Query 040129
Match_columns 333
No_of_seqs 136 out of 516
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 08:10:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040129.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040129hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2efj_A 3,7-dimethylxanthine me 100.0 3.5E-91 1.2E-95 683.3 28.1 321 1-333 25-378 (384)
2 1m6e_X S-adenosyl-L-methionnin 100.0 1E-91 3.5E-96 682.0 22.0 317 1-333 26-357 (359)
3 3b5i_A S-adenosyl-L-methionine 100.0 2.7E-89 9.1E-94 668.8 32.1 325 1-331 26-374 (374)
4 3ccf_A Cyclopropane-fatty-acyl 99.2 1.2E-09 4E-14 100.6 21.1 201 30-313 57-258 (279)
5 2p35_A Trans-aconitate 2-methy 99.1 1.5E-09 5E-14 98.0 16.2 204 30-314 33-238 (259)
6 2yqz_A Hypothetical protein TT 99.0 5E-09 1.7E-13 94.6 14.8 205 29-315 38-244 (263)
7 3bus_A REBM, methyltransferase 98.9 3.2E-07 1.1E-11 83.4 23.8 183 30-307 61-256 (273)
8 3dtn_A Putative methyltransfer 98.9 3.1E-08 1E-12 88.2 15.4 168 29-261 43-213 (234)
9 3f4k_A Putative methyltransfer 98.9 2.9E-07 9.9E-12 82.8 21.3 199 30-333 46-257 (257)
10 3hem_A Cyclopropane-fatty-acyl 98.8 2.2E-07 7.5E-12 86.3 19.4 203 30-315 72-290 (302)
11 3ujc_A Phosphoethanolamine N-m 98.8 2E-07 6.7E-12 84.0 17.6 194 29-310 54-249 (266)
12 3kkz_A Uncharacterized protein 98.8 5.8E-07 2E-11 81.8 20.9 177 29-306 45-234 (267)
13 1kpg_A CFA synthase;, cyclopro 98.8 1.7E-06 6E-11 79.3 23.3 153 29-263 63-229 (287)
14 4gek_A TRNA (CMO5U34)-methyltr 98.8 1.4E-07 4.7E-12 87.1 14.7 148 30-255 70-238 (261)
15 3h2b_A SAM-dependent methyltra 98.7 9.1E-08 3.1E-12 83.2 11.5 143 31-264 42-184 (203)
16 3hnr_A Probable methyltransfer 98.7 1.4E-07 4.8E-12 82.9 11.7 156 31-262 46-201 (220)
17 3sm3_A SAM-dependent methyltra 98.6 4.9E-07 1.7E-11 79.7 14.2 111 110-263 96-208 (235)
18 4htf_A S-adenosylmethionine-de 98.6 8.5E-07 2.9E-11 81.4 15.8 102 111-263 132-233 (285)
19 3dli_A Methyltransferase; PSI- 98.6 9.6E-07 3.3E-11 79.0 15.2 146 29-265 40-187 (240)
20 3lcc_A Putative methyl chlorid 98.6 6.4E-07 2.2E-11 79.8 13.7 140 32-263 68-208 (235)
21 2o57_A Putative sarcosine dime 98.6 1.4E-05 4.7E-10 73.6 22.1 153 29-262 81-234 (297)
22 2a14_A Indolethylamine N-methy 98.6 5.4E-07 1.8E-11 82.4 12.3 86 113-263 154-239 (263)
23 1pjz_A Thiopurine S-methyltran 98.5 1.3E-06 4.6E-11 76.8 14.2 150 7-263 7-177 (203)
24 2aot_A HMT, histamine N-methyl 98.5 1.5E-06 5.3E-11 80.4 14.0 89 111-260 131-219 (292)
25 1xtp_A LMAJ004091AAA; SGPP, st 98.5 1.8E-06 6.2E-11 77.3 14.0 148 29-263 92-239 (254)
26 1vl5_A Unknown conserved prote 98.5 2.6E-06 9E-11 77.0 14.7 94 110-263 98-191 (260)
27 2fk8_A Methoxy mycolic acid sy 98.5 1.3E-05 4.6E-10 74.6 19.3 100 114-262 154-254 (318)
28 3bkx_A SAM-dependent methyltra 98.4 6E-05 2.1E-09 68.3 22.9 166 30-263 43-220 (275)
29 3bgv_A MRNA CAP guanine-N7 met 98.4 1.5E-06 5E-11 81.2 12.2 160 30-263 34-233 (313)
30 3reo_A (ISO)eugenol O-methyltr 98.4 9.7E-06 3.3E-10 78.0 17.5 154 29-262 202-355 (368)
31 3ou2_A SAM-dependent methyltra 98.4 8.9E-07 3E-11 77.2 9.1 158 32-262 48-205 (218)
32 3dlc_A Putative S-adenosyl-L-m 98.4 3.2E-06 1.1E-10 73.4 12.2 96 111-261 107-202 (219)
33 3mgg_A Methyltransferase; NYSG 98.4 3.5E-06 1.2E-10 76.7 12.9 161 29-263 36-199 (276)
34 1nkv_A Hypothetical protein YJ 98.4 2.8E-06 9.5E-11 76.3 12.1 87 113-262 101-187 (256)
35 1ri5_A MRNA capping enzyme; me 98.4 1.8E-05 6.1E-10 72.3 17.7 102 112-263 130-251 (298)
36 2g72_A Phenylethanolamine N-me 98.4 1.8E-06 6.3E-11 79.5 11.1 88 111-263 170-257 (289)
37 2vdw_A Vaccinia virus capping 98.4 8.8E-06 3E-10 76.5 15.9 178 30-263 48-247 (302)
38 3p9c_A Caffeic acid O-methyltr 98.4 1.4E-05 4.8E-10 76.8 17.5 152 30-262 201-353 (364)
39 3lst_A CALO1 methyltransferase 98.4 4.3E-06 1.5E-10 79.5 13.5 151 29-261 183-335 (348)
40 1xxl_A YCGJ protein; structura 98.4 1.2E-05 4.1E-10 71.9 15.6 93 111-263 83-175 (239)
41 3ege_A Putative methyltransfer 98.3 6.3E-06 2.2E-10 74.9 13.6 192 30-311 34-232 (261)
42 3vc1_A Geranyl diphosphate 2-C 98.3 3.5E-05 1.2E-09 71.8 18.4 142 29-263 116-270 (312)
43 2p7i_A Hypothetical protein; p 98.3 3.5E-06 1.2E-10 74.6 10.7 151 32-262 44-199 (250)
44 2gb4_A Thiopurine S-methyltran 98.3 1.4E-05 4.6E-10 73.3 15.0 79 114-264 151-229 (252)
45 3dh0_A SAM dependent methyltra 98.3 4.4E-06 1.5E-10 73.2 11.2 144 30-263 37-182 (219)
46 3e23_A Uncharacterized protein 98.3 3E-06 1E-10 74.0 10.0 140 31-263 44-183 (211)
47 3l8d_A Methyltransferase; stru 98.3 1.1E-05 3.9E-10 71.5 13.9 147 31-262 54-200 (242)
48 3e8s_A Putative SAM dependent 98.3 2.8E-06 9.4E-11 74.3 9.3 98 111-262 112-209 (227)
49 3mcz_A O-methyltransferase; ad 98.3 6.1E-06 2.1E-10 78.2 12.3 153 31-258 180-335 (352)
50 2ex4_A Adrenal gland protein A 98.2 2.4E-06 8.1E-11 76.5 8.4 148 30-263 79-226 (241)
51 3gwz_A MMCR; methyltransferase 98.2 1.9E-05 6.6E-10 75.7 15.0 153 29-261 201-355 (369)
52 3jwh_A HEN1; methyltransferase 98.2 2.7E-05 9.2E-10 68.3 14.8 91 111-262 98-192 (217)
53 3cc8_A Putative methyltransfer 98.2 1.7E-05 5.7E-10 69.3 13.3 153 30-263 32-186 (230)
54 3cgg_A SAM-dependent methyltra 98.2 2.1E-05 7.2E-10 66.8 13.4 127 30-260 46-173 (195)
55 3ocj_A Putative exported prote 98.2 8.4E-06 2.9E-10 75.8 11.7 168 29-261 117-290 (305)
56 3dp7_A SAM-dependent methyltra 98.2 1.1E-05 3.7E-10 77.3 12.8 158 30-260 179-340 (363)
57 3g5l_A Putative S-adenosylmeth 98.2 4.2E-06 1.4E-10 75.2 9.3 171 30-264 44-218 (253)
58 2r3s_A Uncharacterized protein 98.2 1.9E-05 6.4E-10 74.0 13.9 158 29-262 164-323 (335)
59 4a6d_A Hydroxyindole O-methylt 98.2 1.5E-05 5.3E-10 76.2 13.4 151 32-260 181-332 (353)
60 3i53_A O-methyltransferase; CO 98.2 1.4E-05 4.7E-10 75.2 12.5 152 29-262 168-321 (332)
61 1vlm_A SAM-dependent methyltra 98.2 3.5E-05 1.2E-09 67.9 14.3 91 111-262 98-188 (219)
62 3g5t_A Trans-aconitate 3-methy 98.2 2.9E-05 9.8E-10 71.8 13.9 145 30-254 36-196 (299)
63 3g2m_A PCZA361.24; SAM-depende 98.2 2.4E-06 8E-11 79.2 6.5 162 33-263 85-275 (299)
64 2ip2_A Probable phenazine-spec 98.2 7.2E-05 2.5E-09 70.2 16.8 152 32-262 169-322 (334)
65 1y8c_A S-adenosylmethionine-de 98.1 4E-05 1.4E-09 67.7 13.9 46 111-192 98-144 (246)
66 2i62_A Nicotinamide N-methyltr 98.1 2.9E-05 9.9E-10 69.7 13.0 85 114-263 156-240 (265)
67 1qzz_A RDMB, aclacinomycin-10- 98.1 2.4E-05 8.3E-10 74.5 13.0 156 29-263 181-340 (374)
68 3i9f_A Putative type 11 methyl 98.1 7.8E-05 2.7E-09 62.5 14.2 133 29-263 16-149 (170)
69 3bkw_A MLL3908 protein, S-aden 98.1 2.1E-05 7.3E-10 69.6 11.1 168 30-263 43-215 (243)
70 3jwg_A HEN1, methyltransferase 98.1 0.00011 3.8E-09 64.3 15.5 93 110-263 97-193 (219)
71 3pfg_A N-methyltransferase; N, 98.1 1.8E-05 6E-10 71.6 10.5 106 29-194 49-155 (263)
72 1fp1_D Isoliquiritigenin 2'-O- 98.1 3.2E-05 1.1E-09 74.2 12.7 152 29-261 208-359 (372)
73 2kw5_A SLR1183 protein; struct 98.1 4.8E-05 1.6E-09 65.7 12.6 64 168-263 109-172 (202)
74 3ofk_A Nodulation protein S; N 98.1 3.7E-05 1.3E-09 67.2 11.9 95 29-192 50-156 (216)
75 2ld4_A Anamorsin; methyltransf 98.1 1E-05 3.5E-10 68.8 8.0 119 30-257 12-130 (176)
76 3ggd_A SAM-dependent methyltra 98.0 4E-05 1.4E-09 68.3 12.0 151 29-263 55-220 (245)
77 1x19_A CRTF-related protein; m 98.0 4.6E-05 1.6E-09 72.5 13.0 157 29-262 189-348 (359)
78 2xvm_A Tellurite resistance pr 98.0 3.1E-05 1.1E-09 66.3 10.4 127 31-260 33-171 (199)
79 1tw3_A COMT, carminomycin 4-O- 98.0 6.1E-05 2.1E-09 71.4 13.1 155 30-263 183-340 (360)
80 2zfu_A Nucleomethylin, cerebra 98.0 1.2E-05 4E-10 70.4 7.3 111 31-261 68-178 (215)
81 1zg3_A Isoflavanone 4'-O-methy 98.0 4.2E-05 1.4E-09 72.8 11.8 150 31-261 194-346 (358)
82 2qe6_A Uncharacterized protein 98.0 0.00024 8.3E-09 65.5 16.0 87 110-258 152-238 (274)
83 1fp2_A Isoflavone O-methyltran 97.9 9.7E-05 3.3E-09 70.1 12.9 150 30-261 188-340 (352)
84 4hg2_A Methyltransferase type 97.9 3.4E-05 1.1E-09 70.9 9.2 102 31-196 40-141 (257)
85 2p8j_A S-adenosylmethionine-de 97.9 8.3E-05 2.9E-09 64.3 11.3 49 111-195 85-133 (209)
86 4e2x_A TCAB9; kijanose, tetron 97.9 0.00017 5.7E-09 69.9 14.2 147 29-263 106-254 (416)
87 3giw_A Protein of unknown func 97.8 0.00023 8E-09 66.3 13.3 59 173-256 183-241 (277)
88 1yzh_A TRNA (guanine-N(7)-)-me 97.8 0.0002 6.7E-09 62.8 12.2 106 109-260 105-211 (214)
89 3g07_A 7SK snRNA methylphospha 97.8 0.0001 3.5E-09 68.3 10.6 48 111-190 173-220 (292)
90 3gu3_A Methyltransferase; alph 97.8 0.00075 2.6E-08 61.8 16.0 105 29-192 21-128 (284)
91 2gs9_A Hypothetical protein TT 97.8 0.00027 9.3E-09 61.3 12.0 81 111-252 91-171 (211)
92 3grz_A L11 mtase, ribosomal pr 97.8 0.00022 7.5E-09 61.8 11.3 19 31-49 61-79 (205)
93 3thr_A Glycine N-methyltransfe 97.7 7.1E-05 2.4E-09 68.5 8.5 51 110-191 125-176 (293)
94 4fsd_A Arsenic methyltransfera 97.7 0.00027 9.1E-09 68.1 12.4 47 110-194 161-207 (383)
95 3m70_A Tellurite resistance pr 97.7 0.00011 3.6E-09 67.3 8.5 44 113-192 182-225 (286)
96 3opn_A Putative hemolysin; str 97.6 0.00019 6.4E-09 64.8 8.6 66 173-263 120-185 (232)
97 3lbf_A Protein-L-isoaspartate 97.5 0.00042 1.4E-08 60.1 9.7 20 30-49 77-96 (210)
98 1ve3_A Hypothetical protein PH 97.5 0.0011 3.9E-08 57.7 12.2 46 111-192 99-144 (227)
99 3evz_A Methyltransferase; NYSG 97.5 0.00097 3.3E-08 58.6 11.8 114 29-192 54-181 (230)
100 2pxx_A Uncharacterized protein 97.5 0.0012 4.1E-08 56.8 12.2 60 111-193 103-162 (215)
101 3dmg_A Probable ribosomal RNA 97.5 0.0011 3.9E-08 64.1 13.2 96 30-190 233-340 (381)
102 3mq2_A 16S rRNA methyltransfer 97.5 0.00014 4.8E-09 63.7 5.9 22 241-263 164-185 (218)
103 2avn_A Ubiquinone/menaquinone 97.4 0.00029 9.8E-09 63.7 7.9 156 30-263 54-214 (260)
104 3q87_B N6 adenine specific DNA 97.4 0.00035 1.2E-08 59.3 7.7 71 32-132 25-95 (170)
105 1dus_A MJ0882; hypothetical pr 97.4 0.0013 4.6E-08 55.3 11.2 95 30-193 52-160 (194)
106 3hm2_A Precorrin-6Y C5,15-meth 97.4 0.0021 7.1E-08 53.8 12.0 21 29-49 24-44 (178)
107 2plw_A Ribosomal RNA methyltra 97.4 0.00073 2.5E-08 58.1 9.2 55 111-192 102-156 (201)
108 3bxo_A N,N-dimethyltransferase 97.4 0.00095 3.3E-08 58.6 10.1 47 113-194 98-145 (239)
109 3p9n_A Possible methyltransfer 97.3 0.0014 4.7E-08 56.1 10.7 98 31-194 45-157 (189)
110 3iv6_A Putative Zn-dependent a 97.3 0.00054 1.8E-08 63.2 8.5 21 29-49 44-64 (261)
111 3mti_A RRNA methylase; SAM-dep 97.3 0.0018 6.3E-08 54.8 11.3 19 31-49 23-41 (185)
112 4df3_A Fibrillarin-like rRNA/T 97.3 0.00048 1.6E-08 62.6 7.9 124 10-193 61-185 (233)
113 3e05_A Precorrin-6Y C5,15-meth 97.3 0.0045 1.5E-07 53.4 13.9 21 30-50 40-60 (204)
114 3m33_A Uncharacterized protein 97.3 0.0018 6.2E-08 57.1 11.2 19 31-49 49-67 (226)
115 3d2l_A SAM-dependent methyltra 97.3 0.00067 2.3E-08 59.8 7.8 93 32-192 35-139 (243)
116 1wzn_A SAM-dependent methyltra 97.2 0.0012 4.1E-08 58.8 9.5 25 168-192 123-147 (252)
117 3uwp_A Histone-lysine N-methyl 97.2 0.0014 4.9E-08 64.4 10.3 20 30-49 173-192 (438)
118 2fca_A TRNA (guanine-N(7)-)-me 97.2 0.0015 5E-08 57.6 9.4 101 31-190 39-153 (213)
119 3fzg_A 16S rRNA methylase; met 97.2 0.00029 1E-08 62.5 4.7 72 29-133 48-133 (200)
120 3dxy_A TRNA (guanine-N(7)-)-me 97.1 0.00056 1.9E-08 60.9 6.2 52 109-190 99-150 (218)
121 1zx0_A Guanidinoacetate N-meth 97.1 0.003 1E-07 56.0 10.7 19 31-49 61-79 (236)
122 3q7e_A Protein arginine N-meth 97.1 0.00066 2.2E-08 64.7 6.6 102 31-187 67-170 (349)
123 3ckk_A TRNA (guanine-N(7)-)-me 97.1 0.008 2.7E-07 53.9 13.4 107 29-190 45-168 (235)
124 3hp7_A Hemolysin, putative; st 97.1 0.00084 2.9E-08 63.0 6.7 160 10-263 72-233 (291)
125 3r0q_C Probable protein argini 97.0 0.0012 4.1E-08 63.6 7.6 105 29-189 62-168 (376)
126 1ej0_A FTSJ; methyltransferase 97.0 0.0014 4.7E-08 54.1 6.5 109 31-193 23-139 (180)
127 2fyt_A Protein arginine N-meth 96.9 0.004 1.4E-07 59.1 10.4 100 31-187 65-168 (340)
128 1g6q_1 HnRNP arginine N-methyl 96.9 0.0046 1.6E-07 58.3 10.7 100 31-187 39-142 (328)
129 2yxe_A Protein-L-isoaspartate 96.8 0.0043 1.5E-07 53.8 9.1 20 31-50 78-97 (215)
130 1vbf_A 231AA long hypothetical 96.8 0.0023 7.8E-08 56.2 6.9 20 31-50 71-90 (231)
131 1jg1_A PIMT;, protein-L-isoasp 96.8 0.0048 1.7E-07 54.7 8.9 20 31-50 92-111 (235)
132 4dzr_A Protein-(glutamine-N5) 96.7 0.0016 5.4E-08 55.9 5.5 127 29-190 29-165 (215)
133 1af7_A Chemotaxis receptor met 96.7 0.0019 6.4E-08 59.9 6.2 41 113-189 211-251 (274)
134 2pjd_A Ribosomal RNA small sub 96.7 0.002 6.8E-08 61.0 6.5 107 32-191 198-304 (343)
135 4dcm_A Ribosomal RNA large sub 96.7 0.0014 4.7E-08 63.3 5.4 108 32-190 224-334 (375)
136 2b3t_A Protein methyltransfera 96.7 0.013 4.5E-07 53.2 11.5 124 31-190 110-238 (276)
137 2nxc_A L11 mtase, ribosomal pr 96.7 0.0012 4E-08 59.9 4.4 19 31-49 121-139 (254)
138 2yxd_A Probable cobalt-precorr 96.7 0.017 5.9E-07 47.9 11.3 19 31-49 36-54 (183)
139 3eey_A Putative rRNA methylase 96.7 0.011 3.7E-07 50.5 10.1 24 168-191 117-140 (197)
140 1u2z_A Histone-lysine N-methyl 96.6 0.016 5.4E-07 57.2 12.4 21 30-50 242-262 (433)
141 1l3i_A Precorrin-6Y methyltran 96.6 0.011 3.9E-07 49.3 9.8 36 7-49 17-52 (192)
142 3lpm_A Putative methyltransfer 96.6 0.0082 2.8E-07 54.1 9.4 24 167-190 153-176 (259)
143 2nyu_A Putative ribosomal RNA 96.6 0.0011 3.6E-08 56.7 3.0 116 31-192 23-147 (196)
144 3p2e_A 16S rRNA methylase; met 96.5 0.011 3.8E-07 52.6 9.7 21 242-263 166-186 (225)
145 2ozv_A Hypothetical protein AT 96.5 0.011 3.8E-07 53.6 9.5 61 110-191 110-171 (260)
146 2fhp_A Methylase, putative; al 96.5 0.0063 2.2E-07 51.2 7.4 19 31-49 45-63 (187)
147 2ift_A Putative methylase HI07 96.5 0.01 3.4E-07 51.5 8.7 18 32-49 55-72 (201)
148 1dl5_A Protein-L-isoaspartate 96.4 0.011 3.9E-07 55.0 9.5 20 31-50 76-95 (317)
149 1ws6_A Methyltransferase; stru 96.4 0.0074 2.5E-07 49.8 7.2 19 31-49 42-60 (171)
150 2fpo_A Methylase YHHF; structu 96.4 0.017 5.8E-07 50.1 9.8 19 31-49 55-73 (202)
151 2esr_A Methyltransferase; stru 96.4 0.013 4.3E-07 49.1 8.6 19 31-49 32-50 (177)
152 3njr_A Precorrin-6Y methylase; 96.4 0.04 1.4E-06 47.9 12.1 46 31-80 56-114 (204)
153 3gdh_A Trimethylguanosine synt 96.4 0.0011 3.7E-08 58.8 2.0 72 31-133 79-162 (241)
154 1fbn_A MJ fibrillarin homologu 96.4 0.033 1.1E-06 49.0 11.7 22 30-51 74-95 (230)
155 1jsx_A Glucose-inhibited divis 96.3 0.024 8.1E-07 48.6 10.2 20 31-50 66-85 (207)
156 2pbf_A Protein-L-isoaspartate 96.3 0.0029 9.8E-08 55.5 4.3 20 31-50 81-100 (227)
157 3bwc_A Spermidine synthase; SA 96.3 0.023 7.8E-07 52.9 10.5 21 29-49 94-114 (304)
158 4hc4_A Protein arginine N-meth 96.3 0.006 2E-07 59.1 6.5 20 168-187 167-186 (376)
159 3orh_A Guanidinoacetate N-meth 96.2 0.039 1.3E-06 49.1 11.5 23 167-189 147-169 (236)
160 1r18_A Protein-L-isoaspartate( 96.2 0.011 3.7E-07 52.0 7.5 20 31-50 85-104 (227)
161 2h00_A Methyltransferase 10 do 96.2 0.017 5.8E-07 51.5 8.9 21 30-50 65-85 (254)
162 1nt2_A Fibrillarin-like PRE-rR 96.1 0.016 5.5E-07 50.9 8.2 20 30-49 57-76 (210)
163 1xdz_A Methyltransferase GIDB; 96.1 0.029 1E-06 49.7 10.0 20 30-49 70-89 (240)
164 1o9g_A RRNA methyltransferase; 96.0 0.015 5.3E-07 51.8 7.4 21 30-50 51-71 (250)
165 2b25_A Hypothetical protein; s 95.9 0.094 3.2E-06 48.9 13.1 20 31-50 106-125 (336)
166 1i1n_A Protein-L-isoaspartate 95.9 0.03 1E-06 48.8 8.8 21 30-50 77-97 (226)
167 3u81_A Catechol O-methyltransf 95.9 0.051 1.8E-06 47.4 10.3 19 31-49 59-77 (221)
168 1p91_A Ribosomal RNA large sub 95.9 0.031 1E-06 50.1 9.1 21 30-50 85-105 (269)
169 3gjy_A Spermidine synthase; AP 95.9 0.031 1.1E-06 52.9 9.3 101 29-192 88-202 (317)
170 1uir_A Polyamine aminopropyltr 95.8 0.023 7.8E-07 53.2 8.0 21 29-49 76-96 (314)
171 3mb5_A SAM-dependent methyltra 95.7 0.17 5.8E-06 44.7 13.3 21 30-50 93-113 (255)
172 2y1w_A Histone-arginine methyl 95.7 0.03 1E-06 53.0 8.6 19 31-49 51-69 (348)
173 3lcv_B Sisomicin-gentamicin re 95.7 0.007 2.4E-07 56.1 4.0 108 29-169 131-259 (281)
174 2gpy_A O-methyltransferase; st 95.6 0.083 2.8E-06 46.3 10.6 20 31-50 55-74 (233)
175 3fpf_A Mtnas, putative unchara 95.4 0.052 1.8E-06 50.9 9.0 21 29-49 121-141 (298)
176 3sso_A Methyltransferase; macr 95.4 0.064 2.2E-06 52.5 9.9 127 29-220 215-359 (419)
177 2vdv_E TRNA (guanine-N(7)-)-me 95.4 0.11 3.8E-06 46.2 10.9 21 30-50 49-69 (246)
178 3id6_C Fibrillarin-like rRNA/T 95.4 0.051 1.7E-06 49.0 8.6 37 10-50 60-96 (232)
179 3htx_A HEN1; HEN1, small RNA m 95.4 0.066 2.3E-06 57.0 10.5 98 31-192 722-836 (950)
180 3g89_A Ribosomal RNA small sub 95.3 0.027 9.2E-07 50.9 6.6 21 29-49 79-99 (249)
181 2ipx_A RRNA 2'-O-methyltransfe 95.3 0.076 2.6E-06 46.6 9.1 20 31-50 78-97 (233)
182 3ntv_A MW1564 protein; rossman 95.3 0.069 2.4E-06 47.1 8.9 19 31-49 72-90 (232)
183 1iy9_A Spermidine synthase; ro 95.1 0.073 2.5E-06 48.8 8.9 73 29-127 74-160 (275)
184 3b3j_A Histone-arginine methyl 95.1 0.064 2.2E-06 53.4 9.1 19 31-49 159-177 (480)
185 3bzb_A Uncharacterized protein 95.1 0.056 1.9E-06 49.4 8.0 19 31-49 80-98 (281)
186 3frh_A 16S rRNA methylase; met 95.1 0.011 3.7E-07 54.2 3.0 106 29-167 104-227 (253)
187 1inl_A Spermidine synthase; be 94.9 0.05 1.7E-06 50.4 7.2 20 30-49 90-109 (296)
188 2hnk_A SAM-dependent O-methylt 94.9 0.2 6.7E-06 44.2 10.7 20 31-50 61-80 (239)
189 1i9g_A Hypothetical protein RV 94.8 0.14 4.6E-06 46.1 9.7 20 31-50 100-119 (280)
190 3tma_A Methyltransferase; thum 94.8 0.18 6.2E-06 47.5 10.8 37 7-50 187-223 (354)
191 3adn_A Spermidine synthase; am 94.7 0.15 5.2E-06 47.3 10.0 21 29-49 82-102 (294)
192 2oxt_A Nucleoside-2'-O-methylt 94.7 0.035 1.2E-06 50.9 5.5 21 30-50 74-94 (265)
193 1xj5_A Spermidine synthase 1; 94.7 0.079 2.7E-06 50.2 8.1 21 29-49 119-139 (334)
194 3dou_A Ribosomal RNA large sub 94.6 0.034 1.2E-06 48.1 4.8 21 30-50 25-45 (191)
195 1g8a_A Fibrillarin-like PRE-rR 94.6 0.15 5.1E-06 44.4 9.0 21 31-51 74-94 (227)
196 3ajd_A Putative methyltransfer 94.6 0.058 2E-06 49.1 6.6 27 167-193 188-214 (274)
197 1yb2_A Hypothetical protein TA 94.5 0.074 2.5E-06 48.2 7.2 21 30-50 110-130 (275)
