Query 040129
Match_columns 333
No_of_seqs 136 out of 516
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:23:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040129.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040129hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03492 Methyltransf_7: SAM d 100.0 4.5E-99 1E-103 729.5 28.1 317 11-333 1-334 (334)
2 PLN02668 indole-3-acetate carb 100.0 2.3E-95 5E-100 709.2 33.8 324 1-331 38-384 (386)
3 PRK01683 trans-aconitate 2-met 99.1 4.4E-09 9.6E-14 97.8 18.4 223 29-332 30-256 (258)
4 PRK14103 trans-aconitate 2-met 99.1 1.7E-09 3.8E-14 100.7 15.7 203 29-314 28-233 (255)
5 COG4106 Tam Trans-aconitate me 98.7 1.1E-07 2.5E-12 86.3 11.6 210 29-332 29-255 (257)
6 PTZ00098 phosphoethanolamine N 98.6 4.8E-06 1E-10 78.3 19.3 150 30-261 52-202 (263)
7 TIGR02072 BioC biotin biosynth 98.6 8.1E-07 1.8E-11 80.5 12.7 188 29-309 33-222 (240)
8 TIGR00740 methyltransferase, p 98.6 2E-06 4.3E-11 79.3 15.3 161 31-255 54-221 (239)
9 TIGR02752 MenG_heptapren 2-hep 98.5 6.5E-07 1.4E-11 81.7 9.6 172 31-263 46-220 (231)
10 PRK11036 putative S-adenosyl-L 98.5 1.1E-06 2.3E-11 82.0 10.8 99 111-261 108-207 (255)
11 PRK15068 tRNA mo(5)U34 methylt 98.4 1.3E-06 2.8E-11 84.7 10.2 150 32-264 124-277 (322)
12 PRK15451 tRNA cmo(5)U34 methyl 98.4 6.9E-06 1.5E-10 76.4 14.5 95 115-255 125-224 (247)
13 PLN02336 phosphoethanolamine N 98.4 4.2E-06 9.2E-11 84.8 14.1 191 31-311 267-459 (475)
14 PF13489 Methyltransf_23: Meth 98.4 3.3E-06 7.1E-11 71.7 10.4 138 29-258 21-160 (161)
15 PRK10258 biotin biosynthesis p 98.4 1.9E-05 4.2E-10 73.1 16.3 165 30-288 42-208 (251)
16 PLN02244 tocopherol O-methyltr 98.3 0.00012 2.7E-09 71.3 21.2 98 110-261 181-278 (340)
17 PRK08317 hypothetical protein; 98.3 0.00012 2.7E-09 65.9 19.1 202 30-310 19-223 (241)
18 PRK11207 tellurite resistance 98.3 1.1E-05 2.5E-10 72.4 12.0 19 31-49 31-49 (197)
19 PLN02233 ubiquinone biosynthes 98.3 2.8E-05 6.2E-10 73.0 15.0 104 111-260 141-247 (261)
20 COG2226 UbiE Methylase involve 98.2 5.3E-06 1.2E-10 77.1 9.3 171 30-258 51-221 (238)
21 smart00828 PKS_MT Methyltransf 98.2 4.2E-05 9E-10 69.4 14.4 81 114-263 66-146 (224)
22 PRK11705 cyclopropane fatty ac 98.2 0.00022 4.9E-09 70.7 19.8 132 113-315 226-360 (383)
23 TIGR00452 methyltransferase, p 98.1 2E-05 4.3E-10 76.2 11.3 90 112-262 185-274 (314)
24 PRK00216 ubiE ubiquinone/menaq 98.1 2.2E-05 4.9E-10 71.1 10.7 168 31-262 52-226 (239)
25 PLN02396 hexaprenyldihydroxybe 98.1 0.00011 2.4E-09 71.4 15.5 94 111-260 194-288 (322)
26 PLN02490 MPBQ/MSBQ methyltrans 98.1 2.3E-05 5E-10 76.6 10.2 145 31-263 114-258 (340)
27 PF01209 Ubie_methyltran: ubiE 98.0 2.7E-06 5.9E-11 78.8 3.2 109 105-259 106-218 (233)
28 TIGR01934 MenG_MenH_UbiE ubiqu 98.0 0.00012 2.5E-09 65.7 12.5 166 30-262 39-211 (223)
29 PF12847 Methyltransf_18: Meth 98.0 3.7E-05 8.1E-10 61.6 8.3 93 32-189 3-110 (112)
30 PRK06202 hypothetical protein; 98.0 0.00013 2.8E-09 66.9 12.6 85 29-130 59-144 (232)
31 TIGR00477 tehB tellurite resis 97.9 6.7E-05 1.5E-09 67.3 10.2 19 31-49 31-49 (195)
32 PF08241 Methyltransf_11: Meth 97.9 2.2E-05 4.9E-10 60.3 6.0 49 102-188 47-95 (95)
33 PRK12335 tellurite resistance 97.8 7.5E-05 1.6E-09 71.0 8.6 123 33-260 123-258 (287)
34 PF03848 TehB: Tellurite resis 97.8 9.6E-05 2.1E-09 66.6 8.5 91 31-190 31-133 (192)
35 PF02353 CMAS: Mycolic acid cy 97.8 0.002 4.4E-08 61.1 17.5 160 30-290 62-235 (273)
36 TIGR02716 C20_methyl_CrtF C-20 97.7 0.00076 1.6E-08 64.5 13.8 150 30-256 149-301 (306)
37 PF13847 Methyltransf_31: Meth 97.7 0.00033 7.1E-09 59.9 10.2 95 30-192 3-112 (152)
38 TIGR02081 metW methionine bios 97.7 0.0002 4.3E-09 64.0 9.1 27 236-263 143-169 (194)
39 PRK07580 Mg-protoporphyrin IX 97.7 0.0014 3E-08 59.4 14.7 30 233-263 187-216 (230)
40 PRK11873 arsM arsenite S-adeno 97.7 0.00052 1.1E-08 64.4 11.8 91 110-262 141-231 (272)
41 TIGR02021 BchM-ChlM magnesium 97.7 0.0014 2.9E-08 59.5 13.9 30 233-263 179-208 (219)
42 PRK06922 hypothetical protein; 97.6 0.00017 3.7E-09 75.6 8.2 54 110-189 482-536 (677)
43 COG2230 Cfa Cyclopropane fatty 97.6 0.011 2.4E-07 56.3 19.0 181 29-315 71-268 (283)
44 PRK00121 trmB tRNA (guanine-N( 97.5 0.002 4.3E-08 58.2 12.6 72 109-225 105-176 (202)
45 PLN02336 phosphoethanolamine N 97.4 0.00052 1.1E-08 69.6 8.2 43 111-189 99-141 (475)
46 smart00138 MeTrc Methyltransfe 97.3 0.0015 3.2E-08 61.6 10.3 43 111-189 199-241 (264)
47 PF08242 Methyltransf_12: Meth 97.3 0.00046 9.9E-09 54.4 5.5 76 35-128 1-79 (99)
48 TIGR00138 gidB 16S rRNA methyl 97.3 0.00081 1.7E-08 59.9 7.4 19 31-49 43-61 (181)
49 PRK05785 hypothetical protein; 97.2 0.0022 4.9E-08 59.0 10.0 74 31-130 52-125 (226)
50 PRK05134 bifunctional 3-demeth 97.2 0.012 2.6E-07 53.6 14.4 94 112-260 111-204 (233)
51 KOG2361 Predicted methyltransf 97.2 0.0039 8.5E-08 57.9 10.9 181 7-261 53-237 (264)
52 KOG2940 Predicted methyltransf 97.2 0.00024 5.2E-09 65.5 2.9 136 31-256 73-222 (325)
53 KOG1270 Methyltransferases [Co 97.2 0.0021 4.6E-08 60.3 9.1 145 32-264 91-254 (282)
54 PF05401 NodS: Nodulation prot 97.2 0.0019 4.2E-08 58.4 8.5 93 29-190 42-146 (201)
55 PF13649 Methyltransf_25: Meth 97.2 0.0021 4.5E-08 51.0 7.8 18 34-51 1-18 (101)
56 TIGR01983 UbiG ubiquinone bios 97.1 0.0044 9.5E-08 56.0 10.2 93 113-260 110-202 (224)
57 TIGR03438 probable methyltrans 97.1 0.0028 6.1E-08 60.8 9.3 129 9-195 48-182 (301)
58 PRK11188 rrmJ 23S rRNA methylt 97.1 0.0037 8.1E-08 56.8 9.3 108 31-192 52-167 (209)
59 PLN02585 magnesium protoporphy 97.0 0.031 6.8E-07 54.2 16.1 27 236-263 275-301 (315)
60 KOG1540 Ubiquinone biosynthesi 97.0 0.0075 1.6E-07 56.6 10.8 169 29-258 99-278 (296)
61 COG2242 CobL Precorrin-6B meth 97.0 0.021 4.5E-07 51.2 13.0 46 31-80 35-94 (187)
62 cd02440 AdoMet_MTases S-adenos 96.8 0.0045 9.7E-08 46.8 6.8 100 33-189 1-103 (107)
63 PRK11088 rrmA 23S rRNA methylt 96.8 0.0042 9.2E-08 58.5 7.5 76 30-124 85-160 (272)
64 PLN02232 ubiquinone biosynthes 96.7 0.0021 4.5E-08 55.9 4.8 100 111-258 40-144 (160)
65 KOG3010 Methyltransferase [Gen 96.7 0.011 2.3E-07 55.0 9.4 44 113-195 98-141 (261)
66 COG4123 Predicted O-methyltran 96.7 0.0077 1.7E-07 56.4 8.4 114 29-190 43-170 (248)
67 TIGR00091 tRNA (guanine-N(7)-) 96.7 0.0096 2.1E-07 53.3 8.6 52 109-190 81-132 (194)
68 PRK13942 protein-L-isoaspartat 96.6 0.013 2.9E-07 53.2 9.6 35 8-49 61-95 (212)
69 PRK00107 gidB 16S rRNA methylt 96.6 0.017 3.7E-07 51.8 9.8 41 6-49 24-64 (187)
70 TIGR02469 CbiT precorrin-6Y C5 96.6 0.0081 1.8E-07 48.4 7.0 21 170-190 102-122 (124)
71 PRK00312 pcm protein-L-isoaspa 96.5 0.012 2.5E-07 53.2 8.5 19 30-48 78-96 (212)
72 PRK15001 SAM-dependent 23S rib 96.5 0.0073 1.6E-07 60.0 7.6 108 32-190 230-340 (378)
73 PRK09489 rsmC 16S ribosomal RN 96.5 0.0054 1.2E-07 60.1 6.6 105 33-190 199-303 (342)
74 PRK13944 protein-L-isoaspartat 96.5 0.013 2.9E-07 52.8 8.6 19 31-49 73-91 (205)
75 PRK13255 thiopurine S-methyltr 96.5 0.072 1.6E-06 48.9 13.3 19 32-50 39-57 (218)
76 PF07021 MetW: Methionine bios 96.5 0.016 3.4E-07 52.3 8.6 94 110-263 70-169 (193)
77 PRK08287 cobalt-precorrin-6Y C 96.5 0.026 5.5E-07 49.9 10.0 19 31-49 32-50 (187)
78 TIGR00537 hemK_rel_arch HemK-r 96.4 0.027 5.9E-07 49.4 9.7 25 169-193 119-143 (179)
79 PF08003 Methyltransf_9: Prote 96.3 0.019 4E-07 55.3 8.8 141 32-255 117-261 (315)
80 TIGR00080 pimt protein-L-isoas 96.3 0.027 5.9E-07 51.0 9.6 35 8-49 62-96 (215)
81 PF05175 MTS: Methyltransferas 96.3 0.032 6.9E-07 48.8 9.6 19 31-49 32-50 (170)
82 TIGR03533 L3_gln_methyl protei 96.3 0.04 8.7E-07 52.5 11.0 24 168-191 229-252 (284)
83 PRK04266 fibrillarin; Provisio 96.3 0.056 1.2E-06 49.9 11.5 20 31-50 73-92 (226)
84 TIGR03534 RF_mod_PrmC protein- 96.2 0.012 2.6E-07 53.9 6.4 125 31-190 88-217 (251)
85 PTZ00146 fibrillarin; Provisio 96.1 0.097 2.1E-06 50.3 12.3 39 8-50 114-152 (293)
86 PRK14967 putative methyltransf 96.1 0.09 2E-06 47.9 11.7 68 168-252 137-204 (223)
87 PF03141 Methyltransf_29: Puta 96.0 0.006 1.3E-07 62.0 3.8 21 110-130 176-197 (506)
88 PRK14121 tRNA (guanine-N(7)-)- 96.0 0.014 3.1E-07 58.0 6.4 98 32-190 124-235 (390)
89 PF00891 Methyltransf_2: O-met 96.0 0.037 8.1E-07 50.9 8.8 101 30-194 100-203 (241)
90 TIGR03587 Pse_Me-ase pseudamin 96.0 0.021 4.5E-07 51.8 6.8 77 30-129 43-119 (204)
91 COG2518 Pcm Protein-L-isoaspar 95.9 0.041 8.8E-07 50.3 8.5 49 116-191 122-170 (209)
92 PF05148 Methyltransf_8: Hypot 95.8 0.0095 2.1E-07 54.4 3.8 87 28-189 70-157 (219)
93 PF06080 DUF938: Protein of un 95.8 0.19 4.1E-06 45.8 12.1 170 5-260 8-191 (204)
94 TIGR03840 TMPT_Se_Te thiopurin 95.8 0.14 3E-06 46.8 11.4 18 32-49 36-53 (213)
95 PRK14968 putative methyltransf 95.7 0.25 5.5E-06 42.9 12.6 23 169-191 127-149 (188)
96 TIGR00438 rrmJ cell division p 95.7 0.017 3.7E-07 51.2 4.9 24 167-190 123-146 (188)
97 PRK11805 N5-glutamine S-adenos 95.6 0.15 3.2E-06 49.2 11.6 19 32-50 135-153 (307)
98 PF03291 Pox_MCEL: mRNA cappin 95.6 0.042 9.1E-07 53.7 7.9 109 30-191 62-187 (331)
99 KOG3045 Predicted RNA methylas 95.4 0.013 2.7E-07 55.2 3.2 24 167-190 241-264 (325)
100 PF13659 Methyltransf_26: Meth 95.3 0.091 2E-06 42.1 7.5 102 32-191 2-116 (117)
101 TIGR00406 prmA ribosomal prote 95.2 0.056 1.2E-06 51.5 6.9 17 32-48 161-177 (288)
102 TIGR00536 hemK_fam HemK family 95.0 0.11 2.4E-06 49.3 8.6 24 168-191 222-245 (284)
103 PRK00811 spermidine synthase; 94.9 0.15 3.3E-06 48.5 9.1 21 29-49 75-95 (283)
104 KOG1541 Predicted protein carb 94.8 0.14 3.1E-06 47.3 8.2 56 110-192 107-162 (270)
105 PRK09328 N5-glutamine S-adenos 94.7 0.19 4.1E-06 46.8 9.2 24 167-190 215-238 (275)
106 TIGR01177 conserved hypothetic 94.1 0.69 1.5E-05 44.8 11.8 24 170-193 274-297 (329)
107 PRK00517 prmA ribosomal protei 93.9 0.062 1.4E-06 50.0 3.8 18 31-48 120-137 (250)
108 PRK14903 16S rRNA methyltransf 93.7 0.37 8.1E-06 48.7 9.4 114 32-194 239-370 (431)
109 PRK10901 16S rRNA methyltransf 93.6 0.7 1.5E-05 46.5 11.1 25 167-191 349-373 (427)
110 PRK01544 bifunctional N5-gluta 93.5 0.16 3.5E-06 52.3 6.5 20 31-50 139-158 (506)
111 PF01135 PCMT: Protein-L-isoas 93.1 0.36 7.7E-06 44.1 7.5 36 7-49 56-91 (209)
112 PRK14966 unknown domain/N5-glu 93.1 0.61 1.3E-05 47.1 9.7 18 32-49 253-270 (423)
113 PHA03411 putative methyltransf 93.1 0.4 8.6E-06 45.7 7.9 120 32-194 66-187 (279)
114 PRK00377 cbiT cobalt-precorrin 93.0 2.8 6.1E-05 37.3 13.1 20 30-49 40-59 (198)
115 TIGR00563 rsmB ribosomal RNA s 92.6 0.99 2.1E-05 45.4 10.4 127 31-193 239-371 (426)
116 PLN03075 nicotianamine synthas 92.4 0.61 1.3E-05 44.9 8.3 20 30-49 123-142 (296)
117 COG2264 PrmA Ribosomal protein 92.4 0.13 2.9E-06 49.4 3.7 33 8-49 149-181 (300)
118 PRK14904 16S rRNA methyltransf 91.9 2.1 4.5E-05 43.4 11.9 27 167-193 354-380 (445)
119 PRK13943 protein-L-isoaspartat 91.4 0.96 2.1E-05 44.1 8.5 36 8-50 65-100 (322)
120 PRK14902 16S rRNA methyltransf 91.3 1.3 2.8E-05 44.8 9.7 19 32-50 252-270 (444)
121 PF08123 DOT1: Histone methyla 90.4 1.5 3.3E-05 39.9 8.3 55 31-87 43-118 (205)
122 TIGR00417 speE spermidine synt 90.2 2.7 5.9E-05 39.5 10.2 21 29-49 71-91 (270)
123 KOG4300 Predicted methyltransf 89.7 2.3 5E-05 39.2 8.7 110 97-267 129-239 (252)
124 TIGR00446 nop2p NOL1/NOP2/sun 89.5 2.5 5.3E-05 39.7 9.3 26 167-192 176-201 (264)
125 PLN02366 spermidine synthase 88.9 2.8 6.2E-05 40.5 9.4 21 29-49 90-110 (308)
126 PRK14901 16S rRNA methyltransf 88.9 3.6 7.8E-05 41.5 10.5 25 167-191 361-385 (434)
127 KOG1975 mRNA cap methyltransfe 88.7 1.2 2.6E-05 43.5 6.4 57 102-192 178-239 (389)
128 COG2813 RsmC 16S RNA G1207 met 88.4 2 4.3E-05 41.4 7.8 18 33-50 161-178 (300)
129 COG2227 UbiG 2-polyprenyl-3-me 88.3 2.1 4.6E-05 40.0 7.7 70 172-260 143-214 (243)
130 PF02390 Methyltransf_4: Putat 88.2 0.66 1.4E-05 41.7 4.2 111 33-190 20-133 (195)
131 PRK04457 spermidine synthase; 88.0 8 0.00017 36.3 11.6 21 29-49 65-85 (262)
132 PF05891 Methyltransf_PK: AdoM 87.6 1.3 2.7E-05 40.9 5.7 135 29-263 54-203 (218)
133 KOG2904 Predicted methyltransf 86.8 1.8 3.8E-05 41.5 6.3 127 32-196 150-291 (328)
134 PRK03612 spermidine synthase; 86.2 4.5 9.9E-05 41.9 9.6 21 29-49 296-316 (521)
135 KOG2899 Predicted methyltransf 85.8 2.2 4.8E-05 40.1 6.3 24 167-190 186-209 (288)
136 PRK01544 bifunctional N5-gluta 85.4 1.8 3.9E-05 44.7 6.2 115 29-190 346-462 (506)
137 PHA03412 putative methyltransf 84.1 0.6 1.3E-05 43.6 1.8 63 31-99 50-126 (241)
138 PF01234 NNMT_PNMT_TEMT: NNMT/ 82.5 2.2 4.8E-05 40.2 5.0 82 115-261 158-239 (256)
139 KOG3178 Hydroxyindole-O-methyl 82.0 18 0.00038 35.6 11.0 152 30-261 177-330 (342)
140 KOG1499 Protein arginine N-met 81.9 3.8 8.2E-05 40.3 6.4 93 30-187 60-164 (346)
141 PRK07402 precorrin-6B methylas 81.1 4.8 0.0001 35.6 6.5 19 31-49 41-59 (196)
142 smart00650 rADc Ribosomal RNA 80.3 2.8 6E-05 36.3 4.5 20 32-51 15-34 (169)
143 PRK00274 ksgA 16S ribosomal RN 79.8 3.7 8E-05 38.7 5.5 49 31-86 43-103 (272)
144 TIGR03439 methyl_EasF probable 79.1 19 0.00041 35.1 10.2 39 9-53 61-99 (319)
145 COG2263 Predicted RNA methylas 77.3 4 8.6E-05 37.0 4.6 51 30-87 45-108 (198)
146 COG0220 Predicted S-adenosylme 76.9 63 0.0014 29.9 12.9 53 108-190 112-164 (227)
147 PRK11783 rlmL 23S rRNA m(2)G24 76.8 19 0.00042 38.7 10.5 18 32-49 540-557 (702)
148 PRK15128 23S rRNA m(5)C1962 me 76.2 36 0.00079 34.1 11.6 26 165-190 314-339 (396)
149 PRK14896 ksgA 16S ribosomal RN 73.6 7.9 0.00017 36.1 5.9 20 31-50 30-49 (258)
150 PRK01581 speE spermidine synth 72.7 21 0.00044 35.6 8.7 21 29-49 149-169 (374)
151 KOG1271 Methyltransferases [Ge 70.2 52 0.0011 30.0 9.8 39 4-49 48-86 (227)
152 PRK11727 23S rRNA mA1618 methy 69.8 12 0.00027 36.4 6.4 22 239-260 271-292 (321)
153 TIGR00755 ksgA dimethyladenosi 69.2 15 0.00032 34.1 6.6 20 31-50 30-49 (253)
154 PF10294 Methyltransf_16: Puta 68.4 28 0.00061 30.4 7.9 36 29-81 44-79 (173)
155 COG1352 CheR Methylase of chem 66.8 54 0.0012 31.2 9.9 69 30-106 96-176 (268)
156 KOG1331 Predicted methyltransf 65.9 5.5 0.00012 38.2 3.0 54 110-198 98-151 (293)
157 TIGR00478 tly hemolysin TlyA f 65.6 6.2 0.00014 36.5 3.3 22 30-51 75-96 (228)
158 PRK10909 rsmD 16S rRNA m(2)G96 65.6 19 0.00041 32.5 6.3 18 32-49 55-72 (199)
159 PF06859 Bin3: Bicoid-interact 64.5 2.8 6E-05 34.5 0.6 24 167-190 21-44 (110)
160 PF06325 PrmA: Ribosomal prote 63.3 7.2 0.00016 37.6 3.3 34 7-49 147-180 (295)
161 PTZ00338 dimethyladenosine tra 60.3 21 0.00047 34.2 6.0 51 31-84 37-99 (294)
162 PF13679 Methyltransf_32: Meth 59.6 12 0.00025 31.5 3.6 23 28-50 23-45 (141)
163 PRK03522 rumB 23S rRNA methylu 59.3 30 0.00065 33.2 6.9 20 31-50 174-193 (315)
164 TIGR03704 PrmC_rel_meth putati 58.8 9.7 0.00021 35.5 3.3 20 31-50 87-106 (251)
165 COG5124 Protein predicted to b 58.0 6.8 0.00015 34.9 1.9 37 205-241 39-75 (209)
166 PF05185 PRMT5: PRMT5 arginine 57.6 8.1 0.00018 39.4 2.7 22 30-51 186-207 (448)
167 PRK13168 rumA 23S rRNA m(5)U19 57.3 29 0.00064 35.0 6.7 18 32-49 299-316 (443)
168 PF01728 FtsJ: FtsJ-like methy 57.1 11 0.00023 32.8 3.1 38 29-82 22-59 (181)
169 PF03962 Mnd1: Mnd1 family; I 53.4 7.6 0.00017 34.9 1.5 34 208-241 29-62 (188)
170 PLN02823 spermine synthase 53.4 1E+02 0.0022 30.2 9.5 21 29-49 102-122 (336)
171 cd08788 CARD_NOD2_2_CARD15 Cas 53.2 17 0.00037 28.2 3.2 43 206-249 11-53 (81)
172 COG0030 KsgA Dimethyladenosine 53.1 24 0.00052 33.4 4.9 52 31-88 31-94 (259)
173 PRK04148 hypothetical protein; 52.3 45 0.00098 28.4 6.0 47 30-87 16-75 (134)
174 PF02384 N6_Mtase: N-6 DNA Met 50.9 1.1E+02 0.0023 29.0 9.1 144 9-191 32-184 (311)
175 COG2890 HemK Methylase of poly 49.8 15 0.00032 35.0 3.0 18 33-50 113-130 (280)
176 TIGR00479 rumA 23S rRNA (uraci 49.4 48 0.001 33.2 6.7 19 31-49 293-311 (431)
177 PRK11760 putative 23S rRNA C24 48.3 20 0.00043 35.4 3.6 46 5-50 186-231 (357)
178 TIGR00095 RNA methyltransferas 47.3 23 0.00051 31.5 3.7 37 8-50 33-69 (189)
179 PF12147 Methyltransf_20: Puta 47.1 42 0.00092 32.5 5.5 59 173-255 232-292 (311)
180 TIGR02085 meth_trns_rumB 23S r 45.9 23 0.0005 35.0 3.8 19 32-50 235-253 (374)
181 TIGR01444 fkbM_fam methyltrans 45.4 33 0.00071 28.1 4.1 17 33-49 1-17 (143)
182 KOG3433 Protein involved in me 41.8 17 0.00036 32.7 1.8 37 205-241 38-74 (203)
183 PRK11524 putative methyltransf 41.7 38 0.00083 32.0 4.4 22 169-190 59-80 (284)
184 PF14904 FAM86: Family of unkn 41.6 23 0.00049 28.7 2.4 31 278-308 67-99 (100)
185 PRK10611 chemotaxis methyltran 41.1 26 0.00057 33.6 3.2 43 30-81 115-157 (287)
186 COG4976 Predicted methyltransf 40.7 13 0.00029 34.8 1.1 65 167-262 202-266 (287)
187 PF09851 SHOCT: Short C-termin 40.4 27 0.00058 21.9 2.1 18 213-230 6-23 (31)
188 KOG3191 Predicted N6-DNA-methy 40.3 39 0.00085 30.6 3.9 23 31-53 44-66 (209)
189 PF07757 AdoMet_MTase: Predict 39.1 15 0.00032 30.3 1.0 19 29-47 57-75 (112)
190 PF07091 FmrO: Ribosomal RNA m 38.2 48 0.001 31.3 4.3 49 29-82 104-166 (251)
191 PF02375 JmjN: jmjN domain; I 38.1 13 0.00028 24.1 0.4 15 235-249 1-15 (34)
192 PF02268 TFIIA_gamma_N: Transc 37.1 45 0.00098 23.4 3.0 22 207-228 11-32 (49)
193 PF00398 RrnaAD: Ribosomal RNA 36.4 2.2E+02 0.0047 26.5 8.6 52 30-87 30-93 (262)
194 TIGR00730 conserved hypothetic 34.5 60 0.0013 28.8 4.2 41 207-250 137-177 (178)
195 PRK11933 yebU rRNA (cytosine-C 33.7 2E+02 0.0043 29.6 8.4 20 31-50 114-133 (470)
196 PF09597 IGR: IGR protein moti 33.4 41 0.00088 24.4 2.4 27 159-185 13-39 (57)
197 COG1189 Predicted rRNA methyla 32.9 42 0.0009 31.5 3.0 34 10-50 66-99 (245)
198 PHA00457 inhibitor of host bac 32.3 43 0.00094 24.5 2.3 30 230-260 25-58 (63)
199 KOG1661 Protein-L-isoaspartate 31.7 39 0.00084 31.3 2.5 30 147-191 165-194 (237)
200 KOG3115 Methyltransferase-like 31.6 24 0.00051 32.6 1.1 19 30-48 60-78 (249)
201 PF09445 Methyltransf_15: RNA 28.0 33 0.00072 30.1 1.4 19 33-51 2-20 (163)
202 TIGR02143 trmA_only tRNA (urac 28.0 1.7E+02 0.0036 28.8 6.5 43 33-79 200-254 (353)
203 smart00400 ZnF_CHCC zinc finge 27.3 52 0.0011 23.1 2.1 20 33-52 23-42 (55)
204 COG2821 MltA Membrane-bound ly 26.9 55 0.0012 32.6 2.8 63 180-255 201-264 (373)
205 PF05724 TPMT: Thiopurine S-me 26.6 4.9E+02 0.011 23.6 14.1 27 235-263 166-192 (218)
206 PF07942 N2227: N2227-like pro 26.5 1.4E+02 0.0031 28.4 5.5 38 9-49 38-75 (270)
207 PHA02734 coat protein; Provisi 25.7 49 0.0011 27.8 1.9 41 43-83 49-90 (149)
208 PF03641 Lysine_decarbox: Poss 25.6 94 0.002 25.9 3.7 39 207-248 95-133 (133)
209 KOG3420 Predicted RNA methylas 25.6 45 0.00098 29.3 1.8 19 29-47 47-65 (185)
210 PRK05031 tRNA (uracil-5-)-meth 25.5 1.1E+02 0.0023 30.1 4.7 44 32-79 208-263 (362)
211 PRK02289 4-oxalocrotonate taut 25.4 94 0.002 22.1 3.2 41 42-84 11-51 (60)
212 PF13260 DUF4051: Protein of u 24.9 96 0.0021 21.8 2.9 28 157-184 21-48 (54)
213 KOG4068 Uncharacterized conser 24.7 82 0.0018 27.7 3.2 45 208-252 68-116 (174)
214 smart00545 JmjN Small domain f 24.6 45 0.00097 22.6 1.3 16 234-249 2-17 (42)
215 TIGR02987 met_A_Alw26 type II 24.2 94 0.002 32.1 4.2 23 30-52 31-53 (524)
216 KOG4589 Cell division protein 23.6 57 0.0012 29.8 2.1 22 29-50 68-89 (232)
217 PRK13256 thiopurine S-methyltr 23.6 4.2E+02 0.0091 24.4 7.9 36 7-50 28-63 (226)
218 PF04816 DUF633: Family of unk 23.0 1.5E+02 0.0032 26.9 4.8 23 239-262 103-125 (205)
219 PF01739 CheR: CheR methyltran 22.8 82 0.0018 28.4 3.0 45 29-81 30-74 (196)
220 KOG0451 Predicted 2-oxoglutara 22.6 1.6E+02 0.0035 31.2 5.3 72 147-232 389-475 (913)
221 PF14044 NETI: NETI protein 22.0 64 0.0014 23.4 1.7 27 209-238 8-34 (57)
222 PLN02672 methionine S-methyltr 20.9 45 0.00098 37.8 1.1 24 170-193 258-281 (1082)
223 PF04672 Methyltransf_19: S-ad 20.6 2.3E+02 0.0049 27.0 5.6 54 178-256 178-231 (267)
224 PF01739 CheR: CheR methyltran 20.6 1.1E+02 0.0023 27.6 3.3 18 173-190 158-175 (196)
225 PF10357 Kin17_mid: Domain of 20.6 76 0.0017 26.8 2.2 26 154-179 10-35 (127)
226 COG2519 GCD14 tRNA(1-methylade 20.2 2.1E+02 0.0046 27.1 5.2 47 173-234 178-224 (256)
227 PRK00745 4-oxalocrotonate taut 20.1 1.2E+02 0.0026 21.3 2.9 45 39-85 8-52 (62)
No 1
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=100.00 E-value=4.5e-99 Score=729.51 Aligned_cols=317 Identities=41% Similarity=0.693 Sum_probs=266.9
Q ss_pred HHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhc
Q 040129 11 IHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTS 90 (333)
Q Consensus 11 l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~ 90 (333)
|++||.+++.... .+++++|||||||+|+||+.+|+.||++|+++|++.+ .+++|||||||||||+||||+||++
T Consensus 1 ~~~ai~~~~~~~~----~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~-~~~~~e~~v~~nDlP~NDFn~lF~~ 75 (334)
T PF03492_consen 1 LEEAIKELYNSSN----NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSN-NQPPPEFQVFFNDLPSNDFNTLFKS 75 (334)
T ss_dssp -HHHHHHHHHSTT----TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT--SS--EEEEEEEE-TTS-HHHHHHC
T ss_pred ChHHHHHHHhcCC----CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhc-CCCCCeEEEEeCCCCCccHHHHHHh
Confidence 6899999986542 6889999999999999999999999999999998754 3578999999999999999999999
Q ss_pred CCcc-------ccceeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCC-CHHHHHHHH
Q 040129 91 LPQE-------IHFFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFA-PEVVVKAYA 162 (333)
Q Consensus 91 l~~~-------~~~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~-~~~v~~ay~ 162 (333)
||++ ++||++|||||||+||||++||||+||++||||||++|+++.++.+|+||||+||++++ +++|.+||+
T Consensus 76 l~~~~~~~~~~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~ 155 (334)
T PF03492_consen 76 LPSFQQSLKKFRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYA 155 (334)
T ss_dssp HHHHHHHHHHTTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHH
T ss_pred ChhhhhccCCCceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHH
Confidence 9987 58999999999999999999999999999999999999999999999999999999955 999999999
Q ss_pred HHHHHhHHHHHHhhhhhhccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHH
Q 040129 163 NQFAKDLERFLNNRAKEIVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPG 242 (333)
Q Consensus 163 ~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~ 242 (333)
+||++||.+||++||+||+|||+||++++||++.++... +.+.+|++|+++|+|||.||+|++|++|+||+|+|+||.+
T Consensus 156 ~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~-~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~e 234 (334)
T PF03492_consen 156 KQFQKDFSSFLKARAEELVPGGRMVLTFLGRDEEDPSST-GSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPE 234 (334)
T ss_dssp HHHHHHHHHHHHHHHHHEEEEEEEEEEEEE-STSSTTST-TCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HH
T ss_pred HHHHHHHHHHHHHhhheeccCcEEEEEEeeccccccccC-CcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHH
Confidence 999999999999999999999999999999999766554 4667999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcEEEeEEEEeC-CC---CCC-----cCCCChhHHHHHHHHHhhhhhhhhcChHHHHHHHHHHHHHHHHhh
Q 040129 243 EFGAVVERNGNFRIEVMGLTN-PS---PWL-----KGRINMPEYIKHVRAATESMFNKHFSYEVTEEMFRQLLERLEEIN 313 (333)
Q Consensus 243 E~~~~ie~~G~F~I~~le~~~-p~---~~~-----~~~~~~~~~a~~iRa~~e~~l~~hfgeei~delf~r~~~~l~~~~ 313 (333)
|++++|+++|+|+|+++|+++ +. ++. +...+|+.+++++||++||+|++|||++|+|+||+||++++++++
T Consensus 235 Ev~~~I~~~gsF~I~~le~~~~~~~~~~~~~~~~~d~~~~~~~~~~~iRA~~e~~l~~hfG~ei~D~LF~r~~~~v~~~~ 314 (334)
T PF03492_consen 235 EVRAIIEEEGSFEIEKLELFEQPWWSVPDDESWKEDAKEYARNVANYIRAVFEPLLKAHFGEEIMDELFERYAKKVAEHL 314 (334)
T ss_dssp HHHHHHHHHTSEEEEEEEEEEEETCCTCTTT-STTTHHCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEEEEEEeecccccchhhhcccchhhhHHHHHHhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987 22 111 112588999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCcEEEEEEEeeC
Q 040129 314 DKMVSCYRDGVQLFAVLQRL 333 (333)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~r~ 333 (333)
+.......++++++++|+||
T Consensus 315 ~~~~~~~~~~~~i~~~L~Rk 334 (334)
T PF03492_consen 315 EKEKSRNMKFVNIVVSLTRK 334 (334)
T ss_dssp HHTHTT-BEEEEEEEEEEE-
T ss_pred HHhhccCCCcEEEEEEEeeC
Confidence 88443458899999999997
No 2
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=100.00 E-value=2.3e-95 Score=709.18 Aligned_cols=324 Identities=30% Similarity=0.498 Sum_probs=291.1
Q ss_pred ChhhhhhhHHHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCC
Q 040129 1 RLATNVTKDHIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQS 80 (333)
Q Consensus 1 ~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP 80 (333)
|+++..++|+|++||++++... . ..++++|||||||+|+||+.++++||++|+++|++.+ +++|||||||||||
T Consensus 38 ~~~~~~~k~~leeai~~~~~~~-~---p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~--~~~pe~qv~~nDLP 111 (386)
T PLN02668 38 ALHARSMLHLLEETLDNVHLNS-S---PEVPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAG--LDPPEFSAFFSDLP 111 (386)
T ss_pred HHHHHHHHHHHHHHHHHhcccc-C---CCcceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcC--CCCCcceEEecCCC
Confidence 4678899999999999875321 1 1368999999999999999999999999999998743 46889999999999
Q ss_pred CCchHHHhhcCCccc----------------cceeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCC
Q 040129 81 SNDFNTLFTSLPQEI----------------HFFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWN 144 (333)
Q Consensus 81 ~NDFn~lF~~l~~~~----------------~~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~n 144 (333)
+||||+||++||+++ +||++|||||||+||||++||||+||++|||||||+|+++.|+.++.||
T Consensus 112 ~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~N 191 (386)
T PLN02668 112 SNDFNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYN 191 (386)
T ss_pred CCCHHHHHhhchhhhhhhcchhhhccccCCCceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCccccc
Confidence 999999999998632 4999999999999999999999999999999999999999999999999
Q ss_pred CCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEecCCCCCCCCccchhhHHHHH-HHHHHHHHHhccC
Q 040129 145 KGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITNPSIPDGMPFSEIANGLMYNC-MGTILYDMVKVGL 223 (333)
Q Consensus 145 kg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~-l~~~l~~mv~eG~ 223 (333)
||+||+++++++|.+||++||++||..||++||+||+|||+||++++||++.++..+...+.+|+. +.++|+|||.||+
T Consensus 192 kg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGl 271 (386)
T PLN02668 192 KGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGL 271 (386)
T ss_pred CCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999998777666346777887 9999999999999
Q ss_pred CCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeCC----CCCC--cCCCChhHHHHHHHHHhhhhhhhhcChHH
Q 040129 224 LSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTNP----SPWL--KGRINMPEYIKHVRAATESMFNKHFSYEV 297 (333)
Q Consensus 224 i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p----~~~~--~~~~~~~~~a~~iRa~~e~~l~~hfgeei 297 (333)
|++||+|+||+|+|+||.+|++++|+++|+|+|+++|+++. ..+. +....++.+++++||++||+|++|||++|
T Consensus 272 I~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~I~~le~~~~~~~~~~~~~~d~~~~g~~~a~~~RA~~E~ll~~HFG~~i 351 (386)
T PLN02668 272 VTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFKGGSPLVVNEPDDAAEVGRAMANSCRSVAGVLVDAHIGEEL 351 (386)
T ss_pred CCHHHHhcccCcccCCCHHHHHHHHhhcCCEEeeeeEEeeccCcccccCcccHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 99999999999999999999999999999999999999872 1111 11235678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcCCCcEEEEEEEe
Q 040129 298 TEEMFRQLLERLEEINDKMVSCYRDGVQLFAVLQ 331 (333)
Q Consensus 298 ~delf~r~~~~l~~~~~~~~~~~~~~~~~~~~l~ 331 (333)
+|+||+||++++++++.... ++.++.+++++|.
