (249)
T 3g89_A 142 LAREAGHREAYARAVARAV-----------APLCVLSELLLPFLEVGGAAVA 182 (249)
T ss_dssp HTTSTTTTTCEEEEEEESS-----------CCHHHHHHHHGGGEEEEEEEEE
T ss_pred hhcccccCCCceEEEECCc-----------CCHHHHHHHHHHHcCCCeEEEE
Confidence 4321100011134444322 1235566655 56889865544
No 151
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=33.17 E-value=2.5e+02 Score=26.67 Aligned_cols=100 Identities=19% Similarity=0.156 Sum_probs=53.0
Q ss_pred EEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccCcc
Q 040125 256 HVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQTK 335 (514)
Q Consensus 256 HIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~~~ 335 (514)
.|+|+|.|- | ++ ...|+.+ + -++|||+.+...++. |+.. -.++|.. ...|++
T Consensus 42 ~vLDvGcGt----G-~~---~~~l~~~-~-----~~v~gvD~s~~ml~~--------a~~~-~~v~~~~--~~~e~~--- 93 (257)
T 4hg2_A 42 DALDCGCGS----G-QA---SLGLAEF-F-----ERVHAVDPGEAQIRQ--------ALRH-PRVTYAV--APAEDT--- 93 (257)
T ss_dssp EEEEESCTT----T-TT---HHHHHTT-C-----SEEEEEESCHHHHHT--------CCCC-TTEEEEE--CCTTCC---
T ss_pred CEEEEcCCC----C-HH---HHHHHHh-C-----CEEEEEeCcHHhhhh--------hhhc-CCceeeh--hhhhhh---
Confidence 589999753 3 33 3445554 2 379999988755433 3322 1234432 334433
Q ss_pred cccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcE-EEEEeecCCCCCC
Q 040125 336 DIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKV-LVLVEQDSSHNGP 391 (514)
Q Consensus 336 ~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkV-vvlvE~ea~~nsp 391 (514)
.+.++..=+|-|...||++. .+.+|..+ |-|+|.- ++++........|
T Consensus 94 --~~~~~sfD~v~~~~~~h~~~------~~~~~~e~~rvLkpgG~l~~~~~~~~~~~~ 143 (257)
T 4hg2_A 94 --GLPPASVDVAIAAQAMHWFD------LDRFWAELRRVARPGAVFAAVTYGLTRVDP 143 (257)
T ss_dssp --CCCSSCEEEEEECSCCTTCC------HHHHHHHHHHHEEEEEEEEEEEECCCBCCH
T ss_pred --cccCCcccEEEEeeehhHhh------HHHHHHHHHHHcCCCCEEEEEECCCCCCCH
Confidence 34445444455566778762 13445444 6689985 4444544333333
No 152
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=33.15 E-value=2.8e+02 Score=26.70 Aligned_cols=109 Identities=13% Similarity=0.083 Sum_probs=59.4
Q ss_pred hHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc-e
Q 040125 242 NSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN-L 320 (514)
Q Consensus 242 NqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp-F 320 (514)
-..+++.+.-...-+|+|+|.|. | .+...|+.+. ++ .-++|+|+.+.+.++.+.+++ +..|++ .
T Consensus 64 ~~~l~~~l~~~~~~~VLDiGcG~----G----~~~~~la~~~--~~-~~~v~gvD~s~~~~~~a~~~~----~~~g~~~v 128 (317)
T 1dl5_A 64 MALFMEWVGLDKGMRVLEIGGGT----G----YNAAVMSRVV--GE-KGLVVSVEYSRKICEIAKRNV----ERLGIENV 128 (317)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTT----S----HHHHHHHHHH--CT-TCEEEEEESCHHHHHHHHHHH----HHTTCCSE
T ss_pred HHHHHHhcCCCCcCEEEEecCCc----h----HHHHHHHHhc--CC-CCEEEEEECCHHHHHHHHHHH----HHcCCCCe
Confidence 34556666555556899999642 2 3445555542 22 368999999887777666554 344554 4
Q ss_pred EEEeecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEE
Q 040125 321 EFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLV 382 (514)
Q Consensus 321 eF~~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkVvvlv 382 (514)
+|.. ....+.-+. ..+=++|+++.+ +|++.+ ...+.|+|.-++++
T Consensus 129 ~~~~--~d~~~~~~~---~~~fD~Iv~~~~--~~~~~~----------~~~~~LkpgG~lvi 173 (317)
T 1dl5_A 129 IFVC--GDGYYGVPE---FSPYDVIFVTVG--VDEVPE----------TWFTQLKEGGRVIV 173 (317)
T ss_dssp EEEE--SCGGGCCGG---GCCEEEEEECSB--BSCCCH----------HHHHHEEEEEEEEE
T ss_pred EEEE--CChhhcccc---CCCeEEEEEcCC--HHHHHH----------HHHHhcCCCcEEEE
Confidence 4433 222221111 011145555544 466642 23467889855544
No 153
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=31.83 E-value=1.2e+02 Score=26.84 Aligned_cols=69 Identities=14% Similarity=0.127 Sum_probs=41.1
Q ss_pred HhhhHHHHhhhc--CCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhc
Q 040125 239 FVANSSILEAFE--GESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTY 316 (514)
Q Consensus 239 ftANqAILEA~~--g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~l 316 (514)
.-..+.+++.+. -...-.|+|+|.|. | .+...|+.+ | ..++|+|+.+...++.+.+++ +..
T Consensus 44 ~~~~~~~~~~l~~~~~~~~~vLDiG~G~----G----~~~~~l~~~----~-~~~v~~vD~s~~~~~~a~~~~----~~~ 106 (205)
T 3grz_A 44 HQTTQLAMLGIERAMVKPLTVADVGTGS----G----ILAIAAHKL----G-AKSVLATDISDESMTAAEENA----ALN 106 (205)
T ss_dssp HHHHHHHHHHHHHHCSSCCEEEEETCTT----S----HHHHHHHHT----T-CSEEEEEESCHHHHHHHHHHH----HHT
T ss_pred CccHHHHHHHHHHhccCCCEEEEECCCC----C----HHHHHHHHC----C-CCEEEEEECCHHHHHHHHHHH----HHc
Confidence 344455666654 23456899999742 3 233336654 2 359999998887776666554 344
Q ss_pred CCc-eEEEe
Q 040125 317 GIN-LEFSV 324 (514)
Q Consensus 317 gvp-FeF~~ 324 (514)
|++ ++|..
T Consensus 107 ~~~~v~~~~ 115 (205)
T 3grz_A 107 GIYDIALQK 115 (205)
T ss_dssp TCCCCEEEE
T ss_pred CCCceEEEe
Confidence 554 55543
No 154
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=31.24 E-value=2e+02 Score=25.71 Aligned_cols=104 Identities=12% Similarity=0.149 Sum_probs=54.6
Q ss_pred HHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEE
Q 040125 244 SILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFS 323 (514)
Q Consensus 244 AILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~ 323 (514)
.|++.+.-...-+|+|+|.|. |. +...|+.+. -++|+|+.+...++.+.+++ +..| ..+|.
T Consensus 61 ~~~~~~~~~~~~~vLdiG~G~----G~----~~~~l~~~~------~~v~~vD~~~~~~~~a~~~~----~~~~-~v~~~ 121 (231)
T 1vbf_A 61 FMLDELDLHKGQKVLEIGTGI----GY----YTALIAEIV------DKVVSVEINEKMYNYASKLL----SYYN-NIKLI 121 (231)
T ss_dssp HHHHHTTCCTTCEEEEECCTT----SH----HHHHHHHHS------SEEEEEESCHHHHHHHHHHH----TTCS-SEEEE
T ss_pred HHHHhcCCCCCCEEEEEcCCC----CH----HHHHHHHHc------CEEEEEeCCHHHHHHHHHHH----hhcC-CeEEE
Confidence 455555444556899999753 32 333455432 38999998877776666554 3333 44443
Q ss_pred eecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEe
Q 040125 324 VVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLVE 383 (514)
Q Consensus 324 ~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkVvvlvE 383 (514)
. ....+.-+. -..=++|+++ ..+|++.+ ...+.|+|.-.+++.