198 2p41_A Type II methyltransfera 94.5 0.087 3E-06 49.2 7.7 20 31-50 83-102 (305)
199 1ixk_A Methyltransferase; open 94.5 0.16 5.5E-06 47.3 9.6 26 167-192 223-248 (315)
200 1mjf_A Spermidine synthase; sp 94.4 0.15 5E-06 46.8 8.9 21 29-49 74-94 (281)
201 2i7c_A Spermidine synthase; tr 94.4 0.1 3.5E-06 47.9 7.8 21 29-49 77-97 (283)
202 2frx_A Hypothetical protein YE 94.3 0.48 1.6E-05 47.0 13.1 21 30-50 117-137 (479)
203 2pt6_A Spermidine synthase; tr 94.2 0.13 4.5E-06 48.2 8.4 20 30-49 116-135 (321)
204 1o54_A SAM-dependent O-methylt 94.2 0.13 4.5E-06 46.5 8.0 74 31-121 113-187 (277)
205 2yvl_A TRMI protein, hypotheti 94.1 0.31 1.1E-05 42.6 10.2 20 31-50 92-111 (248)
206 2xyq_A Putative 2'-O-methyl tr 94.1 0.36 1.2E-05 44.9 11.0 23 170-192 151-173 (290)
207 2wa2_A Non-structural protein 94.0 0.041 1.4E-06 50.7 4.3 21 30-50 82-102 (276)
208 1sqg_A SUN protein, FMU protei 93.9 0.2 6.9E-06 48.7 9.2 125 31-193 247-377 (429)
209 2pwy_A TRNA (adenine-N(1)-)-me 93.8 0.15 5.2E-06 44.9 7.6 20 31-50 97-116 (258)
210 3tr6_A O-methyltransferase; ce 93.8 0.22 7.6E-06 43.0 8.4 19 31-49 65-83 (225)
211 1nv8_A HEMK protein; class I a 93.6 0.31 1.1E-05 44.7 9.6 19 32-50 125-143 (284)
212 2b2c_A Spermidine synthase; be 93.6 0.15 5.1E-06 47.8 7.4 20 30-49 108-127 (314)
213 3duw_A OMT, O-methyltransferas 93.4 0.49 1.7E-05 40.8 10.1 19 31-49 59-77 (223)
214 3tfw_A Putative O-methyltransf 93.4 0.52 1.8E-05 41.9 10.4 19 31-49 64-82 (248)
215 2yxl_A PH0851 protein, 450AA l 93.3 0.6 2.1E-05 45.7 11.6 20 31-50 260-279 (450)
216 2o07_A Spermidine synthase; st 93.3 0.15 5.1E-06 47.5 6.8 21 29-49 94-114 (304)
217 2frn_A Hypothetical protein PH 93.2 0.27 9.3E-06 44.7 8.4 20 31-50 126-145 (278)
218 3dr5_A Putative O-methyltransf 92.8 0.54 1.9E-05 41.3 9.5 20 31-50 57-76 (221)
219 2igt_A SAM dependent methyltra 92.5 0.58 2E-05 44.0 9.8 28 166-193 248-275 (332)
220 1wxx_A TT1595, hypothetical pr 92.3 0.63 2.2E-05 44.4 9.9 29 164-192 299-327 (382)
221 2f8l_A Hypothetical protein LM 92.1 0.62 2.1E-05 43.6 9.5 128 30-192 130-258 (344)
222 4dmg_A Putative uncharacterize 91.6 1.9 6.6E-05 41.5 12.5 28 164-191 300-327 (393)
223 3tqs_A Ribosomal RNA small sub 91.4 0.46 1.6E-05 43.1 7.4 51 31-87 30-92 (255)
224 2ih2_A Modification methylase 90.6 1.3 4.5E-05 42.1 10.2 24 169-192 143-166 (421)
225 3m6w_A RRNA methylase; rRNA me 90.5 0.48 1.6E-05 47.0 7.2 20 31-50 102-121 (464)
226 3gru_A Dimethyladenosine trans 90.4 0.64 2.2E-05 43.2 7.5 66 31-129 51-128 (295)
227 1zq9_A Probable dimethyladenos 90.3 0.73 2.5E-05 42.1 7.8 68 31-130 29-108 (285)
228 1ne2_A Hypothetical protein TA 90.2 0.5 1.7E-05 40.1 6.2 20 30-49 51-70 (200)
229 4azs_A Methyltransferase WBDD; 89.2 0.54 1.8E-05 47.4 6.4 34 29-62 65-110 (569)
230 2as0_A Hypothetical protein PH 89.0 1.9 6.4E-05 41.1 9.9 29 164-192 309-337 (396)
231 3kr9_A SAM-dependent methyltra 89.0 0.91 3.1E-05 40.5 7.1 47 30-79 15-75 (225)
232 3v97_A Ribosomal RNA large sub 88.9 1.5 5.2E-05 45.5 9.8 28 166-193 633-660 (703)
233 3m4x_A NOL1/NOP2/SUN family pr 88.5 0.76 2.6E-05 45.4 6.8 20 31-50 106-125 (456)
234 1wy7_A Hypothetical protein PH 87.7 2.4 8.1E-05 35.8 8.8 20 30-49 49-68 (207)
235 2h1r_A Dimethyladenosine trans 86.8 1.2 4.2E-05 40.9 6.9 67 31-130 43-121 (299)
236 3c0k_A UPF0064 protein YCCW; P 86.4 7.8 0.00027 36.8 12.5 26 167-192 316-341 (396)
237 3lec_A NADB-rossmann superfami 86.4 1.6 5.4E-05 39.1 7.1 20 30-49 21-40 (230)
238 3fut_A Dimethyladenosine trans 83.8 0.97 3.3E-05 41.4 4.5 48 33-87 49-108 (271)
239 3khk_A Type I restriction-modi 83.8 5.9 0.0002 39.8 10.7 144 31-191 245-396 (544)
240 2okc_A Type I restriction enzy 83.0 6.8 0.00023 37.9 10.5 22 31-52 172-193 (445)
241 1qam_A ERMC' methyltransferase 81.4 2.5 8.7E-05 37.5 6.2 21 30-50 30-50 (244)
242 3gnl_A Uncharacterized protein 80.9 2.2 7.7E-05 38.5 5.7 20 30-49 21-40 (244)
243 3tm4_A TRNA (guanine N2-)-meth 80.8 7.3 0.00025 36.8 9.6 34 8-49 203-236 (373)
244 2qm3_A Predicted methyltransfe 80.5 10 0.00034 35.7 10.4 18 31-49 173-190 (373)
245 3lkd_A Type I restriction-modi 80.1 17 0.00059 36.4 12.5 22 30-51 221-242 (542)
246 3uzu_A Ribosomal RNA small sub 79.5 4.3 0.00015 37.1 7.2 50 31-88 43-108 (279)
247 1qyr_A KSGA, high level kasuga 79.4 2.6 8.8E-05 38.0 5.6 50 31-88 22-85 (252)
248 2bm8_A Cephalosporin hydroxyla 78.2 1.7 5.9E-05 38.3 4.0 35 9-50 67-101 (236)
249 3ftd_A Dimethyladenosine trans 74.4 2.2 7.4E-05 38.3 3.6 49 31-87 32-93 (249)
250 3s1s_A Restriction endonucleas 70.7 35 0.0012 36.3 12.0 24 169-192 444-467 (878)
251 1uwv_A 23S rRNA (uracil-5-)-me 67.1 17 0.00059 35.0 8.4 46 31-80 287-344 (433)
252 1yub_A Ermam, rRNA methyltrans 66.0 3.7 0.00013 36.2 3.2 22 30-51 29-50 (245)
253 3k6r_A Putative transferase PH 61.2 11 0.00039 34.4 5.6 19 31-49 126-144 (278)
254 3r3h_A O-methyltransferase, SA 58.7 3.8 0.00013 36.2 1.9 20 31-50 61-80 (242)
255 2qy6_A UPF0209 protein YFCK; s 58.6 5.1 0.00017 36.2 2.7 24 29-52 59-82 (257)
256 2k4m_A TR8_protein, UPF0146 pr 58.5 8.3 0.00028 32.4 3.7 33 12-49 22-55 (153)
257 3a27_A TYW2, uncharacterized p 58.3 4.6 0.00016 36.3 2.4 20 31-50 120-139 (272)
258 4gqb_A Protein arginine N-meth 57.7 9.5 0.00033 39.2 4.8 25 28-52 355-379 (637)
259 3ll7_A Putative methyltransfer 55.4 10 0.00034 36.8 4.3 46 31-80 94-153 (410)
260 3ua3_A Protein arginine N-meth 54.7 11 0.00037 39.4 4.6 23 29-51 408-430 (745)
261 3c3p_A Methyltransferase; NP_9 53.5 3.7 0.00013 34.8 0.8 19 31-49 57-75 (210)
262 2avd_A Catechol-O-methyltransf 52.7 5.7 0.0002 33.9 1.9 19 31-49 70-88 (229)
263 3cbg_A O-methyltransferase; cy 50.4 13 0.00044 32.2 3.9 19 31-49 73-91 (232)
264 1m6y_A S-adenosyl-methyltransf 48.6 7.1 0.00024 36.1 2.0 21 31-51 27-47 (301)
265 3c3y_A Pfomt, O-methyltransfer 48.1 8.3 0.00028 33.7 2.3 20 31-50 71-90 (237)
266 2jjq_A Uncharacterized RNA met 47.8 19 0.00066 34.7 5.0 18 32-49 292-309 (425)
267 3evf_A RNA-directed RNA polyme 47.3 14 0.00048 34.0 3.7 19 31-49 75-93 (277)
268 1sui_A Caffeoyl-COA O-methyltr 46.8 6.2 0.00021 34.9 1.2 20 31-50 80-99 (247)
269 2zig_A TTHA0409, putative modi 46.4 14 0.00049 33.5 3.7 26 166-191 73-98 (297)
270 2zig_A TTHA0409, putative modi 45.8 30 0.001 31.3 5.8 31 32-62 237-279 (297)
271 4auk_A Ribosomal RNA large sub 45.1 11 0.00036 36.3 2.6 98 4-127 185-282 (375)
272 2r6z_A UPF0341 protein in RSP 44.9 6.5 0.00022 35.3 1.0 18 32-49 85-102 (258)
273 2yx1_A Hypothetical protein MJ 44.8 19 0.00065 33.3 4.3 18 31-49 196-213 (336)
274 3bt7_A TRNA (uracil-5-)-methyl 44.6 43 0.0015 31.2 6.8 44 32-79 215-270 (369)
275 3gcz_A Polyprotein; flavivirus 44.3 8.7 0.0003 35.5 1.8 19 31-49 91-109 (282)
276 3lkz_A Non-structural protein 42.7 15 0.0005 34.4 3.1 31 9-47 81-111 (321)
277 3p8z_A Mtase, non-structural p 42.7 19 0.00064 32.8 3.7 18 31-48 79-96 (267)
278 2b9e_A NOL1/NOP2/SUN domain fa 39.3 34 0.0012 31.4 5.1 20 31-50 103-122 (309)
279 2b78_A Hypothetical protein SM 37.4 13 0.00045 35.2 1.9 27 166-192 307-333 (385)
280 3eld_A Methyltransferase; flav 36.2 27 0.00093 32.4 3.8 22 29-50 80-101 (300)
281 2dul_A N(2),N(2)-dimethylguano 35.8 34 0.0012 32.4 4.6 20 31-50 48-67 (378)
282 2cmg_A Spermidine synthase; tr 35.1 17 0.0006 32.5 2.3 21 29-49 71-91 (262)
283 4hhu_A OR280; engineered prote 28.6 1E+02 0.0036 24.7 5.5 62 147-221 44-107 (170)
284 3vyw_A MNMC2; tRNA wobble urid 28.3 36 0.0012 31.6 3.2 24 29-52 95-118 (308)
285 2lmc_A Bacterial RNA polymeras 28.2 36 0.0012 25.2 2.5 30 230-260 45-78 (84)
286 2px2_A Genome polyprotein [con 28.2 20 0.0007 32.7 1.4 21 29-49 72-92 (269)
287 3ldu_A Putative methylase; str 24.7 33 0.0011 32.5 2.3 20 31-50 196-215 (385)
288 1wek_A Hypothetical protein TT 24.7 90 0.0031 27.3 5.0 41 207-250 172-212 (217)
289 2oyr_A UPF0341 protein YHIQ; a 24.2 23 0.00079 31.9 1.0 19 32-50 90-108 (258)
290 3pvc_A TRNA 5-methylaminomethy 24.2 38 0.0013 34.4 2.8 23 29-51 57-79 (689)
291 2a33_A Hypothetical protein; s 22.6 64 0.0022 28.2 3.6 41 207-250 150-190 (215)
292 2qfm_A Spermine synthase; sper 21.9 93 0.0032 29.5 4.8 21 29-49 187-207 (364)
293 3mf7_A CIS-3-chloroacrylic aci 21.8 1.1E+02 0.0036 25.1 4.6 43 41-84 9-51 (149)
294 3qua_A Putative uncharacterize 20.8 53 0.0018 28.4 2.7 41 207-250 158-198 (199)
295 3k0b_A Predicted N6-adenine-sp 20.8 46 0.0016 31.6 2.5 20 31-50 202-221 (393)
296 1q1h_A TFE, transcription fact 20.4 37 0.0013 25.5 1.4 42 209-250 48-93 (110)
No 1
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=100.00 E-value=3.5e-91 Score=683.26 Aligned_cols=321 Identities=29% Similarity=0.466 Sum_probs=278.4
Q ss_pred ChhhhhhhHHHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCC
Q 040129 1 RLATNVTKDHIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQS 80 (333)
Q Consensus 1 ~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP 80 (333)
|+++..+||++++||.+++... .++ .+++++|||||||+|+||+.+++.||++|+++|.+...++++|+|||||||||
T Consensus 25 ~~~~~~~~~~~~~ai~~l~~~~-~~~-~~~~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp 102 (384)
T 2efj_A 25 NLFLIRVKPVLEQCIQELLRAN-LPN-INKCFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLF 102 (384)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTT-CTT-TTTEEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCT
T ss_pred HHHHHHHHHHHHHHHHHhhhcc-cCC-cCCceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCC
Confidence 5788999999999999988643 111 13389999999999999999999999999999865212345789999999999
Q ss_pred CCchHHHhhcCCcc------------ccceeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCce
Q 040129 81 SNDFNTLFTSLPQE------------IHFFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRI 148 (333)
Q Consensus 81 ~NDFn~lF~~l~~~------------~~~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i 148 (333)
+||||+||++||.+ .+||++|||||||+||||++|+|++||++||||||++|+.+.++.|++||||+|
T Consensus 103 ~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i 182 (384)
T 2efj_A 103 QNDFNSVFKLLPSFYRNLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCI 182 (384)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCCCTTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCS
T ss_pred ccchHHHHhhhhhhHhhhhhhccCCCCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCce
Confidence 99999999999862 369999999999999999999999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEecCCCCC--CCCccchhhHHHHHHHHHHHHHHhccCCC
Q 040129 149 HYAFA-PEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITNPSIPDG--MPFSEIANGLMYNCMGTILYDMVKVGLLS 225 (333)
Q Consensus 149 ~~~~~-~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~gr~~~--~~~~~~~~~~~~~~l~~~l~~mv~eG~i~ 225 (333)
||+++ |++|.+||++||++||..||++|++||||||+||++++|+++. ++.++ +.|.++|++|+.||+|+
T Consensus 183 ~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~-------~~l~~al~~lv~eGli~ 255 (384)
T 2efj_A 183 YSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEFDHPNSM-------DLLEMSINDLVIEGHLE 255 (384)
T ss_dssp SSCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCCTTTCCCCHH-------HHHHHHHHHHHHHTSSC
T ss_pred EecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCCcccCcccH-------HHHHHHHHHHHHhCCcc
Confidence 99998 8999999999999999999999999999999999999999987 66543 39999999999999999
Q ss_pred HhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeC-CCCCC---cC--------------CCChhHHHHHHHHHhhh
Q 040129 226 EAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTN-PSPWL---KG--------------RINMPEYIKHVRAATES 287 (333)
Q Consensus 226 ~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~-p~~~~---~~--------------~~~~~~~a~~iRa~~e~ 287 (333)
++++|+||+|+|+||.+||+++|+++|+|+|+++|+++ +.... ++ ...|+.+++++||++||
T Consensus 256 ~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~~~a~~iRa~~ep 335 (384)
T 2efj_A 256 EEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFNAPYDAGFSIDDDYQGRSHSPVSCDEHARAAHVASVVRSIYEP 335 (384)
T ss_dssp HHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEEEEEEETTTTCCC---------CCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEEEEeecccccccccccccccccccccchHhHhHHHhhhhhHHhhhh
Confidence 99999999999999999999999999999999999986 11111 11 13568999999999999
Q ss_pred hhhhhcChHHHHHHHHHHHHHHHHhhhhhhhcCCCcEEEEEEEeeC
Q 040129 288 MFNKHFSYEVTEEMFRQLLERLEEINDKMVSCYRDGVQLFAVLQRL 333 (333)
Q Consensus 288 ~l~~hfgeei~delf~r~~~~l~~~~~~~~~~~~~~~~~~~~l~r~ 333 (333)
+|.+|||++++|++|+||++++++++.. ++.++++++++|+|+
T Consensus 336 ll~~hfG~~i~d~lF~ry~~~~~~~~~~---~~~~~~~~~~~L~k~ 378 (384)
T 2efj_A 336 ILASHFGEAILPDLSHRIAKNAAKVLRS---GKGFYDSVIISLAKK 378 (384)
T ss_dssp HHHHHHCSTTHHHHHHHHHHHHHHHHHH---TCCEEEEEEEEEEEC
T ss_pred hhHHhccHHHHHHHHHHHHHHHHHHHhh---CCCceEEEEEEEEEc
Confidence 9999999999999999999999999988 888899999999996
No 2
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=100.00 E-value=1e-91 Score=681.96 Aligned_cols=317 Identities=33% Similarity=0.522 Sum_probs=291.3
Q ss_pred ChhhhhhhHHHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCC-CCCcceEEecCC
Q 040129 1 RLATNVTKDHIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNS-QNPEFHVSFNDQ 79 (333)
Q Consensus 1 ~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~-~~~~~~v~~nDl 79 (333)
|+++..+||++++||.+++.... .+++++|||||||+|+||+.+++.||++|+++|.+.+ + ++||||||||||
T Consensus 26 ~~~~~~~~~~l~~ai~~~~~~~~----~~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~--~~~~pe~~v~~nDL 99 (359)
T 1m6e_X 26 RQVISITKPITEAAITALYSGDT----VTTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMG--RENSPEYQIFLNDL 99 (359)
T ss_dssp HHHHHHTHHHHHHHHHHHHSSSS----SSSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSS--CSSCCEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHhhccC----CCCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcC--CCCCCceEEEecCC
Confidence 46889999999999999886421 3678999999999999999999999999999997653 3 588999999999
Q ss_pred CCCchHHHhhcCCcc----ccceeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCC-C
Q 040129 80 SSNDFNTLFTSLPQE----IHFFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFA-P 154 (333)
Q Consensus 80 P~NDFn~lF~~l~~~----~~~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~-~ 154 (333)
|+||||+||++||.+ ++||++|||||||+||||++|+|++||++||||||++|+.+.+ |||+|||+++ |
T Consensus 100 p~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~------nkg~i~~~~~~p 173 (359)
T 1m6e_X 100 PGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIES------NKGNIYMANTCP 173 (359)
T ss_dssp TTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCC------CTTTTSSCSSSC
T ss_pred CchHHHHHHHhcchhcccCCCEEEEecchhhhhccCCCCceEEEEehhhhhhcccCchhhhc------cCCceEecCCCC
Confidence 999999999999963 4699999999999999999999999999999999999999987 9999999998 8
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCc
Q 040129 155 EVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNL 234 (333)
Q Consensus 155 ~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~ 234 (333)
++|.+||++||++||..||++|++||||||+||++++||++.+++++ +++.+|+.|.++|++||.||+|++|++|+||+
T Consensus 174 ~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~-~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~ 252 (359)
T 1m6e_X 174 QSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRAST-ECCLIWQLLAMALNQMVSEGLIEEEKMDKFNI 252 (359)
T ss_dssp CTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEECSSSSSSST-TTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecCCCCCcccc-chHHHHHHHHHHHHHHHHccccchhhhhccCC
Confidence 99999999999999999999999999999999999999999988776 57778999999999999999999999999999
Q ss_pred CcccCCHHHHHHHHHhCCcEEEeEEEEeC----CCCCC-----cCCCChhHHHHHHHHHhhhhhhhhcChHHHHHHHHHH
Q 040129 235 PIYACPPGEFGAVVERNGNFRIEVMGLTN----PSPWL-----KGRINMPEYIKHVRAATESMFNKHFSYEVTEEMFRQL 305 (333)
Q Consensus 235 P~y~ps~~E~~~~ie~~G~F~I~~le~~~----p~~~~-----~~~~~~~~~a~~iRa~~e~~l~~hfgeei~delf~r~ 305 (333)
|+|+||.+||+++|+++|+|+|+++|+++ |.... +....|+.+++++||++||+|.+|||++++|++|+||
T Consensus 253 P~y~ps~~E~~~~ie~~G~F~i~~~e~~~~~~~~~~~~~d~~~~~~~~g~~~a~~~Ra~~e~ll~~hfG~~i~d~lf~ry 332 (359)
T 1m6e_X 253 PQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGDGGGSVEEEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRY 332 (359)
T ss_dssp CCBCCCSHHHHHHHHHTTTBCCEEEEEEEEETTCCSSCTTCCSSTTTTTTHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CccCCCHHHHHHHHHHcCCceEEEEEEEeeccCcccchhhhhhhhhHhHhHhhhhhhhhcchhhHHhccHHHHHHHHHHH
Confidence 99999999999999999999999999986 22110 0124788999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhcCCCcEEEEEEEeeC
Q 040129 306 LERLEEINDKMVSCYRDGVQLFAVLQRL 333 (333)
Q Consensus 306 ~~~l~~~~~~~~~~~~~~~~~~~~l~r~ 333 (333)
++++.+++.. ++.++++++++|+|+
T Consensus 333 ~~~~~~~~~~---~~~~~~~~~~~L~k~ 357 (359)
T 1m6e_X 333 KLLIIERMSK---EKTKFINVIVSLIRK 357 (359)
T ss_dssp HHHHHHHHHS---SCCEEEEEEEEEEBC
T ss_pred HHHHHHHHhh---CCCceEEEEEEEEeC
Confidence 9999999887 888899999999996
No 3
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=100.00 E-value=2.7e-89 Score=668.80 Aligned_cols=325 Identities=29% Similarity=0.507 Sum_probs=293.9
Q ss_pred ChhhhhhhHHHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCC
Q 040129 1 RLATNVTKDHIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQS 80 (333)
Q Consensus 1 ~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP 80 (333)
++++..+||++++||++++.... ..+++++|||||||+|+||+.+++.||++|+++|.+.+ .++|+|||+|||||
T Consensus 26 ~~~~~~~~~~~~~ai~~l~~~~~---~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~--~~~pe~~v~~nDLp 100 (374)
T 3b5i_A 26 AMHARSMLHLLEETLENVHLNSS---ASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAG--IDPPEFTAFFSDLP 100 (374)
T ss_dssp CTTHHHHHHHHHHHHHTSCCCCS---SSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTT--CCCCCEEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHhhcccc---CCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcC--CCCCceeEEecCCC