T Consensus 352 ~D~lF~r~~~~v~~~~~~~~-~~~~~~~~~~sL~ 384 (386)
T PLN02668 352 SNELFLRVERRATSHAKELL-EKLQFFHIVASLS 384 (386)
T ss_pred HHHHHHHHHHHHHHHHHhhc-ccCceEEEEEEEe
Confidence 99999999999999888842 6677888888875
No 3
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.13 E-value=4.4e-09 Score=97.81 Aligned_cols=223 Identities=17% Similarity=0.239 Sum_probs=126.6
Q ss_pred CCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhh-cCCccccceeeccCcccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFT-SLPQEIHFFVAGVPGSFH 107 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~-~l~~~~~~f~~~vpgSFy 107 (333)
.+.-+|+|+||++|..+..+.+. .|.-+|+-.|.... .-...+ .++. --|. .+.+-
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~-----------------~~~~~v~gvD~s~~-~i~~a~~~~~~--~~~~---~~d~~ 86 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVER-----------------WPAARITGIDSSPA-MLAEARSRLPD--CQFV---EADIA 86 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHH-----------------CCCCEEEEEECCHH-HHHHHHHhCCC--CeEE---ECchh
Confidence 33579999999999888655431 12345666665432 111111 1111 0121 12222
Q ss_pred cccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEE
Q 040129 108 KRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMII 187 (333)
Q Consensus 108 ~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mv 187 (333)
.+.|++++|+++|+.++||+... ..+|+.-.+-|+|||.++
T Consensus 87 -~~~~~~~fD~v~~~~~l~~~~d~--------------------------------------~~~l~~~~~~LkpgG~~~ 127 (258)
T PRK01683 87 -SWQPPQALDLIFANASLQWLPDH--------------------------------------LELFPRLVSLLAPGGVLA 127 (258)
T ss_pred -ccCCCCCccEEEEccChhhCCCH--------------------------------------HHHHHHHHHhcCCCcEEE
Confidence 34577899999999999996321 123444457899999999
Q ss_pred EEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeCCCCC
Q 040129 188 ITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTNPSPW 267 (333)
Q Consensus 188 l~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p~~~ 267 (333)
+.+.+.... ..+.. ++++.......+.-...-..+.+.|+.+++...+++.| +.++..+...+.+.
T Consensus 128 ~~~~~~~~~---------~~~~~----~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~v~~~~~~~~~~~ 193 (258)
T PRK01683 128 VQMPDNLDE---------PSHVL----MREVAENGPWEQNLPDRGARRAPLPPPHAYYDALAPAA-CRVDIWHTTYYHPM 193 (258)
T ss_pred EECCCCCCC---------HHHHH----HHHHHccCchHHHhccccccCcCCCCHHHHHHHHHhCC-Cceeeeeeeeeeec
Confidence 986442111 11111 12222111111000011123457789999999999999 66655554322222
Q ss_pred CcCCCChhHHHHHHHHH-hhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhhc--CCCcEEEEEEEee
Q 040129 268 LKGRINMPEYIKHVRAA-TESMFNKHFSYEVTEEMFRQLLERLEEINDKMVSC--YRDGVQLFAVLQR 332 (333)
Q Consensus 268 ~~~~~~~~~~a~~iRa~-~e~~l~~hfgeei~delf~r~~~~l~~~~~~~~~~--~~~~~~~~~~l~r 332 (333)
. ..+.+.+|+++. +.+++. +++++..+++.++|.+.+.+....-..+ ...+.-++++-+|
T Consensus 194 ~----~~~~~~~~~~~~~~~~~~~-~l~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 256 (258)
T PRK01683 194 P----SAQAIVEWVKGTGLRPFLD-PLTESEQAAFLAAYLARIAEAYPLQADGKVLLAFPRLFIVARR 256 (258)
T ss_pred C----CchhhhhhhhhccHHHHHh-hCCHHHHHHHHHHHHHHHHHHCCCCCCCcEEcccceEEEEEEe
Confidence 1 125677898864 467764 7999999999999999998885421001 1334445565555
No 4
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.13 E-value=1.7e-09 Score=100.70 Aligned_cols=203 Identities=16% Similarity=0.250 Sum_probs=120.9
Q ss_pred CCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCccccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHK 108 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~ 108 (333)
...-+|.|+||++|..+..+.. ++ |..+|+-.|+- -+.-...+. +. +..+-+.+ .
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~--------~~---------p~~~v~gvD~s-~~~~~~a~~----~~--~~~~~~d~-~ 82 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLAR--------RW---------PGAVIEALDSS-PEMVAAARE----RG--VDARTGDV-R 82 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHH--------HC---------CCCEEEEEECC-HHHHHHHHh----cC--CcEEEcCh-h
Confidence 3457999999999977654332 11 23456666652 122222221 11 11122343 3
Q ss_pred ccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEE
Q 040129 109 RLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIII 188 (333)
Q Consensus 109 rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl 188 (333)
.+.|.+++|+++|+.++||+...+ .+|+.=++-|+|||++++
T Consensus 83 ~~~~~~~fD~v~~~~~l~~~~d~~--------------------------------------~~l~~~~~~LkpgG~l~~ 124 (255)
T PRK14103 83 DWKPKPDTDVVVSNAALQWVPEHA--------------------------------------DLLVRWVDELAPGSWIAV 124 (255)
T ss_pred hCCCCCCceEEEEehhhhhCCCHH--------------------------------------HHHHHHHHhCCCCcEEEE
Confidence 556788999999999999964311 112333477999999999
Q ss_pred EecCCCCCCCCccchhhHHHHHHH--HHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeCCCC
Q 040129 189 TNPSIPDGMPFSEIANGLMYNCMG--TILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTNPSP 266 (333)
Q Consensus 189 ~~~gr~~~~~~~~~~~~~~~~~l~--~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p~~ 266 (333)
.+.+..+ .+ .......+. ..|..... + ..+..+..+.+.+++...+++.| |+++..+......
T Consensus 125 ~~~~~~~-~~-----~~~~~~~~~~~~~w~~~~~-~-------~~~~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~~~~~ 189 (255)
T PRK14103 125 QVPGNFD-AP-----SHAAVRALARREPWAKLLR-D-------IPFRVGAVVQTPAGYAELLTDAG-CKVDAWETTYVHQ 189 (255)
T ss_pred EcCCCcC-Ch-----hHHHHHHHhccCchhHHhc-c-------cccccCcCCCCHHHHHHHHHhCC-CeEEEEeeeeeee
Confidence 8766321 11 001111111 11222110 0 01234556789999999999999 9877666432221
Q ss_pred CCcCCCChhHHHHHHHHH-hhhhhhhhcChHHHHHHHHHHHHHHHHhhh
Q 040129 267 WLKGRINMPEYIKHVRAA-TESMFNKHFSYEVTEEMFRQLLERLEEIND 314 (333)
Q Consensus 267 ~~~~~~~~~~~a~~iRa~-~e~~l~~hfgeei~delf~r~~~~l~~~~~ 314 (333)
.. ..+.+..|+++. +.+++. .++++.++++-+.+.+.+++...
T Consensus 190 ~~----~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~l~~~~~ 233 (255)
T PRK14103 190 LT----GEDPVLDWITGTALRPVRE-RLSDDSWEQFRAELIPLLREAYP 233 (255)
T ss_pred CC----Cchhhhhhhhccchhhhhh-hCCHHHHHHHHHHHHHHHHHHCC
Confidence 11 125688888865 467777 69999999999999999988754
No 5
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.74 E-value=1.1e-07 Score=86.27 Aligned_cols=210 Identities=17% Similarity=0.236 Sum_probs=128.3
Q ss_pred CCcEEEEeecCCCCcccHHHHH-----------HHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQ-----------DLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHF 97 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~-----------~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~ 97 (333)
..+-+|.||||+.|.-|-++.+ ..-++|.+.-.. .|..++.-.|+
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r------lp~~~f~~aDl------------------ 84 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR------LPDATFEEADL------------------ 84 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh------CCCCceecccH------------------
Confidence 4578999999999988877662 222333333111 34444333443
Q ss_pred eeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhh
Q 040129 98 FVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRA 177 (333)
Q Consensus 98 f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra 177 (333)
...-|+...|++||+.+||||...|..+. .=-
T Consensus 85 ----------~~w~p~~~~dllfaNAvlqWlpdH~~ll~--------------------------------------rL~ 116 (257)
T COG4106 85 ----------RTWKPEQPTDLLFANAVLQWLPDHPELLP--------------------------------------RLV 116 (257)
T ss_pred ----------hhcCCCCccchhhhhhhhhhccccHHHHH--------------------------------------HHH
Confidence 23468888999999999999665553322 111
Q ss_pred hhhccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCc-CcccCCHHHHHHHHHhCCcEEE
Q 040129 178 KEIVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNL-PIYACPPGEFGAVVERNGNFRI 256 (333)
Q Consensus 178 ~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~-P~y~ps~~E~~~~ie~~G~F~I 256 (333)
.+|.|||.+-+.|++--++- -+.++. +.++++-- +.++..... ----+|+.-|-+++...+ -+|
T Consensus 117 ~~L~Pgg~LAVQmPdN~dep---------sH~~mr----~~A~~~p~-~~~l~~~~~~r~~v~s~a~Yy~lLa~~~-~rv 181 (257)
T COG4106 117 SQLAPGGVLAVQMPDNLDEP---------SHRLMR----ETADEAPF-AQELGGRGLTRAPLPSPAAYYELLAPLA-CRV 181 (257)
T ss_pred HhhCCCceEEEECCCccCch---------hHHHHH----HHHhcCch-hhhhCccccccCCCCCHHHHHHHhCccc-cee
Confidence 78999999999998743321 123333 33333311 122222111 112357888888888777 466
Q ss_pred eEEEEeCCCCCCcCCCChhHHHHHHHH-HhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhhcCCC----cEEEEEEEe
Q 040129 257 EVMGLTNPSPWLKGRINMPEYIKHVRA-ATESMFNKHFSYEVTEEMFRQLLERLEEINDKMVSCYRD----GVQLFAVLQ 331 (333)
Q Consensus 257 ~~le~~~p~~~~~~~~~~~~~a~~iRa-~~e~~l~~hfgeei~delf~r~~~~l~~~~~~~~~~~~~----~~~~~~~l~ 331 (333)
+--++.-.+... .++.+..|+++ ...|.+.. ++++-...+.++|..++++.+... ...+ +.-+||+-+
T Consensus 182 DiW~T~Y~h~l~----~a~aIvdWvkgTgLrP~L~~-L~e~~~~~FL~~Y~~~l~~aYP~~--~dGr~ll~FpRlFiVA~ 254 (257)
T COG4106 182 DIWHTTYYHQLP----GADAIVDWVKGTGLRPYLDR-LDEEERQRFLDRYLALLAEAYPPR--ADGRVLLAFPRLFIVAT 254 (257)
T ss_pred eeeeeeccccCC----Cccchhhheeccccceeccc-cCHHHHHHHHHHHHHHHHHhCCCc--cCCcEEeecceEEEEEe
Confidence 666643223322 23679999995 55688884 999999999999999999886652 2222 335566555
Q ss_pred e
Q 040129 332 R 332 (333)
Q Consensus 332 r 332 (333)
|
T Consensus 255 ~ 255 (257)
T COG4106 255 R 255 (257)
T ss_pred c
Confidence 4
No 6
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.61 E-value=4.8e-06 Score=78.35 Aligned_cols=150 Identities=18% Similarity=0.207 Sum_probs=87.1
Q ss_pred CcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhc-CCccccceeeccCccccc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTS-LPQEIHFFVAGVPGSFHK 108 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~-l~~~~~~f~~~vpgSFy~ 108 (333)
...+|.|+||++|..+..+.. .+ ..+|+-.|+..+--. ..+. .+...+ +..+.+++..
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~--------~~----------~~~v~giD~s~~~~~-~a~~~~~~~~~--i~~~~~D~~~ 110 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINE--------KY----------GAHVHGVDICEKMVN-IAKLRNSDKNK--IEFEANDILK 110 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHh--------hc----------CCEEEEEECCHHHHH-HHHHHcCcCCc--eEEEECCccc
Confidence 347899999999998765531 11 124556665332111 1111 111111 2223455555
Q ss_pred ccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEE
Q 040129 109 RLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIII 188 (333)
Q Consensus 109 rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl 188 (333)
.-+|++++|+++|..++|+++. .|...+|+.=++-|+|||++++
T Consensus 111 ~~~~~~~FD~V~s~~~l~h~~~------------------------------------~d~~~~l~~i~r~LkPGG~lvi 154 (263)
T PTZ00098 111 KDFPENTFDMIYSRDAILHLSY------------------------------------ADKKKLFEKCYKWLKPNGILLI 154 (263)
T ss_pred CCCCCCCeEEEEEhhhHHhCCH------------------------------------HHHHHHHHHHHHHcCCCcEEEE
Confidence 5688999999999888766421 2334456666688999999999
Q ss_pred EecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEE
Q 040129 189 TNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGL 261 (333)
Q Consensus 189 ~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~ 261 (333)
+-....+.... -+.+...+. .. .+..++.+||.+.++++| |++...+-
T Consensus 155 ~d~~~~~~~~~--------~~~~~~~~~----~~------------~~~~~~~~~~~~~l~~aG-F~~v~~~d 202 (263)
T PTZ00098 155 TDYCADKIENW--------DEEFKAYIK----KR------------KYTLIPIQEYGDLIKSCN-FQNVVAKD 202 (263)
T ss_pred EEeccccccCc--------HHHHHHHHH----hc------------CCCCCCHHHHHHHHHHCC-CCeeeEEe
Confidence 86554332110 011111111 10 123468999999999999 88766553
No 7
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.58 E-value=8.1e-07 Score=80.46 Aligned_cols=188 Identities=14% Similarity=0.201 Sum_probs=112.2
Q ss_pred CCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCccccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHK 108 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~ 108 (333)
.++.+|+|+||++|..+..+... -|..++...|......+..-+.+++ ++ ..+-+++-.
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~-----------------~~~~~~~~~D~~~~~~~~~~~~~~~--~~--~~~~~d~~~ 91 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKR-----------------FPQAEFIALDISAGMLAQAKTKLSE--NV--QFICGDAEK 91 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHh-----------------CCCCcEEEEeChHHHHHHHHHhcCC--CC--eEEecchhh
Confidence 34578999999999877654431 1234577778765555444444442 11 113345556
Q ss_pred ccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEE
Q 040129 109 RLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIII 188 (333)
Q Consensus 109 rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl 188 (333)
..+|++++|+++++.++||+.. ...+|+.-.+-|+|||.+++
T Consensus 92 ~~~~~~~fD~vi~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~~~G~l~~ 133 (240)
T TIGR02072 92 LPLEDSSFDLIVSNLALQWCDD--------------------------------------LSQALSELARVLKPGGLLAF 133 (240)
T ss_pred CCCCCCceeEEEEhhhhhhccC--------------------------------------HHHHHHHHHHHcCCCcEEEE
Confidence 6678999999999999999632 22356667789999999999
Q ss_pred EecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeC-CCCC
Q 040129 189 TNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTN-PSPW 267 (333)
Q Consensus 189 ~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~-p~~~ 267 (333)
..++... + ..+..++.. ....+++.+++...+.+. |....++... +...
T Consensus 134 ~~~~~~~-----------~-~~~~~~~~~----------------~~~~~~~~~~~~~~l~~~--f~~~~~~~~~~~~~~ 183 (240)
T TIGR02072 134 STFGPGT-----------L-HELRQSFGQ----------------HGLRYLSLDELKALLKNS--FELLTLEEELITLSF 183 (240)
T ss_pred EeCCccC-----------H-HHHHHHHHH----------------hccCCCCHHHHHHHHHHh--cCCcEEEEEEEEEeC
Confidence 8655332 1 112222211 112356789999988875 6655544322 1111
Q ss_pred CcCCCChhHHHHHHHHHhhhhhh-hhcChHHHHHHHHHHHHHH
Q 040129 268 LKGRINMPEYIKHVRAATESMFN-KHFSYEVTEEMFRQLLERL 309 (333)
Q Consensus 268 ~~~~~~~~~~a~~iRa~~e~~l~-~hfgeei~delf~r~~~~l 309 (333)
. ....+..++|........ ...+.+...++.+.|.+..
T Consensus 184 ~----~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (240)
T TIGR02072 184 D----DPLDVLRHLKKTGANGLSSGRTSRKQLKAFLERYEQEF 222 (240)
T ss_pred C----CHHHHHHHHHHhccCcCCCCCCCHHHHHHHHHHHHHhh
Confidence 1 225677777775543332 2356666666666665554
No 8
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.58 E-value=2e-06 Score=79.32 Aligned_cols=161 Identities=14% Similarity=0.217 Sum_probs=88.9
Q ss_pred cEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhc-CCccc-cceeeccCccccc
Q 040129 31 TIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTS-LPQEI-HFFVAGVPGSFHK 108 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~-l~~~~-~~f~~~vpgSFy~ 108 (333)
.-+|+|+||++|..+..+.+.+ ..|..+++--|+-. +.-...+. +.... ..-+..+-|++..
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~---------------~~p~~~v~gvD~s~-~ml~~a~~~~~~~~~~~~v~~~~~d~~~ 117 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNI---------------NQPNVKIIGIDNSQ-PMVERCRQHIAAYHSEIPVEILCNDIRH 117 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhc---------------CCCCCeEEEEeCCH-HHHHHHHHHHHhcCCCCCeEEEECChhh
Confidence 3589999999999887665321 01334555555422 11111111 11100 0001223344443
Q ss_pred ccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEE
Q 040129 109 RLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIII 188 (333)
Q Consensus 109 rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl 188 (333)
--+| +.|+++|++++||++. .|...+|+.-.+-|+|||++++
T Consensus 118 ~~~~--~~d~v~~~~~l~~~~~------------------------------------~~~~~~l~~i~~~LkpgG~l~i 159 (239)
T TIGR00740 118 VEIK--NASMVILNFTLQFLPP------------------------------------EDRIALLTKIYEGLNPNGVLVL 159 (239)
T ss_pred CCCC--CCCEEeeecchhhCCH------------------------------------HHHHHHHHHHHHhcCCCeEEEE
Confidence 2233 4789999999999642 2233456666789999999999
Q ss_pred EecCCCCCCCCccchhhHHHHHHHHHHHHHHh-ccCCCHhhh----hcCCcCcccCCHHHHHHHHHhCCcEE
Q 040129 189 TNPSIPDGMPFSEIANGLMYNCMGTILYDMVK-VGLLSEAQV----DSFNLPIYACPPGEFGAVVERNGNFR 255 (333)
Q Consensus 189 ~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~-eG~i~~~~~----d~fn~P~y~ps~~E~~~~ie~~G~F~ 255 (333)
.-..+.++.. ..+.+.+.+..... .|. +++++ +.+.-.....|++|+++.++++| |+
T Consensus 160 ~d~~~~~~~~--------~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aG-F~ 221 (239)
T TIGR00740 160 SEKFRFEDTK--------INHLLIDLHHQFKRANGY-SELEISQKRTALENVMRTDSIETHKARLKNVG-FS 221 (239)
T ss_pred eecccCCCHh--------HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHhccCCCCCHHHHHHHHHHcC-Cc
Confidence 8654443221 11233333333333 343 44443 22333345579999999999999 76
No 9
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.49 E-value=6.5e-07 Score=81.72 Aligned_cols=172 Identities=15% Similarity=0.153 Sum_probs=89.8
Q ss_pred cEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhh-cCCcc--ccceeeccCcccc
Q 040129 31 TIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFT-SLPQE--IHFFVAGVPGSFH 107 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~-~l~~~--~~~f~~~vpgSFy 107 (333)
.-+|+|+||++|..+..+.+. + +|..+|+-.|+..+ .-...+ .+... .+ +.-+.+...
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~--------~--------~~~~~v~gvD~s~~-~~~~a~~~~~~~~~~~--v~~~~~d~~ 106 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEA--------V--------GPEGHVIGLDFSEN-MLSVGRQKVKDAGLHN--VELVHGNAM 106 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHH--------h--------CCCCEEEEEECCHH-HHHHHHHHHHhcCCCc--eEEEEechh
Confidence 468999999999987655431 1 12345666665321 111111 11100 01 122333333
Q ss_pred cccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEE
Q 040129 108 KRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMII 187 (333)
Q Consensus 108 ~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mv 187 (333)
.-.+|++++|++++..++||++.. ..+|+.-.+-|+|||+++
T Consensus 107 ~~~~~~~~fD~V~~~~~l~~~~~~--------------------------------------~~~l~~~~~~Lk~gG~l~ 148 (231)
T TIGR02752 107 ELPFDDNSFDYVTIGFGLRNVPDY--------------------------------------MQVLREMYRVVKPGGKVV 148 (231)
T ss_pred cCCCCCCCccEEEEecccccCCCH--------------------------------------HHHHHHHHHHcCcCeEEE
Confidence 334688999999999999996431 123444457889999999
Q ss_pred EEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeC
Q 040129 188 ITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 188 l~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 263 (333)
+.-.+.++...... .....+..+-..+..+...+........ ..-..+|+.+|+++.+++.| |++.+++.+.
T Consensus 149 ~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~aG-f~~~~~~~~~ 220 (231)
T TIGR02752 149 CLETSQPTIPGFKQ-LYFFYFKYIMPLFGKLFAKSYKEYSWLQ--ESTRDFPGMDELAEMFQEAG-FKDVEVKSYT 220 (231)
T ss_pred EEECCCCCChHHHH-HHHHHHcChhHHhhHHhcCCHHHHHHHH--HHHHHcCCHHHHHHHHHHcC-CCeeEEEEcc
Confidence 87655433211000 0000011111111111111110000000 11235789999999999999 9987777654
No 10
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.47 E-value=1.1e-06 Score=82.00 Aligned_cols=99 Identities=19% Similarity=0.278 Sum_probs=59.2
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEe
Q 040129 111 FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
+|++++|++++..+|||+.. |.. +|+.=++-|+|||++++.+
T Consensus 108 ~~~~~fD~V~~~~vl~~~~~-~~~-------------------------------------~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 108 HLETPVDLILFHAVLEWVAD-PKS-------------------------------------VLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred hcCCCCCEEEehhHHHhhCC-HHH-------------------------------------HHHHHHHHcCCCeEEEEEE
Confidence 45678999999999999754 211 1222336799999999887
Q ss_pred cCCCCCCCCccchhhHHH-HHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEE
Q 040129 191 PSIPDGMPFSEIANGLMY-NCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGL 261 (333)
Q Consensus 191 ~gr~~~~~~~~~~~~~~~-~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~ 261 (333)
..... .++ ..+..-+. .+..|+...+. . .-.|.+..+++|+.+.+++.| |++....-
T Consensus 150 ~n~~~----------~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~p~~~~~~~~l~~~l~~aG-f~~~~~~g 207 (255)
T PRK11036 150 YNANG----------LLMHNMVAGNFD-YVQAGMPKRKK-R-TLSPDYPLDPEQVYQWLEEAG-WQIMGKTG 207 (255)
T ss_pred ECccH----------HHHHHHHccChH-HHHhcCccccc-c-CCCCCCCCCHHHHHHHHHHCC-CeEeeeee
Confidence 54321 111 11111111 12233321111 1 123566778999999999999 99876653
No 11
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.42 E-value=1.3e-06 Score=84.69 Aligned_cols=150 Identities=17% Similarity=0.167 Sum_probs=88.3
Q ss_pred EEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcC----CccccceeeccCcccc
Q 040129 32 IRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSL----PQEIHFFVAGVPGSFH 107 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l----~~~~~~f~~~vpgSFy 107 (333)
-+|+|+||++|..++.+... .+. +|+--| |+-.+..-++.. ....++- -+++.+-
T Consensus 124 ~~VLDIGCG~G~~~~~la~~-----------------g~~-~V~GiD-~S~~~l~q~~a~~~~~~~~~~i~--~~~~d~e 182 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGA-----------------GAK-LVVGID-PSQLFLCQFEAVRKLLGNDQRAH--LLPLGIE 182 (322)
T ss_pred CEEEEeccCCcHHHHHHHHc-----------------CCC-EEEEEc-CCHHHHHHHHHHHHhcCCCCCeE--EEeCCHH
Confidence 58999999999988754421 111 366667 444443332221 1111221 1333332
Q ss_pred cccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEE
Q 040129 108 KRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMII 187 (333)
Q Consensus 108 ~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mv 187 (333)
.--+ ++++|+++|..+|||+.. | ..+|+.=++-|+|||.+|
T Consensus 183 ~lp~-~~~FD~V~s~~vl~H~~d-p-------------------------------------~~~L~~l~~~LkpGG~lv 223 (322)
T PRK15068 183 QLPA-LKAFDTVFSMGVLYHRRS-P-------------------------------------LDHLKQLKDQLVPGGELV 223 (322)
T ss_pred HCCC-cCCcCEEEECChhhccCC-H-------------------------------------HHHHHHHHHhcCCCcEEE
Confidence 2212 678999999999998432 1 223555558899999999
Q ss_pred EEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeCC
Q 040129 188 ITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTNP 264 (333)
Q Consensus 188 l~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p 264 (333)
+..+..+..... . +.+.+....+...++.||.+++...++++| |++.++....+
T Consensus 224 l~~~~i~~~~~~-----~-----------------l~p~~~y~~~~~~~~lps~~~l~~~L~~aG-F~~i~~~~~~~ 277 (322)
T PRK15068 224 LETLVIDGDENT-----V-----------------LVPGDRYAKMRNVYFIPSVPALKNWLERAG-FKDVRIVDVSV 277 (322)
T ss_pred EEEEEecCCCcc-----c-----------------cCchhHHhcCccceeCCCHHHHHHHHHHcC-CceEEEEeCCC
Confidence 985543322110 0 011111222334456799999999999999 99877765543
No 12
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.41 E-value=6.9e-06 Score=76.37 Aligned_cols=95 Identities=14% Similarity=0.256 Sum_probs=57.9
Q ss_pred ceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEecCCC
Q 040129 115 FLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITNPSIP 194 (333)
Q Consensus 115 Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~gr~ 194 (333)
..|+++++.++||++. . +...+|+.=++-|+|||.+++.=.-..
T Consensus 125 ~~D~vv~~~~l~~l~~--~----------------------------------~~~~~l~~i~~~LkpGG~l~l~e~~~~ 168 (247)
T PRK15451 125 NASMVVLNFTLQFLEP--S----------------------------------ERQALLDKIYQGLNPGGALVLSEKFSF 168 (247)
T ss_pred CCCEEehhhHHHhCCH--H----------------------------------HHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 4789999999999753 1 112234444588999999999742222
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhc----CCcCccc-CCHHHHHHHHHhCCcEE
Q 040129 195 DGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDS----FNLPIYA-CPPGEFGAVVERNGNFR 255 (333)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~----fn~P~y~-ps~~E~~~~ie~~G~F~ 255 (333)
++.. ..+.+-..|.++....-.+++++.. ..- ... -|.++..+.+++.| |+
T Consensus 169 ~~~~--------~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~-~~~~~~~~~~~~~L~~aG-F~ 224 (247)
T PRK15451 169 EDAK--------VGELLFNMHHDFKRANGYSELEISQKRSMLEN-VMLTDSVETHKARLHKAG-FE 224 (247)
T ss_pred Ccch--------hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-hcccCCHHHHHHHHHHcC-ch
Confidence 2221 1233444555555444455555543 211 222 48999999999999 65
No 13
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.41 E-value=4.2e-06 Score=84.77 Aligned_cols=191 Identities=15% Similarity=0.231 Sum_probs=105.7
Q ss_pred cEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCccccccc
Q 040129 31 TIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKRL 110 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~rl 110 (333)
.-+|+|+||++|..++.+.+. . ..+|+--|+.. +.-...+.-......=+.-+-+.+....
T Consensus 267 ~~~vLDiGcG~G~~~~~la~~--------~----------~~~v~gvDiS~-~~l~~A~~~~~~~~~~v~~~~~d~~~~~ 327 (475)
T PLN02336 267 GQKVLDVGCGIGGGDFYMAEN--------F----------DVHVVGIDLSV-NMISFALERAIGRKCSVEFEVADCTKKT 327 (475)
T ss_pred CCEEEEEeccCCHHHHHHHHh--------c----------CCEEEEEECCH-HHHHHHHHHhhcCCCceEEEEcCcccCC
Confidence 468999999999876554321 1 12456666532 1111111100000011222334556666
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEe
Q 040129 111 FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
+|++++|+++|..++||+.. |. .+|+.=++-|+|||++++.-
T Consensus 328 ~~~~~fD~I~s~~~l~h~~d-~~-------------------------------------~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 328 YPDNSFDVIYSRDTILHIQD-KP-------------------------------------ALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred CCCCCEEEEEECCcccccCC-HH-------------------------------------HHHHHHHHHcCCCeEEEEEE
Confidence 78999999999999999643 11 22333457899999999997
Q ss_pred cCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeCCCCCCcC
Q 040129 191 PSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTNPSPWLKG 270 (333)
Q Consensus 191 ~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p~~~~~~ 270 (333)
..+....+.. .+...+. ..| ...++.+++...++++| |++...+.+.
T Consensus 370 ~~~~~~~~~~---------~~~~~~~---~~g-------------~~~~~~~~~~~~l~~aG-F~~i~~~d~~------- 416 (475)
T PLN02336 370 YCRSPGTPSP---------EFAEYIK---QRG-------------YDLHDVQAYGQMLKDAG-FDDVIAEDRT------- 416 (475)
T ss_pred eccCCCCCcH---------HHHHHHH---hcC-------------CCCCCHHHHHHHHHHCC-Ceeeeeecch-------
Confidence 7665433211 1111111 112 24578999999999999 9987655432
Q ss_pred CCChhHHHHHHHHHhh--hhhhhhcChHHHHHHHHHHHHHHHH
Q 040129 271 RINMPEYIKHVRAATE--SMFNKHFSYEVTEEMFRQLLERLEE 311 (333)
Q Consensus 271 ~~~~~~~a~~iRa~~e--~~l~~hfgeei~delf~r~~~~l~~ 311 (333)
+.+...+..|...+.. .-+...+|++..+.+...+...+..
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 459 (475)
T PLN02336 417 DQFLQVLQRELDAVEKEKDEFISDFSEEDYNDIVGGWKAKLVR 459 (475)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHhcCHHHHHHHHHhHHHHHhh
Confidence 0122333333333321 1122346777666666666666544
No 14
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.37 E-value=3.3e-06 Score=71.74 Aligned_cols=138 Identities=23% Similarity=0.340 Sum_probs=82.6
Q ss_pred CCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCcccc-
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFH- 107 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy- 107 (333)
+..-+|+|+||+.|.++..+. +. . .++...|.-...-.. ...++..|.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~--------~~---------~--~~~~g~D~~~~~~~~------------~~~~~~~~~~ 69 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALA--------KR---------G--FEVTGVDISPQMIEK------------RNVVFDNFDA 69 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHH--------HT---------T--SEEEEEESSHHHHHH------------TTSEEEEEEC
T ss_pred CCCCEEEEEcCCCCHHHHHHH--------Hh---------C--CEEEEEECCHHHHhh------------hhhhhhhhhh
Confidence 445799999999997754331 11 1 155555543222111 111222221
Q ss_pred -cccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceE
Q 040129 108 -KRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMI 186 (333)
Q Consensus 108 -~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~m 186 (333)
...+|++++|+|+|+.+|||+.. | ..+|+.=.+=|+|||.+
T Consensus 70 ~~~~~~~~~fD~i~~~~~l~~~~d-~-------------------------------------~~~l~~l~~~LkpgG~l 111 (161)
T PF13489_consen 70 QDPPFPDGSFDLIICNDVLEHLPD-P-------------------------------------EEFLKELSRLLKPGGYL 111 (161)
T ss_dssp HTHHCHSSSEEEEEEESSGGGSSH-H-------------------------------------HHHHHHHHHCEEEEEEE
T ss_pred hhhhccccchhhHhhHHHHhhccc-H-------------------------------------HHHHHHHHHhcCCCCEE
Confidence 34468899999999999999663 2 23355555889999999
Q ss_pred EEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeE
Q 040129 187 IITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEV 258 (333)
Q Consensus 187 vl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~ 258 (333)
++....+... .-..+. .. ..... .. --..+.+.++++.++++.| |+|..
T Consensus 112 ~~~~~~~~~~----------~~~~~~----~~---~~~~~---~~--~~~~~~~~~~~~~ll~~~G-~~iv~ 160 (161)
T PF13489_consen 112 VISDPNRDDP----------SPRSFL----KW---RYDRP---YG--GHVHFFSPDELRQLLEQAG-FEIVE 160 (161)
T ss_dssp EEEEEBTTSH----------HHHHHH----HC---CGTCH---HT--TTTEEBBHHHHHHHHHHTT-EEEEE
T ss_pred EEEEcCCcch----------hhhHHH----hc---CCcCc---cC--ceeccCCHHHHHHHHHHCC-CEEEE
Confidence 9999876430 001111 11 11100 00 1125559999999999999 98753
No 15
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.37 E-value=1.9e-05 Score=73.12 Aligned_cols=165 Identities=11% Similarity=0.125 Sum_probs=91.8
Q ss_pred CcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhc-CCccccceeeccCccccc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTS-LPQEIHFFVAGVPGSFHK 108 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~-l~~~~~~f~~~vpgSFy~ 108 (333)
..-+|.|+||++|..+..+. +. ..+|+-.|+-.. .-...+. .+. ..|+ -+..-.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~--------~~-----------~~~v~~~D~s~~-~l~~a~~~~~~--~~~~---~~d~~~ 96 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWR--------ER-----------GSQVTALDLSPP-MLAQARQKDAA--DHYL---AGDIES 96 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHH--------Hc-----------CCeEEEEECCHH-HHHHHHhhCCC--CCEE---EcCccc
Confidence 34689999999998765432 11 124566665321 1001110 110 1122 233333
Q ss_pred ccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEE
Q 040129 109 RLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIII 188 (333)
Q Consensus 109 rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl 188 (333)
--+|++++|+++|+.++||+... ..+|+.-.+-|+|||.+++
T Consensus 97 ~~~~~~~fD~V~s~~~l~~~~d~--------------------------------------~~~l~~~~~~Lk~gG~l~~ 138 (251)
T PRK10258 97 LPLATATFDLAWSNLAVQWCGNL--------------------------------------STALRELYRVVRPGGVVAF 138 (251)
T ss_pred CcCCCCcEEEEEECchhhhcCCH--------------------------------------HHHHHHHHHHcCCCeEEEE
Confidence 34788899999999999995442 1224444578999999999
Q ss_pred EecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeC-CCCC
Q 040129 189 TNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTN-PSPW 267 (333)
Q Consensus 189 ~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~-p~~~ 267 (333)
..++.++ +.-+.++|..+- + -....-+++.+|+...+...| +.++ .+.+. +.+
T Consensus 139 ~~~~~~~------------~~el~~~~~~~~--~---------~~~~~~~~~~~~l~~~l~~~~-~~~~-~~~~~~~f~- 192 (251)
T PRK10258 139 TTLVQGS------------LPELHQAWQAVD--E---------RPHANRFLPPDAIEQALNGWR-YQHH-IQPITLWFD- 192 (251)
T ss_pred EeCCCCc------------hHHHHHHHHHhc--c---------CCccccCCCHHHHHHHHHhCC-ceee-eeEEEEECC-
Confidence 9887543 122344454331 1 112233578999999998776 5542 22221 121
Q ss_pred CcCCCChhHHHHHHHHHhhhh
Q 040129 268 LKGRINMPEYIKHVRAATESM 288 (333)
Q Consensus 268 ~~~~~~~~~~a~~iRa~~e~~ 288 (333)
++..+-..+|..-...