T Consensus 122 ~--~d~~~~~~~---~~~fD~v~~~--~~~~~~~~----------~~~~~L~pgG~l~~~ 164 (231)
T 1vbf_A 122 L--GDGTLGYEE---EKPYDRVVVW--ATAPTLLC----------KPYEQLKEGGIMILP 164 (231)
T ss_dssp E--SCGGGCCGG---GCCEEEEEES--SBBSSCCH----------HHHHTEEEEEEEEEE
T ss_pred E--CCccccccc---CCCccEEEEC--CcHHHHHH----------HHHHHcCCCcEEEEE
Confidence 3 222221000 0111344444 44577653 245678998544443
No 155
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=30.98 E-value=1.3e+02 Score=25.68 Aligned_cols=53 Identities=25% Similarity=0.203 Sum_probs=32.6
Q ss_pred HHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHH
Q 040125 244 SILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELK 310 (514)
Q Consensus 244 AILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~ 310 (514)
.+++.+.-...-+|+|+|.|. | .+...++.+. .++|+|+.+...++.+.+++.
T Consensus 24 ~~~~~~~~~~~~~vldiG~G~----G----~~~~~l~~~~------~~v~~~D~~~~~~~~a~~~~~ 76 (192)
T 1l3i_A 24 LIMCLAEPGKNDVAVDVGCGT----G----GVTLELAGRV------RRVYAIDRNPEAISTTEMNLQ 76 (192)
T ss_dssp HHHHHHCCCTTCEEEEESCTT----S----HHHHHHHTTS------SEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCEEEEECCCC----C----HHHHHHHHhc------CEEEEEECCHHHHHHHHHHHH
Confidence 344444444456899999643 3 2333455432 489999988877776666543
No 156
>1k87_A PUTA, proline dehydrogenase, proline dehydroge; multi-functional protein, transcripti repressor, shuttling, dimer, oxidoreductase; HET: FAD 1PE; 2.00A {Escherichia coli} SCOP: a.176.1.1 c.1.23.2
Probab=30.85 E-value=68 Score=35.72 Aligned_cols=145 Identities=11% Similarity=0.135 Sum_probs=82.4
Q ss_pred chhHhhhHHHHhhhc------CCceeEEEeeccccCCCCc--------cchHHHHHHHhhcCC------CCCCcEEEeEe
Q 040125 236 FGHFVANSSILEAFE------GESFVHVVDLGMTLGLPRG--------QQWRRLIESLANRAG------QPPRRLRITAV 295 (514)
Q Consensus 236 fahftANqAILEA~~------g~~~VHIVDf~I~~G~~~G--------~QWpsLiqaLA~R~g------gpP~~LRIT~I 295 (514)
+.||.+=..|-|+++ ....-.++|+-. .+. .+ -+...+|++++.... ++=.++|+|++
T Consensus 256 ~~qFVaGet~~ea~~~i~~L~~~G~~~slD~LG-Ea~-~t~~eA~~~~~~y~~~I~~i~~~~~~~~~~~~~~VSVKlSaL 333 (669)
T 1k87_A 256 GEQFVTGETIAEALANARKLEEKGFRYSYDMLG-EAA-LTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSAL 333 (669)
T ss_dssp HGGGCSBSSHHHHHHHHHHHHTTTCEEEEEECC-CCC-CSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHSCEEEECGGGT
T ss_pred hCeeeCCCCHHHHHHHHHHHHhCCCeEEEEeec-ccc-CCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCeEEEecccc
Confidence 478888777777764 233335788742 110 11 236678888765432 23347999999
Q ss_pred cCChh---------HHHHHHHHHHHHHHhcCCceEEEeecCCccccCcccccc-c-CC-----cEEEEEecccccccccc
Q 040125 296 GLCVE---------KFQSIGDELKDYAKTYGINLEFSVVESNLENLQTKDIKV-L-EN-----EVLVVNSILQLHCVVKE 359 (514)
Q Consensus 296 ~~~~~---------~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~~~~l~~-~-~~-----EaLaVN~~~~Lh~l~~e 359 (514)
++..+ .+.+--++|.+.|+..|+.+-+.+=.....+++.+.++. . ++ ..+-|-.+-.|++
T Consensus 334 g~~~~~~~~~~~~~~l~~rl~~L~~~A~~~gv~v~IDAEe~~~~~lTLdl~~~l~~~~~~~~~~~vGivlQAYLkr---- 409 (669)
T 1k87_A 334 HPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKR---- 409 (669)
T ss_dssp STTGGGCCHHHHHHHHHHHHHHHHHHHHHHTCCEEECCCCGGGHHHHHHHHHHHTTCGGGTTCCCEEEEEETTBTT----
T ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHHHcCCEEEEeCCCcchhHHHHHHHHHHhcCcccccCCCceEEEechhhc----
Confidence 98632 344455667788999998777665322222333333221 1 11 2333333444443
Q ss_pred ccchHHHHHHHHHhcCCcEEEEEeecC
Q 040125 360 SRGALNSVLQIIHELSPKVLVLVEQDS 386 (514)
Q Consensus 360 s~~~~~~~L~~Ir~L~PkVvvlvE~ea 386 (514)
+...++.++...+..+-++.|=.-..+
T Consensus 410 t~~~l~~l~~~A~~~G~~l~VRLVKGA 436 (669)
T 1k87_A 410 CPLVIDYLIDLATRSRRRLMIRLVKGA 436 (669)
T ss_dssp HHHHHHHHHHHHHHTTSCEEEEEECCS
T ss_pred cHHHHHHHHHHHHHcCCCceEEEecCC
Confidence 334567788888888888766554433
No 157
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=30.48 E-value=1.4e+02 Score=28.63 Aligned_cols=113 Identities=13% Similarity=0.136 Sum_probs=58.1
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhc-CCceEEEeecCCcccc
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTY-GINLEFSVVESNLENL 332 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~l-gvpFeF~~V~~~lE~l 332 (514)
.-+|+|+|.|.| .+...++.+ +| .-++|+|+.+...++...+++...+..+ +-.+++.. ....+.
T Consensus 79 ~~~VLdiG~G~G--------~~~~~l~~~---~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~--~D~~~~ 144 (283)
T 2i7c_A 79 PKNVLVVGGGDG--------GIIRELCKY---KS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFI--EDASKF 144 (283)
T ss_dssp CCEEEEEECTTS--------HHHHHHTTC---TT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEE--SCHHHH
T ss_pred CCeEEEEeCCcC--------HHHHHHHHc---CC-CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEE--CChHHH
Confidence 358999997533 344556554 23 4799999988877777766654432222 12234432 111110
Q ss_pred CcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEeec
Q 040125 333 QTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVEQD 385 (514)
Q Consensus 333 ~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE~e 385 (514)
-+. . -..=++|++++....+ ..+.. -...+++.+ +.|+|.-++++...
T Consensus 145 l~~-~-~~~fD~Ii~d~~~~~~--~~~~l-~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 145 LEN-V-TNTYDVIIVDSSDPIG--PAETL-FNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp HHH-C-CSCEEEEEEECCCTTT--GGGGG-SSHHHHHHHHHHEEEEEEEEEECC
T ss_pred HHh-C-CCCceEEEEcCCCCCC--cchhh-hHHHHHHHHHHhcCCCcEEEEECC
Confidence 000 0 0112567776543221 11100 014666666 66899977776543
No 158
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=30.45 E-value=2.5e+02 Score=27.52 Aligned_cols=113 Identities=18% Similarity=0.139 Sum_probs=57.8
Q ss_pred HHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc-eEEE
Q 040125 245 ILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN-LEFS 323 (514)
Q Consensus 245 ILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp-FeF~ 323 (514)
++....-...-.|+|.|.|- | .+.-.++.+.+ | ..+|+|++.+...++.+.+++ +..|++ .+|.
