Query 040128
Match_columns 232
No_of_seqs 124 out of 277
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 05:23:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040128.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040128hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05241 EBP: Emopamil binding 100.0 7.2E-60 1.6E-64 406.4 13.3 183 43-225 4-192 (194)
2 KOG4826 C-8,7 sterol isomerase 100.0 6.9E-51 1.5E-55 351.4 12.7 179 46-225 34-216 (229)
3 PF10914 DUF2781: Protein of u 94.0 0.0015 3.2E-08 54.2 -6.1 102 116-217 46-149 (150)
4 PF01299 Lamp: Lysosome-associ 48.7 18 0.00038 33.1 3.2 42 19-64 259-300 (306)
5 PF01102 Glycophorin_A: Glycop 42.0 25 0.00055 28.7 2.7 28 35-62 65-92 (122)
6 TIGR03052 PS_I_psaI photosyste 27.9 86 0.0019 19.8 2.9 27 199-225 2-28 (31)
7 PRK11877 psaI photosystem I re 22.8 51 0.0011 21.8 1.2 30 196-225 6-35 (38)
8 TIGR01528 NMN_trans_PnuC nicot 20.5 77 0.0017 27.1 2.2 38 134-171 5-50 (189)
9 PF05620 DUF788: Protein of un 16.9 54 0.0012 27.6 0.4 17 201-217 119-135 (170)
10 CHL00186 psaI photosystem I su 15.4 1.5E+02 0.0033 19.3 2.2 28 198-225 4-31 (36)
No 1
>PF05241 EBP: Emopamil binding protein ; InterPro: IPR007905 Emopamil binding protein (EBP) is a nonglycosylated type I integral membrane protein of endoplasmic reticulum and shows high level expression in epithelial tissues. The EBP protein has emopamil binding domains, including the sterol acceptor site and the catalytic centre, which show Delta8-Delta7 sterol isomerase activity. Human sterol isomerase, a homologue of mouse EBP, is suggested not only to play a role in cholesterol biosynthesis, but also to affect lipoprotein internalisation. In humans, mutations of EBP are known to cause the genetic disorder of X-linked dominant chondrodysplasia punctata (CDPX2). This syndrome of humans is lethal in most males, and affected females display asymmetric hyperkeratotic skin and skeletal abnormalities [].; GO: 0047750 cholestenol delta-isomerase activity, 0016125 sterol metabolic process, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=100.00 E-value=7.2e-60 Score=406.39 Aligned_cols=183 Identities=39% Similarity=0.734 Sum_probs=170.2
Q ss_pred HHhHHHHHHhhhhhhhcccC-CCCCccchHHHHHHHhhcceeeEEEeeEEEecccccCCccchhhhhhhhhccccccccc
Q 040128 43 YTCCLWTCLFVRRLPYQGKV-PKISKTDRWLMCWWAFTGLTHIILEGYFAFSPEFYKDKSGFYLAEVWKEYSKGDSRYAA 121 (232)
Q Consensus 43 y~~~~~~~i~~~~~~~s~~~-~~ls~~dr~~~~Wf~~~gliHl~~EG~Fv~~~~~~~~~~~~~~~~LWkeYa~~DsRY~~ 121 (232)
.++++++++++++++++++. |++++.||++++||++||+||+++||+|+++++++++.++++++|+||||+++|+||++
T Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~W~~~~~~iH~~~eG~f~~~~~~~~~~~~~~~~~lWkeYa~~D~RY~~ 83 (194)
T PF05241_consen 4 IFLAGCAAVLLIAYLLSRRLPPSLSKGDRFVFLWFALDGLIHFFLEGYFVYFRPFSPGTSQSLLAQLWKEYAKADSRYLT 83 (194)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHhhHHheEeeehheechhccccccchHHHHHHHHccCCccccc
Confidence 34456777777777777655 89999999999999999999999999999999999885556999999999999999999
Q ss_pred cCCcEEEEehhHHHhhhhHHHHHHHHHHhCCCchhhHHHhhhhhhhccceEEEEeeeccC----CCCC-CCcceeeeeeE
Q 040128 122 RDAGVVAVEGITAVLEGPASLLSVYAIATGKSYSYILQFAISLGQLYGTAVYFMTSYLEG----DNFA-ASPYYYNLYYI 196 (232)