T Consensus 193 -----~~~~~l~~lk~~G~~~ 208 (251)
T PRK10258 193 -----DALSAMRSLKGIGATH 208 (251)
T ss_pred -----CHHHHHHHHHHhCCCC
Confidence 2245666677655443
No 16
>PLN02244 tocopherol O-methyltransferase
Probab=98.31 E-value=0.00012 Score=71.32 Aligned_cols=98 Identities=19% Similarity=0.227 Sum_probs=57.6
Q ss_pred cCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEE
Q 040129 110 LFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIIT 189 (333)
Q Consensus 110 lfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~ 189 (333)
-||++++|+++|..++|++... ..+|+.=.+-|+|||++++.
T Consensus 181 ~~~~~~FD~V~s~~~~~h~~d~--------------------------------------~~~l~e~~rvLkpGG~lvi~ 222 (340)
T PLN02244 181 PFEDGQFDLVWSMESGEHMPDK--------------------------------------RKFVQELARVAAPGGRIIIV 222 (340)
T ss_pred CCCCCCccEEEECCchhccCCH--------------------------------------HHHHHHHHHHcCCCcEEEEE
Confidence 4688999999999999885321 12233334779999999998
Q ss_pred ecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEE
Q 040129 190 NPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGL 261 (333)
Q Consensus 190 ~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~ 261 (333)
.....+..+... ... ..-...+..+.. .+.+| .+.+.+|+...+++.| |.....+-
T Consensus 223 ~~~~~~~~~~~~-~l~---~~~~~~~~~i~~----------~~~~p-~~~s~~~~~~~l~~aG-f~~v~~~d 278 (340)
T PLN02244 223 TWCHRDLEPGET-SLK---PDEQKLLDKICA----------AYYLP-AWCSTSDYVKLAESLG-LQDIKTED 278 (340)
T ss_pred Eecccccccccc-cCC---HHHHHHHHHHHh----------hccCC-CCCCHHHHHHHHHHCC-CCeeEeee
Confidence 655433221111 000 011112222211 12344 2358999999999999 88755543
No 17
>PRK08317 hypothetical protein; Provisional
Probab=98.28 E-value=0.00012 Score=65.91 Aligned_cols=202 Identities=16% Similarity=0.154 Sum_probs=99.8
Q ss_pred CcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCc-cccceeeccCccccc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQ-EIHFFVAGVPGSFHK 108 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~-~~~~f~~~vpgSFy~ 108 (333)
...+|+|+||++|..+..+.+.. .|.-+++--|+-.+-....-+.... ..++ ..+.+.+..
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~----------------~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~--~~~~~d~~~ 80 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRV----------------GPEGRVVGIDRSEAMLALAKERAAGLGPNV--EFVRGDADG 80 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhc----------------CCCcEEEEEeCCHHHHHHHHHHhhCCCCce--EEEeccccc
Confidence 35789999999998776655322 0122344444432211111111000 0000 111122222
Q ss_pred ccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEE
Q 040129 109 RLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIII 188 (333)
Q Consensus 109 rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl 188 (333)
.-+|++++|++++..++||+... ..+|+.-.+-|+|||.+++
T Consensus 81 ~~~~~~~~D~v~~~~~~~~~~~~--------------------------------------~~~l~~~~~~L~~gG~l~~ 122 (241)
T PRK08317 81 LPFPDGSFDAVRSDRVLQHLEDP--------------------------------------ARALAEIARVLRPGGRVVV 122 (241)
T ss_pred CCCCCCCceEEEEechhhccCCH--------------------------------------HHHHHHHHHHhcCCcEEEE
Confidence 33677899999999999996441 2234555578999999998
Q ss_pred EecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeC-CC-C
Q 040129 189 TNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTN-PS-P 266 (333)
Q Consensus 189 ~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~-p~-~ 266 (333)
....-+... ... .....+..+.+.|.. . +.-| .+..++...++++| |++..++.+. +. .
T Consensus 123 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~~---~----------~~~~---~~~~~~~~~l~~aG-f~~~~~~~~~~~~~~ 183 (241)
T PRK08317 123 LDTDWDTLV-WHS-GDRALMRKILNFWSD---H----------FADP---WLGRRLPGLFREAG-LTDIEVEPYTLIETD 183 (241)
T ss_pred EecCCCcee-ecC-CChHHHHHHHHHHHh---c----------CCCC---cHHHHHHHHHHHcC-CCceeEEEEEEeccC
Confidence 864322110 000 011112222222221 1 1111 23468999999999 9887777664 21 2
Q ss_pred CCcCCCChhHHHHHHHHHhhhhhhhhcChHHHHHHHHHHHHHHH
Q 040129 267 WLKGRINMPEYIKHVRAATESMFNKHFSYEVTEEMFRQLLERLE 310 (333)
Q Consensus 267 ~~~~~~~~~~~a~~iRa~~e~~l~~hfgeei~delf~r~~~~l~ 310 (333)
+. .......+..+++.+.+ ..-..++-+++++..+++...
T Consensus 184 ~~-~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~ 223 (241)
T PRK08317 184 LK-EADKGFGLIRAARRAVE---AGGISADEADAWLADLAQLAR 223 (241)
T ss_pred cc-hhhHHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHHh
Confidence 21 11111223333333322 122345666777777766543
No 18
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.27 E-value=1.1e-05 Score=72.45 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=16.7
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
.-+|+|+||++|.+++.+.
T Consensus 31 ~~~vLDiGcG~G~~a~~La 49 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLA 49 (197)
T ss_pred CCcEEEECCCCCHHHHHHH
Confidence 3689999999999998876
No 19
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.26 E-value=2.8e-05 Score=73.02 Aligned_cols=104 Identities=13% Similarity=0.152 Sum_probs=59.3
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEe
Q 040129 111 FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
||++|+|++++++++||+.. | ..+|+.=.+-|+|||++++.-
T Consensus 141 ~~~~sfD~V~~~~~l~~~~d-~-------------------------------------~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 141 FDDCYFDAITMGYGLRNVVD-R-------------------------------------LKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred CCCCCEeEEEEecccccCCC-H-------------------------------------HHHHHHHHHHcCcCcEEEEEE
Confidence 78899999999999999642 1 122444457899999999998
Q ss_pred cCCCCCCCCccchhhHHHHHH-HHHHHHHH-hccCCCHhhhhcC-CcCcccCCHHHHHHHHHhCCcEEEeEEE
Q 040129 191 PSIPDGMPFSEIANGLMYNCM-GTILYDMV-KVGLLSEAQVDSF-NLPIYACPPGEFGAVVERNGNFRIEVMG 260 (333)
Q Consensus 191 ~gr~~~~~~~~~~~~~~~~~l-~~~l~~mv-~eG~i~~~~~d~f-n~P~y~ps~~E~~~~ie~~G~F~I~~le 260 (333)
.+.++... ...+++.. ...+.-+. .-|.- +..... ..=-.+++.+|+.+.+++.| |++.+..
T Consensus 183 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~y~~l~~s~~~f~s~~el~~ll~~aG-F~~~~~~ 247 (261)
T PLN02233 183 FNKSTQPF-----TTSMQEWMIDNVVVPVATGYGLA--KEYEYLKSSINEYLTGEELEKLALEAG-FSSAKHY 247 (261)
T ss_pred CCCCCcHH-----HHHHHHHHHhhhhhHHHHHhCCh--HHHHHHHHHHHhcCCHHHHHHHHHHCC-CCEEEEE
Confidence 77654321 11122111 11111010 01210 110000 00012789999999999999 8865443
No 20
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.24 E-value=5.3e-06 Score=77.09 Aligned_cols=171 Identities=17% Similarity=0.162 Sum_probs=93.5
Q ss_pred CcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCcccccc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKR 109 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~r 109 (333)
...+|+|+||++|--++.+...+ ++-+|..-|.-.+=.+.-=+-+.+....-+.-|=|..-+=
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~-----------------g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L 113 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSV-----------------GTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL 113 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhc-----------------CCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC
Confidence 46999999999999988876432 0122333332222111111111111001022233344444
Q ss_pred cCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEE
Q 040129 110 LFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIIT 189 (333)
Q Consensus 110 lfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~ 189 (333)
-||++|+|++.+++.||++.+.+..|. -=++-|+|||++++.
T Consensus 114 Pf~D~sFD~vt~~fglrnv~d~~~aL~--------------------------------------E~~RVlKpgG~~~vl 155 (238)
T COG2226 114 PFPDNSFDAVTISFGLRNVTDIDKALK--------------------------------------EMYRVLKPGGRLLVL 155 (238)
T ss_pred CCCCCccCEEEeeehhhcCCCHHHHHH--------------------------------------HHHHhhcCCeEEEEE
Confidence 599999999999999999887665543 223789999999988
Q ss_pred ecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeE
Q 040129 190 NPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEV 258 (333)
Q Consensus 190 ~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~ 258 (333)
=..+++..........+.+..+--.+-.++.++ .++.---.....-+|+.+|+...+++.| |+...
T Consensus 156 e~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~--~~~y~yL~eSi~~~p~~~~l~~~~~~~g-f~~i~ 221 (238)
T COG2226 156 EFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKD--AEAYEYLAESIRRFPDQEELKQMIEKAG-FEEVR 221 (238)
T ss_pred EcCCCCchhhHHHHHHHHHHhHhhhhceeeecC--hHHHHHHHHHHHhCCCHHHHHHHHHhcC-ceEEe
Confidence 767665433221011111111111111121100 1111112234556799999999999999 87544
No 21
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.21 E-value=4.2e-05 Score=69.44 Aligned_cols=81 Identities=14% Similarity=0.178 Sum_probs=55.5
Q ss_pred CceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEecCC
Q 040129 114 KFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITNPSI 193 (333)
Q Consensus 114 ~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~gr 193 (333)
+++|+++|..++|++.. +..+|+.=++-|+|||++++.-...
T Consensus 66 ~~fD~I~~~~~l~~~~~--------------------------------------~~~~l~~~~~~LkpgG~l~i~~~~~ 107 (224)
T smart00828 66 DTYDLVFGFEVIHHIKD--------------------------------------KMDLFSNISRHLKDGGHLVLADFIA 107 (224)
T ss_pred CCCCEeehHHHHHhCCC--------------------------------------HHHHHHHHHHHcCCCCEEEEEEccc
Confidence 47999999999999532 2234555568899999999875432
Q ss_pred CCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeC
Q 040129 194 PDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 263 (333)
.... . . ..-..+.|.++.+|+...+++.| |++...+.+.
T Consensus 108 ~~~~---~----------------------~-----~~~~~~~~~~s~~~~~~~l~~~G-f~~~~~~~~~ 146 (224)
T smart00828 108 NLLS---A----------------------I-----EHEETTSYLVTREEWAELLARNN-LRVVEGVDAS 146 (224)
T ss_pred ccCc---c----------------------c-----cccccccccCCHHHHHHHHHHCC-CeEEEeEECc
Confidence 1100 0 0 00123456899999999999999 9987777653
No 22
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.17 E-value=0.00022 Score=70.75 Aligned_cols=132 Identities=8% Similarity=0.076 Sum_probs=80.3
Q ss_pred CCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEecC
Q 040129 113 EKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITNPS 192 (333)
Q Consensus 113 ~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g 192 (333)
++++|.++|...+||+.. +++..+++.=.+-|+|||++++...+
T Consensus 226 ~~~fD~Ivs~~~~ehvg~------------------------------------~~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 226 NGQFDRIVSVGMFEHVGP------------------------------------KNYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred CCCCCEEEEeCchhhCCh------------------------------------HHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 468999999988888421 23344556666889999999998877
Q ss_pred CCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCc-ccCCHHHHHHHHHhCCcEEEeEEEEeCCCCCCcCC
Q 040129 193 IPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPI-YACPPGEFGAVVERNGNFRIEVMGLTNPSPWLKGR 271 (333)
Q Consensus 193 r~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~-y~ps~~E~~~~ie~~G~F~I~~le~~~p~~~~~~~ 271 (333)
.+...... ..-++.+.+|- +.|+.+++....+ .| |+|+.++.+.++
T Consensus 270 ~~~~~~~~-------------------------~~~i~~yifp~g~lps~~~i~~~~~-~~-~~v~d~~~~~~h------ 316 (383)
T PRK11705 270 SNKTDTNV-------------------------DPWINKYIFPNGCLPSVRQIAQASE-GL-FVMEDWHNFGAD------ 316 (383)
T ss_pred CCCCCCCC-------------------------CCCceeeecCCCcCCCHHHHHHHHH-CC-cEEEEEecChhh------
Confidence 65421100 01123455663 6899999999877 46 998888765321
Q ss_pred CChhHHHHHHHHHhhh--hhhhhcChHHHHHHHHHHHHHHHHhhhh
Q 040129 272 INMPEYIKHVRAATES--MFNKHFSYEVTEEMFRQLLERLEEINDK 315 (333)
Q Consensus 272 ~~~~~~a~~iRa~~e~--~l~~hfgeei~delf~r~~~~l~~~~~~ 315 (333)
+++++..|.+.|... -+++-+|++. -.++..|-..++.....
T Consensus 317 -y~~TL~~W~~~f~~~~~~~~~~~~~~~-~r~w~~yl~~~~~~F~~ 360 (383)
T PRK11705 317 -YDRTLMAWHENFEAAWPELADNYSERF-YRMWRYYLLSCAGAFRA 360 (383)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHhC
Confidence 345566665554443 1233455443 33455566555555444
No 23
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.14 E-value=2e-05 Score=76.22 Aligned_cols=90 Identities=12% Similarity=0.087 Sum_probs=57.9
Q ss_pred CCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEec
Q 040129 112 PEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITNP 191 (333)
Q Consensus 112 P~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~ 191 (333)
+.+++|.|+|+.+|||+.. | ..+|+.=++-|+|||.||+...
T Consensus 185 ~~~~FD~V~s~gvL~H~~d-p-------------------------------------~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 185 ELYAFDTVFSMGVLYHRKS-P-------------------------------------LEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred CCCCcCEEEEcchhhccCC-H-------------------------------------HHHHHHHHHhcCCCCEEEEEEE
Confidence 4468999999999999532 1 1234555588999999999865
Q ss_pred CCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEe
Q 040129 192 SIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLT 262 (333)
Q Consensus 192 gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~ 262 (333)
..+.... .. +.+.+....+...++.||.+++...++++| |+..++...
T Consensus 227 ~i~g~~~-----~~-----------------l~p~~ry~k~~nv~flpS~~~L~~~L~~aG-F~~V~i~~~ 274 (314)
T TIGR00452 227 VIDGDLN-----TV-----------------LVPKDRYAKMKNVYFIPSVSALKNWLEKVG-FENFRILDV 274 (314)
T ss_pred EecCccc-----cc-----------------cCchHHHHhccccccCCCHHHHHHHHHHCC-CeEEEEEec
Confidence 4321110 00 011111223334567789999999999999 887666544
No 24
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.12 E-value=2.2e-05 Score=71.15 Aligned_cols=168 Identities=17% Similarity=0.165 Sum_probs=89.2
Q ss_pred cEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCc---cccceeeccCcccc
Q 040129 31 TIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQ---EIHFFVAGVPGSFH 107 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~---~~~~f~~~vpgSFy 107 (333)
..+|+|+||++|..+..+.... ++..+++..|+..+-....=+.+.. ..++ ..+-+++.
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~----------------~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~--~~~~~d~~ 113 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAV----------------GKTGEVVGLDFSEGMLAVGREKLRDLGLSGNV--EFVQGDAE 113 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHc----------------CCCCeEEEEeCCHHHHHHHHHhhcccccccCe--EEEecccc
Confidence 4799999999999877654321 1134566666643222211111111 0111 11224445
Q ss_pred cccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEE
Q 040129 108 KRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMII 187 (333)
Q Consensus 108 ~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mv 187 (333)
...++.+++|++++++++|+++..+ .+|+.-.+-|+|||+++
T Consensus 114 ~~~~~~~~~D~I~~~~~l~~~~~~~--------------------------------------~~l~~~~~~L~~gG~li 155 (239)
T PRK00216 114 ALPFPDNSFDAVTIAFGLRNVPDID--------------------------------------KALREMYRVLKPGGRLV 155 (239)
T ss_pred cCCCCCCCccEEEEecccccCCCHH--------------------------------------HHHHHHHHhccCCcEEE
Confidence 5456778999999999999865421 23555567899999998
Q ss_pred EEecCCCCCCCCccchhhHHHHHHHH-HH---HHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEe
Q 040129 188 ITNPSIPDGMPFSEIANGLMYNCMGT-IL---YDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLT 262 (333)
Q Consensus 188 l~~~gr~~~~~~~~~~~~~~~~~l~~-~l---~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~ 262 (333)
+.-...++... ....++.... .+ ..+........+.+. +.--.+++.+|+..+++++| |++.+...+
T Consensus 156 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~ 226 (239)
T PRK00216 156 ILEFSKPTNPP-----LKKAYDFYLFKVLPLIGKLISKNAEAYSYLA--ESIRAFPDQEELAAMLEEAG-FERVRYRNL 226 (239)
T ss_pred EEEecCCCchH-----HHHHHHHHHHhhhHHHHHHHcCCcHHHHHHH--HHHHhCCCHHHHHHHHHhCC-Cceeeeeee
Confidence 77544433211 0111111110 00 111111100000000 00123579999999999999 988777654
No 25
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.10 E-value=0.00011 Score=71.37 Aligned_cols=94 Identities=11% Similarity=0.155 Sum_probs=58.9
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEe
Q 040129 111 FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
++++++|++++..+|||+... ..||+.=++-|+|||++++..
T Consensus 194 ~~~~~FD~Vi~~~vLeHv~d~--------------------------------------~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 194 DEGRKFDAVLSLEVIEHVANP--------------------------------------AEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred hccCCCCEEEEhhHHHhcCCH--------------------------------------HHHHHHHHHHcCCCcEEEEEE
Confidence 567899999999999996541 124555557799999999998
Q ss_pred cCCCCCCCCccchhhHHHHHHH-HHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEE
Q 040129 191 PSIPDGMPFSEIANGLMYNCMG-TILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMG 260 (333)
Q Consensus 191 ~gr~~~~~~~~~~~~~~~~~l~-~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le 260 (333)
..+... ......+. .-+...+..| ......+.+++|+...+++.| |++..+.
T Consensus 236 ~nr~~~--------~~~~~i~~~eyi~~~lp~g---------th~~~~f~tp~eL~~lL~~aG-f~i~~~~ 288 (322)
T PLN02396 236 INRTMR--------AYASTIVGAEYILRWLPKG---------THQWSSFVTPEELSMILQRAS-VDVKEMA 288 (322)
T ss_pred CCcCHH--------HHHHhhhhHHHHHhcCCCC---------CcCccCCCCHHHHHHHHHHcC-CeEEEEe
Confidence 654310 11111111 1111111112 111123679999999999999 9988887
No 26
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.07 E-value=2.3e-05 Score=76.57 Aligned_cols=145 Identities=14% Similarity=0.211 Sum_probs=83.8
Q ss_pred cEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCccccccc
Q 040129 31 TIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKRL 110 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~rl 110 (333)
..+|+|+||++|..++.+.+.. +..+|...|+..+--. ..+......++ ..+.|+...--
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~-----------------~~~~VtgVD~S~~mL~-~A~~k~~~~~i--~~i~gD~e~lp 173 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHV-----------------DAKNVTILDQSPHQLA-KAKQKEPLKEC--KIIEGDAEDLP 173 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHC-----------------CCCEEEEEECCHHHHH-HHHHhhhccCC--eEEeccHHhCC
Confidence 4799999999999886654311 1134555665322111 11111101111 11444444444
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEe
Q 040129 111 FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
+|++++|+++++.++|++.... ..|+.=.+-|+|||++++.-
T Consensus 174 ~~~~sFDvVIs~~~L~~~~d~~--------------------------------------~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 174 FPTDYADRYVSAGSIEYWPDPQ--------------------------------------RGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred CCCCceeEEEEcChhhhCCCHH--------------------------------------HHHHHHHHhcCCCcEEEEEE
Confidence 7889999999999999843211 12455558899999998763
Q ss_pred cCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeC
Q 040129 191 PSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 191 ~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 263 (333)
...++ .| +...+.++ -..+++.+|+.+.+++.| |+...++.+.
T Consensus 216 ~~~p~-----------~~--~~r~~~~~----------------~~~~~t~eEl~~lL~~aG-F~~V~i~~i~ 258 (340)
T PLN02490 216 PVHPT-----------FW--LSRFFADV----------------WMLFPKEEEYIEWFTKAG-FKDVKLKRIG 258 (340)
T ss_pred ecCcc-----------hh--HHHHhhhh----------------hccCCCHHHHHHHHHHCC-CeEEEEEEcC
Confidence 22111 00 11100100 012479999999999999 9877777654
No 27
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.05 E-value=2.7e-06 Score=78.81 Aligned_cols=109 Identities=19% Similarity=0.267 Sum_probs=35.3
Q ss_pred ccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCc
Q 040129 105 SFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGG 184 (333)
Q Consensus 105 SFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG 184 (333)
..-.==||++|+|.+.+++.||-+...+. .|+.=.+-|||||
T Consensus 106 da~~lp~~d~sfD~v~~~fglrn~~d~~~--------------------------------------~l~E~~RVLkPGG 147 (233)
T PF01209_consen 106 DAEDLPFPDNSFDAVTCSFGLRNFPDRER--------------------------------------ALREMYRVLKPGG 147 (233)
T ss_dssp BTTB--S-TT-EEEEEEES-GGG-SSHHH--------------------------------------HHHHHHHHEEEEE
T ss_pred CHHHhcCCCCceeEEEHHhhHHhhCCHHH--------------------------------------HHHHHHHHcCCCe
Confidence 33333479999999999999998643221 1333337899999
Q ss_pred eEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcC----CcCcccCCHHHHHHHHHhCCcEEEeEE
Q 040129 185 MIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSF----NLPIYACPPGEFGAVVERNGNFRIEVM 259 (333)
Q Consensus 185 ~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~f----n~P~y~ps~~E~~~~ie~~G~F~I~~l 259 (333)
++++.=.++++... ...+|...-..+.=.+ -++++.+ .+.+ ..-.-+|+.+|+.+.++++| |+..+.
T Consensus 148 ~l~ile~~~p~~~~-----~~~~~~~y~~~ilP~~-g~l~~~~-~~~Y~yL~~Si~~f~~~~~~~~~l~~~G-f~~v~~ 218 (233)
T PF01209_consen 148 RLVILEFSKPRNPL-----LRALYKFYFKYILPLI-GRLLSGD-REAYRYLPESIRRFPSPEELKELLEEAG-FKNVEY 218 (233)
T ss_dssp EEEEEEEEB-SSHH-----HHHHHHH-----------------------------------------------------
T ss_pred EEEEeeccCCCCch-----hhceeeeeeccccccc-ccccccc-cccccccccccccccccccccccccccc-cccccc
Confidence 99988777765321 1112221111000000 0222222 1211 12235789999999999999 874333
No 28
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.98 E-value=0.00012 Score=65.71 Aligned_cols=166 Identities=14% Similarity=0.196 Sum_probs=88.5
Q ss_pred CcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCcccccc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKR 109 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~r 109 (333)
...+|+|+||+.|..+..+.... +...+++.-|.-..-....=+.++...++ .-+.+++...
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~----------------~~~~~~~~iD~~~~~~~~~~~~~~~~~~i--~~~~~d~~~~ 100 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSA----------------PDRGKVTGVDFSSEMLEVAKKKSELPLNI--EFIQADAEAL 100 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhc----------------CCCceEEEEECCHHHHHHHHHHhccCCCc--eEEecchhcC
Confidence 45799999999999876654321 11134566665321111111111100111 1122444454
Q ss_pred cCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEE
Q 040129 110 LFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIIT 189 (333)
Q Consensus 110 lfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~ 189 (333)
.++++++|+++++..+|+... ...+|+.-.+-|+|||++++.
T Consensus 101 ~~~~~~~D~i~~~~~~~~~~~--------------------------------------~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 101 PFEDNSFDAVTIAFGLRNVTD--------------------------------------IQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred CCCCCcEEEEEEeeeeCCccc--------------------------------------HHHHHHHHHHHcCCCcEEEEE
Confidence 577889999999999988432 223466777899999999976
Q ss_pred ecCCCCCCCCccchhhHHHHHHHHHHHH-HHh--ccCCCHhhhhcCC----cCcccCCHHHHHHHHHhCCcEEEeEEEEe
Q 040129 190 NPSIPDGMPFSEIANGLMYNCMGTILYD-MVK--VGLLSEAQVDSFN----LPIYACPPGEFGAVVERNGNFRIEVMGLT 262 (333)
Q Consensus 190 ~~gr~~~~~~~~~~~~~~~~~l~~~l~~-mv~--eG~i~~~~~d~fn----~P~y~ps~~E~~~~ie~~G~F~I~~le~~ 262 (333)
-.-.+...+ +..+.+.+.. |.. .+..+.. .+.+. ...-+++.+|++.++++.| |++...+..
T Consensus 143 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~ 211 (223)
T TIGR01934 143 EFSKPANAL---------LKKFYKFYLKNVLPSIGGLISKN-AEAYTYLPESIRAFPSQEELAAMLKEAG-FEEVRYRSL 211 (223)
T ss_pred EecCCCchh---------hHHHHHHHHHHhhhhhhhhhcCC-chhhHHHHHHHHhCCCHHHHHHHHHHcC-Cccceeeee
Confidence 443322211 1111222111 110 0111100 11111 1122578999999999999 887766644
No 29
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.98 E-value=3.7e-05 Score=61.65 Aligned_cols=93 Identities=24% Similarity=0.391 Sum_probs=65.9
Q ss_pred EEEEeecCCCCcccHHHHH--------------HHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccc
Q 040129 32 IRLADCGCAVGPNTFNAMQ--------------DLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHF 97 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~~--------------~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~ 97 (333)
-+|.|+||++|..++.+.+ ..++..+++..... ..+.++++..|+ ..++...
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~i~~~~~d~-~~~~~~~---------- 68 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG---LSDRITFVQGDA-EFDPDFL---------- 68 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT---TTTTEEEEESCC-HGGTTTS----------
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEECcc-ccCcccC----------
Confidence 5799999999999999986 67777777763322 246788888877 2222211
Q ss_pred eeeccCcccccccCCCCceeEEEecc-ccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhh
Q 040129 98 FVAGVPGSFHKRLFPEKFLHLVHVSY-ALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNR 176 (333)
Q Consensus 98 f~~~vpgSFy~rlfP~~Sv~~~~Ss~-alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~R 176 (333)
..+|+++++. ++|++-.. .+...+|+.-
T Consensus 69 ----------------~~~D~v~~~~~~~~~~~~~-----------------------------------~~~~~~l~~~ 97 (112)
T PF12847_consen 69 ----------------EPFDLVICSGFTLHFLLPL-----------------------------------DERRRVLERI 97 (112)
T ss_dssp ----------------SCEEEEEECSGSGGGCCHH-----------------------------------HHHHHHHHHH
T ss_pred ----------------CCCCEEEECCCccccccch-----------------------------------hHHHHHHHHH
Confidence 1299999999 77753221 2445567777
Q ss_pred hhhhccCceEEEE
Q 040129 177 AKEIVPGGMIIIT 189 (333)
Q Consensus 177 a~EL~~GG~mvl~ 189 (333)
.+-|+|||+|++.
T Consensus 98 ~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 98 RRLLKPGGRLVIN 110 (112)
T ss_dssp HHHEEEEEEEEEE
T ss_pred HHhcCCCcEEEEE
Confidence 7999999999986
No 30
>PRK06202 hypothetical protein; Provisional
Probab=97.96 E-value=0.00013 Score=66.92 Aligned_cols=85 Identities=16% Similarity=0.235 Sum_probs=47.6
Q ss_pred CCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccc-eeeccCcccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHF-FVAGVPGSFH 107 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~-f~~~vpgSFy 107 (333)
.+..+|+|+||++|..+..+... .+ +. .+..+|.-.|+-. +.-...+......++ +..+....+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~----~~----~~-----g~~~~v~gvD~s~-~~l~~a~~~~~~~~~~~~~~~~~~l- 123 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARW----AR----RD-----GLRLEVTAIDPDP-RAVAFARANPRRPGVTFRQAVSDEL- 123 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHH----HH----hC-----CCCcEEEEEcCCH-HHHHHHHhccccCCCeEEEEecccc-
Confidence 44679999999999988754422 11 11 2345677777643 222222222111111 222221211
Q ss_pred cccCCCCceeEEEeccccccccC
Q 040129 108 KRLFPEKFLHLVHVSYALHWLSK 130 (333)
Q Consensus 108 ~rlfP~~Sv~~~~Ss~alHWLS~ 130 (333)
-++++++|+++|+.+|||+..
T Consensus 124 --~~~~~~fD~V~~~~~lhh~~d 144 (232)
T PRK06202 124 --VAEGERFDVVTSNHFLHHLDD 144 (232)
T ss_pred --cccCCCccEEEECCeeecCCh
Confidence 126789999999999999754
No 31
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=97.94 E-value=6.7e-05 Score=67.33 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=16.9
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
+-+|+|+||++|.+++.+.
T Consensus 31 ~~~vLDiGcG~G~~a~~la 49 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLS 49 (195)
T ss_pred CCcEEEeCCCCCHHHHHHH
Confidence 4699999999999998776
No 32
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=97.93 E-value=2.2e-05 Score=60.30 Aligned_cols=49 Identities=29% Similarity=0.458 Sum_probs=35.2
Q ss_pred cCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhc
Q 040129 102 VPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIV 181 (333)
Q Consensus 102 vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 181 (333)
+-+++..--||++|+|+++++.++||+ + |...+|+.=.+-|+
T Consensus 47 ~~~d~~~l~~~~~sfD~v~~~~~~~~~---~-----------------------------------~~~~~l~e~~rvLk 88 (95)
T PF08241_consen 47 RQGDAEDLPFPDNSFDVVFSNSVLHHL---E-----------------------------------DPEAALREIYRVLK 88 (95)
T ss_dssp EESBTTSSSS-TT-EEEEEEESHGGGS---S-----------------------------------HHHHHHHHHHHHEE
T ss_pred eeehHHhCccccccccccccccceeec---c-----------------------------------CHHHHHHHHHHHcC
Confidence 344566668999999999999999997 1 22334555568899
Q ss_pred cCceEEE
Q 040129 182 PGGMIII 188 (333)
Q Consensus 182 ~GG~mvl 188 (333)
|||++++
T Consensus 89 ~gG~l~~ 95 (95)
T PF08241_consen 89 PGGRLVI 95 (95)
T ss_dssp EEEEEEE
T ss_pred cCeEEeC
Confidence 9999985
No 33
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.81 E-value=7.5e-05 Score=71.01 Aligned_cols=123 Identities=16% Similarity=0.310 Sum_probs=76.4
Q ss_pred EEEeecCCCCcccHHHHH------------HHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceee
Q 040129 33 RLADCGCAVGPNTFNAMQ------------DLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVA 100 (333)
Q Consensus 33 ~IaD~GCs~G~Ns~~~~~------------~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~ 100 (333)
+|+|+||++|.|++.+.. ..|+.+++.....+ ..+++..-|+..-+
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~-----l~v~~~~~D~~~~~----------------- 180 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKEN-----LNIRTGLYDINSAS----------------- 180 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC-----CceEEEEechhccc-----------------
Confidence 899999999999988763 33444443332211 13333333332111
Q ss_pred ccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhh
Q 040129 101 GVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEI 180 (333)
Q Consensus 101 ~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL 180 (333)
+++++|+++|+.+||+++. .++..+|+.-.+-|
T Consensus 181 -----------~~~~fD~I~~~~vl~~l~~------------------------------------~~~~~~l~~~~~~L 213 (287)
T PRK12335 181 -----------IQEEYDFILSTVVLMFLNR------------------------------------ERIPAIIKNMQEHT 213 (287)
T ss_pred -----------ccCCccEEEEcchhhhCCH------------------------------------HHHHHHHHHHHHhc
Confidence 1467999999999999642 24555677777889
Q ss_pred ccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcC-cccCCHHHHHHHHHhCCcEEEeEE
Q 040129 181 VPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLP-IYACPPGEFGAVVERNGNFRIEVM 259 (333)
Q Consensus 181 ~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P-~y~ps~~E~~~~ie~~G~F~I~~l 259 (333)
+|||++++......+..+ ...| -+..+.+|+++.+.. |+|.+.
T Consensus 214 kpgG~~l~v~~~~~~~~~---------------------------------~~~p~~~~~~~~el~~~~~~---~~i~~~ 257 (287)
T PRK12335 214 NPGGYNLIVCAMDTEDYP---------------------------------CPMPFSFTFKEGELKDYYQD---WEIVKY 257 (287)
T ss_pred CCCcEEEEEEecccccCC---------------------------------CCCCCCcccCHHHHHHHhCC---CEEEEE
Confidence 999997765433222110 0122 355778998888863 888776
Q ss_pred E
Q 040129 260 G 260 (333)
Q Consensus 260 e 260 (333)
+
T Consensus 258 ~ 258 (287)
T PRK12335 258 N 258 (287)
T ss_pred e
Confidence 4
No 34
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.79 E-value=9.6e-05 Score=66.62 Aligned_cols=91 Identities=16% Similarity=0.281 Sum_probs=60.6
Q ss_pred cEEEEeecCCCCcccHHHH------------HHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccce
Q 040129 31 TIRLADCGCAVGPNTFNAM------------QDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFF 98 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f 98 (333)
+-++.|+||+.|+||+.+. ...|+.+.+..... .-+|+...-|+-.-+|
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~-----~l~i~~~~~Dl~~~~~-------------- 91 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEE-----GLDIRTRVADLNDFDF-------------- 91 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHT-----T-TEEEEE-BGCCBS---------------
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhc-----CceeEEEEecchhccc--------------
Confidence 4589999999999999987 44666666554432 2348888888743322
Q ss_pred eeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhh
Q 040129 99 VAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAK 178 (333)
Q Consensus 99 ~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~ 178 (333)
++..|+++|...+|.|.. . .+..+++.-.+
T Consensus 92 --------------~~~yD~I~st~v~~fL~~---~---------------------------------~~~~i~~~m~~ 121 (192)
T PF03848_consen 92 --------------PEEYDFIVSTVVFMFLQR---E---------------------------------LRPQIIENMKA 121 (192)
T ss_dssp --------------TTTEEEEEEESSGGGS-G---G---------------------------------GHHHHHHHHHH
T ss_pred --------------cCCcCEEEEEEEeccCCH---H---------------------------------HHHHHHHHHHh
Confidence 234899999999999763 1 12233455558
Q ss_pred hhccCceEEEEe
Q 040129 179 EIVPGGMIIITN 190 (333)
Q Consensus 179 EL~~GG~mvl~~ 190 (333)
.++|||.++++.
T Consensus 122 ~~~pGG~~li~~ 133 (192)
T PF03848_consen 122 ATKPGGYNLIVT 133 (192)
T ss_dssp TEEEEEEEEEEE
T ss_pred hcCCcEEEEEEE
Confidence 899999988854
No 35
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.77 E-value=0.002 Score=61.13 Aligned_cols=160 Identities=17% Similarity=0.222 Sum_probs=92.3
Q ss_pred CcEEEEeecCCCCcccHHHHHH-------------HHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCcccc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQD-------------LIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIH 96 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~-------------ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~ 96 (333)
.--+|.|+||+-|..++.+... -.+.++++....+. ...+.|.+.|-. |+..