T Consensus 195 l~~~~~~~~~~~vLD~gcGs----G----~~~ie~a~~~~--~-~~~v~g~Di~~~~i~~a~~n~----~~~g~~~i~~~ 259 (354)
T 3tma_A 195 LLRLADARPGMRVLDPFTGS----G----TIALEAASTLG--P-TSPVYAGDLDEKRLGLAREAA----LASGLSWIRFL 259 (354)
T ss_dssp HHHHTTCCTTCCEEESSCTT----S----HHHHHHHHHHC--T-TSCEEEEESCHHHHHHHHHHH----HHTTCTTCEEE
T ss_pred HHHHhCCCCCCEEEeCCCCc----C----HHHHHHHHhhC--C-CceEEEEECCHHHHHHHHHHH----HHcCCCceEEE
Confidence 33333333445799999753 3 23333444321 2 378999999887777776654 445664 4443
Q ss_pred eecCCccccCcccccccCCcEEEEEecccccccccccc-chHHHHHHHHH-hcCCc
Q 040125 324 VVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESR-GALNSVLQIIH-ELSPK 377 (514)
Q Consensus 324 ~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~-~~~~~~L~~Ir-~L~Pk 377 (514)
. ....++... ...-++|+.|-.+.......... .....+++.++ .|+|.
T Consensus 260 ~--~D~~~~~~~---~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lkpg 310 (354)
T 3tma_A 260 R--ADARHLPRF---FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPG 310 (354)
T ss_dssp E--CCGGGGGGT---CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTT
T ss_pred e--CChhhCccc---cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCC
Confidence 3 223333221 11126888888774432111100 11145666654 56785
No 159
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=29.91 E-value=3e+02 Score=25.45 Aligned_cols=102 Identities=10% Similarity=0.135 Sum_probs=53.2
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc--eEEEeecCCccc
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN--LEFSVVESNLEN 331 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp--FeF~~V~~~lE~ 331 (514)
.-.|+|+|.+. |.- ...|+.+- || ..+||+|+.+...++.+.+++ +..|++ .+|..- ...+
T Consensus 64 ~~~VLdiG~G~----G~~----~~~la~~~--~~-~~~v~~vD~s~~~~~~a~~~~----~~~g~~~~v~~~~~--d~~~ 126 (248)
T 3tfw_A 64 AKRILEIGTLG----GYS----TIWMAREL--PA-DGQLLTLEADAHHAQVARENL----QLAGVDQRVTLREG--PALQ 126 (248)
T ss_dssp CSEEEEECCTT----SHH----HHHHHTTS--CT-TCEEEEEECCHHHHHHHHHHH----HHTTCTTTEEEEES--CHHH
T ss_pred CCEEEEecCCc----hHH----HHHHHHhC--CC-CCEEEEEECCHHHHHHHHHHH----HHcCCCCcEEEEEc--CHHH
Confidence 35899999753 321 22444432 33 479999998887776665553 445654 555432 1111
Q ss_pred cCccccc-ccCCcEEEEEeccccccccccccchHHHHHHH-HHhcCCcEEEEEe
Q 040125 332 LQTKDIK-VLENEVLVVNSILQLHCVVKESRGALNSVLQI-IHELSPKVLVLVE 383 (514)
Q Consensus 332 l~~~~l~-~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~-Ir~L~PkVvvlvE 383 (514)
.-+ .+. ...=+.|+++.. ......+|+. .+-|+|.-+++++
T Consensus 127 ~l~-~~~~~~~fD~V~~d~~----------~~~~~~~l~~~~~~LkpGG~lv~~ 169 (248)
T 3tfw_A 127 SLE-SLGECPAFDLIFIDAD----------KPNNPHYLRWALRYSRPGTLIIGD 169 (248)
T ss_dssp HHH-TCCSCCCCSEEEECSC----------GGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred HHH-hcCCCCCeEEEEECCc----------hHHHHHHHHHHHHhcCCCeEEEEe
Confidence 100 010 012245555431 1122345544 4778999877775
No 160
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=29.29 E-value=77 Score=27.80 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=26.3
Q ss_pred HHhhhcC-CceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHH
Q 040125 245 ILEAFEG-ESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDEL 309 (514)
Q Consensus 245 ILEA~~g-~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL 309 (514)
+++.+.. .+.-+|+|+|.|- |. +...|+.+. | ..++|||+.+...++.+.+++
T Consensus 21 ~~~~l~~~~~~~~vLDiG~G~----G~----~~~~l~~~~---~-~~~v~~vD~~~~~~~~a~~~~ 74 (215)
T 4dzr_A 21 AIRFLKRMPSGTRVIDVGTGS----GC----IAVSIALAC---P-GVSVTAVDLSMDALAVARRNA 74 (215)
T ss_dssp HHHHHTTCCTTEEEEEEESSB----CH----HHHHHHHHC---T-TEEEEEEECC-----------
T ss_pred HHHHhhhcCCCCEEEEecCCH----hH----HHHHHHHhC---C-CCeEEEEECCHHHHHHHHHHH
Confidence 3444443 5667999999753 32 333444442 3 479999998876666655544
No 161
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=28.68 E-value=3.7e+02 Score=25.27 Aligned_cols=109 Identities=16% Similarity=0.149 Sum_probs=58.1
Q ss_pred HHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEE
Q 040125 244 SILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFS 323 (514)
Q Consensus 244 AILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~ 323 (514)
.|++++.-...-+|+|+|-| +-.|...|+.++ .-++|||+.+...++...++ . +-.++
T Consensus 22 ~iv~~~~~~~~~~VLDiG~G--------~G~lt~~L~~~~-----~~~v~avEid~~~~~~~~~~-----~--~~~v~-- 79 (249)
T 3ftd_A 22 KIAEELNIEEGNTVVEVGGG--------TGNLTKVLLQHP-----LKKLYVIELDREMVENLKSI-----G--DERLE-- 79 (249)
T ss_dssp HHHHHTTCCTTCEEEEEESC--------HHHHHHHHTTSC-----CSEEEEECCCHHHHHHHTTS-----C--CTTEE--
T ss_pred HHHHhcCCCCcCEEEEEcCc--------hHHHHHHHHHcC-----CCeEEEEECCHHHHHHHHhc-----c--CCCeE--
Confidence 45555554455689999964 345778888762 25899999877555544332 1 12233
Q ss_pred eecCCccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhc--CCcEEEEEeec
Q 040125 324 VVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHEL--SPKVLVLVEQD 385 (514)
Q Consensus 324 ~V~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L--~PkVvvlvE~e 385 (514)
.+.....+++..++. ..-.++-|..+... .+-+.+.+... -+..++++..|
T Consensus 80 ~i~~D~~~~~~~~~~--~~~~vv~NlPy~i~---------~~il~~ll~~~~~~~~~~~m~Qke 132 (249)
T 3ftd_A 80 VINEDASKFPFCSLG--KELKVVGNLPYNVA---------SLIIENTVYNKDCVPLAVFMVQKE 132 (249)
T ss_dssp EECSCTTTCCGGGSC--SSEEEEEECCTTTH---------HHHHHHHHHTGGGCSEEEEEEEHH
T ss_pred EEEcchhhCChhHcc--CCcEEEEECchhcc---------HHHHHHHHhcCCCCceEEEEEeHH
Confidence 343444444433321 12256666665321 12344444432 45666666655
No 162
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=28.12 E-value=22 Score=36.76 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=21.2
Q ss_pred HHhhhcCCceeEEEeeccccCCCCccchH
Q 040125 245 ILEAFEGESFVHVVDLGMTLGLPRGQQWR 273 (514)
Q Consensus 245 ILEA~~g~~~VHIVDf~I~~G~~~G~QWp 273 (514)
|..+.+..+||=|||+|+..| .|+|+.
T Consensus 154 a~~l~~~~~RV~ivD~DvHHG--nGtq~i 180 (376)
T 4a69_A 154 ILELLKYHPRVLYIDIDIHHG--DGVQEA 180 (376)
T ss_dssp HHHHTTTCSCEEEEECSSSCC--HHHHHH
T ss_pred HHHHHHhCCcEEEEeccCCCC--cchhhH
Confidence 445555568999999999875 899975
No 163
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=27.41 E-value=2.4e+02 Score=25.53 Aligned_cols=101 Identities=15% Similarity=0.141 Sum_probs=49.9
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccC
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQ 333 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~ 333 (514)
.-+|+|+|.+. | .+...|+.+-| | .-+++||+.+...++... +.|+.. -..+|.. ...++..
