BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040129
(333 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl
Methyltransferase (Samt)
Length = 359
Score = 157 bits (397), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 103/313 (32%), Positives = 163/313 (52%), Gaps = 28/313 (8%)
Query: 25 ADSSSNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDF 84
D+ + + +AD GC+ GPN A+ +LI+ V+ + + + +PE+ + ND NDF
Sbjct: 46 GDTVTTRLAIADLGCSSGPNALFAVTELIKTVE-ELRKKMGRENSPEYQIFLNDLPGNDF 104
Query: 85 NTLFTSLPQEIHF----FVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNS 140
N +F SLP E F+ GVPGSF+ RLFP LH +H SY+L WLS+VP G+
Sbjct: 105 NAIFRSLPIENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIES--- 161
Query: 141 PAWNKGRIHYA-FAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITN-PSIPDGMP 198
NKG I+ A P+ V+ AY QF +D FL RA+E+VPGG +++T +
Sbjct: 162 ---NKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRA 218
Query: 199 FSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEV 258
+E L++ + L MV GL+ E ++D FN+P Y P E A + + G+F I+
Sbjct: 219 STECC--LIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDH 276
Query: 259 MGLTNP--SPWLK-----GRINMPEY--IKHVRAATESMFNKHFSYEVTEEMFRQ----L 305
+ + S K G + Y + +RA E + HF + E++F + +
Sbjct: 277 IEASEIYWSSCTKDGDGGGSVEEEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKLLI 336
Query: 306 LERLEEINDKMVS 318
+ER+ + K ++
Sbjct: 337 IERMSKEKTKFIN 349
>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
pdb|3B5I|B Chain B, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
Length = 374
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 152/298 (51%), Gaps = 30/298 (10%)
Query: 36 DCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEI 95
D GC+ G NT + + +++ + ++ + + PEF F+D SNDFNTLF LP +
Sbjct: 58 DLGCSSGANTVHIIDFIVKHISKRFDAAGIDP--PEFTAFFSDLPSNDFNTLFQLLPPLV 115
Query: 96 H---------------FFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNS 140
+FVAGVPGSF++RLFP + + H +++LHWLS+VPE + D+ S
Sbjct: 116 SNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRS 175
Query: 141 PAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITNPSIPDGMPFS 200
A+N+GR+ A E AY QF DL FL RA E+ GG + + P
Sbjct: 176 AAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTD 235
Query: 201 EIANGLMYNCMGTILY-DMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVM 259
+ GL++ + D+V+ GL++ + D FN+P+YA +F VV+ NG+F I+ +
Sbjct: 236 QGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKL 295
Query: 260 GL-TNPSPWLKGRINMPE--------YIKHVRAATESMFNKHFSYEVTEEMFRQLLER 308
+ SP + +N P+ + R+ + H E++ ++F ++ R
Sbjct: 296 VVYKGGSPLV---VNEPDDASEVGRAFASSCRSVAGVLVEAHIGEELSNKLFSRVESR 350
>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|C Chain C, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|E Chain E, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|G Chain G, The Structure Of Xanthosine Methyltransferase
Length = 372
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 143/291 (49%), Gaps = 23/291 (7%)
Query: 32 IRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSL 91
I++AD GCA GPNT ++D+++ + + + + P + ND NDFN++F L
Sbjct: 55 IKVADLGCASGPNTLLTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFPNDFNSVFKLL 114
Query: 92 PQEIH------------FFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKN 139
P + +PGSF+ RLFPE+ +H +H Y L WLS+VP GL+ +
Sbjct: 115 PSFYRKLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSGLVTEL 174
Query: 140 SPAWNKGRIHYAFAPEV-VVKAYANQFAKDLERFLNNRAKEIVPGGMIIITNPSIPDGMP 198
NKG I+ + A + V KAY +QF KD FL ++E+ G +++T I G+
Sbjct: 175 GIGTNKGSIYSSKASRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRMLLT--CICKGV- 231
Query: 199 FSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEV 258
E+ + + + D+V G L E ++DSFNLP+Y E +VE G+F I
Sbjct: 232 --ELDARNAIDLLEMAINDLVVEGHLEEEKLDSFNLPVYIPSAEEVKCIVEEEGSFEILY 289
Query: 259 MG----LTNPSPWLKGRINMPEYI-KHVRAATESMFNKHFSYEVTEEMFRQ 304
+ L + + EY+ VRA E + HF + ++F +
Sbjct: 290 LETFKVLYDAGFSIDDEHIKAEYVASSVRAVYEPILASHFGEAIIPDIFHR 340
>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
Length = 384
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 140/275 (50%), Gaps = 29/275 (10%)
Query: 33 RLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLP 92
++ D GCA GPNTF+ ++D+++ + + + + P + ND NDFN++F LP
Sbjct: 55 KVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLP 114
Query: 93 QEIH------------FFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNS 140