Confidence 56889999999999987654221 03678999999999999999999999999999998754 45889999999999
Q ss_pred CCchHHHhhcCCcc---------------ccceeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCC
Q 040129 81 SNDFNTLFTSLPQE---------------IHFFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNK 145 (333)
Q Consensus 81 ~NDFn~lF~~l~~~---------------~~~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nk 145 (333)
+||||+||++|+++ ++||++|||||||+||||++|+|+|||++||||||++|+.+.++.+|+|||
T Consensus 101 ~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nk 180 (374)
T 3b5i_A 101 SNDFNTLFQLLPPLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNR 180 (374)
T ss_dssp TSCHHHHHHHSCCBCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCT
T ss_pred ccchHHHHhhhhhhhhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccC
Confidence 99999999999974 359999999999999999999999999999999999999999999999999
Q ss_pred CceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEecCCCCCCCCccchhhHHH-HHHHHHHHHHHhccCC
Q 040129 146 GRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITNPSIPDGMPFSEIANGLMY-NCMGTILYDMVKVGLL 224 (333)
Q Consensus 146 g~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~-~~l~~~l~~mv~eG~i 224 (333)
|+|||++++|+|.+||++||++||..||++|++||||||+||++++|+++.+++++.+.+.+| ++|.++|++|+.||++
T Consensus 181 g~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i 260 (374)
T 3b5i_A 181 GRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLV 260 (374)
T ss_dssp TTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSS
T ss_pred CceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCc
Confidence 999999996669999999999999999999999999999999999999998888766788889 9999999999999999
Q ss_pred CHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeC-CCCCCcC-----CCChhHHHHHHHHHhhhhhhhhcChHHH
Q 040129 225 SEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTN-PSPWLKG-----RINMPEYIKHVRAATESMFNKHFSYEVT 298 (333)
Q Consensus 225 ~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~-p~~~~~~-----~~~~~~~a~~iRa~~e~~l~~hfgeei~ 298 (333)
+++++|+||+|+|+||.+||+++|+++|+|+|+++|+++ |.+.... ...|+.+++++||++||+|.+|||++++
T Consensus 261 ~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I~~le~~~~~~~~~~~~~~~~~~~g~~~a~~~Ra~~e~ll~~hfg~~i~ 340 (374)
T 3b5i_A 261 AAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKLVVYKGGSPLVVNEPDDASEVGRAFASSCRSVAGVLVEAHIGEELS 340 (374)
T ss_dssp CHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEEEEEEEEECCCCCCCSSTTCHHHHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred chhhcccCCccccCCCHHHHHHHHHhcCCcEEEEEEEEeecCCccccccchhHHHHHHHHHHHHHhccchhHhhccHHHH
Confidence 999999999999999999999999988889999999997 3221111 1367899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhcCCC--cEEEEEEEe
Q 040129 299 EEMFRQLLERLEEINDKMVSCYRD--GVQLFAVLQ 331 (333)
Q Consensus 299 delf~r~~~~l~~~~~~~~~~~~~--~~~~~~~l~ 331 (333)
|++|+||++++++++..+. ++.+ +++++++|+
T Consensus 341 d~lf~ry~~~~~~~~~~~~-~~~~~~~~~~~~~l~ 374 (374)
T 3b5i_A 341 NKLFSRVESRATSHAKDVL-VNLQFFHIVASLSFT 374 (374)
T ss_dssp HHHHHHHHHHHHHTCHHHH-TTCCCEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHhHHHhh-hccccceEEEEEEeC
Confidence 9999999999999998543 6666 789999885
No 4
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=99.23 E-value=1.2e-09 Score=100.62 Aligned_cols=201 Identities=16% Similarity=0.213 Sum_probs=126.4
Q ss_pred CcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCcccccc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKR 109 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~r 109 (333)
..-+|+|+||++|..+..+.. +..+|+-.|+-..=-...=+.++ .--|.. +.+..
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~-------------------~~~~v~gvD~s~~~~~~a~~~~~--~~~~~~---~d~~~- 111 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQ-------------------SGAEVLGTDNAATMIEKARQNYP--HLHFDV---ADARN- 111 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHH-------------------TTCEEEEEESCHHHHHHHHHHCT--TSCEEE---CCTTT-
T ss_pred CCCEEEEecCCCCHHHHHHHh-------------------CCCeEEEEECCHHHHHHHHhhCC--CCEEEE---CChhh-
Confidence 346999999999998876653 01234555542211111101111 001111 12222
Q ss_pred cCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEE
Q 040129 110 LFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIIT 189 (333)
Q Consensus 110 lfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~ 189 (333)
+-+++++|+++|+.++||+.. ...+|+.=++-|+|||++++.
T Consensus 112 ~~~~~~fD~v~~~~~l~~~~d--------------------------------------~~~~l~~~~~~LkpgG~l~~~ 153 (279)
T 3ccf_A 112 FRVDKPLDAVFSNAMLHWVKE--------------------------------------PEAAIASIHQALKSGGRFVAE 153 (279)
T ss_dssp CCCSSCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred CCcCCCcCEEEEcchhhhCcC--------------------------------------HHHHHHHHHHhcCCCcEEEEE
Confidence 223578999999999999642 112355555889999999999
Q ss_pred ecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeC-CCCCC
Q 040129 190 NPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTN-PSPWL 268 (333)
Q Consensus 190 ~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~-p~~~~ 268 (333)
..+.++. ..+.+.+...+... |.- ......|+++++.++++.++++.| |++..++.+. |....
T Consensus 154 ~~~~~~~--------~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~~~~~~~ 217 (279)
T 3ccf_A 154 FGGKGNI--------KYILEALYNALETL---GIH----NPQALNPWYFPSIGEYVNILEKQG-FDVTYAALFNRPTTLA 217 (279)
T ss_dssp EECTTTT--------HHHHHHHHHHHHHH---TCC----CGGGGCCCCCCCHHHHHHHHHHHT-EEEEEEEEEECCEECS
T ss_pred ecCCcch--------HHHHHHHHHHHHhc---CCc----cccCcCceeCCCHHHHHHHHHHcC-CEEEEEEEeccccccc
Confidence 8765431 12334444444332 321 233556788999999999999999 9998888775 33221
Q ss_pred cCCCChhHHHHHHHHHhhhhhhhhcChHHHHHHHHHHHHHHHHhh
Q 040129 269 KGRINMPEYIKHVRAATESMFNKHFSYEVTEEMFRQLLERLEEIN 313 (333)
Q Consensus 269 ~~~~~~~~~a~~iRa~~e~~l~~hfgeei~delf~r~~~~l~~~~ 313 (333)
.+.+.+..|++++..+++. .++++..+++.+++.+.+.+..
T Consensus 218 ---~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 258 (279)
T 3ccf_A 218 ---EGEFGMANWIQMFASAFLV-GLTPDQQVQLIRKVEATLQDKL 258 (279)
T ss_dssp ---SGGGHHHHHHHHHCHHHHT-TCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHhhHHHhc-cCCHHHHHHHHHHHHHHHHhhc
Confidence 1235788899988777776 4788888888888888887754
No 5
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=99.13 E-value=1.5e-09 Score=98.00 Aligned_cols=204 Identities=13% Similarity=0.162 Sum_probs=119.1
Q ss_pred CcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCcccccc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKR 109 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~r 109 (333)
...+|+|+||++|..+..+... + |..+|+..|+-..--...-+..+ ++ ..+.+.+..-
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~--------~---------~~~~v~~~D~s~~~~~~a~~~~~---~~--~~~~~d~~~~ 90 (259)
T 2p35_A 33 RVLNGYDLGCGPGNSTELLTDR--------Y---------GVNVITGIDSDDDMLEKAADRLP---NT--NFGKADLATW 90 (259)
T ss_dssp CCSSEEEETCTTTHHHHHHHHH--------H---------CTTSEEEEESCHHHHHHHHHHST---TS--EEEECCTTTC
T ss_pred CCCEEEEecCcCCHHHHHHHHh--------C---------CCCEEEEEECCHHHHHHHHHhCC---Cc--EEEECChhhc
Confidence 3468999999999988766532 1 12345555543322111111111 11 1122333332
Q ss_pred cCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEE
Q 040129 110 LFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIIT 189 (333)
Q Consensus 110 lfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~ 189 (333)
. |++++|+++|+.++||+.. ...+|+.-.+-|+|||++++.
T Consensus 91 ~-~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~~~ 131 (259)
T 2p35_A 91 K-PAQKADLLYANAVFQWVPD--------------------------------------HLAVLSQLMDQLESGGVLAVQ 131 (259)
T ss_dssp C-CSSCEEEEEEESCGGGSTT--------------------------------------HHHHHHHHGGGEEEEEEEEEE
T ss_pred C-ccCCcCEEEEeCchhhCCC--------------------------------------HHHHHHHHHHhcCCCeEEEEE
Confidence 2 7889999999999999632 223456666889999999999
Q ss_pred ecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhc-CCcCcccCCHHHHHHHHHhCCcEEEeEEEEeCCCCCC
Q 040129 190 NPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDS-FNLPIYACPPGEFGAVVERNGNFRIEVMGLTNPSPWL 268 (333)
Q Consensus 190 ~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~-fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p~~~~ 268 (333)
..+..+. ..... +.++...+...+. ... ...+..+++.+++.+.+++.| |+|+..+........
T Consensus 132 ~~~~~~~---------~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~~~~~~~ 196 (259)
T 2p35_A 132 MPDNLQE---------PTHIA----MHETADGGPWKDA-FSGGGLRRKPLPPPSDYFNALSPKS-SRVDVWHTVYNHPMK 196 (259)
T ss_dssp EECCTTS---------HHHHH----HHHHHHHSTTGGG-C-------CCCCCHHHHHHHHGGGE-EEEEEEEEEEEEEES
T ss_pred eCCCCCc---------HHHHH----HHHHhcCcchHHH-hccccccccCCCCHHHHHHHHHhcC-CceEEEEEEeeeccC
Confidence 8653221 11122 2222222111111 111 123567789999999999999 987666543211111
Q ss_pred cCCCChhHHHHHHHHHh-hhhhhhhcChHHHHHHHHHHHHHHHHhhh
Q 040129 269 KGRINMPEYIKHVRAAT-ESMFNKHFSYEVTEEMFRQLLERLEEIND 314 (333)
Q Consensus 269 ~~~~~~~~~a~~iRa~~-e~~l~~hfgeei~delf~r~~~~l~~~~~ 314 (333)
+.+.+..|+++.. .+++. .++++..+++.+++.+.+.+.+.
T Consensus 197 ----~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 238 (259)
T 2p35_A 197 ----DADSIVEWVKGTGLRPYLA-AAGEENREAFLADYTRRIAAAYP 238 (259)
T ss_dssp ----CHHHHHHHHTTTTTTHHHH-TTCGGGHHHHHHHHHHHHHHHSC
T ss_pred ----CchHHhhhhhcCcchHHHH-hCCHHHHHHHHHHHHHHHHHhCC
Confidence 2367788888764 34444 57888889998889888887654
No 6
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=99.02 E-value=5e-09 Score=94.56 Aligned_cols=205 Identities=12% Similarity=0.112 Sum_probs=119.0
Q ss_pred CCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCc-cccceeeccCcccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQ-EIHFFVAGVPGSFH 107 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~-~~~~f~~~vpgSFy 107 (333)
...-+|+|+||++|..+..+... ..+|+-.|.-..--...-+.+.. ..+ +..+.+++.
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~-------------------~~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~d~~ 96 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIAR-------------------GYRYIALDADAAMLEVFRQKIAGVDRK--VQVVQADAR 96 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTT-------------------TCEEEEEESCHHHHHHHHHHTTTSCTT--EEEEESCTT
T ss_pred CCCCEEEEeCCcCCHHHHHHHHC-------------------CCEEEEEECCHHHHHHHHHHhhccCCc--eEEEEcccc
Confidence 34579999999999999876531 01233333321111111111100 001 111222332
Q ss_pred cccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEE
Q 040129 108 KRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMII 187 (333)
Q Consensus 108 ~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mv 187 (333)
.--+|++++|+++++.++||+.. ...+|+.=.+-|+|||+++
T Consensus 97 ~~~~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~ 138 (263)
T 2yqz_A 97 AIPLPDESVHGVIVVHLWHLVPD--------------------------------------WPKVLAEAIRVLKPGGALL 138 (263)
T ss_dssp SCCSCTTCEEEEEEESCGGGCTT--------------------------------------HHHHHHHHHHHEEEEEEEE
T ss_pred cCCCCCCCeeEEEECCchhhcCC--------------------------------------HHHHHHHHHHHCCCCcEEE
Confidence 22367889999999999999642 1223445557899999999
Q ss_pred EEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeC-CCC
Q 040129 188 ITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTN-PSP 266 (333)
Q Consensus 188 l~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~-p~~ 266 (333)
+.+...+ .. ......+.+...+..+ |.- ...+.++.+.+++.+.+++.| |++...+... +..
T Consensus 139 ~~~~~~~-~~-----~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~~~~ 201 (263)
T 2yqz_A 139 EGWDQAE-AS-----PEWTLQERWRAFAAEE---GFP-------VERGLHAKRLKEVEEALRRLG-LKPRTREVARWREE 201 (263)
T ss_dssp EEEEEEC-CC-----HHHHHHHHHHHHHHHH---TCC-------CCCCHHHHHHHHHHHHHHHTT-CCCEEEEEEEEEEE
T ss_pred EEecCCC-cc-----HHHHHHHHHHHHHHHh---CCC-------cccccccCCHHHHHHHHHHcC-CCcceEEEeeeecC
Confidence 9943321 11 0011223333333222 311 122456678999999999999 9987776553 111
Q ss_pred CCcCCCChhHHHHHHHHHhhhhhhhhcChHHHHHHHHHHHHHHHHhhhh
Q 040129 267 WLKGRINMPEYIKHVRAATESMFNKHFSYEVTEEMFRQLLERLEEINDK 315 (333)
Q Consensus 267 ~~~~~~~~~~~a~~iRa~~e~~l~~hfgeei~delf~r~~~~l~~~~~~ 315 (333)
...+.+..++++.+.+.+. +++++..+++.+++.+.+.+....
T Consensus 202 -----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 244 (263)
T 2yqz_A 202 -----RTPREALEALSERLYSFTQ-GLPEPVHARVMERLWAWAEAELGD 244 (263)
T ss_dssp -----ECHHHHHHHHHTTCSGGGS-SSCHHHHHHHHHHHHHHHHHHSSC
T ss_pred -----CCHHHHHHHHHHhhccccc-CCCHHHHHHHHHHHHHHHHHhcCC
Confidence 1236677777766666554 688888899989998888877543
No 7
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=98.94 E-value=3.2e-07 Score=83.39 Aligned_cols=183 Identities=12% Similarity=0.128 Sum_probs=104.7
Q ss_pred CcEEEEeecCCCCcccHHHHH-------------HHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCcccc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQ-------------DLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIH 96 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~-------------~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~ 96 (333)
...+|+|+||++|..+..+.. ..++..+++....+. ...+.+...
T Consensus 61 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~---~~~~~~~~~------------------- 118 (273)
T 3bus_A 61 SGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGL---ANRVTFSYA------------------- 118 (273)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTC---TTTEEEEEC-------------------
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCC---CcceEEEEC-------------------
Confidence 357999999999999887764 223333333322110 112333333
Q ss_pred ceeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhh
Q 040129 97 FFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNR 176 (333)
Q Consensus 97 ~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~R 176 (333)
++..--+|++++|+++|+.++||+.. ...+|+.-
T Consensus 119 --------d~~~~~~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~ 152 (273)
T 3bus_A 119 --------DAMDLPFEDASFDAVWALESLHHMPD--------------------------------------RGRALREM 152 (273)
T ss_dssp --------CTTSCCSCTTCEEEEEEESCTTTSSC--------------------------------------HHHHHHHH
T ss_pred --------ccccCCCCCCCccEEEEechhhhCCC--------------------------------------HHHHHHHH
Confidence 33332367889999999999999632 12345666
Q ss_pred hhhhccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEE
Q 040129 177 AKEIVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRI 256 (333)
Q Consensus 177 a~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I 256 (333)
.+-|+|||++++......+... . .. ...+..+.. .+. ..+.++.+++.+.+++.| |++
T Consensus 153 ~~~L~pgG~l~i~~~~~~~~~~--~-----~~---~~~~~~~~~----------~~~-~~~~~~~~~~~~~l~~aG-f~~ 210 (273)
T 3bus_A 153 ARVLRPGGTVAIADFVLLAPVE--G-----AK---KEAVDAFRA----------GGG-VLSLGGIDEYESDVRQAE-LVV 210 (273)
T ss_dssp HTTEEEEEEEEEEEEEESSCCC--H-----HH---HHHHHHHHH----------HHT-CCCCCCHHHHHHHHHHTT-CEE
T ss_pred HHHcCCCeEEEEEEeeccCCCC--h-----hH---HHHHHHHHh----------hcC-ccCCCCHHHHHHHHHHcC-CeE
Confidence 6889999999998765543211 1 11 111111110 011 225689999999999999 999
Q ss_pred eEEEEeCCCCCCcCCCChhHHHHHHHHHhhhhhhhhcChHHHHHHHHHHHH
Q 040129 257 EVMGLTNPSPWLKGRINMPEYIKHVRAATESMFNKHFSYEVTEEMFRQLLE 307 (333)
Q Consensus 257 ~~le~~~p~~~~~~~~~~~~~a~~iRa~~e~~l~~hfgeei~delf~r~~~ 307 (333)
...+.+.+..+. .-..+...+++.... +...+|++..+.+.+.+..
T Consensus 211 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 256 (273)
T 3bus_A 211 TSTVDISAQARP----SLVKTAEAFENARSQ-VEPFMGAEGLDRMIATFRG 256 (273)
T ss_dssp EEEEECHHHHTT----HHHHHHHHHHHTHHH-HHHHHCHHHHHHHHHHHHH
T ss_pred EEEEECcHhHHH----HHHHHHHHHHHhHHH-HHhhcCHHHHHHHHHHHHH
Confidence 888776421111 001222223333223 3345777776666665554
No 8
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=98.91 E-value=3.1e-08 Score=88.19 Aligned_cols=168 Identities=15% Similarity=0.139 Sum_probs=104.8
Q ss_pred CCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCccccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHK 108 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~ 108 (333)
.+..+|+|+||++|..+..+... .|..+|+.-|+-..-....=+.++...+ +..+.+.+..
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~-----------------~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~d~~~ 103 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEK-----------------YPEATFTLVDMSEKMLEIAKNRFRGNLK--VKYIEADYSK 103 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHH-----------------CTTCEEEEEESCHHHHHHHHHHTCSCTT--EEEEESCTTT
T ss_pred CCCCeEEEecCCCCHHHHHHHHh-----------------CCCCeEEEEECCHHHHHHHHHhhccCCC--EEEEeCchhc
Confidence 44689999999999988766532 1234455555533222222222222111 2223344544
Q ss_pred ccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEE
Q 040129 109 RLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIII 188 (333)
Q Consensus 109 rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl 188 (333)
-.++ +++|+++++.++||++. .+...+|+.=.+-|+|||++++
T Consensus 104 ~~~~-~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~~ 146 (234)
T 3dtn_A 104 YDFE-EKYDMVVSALSIHHLED------------------------------------EDKKELYKRSYSILKESGIFIN 146 (234)
T ss_dssp CCCC-SCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCCC-CCceEEEEeCccccCCH------------------------------------HHHHHHHHHHHHhcCCCcEEEE
Confidence 4455 89999999999999632 1223345555688999999999
Q ss_pred EecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCC---cCcccCCHHHHHHHHHhCCcEEEeEEEE
Q 040129 189 TNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFN---LPIYACPPGEFGAVVERNGNFRIEVMGL 261 (333)
Q Consensus 189 ~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn---~P~y~ps~~E~~~~ie~~G~F~I~~le~ 261 (333)
.-...++.. .........|.....++-.+.+++..+. --.+.++.+|+.++++++| |++..+..