T Consensus 78 ~~~vLDlG~G~----G----~~~~~la~~~g--~-~~~v~gvD~s~~~i~~~~----~~a~~~-~~v~~~~--~d~~~~~ 139 (233)
T 2ipx_A 78 GAKVLYLGAAS----G----TTVSHVSDIVG--P-DGLVYAVEFSHRSGRDLI----NLAKKR-TNIIPVI--EDARHPH 139 (233)
T ss_dssp TCEEEEECCTT----S----HHHHHHHHHHC--T-TCEEEEECCCHHHHHHHH----HHHHHC-TTEEEEC--SCTTCGG
T ss_pred CCEEEEEcccC----C----HHHHHHHHHhC--C-CcEEEEEECCHHHHHHHH----HHhhcc-CCeEEEE--cccCChh
Confidence 44899999753 3 23444555432 2 358999998765444332 334442 2344432 2222211
Q ss_pred cccccccCC--cEEEEEeccccccccccccchHHHHHH-HHHhcCCcEEEEEe
Q 040125 334 TKDIKVLEN--EVLVVNSILQLHCVVKESRGALNSVLQ-IIHELSPKVLVLVE 383 (514)
Q Consensus 334 ~~~l~~~~~--EaLaVN~~~~Lh~l~~es~~~~~~~L~-~Ir~L~PkVvvlvE 383 (514)
.+....+ ++|+.|.. .+.....++. ..+.|+|.-.+++.
T Consensus 140 --~~~~~~~~~D~V~~~~~---------~~~~~~~~~~~~~~~LkpgG~l~i~ 181 (233)
T 2ipx_A 140 --KYRMLIAMVDVIFADVA---------QPDQTRIVALNAHTFLRNGGHFVIS 181 (233)
T ss_dssp --GGGGGCCCEEEEEECCC---------CTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --hhcccCCcEEEEEEcCC---------CccHHHHHHHHHHHHcCCCeEEEEE
Confidence 1111122 34444322 1122334554 77899999666664
No 164
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=26.86 E-value=4.3e+02 Score=25.37 Aligned_cols=134 Identities=15% Similarity=0.139 Sum_probs=69.8
Q ss_pred eEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcC-CceEEEeecCCccc-c
Q 040125 255 VHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYG-INLEFSVVESNLEN-L 332 (514)
Q Consensus 255 VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lg-vpFeF~~V~~~lE~-l 332 (514)
-+|+|+|.|-| .+...++.+. | .-+||+|+.+...++.+.+++.+++..++ -.+++.. ....+ +
T Consensus 92 ~~VLdiG~G~G--------~~~~~l~~~~---~-~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~--~D~~~~l 157 (296)
T 1inl_A 92 KKVLIIGGGDG--------GTLREVLKHD---S-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVI--ANGAEYV 157 (296)
T ss_dssp CEEEEEECTTC--------HHHHHHTTST---T-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE--SCHHHHG
T ss_pred CEEEEEcCCcC--------HHHHHHHhcC---C-CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEE--CcHHHHH
Confidence 58999997533 2445566552 3 36999999998888888887766654442 2344432 21111 1
Q ss_pred CcccccccCCcEEEEEeccc-cccccccccchHHHHHHHH-HhcCCcEEEEEeecCCCCCCch-HHHHHHHHHHHHHHHh
Q 040125 333 QTKDIKVLENEVLVVNSILQ-LHCVVKESRGALNSVLQII-HELSPKVLVLVEQDSSHNGPFF-LGRFMEALHYYSAIFD 409 (514)
Q Consensus 333 ~~~~l~~~~~EaLaVN~~~~-Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE~ea~~nsp~F-~~RF~EAL~yYsAlFD 409 (514)
.. .-..=++|++|.... .+. .... ....+++.+ +.|+|.-++++... +|.+ ...+.+.+......|.
T Consensus 158 ~~---~~~~fD~Ii~d~~~~~~~~--~~~l-~~~~~l~~~~~~LkpgG~lv~~~~----~~~~~~~~~~~~~~~l~~~F~ 227 (296)
T 1inl_A 158 RK---FKNEFDVIIIDSTDPTAGQ--GGHL-FTEEFYQACYDALKEDGVFSAETE----DPFYDIGWFKLAYRRISKVFP 227 (296)
T ss_dssp GG---CSSCEEEEEEEC------------C-CSHHHHHHHHHHEEEEEEEEEECC----CTTTTHHHHHHHHHHHHHHCS
T ss_pred hh---CCCCceEEEEcCCCcccCc--hhhh-hHHHHHHHHHHhcCCCcEEEEEcc----CcccCHHHHHHHHHHHHHHCC
Confidence 10 001125677665421 110 0000 013566555 66899977777632 2222 3455555566666666
Q ss_pred hhh
Q 040125 410 SLD 412 (514)
Q Consensus 410 SLd 412 (514)
...
T Consensus 228 ~v~ 230 (296)
T 1inl_A 228 ITR 230 (296)
T ss_dssp EEE
T ss_pred ceE
Confidence 443
No 165
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=26.86 E-value=89 Score=29.35 Aligned_cols=52 Identities=15% Similarity=0.248 Sum_probs=33.2
Q ss_pred HHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHH
Q 040125 244 SILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDEL 309 (514)
Q Consensus 244 AILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL 309 (514)
.|++++.-...-+|+|+|-|. | .+...|+.+. -++|||+.+...++.+.+++
T Consensus 21 ~i~~~~~~~~~~~VLDiG~G~----G----~lt~~l~~~~------~~v~~vD~~~~~~~~a~~~~ 72 (244)
T 1qam_A 21 KIMTNIRLNEHDNIFEIGSGK----G----HFTLELVQRC------NFVTAIEIDHKLCKTTENKL 72 (244)
T ss_dssp HHHTTCCCCTTCEEEEECCTT----S----HHHHHHHHHS------SEEEEECSCHHHHHHHHHHT
T ss_pred HHHHhCCCCCCCEEEEEeCCc----h----HHHHHHHHcC------CeEEEEECCHHHHHHHHHhh
Confidence 344444434456899999753 3 3455666652 48999998877766665554
No 166
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=26.56 E-value=3.2e+02 Score=23.74 Aligned_cols=98 Identities=18% Similarity=0.189 Sum_probs=52.1
Q ss_pred EEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccCcc
Q 040125 256 HVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQTK 335 (514)
Q Consensus 256 HIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~~~ 335 (514)
.|+|+|.+. | .+...|+.+ + .++|+|+.+...++.+.+++.+ .|+.++|... .++++.
T Consensus 32 ~vLdiGcG~----G----~~~~~l~~~-~-----~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~~~--d~~~~~-- 89 (202)
T 2kw5_A 32 KILCLAEGE----G----RNACFLASL-G-----YEVTAVDQSSVGLAKAKQLAQE----KGVKITTVQS--NLADFD-- 89 (202)
T ss_dssp EEEECCCSC----T----HHHHHHHTT-T-----CEEEEECSSHHHHHHHHHHHHH----HTCCEEEECC--BTTTBS--
T ss_pred CEEEECCCC----C----HhHHHHHhC-C-----CeEEEEECCHHHHHHHHHHHHh----cCCceEEEEc--ChhhcC--
Confidence 899999653 2 234556654 2 4899999888777766665443 3555555432 233322
Q ss_pred cccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 040125 336 DIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 336 ~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE 383 (514)
+.-..=+.|+.+ + .|+. ......+|+.+ +.|+|.-.+++.
