Query 040128
Match_columns 232
No_of_seqs 124 out of 277
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 08:09:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040128.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040128hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v92a_ a.5.2.3 (A:) NSFL1 (p9 9.3 27 0.002 20.9 -0.3 25 20-44 19-43 (46)
2 d2zdra1 b.85.1.1 (A:282-349) C 6.0 1.4E+02 0.0099 18.5 2.1 33 4-36 10-42 (68)
3 d1r3jc_ f.14.1.1 (C:) Potassiu 5.5 1.1E+02 0.008 20.3 1.4 31 201-231 73-103 (103)
4 d1r44a_ d.65.1.4 (A:) D-Ala-D- 4.6 85 0.0062 24.2 0.3 14 114-127 16-29 (202)
5 d1jb0i_ f.23.17.1 (I:) Subunit 4.6 60 0.0044 18.9 -0.5 9 200-208 10-18 (38)
6 d1prtc2 d.169.1.2 (C:4-89) Per 4.5 96 0.007 20.6 0.4 17 107-123 47-63 (86)
7 d2nn6g3 d.51.1.1 (G:195-274) R 4.0 1.3E+02 0.0093 19.9 0.7 13 195-207 35-48 (80)
8 d1e50b_ b.54.1.1 (B:) Core bin 3.9 1.5E+02 0.011 21.6 1.2 12 196-207 100-111 (134)
9 d1prtb2 d.169.1.2 (B:4-89) Per 3.8 96 0.007 20.6 -0.1 16 107-122 47-62 (86)
10 d1jsga_ b.63.1.1 (A:) p14-TCL1 3.6 1.1E+02 0.0081 21.7 0.2 22 104-127 68-89 (111)
No 1
>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.34 E-value=27 Score=20.94 Aligned_cols=25 Identities=36% Similarity=0.337 Sum_probs=19.8
Q ss_pred CccccccccccCCchHHHHHHHHHH
Q 040128 20 EPSVCAQRSESGGLRAQLALAVHYT 44 (232)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~y~ 44 (232)
.|.+..+--|+-+-|+|.|++.+|=
T Consensus 19 ~~~~A~~~Le~~~w~Le~Ai~~yfe 43 (46)
T d1v92a_ 19 EEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp CHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCcHHHHHHHHHh
Confidence 3456667778888999999999884
No 2
>d2zdra1 b.85.1.1 (A:282-349) Capsule biosynthesis protein SiaC, C-terminal domain {Neisseria meningitidis [TaxId: 487]}
Probab=6.04 E-value=1.4e+02 Score=18.52 Aligned_cols=33 Identities=9% Similarity=0.156 Sum_probs=23.1
Q ss_pred cccccccccccccccCCccccccccccCCchHH
Q 040128 4 RSIANLVSLPRRREENEPSVCAQRSESGGLRAQ 36 (232)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (232)
|||.---.++.-..-++-.++..|..+|||...
T Consensus 10 rSiva~~~I~kG~~i~~~dl~~~RP~~ggi~p~ 42 (68)
T d2zdra1 10 ASVVADKDIKKGELLSGDNLWVKRPGNGDFSVN 42 (68)
T ss_dssp CEEEESSCBCTTCBCCTTTEEEESCSCSSSBGG
T ss_pred eeEEEccccCCCCEecHHHeEEECCCCCcCCHh
Confidence 455555556665566777889999999988753
No 3
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=5.53 E-value=1.1e+02 Score=20.29 Aligned_cols=31 Identities=6% Similarity=-0.256 Sum_probs=15.7
Q ss_pred ceeechHHHHHHHHHHHHhhhhhhccccccc
Q 040128 201 SWVVIPSLIAIRCWKKICAAPQLQGQKKNKV 231 (232)
Q Consensus 201 iWIvvP~~ll~~s~~~i~~a~~~~~~~k~k~ 231 (232)
+|+++-..+..-....+...+...++||+||
T Consensus 73 ~~~~~Gi~~~~~~~~~i~~~~~~~~~~rr~h 103 (103)
T d1r3jc_ 73 VVMVAGITSFGLVTAALATWFVGREQERRGH 103 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444444444444455666665555455554
No 4
>d1r44a_ d.65.1.4 (A:) D-Ala-D-Ala dipeptidase VanX {Enterococcus faecium [TaxId: 1352]}
Probab=4.64 E-value=85 Score=24.23 Aligned_cols=14 Identities=29% Similarity=0.294 Sum_probs=11.9
Q ss_pred cccccccccCCcEE
Q 040128 114 KGDSRYAARDAGVV 127 (232)
Q Consensus 114 ~~DsRY~~~D~~vv 127 (232)
+.|-||++.|+|+-
T Consensus 16 ~~DlrYat~~NF~g 29 (202)
T d1r44a_ 16 RWDAKYATWDNFTG 29 (202)
T ss_dssp EECCGGGSSCSTTS
T ss_pred EEEeeeCcCCCcCC
Confidence 46999999999875
No 5
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=4.64 E-value=60 Score=18.86 Aligned_cols=9 Identities=33% Similarity=1.073 Sum_probs=7.0
Q ss_pred cceeechHH
Q 040128 200 ASWVVIPSL 208 (232)
Q Consensus 200 ~iWIvvP~~ 208 (232)
.+||++|..