T Consensus 147 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG-F~~v~~~~ 213 (234)
T 3dtn_A 147 ADLVHGETA--------FIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAG-FRDVSCIY 213 (234)
T ss_dssp EEECBCSSH--------HHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHHHHHTT-CEEEEEEE
T ss_pred EEecCCCCh--------hhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHHHHHcC-CCceeeee
Confidence 876654321 2335556677777777667776655321 2235568999999999999 98776653
No 9
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=98.89 E-value=2.9e-07 Score=82.82 Aligned_cols=199 Identities=17% Similarity=0.160 Sum_probs=112.5
Q ss_pred CcEEEEeecCCCCcccHHHHHH-------------HHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCcccc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQD-------------LIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIH 96 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~-------------ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~ 96 (333)
..-+|+|+||++|..+..+... .++..+++....+. +..+++...|.
T Consensus 46 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~~~d~----------------- 105 (257)
T 3f4k_A 46 DDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANC---ADRVKGITGSM----------------- 105 (257)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTC---TTTEEEEECCT-----------------
T ss_pred CCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCC---CCceEEEECCh-----------------
Confidence 3469999999999998877632 23333333222110 11133333332
Q ss_pred ceeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhh
Q 040129 97 FFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNR 176 (333)
Q Consensus 97 ~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~R 176 (333)
..--+|++++|+++|+.++||+. |. .+|+.=
T Consensus 106 ----------~~~~~~~~~fD~v~~~~~l~~~~--~~-------------------------------------~~l~~~ 136 (257)
T 3f4k_A 106 ----------DNLPFQNEELDLIWSEGAIYNIG--FE-------------------------------------RGMNEW 136 (257)
T ss_dssp ----------TSCSSCTTCEEEEEEESCSCCCC--HH-------------------------------------HHHHHH
T ss_pred ----------hhCCCCCCCEEEEEecChHhhcC--HH-------------------------------------HHHHHH
Confidence 22226788999999999999961 11 134444
Q ss_pred hhhhccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEE
Q 040129 177 AKEIVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRI 256 (333)
Q Consensus 177 a~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I 256 (333)
.+-|+|||++++........... ..+...|... .| ..++.+++...+++.| |++
T Consensus 137 ~~~L~pgG~l~~~~~~~~~~~~~---------~~~~~~~~~~---------------~~-~~~~~~~~~~~l~~aG-f~~ 190 (257)
T 3f4k_A 137 SKYLKKGGFIAVSEASWFTSERP---------AEIEDFWMDA---------------YP-EISVIPTCIDKMERAG-YTP 190 (257)
T ss_dssp HTTEEEEEEEEEEEEEESSSCCC---------HHHHHHHHHH---------------CT-TCCBHHHHHHHHHHTT-EEE
T ss_pred HHHcCCCcEEEEEEeeccCCCCh---------HHHHHHHHHh---------------CC-CCCCHHHHHHHHHHCC-CeE
Confidence 57899999999997543322211 1122223221 12 1568999999999999 998
Q ss_pred eEEEEeCCCCCCcCCCChhHHHHHHHHHhhhhhhhhcChHHHHHHHHHHHHHHHHhhhhhhhcCCCcEEEEEEEeeC
Q 040129 257 EVMGLTNPSPWLKGRINMPEYIKHVRAATESMFNKHFSYEVTEEMFRQLLERLEEINDKMVSCYRDGVQLFAVLQRL 333 (333)
Q Consensus 257 ~~le~~~p~~~~~~~~~~~~~a~~iRa~~e~~l~~hfgeei~delf~r~~~~l~~~~~~~~~~~~~~~~~~~~l~r~ 333 (333)
.....+....|.+. +...++...+.+...+-++...+++.++..+..... .. ....+-..+++++|+
T Consensus 191 v~~~~~~~~~w~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~g~~~~v~~k~ 257 (257)
T 3f4k_A 191 TAHFILPENCWTEH------YFAPQDEVRETFMKEHAGNKTAMDFMKGQQYERSLY-SK---YKDYYGYVFYIGQKR 257 (257)
T ss_dssp EEEEECCGGGTCCC------CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HH---HTTTEEEEEEEEEEC
T ss_pred EEEEECChhhHHHH------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-HH---hCCccceEEEEEecC
Confidence 88766643344311 111233333344444445556666666655554433 22 333345677777775
No 10
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=98.84 E-value=2.2e-07 Score=86.34 Aligned_cols=203 Identities=13% Similarity=0.120 Sum_probs=112.2
Q ss_pred CcEEEEeecCCCCcccHHHHHH-------------HHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCcccc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQD-------------LIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIH 96 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~-------------ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~ 96 (333)
..-+|+|+||++|..+..+... .++..+++....+. +..+++...|.
T Consensus 72 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~---~~~v~~~~~d~----------------- 131 (302)
T 3hem_A 72 PGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDS---PRRKEVRIQGW----------------- 131 (302)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCC---SSCEEEEECCG-----------------
T ss_pred CcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC---CCceEEEECCH-----------------
Confidence 3569999999999999877643 23333333322110 11233333332
Q ss_pred ceeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhh
Q 040129 97 FFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNR 176 (333)
Q Consensus 97 ~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~R 176 (333)
- .+ ++++|+++|+.++|++... .... | .+++..+|+.=
T Consensus 132 ----------~-~~--~~~fD~v~~~~~~~~~~d~-~~~~---------~-------------------~~~~~~~l~~~ 169 (302)
T 3hem_A 132 ----------E-EF--DEPVDRIVSLGAFEHFADG-AGDA---------G-------------------FERYDTFFKKF 169 (302)
T ss_dssp ----------G-GC--CCCCSEEEEESCGGGTTCC-SSCC---------C-------------------TTHHHHHHHHH
T ss_pred ----------H-Hc--CCCccEEEEcchHHhcCcc-cccc---------c-------------------hhHHHHHHHHH
Confidence 1 11 5789999999999996552 1110 0 14566778888
Q ss_pred hhhhccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCc-ccCCHHHHHHHHHhCCcEE
Q 040129 177 AKEIVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPI-YACPPGEFGAVVERNGNFR 255 (333)
Q Consensus 177 a~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~-y~ps~~E~~~~ie~~G~F~ 255 (333)
.+-|+|||++++......+...... .+..+..-...+.+.. ..+.+|. +.|+.+|+...+++.| |+
T Consensus 170 ~~~LkpgG~l~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----------~~~~~p~~~~~s~~~~~~~l~~aG-f~ 236 (302)
T 3hem_A 170 YNLTPDDGRMLLHTITIPDKEEAQE--LGLTSPMSLLRFIKFI----------LTEIFPGGRLPRISQVDYYSSNAG-WK 236 (302)
T ss_dssp HHSSCTTCEEEEEEEECCCHHHHHH--HTCCCCHHHHHHHHHH----------HHHTCTTCCCCCHHHHHHHHHHHT-CE
T ss_pred HHhcCCCcEEEEEEEeccCccchhh--ccccccccccchHHHH----------HHhcCCCCCCCCHHHHHHHHHhCC-cE
Confidence 8999999999999876543210000 0000000000111111 1223443 7799999999999999 99
Q ss_pred EeEEEEeCCCCCCcCCCChhHHHHHHHHHhhh--hhhhhcChHHHHHHHHHHHHHHHHhhhh
Q 040129 256 IEVMGLTNPSPWLKGRINMPEYIKHVRAATES--MFNKHFSYEVTEEMFRQLLERLEEINDK 315 (333)
Q Consensus 256 I~~le~~~p~~~~~~~~~~~~~a~~iRa~~e~--~l~~hfgeei~delf~r~~~~l~~~~~~ 315 (333)
+..++.+.++ +++.+..|.+.+... -+.+.+|++..+ .+..|-..++.....
T Consensus 237 ~~~~~~~~~~-------y~~tl~~w~~~~~~~~~~~~~~~~~~~~~-~w~~yl~~~~~~f~~ 290 (302)
T 3hem_A 237 VERYHRIGAN-------YVPTLNAWADALQAHKDEAIALKGQETCD-IYMHYLRGCSDLFRD 290 (302)
T ss_dssp EEEEEECGGG-------HHHHHHHHHHHHHHTHHHHHHHHCHHHHH-HHHHHHHHHHHHHHT
T ss_pred EEEEEeCchh-------HHHHHHHHHHHHHHhHHHHHHHhCHHHHH-HHHHHHHHHHHHHhC
Confidence 9888776311 234455554444332 223345655443 455555555544443
No 11
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=98.82 E-value=2e-07 Score=83.99 Aligned_cols=194 Identities=14% Similarity=0.111 Sum_probs=105.5
Q ss_pred CCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCccccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHK 108 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~ 108 (333)
....+|+|+||++|..+..+.... ..+|+--|+...=....=+......+ +..+.+.+..
T Consensus 54 ~~~~~vLdiG~G~G~~~~~l~~~~------------------~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~d~~~ 113 (266)
T 3ujc_A 54 NENSKVLDIGSGLGGGCMYINEKY------------------GAHTHGIDICSNIVNMANERVSGNNK--IIFEANDILT 113 (266)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH------------------CCEEEEEESCHHHHHHHHHTCCSCTT--EEEEECCTTT
T ss_pred CCCCEEEEECCCCCHHHHHHHHHc------------------CCEEEEEeCCHHHHHHHHHHhhcCCC--eEEEECcccc
Confidence 345799999999999988776431 01233333321111111111111000 1112222333
Q ss_pred ccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEE
Q 040129 109 RLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIII 188 (333)
Q Consensus 109 rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl 188 (333)
--+|++++|+++|+.++||++. .|...+|+.=.+-|+|||++++
T Consensus 114 ~~~~~~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l~~ 157 (266)
T 3ujc_A 114 KEFPENNFDLIYSRDAILALSL------------------------------------ENKNKLFQKCYKWLKPTGTLLI 157 (266)
T ss_dssp CCCCTTCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCCCcEEEEeHHHHHHhcCh------------------------------------HHHHHHHHHHHHHcCCCCEEEE
Confidence 3467899999999999999621 3455666766788999999999
Q ss_pred EecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeCCCCCC
Q 040129 189 TNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTNPSPWL 268 (333)
Q Consensus 189 ~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p~~~~ 268 (333)
.....+...... ..+...+. ..| ...++.+++...+++.| |++...+.+.+.
T Consensus 158 ~~~~~~~~~~~~--------~~~~~~~~---~~~-------------~~~~~~~~~~~~l~~~G-f~~~~~~~~~~~--- 209 (266)
T 3ujc_A 158 TDYCATEKENWD--------DEFKEYVK---QRK-------------YTLITVEEYADILTACN-FKNVVSKDLSDY--- 209 (266)
T ss_dssp EEEEESCGGGCC--------HHHHHHHH---HHT-------------CCCCCHHHHHHHHHHTT-CEEEEEEECHHH---
T ss_pred EEeccCCcccch--------HHHHHHHh---cCC-------------CCCCCHHHHHHHHHHcC-CeEEEEEeCCHH---
Confidence 977654421111 11121111 111 24678999999999999 998877755311
Q ss_pred cCCCChhHHHHHHHHHhh--hhhhhhcChHHHHHHHHHHHHHHH
Q 040129 269 KGRINMPEYIKHVRAATE--SMFNKHFSYEVTEEMFRQLLERLE 310 (333)
Q Consensus 269 ~~~~~~~~~a~~iRa~~e--~~l~~hfgeei~delf~r~~~~l~ 310 (333)
+...+..|.+.+.. .-+.+.++++..+.+.+.....+.
T Consensus 210 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (266)
T 3ujc_A 210 ----WNQLLEVEHKYLHENKEEFLKLFSEKKFISLDDGWSRKIK 249 (266)
T ss_dssp ----HHHHHHHHHHHHHHTHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhCHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 11233344443322 112234666555555444444443
No 12
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=98.82 E-value=5.8e-07 Score=81.77 Aligned_cols=177 Identities=16% Similarity=0.141 Sum_probs=101.1
Q ss_pred CCcEEEEeecCCCCcccHHHHH-------------HHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQ-------------DLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEI 95 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~-------------~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~ 95 (333)
+..-+|+|+||++|..++.+.. ..++..+++....+ -++.+.+...|.
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~---------------- 105 (267)
T 3kkz_A 45 TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSG---LQNRVTGIVGSM---------------- 105 (267)
T ss_dssp CTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECCT----------------
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcC---CCcCcEEEEcCh----------------
Confidence 4467999999999998877652 22333333322211 011233333332
Q ss_pred cceeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHh
Q 040129 96 HFFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNN 175 (333)
Q Consensus 96 ~~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~ 175 (333)
..--+|++++|+++|+.++|++ . | ..+|+.
T Consensus 106 -----------~~~~~~~~~fD~i~~~~~~~~~-~-~-------------------------------------~~~l~~ 135 (267)
T 3kkz_A 106 -----------DDLPFRNEELDLIWSEGAIYNI-G-F-------------------------------------ERGLNE 135 (267)
T ss_dssp -----------TSCCCCTTCEEEEEESSCGGGT-C-H-------------------------------------HHHHHH
T ss_pred -----------hhCCCCCCCEEEEEEcCCceec-C-H-------------------------------------HHHHHH
Confidence 2223578899999999999996 1 1 123455
Q ss_pred hhhhhccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEE
Q 040129 176 RAKEIVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFR 255 (333)
Q Consensus 176 Ra~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~ 255 (333)
=.+-|+|||++++........... ..+...|.+ . .| ..++.+++...+++.| |+
T Consensus 136 ~~~~LkpgG~l~~~~~~~~~~~~~---------~~~~~~~~~----~-----------~~-~~~~~~~~~~~l~~aG-f~ 189 (267)
T 3kkz_A 136 WRKYLKKGGYLAVSECSWFTDERP---------AEINDFWMD----A-----------YP-EIDTIPNQVAKIHKAG-YL 189 (267)
T ss_dssp HGGGEEEEEEEEEEEEEESSSCCC---------HHHHHHHHH----H-----------CT-TCEEHHHHHHHHHHTT-EE
T ss_pred HHHHcCCCCEEEEEEeeecCCCCh---------HHHHHHHHH----h-----------CC-CCCCHHHHHHHHHHCC-CE
Confidence 558899999999987653322211 112222321 1 12 4578999999999999 99
Q ss_pred EeEEEEeCCCCCCcCCCChhHHHHHHHHHhhhhhhhhcChHHHHHHHHHHH
Q 040129 256 IEVMGLTNPSPWLKGRINMPEYIKHVRAATESMFNKHFSYEVTEEMFRQLL 306 (333)
Q Consensus 256 I~~le~~~p~~~~~~~~~~~~~a~~iRa~~e~~l~~hfgeei~delf~r~~ 306 (333)
+...+.+....|. +.+...+..|+ +.+...+-..+.+.++.++..
T Consensus 190 ~v~~~~~~~~~w~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 234 (267)
T 3kkz_A 190 PVATFILPENCWT--DHYFTPKVAAQ----KIFLTKYAGNKIAEEFSMLQS 234 (267)
T ss_dssp EEEEEECCGGGTT--TTTHHHHHHHH----HHHHHHTTTCHHHHHHHHHHH
T ss_pred EEEEEECCHhHHH--HHHHHHHHHHH----HHHHHhcCCCHHHHHHHHHHH
Confidence 9888776544443 11233333444 444443333344445444444
No 13
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=98.79 E-value=1.7e-06 Score=79.29 Aligned_cols=153 Identities=11% Similarity=0.147 Sum_probs=87.1
Q ss_pred CCcEEEEeecCCCCcccHHHHH-------------HHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQ-------------DLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEI 95 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~-------------~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~ 95 (333)
....+|+|+||++|..+..+.. ..++..+++....+ ..+.+++...|.
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~---------------- 123 (287)
T 1kpg_A 63 QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSE---NLRSKRVLLAGW---------------- 123 (287)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCC---CCSCEEEEESCG----------------
T ss_pred CCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC---CCCCeEEEECCh----------------
Confidence 3356999999999998887763 23333333332211 012333333332
Q ss_pred cceeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHh
Q 040129 96 HFFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNN 175 (333)
Q Consensus 96 ~~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~ 175 (333)
- . +| +++|+++|..++|++.. .|...+|+.
T Consensus 124 -----------~-~-~~-~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~ 153 (287)
T 1kpg_A 124 -----------E-Q-FD-EPVDRIVSIGAFEHFGH------------------------------------ERYDAFFSL 153 (287)
T ss_dssp -----------G-G-CC-CCCSEEEEESCGGGTCT------------------------------------TTHHHHHHH
T ss_pred -----------h-h-CC-CCeeEEEEeCchhhcCh------------------------------------HHHHHHHHH
Confidence 1 1 24 77999999999999642 123445566
Q ss_pred hhhhhccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcC-cccCCHHHHHHHHHhCCcE
Q 040129 176 RAKEIVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLP-IYACPPGEFGAVVERNGNF 254 (333)
Q Consensus 176 Ra~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P-~y~ps~~E~~~~ie~~G~F 254 (333)
=.+-|+|||++++......+.......+....+.. ..+.+..... ..| ...|+.+|+...+++.| |
T Consensus 154 ~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----------~~~~~~~~s~~~~~~~l~~aG-f 220 (287)
T 1kpg_A 154 AHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTF--ARFLKFIVTE----------IFPGGRLPSIPMVQECASANG-F 220 (287)
T ss_dssp HHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHH--HHHHHHHHHH----------TSTTCCCCCHHHHHHHHHTTT-C
T ss_pred HHHhcCCCCEEEEEEecCCCccccccccccccccc--cchhhhHHhe----------eCCCCCCCCHHHHHHHHHhCC-c
Confidence 66889999999999876543110000000000000 0111111111 112 24579999999999999 9
Q ss_pred EEeEEEEeC
Q 040129 255 RIEVMGLTN 263 (333)
Q Consensus 255 ~I~~le~~~ 263 (333)
++...+.+.
T Consensus 221 ~~~~~~~~~ 229 (287)
T 1kpg_A 221 TVTRVQSLQ 229 (287)
T ss_dssp EEEEEEECH
T ss_pred EEEEEEeCc
Confidence 998887653
No 14
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=98.75 E-value=1.4e-07 Score=87.11 Aligned_cols=148 Identities=15% Similarity=0.262 Sum_probs=84.2
Q ss_pred CcEEEEeecCCCCcccHHHHH----------------HHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQ----------------DLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQ 93 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~----------------~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~ 93 (333)
..-+|+|+||++|..++.+.. ..|+..+++....+ ....+++...|..
T Consensus 70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~---~~~~v~~~~~D~~------------- 133 (261)
T 4gek_A 70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK---APTPVDVIEGDIR------------- 133 (261)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSC---CSSCEEEEESCTT-------------
T ss_pred CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhc---cCceEEEeecccc-------------
Confidence 346999999999998877652 23333343333221 1123444444432
Q ss_pred cccceeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHH
Q 040129 94 EIHFFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFL 173 (333)
Q Consensus 94 ~~~~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL 173 (333)
+ +|-.+.|+++|+++|||+.. .|...+|
T Consensus 134 --------------~--~~~~~~d~v~~~~~l~~~~~------------------------------------~~~~~~l 161 (261)
T 4gek_A 134 --------------D--IAIENASMVVLNFTLQFLEP------------------------------------SERQALL 161 (261)
T ss_dssp --------------T--CCCCSEEEEEEESCGGGSCH------------------------------------HHHHHHH
T ss_pred --------------c--ccccccccceeeeeeeecCc------------------------------------hhHhHHH
Confidence 1 24456899999999999632 2334456
Q ss_pred HhhhhhhccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHh-ccCCCHhhhh----cCCcCcccCCHHHHHHHH
Q 040129 174 NNRAKEIVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVK-VGLLSEAQVD----SFNLPIYACPPGEFGAVV 248 (333)
Q Consensus 174 ~~Ra~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~-eG~i~~~~~d----~fn~P~y~ps~~E~~~~i 248 (333)
+.=.+-|+|||+|++.=....... ...+.+...+.+... .|+- +.++. ...-.....|.+|++..+
T Consensus 162 ~~i~~~LkpGG~lii~e~~~~~~~--------~~~~~~~~~~~~~~~~~g~s-~~ei~~~~~~l~~~~~~~s~~~~~~~L 232 (261)
T 4gek_A 162 DKIYQGLNPGGALVLSEKFSFEDA--------KVGELLFNMHHDFKRANGYS-ELEISQKRSMLENVMLTDSVETHKARL 232 (261)
T ss_dssp HHHHHHEEEEEEEEEEEEBCCSSH--------HHHHHHHHHHHHHHHHTTGG-GSTTHHHHHHHHHHCCCBCHHHHHHHH
T ss_pred HHHHHHcCCCcEEEEEeccCCCCH--------HHHHHHHHHHHHHHHHcCCC-HHHHHHHHhhhcccccCCCHHHHHHHH
Confidence 666688999999998744333221 122333333333322 2332 22211 111122335899999999
Q ss_pred HhCCcEE
Q 040129 249 ERNGNFR 255 (333)
Q Consensus 249 e~~G~F~ 255 (333)
+++| |+
T Consensus 233 ~~AG-F~ 238 (261)
T 4gek_A 233 HKAG-FE 238 (261)
T ss_dssp HHHT-CS
T ss_pred HHcC-CC
Confidence 9999 86
No 15
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=98.71 E-value=9.1e-08 Score=83.22 Aligned_cols=143 Identities=15% Similarity=0.085 Sum_probs=91.4
Q ss_pred cEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCccccccc
Q 040129 31 TIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKRL 110 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~rl 110 (333)
.-+|+|+||++|..+..+... ..+|+--|.-..=-...=+..+ + +..+-+.+..--
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~-------------------~~~v~gvD~s~~~~~~a~~~~~---~--~~~~~~d~~~~~ 97 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL-------------------GHQIEGLEPATRLVELARQTHP---S--VTFHHGTITDLS 97 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT-------------------TCCEEEECCCHHHHHHHHHHCT---T--SEEECCCGGGGG
T ss_pred CCeEEEecCCCCHHHHHHHhc-------------------CCeEEEEeCCHHHHHHHHHhCC---C--CeEEeCcccccc
Confidence 468999999999988766532 0134444442110000000111 1 112233443334
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEe
Q 040129 111 FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
+|++++|+++++.++||++. .|...+|+.=++-|+|||++++..
T Consensus 98 ~~~~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l~i~~ 141 (203)
T 3h2b_A 98 DSPKRWAGLLAWYSLIHMGP------------------------------------GELPDALVALRMAVEDGGGLLMSF 141 (203)
T ss_dssp GSCCCEEEEEEESSSTTCCT------------------------------------TTHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCCeEEEEehhhHhcCCH------------------------------------HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 67899999999999999642 234455666678899999999998
Q ss_pred cCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeCC
Q 040129 191 PSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTNP 264 (333)
Q Consensus 191 ~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p 264 (333)
....... .+.....+.+..+.+|++.++++.| |++..++.+.+
T Consensus 142 ~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~ 184 (203)
T 3h2b_A 142 FSGPSLE------------------------------PMYHPVATAYRWPLPELAQALETAG-FQVTSSHWDPR 184 (203)
T ss_dssp ECCSSCE------------------------------EECCSSSCEEECCHHHHHHHHHHTT-EEEEEEEECTT
T ss_pred ccCCchh------------------------------hhhchhhhhccCCHHHHHHHHHHCC-CcEEEEEecCC
Confidence 6654311 1122234667889999999999999 99999998763
No 16
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=98.68 E-value=1.4e-07 Score=82.92 Aligned_cols=156 Identities=16% Similarity=0.178 Sum_probs=92.1
Q ss_pred cEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCccccccc
Q 040129 31 TIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKRL 110 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~rl 110 (333)
..+|+|+||++|..+..+... ..+|+--|.-..--...=+.++ .+ +..+-+.+..-.