T Consensus 90 -~~~~~fD~v~~~--~--~~~~---~~~~~~~l~~~~~~L~pgG~l~~~ 130 (202)
T 2kw5_A 90 -IVADAWEGIVSI--F--CHLP---SSLRQQLYPKVYQGLKPGGVFILE 130 (202)
T ss_dssp -CCTTTCSEEEEE--C--CCCC---HHHHHHHHHHHHTTCCSSEEEEEE
T ss_pred -CCcCCccEEEEE--h--hcCC---HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 111112344433 2 2331 12234566665 558998555543
No 167
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=26.55 E-value=3.4e+02 Score=26.18 Aligned_cols=114 Identities=8% Similarity=0.035 Sum_probs=58.8
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcC-CceEEEeecCCcccc
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYG-INLEFSVVESNLENL 332 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lg-vpFeF~~V~~~lE~l 332 (514)
.-.|+|+|.|.| .+...|+.+ +| ..+||+|+.+...++...+++...++.++ -.++|.. ....++
T Consensus 96 ~~~VLdiG~G~G--------~~~~~l~~~---~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~--~D~~~~ 161 (304)
T 3bwc_A 96 PERVLIIGGGDG--------GVLREVLRH---GT-VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRV--GDGLAF 161 (304)
T ss_dssp CCEEEEEECTTS--------HHHHHHHTC---TT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE--SCHHHH
T ss_pred CCeEEEEcCCCC--------HHHHHHHhC---CC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEE--CcHHHH
Confidence 357999997533 245556654 23 47999999998888888877766554432 2244432 211111
Q ss_pred CcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEeec
Q 040125 333 QTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVEQD 385 (514)
Q Consensus 333 ~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE~e 385 (514)
-.. ..-..=++|++|... +......- ....|++.+ +.|+|.-++++..+
T Consensus 162 ~~~-~~~~~fDvIi~d~~~--~~~~~~~l-~~~~~l~~~~~~LkpgG~lv~~~~ 211 (304)
T 3bwc_A 162 VRQ-TPDNTYDVVIIDTTD--PAGPASKL-FGEAFYKDVLRILKPDGICCNQGE 211 (304)
T ss_dssp HHS-SCTTCEEEEEEECC------------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHh-ccCCceeEEEECCCC--ccccchhh-hHHHHHHHHHHhcCCCcEEEEecC
Confidence 000 000112567776544 22111100 003566655 67999876666543
No 168
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=26.42 E-value=1.3e+02 Score=29.22 Aligned_cols=55 Identities=22% Similarity=0.260 Sum_probs=34.2
Q ss_pred HHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHH
Q 040125 244 SILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDE 308 (514)
Q Consensus 244 AILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~r 308 (514)
.|++++.-...-+|+|+|-|. |. |-..|+.+. ++...++|||+.+.+.++...++
T Consensus 33 ~iv~~~~~~~~~~VLEIG~G~----G~----lt~~La~~~--~~~~~~V~avDid~~~l~~a~~~ 87 (279)
T 3uzu_A 33 AIVAAIRPERGERMVEIGPGL----GA----LTGPVIARL--ATPGSPLHAVELDRDLIGRLEQR 87 (279)
T ss_dssp HHHHHHCCCTTCEEEEECCTT----ST----THHHHHHHH--CBTTBCEEEEECCHHHHHHHHHH
T ss_pred HHHHhcCCCCcCEEEEEcccc----HH----HHHHHHHhC--CCcCCeEEEEECCHHHHHHHHHh
Confidence 355666555566899999754 43 334455442 11025799999887777666555
No 169
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=24.93 E-value=1.5e+02 Score=28.90 Aligned_cols=73 Identities=11% Similarity=0.063 Sum_probs=48.8
Q ss_pred hCCCccchhHhhhHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHH
Q 040125 230 ICPHIQFGHFVANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDEL 309 (514)
Q Consensus 230 ~sP~~kfahftANqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL 309 (514)
+-+=.++.|-+....|++.+.-...-.|+|+|.+. |. +...|+.+- || .-++++|+.+...++.+.+++
T Consensus 82 ~~~~~~~~~~~~~~~~l~~l~~~~g~~VLDiG~G~----G~----~~~~la~~~-g~--~~~v~~vD~~~~~~~~a~~~~ 150 (336)
T 2b25_A 82 MKRGTAITFPKDINMILSMMDINPGDTVLEAGSGS----GG----MSLFLSKAV-GS--QGRVISFEVRKDHHDLAKKNY 150 (336)
T ss_dssp SCCSSCCCCHHHHHHHHHHHTCCTTCEEEEECCTT----SH----HHHHHHHHH-CT--TCEEEEEESSHHHHHHHHHHH
T ss_pred hcCCCcccCHHHHHHHHHhcCCCCCCEEEEeCCCc----CH----HHHHHHHHh-CC--CceEEEEeCCHHHHHHHHHHH
Confidence 34445667777677788887655556899999753 32 333344432 22 369999999888888888877
Q ss_pred HHHH
Q 040125 310 KDYA 313 (514)
Q Consensus 310 ~~fA 313 (514)
.++-
T Consensus 151 ~~~~ 154 (336)
T 2b25_A 151 KHWR 154 (336)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 7654
No 170
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=24.77 E-value=28 Score=36.23 Aligned_cols=27 Identities=26% Similarity=0.207 Sum_probs=21.4
Q ss_pred HHhhhcCCceeEEEeeccccCCCCccchH
Q 040125 245 ILEAFEGESFVHVVDLGMTLGLPRGQQWR 273 (514)
Q Consensus 245 ILEA~~g~~~VHIVDf~I~~G~~~G~QWp 273 (514)
|..+.++.+||=|||+|+-.| .|+|+.
T Consensus 162 a~~l~~~~~RV~ivD~DvHHG--nGtq~i 188 (388)
T 3ew8_A 162 ILRLRRKFERILYVDLDLHHG--DGVEDA 188 (388)
T ss_dssp HHHHTTTCSCEEEEECSSSCC--HHHHHH
T ss_pred HHHHHhcCCeEEEEecCCCCC--hhHHHH
Confidence 445556678999999999875 898876
No 171
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=24.57 E-value=4e+02 Score=24.79 Aligned_cols=57 Identities=19% Similarity=0.142 Sum_probs=35.5
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHH
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELK 310 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~ 310 (514)
..|++.+.-...-.|+|+|.+. | .+...|+.+-+ | ..++|+|+.+...++.+.+++.
T Consensus 102 ~~i~~~~~~~~~~~VLDiG~G~----G----~~~~~la~~~~--~-~~~v~~vD~s~~~~~~a~~~~~ 158 (277)
T 1o54_A 102 SFIAMMLDVKEGDRIIDTGVGS----G----AMCAVLARAVG--S-SGKVFAYEKREEFAKLAESNLT 158 (277)
T ss_dssp HHHHHHTTCCTTCEEEEECCTT----S----HHHHHHHHHTT--T-TCEEEEECCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCEEEEECCcC----C----HHHHHHHHHhC--C-CcEEEEEECCHHHHHHHHHHHH
Confidence 3555665544455899999753 3 23334554422 2 3699999988877776666544
No 172
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=23.79 E-value=30 Score=35.71 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=20.9
Q ss_pred HHhhhcCCceeEEEeeccccCCCCccchH
Q 040125 245 ILEAFEGESFVHVVDLGMTLGLPRGQQWR 273 (514)
Q Consensus 245 ILEA~~g~~~VHIVDf~I~~G~~~G~QWp 273 (514)
|..+.+..+||=|||+|+..| .|+|+.
T Consensus 154 a~~l~~~~~RV~ivD~DvHHG--nGtq~i 180 (367)
T 3max_A 154 ILELLKYHQRVLYIDIDIHHG--DGVEEA 180 (367)
T ss_dssp HHHHTTTCSCEEEEECSSSCC--HHHHHH
T ss_pred HHHHHHcCCcEEEEecCCCCC--chhhHH
Confidence 345555568999999999875 888875
No 173
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=22.88 E-value=2.5e+02 Score=25.29 Aligned_cols=63 Identities=16% Similarity=0.128 Sum_probs=36.2
Q ss_pred HHHhhhc--CCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHH
Q 040125 244 SILEAFE--GESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDY 312 (514)
Q Consensus 244 AILEA~~--g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~f 312 (514)
.+++.+. -...-+|+|+|.+ .|..-..|.+.+.. .+..| .-++|+|+.+...++.+.+++.+.