T Consensus 62 ~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl---~~~v~v~~~D~~--~~~~---------- 126 (273)
T PF02353_consen 62 PGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGL---EDRVEVRLQDYR--DLPG---------- 126 (273)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTS---SSTEEEEES-GG--G-------------
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCC---CCceEEEEeecc--ccCC----------
Confidence 3479999999999999998854 23444444444331 234666666532 1111
Q ss_pred ceeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhh
Q 040129 97 FFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNR 176 (333)
Q Consensus 97 ~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~R 176 (333)
+.|-++|--++.-+ + .+++..|++.=
T Consensus 127 ------------------~fD~IvSi~~~Ehv---g---------------------------------~~~~~~~f~~~ 152 (273)
T PF02353_consen 127 ------------------KFDRIVSIEMFEHV---G---------------------------------RKNYPAFFRKI 152 (273)
T ss_dssp ------------------S-SEEEEESEGGGT---C---------------------------------GGGHHHHHHHH
T ss_pred ------------------CCCEEEEEechhhc---C---------------------------------hhHHHHHHHHH
Confidence 47888877665543 1 15667778888
Q ss_pred hhhhccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCc-ccCCHHHHHHHHHhCCcEE
Q 040129 177 AKEIVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPI-YACPPGEFGAVVERNGNFR 255 (333)
Q Consensus 177 a~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~-y~ps~~E~~~~ie~~G~F~ 255 (333)
++=|+|||++++...+..+... .. +.-.+-+-+..+.+|- +.||.+|+...+++.| |+
T Consensus 153 ~~~LkpgG~~~lq~i~~~~~~~----------~~----------~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~-l~ 211 (273)
T PF02353_consen 153 SRLLKPGGRLVLQTITHRDPPY----------HA----------ERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAG-LE 211 (273)
T ss_dssp HHHSETTEEEEEEEEEE--HHH----------HH----------CTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT--E
T ss_pred HHhcCCCcEEEEEecccccccc----------hh----------hcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCC-EE
Confidence 8999999999998766543210 00 0000001122233454 6689999999999888 99
Q ss_pred EeEEEEeCCCCCCcCCCChhHHHHHHHHHhhhhhh
Q 040129 256 IEVMGLTNPSPWLKGRINMPEYIKHVRAATESMFN 290 (333)
Q Consensus 256 I~~le~~~p~~~~~~~~~~~~~a~~iRa~~e~~l~ 290 (333)
|...+.+- ..++.++|.|.+.+.+
T Consensus 212 v~~~~~~~-----------~hY~~Tl~~W~~~f~~ 235 (273)
T PF02353_consen 212 VEDVENLG-----------RHYARTLRAWRENFDA 235 (273)
T ss_dssp EEEEEE-H-----------HHHHHHHHHHHHHHHH
T ss_pred EEEEEEcC-----------cCHHHHHHHHHHHHHH
Confidence 98887663 4566666666666655
No 36
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=97.71 E-value=0.00076 Score=64.53 Aligned_cols=150 Identities=14% Similarity=0.187 Sum_probs=85.0
Q ss_pred CcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhh-cCCccc-cceeeccCcccc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFT-SLPQEI-HFFVAGVPGSFH 107 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~-~l~~~~-~~f~~~vpgSFy 107 (333)
+.-+|+|+||++|..++.+.+. .|..++..-|+|. --...+ .+.... .==+..++|+|+
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~-----------------~p~~~~~~~D~~~--~~~~a~~~~~~~gl~~rv~~~~~d~~ 209 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKH-----------------FPELDSTILNLPG--AIDLVNENAAEKGVADRMRGIAVDIY 209 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHH-----------------CCCCEEEEEecHH--HHHHHHHHHHhCCccceEEEEecCcc
Confidence 3469999999999877655432 2456777778863 212211 111110 001456788999
Q ss_pred cccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEE
Q 040129 108 KRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMII 187 (333)
Q Consensus 108 ~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mv 187 (333)
..-+|. .|+++.+..+|-. ++ .+-..+|+.=.+-|+|||+++
T Consensus 210 ~~~~~~--~D~v~~~~~lh~~---~~---------------------------------~~~~~il~~~~~~L~pgG~l~ 251 (306)
T TIGR02716 210 KESYPE--ADAVLFCRILYSA---NE---------------------------------QLSTIMCKKAFDAMRSGGRLL 251 (306)
T ss_pred CCCCCC--CCEEEeEhhhhcC---Ch---------------------------------HHHHHHHHHHHHhcCCCCEEE
Confidence 766776 4999888888832 11 111233555558899999998
Q ss_pred EE-ecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEE
Q 040129 188 IT-NPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRI 256 (333)
Q Consensus 188 l~-~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I 256 (333)
+. +.-.+...+ .+..+...+..+ |.. + .+.-+++.+|+.+++++.| |+.
T Consensus 252 i~d~~~~~~~~~--------~~~~~~~~~~~~---~~~-------~-~~~~~~~~~e~~~ll~~aG-f~~ 301 (306)
T TIGR02716 252 ILDMVIDDPENP--------NFDYLSHYILGA---GMP-------F-SVLGFKEQARYKEILESLG-YKD 301 (306)
T ss_pred EEEeccCCCCCc--------hhhHHHHHHHHc---ccc-------c-ccccCCCHHHHHHHHHHcC-CCe
Confidence 87 322211111 112222222211 221 0 1123556899999999999 863
No 37
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=97.71 E-value=0.00033 Score=59.89 Aligned_cols=95 Identities=21% Similarity=0.385 Sum_probs=58.0
Q ss_pred CcEEEEeecCCCCcccHHHHH---------------HHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCcc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQ---------------DLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQE 94 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~---------------~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~ 94 (333)
+..+|+|+||++|..+..+.. ..|+..++.....+ .+.++++..|.-.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~----~~ni~~~~~d~~~------------- 65 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG----LDNIEFIQGDIED------------- 65 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT----STTEEEEESBTTC-------------
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc----ccccceEEeehhc-------------
Confidence 458999999999999988773 23333333322221 1134444443311
Q ss_pred ccceeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHH
Q 040129 95 IHFFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLN 174 (333)
Q Consensus 95 ~~~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~ 174 (333)
..+.++ +.+|++++..++||+.. ...+|+
T Consensus 66 ------------l~~~~~-~~~D~I~~~~~l~~~~~--------------------------------------~~~~l~ 94 (152)
T PF13847_consen 66 ------------LPQELE-EKFDIIISNGVLHHFPD--------------------------------------PEKVLK 94 (152)
T ss_dssp ------------GCGCSS-TTEEEEEEESTGGGTSH--------------------------------------HHHHHH
T ss_pred ------------cccccC-CCeeEEEEcCchhhccC--------------------------------------HHHHHH
Confidence 111134 78999999999998543 222344
Q ss_pred hhhhhhccCceEEEEecC
Q 040129 175 NRAKEIVPGGMIIITNPS 192 (333)
Q Consensus 175 ~Ra~EL~~GG~mvl~~~g 192 (333)
.=.+-|++||.+++....
T Consensus 95 ~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 95 NIIRLLKPGGILIISDPN 112 (152)
T ss_dssp HHHHHEEEEEEEEEEEEE
T ss_pred HHHHHcCCCcEEEEEECC
Confidence 445789999999998755
No 38
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.70 E-value=0.0002 Score=63.96 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=24.1
Q ss_pred cccCCHHHHHHHHHhCCcEEEeEEEEeC
Q 040129 236 IYACPPGEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 236 ~y~ps~~E~~~~ie~~G~F~I~~le~~~ 263 (333)
..++|.+|+.+++++.| |+|...+.++
T Consensus 143 ~~~~s~~~~~~ll~~~G-f~v~~~~~~~ 169 (194)
T TIGR02081 143 IHFCTIADFEDLCGELN-LRILDRAAFD 169 (194)
T ss_pred cccCcHHHHHHHHHHCC-CEEEEEEEec
Confidence 45789999999999999 9999988875
No 39
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.70 E-value=0.0014 Score=59.41 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=24.8
Q ss_pred CcCcccCCHHHHHHHHHhCCcEEEeEEEEeC
Q 040129 233 NLPIYACPPGEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 233 n~P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 263 (333)
..+.+..+.+|+...++..| |++...+.+.
T Consensus 187 ~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~ 216 (230)
T PRK07580 187 TTRIYPHREKGIRRALAAAG-FKVVRTERIS 216 (230)
T ss_pred CCCccccCHHHHHHHHHHCC-CceEeeeecc
Confidence 34567789999999999999 9988887664
No 40
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=97.67 E-value=0.00052 Score=64.39 Aligned_cols=91 Identities=12% Similarity=0.157 Sum_probs=53.0
Q ss_pred cCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEE
Q 040129 110 LFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIIT 189 (333)
Q Consensus 110 lfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~ 189 (333)
-+|++++|+++|+.++||....+ ..|+.=.+-|+|||++++.
T Consensus 141 ~~~~~~fD~Vi~~~v~~~~~d~~--------------------------------------~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 141 PVADNSVDVIISNCVINLSPDKE--------------------------------------RVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred CCCCCceeEEEEcCcccCCCCHH--------------------------------------HHHHHHHHHcCCCcEEEEE
Confidence 36788999999999999842211 1122233679999999987
Q ss_pred ecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEe
Q 040129 190 NPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLT 262 (333)
Q Consensus 190 ~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~ 262 (333)
-....... .+.+...+. +. .|. .....+.+|+..++++.| |....+...
T Consensus 183 ~~~~~~~~----------~~~~~~~~~-~~-~~~-----------~~~~~~~~e~~~~l~~aG-f~~v~i~~~ 231 (272)
T PRK11873 183 DVVLRGEL----------PEEIRNDAE-LY-AGC-----------VAGALQEEEYLAMLAEAG-FVDITIQPK 231 (272)
T ss_pred EeeccCCC----------CHHHHHhHH-HH-hcc-----------ccCCCCHHHHHHHHHHCC-CCceEEEec
Confidence 43221111 011121111 11 011 112457899999999999 876665543
No 41
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.65 E-value=0.0014 Score=59.55 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=25.4
Q ss_pred CcCcccCCHHHHHHHHHhCCcEEEeEEEEeC
Q 040129 233 NLPIYACPPGEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 233 n~P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 263 (333)
..++++++.+|+..++++.| |++...+...
T Consensus 179 ~~~~~~~~~~~~~~~l~~~G-f~v~~~~~~~ 208 (219)
T TIGR02021 179 ATSAYLHPMTDLERALGELG-WKIVREGLVS 208 (219)
T ss_pred ccceEEecHHHHHHHHHHcC-ceeeeeeccc
Confidence 35678899999999999999 9998887553
No 42
>PRK06922 hypothetical protein; Provisional
Probab=97.61 E-value=0.00017 Score=75.58 Aligned_cols=54 Identities=26% Similarity=0.291 Sum_probs=40.2
Q ss_pred cCCCCceeEEEeccccccc-cCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEE
Q 040129 110 LFPEKFLHLVHVSYALHWL-SKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIII 188 (333)
Q Consensus 110 lfP~~Sv~~~~Ss~alHWL-S~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl 188 (333)
.||++++|++++++++||+ +.+|..-. .++ .+|...+|+.=.+-|+|||++++
T Consensus 482 ~fedeSFDvVVsn~vLH~L~syIp~~g~-----~f~---------------------~edl~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 482 SFEKESVDTIVYSSILHELFSYIEYEGK-----KFN---------------------HEVIKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred ccCCCCEEEEEEchHHHhhhhhcccccc-----ccc---------------------HHHHHHHHHHHHHHcCCCcEEEE
Confidence 4788999999999999964 55553210 001 25777788888899999999999
Q ss_pred E
Q 040129 189 T 189 (333)
Q Consensus 189 ~ 189 (333)
.
T Consensus 536 ~ 536 (677)
T PRK06922 536 R 536 (677)
T ss_pred E
Confidence 6
No 43
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.56 E-value=0.011 Score=56.33 Aligned_cols=181 Identities=15% Similarity=0.205 Sum_probs=106.5
Q ss_pred CCcEEEEeecCCCCcccHHHHHHH-------------HHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDL-------------IEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEI 95 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~i-------------i~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~ 95 (333)
..-.++.|+||+-|..++.++..- .+..+++..+.+. .-.++|.+-|.+ ||+.-
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl---~~~v~v~l~d~r--d~~e~-------- 137 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL---EDNVEVRLQDYR--DFEEP-------- 137 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC---CcccEEEecccc--ccccc--------
Confidence 345899999999999999988553 2333443444331 235778887765 33222
Q ss_pred cceeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHh
Q 040129 96 HFFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNN 175 (333)
Q Consensus 96 ~~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~ 175 (333)
+|=+.|-=.++-+ ..+.+..|++.
T Consensus 138 --------------------fDrIvSvgmfEhv------------------------------------g~~~~~~ff~~ 161 (283)
T COG2230 138 --------------------FDRIVSVGMFEHV------------------------------------GKENYDDFFKK 161 (283)
T ss_pred --------------------cceeeehhhHHHh------------------------------------CcccHHHHHHH
Confidence 3333443333332 22456677888
Q ss_pred hhhhhccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcC-cccCCHHHHHHHHHhCCcE
Q 040129 176 RAKEIVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLP-IYACPPGEFGAVVERNGNF 254 (333)
Q Consensus 176 Ra~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P-~y~ps~~E~~~~ie~~G~F 254 (333)
=.+-|+|||+|++-..+.++.... . . ..-++.+.+| -+.||..++....++.| |
T Consensus 162 ~~~~L~~~G~~llh~I~~~~~~~~-~----------~-------------~~~i~~yiFPgG~lPs~~~i~~~~~~~~-~ 216 (283)
T COG2230 162 VYALLKPGGRMLLHSITGPDQEFR-R----------F-------------PDFIDKYIFPGGELPSISEILELASEAG-F 216 (283)
T ss_pred HHhhcCCCceEEEEEecCCCcccc-c----------c-------------hHHHHHhCCCCCcCCCHHHHHHHHHhcC-c
Confidence 889999999999998776653310 0 0 0112223344 36689999999999999 8
Q ss_pred EEeEEEEeCCCCCCcCCCChhHHHHHHHHHhhhhhhhhcC---hHHHHHHHHHHHHHHHHhhhh
Q 040129 255 RIEVMGLTNPSPWLKGRINMPEYIKHVRAATESMFNKHFS---YEVTEEMFRQLLERLEEINDK 315 (333)
Q Consensus 255 ~I~~le~~~p~~~~~~~~~~~~~a~~iRa~~e~~l~~hfg---eei~delf~r~~~~l~~~~~~ 315 (333)
.|...+.+- ..++.+++.+.+.+-. +.. ...-++++.+|...+...-..
T Consensus 217 ~v~~~~~~~-----------~hYa~Tl~~W~~~f~~-~~~~a~~~~~e~~~r~w~~yl~~~~~~ 268 (283)
T COG2230 217 VVLDVESLR-----------PHYARTLRLWRERFEA-NRDEAIALYDERFYRMWELYLAACAAA 268 (283)
T ss_pred EEehHhhhc-----------HHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 886666553 2355555555555544 222 122233444455555554444
No 44
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.50 E-value=0.002 Score=58.19 Aligned_cols=72 Identities=22% Similarity=0.292 Sum_probs=44.9
Q ss_pred ccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEE
Q 040129 109 RLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIII 188 (333)
Q Consensus 109 rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl 188 (333)
+.+|++++|.++++++.+|.... .. +.. .+...||+.=++-|+|||.+++
T Consensus 105 ~~~~~~~~D~V~~~~~~p~~~~~-~~----------~~~-------------------~~~~~~l~~i~~~LkpgG~l~i 154 (202)
T PRK00121 105 DMFPDGSLDRIYLNFPDPWPKKR-HH----------KRR-------------------LVQPEFLALYARKLKPGGEIHF 154 (202)
T ss_pred HHcCccccceEEEECCCCCCCcc-cc----------ccc-------------------cCCHHHHHHHHHHcCCCCEEEE
Confidence 44778899999999888885431 11 000 1234456666688999999998
Q ss_pred EecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCC
Q 040129 189 TNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLS 225 (333)
Q Consensus 189 ~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~ 225 (333)
.... .+.+...+..|.+.|+-.
T Consensus 155 ~~~~---------------~~~~~~~~~~~~~~g~~~ 176 (202)
T PRK00121 155 ATDW---------------EGYAEYMLEVLSAEGGFL 176 (202)
T ss_pred EcCC---------------HHHHHHHHHHHHhCcccc
Confidence 7622 133445555666667543
No 45
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.39 E-value=0.00052 Score=69.57 Aligned_cols=43 Identities=23% Similarity=0.425 Sum_probs=34.7
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEE
Q 040129 111 FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIIT 189 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~ 189 (333)
+|++++|+++|+.++||++. .++..+|+.-.+-|+|||+|++.
T Consensus 99 ~~~~~fD~I~~~~~l~~l~~------------------------------------~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 99 ISDGSVDLIFSNWLLMYLSD------------------------------------KEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred CCCCCEEEEehhhhHHhCCH------------------------------------HHHHHHHHHHHHhcCCCeEEEEE
Confidence 68899999999999999743 23455677777889999999885
No 46
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.35 E-value=0.0015 Score=61.61 Aligned_cols=43 Identities=23% Similarity=0.464 Sum_probs=31.5
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEE
Q 040129 111 FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIIT 189 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~ 189 (333)
+|.+++|+++|.++|||++. | +....|+.=++-|+|||.|++.
T Consensus 199 ~~~~~fD~I~crnvl~yf~~-~-----------------------------------~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 199 PPLGDFDLIFCRNVLIYFDE-P-----------------------------------TQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred CccCCCCEEEechhHHhCCH-H-----------------------------------HHHHHHHHHHHHhCCCeEEEEE
Confidence 46889999999999999753 1 1122344445889999999974
No 47
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.32 E-value=0.00046 Score=54.40 Aligned_cols=76 Identities=21% Similarity=0.148 Sum_probs=32.1
Q ss_pred EeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCcc---ccceeeccCcccccccC
Q 040129 35 ADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQE---IHFFVAGVPGSFHKRLF 111 (333)
Q Consensus 35 aD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~---~~~f~~~vpgSFy~rlf 111 (333)
.|+||++|..+..++... |..+++..|.-..=-...=+.+... ..-.+............
T Consensus 1 LdiGcG~G~~~~~l~~~~-----------------~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-----------------PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDP 63 (99)
T ss_dssp -EESTTTS-TTTTHHHHC------------------EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC
T ss_pred CEeCccChHHHHHHHHhC-----------------CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhccc
Confidence 499999999997776532 3455666665443221110111100 01122222222222222
Q ss_pred CCCceeEEEeccccccc
Q 040129 112 PEKFLHLVHVSYALHWL 128 (333)
Q Consensus 112 P~~Sv~~~~Ss~alHWL 128 (333)
+ +++|+++++.+|||+
T Consensus 64 ~-~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 64 P-ESFDLVVASNVLHHL 79 (99)
T ss_dssp -----SEEEEE-TTS--
T ss_pred c-cccceehhhhhHhhh
Confidence 2 899999999999998
No 48
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.30 E-value=0.00081 Score=59.87 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=16.2
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
..+|+|+||++|..++.+.
T Consensus 43 ~~~vLDiGcGtG~~s~~la 61 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLA 61 (181)
T ss_pred CCeEEEecCCCCccHHHHH
Confidence 4689999999999887754
No 49
>PRK05785 hypothetical protein; Provisional
Probab=97.24 E-value=0.0022 Score=58.95 Aligned_cols=74 Identities=20% Similarity=0.239 Sum_probs=43.4
Q ss_pred cEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCccccccc
Q 040129 31 TIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKRL 110 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~rl 110 (333)
.-+|+|+||++|.++..+.... ..+|+--|+ +-+.=.+.+. +.-+ +-+++-.-=
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~------------------~~~v~gvD~-S~~Ml~~a~~----~~~~---~~~d~~~lp 105 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF------------------KYYVVALDY-AENMLKMNLV----ADDK---VVGSFEALP 105 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc------------------CCEEEEECC-CHHHHHHHHh----ccce---EEechhhCC
Confidence 4699999999998886654321 012444442 1111111111 0011 224444445
Q ss_pred CCCCceeEEEeccccccccC
Q 040129 111 FPEKFLHLVHVSYALHWLSK 130 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alHWLS~ 130 (333)
||++|+|.++|+++|||+..
T Consensus 106 ~~d~sfD~v~~~~~l~~~~d 125 (226)
T PRK05785 106 FRDKSFDVVMSSFALHASDN 125 (226)
T ss_pred CCCCCEEEEEecChhhccCC
Confidence 78999999999999999654
No 50
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.21 E-value=0.012 Score=53.63 Aligned_cols=94 Identities=16% Similarity=0.208 Sum_probs=55.4
Q ss_pred CCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEec
Q 040129 112 PEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITNP 191 (333)
Q Consensus 112 P~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~ 191 (333)
+.+++|+++++..+++... ...+|+.-.+-|+|||+|++...
T Consensus 111 ~~~~fD~Ii~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 111 HPGQFDVVTCMEMLEHVPD--------------------------------------PASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred cCCCccEEEEhhHhhccCC--------------------------------------HHHHHHHHHHHcCCCcEEEEEec
Confidence 4578999999988887422 11235555677899999998876
Q ss_pred CCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEE
Q 040129 192 SIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMG 260 (333)
Q Consensus 192 gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le 260 (333)
++... ........ ...+..+. .. .......+.+.+|+.+++++.| |++....
T Consensus 153 ~~~~~--------~~~~~~~~---~~~~~~~~-~~----~~~~~~~~~~~~~~~~~l~~~G-f~~v~~~ 204 (233)
T PRK05134 153 NRNLK--------SYLLAIVG---AEYVLRML-PK----GTHDYKKFIKPSELAAWLRQAG-LEVQDIT 204 (233)
T ss_pred CCChH--------HHHHHHhh---HHHHhhhc-Cc----ccCchhhcCCHHHHHHHHHHCC-CeEeeee
Confidence 53211 01111111 11111111 10 0111224678999999999999 9987776
No 51
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.19 E-value=0.0039 Score=57.93 Aligned_cols=181 Identities=18% Similarity=0.230 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHH
Q 040129 7 TKDHIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNT 86 (333)
Q Consensus 7 ~~~~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~ 86 (333)
-+.+|.....+++... ...+.+|..+||+.|...+.+++. .+++.+.||.+|-..|-=+-
T Consensus 53 dR~wL~~Efpel~~~~-----~~~~~~ilEvGCGvGNtvfPll~~---------------~~n~~l~v~acDfsp~Ai~~ 112 (264)
T KOG2361|consen 53 DRNWLLREFPELLPVD-----EKSAETILEVGCGVGNTVFPLLKT---------------SPNNRLKVYACDFSPRAIEL 112 (264)
T ss_pred hhHHHHHhhHHhhCcc-----ccChhhheeeccCCCcccchhhhc---------------CCCCCeEEEEcCCChHHHHH
Confidence 4567777777777554 223349999999998777666631 23456889988876654443
Q ss_pred HhhcCC-ccccc--eeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHH
Q 040129 87 LFTSLP-QEIHF--FVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYAN 163 (333)
Q Consensus 87 lF~~l~-~~~~~--f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~ 163 (333)
+=++-. ....+ |+.=.-++=-..-++.+|+|++..-+. ||-+|++-.
T Consensus 113 vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv---LSAi~pek~--------------------------- 162 (264)
T KOG2361|consen 113 VKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV---LSAIHPEKM--------------------------- 162 (264)
T ss_pred HHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE---EeccChHHH---------------------------
Confidence 322211 11122 222221211444455666666554443 234443311
Q ss_pred HHHHhHHHHHHhhhhhhccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhh-hhcCCcCcccCCHH
Q 040129 164 QFAKDLERFLNNRAKEIVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQ-VDSFNLPIYACPPG 242 (333)
Q Consensus 164 Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~-~d~fn~P~y~ps~~ 242 (333)
.+=++.=.+=|+|||.+++-=-|+.+-. .+. -+ ++-.|++.. +..=--+.|+-+.+
T Consensus 163 ------~~a~~nl~~llKPGG~llfrDYg~~Dla------------qlR----F~-~~~~i~~nfYVRgDGT~~YfF~~e 219 (264)
T KOG2361|consen 163 ------QSVIKNLRTLLKPGGSLLFRDYGRYDLA------------QLR----FK-KGQCISENFYVRGDGTRAYFFTEE 219 (264)
T ss_pred ------HHHHHHHHHHhCCCcEEEEeecccchHH------------HHh----cc-CCceeecceEEccCCceeeeccHH
Confidence 1113333477899999999877765421 111 00 222222111 11123578999999
Q ss_pred HHHHHHHhCCcEEEeEEEE
Q 040129 243 EFGAVVERNGNFRIEVMGL 261 (333)
Q Consensus 243 E~~~~ie~~G~F~I~~le~ 261 (333)
|+++++.++| |..+++++
T Consensus 220 eL~~~f~~ag-f~~~~~~~ 237 (264)
T KOG2361|consen 220 ELDELFTKAG-FEEVQLEV 237 (264)
T ss_pred HHHHHHHhcc-cchhcccc
Confidence 9999999999 87776664
No 52
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.19 E-value=0.00024 Score=65.53 Aligned_cols=136 Identities=21% Similarity=0.394 Sum_probs=89.1
Q ss_pred cEEEEeecCCCCcccHHHHHHHHHHH---------HHHhhhcCCCCCCCcce--EEecCCCCCchHHHhhcCCcccccee
Q 040129 31 TIRLADCGCAVGPNTFNAMQDLIEIV---------KHKYKSQCPNSQNPEFH--VSFNDQSSNDFNTLFTSLPQEIHFFV 99 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~ii~~i---------~~~~~~~~~~~~~~~~~--v~~nDlP~NDFn~lF~~l~~~~~~f~ 99 (333)
.-+.+|+|||-|.-+-.+...-|+.+ -+.|+. ++.|++. -+.-|-..-|
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~----~qdp~i~~~~~v~DEE~Ld---------------- 132 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRD----AQDPSIETSYFVGDEEFLD---------------- 132 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhc----cCCCceEEEEEecchhccc----------------
Confidence 45789999999998877765444433 112222 3344433 2333433333
Q ss_pred eccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhh
Q 040129 100 AGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKE 179 (333)
Q Consensus 100 ~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~E 179 (333)
|-+||+|++.||-++||....|.... ++ ..-
T Consensus 133 -----------f~ens~DLiisSlslHW~NdLPg~m~----------~c----------------------------k~~ 163 (325)
T KOG2940|consen 133 -----------FKENSVDLIISSLSLHWTNDLPGSMI----------QC----------------------------KLA 163 (325)
T ss_pred -----------ccccchhhhhhhhhhhhhccCchHHH----------HH----------------------------HHh
Confidence 56789999999999999999996432 11 167
Q ss_pred hccCceEEEEecCCCCCCCCccchhhHHHHH-HHHHHHHHHhccCCCHhhhhcCCcCcccC--CHHHHHHHHHhCCcEEE
Q 040129 180 IVPGGMIIITNPSIPDGMPFSEIANGLMYNC-MGTILYDMVKVGLLSEAQVDSFNLPIYAC--PPGEFGAVVERNGNFRI 256 (333)
Q Consensus 180 L~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~-l~~~l~~mv~eG~i~~~~~d~fn~P~y~p--s~~E~~~~ie~~G~F~I 256 (333)
|||.|.++..++|-+. ++++ .+-.|.+|..+|-|+ |...| ...++-.++..+| |..
T Consensus 164 lKPDg~FiasmlggdT-----------LyELR~slqLAelER~GGiS---------phiSPf~qvrDiG~LL~rAG-F~m 222 (325)
T KOG2940|consen 164 LKPDGLFIASMLGGDT-----------LYELRCSLQLAELEREGGIS---------PHISPFTQVRDIGNLLTRAG-FSM 222 (325)
T ss_pred cCCCccchhHHhcccc-----------HHHHHHHhhHHHHHhccCCC---------CCcChhhhhhhhhhHHhhcC-ccc
Confidence 9999999999988432 3332 345577888998775 33333 3567778888899 753
No 53
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.18 E-value=0.0021 Score=60.33 Aligned_cols=145 Identities=21% Similarity=0.283 Sum_probs=93.5
Q ss_pred EEEEeecCCCCcccHHHH------------HHHHHHHHHHhhhcCCCCCCCcc-----eEEecCCCCCchHHHhhcCCcc
Q 040129 32 IRLADCGCAVGPNTFNAM------------QDLIEIVKHKYKSQCPNSQNPEF-----HVSFNDQSSNDFNTLFTSLPQE 94 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~------------~~ii~~i~~~~~~~~~~~~~~~~-----~v~~nDlP~NDFn~lF~~l~~~ 94 (333)
.+|.|.||+.|--|..+. ++.|++-+++ .++. |+.- .+-+.|.-.+|+..-
T Consensus 91 ~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h-~~~d----P~~~~~~~y~l~~~~~~~E~~~~~------- 158 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEH-KKMD----PVLEGAIAYRLEYEDTDVEGLTGK------- 158 (282)
T ss_pred ceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHh-hhcC----chhccccceeeehhhcchhhcccc-------
Confidence 779999999999998876 6777777776 4432 2322 233555554444322
Q ss_pred ccceeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHH
Q 040129 95 IHFFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLN 174 (333)
Q Consensus 95 ~~~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~ 174 (333)
+|.|.|+-.+|- + +|...||+
T Consensus 159 ---------------------fDaVvcsevleH---------------------------------V-----~dp~~~l~ 179 (282)
T KOG1270|consen 159 ---------------------FDAVVCSEVLEH---------------------------------V-----KDPQEFLN 179 (282)
T ss_pred ---------------------cceeeeHHHHHH---------------------------------H-----hCHHHHHH
Confidence 666666655543 1 57888999
Q ss_pred hhhhhhccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcE
Q 040129 175 NRAKEIVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNF 254 (333)
Q Consensus 175 ~Ra~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F 254 (333)
+=++-|+|||+++++-.-|.-... .+.+ .+.+.....|=.|. -.+-=|++++|+..+++.++ +
T Consensus 180 ~l~~~lkP~G~lfittinrt~lS~-----~~~i--~~~E~vl~ivp~Gt---------h~~ekfi~p~e~~~~l~~~~-~ 242 (282)
T KOG1270|consen 180 CLSALLKPNGRLFITTINRTILSF-----AGTI--FLAEIVLRIVPKGT---------HTWEKFINPEELTSILNANG-A 242 (282)
T ss_pred HHHHHhCCCCceEeeehhhhHHHh-----hccc--cHHHHHHHhcCCCC---------cCHHHcCCHHHHHHHHHhcC-c
Confidence 999999999999999877642211 1111 12222222555553 34445788999999999997 7
Q ss_pred EEeEEE--EeCC
Q 040129 255 RIEVMG--LTNP 264 (333)
Q Consensus 255 ~I~~le--~~~p 264 (333)
.++.+- .+.|
T Consensus 243 ~v~~v~G~~y~p 254 (282)
T KOG1270|consen 243 QVNDVVGEVYNP 254 (282)
T ss_pred chhhhhcccccc
Confidence 776664 4444
No 54
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.18 E-value=0.0019 Score=58.35 Aligned_cols=93 Identities=20% Similarity=0.366 Sum_probs=66.9
Q ss_pred CCcEEEEeecCCCCcccHHHH------------HHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCcccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAM------------QDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIH 96 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~ 96 (333)
+.--++.|+|||.|..|..+. ...|+.-++++.. .|.+++..-|+|.
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~------~~~V~~~~~dvp~--------------- 100 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG------LPHVEWIQADVPE--------------- 100 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-------SSEEEEES-TTT---------------
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC------CCCeEEEECcCCC---------------
Confidence 556789999999999998876 6667777776654 4678888888764
Q ss_pred ceeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhh
Q 040129 97 FFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNR 176 (333)
Q Consensus 97 ~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~R 176 (333)
..|..++|+++.+-.+++|+.. .|+..++..=
T Consensus 101 -------------~~P~~~FDLIV~SEVlYYL~~~-----------------------------------~~L~~~l~~l 132 (201)
T PF05401_consen 101 -------------FWPEGRFDLIVLSEVLYYLDDA-----------------------------------EDLRAALDRL 132 (201)
T ss_dssp ----------------SS-EEEEEEES-GGGSSSH-----------------------------------HHHHHHHHHH
T ss_pred -------------CCCCCCeeEEEEehHhHcCCCH-----------------------------------HHHHHHHHHH
Confidence 2488889999999999998651 3566667777
Q ss_pred hhhhccCceEEEEe
Q 040129 177 AKEIVPGGMIIITN 190 (333)
Q Consensus 177 a~EL~~GG~mvl~~ 190 (333)
.+-|.|||.||+.-
T Consensus 133 ~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 133 VAALAPGGHLVFGH 146 (201)
T ss_dssp HHTEEEEEEEEEEE
T ss_pred HHHhCCCCEEEEEE
Confidence 78999999999964
No 55
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.16 E-value=0.0021 Score=50.98 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=14.1
Q ss_pred EEeecCCCCcccHHHHHH
Q 040129 34 LADCGCAVGPNTFNAMQD 51 (333)
Q Consensus 34 IaD~GCs~G~Ns~~~~~~ 51 (333)
|+|+||++|.++..+...
T Consensus 1 ILDlgcG~G~~~~~l~~~ 18 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARR 18 (101)
T ss_dssp -EEET-TTSHHHHHHHHH
T ss_pred CEEeecCCcHHHHHHHHH
Confidence 789999999999888754
No 56
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.09 E-value=0.0044 Score=55.99 Aligned_cols=93 Identities=15% Similarity=0.281 Sum_probs=53.7
Q ss_pred CCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEecC
Q 040129 113 EKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITNPS 192 (333)
Q Consensus 113 ~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g 192 (333)
++++|+++++.++|+... ...+|+.-.+-|+|||.+++....
T Consensus 110 ~~~~D~i~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 110 AKSFDVVTCMEVLEHVPD--------------------------------------PQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred CCCccEEEehhHHHhCCC--------------------------------------HHHHHHHHHHhcCCCcEEEEEecC
Confidence 368999999998888432 123455556779999999887643
Q ss_pred CCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEE
Q 040129 193 IPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMG 260 (333)
Q Consensus 193 r~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le 260 (333)
+.. .......+. .++. .+.++. .......+.+.+++.+++++.| |+|..+.
T Consensus 152 ~~~--------~~~~~~~~~---~~~~-~~~~~~----~~~~~~~~~~~~~l~~~l~~~G-~~i~~~~ 202 (224)
T TIGR01983 152 RTP--------KSYLLAIVG---AEYI-LRIVPK----GTHDWEKFIKPSELTSWLESAG-LRVKDVK 202 (224)
T ss_pred CCc--------hHHHHHHHh---hhhh-hhcCCC----CcCChhhcCCHHHHHHHHHHcC-Ceeeeee
Confidence 221 011111111 0111 111110 0011113458899999999999 9998777
No 57
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.09 E-value=0.0028 Score=60.78 Aligned_cols=129 Identities=15% Similarity=0.131 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHh
Q 040129 9 DHIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLF 88 (333)
Q Consensus 9 ~~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF 88 (333)
.+|++...++.... +...+|+|+||++|.-|..+++.... ..+++--|+...==....
T Consensus 48 ~il~~~~~~ia~~~------~~~~~iLELGcGtG~~t~~Ll~~l~~----------------~~~~~~iDiS~~mL~~a~ 105 (301)
T TIGR03438 48 AILERHADEIAAAT------GAGCELVELGSGSSRKTRLLLDALRQ----------------PARYVPIDISADALKESA 105 (301)
T ss_pred HHHHHHHHHHHHhh------CCCCeEEecCCCcchhHHHHHHhhcc----------------CCeEEEEECCHHHHHHHH
Confidence 46666666555432 23468999999999999888765321 122333333221000011
Q ss_pred hcCCc-cccceeeccCccccccc-CCC----CceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHH
Q 040129 89 TSLPQ-EIHFFVAGVPGSFHKRL-FPE----KFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYA 162 (333)
Q Consensus 89 ~~l~~-~~~~f~~~vpgSFy~rl-fP~----~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~ 162 (333)
+.+.. ...+=+.++-|.|...+ +|. +...++++.+++|+++.
T Consensus 106 ~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~-------------------------------- 153 (301)
T TIGR03438 106 AALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTP-------------------------------- 153 (301)
T ss_pred HHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCH--------------------------------
Confidence 11110 00111223334444321 222 24567777778888642
Q ss_pred HHHHHhHHHHHHhhhhhhccCceEEEEecCCCC
Q 040129 163 NQFAKDLERFLNNRAKEIVPGGMIIITNPSIPD 195 (333)
Q Consensus 163 ~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~gr~~ 195 (333)
.|...||+.=++-|+|||+|++.+-...+
T Consensus 154 ----~e~~~~L~~i~~~L~pgG~~lig~d~~~~ 182 (301)
T TIGR03438 154 ----EEAVAFLRRIRQLLGPGGGLLIGVDLVKD 182 (301)
T ss_pred ----HHHHHHHHHHHHhcCCCCEEEEeccCCCC
Confidence 34456677777889999999988755443
No 58
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.05 E-value=0.0037 Score=56.83 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=62.2
Q ss_pred cEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCcccccc-
Q 040129 31 TIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKR- 109 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~r- 109 (333)
.-+|+|+||++|.-|..+++. . .+.-+|+--|+-. .+ .++ + +..+-|++...
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~--------~--------~~~~~V~aVDi~~--~~----~~~---~--v~~i~~D~~~~~ 104 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQ--------I--------GDKGRVIACDILP--MD----PIV---G--VDFLQGDFRDEL 104 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHH--------c--------CCCceEEEEeccc--cc----CCC---C--cEEEecCCCChH
Confidence 358999999999977665532 1 1123455555522 11 111 1 12233445442
Q ss_pred -------cCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhcc
Q 040129 110 -------LFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVP 182 (333)
Q Consensus 110 -------lfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~ 182 (333)
-++.+++|+++|+.+.||... |. .| .. .+ .......|+.=.+-|+|
T Consensus 105 ~~~~i~~~~~~~~~D~V~S~~~~~~~g~-~~--~d-------------------~~----~~-~~~~~~~L~~~~~~Lkp 157 (209)
T PRK11188 105 VLKALLERVGDSKVQVVMSDMAPNMSGT-PA--VD-------------------IP----RA-MYLVELALDMCRDVLAP 157 (209)
T ss_pred HHHHHHHHhCCCCCCEEecCCCCccCCC-hH--HH-------------------HH----HH-HHHHHHHHHHHHHHcCC
Confidence 257789999999999999331 11 11 00 00 01134567777789999
Q ss_pred CceEEEEecC
Q 040129 183 GGMIIITNPS 192 (333)
Q Consensus 183 GG~mvl~~~g 192 (333)
||.+++....