T Consensus 46 ~~~vLDiGcG~G~~~~~l~~~-------------------~~~v~~vD~s~~~~~~a~~~~~--~~--~~~~~~d~~~~~ 102 (220)
T 3hnr_A 46 FGNVLEFGVGTGNLTNKLLLA-------------------GRTVYGIEPSREMRMIAKEKLP--KE--FSITEGDFLSFE 102 (220)
T ss_dssp CSEEEEECCTTSHHHHHHHHT-------------------TCEEEEECSCHHHHHHHHHHSC--TT--CCEESCCSSSCC
T ss_pred CCeEEEeCCCCCHHHHHHHhC-------------------CCeEEEEeCCHHHHHHHHHhCC--Cc--eEEEeCChhhcC
Confidence 469999999999988766531 1235555543221111111122 01 112233444444
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEe
Q 040129 111 FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
+| +++|+++++.++||+.. .+...+|+.=.+-|+|||++++..
T Consensus 103 ~~-~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~i~~ 145 (220)
T 3hnr_A 103 VP-TSIDTIVSTYAFHHLTD------------------------------------DEKNVAIAKYSQLLNKGGKIVFAD 145 (220)
T ss_dssp CC-SCCSEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CC-CCeEEEEECcchhcCCh------------------------------------HHHHHHHHHHHHhcCCCCEEEEEe
Confidence 55 89999999999999533 111234555668899999999996
Q ss_pred cCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEe
Q 040129 191 PSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLT 262 (333)
Q Consensus 191 ~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~ 262 (333)
....+. ......+..+...|... +..-..+.++++.+|++.+++++| |+|...+..
T Consensus 146 ~~~~~~------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~ 201 (220)
T 3hnr_A 146 TIFADQ------------DAYDKTVEAAKQRGFHQ---LANDLQTEYYTRIPVMQTIFENNG-FHVTFTRLN 201 (220)
T ss_dssp ECBSSH------------HHHHHHHHHHHHTTCHH---HHHHHHHSCCCBHHHHHHHHHHTT-EEEEEEECS
T ss_pred ccccCh------------HHHHHHHHHHHhCCCcc---chhhcchhhcCCHHHHHHHHHHCC-CEEEEeecc
Confidence 544321 11222233333444321 111123457789999999999999 998887754
No 17
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=98.64 E-value=4.9e-07 Score=79.66 Aligned_cols=111 Identities=11% Similarity=0.100 Sum_probs=69.4
Q ss_pred cCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEE
Q 040129 110 LFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIIT 189 (333)
Q Consensus 110 lfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~ 189 (333)
-+|++++|+++++.++|++.. | .+...+|+.=.+-|+|||++++.
T Consensus 96 ~~~~~~~D~v~~~~~l~~~~~-~----------------------------------~~~~~~l~~~~~~L~pgG~l~~~ 140 (235)
T 3sm3_A 96 SFHDSSFDFAVMQAFLTSVPD-P----------------------------------KERSRIIKEVFRVLKPGAYLYLV 140 (235)
T ss_dssp CSCTTCEEEEEEESCGGGCCC-H----------------------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCCceeEEEEcchhhcCCC-H----------------------------------HHHHHHHHHHHHHcCCCeEEEEE
Confidence 467899999999999999543 1 12334566666889999999999
Q ss_pred ecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcC--CcCcccCCHHHHHHHHHhCCcEEEeEEEEeC
Q 040129 190 NPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSF--NLPIYACPPGEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 190 ~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~f--n~P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 263 (333)
..++....+ .........+.....+|.......... ....++++.+|++.+++++| |++..++...
T Consensus 141 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aG-f~~~~~~~~~ 208 (235)
T 3sm3_A 141 EFGQNWHLK-------LYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCR-FEIDYFRVKE 208 (235)
T ss_dssp EEBCCTTSH-------HHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCHHHHHHHHHTTT-EEEEEEEEEE
T ss_pred ECCcchhHH-------HHHHHhhhhccchhhhcceEecccccCCcceeeEeCCHHHHHHHHHHcC-CEEEEEEecc
Confidence 877643221 112222222222222221111100111 22346789999999999999 9999988654
No 18
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=98.62 E-value=8.5e-07 Score=81.43 Aligned_cols=102 Identities=19% Similarity=0.211 Sum_probs=64.3
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEe
Q 040129 111 FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
++++++|+++++.++||+... ..+|+.=++-|+|||++++..
T Consensus 132 ~~~~~fD~v~~~~~l~~~~~~--------------------------------------~~~l~~~~~~LkpgG~l~~~~ 173 (285)
T 4htf_A 132 HLETPVDLILFHAVLEWVADP--------------------------------------RSVLQTLWSVLRPGGVLSLMF 173 (285)
T ss_dssp GCSSCEEEEEEESCGGGCSCH--------------------------------------HHHHHHHHHTEEEEEEEEEEE
T ss_pred hcCCCceEEEECchhhcccCH--------------------------------------HHHHHHHHHHcCCCeEEEEEE
Confidence 578899999999999996321 124555568899999999998
Q ss_pred cCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeC
Q 040129 191 PSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 191 ~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 263 (333)
...... .....+...|.. ...+..... .....+.++.+.+|++.+++++| |++...+.+.
T Consensus 174 ~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~aG-f~v~~~~~~~ 233 (285)
T 4htf_A 174 YNAHGL---------LMHNMVAGNFDY-VQAGMPKKK--KRTLSPDYPRDPTQVYLWLEEAG-WQIMGKTGVR 233 (285)
T ss_dssp EBHHHH---------HHHHHHTTCHHH-HHTTCCCC------CCCSCCBCHHHHHHHHHHTT-CEEEEEEEES
T ss_pred eCCchH---------HHHHHHhcCHHH-Hhhhccccc--cccCCCCCCCCHHHHHHHHHHCC-CceeeeeeEE
Confidence 654210 011111111222 222222111 11234557789999999999999 9999888775
No 19
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=98.60 E-value=9.6e-07 Score=79.03 Aligned_cols=146 Identities=16% Similarity=0.172 Sum_probs=90.2
Q ss_pred CCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCccccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHK 108 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~ 108 (333)
+..-+|+|+||++|..+..+.+. + .+|+-.|+-..=.. ..+.. +..+.+....
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~~~------------~-------~~v~gvD~s~~~~~-~a~~~-------~~~~~~d~~~ 92 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEE------------G-------IESIGVDINEDMIK-FCEGK-------FNVVKSDAIE 92 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHHHH------------T-------CCEEEECSCHHHHH-HHHTT-------SEEECSCHHH
T ss_pred cCCCeEEEEeCCCCHHHHHHHhC------------C-------CcEEEEECCHHHHH-HHHhh-------cceeeccHHH
Confidence 34578999999999987654321 0 12455554221111 11100 1222233322
Q ss_pred c--cCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceE
Q 040129 109 R--LFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMI 186 (333)
Q Consensus 109 r--lfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~m 186 (333)
- -+|++++|+++|+.++||+.. .|+..+|+.=.+-|+|||++
T Consensus 93 ~~~~~~~~~fD~i~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l 136 (240)
T 3dli_A 93 YLKSLPDKYLDGVMISHFVEHLDP------------------------------------ERLFELLSLCYSKMKYSSYI 136 (240)
T ss_dssp HHHTSCTTCBSEEEEESCGGGSCG------------------------------------GGHHHHHHHHHHHBCTTCCE
T ss_pred HhhhcCCCCeeEEEECCchhhCCc------------------------------------HHHHHHHHHHHHHcCCCcEE
Confidence 1 468899999999999999642 24555677777899999999
Q ss_pred EEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeCCC
Q 040129 187 IITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTNPS 265 (333)
Q Consensus 187 vl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p~ 265 (333)
++...+... .... ... .+ ..--.+..+.++++.++++.| |++...+.+.|.
T Consensus 137 ~~~~~~~~~-----------~~~~-~~~--------~~-------~~~~~~~~~~~~l~~~l~~aG-f~~~~~~~~~~~ 187 (240)
T 3dli_A 137 VIESPNPTS-----------LYSL-INF--------YI-------DPTHKKPVHPETLKFILEYLG-FRDVKIEFFEEC 187 (240)
T ss_dssp EEEEECTTS-----------HHHH-HHH--------TT-------STTCCSCCCHHHHHHHHHHHT-CEEEEEEEECCC
T ss_pred EEEeCCcch-----------hHHH-HHH--------hc-------CccccccCCHHHHHHHHHHCC-CeEEEEEEeccC
Confidence 998865321 1111 111 01 111235678899999999999 999999888754
No 20
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=98.59 E-value=6.4e-07 Score=79.81 Aligned_cols=140 Identities=16% Similarity=0.144 Sum_probs=86.8
Q ss_pred EEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccc-cceeeccCccccccc
Q 040129 32 IRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEI-HFFVAGVPGSFHKRL 110 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~-~~f~~~vpgSFy~rl 110 (333)
-+|+|+||++|..+..+.. +..+|+..|.-..=-...-+.++... .--+..+-+.+.. +
T Consensus 68 ~~vLDiGcG~G~~~~~l~~-------------------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~ 127 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMAS-------------------PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFT-W 127 (235)
T ss_dssp EEEEEETCTTCHHHHHHCB-------------------TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTT-C
T ss_pred CCEEEeCCCCCHHHHHHHh-------------------CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhc-C
Confidence 5999999999998876531 12335555543221111111111100 0012222333333 4
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEe
Q 040129 111 FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
.|+.++|+++++.++||+. . .|...+|+.=++-|+|||++++..
T Consensus 128 ~~~~~fD~v~~~~~l~~~~---~---------------------------------~~~~~~l~~~~~~LkpgG~l~~~~ 171 (235)
T 3lcc_A 128 RPTELFDLIFDYVFFCAIE---P---------------------------------EMRPAWAKSMYELLKPDGELITLM 171 (235)
T ss_dssp CCSSCEEEEEEESSTTTSC---G---------------------------------GGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCeeEEEEChhhhcCC---H---------------------------------HHHHHHHHHHHHHCCCCcEEEEEE
Confidence 4677999999999999963 1 233445666668899999999876
Q ss_pred cCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeC
Q 040129 191 PSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 191 ~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 263 (333)
...... ...|.|..+.+|++.++++.| |++..++...
T Consensus 172 ~~~~~~-----------------------------------~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~ 208 (235)
T 3lcc_A 172 YPITDH-----------------------------------VGGPPYKVDVSTFEEVLVPIG-FKAVSVEENP 208 (235)
T ss_dssp CCCSCC-----------------------------------CSCSSCCCCHHHHHHHHGGGT-EEEEEEEECT
T ss_pred eccccc-----------------------------------CCCCCccCCHHHHHHHHHHcC-CeEEEEEecC
Confidence 543311 112345578999999999999 9999988775
No 21
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=98.56 E-value=1.4e-05 Score=73.59 Aligned_cols=153 Identities=14% Similarity=0.098 Sum_probs=86.2
Q ss_pred CCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccc-cceeeccCcccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEI-HFFVAGVPGSFH 107 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~-~~f~~~vpgSFy 107 (333)
....+|+|+||++|..+..+.... ..+|+.-|+...=-...=+.+.... .--+..+.+++.
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~------------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 142 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKF------------------GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL 142 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH------------------CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTT
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHh------------------CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcc
Confidence 345799999999999888765421 0123333332110000000000000 000111223444
Q ss_pred cccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEE
Q 040129 108 KRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMII 187 (333)
Q Consensus 108 ~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mv 187 (333)
.--+|++++|++++..++||+.. | ..+|+.=.+-|+|||+++
T Consensus 143 ~~~~~~~~fD~v~~~~~l~~~~~-~-------------------------------------~~~l~~~~~~LkpgG~l~ 184 (297)
T 2o57_A 143 EIPCEDNSYDFIWSQDAFLHSPD-K-------------------------------------LKVFQECARVLKPRGVMA 184 (297)
T ss_dssp SCSSCTTCEEEEEEESCGGGCSC-H-------------------------------------HHHHHHHHHHEEEEEEEE
T ss_pred cCCCCCCCEeEEEecchhhhcCC-H-------------------------------------HHHHHHHHHHcCCCeEEE
Confidence 33467899999999999999643 1 123455557899999999
Q ss_pred EEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEe
Q 040129 188 ITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLT 262 (333)
Q Consensus 188 l~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~ 262 (333)
+......+.... . .+...+..+ ..| ..++.+++...++++| |++...+.+
T Consensus 185 ~~~~~~~~~~~~-----~----~~~~~~~~~--------------~~~-~~~~~~~~~~~l~~aG-f~~~~~~~~ 234 (297)
T 2o57_A 185 ITDPMKEDGIDK-----S----SIQPILDRI--------------KLH-DMGSLGLYRSLAKECG-LVTLRTFSR 234 (297)
T ss_dssp EEEEEECTTCCG-----G----GGHHHHHHH--------------TCS-SCCCHHHHHHHHHHTT-EEEEEEEEC
T ss_pred EEEeccCCCCch-----H----HHHHHHHHh--------------cCC-CCCCHHHHHHHHHHCC-CeEEEEEEC
Confidence 997665433211 0 111111111 122 3568999999999999 998877755
No 22
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=98.55 E-value=5.4e-07 Score=82.43 Aligned_cols=86 Identities=23% Similarity=0.188 Sum_probs=61.4
Q ss_pred CCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEecC
Q 040129 113 EKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITNPS 192 (333)
Q Consensus 113 ~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g 192 (333)
..++|+|+|+.+|||+..-+ .|+...|+.=++=|||||+|++....
T Consensus 154 ~~~fD~V~~~~~l~~i~~~~----------------------------------~~~~~~l~~i~r~LKPGG~li~~~~~ 199 (263)
T 2a14_A 154 LPLADCVLTLLAMECACCSL----------------------------------DAYRAALCNLASLLKPGGHLVTTVTL 199 (263)
T ss_dssp CCCEEEEEEESCHHHHCSSH----------------------------------HHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred cCCCCEeeehHHHHHhcCCH----------------------------------HHHHHHHHHHHHHcCCCcEEEEEEee
Confidence 56899999999999965421 34556677777899999999998643
Q ss_pred CCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeC
Q 040129 193 IPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 193 r~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 263 (333)
..+. . . .|- -.++.+..+.+|+...++++| |++..++...
T Consensus 200 ~~~~-------~--~-------------~g~--------~~~~~~~~~~~~l~~~l~~aG-F~i~~~~~~~ 239 (263)
T 2a14_A 200 RLPS-------Y--M-------------VGK--------REFSCVALEKGEVEQAVLDAG-FDIEQLLHSP 239 (263)
T ss_dssp SCCE-------E--E-------------ETT--------EEEECCCCCHHHHHHHHHHTT-EEEEEEEEEC
T ss_pred cCcc-------c--e-------------eCC--------eEeeccccCHHHHHHHHHHCC-CEEEEEeecc
Confidence 2210 0 0 110 123445669999999999999 9999888763
No 23
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=98.55 E-value=1.3e-06 Score=76.80 Aligned_cols=150 Identities=9% Similarity=0.016 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHHH------------HHHHHHHHHhhhcCC----C----
Q 040129 7 TKDHIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAMQ------------DLIEIVKHKYKSQCP----N---- 66 (333)
Q Consensus 7 ~~~~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~------------~ii~~i~~~~~~~~~----~---- 66 (333)
..|.+.+-+..+. .+..-+|.|+||++|.++..+.+ ..|+..+++...... +
T Consensus 7 ~~~~l~~~~~~l~--------~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~ 78 (203)
T 1pjz_A 7 VNKDLQQYWSSLN--------VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKV 78 (203)
T ss_dssp STHHHHHHHHHHC--------CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEE
T ss_pred CCHHHHHHHHhcc--------cCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCccccccccccc
Confidence 4556666555321 13346999999999999988763 344544443211000 0
Q ss_pred CCCCcceEEecCCCCCchHHHhhcCCccccceeeccCcccccccCCC-CceeEEEeccccccccCCCccccCCCCCCCCC
Q 040129 67 SQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKRLFPE-KFLHLVHVSYALHWLSKVPEGLLDKNSPAWNK 145 (333)
Q Consensus 67 ~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~rlfP~-~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nk 145 (333)
...+.++++..|...-+ +++ +++|++++..++||+. .
T Consensus 79 ~~~~~v~~~~~d~~~l~---------------------------~~~~~~fD~v~~~~~l~~l~---~------------ 116 (203)
T 1pjz_A 79 YAAPGIEIWCGDFFALT---------------------------ARDIGHCAAFYDRAAMIALP---A------------ 116 (203)
T ss_dssp EECSSSEEEEECCSSST---------------------------HHHHHSEEEEEEESCGGGSC---H------------
T ss_pred ccCCccEEEECccccCC---------------------------cccCCCEEEEEECcchhhCC---H------------
Confidence 00123444444443222 222 6799999999999963 1
Q ss_pred CceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCC
Q 040129 146 GRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLS 225 (333)
Q Consensus 146 g~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~ 225 (333)
.|...+|+.=++-|+|||++++.....+. +
T Consensus 117 ---------------------~~~~~~l~~~~r~LkpgG~~~l~~~~~~~--------------------------~--- 146 (203)
T 1pjz_A 117 ---------------------DMRERYVQHLEALMPQACSGLLITLEYDQ--------------------------A--- 146 (203)
T ss_dssp ---------------------HHHHHHHHHHHHHSCSEEEEEEEEESSCS--------------------------S---
T ss_pred ---------------------HHHHHHHHHHHHHcCCCcEEEEEEEecCc--------------------------c---
Confidence 12334455556889999995555432210 0
Q ss_pred HhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeC
Q 040129 226 EAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 226 ~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 263 (333)
...-|.|..+.+|++..++. | |+++.++..+
T Consensus 147 -----~~~~~~~~~~~~el~~~~~~-g-f~i~~~~~~~ 177 (203)
T 1pjz_A 147 -----LLEGPPFSVPQTWLHRVMSG-N-WEVTKVGGQD 177 (203)
T ss_dssp -----SSSSCCCCCCHHHHHHTSCS-S-EEEEEEEESS
T ss_pred -----ccCCCCCCCCHHHHHHHhcC-C-cEEEEecccc
Confidence 01123355789999999998 8 9999888765
No 24
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=98.50 E-value=1.5e-06 Score=80.38 Aligned_cols=89 Identities=9% Similarity=0.106 Sum_probs=57.2
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEe
Q 040129 111 FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
||++++|+|+++.+|||+...+ .+|+.=.+-|+|||++++..
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~~--------------------------------------~~l~~~~r~LkpgG~l~i~~ 172 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDIP--------------------------------------ATLKFFHSLLGTNAKMLIIV 172 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCHH--------------------------------------HHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCceeEEEEeeeeeecCCHH--------------------------------------HHHHHHHHHcCCCcEEEEEE
Confidence 5789999999999999964422 22444457899999999987
Q ss_pred cCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEE
Q 040129 191 PSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMG 260 (333)
Q Consensus 191 ~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le 260 (333)
...+. .|. ..|..... . +.. .-...+++.+|+...+++.| |++...+
T Consensus 173 ~~~~~-----------~~~---~~~~~~~~-~-~~~------~~~~~~~~~~~~~~~l~~aG-f~~~~~~ 219 (292)
T 2aot_A 173 VSGSS-----------GWD---KLWKKYGS-R-FPQ------DDLCQYITSDDLTQMLDNLG-LKYECYD 219 (292)
T ss_dssp ECTTS-----------HHH---HHHHHHGG-G-SCC------CTTCCCCCHHHHHHHHHHHT-CCEEEEE
T ss_pred ecCCc-----------cHH---HHHHHHHH-h-ccC------CCcccCCCHHHHHHHHHHCC-CceEEEE
Confidence 54321 111 11222211 1 000 01235678999999999999 9877644
No 25
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=98.50 E-value=1.8e-06 Score=77.29 Aligned_cols=148 Identities=14% Similarity=0.215 Sum_probs=86.5
Q ss_pred CCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCccccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHK 108 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~ 108 (333)
....+|+|+||++|..+..+..... -+|+..|.-..--...=+.+....+ +..+.+.+..
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~~------------------~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~d~~~ 151 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKLY------------------ATTDLLEPVKHMLEEAKRELAGMPV--GKFILASMET 151 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHC------------------SEEEEEESCHHHHHHHHHHTTTSSE--EEEEESCGGG
T ss_pred cCCCEEEEECCCcCHHHHHHHHhhc------------------CEEEEEeCCHHHHHHHHHHhccCCc--eEEEEccHHH
Confidence 3467999999999998877654310 0122222211100000001110001 1112223333
Q ss_pred ccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEE
Q 040129 109 RLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIII 188 (333)
Q Consensus 109 rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl 188 (333)
--+|++++|+++++.++|+++. .|+..+|+.-.+-|+|||++++
T Consensus 152 ~~~~~~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~i 195 (254)
T 1xtp_A 152 ATLPPNTYDLIVIQWTAIYLTD------------------------------------ADFVKFFKHCQQALTPNGYIFF 195 (254)
T ss_dssp CCCCSSCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCCCCeEEEEEcchhhhCCH------------------------------------HHHHHHHHHHHHhcCCCeEEEE
Confidence 2367889999999999999632 2445567777788999999999
Q ss_pred EecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeC
Q 040129 189 TNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 189 ~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 263 (333)
.......... ......+.+.++.++++.++++.| |++...+...
T Consensus 196 ~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~ 239 (254)
T 1xtp_A 196 KENCSTGDRF------------------------------LVDKEDSSLTRSDIHYKRLFNESG-VRVVKEAFQE 239 (254)
T ss_dssp EEEBC--CCE------------------------------EEETTTTEEEBCHHHHHHHHHHHT-CCEEEEEECT
T ss_pred EecCCCcccc------------------------------eecccCCcccCCHHHHHHHHHHCC-CEEEEeeecC
Confidence 8753221110 000122345679999999999999 9998887664
No 26
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=98.48 E-value=2.6e-06 Score=76.96 Aligned_cols=94 Identities=17% Similarity=0.312 Sum_probs=60.5
Q ss_pred cCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEE
Q 040129 110 LFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIIT 189 (333)
Q Consensus 110 lfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~ 189 (333)
-||++++|+++|+.++||+... ..+|+.=.+-|+|||++++.
T Consensus 98 ~~~~~~fD~V~~~~~l~~~~d~--------------------------------------~~~l~~~~r~LkpgG~l~~~ 139 (260)
T 1vl5_A 98 PFTDERFHIVTCRIAAHHFPNP--------------------------------------ASFVSEAYRVLKKGGQLLLV 139 (260)
T ss_dssp CSCTTCEEEEEEESCGGGCSCH--------------------------------------HHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCCCEEEEEEhhhhHhcCCH--------------------------------------HHHHHHHHHHcCCCCEEEEE
Confidence 3688999999999999996431 12344445789999999998
Q ss_pred ecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeC
Q 040129 190 NPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 190 ~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 263 (333)
....++. ..++.+...+..+. + .......+.+++.+++++.| |++..++.+.