Q Consensus 122 ~D~~vv~~E~it~lv~GPL~l~~~~~i~~~~~~r~~l~ivvsv~qLyGtvlYf~te~~~G----~~~~-~n~~yfW~yfV 196 (232)
+|++++|+|++|+++|||+|+++++++.+++++||++|+++|++|+|||+|||+||+++| .+++ +|++|||+|||
T Consensus 84 ~D~~vv~~e~~t~l~~Gpl~l~~~~~i~~~~~~r~~l~i~vs~~qlygtvlyf~~e~~~g~~~~~~~~~~~~ly~W~y~v 163 (194)
T PF05241_consen 84 SDPFVVCMESITVLLEGPLCLLAAYLIAKRSPYRHFLQIVVSVMQLYGTVLYFATEWLEGFVHSPNFSTPEPLYFWFYFV 163 (194)
T ss_pred CCCcEEeehhHHHHHHhHHHHHHHHHHHhCchHHHHHHHHHHHHhhheeeEEEEEHhhccCcCCccCCCCChhhheeehh
Confidence 999999999999999999999999999999999999999999999999999999999999 3445 89999999999
Q ss_pred eeCcceeechHHHHHHHHHHHHhhhhhhc
Q 040128 197 GANASWVVIPSLIAIRCWKKICAAPQLQG 225 (232)
Q Consensus 197 ~~N~iWIvvP~~ll~~s~~~i~~a~~~~~ 225 (232)
+||++||++|++++++|+++|+++++..+
T Consensus 164 ~~N~iWivvP~~~l~~s~~~i~~a~~~~~ 192 (194)
T PF05241_consen 164 FPNGIWIVVPLLLLYQSWKEIARAFRAAQ 192 (194)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999998876
No 2
>KOG4826 consensus C-8,7 sterol isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=6.9e-51 Score=351.41 Aligned_cols=179 Identities=45% Similarity=0.818 Sum_probs=164.2
Q ss_pred HHHHHHhhhhhhhcccCCCCCccchHHHHHHHhhcceeeEEEeeEEEecccccCC-ccchhhhhhhhhccccccccccCC
Q 040128 46 CLWTCLFVRRLPYQGKVPKISKTDRWLMCWWAFTGLTHIILEGYFAFSPEFYKDK-SGFYLAEVWKEYSKGDSRYAARDA 124 (232)
Q Consensus 46 ~~~~~i~~~~~~~s~~~~~ls~~dr~~~~Wf~~~gliHl~~EG~Fv~~~~~~~~~-~~~~~~~LWkeYa~~DsRY~~~D~ 124 (232)
+++.+++.++|+++++. .-...|+|+.+|+++||+||+.+||||++.|.+..+. .++.++++||||||+|+||...|+
T Consensus 34 ~~~~l~v~~~~lls~~~-~~~~L~~w~l~Wl~vsGlih~v~egyfv~~p~~~~~~~~s~~L~~~WKeYsk~D~RYv~~d~ 112 (229)
T KOG4826|consen 34 SVTLLLVVTTWLLSGRA-AVVVLDKWVLCWLAVSGLIHLVLEGYFVFRPETNLPANSSALLAQLWKEYSKGDSRYVLTDD 112 (229)
T ss_pred HHHHHHHHHHHHHhCCC-CCCCCcchhhHHHHhhCeeeeEEEeeEEeeecccCCccHHHHHHHHHHHhcccceeEeccCC
Confidence 35556668888888775 2356899999999999999999999999999876544 566999999999999999999999
Q ss_pred cEEEEehhHHHhhhhHHHHHHHHHHhCCCchhhHHHhhhhhhhccceEEEEeeeccCCCC--C-CCcceeeeeeEeeCcc
Q 040128 125 GVVAVEGITAVLEGPASLLSVYAIATGKSYSYILQFAISLGQLYGTAVYFMTSYLEGDNF--A-ASPYYYNLYYIGANAS 201 (232)
Q Consensus 125 ~vv~~E~it~lv~GPL~l~~~~~i~~~~~~r~~l~ivvsv~qLyGtvlYf~te~~~G~~~--~-~n~~yfW~yfV~~N~i 201 (232)
+++|+|++|+++|||+++++++++.++|++|+++|+++|++|+|||+|||.||+.+|+++ . +|++|+|+|++|||++
T Consensus 113 ~vvc~eg~t~~l~g~Lsl~aIya~~k~~~~~~lLq~t~sV~~lyg~~lyFl~~~~~~~~~~~~~~N~~Y~~~yliF~Ngv 192 (229)
T KOG4826|consen 113 VVVCVEGITALLEGPLSLLAIYAILKEKRYRLLLQLTVSVCQLYGCVLYFLTEILDGFGHGLFTGNPLYFWFYLIFPNGV 192 (229)
T ss_pred cEEeeeeehhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCCCceeeeEeEeecCce
Confidence 999999999999999999999999999999999999999999999999999999999986 3 9999999999999999
Q ss_pred eeechHHHHHHHHHHHHhhhhhhc
Q 040128 202 WVVIPSLIAIRCWKKICAAPQLQG 225 (232)
Q Consensus 202 WIvvP~~ll~~s~~~i~~a~~~~~ 225 (232)
|+++|.++++++|++++.+.+.++
T Consensus 193 WVliP~Lll~~~W~kL~~~~~~~e 216 (229)
T KOG4826|consen 193 WVLIPGLLLFDLWKKLALAQSTLE 216 (229)
T ss_pred eeehhHHHHHHHHHHHhhHHHHhh
Confidence 999999999999999999987665
No 3
>PF10914 DUF2781: Protein of unknown function (DUF2781); InterPro: IPR016964 This group represents a predicted transmembrane protein 97.