T Consensus 158 GG~~vi~~~~ 167 (209)
T PRK11188 158 GGSFVVKVFQ 167 (209)
T ss_pred CCEEEEEEec
Confidence 9999996543
No 59
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.04 E-value=0.031 Score=54.17 Aligned_cols=27 Identities=11% Similarity=0.350 Sum_probs=23.2
Q ss_pred cccCCHHHHHHHHHhCCcEEEeEEEEeC
Q 040129 236 IYACPPGEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 236 ~y~ps~~E~~~~ie~~G~F~I~~le~~~ 263 (333)
.|+.+.+|++.++++.| |+|...+...
T Consensus 275 ~y~~s~eel~~lL~~AG-f~v~~~~~~~ 301 (315)
T PLN02585 275 AYLHAEADVERALKKAG-WKVARREMTA 301 (315)
T ss_pred eeeCCHHHHHHHHHHCC-CEEEEEEEee
Confidence 46679999999999999 9998877664
No 60
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=97.00 E-value=0.0075 Score=56.60 Aligned_cols=169 Identities=17% Similarity=0.275 Sum_probs=93.7
Q ss_pred CCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCcc----ccceee----
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQE----IHFFVA---- 100 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~----~~~f~~---- 100 (333)
...+++.|.+|++|-.++.++..+-+ +.+ .-+-+|...|. |.=--.+... .+++..
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s----~~~-------~~~~~V~v~Di-----np~mL~vgkqRa~~~~l~~~~~~~ 162 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKS----QFG-------DRESKVTVLDI-----NPHMLAVGKQRAKKRPLKASSRVE 162 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhcc----ccC-------CCCceEEEEeC-----CHHHHHHHHHHHhhcCCCcCCceE
Confidence 45599999999999999988754322 111 12334555443 3221111110 112211
Q ss_pred ccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhh
Q 040129 101 GVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEI 180 (333)
Q Consensus 101 ~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL 180 (333)
-+.|.=-.==||++|.|...+++.+--...++. ...+|| +-|
T Consensus 163 w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k----------------------~l~EAY----------------RVL 204 (296)
T KOG1540|consen 163 WVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQK----------------------ALREAY----------------RVL 204 (296)
T ss_pred EEeCCcccCCCCCCcceeEEEecceecCCCHHH----------------------HHHHHH----------------Hhc
Confidence 122222223389999999999988875444333 234455 579
Q ss_pred ccCceEEEEecCCCCCCCCccchhhHHH---HHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEe
Q 040129 181 VPGGMIIITNPSIPDGMPFSEIANGLMY---NCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIE 257 (333)
Q Consensus 181 ~~GG~mvl~~~gr~~~~~~~~~~~~~~~---~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~ 257 (333)
||||++.|.-...-+..+.......+.+ -.+.+.+....+.+..= +.+.+ -+|+.+|+...||++| |...
T Consensus 205 KpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYL---veSI~---rfp~qe~f~~miedaG-F~~~ 277 (296)
T KOG1540|consen 205 KPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYL---VESIR---RFPPQEEFASMIEDAG-FSSV 277 (296)
T ss_pred CCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhH---Hhhhh---cCCCHHHHHHHHHHcC-Cccc
Confidence 9999999887666553332111111222 33444444444433211 12222 3688999999999999 8765
Q ss_pred E
Q 040129 258 V 258 (333)
Q Consensus 258 ~ 258 (333)
.
T Consensus 278 ~ 278 (296)
T KOG1540|consen 278 N 278 (296)
T ss_pred c
Confidence 4
No 61
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=96.97 E-value=0.021 Score=51.22 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=32.9
Q ss_pred cEEEEeecCCCCcccHHHH--------------HHHHHHHHHHhhhcCCCCCCCcceEEecCCC
Q 040129 31 TIRLADCGCAVGPNTFNAM--------------QDLIEIVKHKYKSQCPNSQNPEFHVSFNDQS 80 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~--------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP 80 (333)
.-++.|+||++|.-|+.++ ...++.+++.+.+.+ -+.++|.--|-|
T Consensus 35 g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg----~~n~~vv~g~Ap 94 (187)
T COG2242 35 GDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG----VDNLEVVEGDAP 94 (187)
T ss_pred CCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC----CCcEEEEeccch
Confidence 3499999999999999987 456777777776643 345555555444
No 62
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.84 E-value=0.0045 Score=46.81 Aligned_cols=100 Identities=23% Similarity=0.343 Sum_probs=55.5
Q ss_pred EEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcC--CccccceeeccCccccccc
Q 040129 33 RLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSL--PQEIHFFVAGVPGSFHKRL 110 (333)
Q Consensus 33 ~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l--~~~~~~f~~~vpgSFy~rl 110 (333)
+|+|+||+.|.++..+.. .+..+++..|+..+-....-+.. ....++-+ +-+.+....
T Consensus 1 ~ildig~G~G~~~~~~~~------------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 60 (107)
T cd02440 1 RVLDLGCGTGALALALAS------------------GPGARVTGVDISPVALELARKAAAALLADNVEV--LKGDAEELP 60 (107)
T ss_pred CeEEEcCCccHHHHHHhc------------------CCCCEEEEEeCCHHHHHHHHHHHhcccccceEE--EEcChhhhc
Confidence 589999999998766543 01234556665443332221100 00111111 112222222
Q ss_pred -CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEE
Q 040129 111 -FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIIT 189 (333)
Q Consensus 111 -fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~ 189 (333)
.+..+.|+++++..+|+. + .+...+++.-.+=+++||.+++.
T Consensus 61 ~~~~~~~d~i~~~~~~~~~---~----------------------------------~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 61 PEADESFDVIISDPPLHHL---V----------------------------------EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred cccCCceEEEEEccceeeh---h----------------------------------hHHHHHHHHHHHHcCCCCEEEEE
Confidence 356789999999998886 0 23344455555667999999876
No 63
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=96.77 E-value=0.0042 Score=58.46 Aligned_cols=76 Identities=24% Similarity=0.247 Sum_probs=39.5
Q ss_pred CcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCcccccc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKR 109 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~r 109 (333)
..-+|.|+||++|..+..+.... .. ....+|+-.|+-.+=-...-+..+. --|.. ++..+-
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~--------~~------~~~~~v~giD~s~~~l~~A~~~~~~--~~~~~---~d~~~l 145 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADAL--------PE------ITTMQLFGLDISKVAIKYAAKRYPQ--VTFCV---ASSHRL 145 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhc--------cc------ccCCeEEEECCCHHHHHHHHHhCCC--CeEEE---eecccC
Confidence 34679999999999876655321 10 0113466666633211111111111 01211 233333
Q ss_pred cCCCCceeEEEeccc
Q 040129 110 LFPEKFLHLVHVSYA 124 (333)
Q Consensus 110 lfP~~Sv~~~~Ss~a 124 (333)
-||++|+|+++|..+
T Consensus 146 p~~~~sfD~I~~~~~ 160 (272)
T PRK11088 146 PFADQSLDAIIRIYA 160 (272)
T ss_pred CCcCCceeEEEEecC
Confidence 478899999998653
No 64
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.74 E-value=0.0021 Score=55.89 Aligned_cols=100 Identities=15% Similarity=0.191 Sum_probs=56.7
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEe
Q 040129 111 FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
+|++++|++++++++||+.+ ...+|+.=.+-|+|||++++.-
T Consensus 40 ~~~~~fD~v~~~~~l~~~~d--------------------------------------~~~~l~ei~rvLkpGG~l~i~d 81 (160)
T PLN02232 40 FDDCEFDAVTMGYGLRNVVD--------------------------------------RLRAMKEMYRVLKPGSRVSILD 81 (160)
T ss_pred CCCCCeeEEEecchhhcCCC--------------------------------------HHHHHHHHHHHcCcCeEEEEEE
Confidence 57889999999999999632 1123444457899999999886
Q ss_pred cCCCCCCCCccchhhHHHHHH-HHHHHHHHhccCCCHhhhhcCCcC----cccCCHHHHHHHHHhCCcEEEeE
Q 040129 191 PSIPDGMPFSEIANGLMYNCM-GTILYDMVKVGLLSEAQVDSFNLP----IYACPPGEFGAVVERNGNFRIEV 258 (333)
Q Consensus 191 ~gr~~~~~~~~~~~~~~~~~l-~~~l~~mv~eG~i~~~~~d~fn~P----~y~ps~~E~~~~ie~~G~F~I~~ 258 (333)
.+.++.... ...+... ... +.--|.+... .+.+..- ..+++.+|+.++++++| |+..+
T Consensus 82 ~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~-~~~y~yl~~si~~f~~~~el~~ll~~aG-F~~~~ 144 (160)
T PLN02232 82 FNKSNQSVT-----TFMQGWMIDNV---VVPVATVYDL-AKEYEYLKYSINGYLTGEELETLALEAG-FSSAC 144 (160)
T ss_pred CCCCChHHH-----HHHHHHHccch---HhhhhHHhCC-hHHHHhHHHHHHHCcCHHHHHHHHHHcC-CCcce
Confidence 665443211 1111100 000 0000111100 1122111 24689999999999999 86433
No 65
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=96.71 E-value=0.011 Score=55.04 Aligned_cols=44 Identities=30% Similarity=0.452 Sum_probs=36.3
Q ss_pred CCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEecC
Q 040129 113 EKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITNPS 192 (333)
Q Consensus 113 ~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g 192 (333)
++|||++.+.-|+|| =|+.+|.+.=.+-|++.|.+++...-
T Consensus 98 e~SVDlI~~Aqa~HW---------------------------------------Fdle~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 98 EESVDLITAAQAVHW---------------------------------------FDLERFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred CcceeeehhhhhHHh---------------------------------------hchHHHHHHHHHHcCCCCCEEEEEEc
Confidence 899999999999999 26677778888899998877777765
Q ss_pred CCC
Q 040129 193 IPD 195 (333)
Q Consensus 193 r~~ 195 (333)
+++
T Consensus 139 ~dd 141 (261)
T KOG3010|consen 139 NDD 141 (261)
T ss_pred cCC
Confidence 543
No 66
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=96.69 E-value=0.0077 Score=56.37 Aligned_cols=114 Identities=17% Similarity=0.211 Sum_probs=74.4
Q ss_pred CCcEEEEeecCCCCcccHHHHHH--------------HHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCcc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQD--------------LIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQE 94 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~--------------ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~ 94 (333)
+..-+|+|+||+.|.-++.+.+. ..+..++.... + .-...++|+.-| ++...+..
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l-n--~l~~ri~v~~~D-----i~~~~~~~--- 111 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL-N--PLEERIQVIEAD-----IKEFLKAL--- 111 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHh-C--cchhceeEehhh-----HHHhhhcc---
Confidence 44789999999999999998754 22222222211 1 112356666654 44443333
Q ss_pred ccceeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHH
Q 040129 95 IHFFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLN 174 (333)
Q Consensus 95 ~~~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~ 174 (333)
+.+++|+++|+ |+-.. -... .++.+..+-.+.+..-++..+++
T Consensus 112 -----------------~~~~fD~Ii~N---------PPyf~---------~~~~--~~~~~~~~~Ar~e~~~~le~~i~ 154 (248)
T COG4123 112 -----------------VFASFDLIICN---------PPYFK---------QGSR--LNENPLRAIARHEITLDLEDLIR 154 (248)
T ss_pred -----------------cccccCEEEeC---------CCCCC---------Cccc--cCcChhhhhhhhhhcCCHHHHHH
Confidence 33378899886 54332 2222 22445566667778889999999
Q ss_pred hhhhhhccCceEEEEe
Q 040129 175 NRAKEIVPGGMIIITN 190 (333)
Q Consensus 175 ~Ra~EL~~GG~mvl~~ 190 (333)
.=++-|++||++.++.
T Consensus 155 ~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 155 AAAKLLKPGGRLAFVH 170 (248)
T ss_pred HHHHHccCCCEEEEEe
Confidence 9999999999999887
No 67
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=96.65 E-value=0.0096 Score=53.25 Aligned_cols=52 Identities=29% Similarity=0.521 Sum_probs=34.1
Q ss_pred ccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEE
Q 040129 109 RLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIII 188 (333)
Q Consensus 109 rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl 188 (333)
.++|++++|.+++++..+|-.+ ... |.++. -..||+.=++-|+|||.+++
T Consensus 81 ~~~~~~~~d~v~~~~pdpw~k~-~h~----------~~r~~-------------------~~~~l~~~~r~LkpgG~l~~ 130 (194)
T TIGR00091 81 KFFPDGSLSKVFLNFPDPWPKK-RHN----------KRRIT-------------------QPHFLKEYANVLKKGGVIHF 130 (194)
T ss_pred hhCCCCceeEEEEECCCcCCCC-Ccc----------ccccC-------------------CHHHHHHHHHHhCCCCEEEE
Confidence 3467789999999999999432 110 00110 12345555688999999988
Q ss_pred Ee
Q 040129 189 TN 190 (333)
Q Consensus 189 ~~ 190 (333)
..
T Consensus 131 ~t 132 (194)
T TIGR00091 131 KT 132 (194)
T ss_pred Ee
Confidence 76
No 68
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.64 E-value=0.013 Score=53.19 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHH
Q 040129 8 KDHIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 8 ~~~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~ 49 (333)
.|.+...+.+.+.. ...-+|+|+||++|..|..+.
T Consensus 61 ~p~~~~~~~~~l~~-------~~g~~VLdIG~GsG~~t~~la 95 (212)
T PRK13942 61 AIHMVAIMCELLDL-------KEGMKVLEIGTGSGYHAAVVA 95 (212)
T ss_pred cHHHHHHHHHHcCC-------CCcCEEEEECCcccHHHHHHH
Confidence 45555555554542 234689999999999996654
No 69
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=96.61 E-value=0.017 Score=51.79 Aligned_cols=41 Identities=15% Similarity=0.175 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHH
Q 040129 6 VTKDHIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 6 ~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~ 49 (333)
.+.++..+.+.+.+....+ -+...+|+|+||++|..++.+.
T Consensus 24 ~~~~~~~~~~~d~l~l~~~---l~~g~~VLDiGcGtG~~al~la 64 (187)
T PRK00107 24 DPEELWERHILDSLAIAPY---LPGGERVLDVGSGAGFPGIPLA 64 (187)
T ss_pred CHHHHHHHHHHHHHHHHhh---cCCCCeEEEEcCCCCHHHHHHH
Confidence 4455555555433333222 1235799999999999888765
No 70
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=96.59 E-value=0.0081 Score=48.45 Aligned_cols=21 Identities=24% Similarity=0.553 Sum_probs=17.6
Q ss_pred HHHHHhhhhhhccCceEEEEe
Q 040129 170 ERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 170 ~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
..+++.-.+.|+|||++++.+
T Consensus 102 ~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 102 QEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred HHHHHHHHHHcCCCCEEEEEe
Confidence 356777789999999999986
No 71
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=96.55 E-value=0.012 Score=53.19 Aligned_cols=19 Identities=16% Similarity=0.104 Sum_probs=15.9
Q ss_pred CcEEEEeecCCCCcccHHH
Q 040129 30 NTIRLADCGCAVGPNTFNA 48 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~ 48 (333)
...+|+|+||++|..|..+
T Consensus 78 ~~~~VLeiG~GsG~~t~~l 96 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVL 96 (212)
T ss_pred CCCEEEEECCCccHHHHHH
Confidence 3579999999999998743
No 72
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=96.53 E-value=0.0073 Score=59.97 Aligned_cols=108 Identities=14% Similarity=0.142 Sum_probs=57.7
Q ss_pred EEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccc--c-ceeeccCccccc
Q 040129 32 IRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEI--H-FFVAGVPGSFHK 108 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~--~-~f~~~vpgSFy~ 108 (333)
-+|+|+||++|.-++.+.+. .|..+|...|...-=....=.++..+. . .-+..+.+..+.
T Consensus 230 ~~VLDLGCGtGvi~i~la~~-----------------~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~ 292 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDK-----------------NPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS 292 (378)
T ss_pred CeEEEEeccccHHHHHHHHh-----------------CCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc
Confidence 48999999999977655421 245566666664210000000010000 0 001112233333
Q ss_pred ccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEE
Q 040129 109 RLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIII 188 (333)
Q Consensus 109 rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl 188 (333)
.+ +..++|+++|+-.+|+.-.++. .. ...+++.=.+-|+|||.+++
T Consensus 293 ~~-~~~~fDlIlsNPPfh~~~~~~~----------------------~i-----------a~~l~~~a~~~LkpGG~L~i 338 (378)
T PRK15001 293 GV-EPFRFNAVLCNPPFHQQHALTD----------------------NV-----------AWEMFHHARRCLKINGELYI 338 (378)
T ss_pred cC-CCCCEEEEEECcCcccCccCCH----------------------HH-----------HHHHHHHHHHhcccCCEEEE
Confidence 33 5568999999999997432211 11 11234444577999999999
Q ss_pred Ee
Q 040129 189 TN 190 (333)
Q Consensus 189 ~~ 190 (333)
+.
T Consensus 339 V~ 340 (378)
T PRK15001 339 VA 340 (378)
T ss_pred EE
Confidence 85
No 73
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=96.53 E-value=0.0054 Score=60.06 Aligned_cols=105 Identities=11% Similarity=0.193 Sum_probs=58.8
Q ss_pred EEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCcccccccCC
Q 040129 33 RLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKRLFP 112 (333)
Q Consensus 33 ~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~rlfP 112 (333)
+|+|+||++|..++.+... .|..+|...|....=-...=.++..+. +=.-.+++..+.. .
T Consensus 199 ~VLDlGCG~G~ls~~la~~-----------------~p~~~v~~vDis~~Al~~A~~nl~~n~-l~~~~~~~D~~~~--~ 258 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARH-----------------SPKIRLTLSDVSAAALESSRATLAANG-LEGEVFASNVFSD--I 258 (342)
T ss_pred eEEEeccCcCHHHHHHHHh-----------------CCCCEEEEEECCHHHHHHHHHHHHHcC-CCCEEEEcccccc--c
Confidence 7999999999977654421 234456666653211110000110000 0001122333332 2
Q ss_pred CCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEe
Q 040129 113 EKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 113 ~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
++++|+++|+-.+||.-.. ...+...|++.=++-|+|||.|+++.
T Consensus 259 ~~~fDlIvsNPPFH~g~~~---------------------------------~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 259 KGRFDMIISNPPFHDGIQT---------------------------------SLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred CCCccEEEECCCccCCccc---------------------------------cHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 5679999999999972110 01345667777778899999999875
No 74
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.51 E-value=0.013 Score=52.85 Aligned_cols=19 Identities=11% Similarity=0.249 Sum_probs=16.0
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
.-+|.|+||++|..|..+.
T Consensus 73 ~~~VLDiG~GsG~~~~~la 91 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCA 91 (205)
T ss_pred CCEEEEECcCccHHHHHHH
Confidence 3689999999999986654
No 75
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=96.48 E-value=0.072 Score=48.86 Aligned_cols=19 Identities=11% Similarity=0.025 Sum_probs=17.1
Q ss_pred EEEEeecCCCCcccHHHHH
Q 040129 32 IRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~~ 50 (333)
-+|.|.||+.|.|++.+.+
T Consensus 39 ~rvL~~gCG~G~da~~LA~ 57 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAE 57 (218)
T ss_pred CeEEEeCCCChHhHHHHHh
Confidence 5999999999999998873
No 76
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=96.48 E-value=0.016 Score=52.28 Aligned_cols=94 Identities=20% Similarity=0.370 Sum_probs=64.8
Q ss_pred cCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEE
Q 040129 110 LFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIIT 189 (333)
Q Consensus 110 lfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~ 189 (333)
-||++|+|+|+-|-+|+=+.+ |..+.. +=|+.|.+.+++
T Consensus 70 ~f~d~sFD~VIlsqtLQ~~~~-P~~vL~----------------------------------------EmlRVgr~~IVs 108 (193)
T PF07021_consen 70 DFPDQSFDYVILSQTLQAVRR-PDEVLE----------------------------------------EMLRVGRRAIVS 108 (193)
T ss_pred hCCCCCccEEehHhHHHhHhH-HHHHHH----------------------------------------HHHHhcCeEEEE
Confidence 389999999999999987655 554432 446779999999
Q ss_pred ecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcc------cCCHHHHHHHHHhCCcEEEeEEEEeC
Q 040129 190 NPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIY------ACPPGEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 190 ~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y------~ps~~E~~~~ie~~G~F~I~~le~~~ 263 (333)
|+. .+ .|..-- .+.-.|..+..+ .+..+|| +.|..++++..++.| ++|++-..+.
T Consensus 109 FPN-----------Fg-~W~~R~----~l~~~GrmPvt~--~lPy~WYdTPNih~~Ti~DFe~lc~~~~-i~I~~~~~~~ 169 (193)
T PF07021_consen 109 FPN-----------FG-HWRNRL----QLLLRGRMPVTK--ALPYEWYDTPNIHLCTIKDFEDLCRELG-IRIEERVFLD 169 (193)
T ss_pred ecC-----------hH-HHHHHH----HHHhcCCCCCCC--CCCCcccCCCCcccccHHHHHHHHHHCC-CEEEEEEEEc
Confidence 953 12 233222 233348776543 2334444 468999999999999 8988877765
No 77
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=96.46 E-value=0.026 Score=49.93 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=16.3
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
.-+|+|+||++|..++.+.
T Consensus 32 ~~~vLDiG~G~G~~~~~la 50 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAA 50 (187)
T ss_pred CCEEEEECCcCCHHHHHHH
Confidence 4589999999999888765
No 78
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=96.40 E-value=0.027 Score=49.40 Aligned_cols=25 Identities=24% Similarity=0.567 Sum_probs=18.6
Q ss_pred HHHHHHhhhhhhccCceEEEEecCC
Q 040129 169 LERFLNNRAKEIVPGGMIIITNPSI 193 (333)
Q Consensus 169 ~~~FL~~Ra~EL~~GG~mvl~~~gr 193 (333)
+..||+.=.+-|+|||++++...+.
T Consensus 119 ~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 119 IDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred HHHHHHhHHHhhCCCCEEEEEEecc
Confidence 4456666667899999999987543
No 79
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=96.34 E-value=0.019 Score=55.32 Aligned_cols=141 Identities=20% Similarity=0.220 Sum_probs=87.8
Q ss_pred EEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCc----cccceeeccCcccc
Q 040129 32 IRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQ----EIHFFVAGVPGSFH 107 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~----~~~~f~~~vpgSFy 107 (333)
-+|+|+||.+|.-++.+... + + =.|+--| |+-.|..-|+.+.. ...+|.. |-..
T Consensus 117 k~VLDIGC~nGY~~frM~~~------------G-----A-~~ViGiD-P~~lf~~QF~~i~~~lg~~~~~~~l--plgv- 174 (315)
T PF08003_consen 117 KRVLDIGCNNGYYSFRMLGR------------G-----A-KSVIGID-PSPLFYLQFEAIKHFLGQDPPVFEL--PLGV- 174 (315)
T ss_pred CEEEEecCCCcHHHHHHhhc------------C-----C-CEEEEEC-CChHHHHHHHHHHHHhCCCccEEEc--Ccch-
Confidence 58999999999988776521 1 1 1133333 44455555554432 2223332 2222
Q ss_pred cccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEE
Q 040129 108 KRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMII 187 (333)
Q Consensus 108 ~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mv 187 (333)
+.|=+.+++|+|||.-.|=-++. |- +. |+.=.+-|++||.||
T Consensus 175 E~Lp~~~~FDtVF~MGVLYHrr~-Pl----------------------~~---------------L~~Lk~~L~~gGeLv 216 (315)
T PF08003_consen 175 EDLPNLGAFDTVFSMGVLYHRRS-PL----------------------DH---------------LKQLKDSLRPGGELV 216 (315)
T ss_pred hhccccCCcCEEEEeeehhccCC-HH----------------------HH---------------HHHHHHhhCCCCEEE
Confidence 22222577999998776655333 31 11 333337899999999
Q ss_pred EEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEE
Q 040129 188 ITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFR 255 (333)
Q Consensus 188 l~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~ 255 (333)
+..+..+.+.. .-+++++....|+-=|+-||..-++..++++| |+
T Consensus 217 LETlvi~g~~~----------------------~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~g-F~ 261 (315)
T PF08003_consen 217 LETLVIDGDEN----------------------TVLVPEDRYAKMRNVWFIPSVAALKNWLERAG-FK 261 (315)
T ss_pred EEEeeecCCCc----------------------eEEccCCcccCCCceEEeCCHHHHHHHHHHcC-Cc
Confidence 99765443221 12466666778888899999999999999999 75
No 80
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=96.34 E-value=0.027 Score=51.04 Aligned_cols=35 Identities=11% Similarity=0.217 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHH
Q 040129 8 KDHIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 8 ~~~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~ 49 (333)
.|.+.+.+.+.+.. ...-+|.|+||++|..|..+.
T Consensus 62 ~p~~~~~~~~~l~~-------~~~~~VLDiG~GsG~~a~~la 96 (215)
T TIGR00080 62 APHMVAMMTELLEL-------KPGMKVLEIGTGSGYQAAVLA 96 (215)
T ss_pred hHHHHHHHHHHhCC-------CCcCEEEEECCCccHHHHHHH
Confidence 34455555555532 234699999999999997654
No 81
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=96.33 E-value=0.032 Score=48.83 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=16.4
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
.-+|+|+||++|.-++.+.
T Consensus 32 ~~~vLDlG~G~G~i~~~la 50 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALA 50 (170)
T ss_dssp TCEEEEETSTTSHHHHHHH
T ss_pred CCeEEEecCChHHHHHHHH
Confidence 3579999999999998776
No 82
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=96.32 E-value=0.04 Score=52.45 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=18.9
Q ss_pred hHHHHHHhhhhhhccCceEEEEec
Q 040129 168 DLERFLNNRAKEIVPGGMIIITNP 191 (333)
Q Consensus 168 D~~~FL~~Ra~EL~~GG~mvl~~~ 191 (333)
....|++.=.+-|+|||++++.+.
T Consensus 229 ~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 229 LVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEEC
Confidence 345677777788999999999874
No 83
>PRK04266 fibrillarin; Provisional
Probab=96.30 E-value=0.056 Score=49.91 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=16.6
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
.-+|+|+||++|..|+.+.+
T Consensus 73 g~~VlD~G~G~G~~~~~la~ 92 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSD 92 (226)
T ss_pred CCEEEEEccCCCHHHHHHHH
Confidence 36999999999998877653
No 84
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=96.16 E-value=0.012 Score=53.91 Aligned_cols=125 Identities=14% Similarity=0.189 Sum_probs=62.1
Q ss_pred cEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCcc--ccceeeccCccccc
Q 040129 31 TIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQE--IHFFVAGVPGSFHK 108 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~--~~~f~~~vpgSFy~ 108 (333)
..+|+|+||++|..++.+.... |..+++..|.-..=....=+.+... .+ +.-+.+.+..
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~-----------------~~~~v~~iD~~~~~~~~a~~~~~~~~~~~--~~~~~~d~~~ 148 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKER-----------------PDARVTAVDISPEALAVARKNAARLGLDN--VTFLQSDWFE 148 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHC-----------------CCCEEEEEECCHHHHHHHHHHHHHcCCCe--EEEEECchhc
Confidence 4689999999998887765321 1233444443221111111111000 01 1222334443
Q ss_pred ccCCCCceeEEEeccccccccCC---CccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCce
Q 040129 109 RLFPEKFLHLVHVSYALHWLSKV---PEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGM 185 (333)
Q Consensus 109 rlfP~~Sv~~~~Ss~alHWLS~v---P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~ 185 (333)
.+|++++|+++|+--.+..+.. +..+.. | .+..... -......++..|++.=.+-|+|||.
T Consensus 149 -~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~-----------~---e~~~~~~-~~~~~~~~~~~~i~~~~~~L~~gG~ 212 (251)
T TIGR03534 149 -PLPGGKFDLIVSNPPYIPEADIHLLDPEVRF-----------H---EPRLALF-GGEDGLDFYRRIIAQAPRLLKPGGW 212 (251)
T ss_pred -cCcCCceeEEEECCCCCchhhhhhcChhhhh-----------c---CCHHHHc-CCCcHHHHHHHHHHHHHHhcccCCE
Confidence 3567889999997555432221 111110 0 0000000 0011234566778887889999999
Q ss_pred EEEEe
Q 040129 186 IIITN 190 (333)
Q Consensus 186 mvl~~ 190 (333)
+++..
T Consensus 213 ~~~~~ 217 (251)
T TIGR03534 213 LLLEI 217 (251)
T ss_pred EEEEE
Confidence 99865
No 85
>PTZ00146 fibrillarin; Provisional
Probab=96.10 E-value=0.097 Score=50.26 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHHH
Q 040129 8 KDHIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 8 ~~~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~ 50 (333)
++.|-.||-.=++...+ ..-.+|+|+||++|..|..+.+
T Consensus 114 rSKlaa~i~~g~~~l~I----kpG~~VLDLGaG~G~~t~~lAd 152 (293)
T PTZ00146 114 RSKLAAAIIGGVANIPI----KPGSKVLYLGAASGTTVSHVSD 152 (293)
T ss_pred ccHHHHHHHCCcceecc----CCCCEEEEeCCcCCHHHHHHHH
Confidence 34566666433332211 2236899999999998866554
No 86
>PRK14967 putative methyltransferase; Provisional
Probab=96.09 E-value=0.09 Score=47.90 Aligned_cols=68 Identities=22% Similarity=0.365 Sum_probs=38.0
Q ss_pred hHHHHHHhhhhhhccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHH
Q 040129 168 DLERFLNNRAKEIVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAV 247 (333)
Q Consensus 168 D~~~FL~~Ra~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ 247 (333)
++..|++.=.+-|++||++++......+ +.++++.+...|+ .-+.+.+..+|+ .+..-.....
T Consensus 137 ~~~~~l~~a~~~Lk~gG~l~~~~~~~~~---------------~~~~~~~l~~~g~-~~~~~~~~~~~~-~~~~~~~~~~ 199 (223)
T PRK14967 137 VLDRLCDAAPALLAPGGSLLLVQSELSG---------------VERTLTRLSEAGL-DAEVVASQWIPF-GPVLRARAAW 199 (223)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEecccC---------------HHHHHHHHHHCCC-CeEEEEeeccCc-cHHHHHHHHH
Confidence 4566777667889999999987644321 1123333333343 333444555663 3333344466
Q ss_pred HHhCC
Q 040129 248 VERNG 252 (333)
Q Consensus 248 ie~~G 252 (333)
++++|
T Consensus 200 ~~~~~ 204 (223)
T PRK14967 200 LERRG 204 (223)
T ss_pred HHHcC
Confidence 77787
No 87
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.00 E-value=0.006 Score=61.99 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=17.9
Q ss_pred cCCCCceeEEEeccccc-cccC
Q 040129 110 LFPEKFLHLVHVSYALH-WLSK 130 (333)
Q Consensus 110 lfP~~Sv~~~~Ss~alH-WLS~ 130 (333)
-||++++|++||+-|+. |.+.
T Consensus 176 Pfp~~~fDmvHcsrc~i~W~~~ 197 (506)
T PF03141_consen 176 PFPSNAFDMVHCSRCLIPWHPN 197 (506)
T ss_pred cCCccchhhhhcccccccchhc
Confidence 49999999999999986 7544
No 88
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=96.00 E-value=0.014 Score=58.04 Aligned_cols=98 Identities=21% Similarity=0.339 Sum_probs=60.4
Q ss_pred EEEEeecCCCCcccHHHHHH--------------HHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccc
Q 040129 32 IRLADCGCAVGPNTFNAMQD--------------LIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHF 97 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~~~--------------ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~ 97 (333)
-.++|+||++|..++.+... .+..+.++....+ ...+.++..|.. .
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g----L~NV~~i~~DA~-----~----------- 183 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN----LKNLLIINYDAR-----L----------- 183 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC----CCcEEEEECCHH-----H-----------
Confidence 47999999999998887632 3333333333321 223444444431 1
Q ss_pred eeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhh
Q 040129 98 FVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRA 177 (333)
Q Consensus 98 f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra 177 (333)
.-..+|++|+|.++.++...|-.+ +- .++ -...||+.=+
T Consensus 184 ---------ll~~~~~~s~D~I~lnFPdPW~Kk-rH------------RRl-------------------v~~~fL~e~~ 222 (390)
T PRK14121 184 ---------LLELLPSNSVEKIFVHFPVPWDKK-PH------------RRV-------------------ISEDFLNEAL 222 (390)
T ss_pred ---------hhhhCCCCceeEEEEeCCCCcccc-ch------------hhc-------------------cHHHHHHHHH
Confidence 113478999999999887777221 10 011 1245667777
Q ss_pred hhhccCceEEEEe
Q 040129 178 KEIVPGGMIIITN 190 (333)
Q Consensus 178 ~EL~~GG~mvl~~ 190 (333)
+-|+|||.+.+..
T Consensus 223 RvLkpGG~l~l~T 235 (390)
T PRK14121 223 RVLKPGGTLELRT 235 (390)
T ss_pred HHcCCCcEEEEEE
Confidence 9999999998876
No 89
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.00 E-value=0.037 Score=50.85 Aligned_cols=101 Identities=23% Similarity=0.395 Sum_probs=69.0
Q ss_pred CcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCcccccc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKR 109 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~r 109 (333)
+.-+|+|+|+++|..+..++. + .|.+++..-|||.. ........ =+.-+||.|+ .
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~--------~---------~P~l~~~v~Dlp~v-----~~~~~~~~--rv~~~~gd~f-~ 154 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALAR--------A---------YPNLRATVFDLPEV-----IEQAKEAD--RVEFVPGDFF-D 154 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHH--------H---------STTSEEEEEE-HHH-----HCCHHHTT--TEEEEES-TT-T
T ss_pred CccEEEeccCcchHHHHHHHH--------H---------CCCCcceeeccHhh-----hhcccccc--ccccccccHH-h
Confidence 345899999999988865542 2 46788999999973 11111111 2345999999 7
Q ss_pred cCCCCceeEEEeccccc-cccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccC--ceE
Q 040129 110 LFPEKFLHLVHVSYALH-WLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPG--GMI 186 (333)
Q Consensus 110 lfP~~Sv~~~~Ss~alH-WLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~G--G~m 186 (333)
=+|. .|+++-...|| | |+ +|-..+|+.=++-|+|| |++
T Consensus 155 ~~P~--~D~~~l~~vLh~~----~d---------------------------------~~~~~iL~~~~~al~pg~~g~l 195 (241)
T PF00891_consen 155 PLPV--ADVYLLRHVLHDW----SD---------------------------------EDCVKILRNAAAALKPGKDGRL 195 (241)
T ss_dssp CCSS--ESEEEEESSGGGS-----H---------------------------------HHHHHHHHHHHHHSEECTTEEE
T ss_pred hhcc--ccceeeehhhhhc----ch---------------------------------HHHHHHHHHHHHHhCCCCCCeE
Confidence 7898 99999999998 6 21 34455688888999999 999
Q ss_pred EEEecCCC
Q 040129 187 IITNPSIP 194 (333)
Q Consensus 187 vl~~~gr~ 194 (333)
++.=.-.+
T Consensus 196 lI~e~~~~ 203 (241)
T PF00891_consen 196 LIIEMVLP 203 (241)
T ss_dssp EEEEEEEC
T ss_pred EEEeeccC
Confidence 88844333
No 90
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=95.95 E-value=0.021 Score=51.79 Aligned_cols=77 Identities=21% Similarity=0.290 Sum_probs=42.1
Q ss_pred CcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCcccccc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKR 109 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~r 109 (333)
..-+|+|+||++|.++..+.... +..+++--|.-.+=-...=+.++. ..+ +.|+...
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~-----------------~~~~v~giDiS~~~l~~A~~~~~~-~~~----~~~d~~~- 99 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLL-----------------PFKHIYGVEINEYAVEKAKAYLPN-INI----IQGSLFD- 99 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhC-----------------CCCeEEEEECCHHHHHHHHhhCCC-CcE----EEeeccC-
Confidence 34679999999998886654320 112233333322111111001111 011 2344444
Q ss_pred cCCCCceeEEEecccccccc
Q 040129 110 LFPEKFLHLVHVSYALHWLS 129 (333)
Q Consensus 110 lfP~~Sv~~~~Ss~alHWLS 129 (333)
-+|++++|+++|+.+||+++
T Consensus 100 ~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 100 PFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred CCCCCCEEEEEECChhhhCC
Confidence 57899999999999998763
No 91
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.041 Score=50.26 Aligned_cols=49 Identities=29% Similarity=0.412 Sum_probs=38.1
Q ss_pred eeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEec
Q 040129 116 LHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITNP 191 (333)
Q Consensus 116 v~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~ 191 (333)
|++.+---+..|=...|- | .|+++.+.+++-+++.+| |++||+||+-..