T Consensus 73 ~~~~~l~~~~~~~~~VLdiG~G----~G~~~~~la~~~~~-~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~ 137 (227)
T 1r18_A 73 FALEYLRDHLKPGARILDVGSG----SGYLTACFYRYIKA-KGVDA-DTRIVGIEHQAELVRRSKANLNTD 137 (227)
T ss_dssp HHHHHTTTTCCTTCEEEEESCT----TSHHHHHHHHHHHH-SCCCT-TCEEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCEEEEECCC----ccHHHHHHHHhccc-ccCCc-cCEEEEEEcCHHHHHHHHHHHHhc
Confidence 3455553 2234589999964 33332223232221 12223 469999999888888777776654
No 174
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=22.83 E-value=2.7e+02 Score=29.05 Aligned_cols=119 Identities=19% Similarity=0.267 Sum_probs=61.0
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHH---HHHHHHHHHhcCC-
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSI---GDELKDYAKTYGI- 318 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~et---g~rL~~fA~~lgv- 318 (514)
..|++.+.-...-.|+|+|.|. |. +.-.||.+.+ ..+++||+.+...++.+ -+.+.+-++..|+
T Consensus 232 ~~ml~~l~l~~g~~VLDLGCGs----G~----la~~LA~~~g----~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~ 299 (433)
T 1u2z_A 232 SDVYQQCQLKKGDTFMDLGSGV----GN----CVVQAALECG----CALSFGCEIMDDASDLTILQYEELKKRCKLYGMR 299 (433)
T ss_dssp HHHHHHTTCCTTCEEEEESCTT----SH----HHHHHHHHHC----CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHhcCCCCCCEEEEeCCCc----CH----HHHHHHHHCC----CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC
Confidence 4566666555556899999643 33 3333444322 24899999887666555 3333445556674
Q ss_pred --ceEEEeecCCccccCcccc--cccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEe
Q 040125 319 --NLEFSVVESNLENLQTKDI--KVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLVE 383 (514)
Q Consensus 319 --pFeF~~V~~~lE~l~~~~l--~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkVvvlvE 383 (514)
.++|..- ..+.. ...+ ...+=++|++|..+ ++ . .....+-...+.|+|.-.+++-
T Consensus 300 ~~nV~~i~g-D~~~~--~~~~~~~~~~FDvIvvn~~l-~~---~---d~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 300 LNNVEFSLK-KSFVD--NNRVAELIPQCDVILVNNFL-FD---E---DLNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp CCCEEEEES-SCSTT--CHHHHHHGGGCSEEEECCTT-CC---H---HHHHHHHHHHTTCCTTCEEEES
T ss_pred CCceEEEEc-Ccccc--ccccccccCCCCEEEEeCcc-cc---c---cHHHHHHHHHHhCCCCeEEEEe
Confidence 3555321 11111 0001 01223577776544 11 1 1112344555789998555553
No 175
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=22.70 E-value=2.6e+02 Score=25.23 Aligned_cols=101 Identities=15% Similarity=0.267 Sum_probs=51.9
Q ss_pred eEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc--eEEEeecCCcccc
Q 040125 255 VHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN--LEFSVVESNLENL 332 (514)
Q Consensus 255 VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp--FeF~~V~~~lE~l 332 (514)
-+|+|+|.+. |. +...|+.+- | ..++|+|+.+...++.+.+++. ..|+. ++|.. ....+.
T Consensus 56 ~~vLdiG~G~----G~----~~~~la~~~---~-~~~v~~vD~~~~~~~~a~~~~~----~~~~~~~v~~~~--~d~~~~ 117 (233)
T 2gpy_A 56 ARILEIGTAI----GY----SAIRMAQAL---P-EATIVSIERDERRYEEAHKHVK----ALGLESRIELLF--GDALQL 117 (233)
T ss_dssp SEEEEECCTT----SH----HHHHHHHHC---T-TCEEEEECCCHHHHHHHHHHHH----HTTCTTTEEEEC--SCGGGS
T ss_pred CEEEEecCCC----cH----HHHHHHHHC---C-CCEEEEEECCHHHHHHHHHHHH----HcCCCCcEEEEE--CCHHHH
Confidence 4799999753 32 223344432 2 3699999988877776666543 44542 44432 222221
Q ss_pred CcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 040125 333 QTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 333 ~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE 383 (514)
-+....-..=+.|+++... + ....+|+.+ +.|+|.-+++++
T Consensus 118 ~~~~~~~~~fD~I~~~~~~--~--------~~~~~l~~~~~~L~pgG~lv~~ 159 (233)
T 2gpy_A 118 GEKLELYPLFDVLFIDAAK--G--------QYRRFFDMYSPMVRPGGLILSD 159 (233)
T ss_dssp HHHHTTSCCEEEEEEEGGG--S--------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHhcccCCCccEEEECCCH--H--------HHHHHHHHHHHHcCCCeEEEEE
Confidence 1100000111455555432 1 123455444 668999777775
No 176
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=22.32 E-value=1.3e+02 Score=23.62 Aligned_cols=34 Identities=24% Similarity=0.465 Sum_probs=22.2
Q ss_pred cEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEe
Q 040125 289 RLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSV 324 (514)
Q Consensus 289 ~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~ 324 (514)
.+|||||. ...-.+..+.-...|+.++|...|..
T Consensus 43 eiritgvp--eqvrkelakeaerlakefnitvtyti 76 (85)
T 2kl8_A 43 EIRITGVP--EQVRKELAKEAERLAKEFNITVTYTI 76 (85)
T ss_dssp EEEEESCC--HHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred EEEEecCh--HHHHHHHHHHHHHHHHhcCeEEEEEE
Confidence 68999884 33334445555556788888777754
No 177
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=22.25 E-value=5.8e+02 Score=25.22 Aligned_cols=95 Identities=13% Similarity=0.086 Sum_probs=53.2
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCC-ceEEEeecCCccc-
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGI-NLEFSVVESNLEN- 331 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgv-pFeF~~V~~~lE~- 331 (514)
.-.|+|+| |-| . +. ..|+.+ +| ..++|+|+.+...++.+.+++. ..|+ ..+| +...+.+
T Consensus 173 ~~~VLDlG-G~G----~-~~---~~la~~--~~--~~~v~~vDi~~~~l~~a~~~~~----~~g~~~v~~--~~~D~~~~ 233 (373)
T 2qm3_A 173 NKDIFVLG-DDD----L-TS---IALMLS--GL--PKRIAVLDIDERLTKFIEKAAN----EIGYEDIEI--FTFDLRKP 233 (373)
T ss_dssp TCEEEEES-CTT----C-HH---HHHHHH--TC--CSEEEEECSCHHHHHHHHHHHH----HHTCCCEEE--ECCCTTSC
T ss_pred CCEEEEEC-CCC----H-HH---HHHHHh--CC--CCEEEEEECCHHHHHHHHHHHH----HcCCCCEEE--EEChhhhh
Confidence 35799999 854 2 22 234443 23 3699999988877777766644 3455 3444 3333333
Q ss_pred cCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCc
Q 040125 332 LQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPK 377 (514)
Q Consensus 332 l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pk 377 (514)
+... + -..=++|++|..+.... ...+|+.+ +.|+|.
T Consensus 234 l~~~-~-~~~fD~Vi~~~p~~~~~--------~~~~l~~~~~~Lkpg 270 (373)
T 2qm3_A 234 LPDY-A-LHKFDTFITDPPETLEA--------IRAFVGRGIATLKGP 270 (373)
T ss_dssp CCTT-T-SSCBSEEEECCCSSHHH--------HHHHHHHHHHTBCST
T ss_pred chhh-c-cCCccEEEECCCCchHH--------HHHHHHHHHHHcccC
Confidence 2210 0 01226888887663321 24566655 678994
No 178
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=22.07 E-value=1.8e+02 Score=27.78 Aligned_cols=131 Identities=9% Similarity=0.076 Sum_probs=64.5
Q ss_pred eEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhc--------CCceEEEeec
Q 040125 255 VHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTY--------GINLEFSVVE 326 (514)
Q Consensus 255 VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~l--------gvpFeF~~V~ 326 (514)
-+|+|+|.|- | .+...++.+ | .-+||+|+.+...++...+++ +.+..+ +-.++|..