T Consensus 140 ~~~~~~~---------~~~~~~~~~~~~~~----------~--~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~ 191 (260)
T 1vl5_A 140 DNSAPEN---------DAFDVFYNYVEKER----------D--YSHHRAWKKSDWLKMLEEAG-FELEELHCFH 191 (260)
T ss_dssp EEEBCSS---------HHHHHHHHHHHHHH----------C--TTCCCCCBHHHHHHHHHHHT-CEEEEEEEEE
T ss_pred EcCCCCC---------HHHHHHHHHHHHhc----------C--ccccCCCCHHHHHHHHHHCC-CeEEEEEEee
Confidence 6544321 11122222222111 0 01123468999999999999 9988887664
No 27
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=98.45 E-value=1.3e-05 Score=74.62 Aligned_cols=100 Identities=8% Similarity=0.046 Sum_probs=60.4
Q ss_pred CceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEecCC
Q 040129 114 KFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITNPSI 193 (333)
Q Consensus 114 ~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~gr 193 (333)
+++|+++|..++|++.. .|...+|+.=.+-|+|||++++.....
T Consensus 154 ~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 197 (318)
T 2fk8_A 154 EPVDRIVSIEAFEHFGH------------------------------------ENYDDFFKRCFNIMPADGRMTVQSSVS 197 (318)
T ss_dssp CCCSEEEEESCGGGTCG------------------------------------GGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred CCcCEEEEeChHHhcCH------------------------------------HHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 67999999999999632 133445666668899999999998766
Q ss_pred CCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcC-cccCCHHHHHHHHHhCCcEEEeEEEEe
Q 040129 194 PDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLP-IYACPPGEFGAVVERNGNFRIEVMGLT 262 (333)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P-~y~ps~~E~~~~ie~~G~F~I~~le~~ 262 (333)
.+...... .+.-...-...+.+...+ ...| .+.|+.+|+...+++.| |++...+.+
T Consensus 198 ~~~~~~~~--~~~~~~~~~~~~~~~~~~----------~~~~~~~~~s~~~~~~~l~~aG-f~~~~~~~~ 254 (318)
T 2fk8_A 198 YHPYEMAA--RGKKLSFETARFIKFIVT----------EIFPGGRLPSTEMMVEHGEKAG-FTVPEPLSL 254 (318)
T ss_dssp CCHHHHHT--TCHHHHHHHHHHHHHHHH----------HTSTTCCCCCHHHHHHHHHHTT-CBCCCCEEC
T ss_pred CCchhhhh--ccccccccccchhhHHHH----------hcCCCCcCCCHHHHHHHHHhCC-CEEEEEEec
Confidence 44210000 000000001111111111 1223 46679999999999999 988766554
No 28
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=98.44 E-value=6e-05 Score=68.26 Aligned_cols=166 Identities=10% Similarity=0.015 Sum_probs=91.0
Q ss_pred CcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCc-----hHHHhh-cCCcc---ccceee
Q 040129 30 NTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSND-----FNTLFT-SLPQE---IHFFVA 100 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~ND-----Fn~lF~-~l~~~---~~~f~~ 100 (333)
..-+|+|+||++|..+..+... + .|..+|+--|+-... .-...+ .+... .++ .
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~--------~--------g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v--~ 104 (275)
T 3bkx_A 43 PGEKILEIGCGQGDLSAVLADQ--------V--------GSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRL--T 104 (275)
T ss_dssp TTCEEEEESCTTSHHHHHHHHH--------H--------CTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGE--E
T ss_pred CCCEEEEeCCCCCHHHHHHHHH--------h--------CCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCce--E
Confidence 3469999999999988766532 1 123456666765441 111111 11110 111 1
Q ss_pred ccCcc-ccc--ccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhh
Q 040129 101 GVPGS-FHK--RLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRA 177 (333)
Q Consensus 101 ~vpgS-Fy~--rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra 177 (333)
.+.+. +.. .-+|++++|+++|+.++|++.... .+++...
T Consensus 105 ~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~--------------------------------------~~~~~~~ 146 (275)
T 3bkx_A 105 VHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASAN--------------------------------------ALALLFK 146 (275)
T ss_dssp EECSCCTTTCCGGGTTCCCSEEEEESCGGGSSCHH--------------------------------------HHHHHHH
T ss_pred EEECChhhhccCCCCCCCEEEEEEccchhhCCCHH--------------------------------------HHHHHHH
Confidence 12222 322 225788999999999999954310 1233333
Q ss_pred hhhccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEe
Q 040129 178 KEIVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIE 257 (333)
Q Consensus 178 ~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~ 257 (333)
.=++|||++++.-.......+. ....++..+...+...... +........+|.++++..++++| |++.
T Consensus 147 ~l~~~gG~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~s~~~l~~~l~~aG-f~~~ 214 (275)
T 3bkx_A 147 NMAAVCDHVDVAEWSMQPTALD---QIGHLQAAMIQGLLYAIAP--------SDVANIRTLITPDTLAQIAHDNT-WTYT 214 (275)
T ss_dssp HHTTTCSEEEEEEECSSCSSGG---GHHHHHHHHHHHHHHHHSC--------CTTCSCCCCCCHHHHHHHHHHHT-CEEE
T ss_pred HHhCCCCEEEEEEecCCCCchh---hhhHHHHHHHHHHHhhccc--------cccccccccCCHHHHHHHHHHCC-CeeE
Confidence 3345699999987665543211 1112222222211111110 11233446799999999999999 9998
Q ss_pred EEEEeC
Q 040129 258 VMGLTN 263 (333)
Q Consensus 258 ~le~~~ 263 (333)
+.+.+.
T Consensus 215 ~~~~~~ 220 (275)
T 3bkx_A 215 AGTIVE 220 (275)
T ss_dssp ECCCBC
T ss_pred EEEEec
Confidence 887663
No 29
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=98.44 E-value=1.5e-06 Score=81.25 Aligned_cols=160 Identities=14% Similarity=0.219 Sum_probs=92.0
Q ss_pred CcEEEEeecCCCCcccHHHHH-------------HHHHHHHHHhhhcCCC---CCCCcceEEecCCCCCchHHHhhcCCc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQ-------------DLIEIVKHKYKSQCPN---SQNPEFHVSFNDQSSNDFNTLFTSLPQ 93 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~-------------~ii~~i~~~~~~~~~~---~~~~~~~v~~nDlP~NDFn~lF~~l~~ 93 (333)
...+|+|+||++|..+..+.. ..++..++++...... .....+++...|...-+.
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~--------- 104 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELL--------- 104 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCS---------
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccch---------
Confidence 457999999999999887663 3344444433221000 001234444444332110
Q ss_pred cccceeeccCcccccccC--CCCceeEEEeccccccc-cCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHH
Q 040129 94 EIHFFVAGVPGSFHKRLF--PEKFLHLVHVSYALHWL-SKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLE 170 (333)
Q Consensus 94 ~~~~f~~~vpgSFy~rlf--P~~Sv~~~~Ss~alHWL-S~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~ 170 (333)
.+-+ |++++|+++|+.++||+ ... .|..
T Consensus 105 --------------~~~~~~~~~~fD~V~~~~~l~~~~~~~-----------------------------------~~~~ 135 (313)
T 3bgv_A 105 --------------IDKFRDPQMCFDICSCQFVCHYSFESY-----------------------------------EQAD 135 (313)
T ss_dssp --------------TTTCSSTTCCEEEEEEETCGGGGGGSH-----------------------------------HHHH
T ss_pred --------------hhhcccCCCCEEEEEEecchhhccCCH-----------------------------------HHHH
Confidence 0113 34599999999999996 211 3445
Q ss_pred HHHHhhhhhhccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHh--cc-------CCCHhhh------------
Q 040129 171 RFLNNRAKEIVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVK--VG-------LLSEAQV------------ 229 (333)
Q Consensus 171 ~FL~~Ra~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~--eG-------~i~~~~~------------ 229 (333)
.+|+.=++-|+|||.+++..++.. .+++ .|...-. -| ..+.+++
T Consensus 136 ~~l~~~~~~LkpgG~li~~~~~~~-----------~l~~----~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~f~l~ 200 (313)
T 3bgv_A 136 MMLRNACERLSPGGYFIGTTPNSF-----------ELIR----RLEASETESFGNEIYTVKFQKKGDYPLFGCKYDFNLE 200 (313)
T ss_dssp HHHHHHHTTEEEEEEEEEEEECHH-----------HHHH----HHTTSSSSEEECSSEEEEESCSSCCCSSCCEEEEEEC
T ss_pred HHHHHHHHHhCCCcEEEEecCChH-----------HHHH----HHHhhccCccCCeeEEEEeCCCCCCCCccceEEEEEC
Confidence 667777788999999999987531 1111 1111000 01 0011111
Q ss_pred hcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeC
Q 040129 230 DSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 230 d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 263 (333)
.....|.|..+.+++.+++++.| |++...+.|.
T Consensus 201 ~~~~~~~~~~~~~~~~~l~~~~G-~~~v~~~~f~ 233 (313)
T 3bgv_A 201 GVVDVPEFLVYFPLLNEMAKKYN-MKLVYKKTFL 233 (313)
T ss_dssp ---CCEEECCCHHHHHHHGGGGT-EEEEEEEEHH
T ss_pred CcccCcceEEcHHHHHHHHHHcC-cEEEEecCHH
Confidence 23456778889999999999999 9988877664
No 30
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=98.41 E-value=9.7e-06 Score=77.97 Aligned_cols=154 Identities=16% Similarity=0.137 Sum_probs=93.3
Q ss_pred CCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCccccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHK 108 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~ 108 (333)
++.-+|+|+||++|..+..+.+ + -|..++..-|+|. .........+ +.-+.|+|+.
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~--------~---------~p~~~~~~~D~~~-----~~~~a~~~~~--v~~~~~d~~~ 257 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVA--------K---------YPSINAINFDLPH-----VIQDAPAFSG--VEHLGGDMFD 257 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHH--------H---------CTTCEEEEEECHH-----HHTTCCCCTT--EEEEECCTTT
T ss_pred cCCCEEEEeCCCcCHHHHHHHH--------h---------CCCCEEEEEehHH-----HHHhhhhcCC--CEEEecCCCC
Confidence 3457999999999998866553 2 2456788888853 2222222122 3456788887
Q ss_pred ccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEE
Q 040129 109 RLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIII 188 (333)
Q Consensus 109 rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl 188 (333)
-+|+. |++++++.||+++. .+...+|+.=.+-|+|||++++
T Consensus 258 -~~p~~--D~v~~~~vlh~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l~i 298 (368)
T 3reo_A 258 -GVPKG--DAIFIKWICHDWSD------------------------------------EHCLKLLKNCYAALPDHGKVIV 298 (368)
T ss_dssp -CCCCC--SEEEEESCGGGBCH------------------------------------HHHHHHHHHHHHHSCTTCEEEE
T ss_pred -CCCCC--CEEEEechhhcCCH------------------------------------HHHHHHHHHHHHHcCCCCEEEE
Confidence 57865 99999999995322 2334556666688999999998
Q ss_pred EecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEe
Q 040129 189 TNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLT 262 (333)
Q Consensus 189 ~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~ 262 (333)
.=.-.++...... .. ......+ +.-|+. ...-..++.+|++++++++| |++.++...
T Consensus 299 ~e~~~~~~~~~~~--~~-~~~~~~d-~~~~~~------------~~~g~~rt~~e~~~ll~~AG-F~~v~~~~~ 355 (368)
T 3reo_A 299 AEYILPPSPDPSI--AT-KVVIHTD-ALMLAY------------NPGGKERTEKEFQALAMASG-FRGFKVASC 355 (368)
T ss_dssp EECCCCSSCCCCH--HH-HHHHHHH-HHHHHH------------SSBCCCCCHHHHHHHHHHTT-CCEEEEEEE
T ss_pred EEeccCCCCCCch--hh-hHHHhhh-HHHHhh------------cCCCccCCHHHHHHHHHHCC-CeeeEEEEe
Confidence 7443332211100 00 0011111 111111 01123478999999999999 988776544
No 31
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=98.40 E-value=8.9e-07 Score=77.22 Aligned_cols=158 Identities=14% Similarity=0.077 Sum_probs=86.4
Q ss_pred EEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCcccccccC
Q 040129 32 IRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKRLF 111 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~rlf 111 (333)
-+|+|+||++|..+..+... + .+|+.-|.-..-- ...+. ....+ +..+.+.+.. ++
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~------------~-------~~v~~~D~s~~~~-~~a~~-~~~~~--~~~~~~d~~~-~~ 103 (218)
T 3ou2_A 48 GDVLELASGTGYWTRHLSGL------------A-------DRVTALDGSAEMI-AEAGR-HGLDN--VEFRQQDLFD-WT 103 (218)
T ss_dssp SEEEEESCTTSHHHHHHHHH------------S-------SEEEEEESCHHHH-HHHGG-GCCTT--EEEEECCTTS-CC
T ss_pred CeEEEECCCCCHHHHHHHhc------------C-------CeEEEEeCCHHHH-HHHHh-cCCCC--eEEEeccccc-CC
Confidence 49999999999988776542 0 1244444321100 11111 00011 1122333333 37
Q ss_pred CCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEec
Q 040129 112 PEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITNP 191 (333)
Q Consensus 112 P~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~ 191 (333)
|++++|+++++.++||+.. .++..+|+.=.+-|+|||++++...
T Consensus 104 ~~~~~D~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 104 PDRQWDAVFFAHWLAHVPD------------------------------------DRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp CSSCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCceeEEEEechhhcCCH------------------------------------HHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 8999999999999999532 1234456666688999999999987
Q ss_pred CCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEe
Q 040129 192 SIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLT 262 (333)
Q Consensus 192 gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~ 262 (333)
+++... ....+......... ..+. .-..+.....+++.+|+.+++++.| |+|+..+..
T Consensus 148 ~~~~~~---------~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~ 205 (218)
T 3ou2_A 148 TDHERR---------LEQQDDSEPEVAVR-RTLQ--DGRSFRIVKVFRSPAELTERLTALG-WSCSVDEVH 205 (218)
T ss_dssp CCCC---------------------CEEE-EECT--TSCEEEEECCCCCHHHHHHHHHHTT-EEEEEEEEE
T ss_pred CCCccc---------cchhhhccccccee-eecC--CcchhhHhhcCCCHHHHHHHHHHCC-CEEEeeecc
Confidence 763221 11111100000000 0010 0001111233679999999999999 998877754
No 32
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=98.38 E-value=3.2e-06 Score=73.42 Aligned_cols=96 Identities=9% Similarity=0.065 Sum_probs=56.6
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEe
Q 040129 111 FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
+|++++|+++++.++||+.. ...+|+.=.+-|+|||++++..
T Consensus 107 ~~~~~~D~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~~~~ 148 (219)
T 3dlc_A 107 IEDNYADLIVSRGSVFFWED--------------------------------------VATAFREIYRILKSGGKTYIGG 148 (219)
T ss_dssp SCTTCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcccccEEEECchHhhccC--------------------------------------HHHHHHHHHHhCCCCCEEEEEe
Confidence 67889999999999999622 1224555557899999999975
Q ss_pred cCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEE
Q 040129 191 PSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGL 261 (333)
Q Consensus 191 ~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~ 261 (333)
.-... ...+.+...+.... .+. ...+.......+.+|++.++++.| |++..+..
T Consensus 149 ~~~~~----------~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~l~~aG-f~~v~~~~ 202 (219)
T 3dlc_A 149 GFGNK----------ELRDSISAEMIRKN-PDW-----KEFNRKNISQENVERFQNVLDEIG-ISSYEIIL 202 (219)
T ss_dssp CCSSH----------HHHHHHHHHHHHHC-TTH-----HHHHHHHSSHHHHHHHHHHHHHHT-CSSEEEEE
T ss_pred ccCcH----------HHHHHHHHHHHHhH-HHH-----HhhhhhccccCCHHHHHHHHHHcC-CCeEEEEe
Confidence 32211 12233333222220 000 000111122338899999999999 87655543
No 33
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=98.38 E-value=3.5e-06 Score=76.72 Aligned_cols=161 Identities=14% Similarity=0.190 Sum_probs=87.7
Q ss_pred CCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCcc--ccceeeccCccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQE--IHFFVAGVPGSF 106 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~--~~~f~~~vpgSF 106 (333)
+..-+|+|+||++|..+..+... .|..+|+--|.-.+-....=+.+... .+ +..+-+..
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~-----------------~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--~~~~~~d~ 96 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKN-----------------NPDAEITSIDISPESLEKARENTEKNGIKN--VKFLQANI 96 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHH-----------------CTTSEEEEEESCHHHHHHHHHHHHHTTCCS--EEEEECCG
T ss_pred CCCCeEEEecCCCCHHHHHHHHh-----------------CCCCEEEEEECCHHHHHHHHHHHHHcCCCC--cEEEEccc
Confidence 44679999999999888665532 12234555554322111111111000 01 11122333
Q ss_pred ccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceE
Q 040129 107 HKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMI 186 (333)
Q Consensus 107 y~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~m 186 (333)
..-.+|++++|+++++.++||+...+ .+|+.=.+-|+|||.+
T Consensus 97 ~~~~~~~~~fD~v~~~~~l~~~~~~~--------------------------------------~~l~~~~~~L~pgG~l 138 (276)
T 3mgg_A 97 FSLPFEDSSFDHIFVCFVLEHLQSPE--------------------------------------EALKSLKKVLKPGGTI 138 (276)
T ss_dssp GGCCSCTTCEEEEEEESCGGGCSCHH--------------------------------------HHHHHHHHHEEEEEEE
T ss_pred ccCCCCCCCeeEEEEechhhhcCCHH--------------------------------------HHHHHHHHHcCCCcEE
Confidence 44457889999999999999964311 2344444789999999
Q ss_pred EEEecCCCCCCCCccchhhHHHHHHHHHHHHH-HhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeC
Q 040129 187 IITNPSIPDGMPFSEIANGLMYNCMGTILYDM-VKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 187 vl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~m-v~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 263 (333)
++............ ......+... .+..+ ...| ....+.+++..+++++| |++..++...
T Consensus 139 ~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~-------------~~~~~~~~l~~~l~~aG-f~~v~~~~~~ 199 (276)
T 3mgg_A 139 TVIEGDHGSCYFHP--EGKKAIEAWN-CLIRVQAYMK-------------GNSLVGRQIYPLLQESG-FEKIRVEPRM 199 (276)
T ss_dssp EEEEECGGGCEEES--CCHHHHHHHH-HHHHHHHHTT-------------CCTTGGGGHHHHHHHTT-CEEEEEEEEE
T ss_pred EEEEcCCCCceECC--CcHHHHHHHH-HHHHHHHhcC-------------CCcchHHHHHHHHHHCC-CCeEEEeeEE
Confidence 99875432211000 0111112221 12222 1111 11235689999999999 9988888553
No 34
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=98.38 E-value=2.8e-06 Score=76.27 Aligned_cols=87 Identities=11% Similarity=0.050 Sum_probs=55.1
Q ss_pred CCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEecC
Q 040129 113 EKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITNPS 192 (333)
Q Consensus 113 ~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g 192 (333)
++++|+++|..++|++...+ .+|+.=.+-|+|||++++..+.
T Consensus 101 ~~~fD~V~~~~~~~~~~~~~--------------------------------------~~l~~~~r~LkpgG~l~~~~~~ 142 (256)
T 1nkv_A 101 NEKCDVAACVGATWIAGGFA--------------------------------------GAEELLAQSLKPGGIMLIGEPY 142 (256)
T ss_dssp SSCEEEEEEESCGGGTSSSH--------------------------------------HHHHHHTTSEEEEEEEEEEEEE
T ss_pred CCCCCEEEECCChHhcCCHH--------------------------------------HHHHHHHHHcCCCeEEEEecCc
Confidence 68899999999999965311 1244445789999999998654
Q ss_pred CCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEe
Q 040129 193 IPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLT 262 (333)
Q Consensus 193 r~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~ 262 (333)
...... . ..+.. ... . .....+++.+++...+++.| |++..++..
T Consensus 143 ~~~~~~-~--------~~~~~--------~~~------~-~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~ 187 (256)
T 1nkv_A 143 WRQLPA-T--------EEIAQ--------ACG------V-SSTSDFLTLPGLVGAFDDLG-YDVVEMVLA 187 (256)
T ss_dssp ETTCCS-S--------HHHHH--------TTT------C-SCGGGSCCHHHHHHHHHTTT-BCCCEEEEC
T ss_pred ccCCCC-h--------HHHHH--------HHh------c-ccccccCCHHHHHHHHHHCC-CeeEEEEeC
Confidence 322211 0 01111 110 0 11125689999999999999 987665543
No 35
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=98.38 E-value=1.8e-05 Score=72.29 Aligned_cols=102 Identities=18% Similarity=0.170 Sum_probs=63.3
Q ss_pred CCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEec
Q 040129 112 PEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITNP 191 (333)
Q Consensus 112 P~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~ 191 (333)
|++++|+++++.++||+-.. ..|...+|+.=++-|+|||++++..+
T Consensus 130 ~~~~fD~v~~~~~l~~~~~~----------------------------------~~~~~~~l~~~~~~LkpgG~l~~~~~ 175 (298)
T 1ri5_A 130 LGKEFDVISSQFSFHYAFST----------------------------------SESLDIAQRNIARHLRPGGYFIMTVP 175 (298)
T ss_dssp CSSCEEEEEEESCGGGGGSS----------------------------------HHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCcCEEEECchhhhhcCC----------------------------------HHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 67899999999999995210 13555677777788999999999885
Q ss_pred CCCCCCCCccchhhHHHHHHHHHHHHHH-hcc----------CCCH---hh-----hhc-CCcCcccCCHHHHHHHHHhC
Q 040129 192 SIPDGMPFSEIANGLMYNCMGTILYDMV-KVG----------LLSE---AQ-----VDS-FNLPIYACPPGEFGAVVERN 251 (333)
Q Consensus 192 gr~~~~~~~~~~~~~~~~~l~~~l~~mv-~eG----------~i~~---~~-----~d~-fn~P~y~ps~~E~~~~ie~~ 251 (333)
... .++..+. ... ... .++. .+ .+. -..|.++.+.+|++.++++.
T Consensus 176 ~~~-----------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~ll~~a 240 (298)
T 1ri5_A 176 SRD-----------VILERYK----QGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRL 240 (298)
T ss_dssp CHH-----------HHHHHHH----HTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCSSEEEECCCHHHHHHHHHTT
T ss_pred CHH-----------HHHHHHc----cCccCCeeEEEEeCccccccccccceEEEEEchhhcCCcccccCHHHHHHHHHHc
Confidence 421 1111111 000 000 0000 00 000 02345678999999999999
Q ss_pred CcEEEeEEEEeC
Q 040129 252 GNFRIEVMGLTN 263 (333)
Q Consensus 252 G~F~I~~le~~~ 263 (333)
| |++...+.+.
T Consensus 241 G-f~~v~~~~~~ 251 (298)
T 1ri5_A 241 G-LSLVERKGFI 251 (298)
T ss_dssp T-EEEEEEEEHH
T ss_pred C-CEEEEecCHH
Confidence 9 9998887663
No 36
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=98.38 E-value=1.8e-06 Score=79.54 Aligned_cols=88 Identities=15% Similarity=0.199 Sum_probs=62.8
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEe
Q 040129 111 FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
+|++++|+|+|+.+|||++.- + .|+..+|+.=++-|+|||+|++..