T Consensus 122 V~v~~gDG~~G~~~~aPy---D---------~I~Vtaaa~~vP~~Ll~Q---------------L~~gGrlv~PvG 170 (209)
T COG2518 122 VTVRHGDGSKGWPEEAPY---D---------RIIVTAAAPEVPEALLDQ---------------LKPGGRLVIPVG 170 (209)
T ss_pred eEEEECCcccCCCCCCCc---C---------EEEEeeccCCCCHHHHHh---------------cccCCEEEEEEc
Confidence 666666678888555553 2 788888877888888855 899999999986
No 92
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=95.80 E-value=0.0095 Score=54.43 Aligned_cols=87 Identities=21% Similarity=0.343 Sum_probs=45.6
Q ss_pred CCCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCC-CchHHHhhcCCccccceeeccCccc
Q 040129 28 SSNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSS-NDFNTLFTSLPQEIHFFVAGVPGSF 106 (333)
Q Consensus 28 ~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~-NDFn~lF~~l~~~~~~f~~~vpgSF 106 (333)
.++..+|||+||+++.-+ .++.. .+.|+-=||-. ||+=+ .|=++-||
T Consensus 70 ~~~~~viaD~GCGdA~la--------~~~~~------------~~~V~SfDLva~n~~Vt---------acdia~vP--- 117 (219)
T PF05148_consen 70 RPKSLVIADFGCGDAKLA--------KAVPN------------KHKVHSFDLVAPNPRVT---------ACDIANVP--- 117 (219)
T ss_dssp S-TTS-EEEES-TT-HHH--------HH--S---------------EEEEESS-SSTTEE---------ES-TTS-S---
T ss_pred cCCCEEEEECCCchHHHH--------Hhccc------------CceEEEeeccCCCCCEE---------EecCccCc---
Confidence 356789999999998766 22221 13344444432 32211 12223445
Q ss_pred ccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceE
Q 040129 107 HKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMI 186 (333)
Q Consensus 107 y~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~m 186 (333)
++++|+|++..+-||.= .||..||+-=.+-||+||.|
T Consensus 118 ----L~~~svDv~VfcLSLMG---------------------------------------Tn~~~fi~EA~RvLK~~G~L 154 (219)
T PF05148_consen 118 ----LEDESVDVAVFCLSLMG---------------------------------------TNWPDFIREANRVLKPGGIL 154 (219)
T ss_dssp ------TT-EEEEEEES---S---------------------------------------S-HHHHHHHHHHHEEEEEEE
T ss_pred ----CCCCceeEEEEEhhhhC---------------------------------------CCcHHHHHHHHheeccCcEE
Confidence 48999999988766531 36777888778899999999
Q ss_pred EEE
Q 040129 187 IIT 189 (333)
Q Consensus 187 vl~ 189 (333)
.+.
T Consensus 155 ~IA 157 (219)
T PF05148_consen 155 KIA 157 (219)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 93
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=95.76 E-value=0.19 Score=45.82 Aligned_cols=170 Identities=18% Similarity=0.196 Sum_probs=105.5
Q ss_pred hhhhHHHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCch
Q 040129 5 NVTKDHIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDF 84 (333)
Q Consensus 5 ~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDF 84 (333)
+.=|.-|-+.+++.+.. .+. +|.++||++|--+..+... -|.++--=+|...+-+
T Consensus 8 eRNk~pIl~vL~~~l~~-------~~~-~vLEiaSGtGqHa~~FA~~-----------------lP~l~WqPSD~~~~~~ 62 (204)
T PF06080_consen 8 ERNKDPILEVLKQYLPD-------SGT-RVLEIASGTGQHAVYFAQA-----------------LPHLTWQPSDPDDNLR 62 (204)
T ss_pred hhCHhHHHHHHHHHhCc-------cCc-eEEEEcCCccHHHHHHHHH-----------------CCCCEEcCCCCChHHH
Confidence 33455566666665532 222 8999999999887665421 3556667788888888
Q ss_pred HHHhhcCCcc-----c-cc--------eeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceee
Q 040129 85 NTLFTSLPQE-----I-HF--------FVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHY 150 (333)
Q Consensus 85 n~lF~~l~~~-----~-~~--------f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~ 150 (333)
.++-.-+... . +. -..+.|.. ++..++|.++|.+.+|-.+- ..
T Consensus 63 ~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~-----~~~~~~D~i~~~N~lHI~p~---~~--------------- 119 (204)
T PF06080_consen 63 PSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAP-----LSPESFDAIFCINMLHISPW---SA--------------- 119 (204)
T ss_pred hhHHHHHHhcCCcccCCCeEeecCCCCCccccccc-----cCCCCcceeeehhHHHhcCH---HH---------------
Confidence 7775433211 1 11 11111111 26788999999999998332 11
Q ss_pred cCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhh
Q 040129 151 AFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVD 230 (333)
Q Consensus 151 ~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d 230 (333)
. ..+++.=++-|++||.|++.-+=..++..+++ .. ..+...|++
T Consensus 120 -------~-----------~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~--SN---~~FD~sLr~------------- 163 (204)
T PF06080_consen 120 -------V-----------EGLFAGAARLLKPGGLLFLYGPFNRDGKFTSE--SN---AAFDASLRS------------- 163 (204)
T ss_pred -------H-----------HHHHHHHHHhCCCCCEEEEeCCcccCCEeCCc--HH---HHHHHHHhc-------------
Confidence 1 12344556899999999999876666666554 12 223343332
Q ss_pred cCCcCcccCCHHHHHHHHHhCCcEEEeEEE
Q 040129 231 SFNLPIYACPPGEFGAVVERNGNFRIEVMG 260 (333)
Q Consensus 231 ~fn~P~y~ps~~E~~~~ie~~G~F~I~~le 260 (333)
-+.-|-.+..+|+.++-+++| ++++...
T Consensus 164 -rdp~~GiRD~e~v~~lA~~~G-L~l~~~~ 191 (204)
T PF06080_consen 164 -RDPEWGIRDIEDVEALAAAHG-LELEEDI 191 (204)
T ss_pred -CCCCcCccCHHHHHHHHHHCC-CccCccc
Confidence 244477899999999999999 6654443
No 94
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=95.75 E-value=0.14 Score=46.78 Aligned_cols=18 Identities=11% Similarity=-0.099 Sum_probs=16.8
Q ss_pred EEEEeecCCCCcccHHHH
Q 040129 32 IRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~ 49 (333)
-+|.|+||+.|.|++.+.
T Consensus 36 ~rvLd~GCG~G~da~~LA 53 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLA 53 (213)
T ss_pred CeEEEeCCCchhHHHHHH
Confidence 599999999999999887
No 95
>PRK14968 putative methyltransferase; Provisional
Probab=95.73 E-value=0.25 Score=42.86 Aligned_cols=23 Identities=30% Similarity=0.759 Sum_probs=18.6
Q ss_pred HHHHHHhhhhhhccCceEEEEec
Q 040129 169 LERFLNNRAKEIVPGGMIIITNP 191 (333)
Q Consensus 169 ~~~FL~~Ra~EL~~GG~mvl~~~ 191 (333)
+..|++.-.+-|+|||.+++...
T Consensus 127 ~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 127 IDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred HHHHHHHHHHhcCCCeEEEEEEc
Confidence 45677888899999999988763
No 96
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=95.65 E-value=0.017 Score=51.19 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=19.5
Q ss_pred HhHHHHHHhhhhhhccCceEEEEe
Q 040129 167 KDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 167 ~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
.+...+|+.=.+-|+|||++++..
T Consensus 123 ~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 123 DLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred HHHHHHHHHHHHHccCCCEEEEEE
Confidence 356677888888999999999975
No 97
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.64 E-value=0.15 Score=49.23 Aligned_cols=19 Identities=16% Similarity=0.107 Sum_probs=16.1
Q ss_pred EEEEeecCCCCcccHHHHH
Q 040129 32 IRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~~ 50 (333)
.+|+|+||++|..++.+..
T Consensus 135 ~~VLDlG~GsG~iai~la~ 153 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAY 153 (307)
T ss_pred CEEEEEechhhHHHHHHHH
Confidence 5899999999998877653
No 98
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=95.63 E-value=0.042 Score=53.65 Aligned_cols=109 Identities=22% Similarity=0.369 Sum_probs=62.6
Q ss_pred CcEEEEeecCCCCcccHHHH-------------HHHHHHHHHHhhhcCCC--CCCCcceEEecCCCCCchHHHhhcCCcc
Q 040129 30 NTIRLADCGCAVGPNTFNAM-------------QDLIEIVKHKYKSQCPN--SQNPEFHVSFNDQSSNDFNTLFTSLPQE 94 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~-------------~~ii~~i~~~~~~~~~~--~~~~~~~v~~nDlP~NDFn~lF~~l~~~ 94 (333)
...+|+||||+-|.-..-.. ...|+..+++|.+.... +..+.+.+.-.+...+.|+.-..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~----- 136 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLR----- 136 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHH-----
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhh-----
Confidence 67999999999998655443 45556666677432111 01111111112223333322211
Q ss_pred ccceeeccCcccccccCC--CCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHH
Q 040129 95 IHFFVAGVPGSFHKRLFP--EKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERF 172 (333)
Q Consensus 95 ~~~f~~~vpgSFy~rlfP--~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~F 172 (333)
..+| ...+|+|-+-.|||..=.- ++-...|
T Consensus 137 --------------~~~~~~~~~FDvVScQFalHY~Fes----------------------------------e~~ar~~ 168 (331)
T PF03291_consen 137 --------------EKLPPRSRKFDVVSCQFALHYAFES----------------------------------EEKARQF 168 (331)
T ss_dssp --------------CTSSSTTS-EEEEEEES-GGGGGSS----------------------------------HHHHHHH
T ss_pred --------------hhccccCCCcceeehHHHHHHhcCC----------------------------------HHHHHHH
Confidence 1223 3589999999999983220 1344678
Q ss_pred HHhhhhhhccCceEEEEec
Q 040129 173 LNNRAKEIVPGGMIIITNP 191 (333)
Q Consensus 173 L~~Ra~EL~~GG~mvl~~~ 191 (333)
|+.=++-|+|||.++.+++
T Consensus 169 l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 169 LKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp HHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHhcCCCCEEEEEec
Confidence 9999999999999999986
No 99
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=95.41 E-value=0.013 Score=55.24 Aligned_cols=24 Identities=25% Similarity=0.679 Sum_probs=20.5
Q ss_pred HhHHHHHHhhhhhhccCceEEEEe
Q 040129 167 KDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 167 ~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
.||..|++--.+-|++||.+.+.=
T Consensus 241 tn~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 241 TNLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred ccHHHHHHHHHHHhccCceEEEEe
Confidence 477888888889999999998874
No 100
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=95.27 E-value=0.091 Score=42.13 Aligned_cols=102 Identities=21% Similarity=0.360 Sum_probs=58.8
Q ss_pred EEEEeecCCCCcccHHHHHH-------------HHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccce
Q 040129 32 IRLADCGCAVGPNTFNAMQD-------------LIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFF 98 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~~~-------------ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f 98 (333)
.+|+|.||++|.-++.+... .++..+......+ -...++++..|. ..+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~---~~~~~~~~~~D~-----~~~----------- 62 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNG---LDDRVEVIVGDA-----RDL----------- 62 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCT---TTTTEEEEESHH-----HHH-----------
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHcc---CCceEEEEECch-----hhc-----------
Confidence 58999999999988887743 2344444333321 112345555443 111
Q ss_pred eeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhh
Q 040129 99 VAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAK 178 (333)
Q Consensus 99 ~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~ 178 (333)
.+.++.+++|+++++--.+.....+.. -.++...|++.=.+
T Consensus 63 ---------~~~~~~~~~D~Iv~npP~~~~~~~~~~------------------------------~~~~~~~~~~~~~~ 103 (117)
T PF13659_consen 63 ---------PEPLPDGKFDLIVTNPPYGPRSGDKAA------------------------------LRRLYSRFLEAAAR 103 (117)
T ss_dssp ---------HHTCTTT-EEEEEE--STTSBTT----------------------------------GGCHHHHHHHHHHH
T ss_pred ---------hhhccCceeEEEEECCCCccccccchh------------------------------hHHHHHHHHHHHHH
Confidence 134677889999987555422111110 01255677888889
Q ss_pred hhccCceEEEEec
Q 040129 179 EIVPGGMIIITNP 191 (333)
Q Consensus 179 EL~~GG~mvl~~~ 191 (333)
=|+|||.+++..+
T Consensus 104 ~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 104 LLKPGGVLVFITP 116 (117)
T ss_dssp HEEEEEEEEEEEE
T ss_pred HcCCCeEEEEEeC
Confidence 9999999999864
No 101
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=95.15 E-value=0.056 Score=51.50 Aligned_cols=17 Identities=29% Similarity=0.532 Sum_probs=14.4
Q ss_pred EEEEeecCCCCcccHHH
Q 040129 32 IRLADCGCAVGPNTFNA 48 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~ 48 (333)
-+|+|+||++|..++.+
T Consensus 161 ~~VLDvGcGsG~lai~a 177 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAA 177 (288)
T ss_pred CEEEEeCCChhHHHHHH
Confidence 68999999999877554
No 102
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=95.05 E-value=0.11 Score=49.26 Aligned_cols=24 Identities=13% Similarity=0.264 Sum_probs=19.0
Q ss_pred hHHHHHHhhhhhhccCceEEEEec
Q 040129 168 DLERFLNNRAKEIVPGGMIIITNP 191 (333)
Q Consensus 168 D~~~FL~~Ra~EL~~GG~mvl~~~ 191 (333)
+...++..=.+-|+|||.+++.+.
T Consensus 222 ~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 222 ILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred HHHHHHHHHHHhccCCCEEEEEEC
Confidence 556667776788999999999884
No 103
>PRK00811 spermidine synthase; Provisional
Probab=94.93 E-value=0.15 Score=48.53 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=17.5
Q ss_pred CCcEEEEeecCCCCcccHHHH
Q 040129 29 SNTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~ 49 (333)
+++-+|+|+||++|..+..++
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l 95 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVL 95 (283)
T ss_pred CCCCEEEEEecCchHHHHHHH
Confidence 456799999999999887765
No 104
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=94.84 E-value=0.14 Score=47.29 Aligned_cols=56 Identities=20% Similarity=0.188 Sum_probs=44.7
Q ss_pred cCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEE
Q 040129 110 LFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIIT 189 (333)
Q Consensus 110 lfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~ 189 (333)
-|++.++|-++|-.|++||=..-+.... =++.+..|...=..-|++|++-|+.
T Consensus 107 pfrpGtFDg~ISISAvQWLcnA~~s~~~---------------------------P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 107 PFRPGTFDGVISISAVQWLCNADKSLHV---------------------------PKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred CCCCCccceEEEeeeeeeecccCccccC---------------------------hHHHHHHHhhhhhhhhccCceeEEE
Confidence 3889999999999999997665443221 1367888888888999999999999
Q ss_pred ecC
Q 040129 190 NPS 192 (333)
Q Consensus 190 ~~g 192 (333)
+--
T Consensus 160 fYp 162 (270)
T KOG1541|consen 160 FYP 162 (270)
T ss_pred ecc
Confidence 954
No 105
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=94.73 E-value=0.19 Score=46.80 Aligned_cols=24 Identities=17% Similarity=0.454 Sum_probs=18.8
Q ss_pred HhHHHHHHhhhhhhccCceEEEEe
Q 040129 167 KDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 167 ~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
.++..|++.=.+=|+|||.+++..
T Consensus 215 ~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 215 DFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred HHHHHHHHHHHHhcccCCEEEEEE
Confidence 455667777678899999999966
No 106
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=94.12 E-value=0.69 Score=44.80 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=18.5
Q ss_pred HHHHHhhhhhhccCceEEEEecCC
Q 040129 170 ERFLNNRAKEIVPGGMIIITNPSI 193 (333)
Q Consensus 170 ~~FL~~Ra~EL~~GG~mvl~~~gr 193 (333)
..+|+.=++-|+|||++++.++..
T Consensus 274 ~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 274 ERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred HHHHHHHHHHccCCcEEEEEEcCC
Confidence 445666668899999999998654
No 107
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=93.86 E-value=0.062 Score=49.98 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=14.3
Q ss_pred cEEEEeecCCCCcccHHH
Q 040129 31 TIRLADCGCAVGPNTFNA 48 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~ 48 (333)
.-+|+|+||++|..++.+
T Consensus 120 ~~~VLDiGcGsG~l~i~~ 137 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAA 137 (250)
T ss_pred CCEEEEeCCcHHHHHHHH
Confidence 468999999999766543
No 108
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=93.72 E-value=0.37 Score=48.67 Aligned_cols=114 Identities=16% Similarity=0.205 Sum_probs=64.5
Q ss_pred EEEEeecCCCCcccHHHHHH---------------HHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCcccc
Q 040129 32 IRLADCGCAVGPNTFNAMQD---------------LIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIH 96 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~~~---------------ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~ 96 (333)
-+|+|+||++|.-|+.+... -++.+++.....+ -..+++...|.. ++.
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g----~~~v~~~~~Da~--~l~----------- 301 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK----LSSIEIKIADAE--RLT----------- 301 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC----CCeEEEEECchh--hhh-----------
Confidence 58999999999998876532 2334444433322 112444444421 110
Q ss_pred ceeeccCcccccccCCCCceeEEEe---ccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHH
Q 040129 97 FFVAGVPGSFHKRLFPEKFLHLVHV---SYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFL 173 (333)
Q Consensus 97 ~f~~~vpgSFy~rlfP~~Sv~~~~S---s~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL 173 (333)
+ +.++++|.|++ .+++..+.+.|+.... .+++.. .+..+.-...|
T Consensus 302 ------------~-~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~---------------~~~~~~----~~l~~~Q~~iL 349 (431)
T PRK14903 302 ------------E-YVQDTFDRILVDAPCTSLGTARNHPEVLRR---------------VNKEDF----KKLSEIQLRIV 349 (431)
T ss_pred ------------h-hhhccCCEEEECCCCCCCccccCChHHHHh---------------CCHHHH----HHHHHHHHHHH
Confidence 0 12345788775 3456666666643321 012222 23334556778
Q ss_pred HhhhhhhccCceEEEEecCCC
Q 040129 174 NNRAKEIVPGGMIIITNPSIP 194 (333)
Q Consensus 174 ~~Ra~EL~~GG~mvl~~~gr~ 194 (333)
..=++-|+|||.||.......
T Consensus 350 ~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 350 SQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred HHHHHhcCCCCEEEEEECCCC
Confidence 888899999999998876643
No 109
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=93.58 E-value=0.7 Score=46.52 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=19.6
Q ss_pred HhHHHHHHhhhhhhccCceEEEEec
Q 040129 167 KDLERFLNNRAKEIVPGGMIIITNP 191 (333)
Q Consensus 167 ~D~~~FL~~Ra~EL~~GG~mvl~~~ 191 (333)
.....+|..=.+-|+|||+||....
T Consensus 349 ~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 349 ALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 4455678777789999999997764
No 110
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=93.49 E-value=0.16 Score=52.32 Aligned_cols=20 Identities=10% Similarity=0.197 Sum_probs=16.7
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
..+|+|+||++|..++.+..
T Consensus 139 ~~~VLDlG~GsG~iai~la~ 158 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLC 158 (506)
T ss_pred CCEEEEccCchhHHHHHHHH
Confidence 46899999999998886653
No 111
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=93.15 E-value=0.36 Score=44.09 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHH
Q 040129 7 TKDHIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 7 ~~~~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~ 49 (333)
..|.+...+-+.+... + -.++.|+||++|.+|..+.
T Consensus 56 s~P~~~a~~l~~L~l~------p-g~~VLeIGtGsGY~aAlla 91 (209)
T PF01135_consen 56 SAPSMVARMLEALDLK------P-GDRVLEIGTGSGYQAALLA 91 (209)
T ss_dssp --HHHHHHHHHHTTC-------T-T-EEEEES-TTSHHHHHHH
T ss_pred hHHHHHHHHHHHHhcC------C-CCEEEEecCCCcHHHHHHH
Confidence 4566666666666532 2 3799999999999997764
No 112
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=93.14 E-value=0.61 Score=47.05 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=15.7
Q ss_pred EEEEeecCCCCcccHHHH
Q 040129 32 IRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~ 49 (333)
-+|+|+||++|..++.+.
T Consensus 253 ~rVLDLGcGSG~IaiaLA 270 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVA 270 (423)
T ss_pred CEEEEEeChhhHHHHHHH
Confidence 389999999999988765
No 113
>PHA03411 putative methyltransferase; Provisional
Probab=93.08 E-value=0.4 Score=45.75 Aligned_cols=120 Identities=13% Similarity=0.129 Sum_probs=64.7
Q ss_pred EEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCcccccccC
Q 040129 32 IRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKRLF 111 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~rlf 111 (333)
-+|+|+||++|..++.+... .+..+|+..|+-. ++-.+.+..-+ + +..+-+.+.. +.
T Consensus 66 grVLDLGcGsGilsl~la~r-----------------~~~~~V~gVDisp-~al~~Ar~n~~--~--v~~v~~D~~e-~~ 122 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHR-----------------CKPEKIVCVELNP-EFARIGKRLLP--E--AEWITSDVFE-FE 122 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHh-----------------CCCCEEEEEECCH-HHHHHHHHhCc--C--CEEEECchhh-hc
Confidence 48999999999776654321 0123455555533 22222222100 0 1112233332 22
Q ss_pred CCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHH--hHHHHHHhhhhhhccCceEEEE
Q 040129 112 PEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAK--DLERFLNNRAKEIVPGGMIIIT 189 (333)
Q Consensus 112 P~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~--D~~~FL~~Ra~EL~~GG~mvl~ 189 (333)
+..++|+++|+-.++++..... .+ ...|..|.. ..+ .+..||+..+.=|+|+|...+.
T Consensus 123 ~~~kFDlIIsNPPF~~l~~~d~--~~--~~~~~GG~~----------------g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 123 SNEKFDVVISNPPFGKINTTDT--KD--VFEYTGGEF----------------EFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred ccCCCcEEEEcCCccccCchhh--hh--hhhhccCcc----------------ccccccHHHHHhhhHheecCCceEEEE
Confidence 3567999999999999643111 11 011111110 001 2578899999999999988888
Q ss_pred ecCCC
Q 040129 190 NPSIP 194 (333)
Q Consensus 190 ~~gr~ 194 (333)
+.|++
T Consensus 183 yss~~ 187 (279)
T PHA03411 183 YSGRP 187 (279)
T ss_pred Eeccc
Confidence 65543
No 114
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=93.05 E-value=2.8 Score=37.32 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=16.3
Q ss_pred CcEEEEeecCCCCcccHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~ 49 (333)
..-+|+|+||++|.-++.+.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a 59 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEAS 59 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHH
Confidence 34689999999998887654
No 115
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=92.56 E-value=0.99 Score=45.40 Aligned_cols=127 Identities=13% Similarity=0.104 Sum_probs=63.0
Q ss_pred cEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccc-cceeeccCccccc-
Q 040129 31 TIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEI-HFFVAGVPGSFHK- 108 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~-~~f~~~vpgSFy~- 108 (333)
.-+|.|+||+.|.-|+.+...+ . .-+|+-.|.-.+=-..+-+++.... .+-+..+.|.-.+
T Consensus 239 g~~VLDlcag~G~kt~~la~~~--------~---------~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~ 301 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELA--------P---------QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGP 301 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHc--------C---------CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccc
Confidence 3689999999999998765321 0 1124444442222222212221110 1111111111111
Q ss_pred -ccCCCCceeEEEe---ccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCc
Q 040129 109 -RLFPEKFLHLVHV---SYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGG 184 (333)
Q Consensus 109 -rlfP~~Sv~~~~S---s~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG 184 (333)
...+.+++|.+++ ++++.-+.+.|+... . .++..+. +..+.-..+|+.=++-|+|||
T Consensus 302 ~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~-------~-------~~~~~~~-----~l~~lQ~~lL~~a~~~LkpgG 362 (426)
T TIGR00563 302 SQWAENEQFDRILLDAPCSATGVIRRHPDIKW-------L-------RKPRDIA-----ELAELQSEILDAIWPLLKTGG 362 (426)
T ss_pred cccccccccCEEEEcCCCCCCcccccCcchhh-------c-------CCHHHHH-----HHHHHHHHHHHHHHHhcCCCc
Confidence 1125677898886 344555556664321 1 1122222 222333556777778899999
Q ss_pred eEEEEecCC
Q 040129 185 MIIITNPSI 193 (333)
Q Consensus 185 ~mvl~~~gr 193 (333)
+||.....-
T Consensus 363 ~lvystcs~ 371 (426)
T TIGR00563 363 TLVYATCSV 371 (426)
T ss_pred EEEEEeCCC
Confidence 999886554
No 116
>PLN03075 nicotianamine synthase; Provisional
Probab=92.41 E-value=0.61 Score=44.91 Aligned_cols=20 Identities=20% Similarity=0.087 Sum_probs=16.5
Q ss_pred CcEEEEeecCCCCcccHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~ 49 (333)
.+-+|+|+||+.||-|...+
T Consensus 123 ~p~~VldIGcGpgpltaiil 142 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVL 142 (296)
T ss_pred CCCEEEEECCCCcHHHHHHH
Confidence 56789999999998876654
No 117
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=92.37 E-value=0.13 Score=49.44 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHH
Q 040129 8 KDHIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 8 ~~~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~ 49 (333)
..+.-+++.++. .+.-+++|+||+||--|+.+.
T Consensus 149 T~lcL~~Le~~~---------~~g~~vlDvGcGSGILaIAa~ 181 (300)
T COG2264 149 TSLCLEALEKLL---------KKGKTVLDVGCGSGILAIAAA 181 (300)
T ss_pred HHHHHHHHHHhh---------cCCCEEEEecCChhHHHHHHH
Confidence 345555555433 346899999999999998876
No 118
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=91.91 E-value=2.1 Score=43.36 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=21.4
Q ss_pred HhHHHHHHhhhhhhccCceEEEEecCC
Q 040129 167 KDLERFLNNRAKEIVPGGMIIITNPSI 193 (333)
Q Consensus 167 ~D~~~FL~~Ra~EL~~GG~mvl~~~gr 193 (333)
+.-..+|..=++-|+|||+||......
T Consensus 354 ~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 354 GLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 445567888888899999999987554
No 119
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=91.41 E-value=0.96 Score=44.06 Aligned_cols=36 Identities=11% Similarity=0.207 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHHH
Q 040129 8 KDHIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 8 ~~~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~ 50 (333)
.|.+...+.+.+.. ++.-+|+|+||++|.+++.+..
T Consensus 65 ~p~l~a~ll~~L~i-------~~g~~VLDIG~GtG~~a~~LA~ 100 (322)
T PRK13943 65 QPSLMALFMEWVGL-------DKGMRVLEIGGGTGYNAAVMSR 100 (322)
T ss_pred cHHHHHHHHHhcCC-------CCCCEEEEEeCCccHHHHHHHH
Confidence 45555444444432 2246899999999999987653
No 120
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=91.33 E-value=1.3 Score=44.82 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=16.6
Q ss_pred EEEEeecCCCCcccHHHHH
Q 040129 32 IRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~~ 50 (333)
-+|+|+||++|.-|+.+.+
T Consensus 252 ~~VLDlgaG~G~~t~~la~ 270 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAE 270 (444)
T ss_pred CEEEEeCCCCCHHHHHHHH
Confidence 5899999999999987764
No 121
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=90.40 E-value=1.5 Score=39.91 Aligned_cols=55 Identities=24% Similarity=0.283 Sum_probs=28.7
Q ss_pred cEEEEeecCCCCcccHHHH---------------------HHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM---------------------QDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTL 87 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~---------------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~l 87 (333)
.-++.|+||+.|.-.+.+. ....+.+++.+...+ ..+.++++..-|.-.+||...
T Consensus 43 ~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g--~~~~~v~l~~gdfl~~~~~~~ 118 (205)
T PF08123_consen 43 DDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYG--KRPGKVELIHGDFLDPDFVKD 118 (205)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCT--B---EEEEECS-TTTHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhh--cccccceeeccCccccHhHhh
Confidence 4699999999998776554 222223333332221 234567777777666666554
No 122
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=90.19 E-value=2.7 Score=39.50 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=15.9
Q ss_pred CCcEEEEeecCCCCcccHHHH
Q 040129 29 SNTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~ 49 (333)
+++-+|+|+||++|..+..++
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll 91 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVL 91 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHH
Confidence 334599999999999765554
No 123
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=89.70 E-value=2.3 Score=39.16 Aligned_cols=110 Identities=18% Similarity=0.198 Sum_probs=64.0
Q ss_pred ceeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhh
Q 040129 97 FFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNR 176 (333)
Q Consensus 97 ~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~R 176 (333)
+|+.|-+.+--+ +|+.|+|.+.+..+|.= . . |=..-|+.=
T Consensus 129 ~fvva~ge~l~~--l~d~s~DtVV~TlvLCS--v-----e-------------------------------~~~k~L~e~ 168 (252)
T KOG4300|consen 129 RFVVADGENLPQ--LADGSYDTVVCTLVLCS--V-----E-------------------------------DPVKQLNEV 168 (252)
T ss_pred EEEeechhcCcc--cccCCeeeEEEEEEEec--c-----C-------------------------------CHHHHHHHH
Confidence 567776655432 28999999998776532 1 1 111224444
Q ss_pred hhhhccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEE
Q 040129 177 AKEIVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRI 256 (333)
Q Consensus 177 a~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I 256 (333)
.+=|+|||++++.=-|+..-+. ...+|+...+-+-.+..+|= + =--|.-+.|+++. |++
T Consensus 169 ~rlLRpgG~iifiEHva~~y~~-----~n~i~q~v~ep~~~~~~dGC---------~------ltrd~~e~Leda~-f~~ 227 (252)
T KOG4300|consen 169 RRLLRPGGRIIFIEHVAGEYGF-----WNRILQQVAEPLWHLESDGC---------V------LTRDTGELLEDAE-FSI 227 (252)
T ss_pred HHhcCCCcEEEEEecccccchH-----HHHHHHHHhchhhheeccce---------E------EehhHHHHhhhcc-ccc
Confidence 5889999999998777654221 22234433333333444441 1 1234555677776 888
Q ss_pred eEEEEeC-CCCC
Q 040129 257 EVMGLTN-PSPW 267 (333)
Q Consensus 257 ~~le~~~-p~~~ 267 (333)
.+.+.+. |+.|
T Consensus 228 ~~~kr~~~~ttw 239 (252)
T KOG4300|consen 228 DSCKRFNFGTTW 239 (252)
T ss_pred chhhcccCCceE
Confidence 8888776 5544
No 124
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=89.47 E-value=2.5 Score=39.71 Aligned_cols=26 Identities=15% Similarity=0.397 Sum_probs=19.6
Q ss_pred HhHHHHHHhhhhhhccCceEEEEecC
Q 040129 167 KDLERFLNNRAKEIVPGGMIIITNPS 192 (333)
Q Consensus 167 ~D~~~FL~~Ra~EL~~GG~mvl~~~g 192 (333)
+.-..+|+.=++=|+|||+||.....
T Consensus 176 ~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 176 ALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 44455788888889999999877543
No 125
>PLN02366 spermidine synthase
Probab=88.90 E-value=2.8 Score=40.50 Aligned_cols=21 Identities=14% Similarity=0.042 Sum_probs=16.1
Q ss_pred CCcEEEEeecCCCCcccHHHH
Q 040129 29 SNTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~ 49 (333)
+++-+|+|+||+.|..+..++
T Consensus 90 ~~pkrVLiIGgG~G~~~rell 110 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIA 110 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHH
Confidence 456799999999998654443
No 126
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=88.86 E-value=3.6 Score=41.51 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=19.3
Q ss_pred HhHHHHHHhhhhhhccCceEEEEec
Q 040129 167 KDLERFLNNRAKEIVPGGMIIITNP 191 (333)
Q Consensus 167 ~D~~~FL~~Ra~EL~~GG~mvl~~~ 191 (333)
+.-..+|..=++-|+|||+||....
T Consensus 361 ~~Q~~iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 361 PLQAELLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 4446678888889999999997653
No 127
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=88.66 E-value=1.2 Score=43.50 Aligned_cols=57 Identities=28% Similarity=0.448 Sum_probs=40.2
Q ss_pred cCccccccc---C--CCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhh
Q 040129 102 VPGSFHKRL---F--PEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNR 176 (333)
Q Consensus 102 vpgSFy~rl---f--P~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~R 176 (333)
++-+|+++| + ++-++|++=|=+|+|+-= .. ..-...+|+.=
T Consensus 178 ~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaF------et----------------------------ee~ar~~l~Nv 223 (389)
T KOG1975|consen 178 AADCFKERLMDLLEFKDPRFDIVSCQFAFHYAF------ET----------------------------EESARIALRNV 223 (389)
T ss_pred EeccchhHHHHhccCCCCCcceeeeeeeEeeee------cc----------------------------HHHHHHHHHHH
Confidence 345666554 3 555699999999999711 00 01224568899
Q ss_pred hhhhccCceEEEEecC
Q 040129 177 AKEIVPGGMIIITNPS 192 (333)
Q Consensus 177 a~EL~~GG~mvl~~~g 192 (333)
++-|+|||.|+-+++-
T Consensus 224 a~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 224 AKCLKPGGVFIGTIPD 239 (389)
T ss_pred HhhcCCCcEEEEecCc
Confidence 9999999999999864
No 128
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=88.42 E-value=2 Score=41.44 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=15.9
Q ss_pred EEEeecCCCCcccHHHHH
Q 040129 33 RLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 33 ~IaD~GCs~G~Ns~~~~~ 50 (333)
+|+|+||+-|+-++.+.+
T Consensus 161 ~vlDlGCG~Gvlg~~la~ 178 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAK 178 (300)
T ss_pred cEEEeCCCccHHHHHHHH
Confidence 999999999998887663
No 129
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=88.34 E-value=2.1 Score=39.97 Aligned_cols=70 Identities=19% Similarity=0.215 Sum_probs=39.8
Q ss_pred HHHhhhhhhccCceEEEEecCCCCCCCCccchhhHHH--HHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHH
Q 040129 172 FLNNRAKEIVPGGMIIITNPSIPDGMPFSEIANGLMY--NCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVE 249 (333)
Q Consensus 172 FL~~Ra~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~--~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie 249 (333)
|+++=++=++|||.|++.-.-|.- ..... -..+-+++ ++-.|--+ ... +-.++|+...+.
T Consensus 143 ~~~~c~~lvkP~G~lf~STinrt~--------ka~~~~i~~ae~vl~-~vP~gTH~---~~k------~irp~El~~~~~ 204 (243)
T COG2227 143 FLRACAKLVKPGGILFLSTINRTL--------KAYLLAIIGAEYVLR-IVPKGTHD---YRK------FIKPAELIRWLL 204 (243)
T ss_pred HHHHHHHHcCCCcEEEEeccccCH--------HHHHHHHHHHHHHHH-hcCCcchh---HHH------hcCHHHHHHhcc
Confidence 677778999999999998766532 11111 12223333 33334211 111 234678888777
Q ss_pred hCCcEEEeEEE
Q 040129 250 RNGNFRIEVMG 260 (333)
Q Consensus 250 ~~G~F~I~~le 260 (333)
..| +.+....
T Consensus 205 ~~~-~~~~~~~ 214 (243)
T COG2227 205 GAN-LKIIDRK 214 (243)
T ss_pred cCC-ceEEeec
Confidence 766 6766665
No 130
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=88.17 E-value=0.66 Score=41.75 Aligned_cols=111 Identities=19% Similarity=0.357 Sum_probs=57.5
Q ss_pred EEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCC--ccccc-eeeccCcccccc
Q 040129 33 RLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLP--QEIHF-FVAGVPGSFHKR 109 (333)
Q Consensus 33 ~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~--~~~~~-f~~~vpgSFy~r 109 (333)
.+.|+||+.|...+..... .|+..++--|.-.+=....-+.+. ...++ ++.+=...+...
T Consensus 20 l~lEIG~G~G~~l~~~A~~-----------------~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~ 82 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKR-----------------NPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRR 82 (195)
T ss_dssp EEEEET-TTSHHHHHHHHH-----------------STTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHH
T ss_pred eEEEecCCCCHHHHHHHHH-----------------CCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhh
Confidence 8999999999888766521 233444444443332222222111 11133 233334455677
Q ss_pred cCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEE
Q 040129 110 LFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIIT 189 (333)
Q Consensus 110 lfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~ 189 (333)
++|++||+-++-++.==| |+.-- .|-++. .++ ||..=++-|+|||.+.+.