T Consensus 77 ~~VLdiG~G~----G----~~~~~l~~~----~-~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~-- 140 (281)
T 1mjf_A 77 KRVLVIGGGD----G----GTVREVLQH----D-VDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTI-- 140 (281)
T ss_dssp CEEEEEECTT----S----HHHHHHTTS----C-CSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEE--
T ss_pred CeEEEEcCCc----C----HHHHHHHhC----C-CCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEE--
Confidence 4799999753 3 344556655 2 269999999887777777665 332111 12244432
Q ss_pred CCccc-cCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEeecCCCCCCchHHHHHHHHHHH
Q 040125 327 SNLEN-LQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKVLVLVEQDSSHNGPFFLGRFMEALHYY 404 (514)
Q Consensus 327 ~~lE~-l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkVvvlvE~ea~~nsp~F~~RF~EAL~yY 404 (514)
....+ +.. -..=++|+++...... ..+.. ....|++.+ +.|+|.-++++....-... ...+.......
T Consensus 141 ~D~~~~l~~----~~~fD~Ii~d~~~~~~--~~~~l-~~~~~l~~~~~~L~pgG~lv~~~~~~~~~---~~~~~~~~~~l 210 (281)
T 1mjf_A 141 GDGFEFIKN----NRGFDVIIADSTDPVG--PAKVL-FSEEFYRYVYDALNNPGIYVTQAGSVYLF---TDELISAYKEM 210 (281)
T ss_dssp SCHHHHHHH----CCCEEEEEEECCCCC-------T-TSHHHHHHHHHHEEEEEEEEEEEEETTTS---HHHHHHHHHHH
T ss_pred CchHHHhcc----cCCeeEEEECCCCCCC--cchhh-hHHHHHHHHHHhcCCCcEEEEEcCCcccC---HHHHHHHHHHH
Confidence 11111 110 0112567766553211 10000 013566555 6689997777764332212 23333444444
Q ss_pred HHHHhhh
Q 040125 405 SAIFDSL 411 (514)
Q Consensus 405 sAlFDSL 411 (514)
..+|...
T Consensus 211 ~~~f~~v 217 (281)
T 1mjf_A 211 KKVFDRV 217 (281)
T ss_dssp HHHCSEE
T ss_pred HHHCCce
Confidence 4556543
No 179
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=21.29 E-value=90 Score=29.35 Aligned_cols=51 Identities=12% Similarity=0.193 Sum_probs=40.7
Q ss_pred hHHHHHHHHHhcCCcEEEEEeecCCCCCCchHHHHHHHHHHHHHHHhhhhc
Q 040125 363 ALNSVLQIIHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDA 413 (514)
Q Consensus 363 ~~~~~L~~Ir~L~PkVvvlvE~ea~~nsp~F~~RF~EAL~yYsAlFDSLda 413 (514)
....+++.+++.+.+..+.+|.+.........+-+.+++.|...+++.|-.
T Consensus 239 d~~~~~~~L~~~gy~g~~~lE~~~~~~~~~~~~~~~~s~~~l~~l~~~~~~ 289 (290)
T 3tva_A 239 GMEAYLTTLWEIGYRGPLTIEREIPHDPVQQKKDLASALELLTGLRKKIAN 289 (290)
T ss_dssp CHHHHHHHHHHTTCCSCEEECCCCTTSHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHcCCCCcEEEEEecCCChhhHHHHHHHHHHHHHHHHHHhcC
Confidence 467899999999999989999886532223678899999999999887754
No 180
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=21.04 E-value=1.7e+02 Score=27.22 Aligned_cols=50 Identities=20% Similarity=0.317 Sum_probs=34.0
Q ss_pred CCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHH
Q 040125 251 GESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDY 312 (514)
Q Consensus 251 g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~f 312 (514)
..+...|+|+|.|.| .++..||.+. | ...++||+.+...++.+.+++.+.
T Consensus 44 ~~~~~~vLDiGcG~G--------~~~~~la~~~---p-~~~v~GiDis~~~l~~A~~~~~~l 93 (235)
T 3ckk_A 44 AQAQVEFADIGCGYG--------GLLVELSPLF---P-DTLILGLEIRVKVSDYVQDRIRAL 93 (235)
T ss_dssp --CCEEEEEETCTTC--------HHHHHHGGGS---T-TSEEEEEESCHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEccCCc--------HHHHHHHHHC---C-CCeEEEEECCHHHHHHHHHHHHHH
Confidence 445678999997533 2445577653 3 468999999988888877776554
No 181
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=21.02 E-value=1.6e+02 Score=27.18 Aligned_cols=56 Identities=16% Similarity=0.145 Sum_probs=34.4
Q ss_pred HHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHH
Q 040125 245 ILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELK 310 (514)
Q Consensus 245 ILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~ 310 (514)
+++.+.+.....|+|+|.| .| .+.-.|+.+-.. | ..+||||+.+...++.+.+++.
T Consensus 43 ~l~~~~~~~~~~vLD~gcG----sG----~~~~~la~~~~~-~-~~~v~gvDis~~~l~~A~~~~~ 98 (250)
T 1o9g_A 43 ALARLPGDGPVTLWDPCCG----SG----YLLTVLGLLHRR-S-LRQVIASDVDPAPLELAAKNLA 98 (250)
T ss_dssp HHHTSSCCSCEEEEETTCT----TS----HHHHHHHHHTGG-G-EEEEEEEESCHHHHHHHHHHHH
T ss_pred HHHhcccCCCCeEEECCCC----CC----HHHHHHHHHhcc-C-CCeEEEEECCHHHHHHHHHHHH
Confidence 3444444567899999974 44 233344443111 2 4799999998777776665544
No 182
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=20.91 E-value=5.3e+02 Score=24.95 Aligned_cols=111 Identities=8% Similarity=0.108 Sum_probs=58.4
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHh-c-CCceEEEeecCCccc
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKT-Y-GINLEFSVVESNLEN 331 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~-l-gvpFeF~~V~~~lE~ 331 (514)
.-+|+|+|.|-| .+...|+.+. | .-+||+|+.+...++...+++.+.... + +-.++|.. ....+
T Consensus 78 ~~~VLdiG~G~G--------~~~~~l~~~~---~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~--~D~~~ 143 (314)
T 1uir_A 78 PKRVLIVGGGEG--------ATLREVLKHP---T-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVI--DDARA 143 (314)
T ss_dssp CCEEEEEECTTS--------HHHHHHTTST---T-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEE--SCHHH
T ss_pred CCeEEEEcCCcC--------HHHHHHHhcC---C-CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEE--chHHH
Confidence 358999997533 2455566553 3 469999999888887777776554332 2 22344432 11111
Q ss_pred -cCcccccccCCcEEEEEeccccccccccccch--HHHHHHHH-HhcCCcEEEEEe
Q 040125 332 -LQTKDIKVLENEVLVVNSILQLHCVVKESRGA--LNSVLQII-HELSPKVLVLVE 383 (514)
Q Consensus 332 -l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~--~~~~L~~I-r~L~PkVvvlvE 383 (514)
+.. .-..=++|+++... |.-.+..... ...|++.+ +.|+|.-++++.
