Query 040128
Match_columns 232
No_of_seqs 124 out of 277
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 08:09:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040128.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040128hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jb0_I Photosystem 1 reaction 17.9 47 0.0016 21.0 1.2 29 197-225 7-35 (38)
2 3w1s_C Ubiquitin-like protein 11.6 97 0.0033 22.8 1.6 26 87-113 49-75 (91)
3 2k9p_A Pheromone alpha factor 9.6 3.1E+02 0.011 19.6 3.7 29 34-62 18-46 (80)
4 1v92_A NSFL1 cofactor P47; 3-h 9.6 56 0.0019 20.2 -0.3 25 20-44 19-43 (46)
5 2dal_A Protein KIAA0794; FAS a 7.4 1.1E+02 0.0038 20.5 0.5 25 20-44 29-53 (62)
6 2zxe_G FXYD10, phospholemman-l 7.2 3.8E+02 0.013 19.1 3.2 29 34-62 15-43 (74)
7 3arc_T Photosystem II reaction 6.5 4.8E+02 0.016 15.7 3.0 27 41-67 4-31 (32)
8 1g0y_I Antagonist peptide AF10 6.4 1.1E+02 0.0039 17.3 0.0 10 106-115 11-20 (26)
9 1eo6_A GATE-16, golgi-associat 5.8 2.7E+02 0.0094 21.0 2.0 25 89-114 76-100 (117)
10 2dzl_A Protein FAM100B; UBA-li 5.7 1.5E+02 0.0052 20.3 0.4 25 20-44 31-55 (66)
No 1
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=17.86 E-value=47 Score=21.03 Aligned_cols=29 Identities=10% Similarity=0.047 Sum_probs=18.1
Q ss_pred eeCcceeechHHHHHHHHHHHHhhhhhhc
Q 040128 197 GANASWVVIPSLIAIRCWKKICAAPQLQG 225 (232)
Q Consensus 197 ~~N~iWIvvP~~ll~~s~~~i~~a~~~~~ 225 (232)
..|.+||+||+.-+.--.-.++--|...+
T Consensus 7 a~~LPsI~VPlVglvfPai~Mallf~yIe 35 (38)
T 1jb0_I 7 ASFLPWIFIPVVCWLMPTVVMGLLFLYIE 35 (38)
T ss_dssp TTTHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred hhhCChhhHhHHHHHHHHHHHHHHHHhhc
Confidence 35789999998766654444444444443
No 2
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=11.57 E-value=97 Score=22.76 Aligned_cols=26 Identities=12% Similarity=0.497 Sum_probs=20.0
Q ss_pred EeeEEEec-ccccCCccchhhhhhhhhc
Q 040128 87 EGYFAFSP-EFYKDKSGFYLAEVWKEYS 113 (232)
Q Consensus 87 EG~Fv~~~-~~~~~~~~~~~~~LWkeYa 113 (232)
|..|+|-. .+++..+. .+++||+.|.
T Consensus 49 ~alFlyVNn~f~Ps~d~-~~~~Ly~~fk 75 (91)
T 3w1s_C 49 DHVYCYINNSFAPSPQQ-NIGELWMQFK 75 (91)
T ss_dssp SCCEEEETTTBCCCTTS-BHHHHHHHHC
T ss_pred ceEEEEECCccCCCccc-HHHHHHHHhC
Confidence 88898854 45676665 6899999997
No 3
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=9.59 E-value=3.1e+02 Score=19.63 Aligned_cols=29 Identities=3% Similarity=-0.181 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHhHHHHHHhhhhhhhcccC
Q 040128 34 RAQLALAVHYTCCLWTCLFVRRLPYQGKV 62 (232)
Q Consensus 34 ~~~~~~~~~y~~~~~~~i~~~~~~~s~~~ 62 (232)
+.|.++.-+--+++.++.++..|++++++
T Consensus 18 ~~~~~I~~G~~iGAs~llliil~lltkkr 46 (80)
T 2k9p_A 18 TVTQAILFGVRSGAAALTLIVVWITSRSR 46 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 35566665655666656667888888753
No 4
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=9.58 E-value=56 Score=20.16 Aligned_cols=25 Identities=36% Similarity=0.337 Sum_probs=20.5
Q ss_pred CccccccccccCCchHHHHHHHHHH
Q 040128 20 EPSVCAQRSESGGLRAQLALAVHYT 44 (232)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~y~ 44 (232)
.+.++.+--++-+-|+|.|++.+|-
T Consensus 19 ~~~~A~~~L~~~~wdle~Ai~~ff~ 43 (46)
T 1v92_A 19 EEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp CHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 3567777778888999999999885
No 5
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=7.44 E-value=1.1e+02 Score=20.55 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=21.1
Q ss_pred CccccccccccCCchHHHHHHHHHH
Q 040128 20 EPSVCAQRSESGGLRAQLALAVHYT 44 (232)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~y~ 44 (232)
++.+|.+--|.-+-|+|.|+..+|-
T Consensus 29 ~~~~A~~~Le~~~WnLe~Av~~ff~ 53 (62)
T 2dal_A 29 SESVGKHMLEACNNNLEMAVTMFLD 53 (62)
T ss_dssp CHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 3677888888889999999999885
No 6
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=7.17 E-value=3.8e+02 Score=19.11 Aligned_cols=29 Identities=14% Similarity=0.041 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHhHHHHHHhhhhhhhcccC
Q 040128 34 RAQLALAVHYTCCLWTCLFVRRLPYQGKV 62 (232)
Q Consensus 34 ~~~~~~~~~y~~~~~~~i~~~~~~~s~~~ 62 (232)
|-|++=--+-.+++++.++....++|+|.