T Consensus 83 ~~~~~~v~~i~i~FPDPW----pK~rH-------~krRl~----~~~---------------fl~~~~~~L~~gG~l~~~ 132 (195)
T PF02390_consen 83 LFPPGSVDRIYINFPDPW----PKKRH-------HKRRLV----NPE---------------FLELLARVLKPGGELYFA 132 (195)
T ss_dssp HSTTTSEEEEEEES---------SGGG-------GGGSTT----SHH---------------HHHHHHHHEEEEEEEEEE
T ss_pred cccCCchheEEEeCCCCC----cccch-------hhhhcC----Cch---------------HHHHHHHHcCCCCEEEEE
Confidence 899999999998887667 32211 011211 333 344555899999988776
Q ss_pred e
Q 040129 190 N 190 (333)
Q Consensus 190 ~ 190 (333)
-
T Consensus 133 T 133 (195)
T PF02390_consen 133 T 133 (195)
T ss_dssp E
T ss_pred e
Confidence 4
No 131
>PRK04457 spermidine synthase; Provisional
Probab=88.00 E-value=8 Score=36.34 Aligned_cols=21 Identities=10% Similarity=0.009 Sum_probs=16.2
Q ss_pred CCcEEEEeecCCCCcccHHHH
Q 040129 29 SNTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~ 49 (333)
+.+-+|+|+||+.|.-+..+.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~ 85 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIY 85 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHH
Confidence 345689999999998776554
No 132
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=87.57 E-value=1.3 Score=40.88 Aligned_cols=135 Identities=22% Similarity=0.383 Sum_probs=78.7
Q ss_pred CCcEEEEeecCCCCcccHHHH-------------HHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAM-------------QDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEI 95 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~-------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~ 95 (333)
.+.-+.+|.|++.|+-|-.++ ...++..++..... .+. -.
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~-----~~~----------------------v~ 106 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD-----NPR----------------------VG 106 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCG-----GCC----------------------EE
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhccc-----CCC----------------------cc
Confidence 467899999999999996553 44455444322110 001 11
Q ss_pred cceeeccCcccccccCCC-CceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHH
Q 040129 96 HFFVAGVPGSFHKRLFPE-KFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLN 174 (333)
Q Consensus 96 ~~f~~~vpgSFy~rlfP~-~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~ 174 (333)
++|..|.- ..-|. +..|++|.-|++-.|+. .|+-.||+
T Consensus 107 ~~~~~gLQ-----~f~P~~~~YDlIW~QW~lghLTD------------------------------------~dlv~fL~ 145 (218)
T PF05891_consen 107 EFYCVGLQ-----DFTPEEGKYDLIWIQWCLGHLTD------------------------------------EDLVAFLK 145 (218)
T ss_dssp EEEES-GG-----G----TT-EEEEEEES-GGGS-H------------------------------------HHHHHHHH
T ss_pred eEEecCHh-----hccCCCCcEeEEEehHhhccCCH------------------------------------HHHHHHHH
Confidence 34444442 22354 78999999888877543 79999999
Q ss_pred hhhhhhccCceEEEE-ecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCc
Q 040129 175 NRAKEIVPGGMIIIT-NPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGN 253 (333)
Q Consensus 175 ~Ra~EL~~GG~mvl~-~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~ 253 (333)
-=.+-|+|||.+|+= ..+....+ .+|.-. -...||.+.++.+++++|
T Consensus 146 RCk~~L~~~G~IvvKEN~~~~~~~------------------------------~~D~~D-sSvTRs~~~~~~lF~~AG- 193 (218)
T PF05891_consen 146 RCKQALKPNGVIVVKENVSSSGFD------------------------------EFDEED-SSVTRSDEHFRELFKQAG- 193 (218)
T ss_dssp HHHHHEEEEEEEEEEEEEESSSEE------------------------------EEETTT-TEEEEEHHHHHHHHHHCT-
T ss_pred HHHHhCcCCcEEEEEecCCCCCCc------------------------------ccCCcc-CeeecCHHHHHHHHHHcC-
Confidence 999999999998885 33322110 111111 125678899999999999
Q ss_pred EEEeEEEEeC
Q 040129 254 FRIEVMGLTN 263 (333)
Q Consensus 254 F~I~~le~~~ 263 (333)
++|.+-+.-.
T Consensus 194 l~~v~~~~Q~ 203 (218)
T PF05891_consen 194 LRLVKEEKQK 203 (218)
T ss_dssp -EEEEEEE-T
T ss_pred CEEEEecccc
Confidence 8887776553
No 133
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=86.81 E-value=1.8 Score=41.45 Aligned_cols=127 Identities=13% Similarity=0.167 Sum_probs=71.4
Q ss_pred EEEEeecCCCCcccHHHH--------------HHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccc
Q 040129 32 IRLADCGCAVGPNTFNAM--------------QDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHF 97 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~--------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~ 97 (333)
-.|+|+||++|.-|+.++ ...|.-..+.++... -..-|.|.++|+-+-=|+..=
T Consensus 150 ~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~---l~g~i~v~~~~me~d~~~~~~--------- 217 (328)
T KOG2904|consen 150 THILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK---LSGRIEVIHNIMESDASDEHP--------- 217 (328)
T ss_pred ceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh---hcCceEEEecccccccccccc---------
Confidence 379999999999999987 344555555554432 134688999998876665541
Q ss_pred eeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCC-ceeecCCCHHHHHHHHHHHHHhHHHHHHhh
Q 040129 98 FVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKG-RIHYAFAPEVVVKAYANQFAKDLERFLNNR 176 (333)
Q Consensus 98 f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg-~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~R 176 (333)
.+.+.+|+..|+ |+-+.+...+..... +.| .|+.....= .-.-.-+..|+..-
T Consensus 218 -------------l~~~~~dllvsN---------PPYI~~dD~~~l~~eV~~y---Ep~lALdGg-~eG~~~~~~~~~~a 271 (328)
T KOG2904|consen 218 -------------LLEGKIDLLVSN---------PPYIRKDDNRQLKPEVRLY---EPKLALDGG-LEGYDNLVHYWLLA 271 (328)
T ss_pred -------------cccCceeEEecC---------CCcccccchhhcCchheec---Cchhhhccc-cchhHHHHHHHHhh
Confidence 455667777775 333322111000000 000 000000000 00012244556666
Q ss_pred hhhhccCceEEEEecCCCCC
Q 040129 177 AKEIVPGGMIIITNPSIPDG 196 (333)
Q Consensus 177 a~EL~~GG~mvl~~~gr~~~ 196 (333)
.+=|+|||.+++...+++..
T Consensus 272 ~R~Lq~gg~~~le~~~~~~~ 291 (328)
T KOG2904|consen 272 TRMLQPGGFEQLELVERKEH 291 (328)
T ss_pred HhhcccCCeEEEEecccccC
Confidence 67899999999999988543
No 134
>PRK03612 spermidine synthase; Provisional
Probab=86.16 E-value=4.5 Score=41.89 Aligned_cols=21 Identities=14% Similarity=0.090 Sum_probs=16.7
Q ss_pred CCcEEEEeecCCCCcccHHHH
Q 040129 29 SNTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~ 49 (333)
+++-+|+|+||++|.-+..++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll 316 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVL 316 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHH
Confidence 446789999999998776655
No 135
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=85.82 E-value=2.2 Score=40.10 Aligned_cols=24 Identities=25% Similarity=0.666 Sum_probs=21.1
Q ss_pred HhHHHHHHhhhhhhccCceEEEEe
Q 040129 167 KDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 167 ~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
..+.+|++.-+.=|.|||+||+.=
T Consensus 186 ~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 186 DGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred HHHHHHHHHHHHhhCcCcEEEEcC
Confidence 578889999999999999999863
No 136
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=85.44 E-value=1.8 Score=44.69 Aligned_cols=115 Identities=13% Similarity=0.150 Sum_probs=61.8
Q ss_pred CCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCc--cccceeeccCccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQ--EIHFFVAGVPGSF 106 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~--~~~~f~~~vpgSF 106 (333)
.+.-.+.|+||+.|...+..... .|+..++--|.-.+=...+-+.... ..++.+..--..+
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~-----------------~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~ 408 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKM-----------------NPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDL 408 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHh-----------------CCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence 34578999999999988766521 1222333333322211111111100 1122222112223
Q ss_pred ccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceE
Q 040129 107 HKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMI 186 (333)
Q Consensus 107 y~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~m 186 (333)
..+.||++|||-+|-++.=-| |+.-. .|-++. .++ ||+.=+.-|+|||.+
T Consensus 409 ~~~~~~~~sv~~i~i~FPDPW----pKkrh-------~krRl~----~~~---------------fl~~~~~~Lk~gG~i 458 (506)
T PRK01544 409 ILNDLPNNSLDGIYILFPDPW----IKNKQ-------KKKRIF----NKE---------------RLKILQDKLKDNGNL 458 (506)
T ss_pred HHHhcCcccccEEEEECCCCC----CCCCC-------cccccc----CHH---------------HHHHHHHhcCCCCEE
Confidence 456789999999999988888 43221 122221 333 344444889999999
Q ss_pred EEEe
Q 040129 187 IITN 190 (333)
Q Consensus 187 vl~~ 190 (333)
.+.-
T Consensus 459 ~~~T 462 (506)
T PRK01544 459 VFAS 462 (506)
T ss_pred EEEc
Confidence 8764
No 137
>PHA03412 putative methyltransferase; Provisional
Probab=84.09 E-value=0.6 Score=43.63 Aligned_cols=63 Identities=21% Similarity=0.178 Sum_probs=38.4
Q ss_pred cEEEEeecCCCCcccHHHHHHHHH--------------HHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCcccc
Q 040129 31 TIRLADCGCAVGPNTFNAMQDLIE--------------IVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIH 96 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~ii~--------------~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~ 96 (333)
.-+|+|+||++|.-++.+...+.. +++. .+. ..+.+.+...|+-..+++.-|..+=.+++
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~-Ar~-----n~~~~~~~~~D~~~~~~~~~FDlIIsNPP 123 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKL-GKR-----IVPEATWINADALTTEFDTLFDMAISNPP 123 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHH-HHh-----hccCCEEEEcchhcccccCCccEEEECCC
Confidence 469999999999998877654210 0111 111 12457788888876666555666644445
Q ss_pred cee
Q 040129 97 FFV 99 (333)
Q Consensus 97 ~f~ 99 (333)
|+.
T Consensus 124 Y~~ 126 (241)
T PHA03412 124 FGK 126 (241)
T ss_pred CCC
Confidence 554
No 138
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=82.48 E-value=2.2 Score=40.22 Aligned_cols=82 Identities=24% Similarity=0.291 Sum_probs=54.3
Q ss_pred ceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEecCCC
Q 040129 115 FLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITNPSIP 194 (333)
Q Consensus 115 Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~gr~ 194 (333)
..|.+.|+++|.=.++-++ .| .+=|++=+.=|||||.|++......
T Consensus 158 ~~D~v~s~fcLE~a~~d~~--------------------------~y--------~~al~ni~~lLkpGG~Lil~~~l~~ 203 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDLD--------------------------EY--------RRALRNISSLLKPGGHLILAGVLGS 203 (256)
T ss_dssp SEEEEEEESSHHHH-SSHH--------------------------HH--------HHHHHHHHTTEEEEEEEEEEEESS-
T ss_pred chhhhhhhHHHHHHcCCHH--------------------------HH--------HHHHHHHHHHcCCCcEEEEEEEcCc
Confidence 5999999999987665321 12 2225555688999999999876432
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEE
Q 040129 195 DGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGL 261 (333)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~ 261 (333)
+. .. + | .-.+|.+.-+.+.++++|+++| |.|+..+.
T Consensus 204 t~---Y~-----------------v--G--------~~~F~~l~l~ee~v~~al~~aG-~~i~~~~~ 239 (256)
T PF01234_consen 204 TY---YM-----------------V--G--------GHKFPCLPLNEEFVREALEEAG-FDIEDLEK 239 (256)
T ss_dssp SE---EE-----------------E--T--------TEEEE---B-HHHHHHHHHHTT-EEEEEEEG
T ss_pred ee---EE-----------------E--C--------CEecccccCCHHHHHHHHHHcC-CEEEeccc
Confidence 21 00 0 1 1247888889999999999999 99999883
No 139
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=82.00 E-value=18 Score=35.64 Aligned_cols=152 Identities=23% Similarity=0.305 Sum_probs=91.6
Q ss_pred CcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCcccccc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKR 109 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~r 109 (333)
..-..+|.|-+.|..+=.+++ +| |.+..+-=|+|.=+-..-+-. |. +-=|.|-+++-
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~--------~f---------p~ik~infdlp~v~~~a~~~~-~g-----V~~v~gdmfq~ 233 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLS--------KY---------PHIKGINFDLPFVLAAAPYLA-PG-----VEHVAGDMFQD 233 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHH--------hC---------CCCceeecCHHHHHhhhhhhc-CC-----cceeccccccc
Confidence 467889999999987744442 22 445555555553222221110 11 55677888888
Q ss_pred cCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEE
Q 040129 110 LFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIIT 189 (333)
Q Consensus 110 lfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~ 189 (333)
.|+.- .+|.-|.||- +.| +|...||+.=.+-|.|||.+++.
T Consensus 234 -~P~~d--aI~mkWiLhd-------wtD-----------------------------edcvkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 234 -TPKGD--AIWMKWILHD-------WTD-----------------------------EDCVKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred -CCCcC--eEEEEeeccc-------CCh-----------------------------HHHHHHHHHHHHhCCCCCEEEEE
Confidence 88876 8888888873 123 78999999999999999999887
Q ss_pred ecCCCCCCCCccc--hhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEE
Q 040129 190 NPSIPDGMPFSEI--ANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGL 261 (333)
Q Consensus 190 ~~gr~~~~~~~~~--~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~ 261 (333)
=.-.+++...... ......+++..+.. +-| --++.+|++..+.++| |.+-..-.
T Consensus 275 E~V~p~e~~~dd~~s~v~~~~d~lm~~~~---~~G--------------kert~~e~q~l~~~~g-F~~~~~~~ 330 (342)
T KOG3178|consen 275 ENVTPEEDKFDDIDSSVTRDMDLLMLTQT---SGG--------------KERTLKEFQALLPEEG-FPVCMVAL 330 (342)
T ss_pred eccCCCCCCccccccceeehhHHHHHHHh---ccc--------------eeccHHHHHhcchhhc-CceeEEEe
Confidence 3222211111110 11112233332221 224 3578999999999999 87654443
No 140
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=81.88 E-value=3.8 Score=40.25 Aligned_cols=93 Identities=17% Similarity=0.283 Sum_probs=60.9
Q ss_pred CcEEEEeecCCCCcccHHHH------------HHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccc
Q 040129 30 NTIRLADCGCAVGPNTFNAM------------QDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHF 97 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~ 97 (333)
+.-+|.|.||++|--|+... +.|++..++....++. .-
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~-------------------~~----------- 109 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGL-------------------ED----------- 109 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCc-------------------cc-----------
Confidence 45789999999999999876 5555554444433221 11
Q ss_pred eeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhh
Q 040129 98 FVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRA 177 (333)
Q Consensus 98 f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra 177 (333)
-+-.+.|.=-+-.+|-..||++.|-|-=+||-. +.=+.+.|-+|-
T Consensus 110 ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~-----------------------------------EsMldsVl~ARd 154 (346)
T KOG1499|consen 110 VITVIKGKVEDIELPVEKVDIIVSEWMGYFLLY-----------------------------------ESMLDSVLYARD 154 (346)
T ss_pred eEEEeecceEEEecCccceeEEeehhhhHHHHH-----------------------------------hhhhhhhhhhhh
Confidence 122233333344567778999999877777542 123455588999
Q ss_pred hhhccCceEE
Q 040129 178 KEIVPGGMII 187 (333)
Q Consensus 178 ~EL~~GG~mv 187 (333)
+=|+|||.++
T Consensus 155 kwL~~~G~i~ 164 (346)
T KOG1499|consen 155 KWLKEGGLIY 164 (346)
T ss_pred hccCCCceEc
Confidence 9999999986
No 141
>PRK07402 precorrin-6B methylase; Provisional
Probab=81.12 E-value=4.8 Score=35.61 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=16.2
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
.-+|+|+||++|..++.+.
T Consensus 41 ~~~VLDiG~G~G~~~~~la 59 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAG 59 (196)
T ss_pred CCEEEEeCCCCCHHHHHHH
Confidence 3589999999999988764
No 142
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=80.25 E-value=2.8 Score=36.30 Aligned_cols=20 Identities=15% Similarity=0.117 Sum_probs=17.4
Q ss_pred EEEEeecCCCCcccHHHHHH
Q 040129 32 IRLADCGCAVGPNTFNAMQD 51 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~~~ 51 (333)
-+|+|+||++|..|..+++.
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~ 34 (169)
T smart00650 15 DTVLEIGPGKGALTEELLER 34 (169)
T ss_pred CEEEEECCCccHHHHHHHhc
Confidence 48999999999999988753
No 143
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=79.82 E-value=3.7 Score=38.67 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=33.7
Q ss_pred cEEEEeecCCCCcccHHHHH------------HHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ------------DLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNT 86 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~------------~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~ 86 (333)
.-+|+|+||++|..|..+.+ ..++.+++... .+.+++...|...-++..
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~-------~~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA-------EDNLTIIEGDALKVDLSE 103 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc-------cCceEEEEChhhcCCHHH
Confidence 35899999999999988875 34444443321 145788888877666544
No 144
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=79.06 E-value=19 Score=35.10 Aligned_cols=39 Identities=8% Similarity=-0.067 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHHHHHH
Q 040129 9 DHIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAMQDLI 53 (333)
Q Consensus 9 ~~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii 53 (333)
.+|++-..++.... +...+|.||||++|.=|-.+++.+.
T Consensus 61 ~iL~~~~~~Ia~~i------~~~~~lIELGsG~~~Kt~~LL~aL~ 99 (319)
T TIGR03439 61 EILKKHSSDIAASI------PSGSMLVELGSGNLRKVGILLEALE 99 (319)
T ss_pred HHHHHHHHHHHHhc------CCCCEEEEECCCchHHHHHHHHHHH
Confidence 35555444444322 3346899999999998887776553
No 145
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=77.34 E-value=4 Score=36.96 Aligned_cols=51 Identities=20% Similarity=0.256 Sum_probs=36.0
Q ss_pred CcEEEEeecCCCCcccHHHH-------------HHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAM-------------QDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTL 87 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~-------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~l 87 (333)
+.-+|+|+||++|.-++... ...+++.++.+.... -.+.++-.|.- ||+.-
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~-----g~v~f~~~dv~--~~~~~ 108 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL-----GDVEFVVADVS--DFRGK 108 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC-----CceEEEEcchh--hcCCc
Confidence 34579999999999999875 577788887776532 34666666653 45544
No 146
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=76.85 E-value=63 Score=29.89 Aligned_cols=53 Identities=25% Similarity=0.522 Sum_probs=34.6
Q ss_pred cccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEE
Q 040129 108 KRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMII 187 (333)
Q Consensus 108 ~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mv 187 (333)
..++|++|||=++=++.==| |+.-- +|.++- .++ ||+.=++-|+|||.+.
T Consensus 112 ~~~~~~~sl~~I~i~FPDPW----pKkRH-------~KRRl~----~~~---------------fl~~~a~~Lk~gG~l~ 161 (227)
T COG0220 112 DYLIPDGSLDKIYINFPDPW----PKKRH-------HKRRLT----QPE---------------FLKLYARKLKPGGVLH 161 (227)
T ss_pred HhcCCCCCeeEEEEECCCCC----CCccc-------cccccC----CHH---------------HHHHHHHHccCCCEEE
Confidence 45567779999998887777 44322 233332 333 4444458999999998
Q ss_pred EEe
Q 040129 188 ITN 190 (333)
Q Consensus 188 l~~ 190 (333)
+.-
T Consensus 162 ~aT 164 (227)
T COG0220 162 FAT 164 (227)
T ss_pred EEe
Confidence 865
No 147
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=76.84 E-value=19 Score=38.73 Aligned_cols=18 Identities=11% Similarity=0.060 Sum_probs=16.6
Q ss_pred EEEEeecCCCCcccHHHH
Q 040129 32 IRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~ 49 (333)
-+|+|+||.+|.-|+.+.
T Consensus 540 ~rVLDlf~gtG~~sl~aa 557 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAA 557 (702)
T ss_pred CeEEEcCCCCCHHHHHHH
Confidence 589999999999999887
No 148
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=76.16 E-value=36 Score=34.07 Aligned_cols=26 Identities=12% Similarity=0.253 Sum_probs=18.6
Q ss_pred HHHhHHHHHHhhhhhhccCceEEEEe
Q 040129 165 FAKDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 165 ~~~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
..+++..+++.=.+=|+|||.+++.-
T Consensus 314 ~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 314 ACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 34566666666667889999998654
No 149
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=73.58 E-value=7.9 Score=36.10 Aligned_cols=20 Identities=15% Similarity=0.021 Sum_probs=17.7
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
.-+|.|+||+.|..|..+..
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~ 49 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAK 49 (258)
T ss_pred cCeEEEEeCccCHHHHHHHH
Confidence 46899999999999998875
No 150
>PRK01581 speE spermidine synthase; Validated
Probab=72.68 E-value=21 Score=35.65 Aligned_cols=21 Identities=14% Similarity=0.064 Sum_probs=15.8
Q ss_pred CCcEEEEeecCCCCcccHHHH
Q 040129 29 SNTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~ 49 (333)
+++-+|+++||++|.....++
T Consensus 149 ~~PkrVLIIGgGdG~tlrelL 169 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVL 169 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHH
Confidence 556799999999998544444
No 151
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=70.18 E-value=52 Score=29.95 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=22.8
Q ss_pred hhhhhHHHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHH
Q 040129 4 TNVTKDHIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 4 ~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~ 49 (333)
...+-.+|.+.|. .+... ...-+|.||||+.|.--..+.
T Consensus 48 e~riv~wl~d~~~-~~rv~------~~A~~VlDLGtGNG~~L~~L~ 86 (227)
T KOG1271|consen 48 EERIVDWLKDLIV-ISRVS------KQADRVLDLGTGNGHLLFQLA 86 (227)
T ss_pred HHHHHHHHHhhhh-hhhhc------ccccceeeccCCchHHHHHHH
Confidence 3444556666555 33322 223399999999986544443
No 152
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=69.78 E-value=12 Score=36.36 Aligned_cols=22 Identities=5% Similarity=0.086 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHhCCcEEEeEEE
Q 040129 239 CPPGEFGAVVERNGNFRIEVMG 260 (333)
Q Consensus 239 ps~~E~~~~ie~~G~F~I~~le 260 (333)
.+.+++.+.+++.|-=.+...|
T Consensus 271 ~~l~~l~~~L~~~~~~~~~~~e 292 (321)
T PRK11727 271 ENLPPLYRALKKVGAVEVKTIE 292 (321)
T ss_pred CCHHHHHHHHHHcCCceEEEEE
Confidence 4889999999998843444444
No 153
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=69.18 E-value=15 Score=34.06 Aligned_cols=20 Identities=15% Similarity=0.099 Sum_probs=17.3
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
.-+|+|+||+.|.-|..+.+
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~ 49 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLK 49 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHH
Confidence 46899999999999988763
No 154
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=68.40 E-value=28 Score=30.39 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=23.2
Q ss_pred CCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCC
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSS 81 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~ 81 (333)
....+|.+|||++|--++.+... . ..-.|+++|+|.
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~--------~---------~~~~Vv~TD~~~ 79 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKL--------F---------GAARVVLTDYNE 79 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT------------------T-SEEEEEE-S-
T ss_pred cCCceEEEECCccchhHHHHHhc--------c---------CCceEEEeccch
Confidence 44579999999999888776532 0 124588899876
No 155
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=66.84 E-value=54 Score=31.15 Aligned_cols=69 Identities=22% Similarity=0.422 Sum_probs=40.7
Q ss_pred CcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCC--------chH--HHhhcCCccc--cc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSN--------DFN--TLFTSLPQEI--HF 97 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~N--------DFn--~lF~~l~~~~--~~ 97 (333)
++++|=--|||+|-=.-.+.-.+.+.... ..+..++|+-.|.-.. -+. .+++.+|... +|
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~--------~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ry 167 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGK--------LAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRY 167 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhcc--------ccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhh
Confidence 68999999999997655444333333221 1245799999997542 121 2334444332 66
Q ss_pred eeeccCccc
Q 040129 98 FVAGVPGSF 106 (333)
Q Consensus 98 f~~~vpgSF 106 (333)
|.-+.+|+|
T Consensus 168 F~~~~~~~y 176 (268)
T COG1352 168 FERGGDGSY 176 (268)
T ss_pred EeecCCCcE
Confidence 766666644
No 156
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=65.87 E-value=5.5 Score=38.16 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=39.2
Q ss_pred cCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEE
Q 040129 110 LFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIIT 189 (333)
Q Consensus 110 lfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~ 189 (333)
.+++.|+|.+.|.+.+||||.--.. ..+ |+-=.++++|||.+.+.
T Consensus 98 p~~~~s~d~~lsiavihhlsT~~RR--------------------~~~---------------l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 98 PFREESFDAALSIAVIHHLSTRERR--------------------ERA---------------LEELLRVLRPGGNALVY 142 (293)
T ss_pred CCCCCccccchhhhhhhhhhhHHHH--------------------HHH---------------HHHHHHHhcCCCceEEE
Confidence 4788999999999999999873211 112 22223899999999999
Q ss_pred ecCCCCCCC
Q 040129 190 NPSIPDGMP 198 (333)
Q Consensus 190 ~~gr~~~~~ 198 (333)
..+..-...
T Consensus 143 vwa~~q~~~ 151 (293)
T KOG1331|consen 143 VWALEQHQS 151 (293)
T ss_pred EehhhccCc
Confidence 888765443
No 157
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=65.62 E-value=6.2 Score=36.50 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=18.1
Q ss_pred CcEEEEeecCCCCcccHHHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAMQD 51 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ 51 (333)
+.-+++|+||++|.-|..+++.
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ 96 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK 96 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc
Confidence 4468999999999999877643
No 158
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=65.61 E-value=19 Score=32.53 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=15.8
Q ss_pred EEEEeecCCCCcccHHHH
Q 040129 32 IRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~ 49 (333)
-+++|+||++|.-++.++
T Consensus 55 ~~vLDl~~GsG~l~l~~l 72 (199)
T PRK10909 55 ARCLDCFAGSGALGLEAL 72 (199)
T ss_pred CEEEEcCCCccHHHHHHH
Confidence 589999999999998765
No 159
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=64.52 E-value=2.8 Score=34.53 Aligned_cols=24 Identities=29% Similarity=0.642 Sum_probs=19.9
Q ss_pred HhHHHHHHhhhhhhccCceEEEEe
Q 040129 167 KDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 167 ~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
..+.+|++.=+.-|+|||+||+.-
T Consensus 21 ~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 21 EGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred HHHHHHHHHHHHhhCCCCEEEEeC
Confidence 567777887889999999999985
No 160
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=63.26 E-value=7.2 Score=37.56 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHH
Q 040129 7 TKDHIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 7 ~~~~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~ 49 (333)
+..+.-+++.++.. + .-+|.|+||+||--++.+.
T Consensus 147 TT~lcl~~l~~~~~--------~-g~~vLDvG~GSGILaiaA~ 180 (295)
T PF06325_consen 147 TTRLCLELLEKYVK--------P-GKRVLDVGCGSGILAIAAA 180 (295)
T ss_dssp HHHHHHHHHHHHSS--------T-TSEEEEES-TTSHHHHHHH
T ss_pred HHHHHHHHHHHhcc--------C-CCEEEEeCCcHHHHHHHHH
Confidence 34455566655431 1 2499999999999988876
No 161
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=60.31 E-value=21 Score=34.18 Aligned_cols=51 Identities=18% Similarity=0.262 Sum_probs=35.5
Q ss_pred cEEEEeecCCCCcccHHHHH------------HHHHHHHHHhhhcCCCCCCCcceEEecCCCCCch
Q 040129 31 TIRLADCGCAVGPNTFNAMQ------------DLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDF 84 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~------------~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDF 84 (333)
.-+|.|+||+.|.-|..++. ..++.+++.+...+ ..+.++++..|....|+
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~---~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSP---LASKLEVIEGDALKTEF 99 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcC---CCCcEEEEECCHhhhcc
Confidence 35899999999999988874 45666666554321 13468888888766554
No 162
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=59.61 E-value=12 Score=31.54 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=19.5
Q ss_pred CCCcEEEEeecCCCCcccHHHHH
Q 040129 28 SSNTIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 28 ~~~~~~IaD~GCs~G~Ns~~~~~ 50 (333)
...+.+|.|+||+.|.-|..+..
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~ 45 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAH 45 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHH
Confidence 35689999999999999987764
No 163
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=59.30 E-value=30 Score=33.20 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=17.2
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
.-+|+|+||++|..++.+.+
T Consensus 174 ~~~VLDl~cG~G~~sl~la~ 193 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCAT 193 (315)
T ss_pred CCEEEEccCCCCHHHHHHHh
Confidence 36899999999999988773
No 164
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=58.79 E-value=9.7 Score=35.51 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=17.0
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
..+|+|+||++|.-++.+..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~ 106 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAA 106 (251)
T ss_pred CCEEEEecCchHHHHHHHHH
Confidence 46899999999999987763
No 165
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=58.04 E-value=6.8 Score=34.94 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCH
Q 040129 205 GLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPP 241 (333)
Q Consensus 205 ~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~ 241 (333)
+.+...+.+.|.+||++|+|+-|++.+-|+=|-|||.
T Consensus 39 ~IVl~tVKd~lQqlVDDgvV~~EK~GtsN~YWsF~s~ 75 (209)
T COG5124 39 QIVLMTVKDLLQQLVDDGVVSVEKCGTSNIYWSFKSQ 75 (209)
T ss_pred ccHHHHHHHHHHHHhhcCceeeeeeccceeEEecchH
Confidence 3466788999999999999999999999999999974
No 166
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=57.58 E-value=8.1 Score=39.38 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=16.8
Q ss_pred CcEEEEeecCCCCcccHHHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAMQD 51 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ 51 (333)
+..+|.|+||++|+-+..+++.
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A 207 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQA 207 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHT
T ss_pred cceEEEEeCCCccHHHHHHHHH
Confidence 3589999999999999887754
No 167
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=57.28 E-value=29 Score=35.01 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=16.3
Q ss_pred EEEEeecCCCCcccHHHH
Q 040129 32 IRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~ 49 (333)
-+|+|+||++|..|+.+.
T Consensus 299 ~~VLDlgcGtG~~sl~la 316 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLA 316 (443)
T ss_pred CEEEEEeccCCHHHHHHH
Confidence 589999999999998876
No 168
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=57.15 E-value=11 Score=32.84 Aligned_cols=38 Identities=21% Similarity=0.117 Sum_probs=26.1
Q ss_pred CCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCC
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSN 82 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~N 82 (333)
++..+++|+|||.|.-|-.+++.. .+.-.|+-.|+...
T Consensus 22 ~~~~~vlDlG~aPGGws~~~~~~~----------------~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 22 GKGFTVLDLGAAPGGWSQVLLQRG----------------GPAGRVVAVDLGPM 59 (181)
T ss_dssp TTTEEEEEET-TTSHHHHHHHTST----------------TTEEEEEEEESSST
T ss_pred ccccEEEEcCCcccceeeeeeecc----------------cccceEEEEecccc
Confidence 367999999999999886555322 13455777777665
No 169
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=53.44 E-value=7.6 Score=34.87 Aligned_cols=34 Identities=18% Similarity=0.124 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCH
Q 040129 208 YNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPP 241 (333)
Q Consensus 208 ~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~ 241 (333)
-..+.+++..||+||+|.-|++-+-|+=|-|||.
T Consensus 29 ~~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~ 62 (188)
T PF03962_consen 29 SMSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQ 62 (188)
T ss_pred hhhHHHHHHHHhccccchhhhccCeeEEEecChH
Confidence 4578899999999999999999999999999985
No 170
>PLN02823 spermine synthase
Probab=53.36 E-value=1e+02 Score=30.20 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=16.2
Q ss_pred CCcEEEEeecCCCCcccHHHH
Q 040129 29 SNTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~ 49 (333)
+++-+|+-+|++.|..+..++
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l 122 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVL 122 (336)
T ss_pred CCCCEEEEECCCchHHHHHHH
Confidence 456689999999997765554
No 171
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=53.15 E-value=17 Score=28.20 Aligned_cols=43 Identities=16% Similarity=0.304 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHH
Q 040129 206 LMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVE 249 (333)
Q Consensus 206 ~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie 249 (333)
.+...+..+|+.|...|.++++|-|....|.+.|+. ..+.+|+
T Consensus 11 rl~~~V~~~Ld~ll~~G~is~~Ecd~Ir~p~~T~sq-qARrLLD 53 (81)
T cd08788 11 RLQHHVDGALELLLTRGFFSSYDCDEIRLPIFTPSQ-QARRLLD 53 (81)
T ss_pred HHHHHHHHHHHHHHHcCCccHhhcchhhcCCCChHH-HHHHHHH
Confidence 345678899999999999999999999999998874 4555554
No 172
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=53.11 E-value=24 Score=33.38 Aligned_cols=52 Identities=21% Similarity=0.278 Sum_probs=42.2
Q ss_pred cEEEEeecCCCCcccHHHH------------HHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHh
Q 040129 31 TIRLADCGCAVGPNTFNAM------------QDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLF 88 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF 88 (333)
.-+|.++|++.|.-|..++ ..++..++++.. ....++|+..|-=.=||..++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~------~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA------PYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc------cccceEEEeCchhcCcchhhc
Confidence 5789999999999999998 456666666543 245799999999999999875
No 173
>PRK04148 hypothetical protein; Provisional
Probab=52.32 E-value=45 Score=28.36 Aligned_cols=47 Identities=9% Similarity=0.084 Sum_probs=29.1
Q ss_pred CcEEEEeecCCCCc-ccHHHHH------------HHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHH
Q 040129 30 NTIRLADCGCAVGP-NTFNAMQ------------DLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTL 87 (333)
Q Consensus 30 ~~~~IaD~GCs~G~-Ns~~~~~------------~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~l 87 (333)
+..+|+|+||+.|. .+..+.+ ..++.+++ .-.+++..|+-..|+.--
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~-----------~~~~~v~dDlf~p~~~~y 75 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKK-----------LGLNAFVDDLFNPNLEIY 75 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------hCCeEEECcCCCCCHHHH
Confidence 35789999999997 4443332 22222221 135788888888887643
No 174
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=50.89 E-value=1.1e+02 Score=29.02 Aligned_cols=144 Identities=16% Similarity=0.175 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHh
Q 040129 9 DHIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLF 88 (333)
Q Consensus 9 ~~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF 88 (333)
..|.+-+.+++. ....-+|.|-.|++|.--+.++..+.+. ... .++.+++-.|.-. ..-..
T Consensus 32 ~~i~~l~~~~~~-------~~~~~~VlDPacGsG~fL~~~~~~i~~~----~~~------~~~~~i~G~ei~~--~~~~l 92 (311)
T PF02384_consen 32 REIVDLMVKLLN-------PKKGDSVLDPACGSGGFLVAAMEYIKEK----RNK------IKEINIYGIEIDP--EAVAL 92 (311)
T ss_dssp HHHHHHHHHHHT-------T-TTEEEEETT-TTSHHHHHHHHHHHTC----HHH------HCCEEEEEEES-H--HHHHH
T ss_pred HHHHHHHHhhhh-------ccccceeechhhhHHHHHHHHHHhhccc----ccc------cccceeEeecCcH--HHHHH
Confidence 344445555552 2345789999999998777666544433 111 2457777666622 11111
Q ss_pred hc----CCcc-ccceeeccCcccccccCC-CCceeEEEecc--ccc-cccCCCccccCCCCCCCCCCceeecCCCHHHHH
Q 040129 89 TS----LPQE-IHFFVAGVPGSFHKRLFP-EKFLHLVHVSY--ALH-WLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVK 159 (333)
Q Consensus 89 ~~----l~~~-~~~f~~~vpgSFy~rlfP-~~Sv~~~~Ss~--alH-WLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ 159 (333)
.. +... ....-...+-+|-...+. ...+|+++++= ... | ....+... ..|.++ .....
T Consensus 93 a~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~---~~~~~~~~--~~~~~~---~~~~~----- 159 (311)
T PF02384_consen 93 AKLNLLLHGIDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEW---KDEELEKD--ERFKKY---FPPKS----- 159 (311)
T ss_dssp HHHHHHHTTHHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES----STGGGCTT--CCCTTC---SSSTT-----
T ss_pred HHhhhhhhccccccccccccccccccccccccccccccCCCCcccccc---cccccccc--cccccc---CCCcc-----
Confidence 11 1110 111123333445555555 78899999873 222 4 11111110 011111 00000
Q ss_pred HHHHHHHHhHHHHHHhhhhhhccCceEEEEec
Q 040129 160 AYANQFAKDLERFLNNRAKEIVPGGMIIITNP 191 (333)
Q Consensus 160 ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~ 191 (333)
..|+ .|+..=-+-|++||++++.++
T Consensus 160 ------~~~~-~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 160 ------NAEY-AFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp ------EHHH-HHHHHHHHTEEEEEEEEEEEE
T ss_pred ------chhh-hhHHHHHhhcccccceeEEec
Confidence 1222 266666688999999999985
No 175
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=49.82 E-value=15 Score=35.00 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=16.0
Q ss_pred EEEeecCCCCcccHHHHH
Q 040129 33 RLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 33 ~IaD~GCs~G~Ns~~~~~ 50 (333)
+|+|+||+||.-++.+..