T Consensus 144 ~l~~---~~~~fD~Ii~d~~~--~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 194 (314)
T 1uir_A 144 YLER---TEERYDVVIIDLTD--PVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (314)
T ss_dssp HHHH---CCCCEEEEEEECCC--CBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHh---cCCCccEEEECCCC--cccccCcchhccHHHHHHHHHHhcCCCcEEEEE
Confidence 110 00112567776543 3200000111 24566665 568998666664
No 183
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=20.68 E-value=2e+02 Score=26.26 Aligned_cols=58 Identities=21% Similarity=0.151 Sum_probs=36.8
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHH
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKD 311 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~ 311 (514)
..|++.+.-...-+|+|+|.| .| .+...|+.+-+ | ..++++|+.+.+.++.+.+++.+
T Consensus 83 ~~i~~~~~~~~~~~vldiG~G----~G----~~~~~l~~~~~--~-~~~v~~~D~~~~~~~~a~~~~~~ 140 (255)
T 3mb5_A 83 ALIVAYAGISPGDFIVEAGVG----SG----ALTLFLANIVG--P-EGRVVSYEIREDFAKLAWENIKW 140 (255)
T ss_dssp HHHHHHTTCCTTCEEEEECCT----TS----HHHHHHHHHHC--T-TSEEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCCCCEEEEecCC----ch----HHHHHHHHHhC--C-CeEEEEEecCHHHHHHHHHHHHH
Confidence 356666655556689999974 33 23334444311 2 36999999988777777666544
No 184
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=20.60 E-value=2e+02 Score=26.75 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=37.8
Q ss_pred HHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHH
Q 040125 243 SSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDY 312 (514)
Q Consensus 243 qAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~f 312 (514)
..|++.+.-...-.|+|+|.+. |. +...|+.+-+ | ..++++|+.+.+.++.+.+++.++
T Consensus 89 ~~i~~~~~~~~~~~vLdiG~G~----G~----~~~~l~~~~~--~-~~~v~~vD~~~~~~~~a~~~~~~~ 147 (280)
T 1i9g_A 89 AQIVHEGDIFPGARVLEAGAGS----GA----LTLSLLRAVG--P-AGQVISYEQRADHAEHARRNVSGC 147 (280)
T ss_dssp HHHHHHTTCCTTCEEEEECCTT----SH----HHHHHHHHHC--T-TSEEEEECSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCEEEEEcccc----cH----HHHHHHHHhC--C-CCEEEEEeCCHHHHHHHHHHHHHh
Confidence 4566666544555899999743 32 3344554321 2 369999999888887777766554
No 185
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=20.56 E-value=1.4e+02 Score=25.55 Aligned_cols=50 Identities=24% Similarity=0.373 Sum_probs=34.4
Q ss_pred EEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCce
Q 040125 256 HVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINL 320 (514)
Q Consensus 256 HIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpF 320 (514)
=|||++-. ....+|..|++.|.++ .|++-||....+. .+.+.|+..|+|+
T Consensus 50 VVlDl~~l---~~~~dl~~L~~~l~~~------gl~~vGV~g~~~~------~~~~~a~~~GLp~ 99 (120)
T 3ghf_A 50 VVINVSGL---ESPVNWPELHKIVTST------GLRIIGVSGCKDA------SLKVEIDRMGLPL 99 (120)
T ss_dssp EEEEEEEC---CSSCCHHHHHHHHHTT------TCEEEEEESCCCH------HHHHHHHHHTCCE
T ss_pred EEEEcccc---CChHHHHHHHHHHHHc------CCEEEEEeCCCcH------HHHHHHHHCCCCc
Confidence 37888742 2457999999999875 3888888753322 2235677889984
No 186
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=20.46 E-value=2.7e+02 Score=23.72 Aligned_cols=106 Identities=12% Similarity=0.121 Sum_probs=54.6
Q ss_pred eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCc--eEEEeecCCccc
Q 040125 254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGIN--LEFSVVESNLEN 331 (514)
Q Consensus 254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvp--FeF~~V~~~lE~ 331 (514)
.-+|+|+|.|.| . +...++.++ .-++|+|+.+...++.+.+++.. .|++ .+|.. ..+.+
T Consensus 45 ~~~vLD~GcG~G----~----~~~~~~~~~-----~~~v~~vD~~~~~~~~a~~~~~~----~~~~~~~~~~~--~d~~~ 105 (187)
T 2fhp_A 45 GGMALDLYSGSG----G----LAIEAVSRG-----MDKSICIEKNFAALKVIKENIAI----TKEPEKFEVRK--MDANR 105 (187)
T ss_dssp SCEEEETTCTTC----H----HHHHHHHTT-----CSEEEEEESCHHHHHHHHHHHHH----HTCGGGEEEEE--SCHHH
T ss_pred CCCEEEeCCccC----H----HHHHHHHcC-----CCEEEEEECCHHHHHHHHHHHHH----hCCCcceEEEE--CcHHH
Confidence 348999997533 2 222244432 25899999988777766665443 3543 55543 22222
Q ss_pred cCccccc--ccCCcEEEEEeccccccccccccchHHHHHHHH---HhcCCcEEEEEeecCC
Q 040125 332 LQTKDIK--VLENEVLVVNSILQLHCVVKESRGALNSVLQII---HELSPKVLVLVEQDSS 387 (514)
Q Consensus 332 l~~~~l~--~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I---r~L~PkVvvlvE~ea~ 387 (514)
..+. +. -..=+.|+.|..+..+ ....++..+ +-|+|.-+++++....
T Consensus 106 ~~~~-~~~~~~~fD~i~~~~~~~~~--------~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 106 ALEQ-FYEEKLQFDLVLLDPPYAKQ--------EIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp HHHH-HHHTTCCEEEEEECCCGGGC--------CHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred HHHH-HHhcCCCCCEEEECCCCCch--------hHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 1110 00 0111466666554211 123344444 5589987777765544
No 187
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=20.44 E-value=4.2e+02 Score=24.96 Aligned_cols=95 Identities=11% Similarity=0.078 Sum_probs=50.4
Q ss_pred EEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCC-ceEEEeecCCccccCc
Q 040125 256 HVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGI-NLEFSVVESNLENLQT 334 (514)
Q Consensus 256 HIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgv-pFeF~~V~~~lE~l~~ 334 (514)
.|+|+|-+. |.- -..||.+. + .-++|+|+.+...++.+.+++ +..|+ +.+| +....+++ +
T Consensus 122 ~VLDlgcG~----G~~----s~~la~~~--~--~~~V~~vD~s~~av~~a~~n~----~~n~l~~~~~--~~~d~~~~-~ 182 (272)
T 3a27_A 122 VVVDMFAGI----GYF----TIPLAKYS--K--PKLVYAIEKNPTAYHYLCENI----KLNKLNNVIP--ILADNRDV-E 182 (272)
T ss_dssp EEEETTCTT----TTT----HHHHHHHT--C--CSEEEEEECCHHHHHHHHHHH----HHTTCSSEEE--EESCGGGC-C
T ss_pred EEEEecCcC----CHH----HHHHHHhC--C--CCEEEEEeCCHHHHHHHHHHH----HHcCCCCEEE--EECChHHc-C
Confidence 689999753 321 22344432 1 258999998887777666553 44565 3443 33334333 2
Q ss_pred ccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEE
Q 040125 335 KDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLV 382 (514)
Q Consensus 335 ~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkVvvlv 382 (514)
. ...=++|++|.... ....+...++.|+|.-++++
T Consensus 183 ~---~~~~D~Vi~d~p~~----------~~~~l~~~~~~LkpgG~l~~ 217 (272)
T 3a27_A 183 L---KDVADRVIMGYVHK----------THKFLDKTFEFLKDRGVIHY 217 (272)
T ss_dssp C---TTCEEEEEECCCSS----------GGGGHHHHHHHEEEEEEEEE
T ss_pred c---cCCceEEEECCccc----------HHHHHHHHHHHcCCCCEEEE
Confidence 1 11124666664431 11234445678999755444
No 188
>1yz7_A Probable translation initiation factor 2 alpha subunit; helical domain, alpha-beta domain; 2.26A {Pyrococcus abyssi}
Probab=20.22 E-value=1.5e+02 Score=27.63 Aligned_cols=41 Identities=27% Similarity=0.269 Sum_probs=33.8
Q ss_pred CCCCcEEEeEecCCh----hHHHHHHHHHHHHHHhcCCceEEEeec
Q 040125 285 QPPRRLRITAVGLCV----EKFQSIGDELKDYAKTYGINLEFSVVE 326 (514)
Q Consensus 285 gpP~~LRIT~I~~~~----~~l~etg~rL~~fA~~lgvpFeF~~V~ 326 (514)
||| .-|||...++. ..|+++.+.+.+..+..|-.|.|+--.
T Consensus 133 gaP-~Y~i~~~~~Dkk~g~~~L~~aie~i~~~I~~~gG~~~v~r~~ 177 (188)
T 1yz7_A 133 GAP-RYRIDITAPDYYKAEEVLESIAEEILRVIKEAGGEATLLRKE 177 (188)
T ss_dssp STT-EEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCc-EEEEEEeeCCHHHHHHHHHHHHHHHHHHHHHhCCEEEEEEcH
Confidence 467 78888888763 478889999999999999999998643
Done!