Probab=93.98 E-value=0.0015 Score=54.21 Aligned_cols=102 Identities=16% Similarity=0.205 Sum_probs=64.8
Q ss_pred cccccccCCcEEEEehhHHHhhhhHHHHHHHHHHhC-CCchhhHHHhhhhhhhccceEEEEeeeccCCCCC-CCcceeee
Q 040128 116 DSRYAARDAGVVAVEGITAVLEGPASLLSVYAIATG-KSYSYILQFAISLGQLYGTAVYFMTSYLEGDNFA-ASPYYYNL 193 (232)
Q Consensus 116 DsRY~~~D~~vv~~E~it~lv~GPL~l~~~~~i~~~-~~~r~~l~ivvsv~qLyGtvlYf~te~~~G~~~~-~n~~yfW~ 193 (232)
|.=..+.-.+..+.-.++.++-.|+.++.++...++ ++.-..+.++-++.....|+-..+.-+..|.... +..--.+-
T Consensus 46 D~l~~~~p~wf~~f~~~El~~qlP~~~~~~~~l~~~~~~~~~~~~lvYg~~~~~Tt~~cl~~~~~~~~~~~~~~~~~~~~ 125 (150)
T PF10914_consen 46 DPLMADPPPWFKSFVWIELFFQLPFFFYAIYALLKGGSPWIRLLLLVYGVHVATTTLPCLGEVLHGGTWPDLSSPQKARW 125 (150)
T ss_pred CCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHH
Confidence 433333334555667788889999999999999988 6664555444444444444333333333332222 33333444
Q ss_pred eeEeeCcceeechHHHHHHHHHHH
Q 040128 194 YYIGANASWVVIPSLIAIRCWKKI 217 (232)
Q Consensus 194 yfV~~N~iWIvvP~~ll~~s~~~i 217 (232)
.+...|++++++|.++.++.+.++
T Consensus 126 ~l~~~Y~Py~liP~~~~~~m~~r~ 149 (150)
T PF10914_consen 126 LLLAIYLPYLLIPLLMALDMFRRL 149 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Confidence 566899999999999999988764
No 4
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=48.75 E-value=18 Score=33.14 Aligned_cols=42 Identities=7% Similarity=0.084 Sum_probs=31.6
Q ss_pred CCccccccccccCCchHHHHHHHHHHhHHHHHHhhhhhhhcccCCC
Q 040128 19 NEPSVCAQRSESGGLRAQLALAVHYTCCLWTCLFVRRLPYQGKVPK 64 (232)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~i~~~~~~~s~~~~~ 64 (232)
.+...|.+... +.=+-+.++.+++++.+|++.+|++.||+++
T Consensus 259 g~a~~C~~D~~----~~~vPIaVG~~La~lvlivLiaYli~Rrr~~ 300 (306)
T PF01299_consen 259 GTAEECSSDDT----SDLVPIAVGAALAGLVLIVLIAYLIGRRRSR 300 (306)
T ss_pred CChhcCCcCCc----cchHHHHHHHHHHHHHHHHHHhheeEecccc
Confidence 34567765433 4557888999999998888999999888754
No 5
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=42.03 E-value=25 Score=28.67 Aligned_cols=28 Identities=4% Similarity=-0.049 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhhhcccC
Q 040128 35 AQLALAVHYTCCLWTCLFVRRLPYQGKV 62 (232)
Q Consensus 35 ~~~~~~~~y~~~~~~~i~~~~~~~s~~~ 62 (232)
.+..+-++-.++.+++|++.+|++.|+.
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677777777777777778888886665
No 6
>TIGR03052 PS_I_psaI photosystem I reaction center subunit VIII. Members of this protein family are PsaI, subunit VIII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen.