T Consensus 170 ~~~~~fD~V~~~~~l~~~~~~---~-------------------------------~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 170 PAPLPADALVSAFCLEAVSPD---L-------------------------------ASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp SSCSSEEEEEEESCHHHHCSS---H-------------------------------HHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cCCCCCCEEEehhhhhhhcCC---H-------------------------------HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 678899999999999996531 1 345566777779999999999974
Q ss_pred cCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeC
Q 040129 191 PSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 191 ~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 263 (333)
.-... ... .| .-..+.++.+.+|+++++++.| |++..++.+.
T Consensus 216 ~~~~~-------~~~---------------~~--------~~~~~~~~~~~~~l~~~l~~aG-f~~~~~~~~~ 257 (289)
T 2g72_A 216 ALEES-------WYL---------------AG--------EARLTVVPVSEEEVREALVRSG-YKVRDLRTYI 257 (289)
T ss_dssp EESCC-------EEE---------------ET--------TEEEECCCCCHHHHHHHHHHTT-EEEEEEEEEE
T ss_pred ecCcc-------eEE---------------cC--------CeeeeeccCCHHHHHHHHHHcC-CeEEEeeEee
Confidence 21110 000 01 0123566789999999999999 9998888664
No 37
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=98.37 E-value=8.8e-06 Score=76.46 Aligned_cols=178 Identities=13% Similarity=0.142 Sum_probs=97.7
Q ss_pred CcEEEEeecCCCCcccHHHH-------------HHHHHHHHHHhhhcCCCC--CCCcceEEecCCCCCchHHHhhcCCcc
Q 040129 30 NTIRLADCGCAVGPNTFNAM-------------QDLIEIVKHKYKSQCPNS--QNPEFHVSFNDQSSNDFNTLFTSLPQE 94 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~-------------~~ii~~i~~~~~~~~~~~--~~~~~~v~~nDlP~NDFn~lF~~l~~~ 94 (333)
..-+|+|+||++|..+...+ ...|+..++++...+... ....+++...|.-++.|..- |
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~---l--- 121 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSS---V--- 121 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHH---H---
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhh---h---
Confidence 35799999999998876544 445666666665432100 00123444556555444321 0
Q ss_pred ccceeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHH
Q 040129 95 IHFFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLN 174 (333)
Q Consensus 95 ~~~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~ 174 (333)
...+|++++|+|.|..++||+-..+ |...+|+
T Consensus 122 -------------~~~~~~~~FD~V~~~~~lhy~~~~~-----------------------------------~~~~~l~ 153 (302)
T 2vdw_A 122 -------------REVFYFGKFNIIDWQFAIHYSFHPR-----------------------------------HYATVMN 153 (302)
T ss_dssp -------------HTTCCSSCEEEEEEESCGGGTCSTT-----------------------------------THHHHHH
T ss_pred -------------hccccCCCeeEEEECchHHHhCCHH-----------------------------------HHHHHHH
Confidence 0125778999999999999954322 1235577
Q ss_pred hhhhhhccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhh-------hhcCCcCcccCCHHHHHHH
Q 040129 175 NRAKEIVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQ-------VDSFNLPIYACPPGEFGAV 247 (333)
Q Consensus 175 ~Ra~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~-------~d~fn~P~y~ps~~E~~~~ 247 (333)
.=++-|+|||+|++..+.+..-........-.++...- .+.....-+-++.+. -.....|.|+-+.+|+++.
T Consensus 154 ~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~el~~l 232 (302)
T 2vdw_A 154 NLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLP-SSENYMSVEKIADDRIVVYNPSTMSTPMTEYIIKKNDIVRV 232 (302)
T ss_dssp HHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSC-TTTSEEEECEEETTEEEEBCTTTBSSCEEEECCCHHHHHHH
T ss_pred HHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccc-cccceeeeccccccccceeeccccCCCceeeeeEHHHHHHH
Confidence 77799999999999886532110000000000000000 000000000000000 0123566788889999999
Q ss_pred HHhCCcEEEeEEEEeC
Q 040129 248 VERNGNFRIEVMGLTN 263 (333)
Q Consensus 248 ie~~G~F~I~~le~~~ 263 (333)
+++.| |++.....+.
T Consensus 233 ~~~~G-l~lv~~~~f~ 247 (302)
T 2vdw_A 233 FNEYG-FVLVDNVDFA 247 (302)
T ss_dssp HHHTT-EEEEEEEEHH
T ss_pred HHHCC-CEEEEecChH
Confidence 99999 9988877664
No 38
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=98.37 E-value=1.4e-05 Score=76.76 Aligned_cols=152 Identities=18% Similarity=0.152 Sum_probs=93.5
Q ss_pred CcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCcccccc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKR 109 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~r 109 (333)
+.-+|+|+||++|..+..+.+ + .|..++..-|+|. ....-....+ +.-+.|+|+.
T Consensus 201 ~~~~vlDvG~G~G~~~~~l~~--------~---------~p~~~~~~~D~~~-----~~~~a~~~~~--v~~~~~D~~~- 255 (364)
T 3p9c_A 201 GLGTLVDVGGGVGATVAAIAA--------H---------YPTIKGVNFDLPH-----VISEAPQFPG--VTHVGGDMFK- 255 (364)
T ss_dssp TCSEEEEETCTTSHHHHHHHH--------H---------CTTCEEEEEECHH-----HHTTCCCCTT--EEEEECCTTT-
T ss_pred CCCEEEEeCCCCCHHHHHHHH--------H---------CCCCeEEEecCHH-----HHHhhhhcCC--eEEEeCCcCC-
Confidence 457999999999988766553 2 2456788888853 2222222122 4457788888
Q ss_pred cCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEE
Q 040129 110 LFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIIT 189 (333)
Q Consensus 110 lfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~ 189 (333)
-+|.. |++++++.||.++. .|...+|+.=++-|+|||++++.
T Consensus 256 ~~p~~--D~v~~~~vlh~~~d------------------------------------~~~~~~L~~~~~~L~pgG~l~i~ 297 (364)
T 3p9c_A 256 EVPSG--DTILMKWILHDWSD------------------------------------QHCATLLKNCYDALPAHGKVVLV 297 (364)
T ss_dssp CCCCC--SEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHSCTTCEEEEE
T ss_pred CCCCC--CEEEehHHhccCCH------------------------------------HHHHHHHHHHHHHcCCCCEEEEE
Confidence 67865 99999999985321 23445566667889999999987
Q ss_pred ecCCCCCCCCccchhhHHHHH-HHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEe
Q 040129 190 NPSIPDGMPFSEIANGLMYNC-MGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLT 262 (333)
Q Consensus 190 ~~gr~~~~~~~~~~~~~~~~~-l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~ 262 (333)
=...++..... ..+.. ...-+.-|+. ...-..+|.+|++++++++| |++.++...
T Consensus 298 e~~~~~~~~~~-----~~~~~~~~~d~~m~~~------------~~~g~~rt~~e~~~ll~~AG-F~~v~~~~~ 353 (364)
T 3p9c_A 298 QCILPVNPEAN-----PSSQGVFHVDMIMLAH------------NPGGRERYEREFQALARGAG-FTGVKSTYI 353 (364)
T ss_dssp ECCBCSSCCSS-----HHHHHHHHHHHHHHHH------------CSSCCCCBHHHHHHHHHHTT-CCEEEEEEE
T ss_pred EeccCCCCCcc-----hhhhhHHHhHHHHHhc------------ccCCccCCHHHHHHHHHHCC-CceEEEEEc
Confidence 44333321110 11110 1111111111 11123468999999999999 988776644
No 39
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=98.36 E-value=4.3e-06 Score=79.53 Aligned_cols=151 Identities=17% Similarity=0.194 Sum_probs=93.8
Q ss_pred CCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhc-CCccc-cceeeccCccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTS-LPQEI-HFFVAGVPGSF 106 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~-l~~~~-~~f~~~vpgSF 106 (333)
++.-+|+|+||++|..+..+.. + .|..+++.-|+|.. +-+. +.... .--+.-+.|+|
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~~--------~---------~p~~~~~~~D~~~~----~~~~~~~~~~~~~~v~~~~~d~ 241 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVLR--------E---------HPGLQGVLLDRAEV----VARHRLDAPDVAGRWKVVEGDF 241 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHHH--------H---------CTTEEEEEEECHHH----HTTCCCCCGGGTTSEEEEECCT
T ss_pred cCCceEEEECCccCHHHHHHHH--------H---------CCCCEEEEecCHHH----hhcccccccCCCCCeEEEecCC
Confidence 4468999999999988866553 2 24567888888532 1111 11110 11245567888
Q ss_pred ccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceE
Q 040129 107 HKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMI 186 (333)
Q Consensus 107 y~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~m 186 (333)
+ .-+| +.|+++++.+||+++. .+...+|+.=.+-|+|||++
T Consensus 242 ~-~~~p--~~D~v~~~~vlh~~~d------------------------------------~~~~~~L~~~~~~LkpgG~l 282 (348)
T 3lst_A 242 L-REVP--HADVHVLKRILHNWGD------------------------------------EDSVRILTNCRRVMPAHGRV 282 (348)
T ss_dssp T-TCCC--CCSEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHTCCTTCEE
T ss_pred C-CCCC--CCcEEEEehhccCCCH------------------------------------HHHHHHHHHHHHhcCCCCEE
Confidence 8 5567 9999999999996322 23345566667899999999
Q ss_pred EEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEE
Q 040129 187 IITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGL 261 (333)
Q Consensus 187 vl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~ 261 (333)
++.-...++.... .....++. .-|+.. .-..++.+|++++++++| |++.++..
T Consensus 283 ~i~e~~~~~~~~~---~~~~~~d~-----~~~~~~-------------~~~~~t~~e~~~ll~~aG-f~~~~~~~ 335 (348)
T 3lst_A 283 LVIDAVVPEGNDA---HQSKEMDF-----MMLAAR-------------TGQERTAAELEPLFTAAG-LRLDRVVG 335 (348)
T ss_dssp EEEECCBCSSSSC---CHHHHHHH-----HHHHTT-------------SCCCCBHHHHHHHHHHTT-EEEEEEEE
T ss_pred EEEEeccCCCCCc---chhhhcCh-----hhhhcC-------------CCcCCCHHHHHHHHHHCC-CceEEEEE
Confidence 9875444332110 11111111 111111 123578999999999999 99877765
No 40
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=98.35 E-value=1.2e-05 Score=71.93 Aligned_cols=93 Identities=16% Similarity=0.283 Sum_probs=60.0
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEe
Q 040129 111 FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
+|++++|+++|+.++||+... ..+|+.=.+-|+|||++++..
T Consensus 83 ~~~~~fD~v~~~~~l~~~~~~--------------------------------------~~~l~~~~~~LkpgG~l~~~~ 124 (239)
T 1xxl_A 83 FPDDSFDIITCRYAAHHFSDV--------------------------------------RKAVREVARVLKQDGRFLLVD 124 (239)
T ss_dssp SCTTCEEEEEEESCGGGCSCH--------------------------------------HHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCcEEEEEECCchhhccCH--------------------------------------HHHHHHHHHHcCCCcEEEEEE
Confidence 678899999999999996421 123444457899999999986
Q ss_pred cCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeC
Q 040129 191 PSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 191 ~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 263 (333)
...++. ...+.+.+.+..+ .++ ......+.+|+..+++++| |++..++.+.
T Consensus 125 ~~~~~~---------~~~~~~~~~~~~~-~~~-----------~~~~~~~~~~~~~ll~~aG-f~~~~~~~~~ 175 (239)
T 1xxl_A 125 HYAPED---------PVLDEFVNHLNRL-RDP-----------SHVRESSLSEWQAMFSANQ-LAYQDIQKWN 175 (239)
T ss_dssp ECBCSS---------HHHHHHHHHHHHH-HCT-----------TCCCCCBHHHHHHHHHHTT-EEEEEEEEEE
T ss_pred cCCCCC---------hhHHHHHHHHHHh-ccc-----------cccCCCCHHHHHHHHHHCC-CcEEEEEeec
Confidence 554321 1122222222211 111 1123458999999999999 9988887664
No 41
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=98.34 E-value=6.3e-06 Score=74.88 Aligned_cols=192 Identities=16% Similarity=0.111 Sum_probs=104.7
Q ss_pred CcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCcccccc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKR 109 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~r 109 (333)
..-+|+|+||++|..+..+.+ +..+|+-.|+.. ..........+ +..+-+.+..-
T Consensus 34 ~~~~vLDiGcG~G~~~~~l~~-------------------~~~~v~gvD~s~----~~~~~a~~~~~--~~~~~~d~~~~ 88 (261)
T 3ege_A 34 KGSVIADIGAGTGGYSVALAN-------------------QGLFVYAVEPSI----VMRQQAVVHPQ--VEWFTGYAENL 88 (261)
T ss_dssp TTCEEEEETCTTSHHHHHHHT-------------------TTCEEEEECSCH----HHHHSSCCCTT--EEEECCCTTSC
T ss_pred CCCEEEEEcCcccHHHHHHHh-------------------CCCEEEEEeCCH----HHHHHHHhccC--CEEEECchhhC
Confidence 457999999999998866542 124566666543 11111100001 12223444443
Q ss_pred cCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEE
Q 040129 110 LFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIIT 189 (333)
Q Consensus 110 lfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~ 189 (333)
-+|++++|+++|..++||+.. +..+|+.=.+-|+ ||++++.
T Consensus 89 ~~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~Lk-gG~~~~~ 129 (261)
T 3ege_A 89 ALPDKSVDGVISILAIHHFSH--------------------------------------LEKSFQEMQRIIR-DGTIVLL 129 (261)
T ss_dssp CSCTTCBSEEEEESCGGGCSS--------------------------------------HHHHHHHHHHHBC-SSCEEEE
T ss_pred CCCCCCEeEEEEcchHhhccC--------------------------------------HHHHHHHHHHHhC-CcEEEEE
Confidence 478899999999999999622 2233444557899 9988887
Q ss_pred ecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeC-CCCCC
Q 040129 190 NPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTN-PSPWL 268 (333)
Q Consensus 190 ~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~-p~~~~ 268 (333)
-...+..... ... ..+.... .. ...++++.+++. .+++.| |++...+.+. |....
T Consensus 130 ~~~~~~~~~~---~~~---~~~~~~~----~~------------~~~~~~~~~~~~-~l~~aG-F~~v~~~~~~~p~~~~ 185 (261)
T 3ege_A 130 TFDIRLAQRI---WLY---DYFPFLW----ED------------ALRFLPLDEQIN-LLQENT-KRRVEAIPFLLPHDLS 185 (261)
T ss_dssp EECGGGCCCC---GGG---GTCHHHH----HH------------HHTSCCHHHHHH-HHHHHH-CSEEEEEECCEETTCS
T ss_pred EcCCchhHHH---HHH---HHHHHHh----hh------------hhhhCCCHHHHH-HHHHcC-CCceeEEEecCCCcCc
Confidence 6654322110 111 1111110 00 113467789999 999999 9888888775 33211
Q ss_pred ---cCCC--ChhHHH-HHHHHHhhhhhhhhcChHHHHHHHHHHHHHHHH
Q 040129 269 ---KGRI--NMPEYI-KHVRAATESMFNKHFSYEVTEEMFRQLLERLEE 311 (333)
Q Consensus 269 ---~~~~--~~~~~a-~~iRa~~e~~l~~hfgeei~delf~r~~~~l~~ 311 (333)
.+.. ....+. ...+...+.+ . .+.++.++++.++..+.++.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~e~~~~~~~~~~~l~~ 232 (261)
T 3ege_A 186 DLFAAAAWRRPELYLKAEVRAGISSF-A-LANQDLVEKGLELLTADLNN 232 (261)
T ss_dssp BCCTTTTTTCGGGGGSHHHHHTSHHH-H-HSCHHHHHHHHHHHHHHHHT
T ss_pred chhhHHhccCchhhcCcchhccccce-e-ecCHHHHHHHHHHHHHHHhc
Confidence 1110 011111 1222222222 2 25677777777777776654
No 42
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=98.31 E-value=3.5e-05 Score=71.85 Aligned_cols=142 Identities=8% Similarity=0.031 Sum_probs=87.3
Q ss_pred CCcEEEEeecCCCCcccHHHHHH-------------HHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQD-------------LIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEI 95 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~-------------ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~ 95 (333)
...-+|+|+||++|..++.+... .++..+++....+. ...+++...|.
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~---~~~v~~~~~d~---------------- 176 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRI---DDHVRSRVCNM---------------- 176 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC---TTTEEEEECCT----------------
T ss_pred CCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC---CCceEEEECCh----------------
Confidence 34579999999999999877643 22333333222110 11234444433
Q ss_pred cceeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHh
Q 040129 96 HFFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNN 175 (333)
Q Consensus 96 ~~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~ 175 (333)
..--+|++++|+++++.++||+. +. .+|+.
T Consensus 177 -----------~~~~~~~~~fD~V~~~~~l~~~~--~~-------------------------------------~~l~~ 206 (312)
T 3vc1_A 177 -----------LDTPFDKGAVTASWNNESTMYVD--LH-------------------------------------DLFSE 206 (312)
T ss_dssp -----------TSCCCCTTCEEEEEEESCGGGSC--HH-------------------------------------HHHHH
T ss_pred -----------hcCCCCCCCEeEEEECCchhhCC--HH-------------------------------------HHHHH
Confidence 22226788999999999999973 21 12444
Q ss_pred hhhhhccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEE
Q 040129 176 RAKEIVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFR 255 (333)
Q Consensus 176 Ra~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~ 255 (333)
=.+-|+|||++++......+.... ....++.+.. . ..| ..++.+|+..++++.| |+
T Consensus 207 ~~~~LkpgG~l~~~~~~~~~~~~~----~~~~~~~~~~--------~----------~~~-~~~s~~~~~~~l~~aG-f~ 262 (312)
T 3vc1_A 207 HSRFLKVGGRYVTITGCWNPRYGQ----PSKWVSQINA--------H----------FEC-NIHSRREYLRAMADNR-LV 262 (312)
T ss_dssp HHHHEEEEEEEEEEEEEECTTTCS----CCHHHHHHHH--------H----------HTC-CCCBHHHHHHHHHTTT-EE
T ss_pred HHHHcCCCcEEEEEEccccccccc----hhHHHHHHHh--------h----------hcC-CCCCHHHHHHHHHHCC-CE
Confidence 457899999999987655442211 1112222221 1 011 4788999999999999 99
Q ss_pred EeEEEEeC
Q 040129 256 IEVMGLTN 263 (333)
Q Consensus 256 I~~le~~~ 263 (333)
+..++.+.
T Consensus 263 ~~~~~~~~ 270 (312)
T 3vc1_A 263 PHTIVDLT 270 (312)
T ss_dssp EEEEEECH
T ss_pred EEEEEeCC
Confidence 98888764
No 43
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=98.30 E-value=3.5e-06 Score=74.58 Aligned_cols=151 Identities=11% Similarity=0.118 Sum_probs=84.6
Q ss_pred EEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCcccccccC
Q 040129 32 IRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKRLF 111 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~rlf 111 (333)
-+|+|+||++|..+..+... -+ +|+-.|+-..--...=+..+. + +..+-+.+. .++
T Consensus 44 ~~vLDiGcG~G~~~~~l~~~-----------------~~--~v~gvD~s~~~~~~a~~~~~~--~--v~~~~~d~~-~~~ 99 (250)
T 2p7i_A 44 GNLLELGSFKGDFTSRLQEH-----------------FN--DITCVEASEEAISHAQGRLKD--G--ITYIHSRFE-DAQ 99 (250)
T ss_dssp SCEEEESCTTSHHHHHHTTT-----------------CS--CEEEEESCHHHHHHHHHHSCS--C--EEEEESCGG-GCC
T ss_pred CcEEEECCCCCHHHHHHHHh-----------------CC--cEEEEeCCHHHHHHHHHhhhC--C--eEEEEccHH-HcC
Confidence 47999999999887654310 11 344445432211111111211 1 111222332 236
Q ss_pred CCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhh-hhhccCceEEEEe
Q 040129 112 PEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRA-KEIVPGGMIIITN 190 (333)
Q Consensus 112 P~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra-~EL~~GG~mvl~~ 190 (333)
|++++|+++++.+||++.. ...+|+.=+ +-|+|||++++..
T Consensus 100 ~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~~LkpgG~l~i~~ 141 (250)
T 2p7i_A 100 LPRRYDNIVLTHVLEHIDD--------------------------------------PVALLKRINDDWLAEGGRLFLVC 141 (250)
T ss_dssp CSSCEEEEEEESCGGGCSS--------------------------------------HHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cCCcccEEEEhhHHHhhcC--------------------------------------HHHHHHHHHHHhcCCCCEEEEEc
Confidence 8899999999999999632 113355555 7899999999988
Q ss_pred cCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhh----hhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEe
Q 040129 191 PSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQ----VDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLT 262 (333)
Q Consensus 191 ~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~----~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~ 262 (333)
+.... ...... .+ .|...... .+....-....+.++++.++++.| |++...+.+
T Consensus 142 ~~~~~-----------~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~ 199 (250)
T 2p7i_A 142 PNANA-----------VSRQIA-VK-----MGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAG-LQVTYRSGI 199 (250)
T ss_dssp ECTTC-----------HHHHHH-HH-----TTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTT-CEEEEEEEE
T ss_pred CChHH-----------HHHHHH-HH-----cCccccchhcccccccccccccCCHHHHHHHHHHCC-CeEEEEeee
Confidence 65432 111111 11 13322110 000111123568999999999999 999888854
No 44
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=98.30 E-value=1.4e-05 Score=73.26 Aligned_cols=79 Identities=11% Similarity=0.098 Sum_probs=54.0
Q ss_pred CceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEecCC
Q 040129 114 KFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITNPSI 193 (333)
Q Consensus 114 ~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~gr 193 (333)
+++|+|++..+||||. .. +...+++.=++-|+|||++++.....
T Consensus 151 ~~FD~V~~~~~l~~l~---~~---------------------------------~~~~~l~~~~~~LkpGG~l~l~~~~~ 194 (252)
T 2gb4_A 151 GKFDRIWDRGALVAIN---PG---------------------------------DHDRYADIILSLLRKEFQYLVAVLSY 194 (252)
T ss_dssp CCEEEEEESSSTTTSC---GG---------------------------------GHHHHHHHHHHTEEEEEEEEEEEEEC
T ss_pred CCEEEEEEhhhhhhCC---HH---------------------------------HHHHHHHHHHHHcCCCeEEEEEEEec
Confidence 7899999999999973 21 22334555568899999997543221
Q ss_pred CCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeCC
Q 040129 194 PDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTNP 264 (333)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p 264 (333)
+. + ...-|.|..+.+|++..++. + |+|+.++.+++
T Consensus 195 ~~--------------------------~--------~~~g~~~~~~~~el~~~l~~-~-f~v~~~~~~~~ 229 (252)
T 2gb4_A 195 DP--------------------------T--------KHAGPPFYVPSAELKRLFGT-K-CSMQCLEEVDA 229 (252)
T ss_dssp CT--------------------------T--------SCCCSSCCCCHHHHHHHHTT-T-EEEEEEEEEEC
T ss_pred CC--------------------------c--------cCCCCCCCCCHHHHHHHhhC-C-eEEEEEecccc
Confidence 10 0 01124455789999999987 5 99999997763
No 45
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=98.30 E-value=4.4e-06 Score=73.18 Aligned_cols=144 Identities=16% Similarity=0.171 Sum_probs=86.9
Q ss_pred CcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCcc--ccceeeccCcccc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQE--IHFFVAGVPGSFH 107 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~--~~~f~~~vpgSFy 107 (333)
..-+|+|+||++|..+..+.... .|..+|+.-|.-..--...=+.+... .+ +..+-+.+.