T Consensus 113 ~ilDlGTGSG~iai~la~ 130 (280)
T COG2890 113 RILDLGTGSGAIAIALAK 130 (280)
T ss_pred cEEEecCChHHHHHHHHh
Confidence 999999999998887764
No 176
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=49.43 E-value=48 Score=33.22 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=16.8
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
.-+|+|+||++|..++.+.
T Consensus 293 ~~~vLDl~cG~G~~sl~la 311 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLA 311 (431)
T ss_pred CCEEEEcCCCcCHHHHHHH
Confidence 3589999999999998876
No 177
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=48.32 E-value=20 Score=35.43 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=28.2
Q ss_pred hhhhHHHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHHH
Q 040129 5 NVTKDHIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 5 ~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~ 50 (333)
+.+.-.|+||+...............-.+++|+|||.|.-|-.+++
T Consensus 186 SRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~ 231 (357)
T PRK11760 186 SRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVR 231 (357)
T ss_pred ChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHH
Confidence 4444567888775432110000023457999999999999966653
No 178
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=47.33 E-value=23 Score=31.47 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHHH
Q 040129 8 KDHIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 8 ~~~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~ 50 (333)
...+.+|+-..+... -..-+++|++|++|.-++.+++
T Consensus 33 ~~~vrea~f~~l~~~------~~g~~vLDLfaGsG~lglea~s 69 (189)
T TIGR00095 33 TRVVRELFFNILRPE------IQGAHLLDVFAGSGLLGEEALS 69 (189)
T ss_pred hHHHHHHHHHHHHHh------cCCCEEEEecCCCcHHHHHHHh
Confidence 445566665544321 1235799999999999988874
No 179
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=47.15 E-value=42 Score=32.50 Aligned_cols=59 Identities=25% Similarity=0.368 Sum_probs=41.1
Q ss_pred HHhhhhhhccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCccc--CCHHHHHHHHHh
Q 040129 173 LNNRAKEIVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYA--CPPGEFGAVVER 250 (333)
Q Consensus 173 L~~Ra~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~--ps~~E~~~~ie~ 250 (333)
|+-=+.-+.|||.||.+. .+- . +-.+.|..+|.... +| .||-+ +|..|..++++.
T Consensus 232 l~gl~~al~pgG~lIyTg--QPw--------H-PQle~IAr~LtsHr-~g-----------~~WvMRrRsq~EmD~Lv~~ 288 (311)
T PF12147_consen 232 LAGLARALEPGGYLIYTG--QPW--------H-PQLEMIARVLTSHR-DG-----------KAWVMRRRSQAEMDQLVEA 288 (311)
T ss_pred HHHHHHHhCCCcEEEEcC--CCC--------C-cchHHHHHHHhccc-CC-----------CceEEEecCHHHHHHHHHH
Confidence 455568899999998764 221 1 12467777777552 23 46665 689999999999
Q ss_pred CCcEE
Q 040129 251 NGNFR 255 (333)
Q Consensus 251 ~G~F~ 255 (333)
+| |+
T Consensus 289 aG-F~ 292 (311)
T PF12147_consen 289 AG-FE 292 (311)
T ss_pred cC-Cc
Confidence 99 65
No 180
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=45.87 E-value=23 Score=34.98 Aligned_cols=19 Identities=21% Similarity=0.287 Sum_probs=16.6
Q ss_pred EEEEeecCCCCcccHHHHH
Q 040129 32 IRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~~ 50 (333)
-+|+|+||++|..++.+.+
T Consensus 235 ~~vLDL~cG~G~~~l~la~ 253 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAG 253 (374)
T ss_pred CEEEEccCCccHHHHHHhh
Confidence 4899999999999988873
No 181
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=45.38 E-value=33 Score=28.14 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=14.3
Q ss_pred EEEeecCCCCcccHHHH
Q 040129 33 RLADCGCAVGPNTFNAM 49 (333)
Q Consensus 33 ~IaD~GCs~G~Ns~~~~ 49 (333)
+|.|+||..|.-|+.+.
T Consensus 1 ~vlDiGa~~G~~~~~~~ 17 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFA 17 (143)
T ss_pred CEEEccCCccHHHHHHH
Confidence 58999999998887665
No 182
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=41.84 E-value=17 Score=32.69 Aligned_cols=37 Identities=16% Similarity=0.292 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCH
Q 040129 205 GLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPP 241 (333)
Q Consensus 205 ~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~ 241 (333)
+.+|..+.++|..||++|++..+++..-|.=|-|||.
T Consensus 38 gIv~~tvKdvLQsLvDD~lV~~eKIgtSnyywsfps~ 74 (203)
T KOG3433|consen 38 GIVWQTVKDVLQSLVDDGLVIKEKIGTSNYYWSFPSE 74 (203)
T ss_pred ceehhHHHHHHHHHhccchHHHHHhcccccccccchH
Confidence 3467888999999999999999999999999999985
No 183
>PRK11524 putative methyltransferase; Provisional
Probab=41.67 E-value=38 Score=31.98 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=16.8
Q ss_pred HHHHHHhhhhhhccCceEEEEe
Q 040129 169 LERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 169 ~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
+..+|..=.+=|++||.|++..
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEEc
Confidence 4556666667889999999864
No 184
>PF14904 FAM86: Family of unknown function
Probab=41.59 E-value=23 Score=28.68 Aligned_cols=31 Identities=26% Similarity=0.405 Sum_probs=26.1
Q ss_pred HHHHHHHhhhhhhhh--cChHHHHHHHHHHHHH
Q 040129 278 IKHVRAATESMFNKH--FSYEVTEEMFRQLLER 308 (333)
Q Consensus 278 a~~iRa~~e~~l~~h--fgeei~delf~r~~~~ 308 (333)
..|.|+|...+|++| .+.|+.|+||+.|++.
T Consensus 67 ~kY~~~FLk~lI~k~Ea~~~EplDeLYealae~ 99 (100)
T PF14904_consen 67 VKYRRCFLKELIKKHEAVHCEPLDELYEALAEV 99 (100)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 457899999999965 4889999999999864
No 185
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=41.09 E-value=26 Score=33.59 Aligned_cols=43 Identities=12% Similarity=0.217 Sum_probs=25.3
Q ss_pred CcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCC
Q 040129 30 NTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSS 81 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~ 81 (333)
++++|-.-|||+|-=.-.+.=-+.+. ... ....++|+-.|+-.
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~----~~~-----~~~~~~I~atDIs~ 157 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADT----LGT-----APGRWKVFASDIDT 157 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHh----hcc-----cCCCcEEEEEECCH
Confidence 46999999999996543332111121 111 01257888888755
No 186
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=40.71 E-value=13 Score=34.82 Aligned_cols=65 Identities=23% Similarity=0.421 Sum_probs=42.0
Q ss_pred HhHHHHHHhhhhhhccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHH
Q 040129 167 KDLERFLNNRAKEIVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGA 246 (333)
Q Consensus 167 ~D~~~FL~~Ra~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~ 246 (333)
-++..++-.=+.-|+|||.|....=--++.. +. .+.- .--|..+..=+++
T Consensus 202 G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~-------~f---~l~p--------------------s~RyAH~~~YVr~ 251 (287)
T COG4976 202 GALEGLFAGAAGLLAPGGLFAFSVETLPDDG-------GF---VLGP--------------------SQRYAHSESYVRA 251 (287)
T ss_pred cchhhHHHHHHHhcCCCceEEEEecccCCCC-------Ce---ecch--------------------hhhhccchHHHHH
Confidence 3566667777899999999998863222211 00 0111 1126677888889
Q ss_pred HHHhCCcEEEeEEEEe
Q 040129 247 VVERNGNFRIEVMGLT 262 (333)
Q Consensus 247 ~ie~~G~F~I~~le~~ 262 (333)
.++..| |+|..++-.
T Consensus 252 ~l~~~G-l~~i~~~~t 266 (287)
T COG4976 252 LLAASG-LEVIAIEDT 266 (287)
T ss_pred HHHhcC-ceEEEeecc
Confidence 999999 888777743
No 187
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=40.42 E-value=27 Score=21.89 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=14.9
Q ss_pred HHHHHHHhccCCCHhhhh
Q 040129 213 TILYDMVKVGLLSEAQVD 230 (333)
Q Consensus 213 ~~l~~mv~eG~i~~~~~d 230 (333)
..|.+|.+.|.|+++++.
T Consensus 6 ~~L~~l~~~G~IseeEy~ 23 (31)
T PF09851_consen 6 EKLKELYDKGEISEEEYE 23 (31)
T ss_pred HHHHHHHHcCCCCHHHHH
Confidence 357788999999999875
No 188
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=40.32 E-value=39 Score=30.65 Aligned_cols=23 Identities=13% Similarity=0.060 Sum_probs=19.3
Q ss_pred cEEEEeecCCCCcccHHHHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQDLI 53 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~ii 53 (333)
+--.+++||++|--|-.+.+.+.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~ 66 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIG 66 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcC
Confidence 67789999999998888877665
No 189
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=39.14 E-value=15 Score=30.35 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=14.0
Q ss_pred CCcEEEEeecCCCCcccHH
Q 040129 29 SNTIRLADCGCAVGPNTFN 47 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~ 47 (333)
.+.....|+||+.|--.-.
T Consensus 57 ~~~~~FVDlGCGNGLLV~I 75 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYI 75 (112)
T ss_pred CCCCceEEccCCchHHHHH
Confidence 3467899999999854433
No 190
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=38.22 E-value=48 Score=31.29 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=30.6
Q ss_pred CCcEEEEeecCCCCcccHHHH--------------HHHHHHHHHHhhhcCCCCCCCcceEEecCCCCC
Q 040129 29 SNTIRLADCGCAVGPNTFNAM--------------QDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSN 82 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~--------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~N 82 (333)
+.+-+|.|+||+-=|-++..| +.+++.+..-.... .++..+-+.|+-++
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l-----~~~~~~~v~Dl~~~ 166 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL-----GVPHDARVRDLLSD 166 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT-----T-CEEEEEE-TTTS
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh-----CCCcceeEeeeecc
Confidence 457899999999888887666 66777777655443 25566667676554
No 191
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=38.13 E-value=13 Score=24.06 Aligned_cols=15 Identities=20% Similarity=0.425 Sum_probs=8.7
Q ss_pred CcccCCHHHHHHHHH
Q 040129 235 PIYACPPGEFGAVVE 249 (333)
Q Consensus 235 P~y~ps~~E~~~~ie 249 (333)
|.|.||.+|++..+.
T Consensus 1 Pvf~Pt~eEF~dp~~ 15 (34)
T PF02375_consen 1 PVFYPTMEEFKDPIK 15 (34)
T ss_dssp EEE---HHHHS-HHH
T ss_pred CcccCCHHHHhCHHH
Confidence 788999999887763
No 192
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=37.09 E-value=45 Score=23.45 Aligned_cols=22 Identities=9% Similarity=0.206 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhccCCCHhh
Q 040129 207 MYNCMGTILYDMVKVGLLSEAQ 228 (333)
Q Consensus 207 ~~~~l~~~l~~mv~eG~i~~~~ 228 (333)
+=..|.++|.+|+.+|.|+++-
T Consensus 11 lG~aL~dtLDeli~~~~I~p~L 32 (49)
T PF02268_consen 11 LGIALTDTLDELIQEGKITPQL 32 (49)
T ss_dssp HHHHHHHHHHHHHHTTSS-HHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHH
Confidence 4468999999999999998764
No 193
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=36.44 E-value=2.2e+02 Score=26.48 Aligned_cols=52 Identities=23% Similarity=0.289 Sum_probs=38.0
Q ss_pred CcEEEEeecCCCCcccHHHHH------------HHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAMQ------------DLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTL 87 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~------------~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~l 87 (333)
+.-.|.|+|.+.|.-|-.+.+ ..++.+++++. ..+.+++++.|--.=|....
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~------~~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA------SNPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT------TCSSEEEEES-TTTSCGGGH
T ss_pred CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh------hcccceeeecchhccccHHh
Confidence 458999999999999999873 45566666543 25679999999776666654
No 194
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=34.52 E-value=60 Score=28.77 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHh
Q 040129 207 MYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVER 250 (333)
Q Consensus 207 ~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~ 250 (333)
.|+-|.+-++.|+++|.++++..+ ......+++|+.+.|++
T Consensus 137 ~~~~l~~~l~~~~~~gfi~~~~~~---~~~~~d~~~e~~~~i~~ 177 (178)
T TIGR00730 137 HFDGLVEWLKYSIQEGFISESHLK---LIHVVSRPDELIEQVQN 177 (178)
T ss_pred hHHHHHHHHHHHHHCCCCCHHHcC---cEEEcCCHHHHHHHHHh
Confidence 689999999999999999987765 44567899999888764
No 195
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=33.75 E-value=2e+02 Score=29.59 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=17.0
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
.-+|.|++||.|.=|..+.+
T Consensus 114 g~~VLD~CAAPGgKTt~la~ 133 (470)
T PRK11933 114 PQRVLDMAAAPGSKTTQIAA 133 (470)
T ss_pred CCEEEEeCCCccHHHHHHHH
Confidence 46899999999999977654
No 196
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=33.41 E-value=41 Score=24.42 Aligned_cols=27 Identities=22% Similarity=0.461 Sum_probs=23.1
Q ss_pred HHHHHHHHHhHHHHHHhhhhhhccCce
Q 040129 159 KAYANQFAKDLERFLNNRAKEIVPGGM 185 (333)
Q Consensus 159 ~ay~~Q~~~D~~~FL~~Ra~EL~~GG~ 185 (333)
+.+++-|..||..++..++.+|+.-|.
T Consensus 13 ~~~~~kf~~~w~~lf~~~s~~LK~~GI 39 (57)
T PF09597_consen 13 EEHAEKFESDWEKLFTTSSKQLKELGI 39 (57)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHCCC
Confidence 567778888999999999999998664
No 197
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=32.90 E-value=42 Score=31.51 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHHH
Q 040129 10 HIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 10 ~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~ 50 (333)
-|++|+.+ ... +.+.-+++|+|.|+|.-|-.+++
T Consensus 66 KL~~ale~-F~l------~~k~kv~LDiGsSTGGFTd~lLq 99 (245)
T COG1189 66 KLEKALEE-FEL------DVKGKVVLDIGSSTGGFTDVLLQ 99 (245)
T ss_pred HHHHHHHh-cCc------CCCCCEEEEecCCCccHHHHHHH
Confidence 46666664 222 35668999999999999977764
No 198
>PHA00457 inhibitor of host bacterial RNA polymerase
Probab=32.32 E-value=43 Score=24.52 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=23.9
Q ss_pred hcCCcCcccCCHHHHHHHHH----hCCcEEEeEEE
Q 040129 230 DSFNLPIYACPPGEFGAVVE----RNGNFRIEVMG 260 (333)
Q Consensus 230 d~fn~P~y~ps~~E~~~~ie----~~G~F~I~~le 260 (333)
.+|-+|.|..|.+|-...-| ..| |.|.++.
T Consensus 25 ~sfEVPV~A~SLeeA~e~AE~~Y~~aG-f~VtRiR 58 (63)
T PHA00457 25 QSFEVPVYAKSLEEATELAEWQYVPAG-FVVTRIR 58 (63)
T ss_pred ceEEeeeecccHHHHHHHHHHhhhccC-cEEEEec
Confidence 46889999999999877766 457 9887764
No 199
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=31.69 E-value=39 Score=31.30 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=25.3
Q ss_pred ceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEec
Q 040129 147 RIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITNP 191 (333)
Q Consensus 147 ~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~ 191 (333)
.||+.-+.+++.++|.+| |++||+|++-..
T Consensus 165 aIhvGAaa~~~pq~l~dq---------------L~~gGrllip~~ 194 (237)
T KOG1661|consen 165 AIHVGAAASELPQELLDQ---------------LKPGGRLLIPVG 194 (237)
T ss_pred eEEEccCccccHHHHHHh---------------hccCCeEEEeec
Confidence 799987788999999955 899999998764
No 200
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=31.61 E-value=24 Score=32.61 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=14.7
Q ss_pred CcEEEEeecCCCCcccHHH
Q 040129 30 NTIRLADCGCAVGPNTFNA 48 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~ 48 (333)
+-..+||+||+=|.-.+.+
T Consensus 60 ~kvefaDIGCGyGGLlv~L 78 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKL 78 (249)
T ss_pred ccceEEeeccCccchhhhc
Confidence 3478999999999765543
No 201
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=28.00 E-value=33 Score=30.12 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=15.9
Q ss_pred EEEeecCCCCcccHHHHHH
Q 040129 33 RLADCGCAVGPNTFNAMQD 51 (333)
Q Consensus 33 ~IaD~GCs~G~Ns~~~~~~ 51 (333)
+|+|.-|+.|.||+.+...
T Consensus 2 ~vlD~fcG~GGNtIqFA~~ 20 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART 20 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT
T ss_pred EEEEeccCcCHHHHHHHHh
Confidence 6899999999999998853
No 202
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=27.96 E-value=1.7e+02 Score=28.75 Aligned_cols=43 Identities=9% Similarity=0.084 Sum_probs=27.4
Q ss_pred EEEeecCCCCcccHHHHH------------HHHHHHHHHhhhcCCCCCCCcceEEecCC
Q 040129 33 RLADCGCAVGPNTFNAMQ------------DLIEIVKHKYKSQCPNSQNPEFHVSFNDQ 79 (333)
Q Consensus 33 ~IaD~GCs~G~Ns~~~~~------------~ii~~i~~~~~~~~~~~~~~~~~v~~nDl 79 (333)
+++|+||++|.-|+.+.. ..++..++.....+ ...++++..|.
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~----~~~v~~~~~d~ 254 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANN----IDNVQIIRMSA 254 (353)
T ss_pred cEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEEcCH
Confidence 599999999999996553 34455555443322 12366666665
No 203
>smart00400 ZnF_CHCC zinc finger.
Probab=27.34 E-value=52 Score=23.06 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=16.2
Q ss_pred EEEeecCCCCcccHHHHHHH
Q 040129 33 RLADCGCAVGPNTFNAMQDL 52 (333)
Q Consensus 33 ~IaD~GCs~G~Ns~~~~~~i 52 (333)
..=++||+.|.+.+.++..+
T Consensus 23 ~~~Cf~cg~gGd~i~fv~~~ 42 (55)
T smart00400 23 FFHCFGCGAGGNVISFLMKY 42 (55)
T ss_pred EEEEeCCCCCCCHHHHHHHH
Confidence 35579999999999888754
No 204
>COG2821 MltA Membrane-bound lytic murein transglycosylase [Cell envelope biogenesis, outer membrane]
Probab=26.87 E-value=55 Score=32.62 Aligned_cols=63 Identities=13% Similarity=0.228 Sum_probs=42.2
Q ss_pred hccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhh-cCCcCcccCCHHHHHHHHHhCCcEE
Q 040129 180 IVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVD-SFNLPIYACPPGEFGAVVERNGNFR 255 (333)
Q Consensus 180 L~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d-~fn~P~y~ps~~E~~~~ie~~G~F~ 255 (333)
+-.|+++.+.+.|.++ ..|.-+.. -|+++|.|+.+++- .-..-|..-.++|+.++|+.|-||-
T Consensus 201 ~~dG~~~r~~YAgkng----------~py~sIGr---~Lid~Gei~~~~~SMq~Ir~W~~~np~rv~elL~~N~sfV 264 (373)
T COG2821 201 LGDGRLNRFGYAGKNG----------HPYTSIGR---LLIDRGEIPKEEMSMQAIRDWFEANPQRVDELLEQNPSFV 264 (373)
T ss_pred cCCCCEEEEEEcccCC----------CcchhHHH---HHHHcCCCCcccCCHHHHHHHHHHCHHHHHHHHhhCCceE
Confidence 4456666666666432 23555665 56688999877643 1123466678999999999999864
No 205
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=26.58 E-value=4.9e+02 Score=23.63 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=19.0
Q ss_pred CcccCCHHHHHHHHHhCCcEEEeEEEEeC
Q 040129 235 PIYACPPGEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 235 P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 263 (333)
|=|.-+.+||++++. .+ |+|+.++..+
T Consensus 166 PPf~v~~~ev~~l~~-~~-f~i~~l~~~~ 192 (218)
T PF05724_consen 166 PPFSVTEEEVRELFG-PG-FEIEELEEED 192 (218)
T ss_dssp SS----HHHHHHHHT-TT-EEEEEEEEEE
T ss_pred cCCCCCHHHHHHHhc-CC-cEEEEEeccc
Confidence 446668899999999 55 9999999764
No 206
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=26.52 E-value=1.4e+02 Score=28.39 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHH
Q 040129 9 DHIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 9 ~~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~ 49 (333)
+-|.+++.+.+.... ..++..+|+-=||+-|+-+..+.
T Consensus 38 ~~I~~~L~~~~p~~~---~~~~~~~VLVPGsGLGRLa~Eia 75 (270)
T PF07942_consen 38 SPILDELESLFPPAG---SDRSKIRVLVPGSGLGRLAWEIA 75 (270)
T ss_pred HHHHHHHHHhhcccc---cCCCccEEEEcCCCcchHHHHHh
Confidence 345556666554321 24678999999999999887765
No 207
>PHA02734 coat protein; Provisional
Probab=25.73 E-value=49 Score=27.85 Aligned_cols=41 Identities=22% Similarity=0.261 Sum_probs=29.9
Q ss_pred cccHHHHHHHHHHHHHHhhhcC-CCCCCCcceEEecCCCCCc
Q 040129 43 PNTFNAMQDLIEIVKHKYKSQC-PNSQNPEFHVSFNDQSSND 83 (333)
Q Consensus 43 ~Ns~~~~~~ii~~i~~~~~~~~-~~~~~~~~~v~~nDlP~ND 83 (333)
.|+-.++-.||++|++...... .+..-.|-+|||+..|.|-
T Consensus 49 e~~k~aIHeiIK~IreA~kp~rn~g~gfkeawvyfsqvpena 90 (149)
T PHA02734 49 ANAKAAIHAIIKMIKDAMKPLRNKGKGFKEAWVYFSQVPENA 90 (149)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCchhHHHHhhhcCcccC
Confidence 4678889999999998765532 1223457889999999884
No 208
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=25.61 E-value=94 Score=25.92 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHH
Q 040129 207 MYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVV 248 (333)
Q Consensus 207 ~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~i 248 (333)
.|+-+-+-++.|+++|.++++..+ ...+..+++|+-+.|
T Consensus 95 ~w~~l~~~l~~~~~~g~i~~~~~~---~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 95 FWDPLLEFLDRMIEEGFISPDDLD---LLHFVDDPEEALEYI 133 (133)
T ss_dssp CCHHHHHHHHHHHHTTSSSHHHHC---CEEEESSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCCHHHCC---eEEEeCCHHHHHhhC
Confidence 577777778899999999987765 666788888876643
No 209
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=25.59 E-value=45 Score=29.25 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=15.2
Q ss_pred CCcEEEEeecCCCCcccHH
Q 040129 29 SNTIRLADCGCAVGPNTFN 47 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~ 47 (333)
-+.-+++|+||+.|--++.
T Consensus 47 iEgkkl~DLgcgcGmLs~a 65 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIA 65 (185)
T ss_pred ccCcchhhhcCchhhhHHH
Confidence 3457899999999987744
No 210
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=25.52 E-value=1.1e+02 Score=30.14 Aligned_cols=44 Identities=9% Similarity=0.038 Sum_probs=29.0
Q ss_pred EEEEeecCCCCcccHHHH------------HHHHHHHHHHhhhcCCCCCCCcceEEecCC
Q 040129 32 IRLADCGCAVGPNTFNAM------------QDLIEIVKHKYKSQCPNSQNPEFHVSFNDQ 79 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDl 79 (333)
-+++|++|++|..|+.+. ...|+..++.....+ ...++++..|.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~----~~~v~~~~~d~ 263 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANG----IDNVQIIRMSA 263 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhC----CCcEEEEECCH
Confidence 359999999999999655 334555555443322 22467777776
No 211
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=25.43 E-value=94 Score=22.05 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=28.3
Q ss_pred CcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCch
Q 040129 42 GPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDF 84 (333)
Q Consensus 42 G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDF 84 (333)
|. |-.--+++++.|.+...+.. +.++..+.|+++|.|..+|
T Consensus 11 Gr-s~EqK~~L~~~it~a~~~~~-~~p~~~v~V~i~ev~~~~~ 51 (60)
T PRK02289 11 GR-SQEQKNALAREVTEVVSRIA-KAPKEAIHVFINDMPEGTY 51 (60)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHh-CcCcceEEEEEEEeChhhe
Confidence 55 66666777777766655432 2356679999999998765
No 212
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=24.91 E-value=96 Score=21.76 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhhccCc
Q 040129 157 VVKAYANQFAKDLERFLNNRAKEIVPGG 184 (333)
Q Consensus 157 v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG 184 (333)
-.|.|-+.|++|-...|.+|.+-++..|
T Consensus 21 hmkrycrafrqdrdallear~kl~~r~~ 48 (54)
T PF13260_consen 21 HMKRYCRAFRQDRDALLEARNKLFRRSG 48 (54)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 3578999999999999999999877644
No 213
>KOG4068 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.68 E-value=82 Score=27.73 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHH----HhCC
Q 040129 208 YNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVV----ERNG 252 (333)
Q Consensus 208 ~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~i----e~~G 252 (333)
-+.+..+|.+|.++|++..-+-..-.+-+|.++++|.-..| .+.|
T Consensus 68 ~~~i~~Il~~l~k~g~~e~~Dk~rt~f~I~Wrs~dewgnmIyqW~~dsg 116 (174)
T KOG4068|consen 68 QEFIDEILEELEKKGLAEPTDKRRTRFFIYWRSLDEWGNMIYQWVSDSG 116 (174)
T ss_pred HHHHHHHHHHHHHccCCcccccCceEEEEEEcCHHHHHHHHHHHHHHcC
Confidence 47888999999999998664444566778999999998876 4567
No 214
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=24.59 E-value=45 Score=22.59 Aligned_cols=16 Identities=19% Similarity=0.405 Sum_probs=13.7
Q ss_pred cCcccCCHHHHHHHHH
Q 040129 234 LPIYACPPGEFGAVVE 249 (333)
Q Consensus 234 ~P~y~ps~~E~~~~ie 249 (333)
+|.+.||.+|++..+.
T Consensus 2 iPvf~Pt~eEF~Dp~~ 17 (42)
T smart00545 2 IPVFYPTMEEFKDPLA 17 (42)
T ss_pred CCeEcCCHHHHHCHHH
Confidence 6899999999987764
No 215
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=24.21 E-value=94 Score=32.06 Aligned_cols=23 Identities=13% Similarity=0.197 Sum_probs=19.0
Q ss_pred CcEEEEeecCCCCcccHHHHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAMQDL 52 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~i 52 (333)
+..+|+|.||++|.-.+.++..+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~ 53 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKN 53 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHH
Confidence 56899999999999887776553
No 216
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=23.63 E-value=57 Score=29.83 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=17.5
Q ss_pred CCcEEEEeecCCCCcccHHHHH
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~ 50 (333)
+.--+|.|+|||.|.=|..+++
T Consensus 68 ~p~~~VlD~G~APGsWsQVavq 89 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQ 89 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHH
Confidence 3458999999999998866554
No 217
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=23.61 E-value=4.2e+02 Score=24.41 Aligned_cols=36 Identities=3% Similarity=-0.019 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHHH
Q 040129 7 TKDHIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 7 ~~~~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~ 50 (333)
..|.|.+-+.++. .+..-+|.+-||+.|.+..-+.+
T Consensus 28 pnp~L~~~~~~l~--------~~~~~rvLvPgCGkg~D~~~LA~ 63 (226)
T PRK13256 28 PNEFLVKHFSKLN--------INDSSVCLIPMCGCSIDMLFFLS 63 (226)
T ss_pred CCHHHHHHHHhcC--------CCCCCeEEEeCCCChHHHHHHHh
Confidence 4456655554421 12346999999999999988763
No 218
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=22.96 E-value=1.5e+02 Score=26.89 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHhCCcEEEeEEEEe
Q 040129 239 CPPGEFGAVVERNGNFRIEVMGLT 262 (333)
Q Consensus 239 ps~~E~~~~ie~~G~F~I~~le~~ 262 (333)
....++|..+.++| |.|..=+++
T Consensus 103 ~~~~~LR~~L~~~g-f~I~~E~lv 125 (205)
T PF04816_consen 103 THAYELRRWLYENG-FEIIDEDLV 125 (205)
T ss_dssp S-HHHHHHHHHHTT-EEEEEEEEE
T ss_pred CChHHHHHHHHHCC-CEEEEeEEE
Confidence 35789999999999 998776654
No 219
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=22.77 E-value=82 Score=28.36 Aligned_cols=45 Identities=20% Similarity=0.385 Sum_probs=23.5
Q ss_pred CCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCC
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSS 81 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~ 81 (333)
.++++|-..|||+|-=.-.+.=-+-+ .... ..+-.++|+-.|+-.
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e----~~~~----~~~~~~~I~atDi~~ 74 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLE----LLPG----ALGWDFRILATDISP 74 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHH----HH-S-----TT-SEEEEEEES-H
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHH----Hhcc----cCCCceEEEEEECCH
Confidence 47899999999999654433211112 1111 112368888888744
No 220
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=22.56 E-value=1.6e+02 Score=31.17 Aligned_cols=72 Identities=29% Similarity=0.320 Sum_probs=41.4
Q ss_pred ceeecCC-CHHHHHH------HHHHHHHhHHHHHHhhhhhhccCceEEEEecCCCCC-CCCccchhhHHHHHHH------
Q 040129 147 RIHYAFA-PEVVVKA------YANQFAKDLERFLNNRAKEIVPGGMIIITNPSIPDG-MPFSEIANGLMYNCMG------ 212 (333)
Q Consensus 147 ~i~~~~~-~~~v~~a------y~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~gr~~~-~~~~~~~~~~~~~~l~------ 212 (333)
-||+.+- |++|.+| |++||+||.-.=|.|=.+ .|.++- +|+.. ...||..++
T Consensus 389 viHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRr------------wgHnelddp~ft--spvmyk~v~aReSvP 454 (913)
T KOG0451|consen 389 VIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRR------------WGHNELDDPTFT--SPVMYKEVEARESVP 454 (913)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHH------------hccccccCcccc--ChhHHHHHHhhhccc
Confidence 3788877 7777764 899999986433333221 233221 22221 112333332
Q ss_pred -HHHHHHHhccCCCHhhhhcC
Q 040129 213 -TILYDMVKVGLLSEAQVDSF 232 (333)
Q Consensus 213 -~~l~~mv~eG~i~~~~~d~f 232 (333)
.-+..|+++|++++|++..+
T Consensus 455 dlya~~L~~eg~~tee~vkE~ 475 (913)
T KOG0451|consen 455 DLYAQQLAKEGVLTEEKVKEM 475 (913)
T ss_pred HHHHHHHHhcccccHHHHHHH
Confidence 23558899999999987643
No 221
>PF14044 NETI: NETI protein
Probab=21.95 E-value=64 Score=23.41 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhccCCCHhhhhcCCcCccc
Q 040129 209 NCMGTILYDMVKVGLLSEAQVDSFNLPIYA 238 (333)
Q Consensus 209 ~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ 238 (333)
+.|++||..|..+|+.+ +..+--|+|.
T Consensus 8 ETI~~CL~RM~~eGY~P---vrR~EkPiF~ 34 (57)
T PF14044_consen 8 ETISDCLARMKKEGYMP---VRRIEKPIFK 34 (57)
T ss_pred CcHHHHHHHHHHcCCCc---eeeccccceE
Confidence 46789999999999876 4556666654
No 222
>PLN02672 methionine S-methyltransferase
Probab=20.91 E-value=45 Score=37.83 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=19.1
Q ss_pred HHHHHhhhhhhccCceEEEEecCC
Q 040129 170 ERFLNNRAKEIVPGGMIIITNPSI 193 (333)
Q Consensus 170 ~~FL~~Ra~EL~~GG~mvl~~~gr 193 (333)
.+++..=.+-|+|||.|++.+.++
T Consensus 258 r~i~~~a~~~L~pgG~l~lEiG~~ 281 (1082)
T PLN02672 258 ARAVEEGISVIKPMGIMIFNMGGR 281 (1082)
T ss_pred HHHHHHHHHhccCCCEEEEEECcc
Confidence 455666678899999999999764
No 223
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=20.64 E-value=2.3e+02 Score=27.01 Aligned_cols=54 Identities=15% Similarity=0.273 Sum_probs=28.1
Q ss_pred hhhccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEE
Q 040129 178 KEIVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRI 256 (333)
Q Consensus 178 ~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I 256 (333)
..|.||..|+++-...+. .+ ...+.+. ++- ..-..|.+.||.+|+.+.++ | |++
T Consensus 178 d~lapGS~L~ish~t~d~-~p-------~~~~~~~----~~~----------~~~~~~~~~Rs~~ei~~~f~--g-~el 231 (267)
T PF04672_consen 178 DALAPGSYLAISHATDDG-AP-------ERAEALE----AVY----------AQAGSPGRPRSREEIAAFFD--G-LEL 231 (267)
T ss_dssp CCS-TT-EEEEEEEB-TT-SH-------HHHHHHH----HHH----------HHCCS----B-HHHHHHCCT--T-SEE
T ss_pred HhCCCCceEEEEecCCCC-CH-------HHHHHHH----HHH----------HcCCCCceecCHHHHHHHcC--C-Ccc
Confidence 889999999999876432 11 1112222 222 22368999999999999887 5 553
No 224
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=20.64 E-value=1.1e+02 Score=27.56 Aligned_cols=18 Identities=22% Similarity=0.610 Sum_probs=13.0
Q ss_pred HHhhhhhhccCceEEEEe
Q 040129 173 LNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 173 L~~Ra~EL~~GG~mvl~~ 190 (333)
|+.=++-|+|||.|++.-
T Consensus 158 l~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 158 LRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp HHHHGGGEEEEEEEEE-T
T ss_pred HHHHHHHcCCCCEEEEec
Confidence 444458999999998853
No 225
>PF10357 Kin17_mid: Domain of Kin17 curved DNA-binding protein; InterPro: IPR019447 This entry represents the conserved central 169 residue region of the Kin17 DNA/RNA-binding proteins. The N-terminal region of Kin17 contains a zinc-finger domain, while in the human and mouse proteins there is a RecA-like domain found in the C-terminal region. In humans, Kin17 protein forms intra-nuclear foci during cell proliferation and is re-distributed in the nucleoplasm during the cell cycle []. ; PDB: 2V1N_A.
Probab=20.57 E-value=76 Score=26.81 Aligned_cols=26 Identities=31% Similarity=0.621 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHhHHHHHHhhhhh
Q 040129 154 PEVVVKAYANQFAKDLERFLNNRAKE 179 (333)
Q Consensus 154 ~~~v~~ay~~Q~~~D~~~FL~~Ra~E 179 (333)
|..+...|++||++||-..|+.|..+
T Consensus 10 ~~k~i~~yS~eFe~~Fl~lLr~~hg~ 35 (127)
T PF10357_consen 10 PGKFIDEYSEEFEKDFLRLLRRRHGT 35 (127)
T ss_dssp GGG-HHHHHHHHHHHHHHHHHHHTSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45678999999999999999987644
No 226
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=20.15 E-value=2.1e+02 Score=27.05 Aligned_cols=47 Identities=15% Similarity=0.400 Sum_probs=32.0
Q ss_pred HHhhhhhhccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCc
Q 040129 173 LNNRAKEIVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNL 234 (333)
Q Consensus 173 L~~Ra~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~ 234 (333)
|..=++.|+|||.+++..+. .+.+...+..|.+.|.+..+.++...-
T Consensus 178 le~~~~~Lkpgg~~~~y~P~---------------veQv~kt~~~l~~~g~~~ie~~E~l~R 224 (256)
T COG2519 178 LEHVSDALKPGGVVVVYSPT---------------VEQVEKTVEALRERGFVDIEAVETLVR 224 (256)
T ss_pred HHHHHHHhCCCcEEEEEcCC---------------HHHHHHHHHHHHhcCccchhhheeeeh
Confidence 44445899999999888744 356666666776778776665554433
No 227
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=20.14 E-value=1.2e+02 Score=21.30 Aligned_cols=45 Identities=11% Similarity=0.158 Sum_probs=30.5
Q ss_pred CCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchH
Q 040129 39 CAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFN 85 (333)
Q Consensus 39 Cs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn 85 (333)
|..|. |-..-.++++.|.+...... +.++..+.|.+++.|..||.
T Consensus 8 ~~~gr-s~eqk~~l~~~it~~l~~~~-~~p~~~v~V~i~e~~~~~w~ 52 (62)
T PRK00745 8 LFEGR-TVEQKRKLVEEITRVTVETL-GCPPESVDIIITDVKRENWA 52 (62)
T ss_pred EcCCC-CHHHHHHHHHHHHHHHHHHc-CCChhHEEEEEEEcChHHee
Confidence 45565 67777777777776544422 23455789999999988775
Done!