Probab=27.89 E-value=86 Score=19.83 Aligned_cols=27 Identities=4% Similarity=-0.194 Sum_probs=17.4
Q ss_pred CcceeechHHHHHHHHHHHHhhhhhhc
Q 040128 199 NASWVVIPSLIAIRCWKKICAAPQLQG 225 (232)
Q Consensus 199 N~iWIvvP~~ll~~s~~~i~~a~~~~~ 225 (232)
|.+||+||+.-+.--.-.++--+...+
T Consensus 2 ~LPsI~VPlVglvfPai~Ma~lf~yIe 28 (31)
T TIGR03052 2 WLPSIFVPLVGLVFPAVFMALLFRYIE 28 (31)
T ss_pred CCceeehhHHHHHHHHHHHHHHHHhee
Confidence 678999998766655444544444443
No 7
>PRK11877 psaI photosystem I reaction center subunit VIII; Reviewed
Probab=22.77 E-value=51 Score=21.79 Aligned_cols=30 Identities=7% Similarity=0.017 Sum_probs=19.1
Q ss_pred EeeCcceeechHHHHHHHHHHHHhhhhhhc
Q 040128 196 IGANASWVVIPSLIAIRCWKKICAAPQLQG 225 (232)
Q Consensus 196 V~~N~iWIvvP~~ll~~s~~~i~~a~~~~~ 225 (232)
...|.+||+||+.-+.--.-.++--+...+
T Consensus 6 aas~LPsI~VPlVGlvfPai~Mallf~yIe 35 (38)
T PRK11877 6 AASWLPWIFVPLVGWVFPAVFMVLLGRYIT 35 (38)
T ss_pred hHHhCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346889999998766654444444444443
No 8
>TIGR01528 NMN_trans_PnuC nicotinamide mononucleotide transporter PnuC. The PnuC protein of E. coli is membrane protein responsible for nicotinamide mononucleotide transport, subject to regulation by interaction with the NadR (also called NadI) protein (see TIGR01526). This model defines a region corresponding to most of the length of PnuC, found primarily in pathogens. The extreme N- and C-terminal regions are poorly conserved and not included in the alignment and model.
Probab=20.50 E-value=77 Score=27.11 Aligned_cols=38 Identities=24% Similarity=0.439 Sum_probs=28.7
Q ss_pred HHhhhhHHHHHHHHHHhCCCchhhHHHhhhh--------hhhccce
Q 040128 134 AVLEGPASLLSVYAIATGKSYSYILQFAISL--------GQLYGTA 171 (232)
Q Consensus 134 ~lv~GPL~l~~~~~i~~~~~~r~~l~ivvsv--------~qLyGtv 171 (232)
.++.+.++++++++..++|....+++++.++ .++||+.
T Consensus 5 e~~a~i~g~~~v~l~~k~~~~~w~~Giis~~ly~~i~~~~~lYgd~ 50 (189)
T TIGR01528 5 ELIAGLMGILCVVLASEGKVSNYIFGLISAVIYLYIAYQTGLYAEV 50 (189)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677888888888999988887777665 5777775
No 9
>PF05620 DUF788: Protein of unknown function (DUF788); InterPro: IPR008506 This family consists of several eukaryotic proteins of unknown function.
Probab=16.86 E-value=54 Score=27.65 Aligned_cols=17 Identities=29% Similarity=0.649 Sum_probs=15.6
Q ss_pred ceeechHHHHHHHHHHH
Q 040128 201 SWVVIPSLIAIRCWKKI 217 (232)
Q Consensus 201 iWIvvP~~ll~~s~~~i 217 (232)
+|++||++.++..|.-+
T Consensus 119 l~LvIP~ya~Ykl~~~i 135 (170)
T PF05620_consen 119 LYLVIPGYAIYKLWGLI 135 (170)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57899999999999988
No 10
>CHL00186 psaI photosystem I subunit VIII; Validated
Probab=15.40 E-value=1.5e+02 Score=19.33 Aligned_cols=28 Identities=7% Similarity=-0.049 Sum_probs=18.1
Q ss_pred eCcceeechHHHHHHHHHHHHhhhhhhc
Q 040128 198 ANASWVVIPSLIAIRCWKKICAAPQLQG 225 (232)
Q Consensus 198 ~N~iWIvvP~~ll~~s~~~i~~a~~~~~ 225 (232)
.|.+||+||+.-+.--.-.++--+...+
T Consensus 4 s~LPsI~VPlVGlvfPai~Ma~lf~yIe 31 (36)
T CHL00186 4 SNLPSILVPLVGLVFPAIAMASLFLYIQ 31 (36)
T ss_pred ccCchhHHhHHHHHHHHHHHHHHHHHhh
Confidence 5789999998766655444444444444
Done!