+ +PGSF+ RLFPE+ +H +H Y LHWLS+VP GL+ +
Sbjct: 115 SFYRNLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELG 174
Query: 141 PAWNKGRIHYAFAPE-VVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITNPSIPDGMPF 199
+ NKG I+ + A + KAY +QF KD FL ++E++ G +++T D
Sbjct: 175 ISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKED---- 230
Query: 200 SEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVM 259
E + + + + D+V G L E ++DSFN+PIYA E +VE G+F I +
Sbjct: 231 -EFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYL 289
Query: 260 GLTNPSPW---------LKGRINMPEYI-KHVRAA 284
N +P+ +GR + P +H RAA
Sbjct: 290 ETFN-APYDAGFSIDDDYQGRSHSPVSCDEHARAA 323
>pdb|3GQU|A Chain A, Pyrococcus Horikoshii Nop5 Rna Binding Domain
pdb|3GQX|B Chain B, Pyrococcus Horikoshii Nop5 Rna Binding Domain From A
Twinned Crystal Form
pdb|3GQX|A Chain A, Pyrococcus Horikoshii Nop5 Rna Binding Domain From A
Twinned Crystal Form
Length = 169
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 139 NSPAWNKGRIHYAFAPEVVVKAYANQF-----AKDLERFLNNRAKEI 180
SP W +G+I A A ++ + A + F A++L++ L R KEI
Sbjct: 100 RSPWWQRGKIARALAGKLAIAARVDYFSGEYIAEELKKELEARIKEI 146
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 1 RLATNVTKDHIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAMQ--DLIEIVKH 58
R+ ++ + H HD ++ D L D +SN GPN N+++ ++I+ +K
Sbjct: 31 RMGASLLRLHFHDCFVQGCDASVLLDDTSNFTGEK----TAGPNA-NSIRGFEVIDTIKS 85
Query: 59 KYKSQCP 65
+ +S CP
Sbjct: 86 QVESLCP 92
>pdb|2AR3|A Chain A, E90a Mutant Structure Of Plyl
pdb|2AR3|B Chain B, E90a Mutant Structure Of Plyl
pdb|2AR3|C Chain C, E90a Mutant Structure Of Plyl
Length = 160
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 55 IVKHKYKSQCPNSQNPEF---HVSFNDQ-SSNDFNTLFTSLPQEIHFFVA 100
+V KY ++CP + P++ H ++ND + N+ N + T+ E+ F VA
Sbjct: 8 VVPSKYGTKCPYTMKPKYITVHNTYNDAPAENEVNYMITN-NNEVSFHVA 56
>pdb|1YB0|A Chain A, Structure Of Plyl
pdb|1YB0|B Chain B, Structure Of Plyl
pdb|1YB0|C Chain C, Structure Of Plyl
Length = 159
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 55 IVKHKYKSQCPNSQNPEF---HVSFNDQ-SSNDFNTLFTSLPQEIHFFVA 100
+V KY ++CP + P++ H ++ND + N+ N + T+ E+ F VA
Sbjct: 8 VVPSKYGTKCPYTMKPKYITVHNTYNDAPAENEVNYMITN-NNEVSFHVA 56
>pdb|3N9Y|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Y|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Z|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3N9Z|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3NA1|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
pdb|3NA1|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
Length = 487
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 112 PEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQF------ 165
PE+FL V+Y H + P G+L K S AW K R+ A EV+ F
Sbjct: 78 PERFLIPPWVAY--HQYYQRPIGVLLKKSAAWKKDRV--ALNQEVMAPEATKNFLPLLDA 133
Query: 166 -AKDLERFLNNRAKEIVPG 183
++D L+ R K+ G
Sbjct: 134 VSRDFVSVLHRRIKKAGSG 152
>pdb|3NA0|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
pdb|3NA0|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
Length = 471
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 112 PEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQF------ 165
PE+FL V+Y H + P G+L K S AW K R+ A EV+ F
Sbjct: 75 PERFLIPPWVAY--HQYYQRPIGVLLKKSAAWKKDRV--ALNQEVMAPEATKNFLPLLDA 130
Query: 166 -AKDLERFLNNRAKEIVPG 183
++D L+ R K+ G
Sbjct: 131 VSRDFVSVLHRRIKKAGSG 149
>pdb|4GA2|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 302 FRQLLERLEEINDKMVSCYRDGVQL 326
F LL LEE DK V CYR V+L
Sbjct: 70 FLGLLYELEENTDKAVECYRRSVEL 94
>pdb|4GA0|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 302 FRQLLERLEEINDKMVSCYRDGVQL 326
F LL LEE DK V CYR V+L
Sbjct: 70 FLGLLYELEENTDKAVECYRRSVEL 94
>pdb|4GA1|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 302 FRQLLERLEEINDKMVSCYRDGVQL 326
F LL LEE DK V CYR V+L
Sbjct: 70 FLGLLYELEENTDKAVECYRRSVEL 94
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 1 RLATNVTKDHIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAMQ-DLIEIVKHK 59
R+ ++ + H HD + D L D+S + I + GPN +A ++++ +K
Sbjct: 33 RIGASLIRLHFHDCFVLGCDASILLDNSGSIISEKN----AGPNANSARGFNVVDNIKTA 88
Query: 60 YKSQCP 65
++ CP
Sbjct: 89 LENACP 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,313,199
Number of Sequences: 62578
Number of extensions: 446487
Number of successful extensions: 1114
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1094
Number of HSP's gapped (non-prelim): 15
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)