T Consensus 15 DY~tLRigGLifA~vLfi~GI~iilS~kc 43 (74)
T 2zxe_G 15 DYYRLRVVGLIVAAVLCVIGIIILLAGKC 43 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred chHHheeccchhHHHHHHHHHHHHHcCcc
Confidence 44554444445556666777777888876
No 7
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=6.54 E-value=4.8e+02 Score=15.72 Aligned_cols=27 Identities=15% Similarity=0.221 Sum_probs=11.6
Q ss_pred HHHHhHHHHHHhhhhhhhc-ccCCCCCc
Q 040128 41 VHYTCCLWTCLFVRRLPYQ-GKVPKISK 67 (232)
Q Consensus 41 ~~y~~~~~~~i~~~~~~~s-~~~~~ls~ 67 (232)
+.|++..++.+.+....+. |..|++.+
T Consensus 4 ~vYt~ll~~tlgiiFFAI~FRePPri~~ 31 (32)
T 3arc_T 4 ITYVFIFACIIALFFFAIFFREPPRITK 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCCCC-
T ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCC
Confidence 4555544444443333333 33366543
No 8
>1g0y_I Antagonist peptide AF10847; immunoglobulin, immune system; 3.00A {Homo sapiens} SCOP: k.19.1.1
Probab=6.37 E-value=1.1e+02 Score=17.34 Aligned_cols=10 Identities=30% Similarity=0.634 Sum_probs=7.6
Q ss_pred hhhhhhhccc
Q 040128 106 AEVWKEYSKG 115 (232)
Q Consensus 106 ~~LWkeYa~~ 115 (232)
+..|++|++-
T Consensus 11 ayywqpyalp 20 (26)
T 1g0y_I 11 AYYWQPYALP 20 (26)
T ss_dssp HHEECTTCCC
T ss_pred ceeecccccc
Confidence 5689999864
No 9
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=5.75 E-value=2.7e+02 Score=20.97 Aligned_cols=25 Identities=12% Similarity=0.212 Sum_probs=17.4
Q ss_pred eEEEecccccCCccchhhhhhhhhcc
Q 040128 89 YFAFSPEFYKDKSGFYLAEVWKEYSK 114 (232)
Q Consensus 89 ~Fv~~~~~~~~~~~~~~~~LWkeYa~ 114 (232)
.|+|....++..+. .+++|+++|..
T Consensus 76 lfl~vn~~~p~~~~-~m~~LY~~~kd 100 (117)
T 1eo6_A 76 IFLFVDKTVPQSSL-TMGQLYEKEKD 100 (117)
T ss_dssp CEEEBTTBCCCTTS-BHHHHHHHHCC
T ss_pred EEEEECCEecCccc-hHHHHHHHhCC
Confidence 46666666666555 68999999843
No 10
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=5.75 E-value=1.5e+02 Score=20.25 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=20.5
Q ss_pred CccccccccccCCchHHHHHHHHHH
Q 040128 20 EPSVCAQRSESGGLRAQLALAVHYT 44 (232)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~y~ 44 (232)
.+.++.|--|+-+-|++.|++.+|-
T Consensus 31 ~~~~A~~~Le~~~WdLe~Al~~ff~ 55 (66)
T 2dzl_A 31 AADQAKQLLQAAHWQFETALSTFFQ 55 (66)
T ss_dssp CHHHHHHHHHTTTTCHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4566777788889999999999884
Done!