T Consensus 10 LPwI~iPvv 18 (38)
T d1jb0i_ 10 LPWIFIPVV 18 (38)
T ss_dssp HHHHHHHHH
T ss_pred cchhHHHHH
Confidence 479999974
No 6
>d1prtc2 d.169.1.2 (C:4-89) Pertussis toxin, S2/S3 subunits, N-terminal domain {Bordetella pertussis [TaxId: 520]}
Probab=4.53 E-value=96 Score=20.64 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=13.8
Q ss_pred hhhhhhccccccccccC
Q 040128 107 EVWKEYSKGDSRYAARD 123 (232)
Q Consensus 107 ~LWkeYa~~DsRY~~~D 123 (232)
.-|.-|++.|.-|+.+.
T Consensus 47 ~gwsi~~lydgtylg~~ 63 (86)
T d1prtc2 47 PGWSIYGLYDGTYLGQA 63 (86)
T ss_dssp CTTCEEECSSSEEECTT
T ss_pred CCceEEEEeccceeccc
Confidence 35999999999998653
No 7
>d2nn6g3 d.51.1.1 (G:195-274) Ribosomal RNA-processing protein 40, RRP40 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.99 E-value=1.3e+02 Score=19.94 Aligned_cols=13 Identities=31% Similarity=0.624 Sum_probs=9.9
Q ss_pred eEeeCc-ceeechH
Q 040128 195 YIGANA-SWVVIPS 207 (232)
Q Consensus 195 fV~~N~-iWIvvP~ 207 (232)
-|++|| +||=-+.
T Consensus 35 avG~NGrVWvk~~~ 48 (80)
T d2nn6g3 35 VFGMNGRIWVKAKT 48 (80)
T ss_dssp EEETTTEEEECCSS
T ss_pred EEecCCeEEEeCCC
Confidence 578898 8987654
No 8
>d1e50b_ b.54.1.1 (B:) Core binding factor beta, CBF {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.93 E-value=1.5e+02 Score=21.63 Aligned_cols=12 Identities=17% Similarity=0.102 Sum_probs=9.1
Q ss_pred EeeCcceeechH
Q 040128 196 IGANASWVVIPS 207 (232)
Q Consensus 196 V~~N~iWIvvP~ 207 (232)
.+|||+||..=.
T Consensus 100 fImNGVCV~~rG 111 (134)
T d1e50b_ 100 MILNGVCVIWKG 111 (134)
T ss_dssp EEETTEEEEEEE
T ss_pred eeEcceEEEEEE
Confidence 479999987643
No 9
>d1prtb2 d.169.1.2 (B:4-89) Pertussis toxin, S2/S3 subunits, N-terminal domain {Bordetella pertussis [TaxId: 520]}
Probab=3.78 E-value=96 Score=20.64 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=13.3
Q ss_pred hhhhhhcccccccccc
Q 040128 107 EVWKEYSKGDSRYAAR 122 (232)
Q Consensus 107 ~LWkeYa~~DsRY~~~ 122 (232)
.-|.-|++.|.-|+.+
T Consensus 47 ~gwsi~~lydgtylg~ 62 (86)
T d1prtb2 47 RGWSIFALYDGTYLGG 62 (86)
T ss_dssp CSSCEEECSSEEEECG
T ss_pred CCceEEEEeccceecc
Confidence 3599999999999854
No 10
>d1jsga_ b.63.1.1 (A:) p14-TCL1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.63 E-value=1.1e+02 Score=21.71 Aligned_cols=22 Identities=32% Similarity=0.665 Sum_probs=17.2
Q ss_pred hhhhhhhhhccccccccccCCcEE
Q 040128 104 YLAEVWKEYSKGDSRYAARDAGVV 127 (232)
Q Consensus 104 ~~~~LWkeYa~~DsRY~~~D~~vv 127 (232)
.+.-+|+-| .+.||.++|+..-
T Consensus 68 ~LP~mWqLy--p~~rYr~sds~~W 89 (111)
T d1jsga_ 68 LLPIMWQLY--PDGRYRSSDSSFW 89 (111)
T ss_dssp SSCSEEEEC--TTSCEEETTSCEE
T ss_pred cCCceeeec--cCCeeecCCCceE
Confidence 566789999 6778888887654
Done!