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~----------------~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--~~~~~~d~~ 98 (219)
T 3dh0_A 37 EGMTVLDVGTGAGFYLPYLSKMV----------------GEKGKVYAIDVQEEMVNYAWEKVNKLGLKN--VEVLKSEEN 98 (219)
T ss_dssp TTCEEEESSCTTCTTHHHHHHHH----------------TTTCEEEEEESCHHHHHHHHHHHHHHTCTT--EEEEECBTT
T ss_pred CCCEEEEEecCCCHHHHHHHHHh----------------CCCcEEEEEECCHHHHHHHHHHHHHcCCCc--EEEEecccc
Confidence 35699999999999987765421 12345555554322111111111000 01 111223333
Q ss_pred cccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEE
Q 040129 108 KRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMII 187 (333)
Q Consensus 108 ~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mv 187 (333)
.--+|++++|+++++.++||+.. ...+|+.=.+-|+|||+++
T Consensus 99 ~~~~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~LkpgG~l~ 140 (219)
T 3dh0_A 99 KIPLPDNTVDFIFMAFTFHELSE--------------------------------------PLKFLEELKRVAKPFAYLA 140 (219)
T ss_dssp BCSSCSSCEEEEEEESCGGGCSS--------------------------------------HHHHHHHHHHHEEEEEEEE
T ss_pred cCCCCCCCeeEEEeehhhhhcCC--------------------------------------HHHHHHHHHHHhCCCeEEE
Confidence 33478899999999999999632 1223444457899999999
Q ss_pred EEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeC
Q 040129 188 ITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 188 l~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 263 (333)
+.......... + .......+.+|++..+++.| |++.....+.
T Consensus 141 i~~~~~~~~~~-----------------------~----------~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~ 182 (219)
T 3dh0_A 141 IIDWKKEERDK-----------------------G----------PPPEEVYSEWEVGLILEDAG-IRVGRVVEVG 182 (219)
T ss_dssp EEEECSSCCSS-----------------------S----------CCGGGSCCHHHHHHHHHHTT-CEEEEEEEET
T ss_pred EEEeccccccc-----------------------C----------CchhcccCHHHHHHHHHHCC-CEEEEEEeeC
Confidence 98655443211 0 01123358999999999999 9988877654
No 46
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=98.29 E-value=3e-06 Score=74.04 Aligned_cols=140 Identities=16% Similarity=0.126 Sum_probs=87.4
Q ss_pred cEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCccccccc
Q 040129 31 TIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKRL 110 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~rl 110 (333)
.-+|+|+||++|..+..+.+. ..+|+.-|.-..-....-+.+ + +..+-+.+.. +
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~-------------------~~~v~~vD~s~~~~~~a~~~~----~--~~~~~~d~~~-~ 97 (211)
T 3e23_A 44 GAKILELGCGAGYQAEAMLAA-------------------GFDVDATDGSPELAAEASRRL----G--RPVRTMLFHQ-L 97 (211)
T ss_dssp TCEEEESSCTTSHHHHHHHHT-------------------TCEEEEEESCHHHHHHHHHHH----T--SCCEECCGGG-C
T ss_pred CCcEEEECCCCCHHHHHHHHc-------------------CCeEEEECCCHHHHHHHHHhc----C--CceEEeeecc-C
Confidence 469999999999988766532 123555554321111111111 0 1111233332 2
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEe
Q 040129 111 FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
-+++++|+++++.++|++.. .|+..+|+.=.+-|+|||++++.+
T Consensus 98 ~~~~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~~~~ 141 (211)
T 3e23_A 98 DAIDAYDAVWAHACLLHVPR------------------------------------DELADVLKLIWRALKPGGLFYASY 141 (211)
T ss_dssp CCCSCEEEEEECSCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCcEEEEEecCchhhcCH------------------------------------HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 27899999999999999541 345556777778899999999997
Q ss_pred cCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeC
Q 040129 191 PSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 191 ~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 263 (333)
....... .+.+...+.+.+.+|++.++++.|.|++..++...
T Consensus 142 ~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~ 183 (211)
T 3e23_A 142 KSGEGEG-------------------------------RDKLARYYNYPSEEWLRARYAEAGTWASVAVESSE 183 (211)
T ss_dssp ECCSSCE-------------------------------ECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEE
T ss_pred cCCCccc-------------------------------ccccchhccCCCHHHHHHHHHhCCCcEEEEEEecc
Confidence 5433211 01122344678999999999999878877777553
No 47
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=98.29 E-value=1.1e-05 Score=71.47 Aligned_cols=147 Identities=16% Similarity=0.180 Sum_probs=86.5
Q ss_pred cEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCccccccc
Q 040129 31 TIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKRL 110 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~rl 110 (333)
.-+|+|+||++|..+..+... ..+|+.-|.-.. .-...+......++ ..+-+.+..--
T Consensus 54 ~~~vLDiG~G~G~~~~~l~~~-------------------~~~v~~vD~s~~-~~~~a~~~~~~~~~--~~~~~d~~~~~ 111 (242)
T 3l8d_A 54 EAEVLDVGCGDGYGTYKLSRT-------------------GYKAVGVDISEV-MIQKGKERGEGPDL--SFIKGDLSSLP 111 (242)
T ss_dssp TCEEEEETCTTSHHHHHHHHT-------------------TCEEEEEESCHH-HHHHHHTTTCBTTE--EEEECBTTBCS
T ss_pred CCeEEEEcCCCCHHHHHHHHc-------------------CCeEEEEECCHH-HHHHHHhhcccCCc--eEEEcchhcCC
Confidence 469999999999988766532 123444444211 11111111111111 11223333334
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEe
Q 040129 111 FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
+|++++|+++++.++||+.. | ..+|+.=.+-|+|||++++..
T Consensus 112 ~~~~~fD~v~~~~~l~~~~~-~-------------------------------------~~~l~~~~~~L~pgG~l~i~~ 153 (242)
T 3l8d_A 112 FENEQFEAIMAINSLEWTEE-P-------------------------------------LRALNEIKRVLKSDGYACIAI 153 (242)
T ss_dssp SCTTCEEEEEEESCTTSSSC-H-------------------------------------HHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCccEEEEcChHhhccC-H-------------------------------------HHHHHHHHHHhCCCeEEEEEE
Confidence 78899999999999999622 1 123455557899999999998
Q ss_pred cCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEe
Q 040129 191 PSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLT 262 (333)
Q Consensus 191 ~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~ 262 (333)
.+....... . .+ . ............+.+|++.+++++| |++...+.+
T Consensus 154 ~~~~~~~~~-----~-~~-------~-----------~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~ 200 (242)
T 3l8d_A 154 LGPTAKPRE-----N-SY-------P-----------RLYGKDVVCNTMMPWEFEQLVKEQG-FKVVDGIGV 200 (242)
T ss_dssp ECTTCGGGG-----G-GG-------G-----------GGGTCCCSSCCCCHHHHHHHHHHTT-EEEEEEEEE
T ss_pred cCCcchhhh-----h-hh-------h-----------hhccccccccCCCHHHHHHHHHHcC-CEEEEeecc
Confidence 765432110 0 00 0 0111233556678999999999999 999888743
No 48
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=98.27 E-value=2.8e-06 Score=74.25 Aligned_cols=98 Identities=16% Similarity=0.157 Sum_probs=60.4
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEe
Q 040129 111 FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
.+.+++|+++++.++|+ .. ...+|+.=.+-|+|||++++..
T Consensus 112 ~~~~~fD~v~~~~~l~~-~~--------------------------------------~~~~l~~~~~~L~pgG~l~~~~ 152 (227)
T 3e8s_A 112 PVGKDYDLICANFALLH-QD--------------------------------------IIELLSAMRTLLVPGGALVIQT 152 (227)
T ss_dssp CCCCCEEEEEEESCCCS-SC--------------------------------------CHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccCCCccEEEECchhhh-hh--------------------------------------HHHHHHHHHHHhCCCeEEEEEe
Confidence 45556999999999992 11 1123555558899999999998
Q ss_pred cCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEe
Q 040129 191 PSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLT 262 (333)
Q Consensus 191 ~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~ 262 (333)
......... . +...|....-.|.. -.-...++++++.+|+..+++++| |++..++..
T Consensus 153 ~~~~~~~~~-~---------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~ 209 (227)
T 3e8s_A 153 LHPWSVADG-D---------YQDGWREESFAGFA----GDWQPMPWYFRTLASWLNALDMAG-LRLVSLQEP 209 (227)
T ss_dssp CCTTTTCTT-C---------CSCEEEEECCTTSS----SCCCCEEEEECCHHHHHHHHHHTT-EEEEEEECC
T ss_pred cCccccCcc-c---------cccccchhhhhccc----cCcccceEEEecHHHHHHHHHHcC-CeEEEEecC
Confidence 765432210 0 00000000000100 001246778899999999999999 999888764
No 49
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=98.27 E-value=6.1e-06 Score=78.16 Aligned_cols=153 Identities=14% Similarity=0.141 Sum_probs=92.4
Q ss_pred cEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhc-CCccc-cceeeccCccccc
Q 040129 31 TIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTS-LPQEI-HFFVAGVPGSFHK 108 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~-l~~~~-~~f~~~vpgSFy~ 108 (333)
.-+|+|+||++|..+..+.. + .|..++..-|+|. .-...+. +.... .-=+..+.|.|..
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~--------~---------~p~~~~~~~D~~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~ 240 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLR--------R---------HPQLTGQIWDLPT--TRDAARKTIHAHDLGGRVEFFEKNLLD 240 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHH--------H---------CTTCEEEEEECGG--GHHHHHHHHHHTTCGGGEEEEECCTTC
T ss_pred CCEEEEeCCCcCHHHHHHHH--------h---------CCCCeEEEEECHH--HHHHHHHHHHhcCCCCceEEEeCCccc
Confidence 68999999999998766552 2 2446778889864 2222221 11100 0013446677775
Q ss_pred cc-CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEE
Q 040129 109 RL-FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMII 187 (333)
Q Consensus 109 rl-fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mv 187 (333)
.- +++++.|+++++..||+++. .+...+|+.=.+-|+|||+++
T Consensus 241 ~~~~~~~~~D~v~~~~vlh~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l~ 284 (352)
T 3mcz_A 241 ARNFEGGAADVVMLNDCLHYFDA------------------------------------REAREVIGHAAGLVKPGGALL 284 (352)
T ss_dssp GGGGTTCCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHTEEEEEEEE
T ss_pred CcccCCCCccEEEEecccccCCH------------------------------------HHHHHHHHHHHHHcCCCCEEE
Confidence 44 35567999999999997422 234456776678899999999
Q ss_pred EEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeE
Q 040129 188 ITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEV 258 (333)
Q Consensus 188 l~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~ 258 (333)
+.-...++.... ..+..+.+..+ |+.. .-...++.+|+++++++.| |++..
T Consensus 285 i~e~~~~~~~~~------~~~~~~~~~~~-~~~~------------~~~~~~t~~e~~~ll~~aG-f~~~~ 335 (352)
T 3mcz_A 285 ILTMTMNDDRVT------PALSADFSLHM-MVNT------------NHGELHPTPWIAGVVRDAG-LAVGE 335 (352)
T ss_dssp EEEECCCTTSSS------SHHHHHHHHHH-HHHS------------TTCCCCCHHHHHHHHHHTT-CEEEE
T ss_pred EEEeccCCCCCC------CchHHHhhHHH-HhhC------------CCCCcCCHHHHHHHHHHCC-Cceee
Confidence 875544433211 11122221111 1110 0112468999999999999 98876
No 50
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=98.25 E-value=2.4e-06 Score=76.50 Aligned_cols=148 Identities=16% Similarity=0.172 Sum_probs=85.3
Q ss_pred CcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCcccccc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKR 109 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~r 109 (333)
...+|+|+||++|..+..+.+.. ..+|+..|.-..--...=+.++.....-+..+-+.+..-
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~------------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~ 140 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL------------------FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDF 140 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT------------------CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGC
T ss_pred CCCEEEEECCCCCHHHHHHHHhc------------------CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhc
Confidence 46799999999999887654210 112333333221111111111111000011122233333
Q ss_pred cCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEE
Q 040129 110 LFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIIT 189 (333)
Q Consensus 110 lfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~ 189 (333)
.+|++++|++++..++|++.. .++..+|+.=.+-|+|||++++.
T Consensus 141 ~~~~~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~i~ 184 (241)
T 2ex4_A 141 TPEPDSYDVIWIQWVIGHLTD------------------------------------QHLAEFLRRCKGSLRPNGIIVIK 184 (241)
T ss_dssp CCCSSCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCCCEEEEEEcchhhhCCH------------------------------------HHHHHHHHHHHHhcCCCeEEEEE
Confidence 466779999999999998543 12344566666889999999997
Q ss_pred ecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeC
Q 040129 190 NPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 190 ~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 263 (333)
-....... +| +. .-..+.++.+|++.++++.| |++...+...
T Consensus 185 ~~~~~~~~---------~~---------------------~~-~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~ 226 (241)
T 2ex4_A 185 DNMAQEGV---------IL---------------------DD-VDSSVCRDLDVVRRIICSAG-LSLLAEERQE 226 (241)
T ss_dssp EEEBSSSE---------EE---------------------ET-TTTEEEEBHHHHHHHHHHTT-CCEEEEEECC
T ss_pred EccCCCcc---------ee---------------------cc-cCCcccCCHHHHHHHHHHcC-CeEEEeeecC
Confidence 65433200 00 00 11234569999999999999 9998887664
No 51
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=98.23 E-value=1.9e-05 Score=75.73 Aligned_cols=153 Identities=19% Similarity=0.236 Sum_probs=92.2
Q ss_pred CCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhc-CCccc-cceeeccCccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTS-LPQEI-HFFVAGVPGSF 106 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~-l~~~~-~~f~~~vpgSF 106 (333)
++..+|+|+||++|..+..+.. + .|..+++.-|+|. .-...+. +.... .-=+..+.|+|
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~--------~---------~p~~~~~~~D~~~--~~~~a~~~~~~~~l~~~v~~~~~d~ 261 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLD--------A---------FPGLRGTLLERPP--VAEEARELLTGRGLADRCEILPGDF 261 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHH--------H---------CTTCEEEEEECHH--HHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred ccCcEEEEeCCCccHHHHHHHH--------H---------CCCCeEEEEcCHH--HHHHHHHhhhhcCcCCceEEeccCC
Confidence 3458999999999987755543 2 2456677778742 1111111 11000 00134456777
Q ss_pred ccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceE
Q 040129 107 HKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMI 186 (333)
Q Consensus 107 y~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~m 186 (333)
+ .-+|. +.|++++...||+.+. .+...+|+.=++-|+|||++
T Consensus 262 ~-~~~p~-~~D~v~~~~vlh~~~d------------------------------------~~~~~~L~~~~~~L~pgG~l 303 (369)
T 3gwz_A 262 F-ETIPD-GADVYLIKHVLHDWDD------------------------------------DDVVRILRRIATAMKPDSRL 303 (369)
T ss_dssp T-TCCCS-SCSEEEEESCGGGSCH------------------------------------HHHHHHHHHHHTTCCTTCEE
T ss_pred C-CCCCC-CceEEEhhhhhccCCH------------------------------------HHHHHHHHHHHHHcCCCCEE
Confidence 7 45676 8999999999997432 12234566666899999999
Q ss_pred EEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEE
Q 040129 187 IITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGL 261 (333)
Q Consensus 187 vl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~ 261 (333)
++.-...++... . ....+++ .-|+..| -..+|.+|++++++++| |++.++.-
T Consensus 304 ~i~e~~~~~~~~--~--~~~~~d~-----~~~~~~~-------------g~~~t~~e~~~ll~~aG-f~~~~~~~ 355 (369)
T 3gwz_A 304 LVIDNLIDERPA--A--STLFVDL-----LLLVLVG-------------GAERSESEFAALLEKSG-LRVERSLP 355 (369)
T ss_dssp EEEEEBCCSSCC--H--HHHHHHH-----HHHHHHS-------------CCCBCHHHHHHHHHTTT-EEEEEEEE
T ss_pred EEEEeccCCCCC--C--chhHhhH-----HHHhhcC-------------CccCCHHHHHHHHHHCC-CeEEEEEE
Confidence 997554443221 0 1111111 1111111 13478999999999999 99888764
No 52
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=98.23 E-value=2.7e-05 Score=68.28 Aligned_cols=91 Identities=13% Similarity=0.112 Sum_probs=54.0
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEe
Q 040129 111 FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
++.+++|+++++.++||+.. .++..+|+.-.+-|+|||.++++-
T Consensus 98 ~~~~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 98 KRFHGYDAATVIEVIEHLDL------------------------------------SRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp GGGCSCSEEEEESCGGGCCH------------------------------------HHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred ccCCCcCEEeeHHHHHcCCH------------------------------------HHHHHHHHHHHHHcCCCEEEEEcc
Confidence 45578999999999999632 244556777778899999776654
Q ss_pred cCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHH----HHHHhCCcEEEeEEEEe
Q 040129 191 PSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFG----AVVERNGNFRIEVMGLT 262 (333)
Q Consensus 191 ~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~----~~ie~~G~F~I~~le~~ 262 (333)
.. .....| ..+.. +.. ...-..+..+.+|++ .++++.| |+|+...+-
T Consensus 142 ~~----------~~~~~~-------~~~~~-~~~------~~~~~~~~~~~~~l~~~~~~~~~~~G-f~v~~~~~g 192 (217)
T 3jwh_A 142 NI----------EYNVKF-------ANLPA-GKL------RHKDHRFEWTRSQFQNWANKITERFA-YNVQFQPIG 192 (217)
T ss_dssp BH----------HHHHHT-------C------------------CCSCBCHHHHHHHHHHHHHHSS-EEEEECCCS
T ss_pred Cc----------ccchhh-------ccccc-ccc------cccccccccCHHHHHHHHHHHHHHcC-ceEEEEecC
Confidence 21 011111 11100 100 112233456899999 7888899 988655433
No 53
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=98.23 E-value=1.7e-05 Score=69.32 Aligned_cols=153 Identities=14% Similarity=0.108 Sum_probs=87.7
Q ss_pred CcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCccccc-
Q 040129 30 NTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHK- 108 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~- 108 (333)
...+|+|+||++|..+..+... + .+++..|....-....-+... ..+.+.+..
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~------------------~-~~~~~~D~~~~~~~~~~~~~~-------~~~~~d~~~~ 85 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKEN------------------G-TRVSGIEAFPEAAEQAKEKLD-------HVVLGDIETM 85 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTT------------------T-CEEEEEESSHHHHHHHHTTSS-------EEEESCTTTC
T ss_pred CCCcEEEeCCCCCHHHHHHHhc------------------C-CeEEEEeCCHHHHHHHHHhCC-------cEEEcchhhc
Confidence 4579999999999988665421 1 345555543221111111111 112223322
Q ss_pred -ccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEE
Q 040129 109 -RLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMII 187 (333)
Q Consensus 109 -rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mv 187 (333)
.-+|++++|+++++.++|++.. | ..+|+.=.+-|+|||+++
T Consensus 86 ~~~~~~~~fD~v~~~~~l~~~~~-~-------------------------------------~~~l~~~~~~L~~gG~l~ 127 (230)
T 3cc8_A 86 DMPYEEEQFDCVIFGDVLEHLFD-P-------------------------------------WAVIEKVKPYIKQNGVIL 127 (230)
T ss_dssp CCCSCTTCEEEEEEESCGGGSSC-H-------------------------------------HHHHHHTGGGEEEEEEEE
T ss_pred CCCCCCCccCEEEECChhhhcCC-H-------------------------------------HHHHHHHHHHcCCCCEEE
Confidence 3367889999999999999643 1 133555568899999999
Q ss_pred EEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeC
Q 040129 188 ITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 188 l~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 263 (333)
+....... +..+.. +........+.-..-.....+.+.+|+..++++.| |++..++.+.
T Consensus 128 ~~~~~~~~------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~ 186 (230)
T 3cc8_A 128 ASIPNVSH------------ISVLAP----LLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAG-YSISKVDRVY 186 (230)
T ss_dssp EEEECTTS------------HHHHHH----HHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTT-EEEEEEEEEE
T ss_pred EEeCCcch------------HHHHHH----HhcCCceeccCCCCCcceEEEecHHHHHHHHHHcC-CeEEEEEecc
Confidence 98755321 111111 11111110000000012235579999999999999 9999888775
No 54
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=98.22 E-value=2.1e-05 Score=66.76 Aligned_cols=127 Identities=19% Similarity=0.190 Sum_probs=76.7
Q ss_pred CcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCcccccc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKR 109 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~r 109 (333)
..-+|+|+||++|..+..+... ..+++..|.-..-....=+.++. +..+-+.+..-
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~-------------------~~~v~~~D~~~~~~~~a~~~~~~-----~~~~~~d~~~~ 101 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQ-------------------GHDVLGTDLDPILIDYAKQDFPE-----ARWVVGDLSVD 101 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT-------------------TCEEEEEESCHHHHHHHHHHCTT-----SEEEECCTTTS
T ss_pred CCCeEEEECCCCCHHHHHHHHC-------------------CCcEEEEcCCHHHHHHHHHhCCC-----CcEEEcccccC
Confidence 3469999999999988766531 01234444321111111111110 11122233332
Q ss_pred cCCCCceeEEEec-cccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEE
Q 040129 110 LFPEKFLHLVHVS-YALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIII 188 (333)
Q Consensus 110 lfP~~Sv~~~~Ss-~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl 188 (333)
-+|++++|+++++ ..+|+++. .+...+|+.=.+-|+|||++++
T Consensus 102 ~~~~~~~D~i~~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~l~~~G~l~~ 145 (195)
T 3cgg_A 102 QISETDFDLIVSAGNVMGFLAE------------------------------------DGREPALANIHRALGADGRAVI 145 (195)
T ss_dssp CCCCCCEEEEEECCCCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCCceeEEEECCcHHhhcCh------------------------------------HHHHHHHHHHHHHhCCCCEEEE
Confidence 3577899999998 67887421 2334556666788999999999
Q ss_pred EecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEE
Q 040129 189 TNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMG 260 (333)
Q Consensus 189 ~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le 260 (333)
....... .+.+++...+++.| |++....
T Consensus 146 ~~~~~~~-------------------------------------------~~~~~~~~~l~~~G-f~~~~~~ 173 (195)
T 3cgg_A 146 GFGAGRG-------------------------------------------WVFGDFLEVAERVG-LELENAF 173 (195)
T ss_dssp EEETTSS-------------------------------------------CCHHHHHHHHHHHT-EEEEEEE
T ss_pred EeCCCCC-------------------------------------------cCHHHHHHHHHHcC-CEEeeee
Confidence 8643210 57888999999999 8887765
No 55
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=98.21 E-value=8.4e-06 Score=75.84 Aligned_cols=168 Identities=9% Similarity=-0.009 Sum_probs=89.3
Q ss_pred CCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccc-cceeeccCcccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEI-HFFVAGVPGSFH 107 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~-~~f~~~vpgSFy 107 (333)
+..-+|+|+||++|..++.+.. . ..|..+|+--|.-..--...=+.+.... .-=+..+.+.+.
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~-----------~-----~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 180 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDY-----------S-----ACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAW 180 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCC-----------T-----TCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGG
T ss_pred CCCCEEEEecCCCCHHHHHHHH-----------h-----cCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchh
Confidence 3457899999999998866520 0 0233344444442211111111111100 000112234444
Q ss_pred cccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEE
Q 040129 108 KRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMII 187 (333)
Q Consensus 108 ~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mv 187 (333)
.-.+| +++|+++++.++||+.. . .....+|+.=.+-|+|||+++
T Consensus 181 ~~~~~-~~fD~v~~~~~~~~~~~---~--------------------------------~~~~~~l~~~~~~LkpgG~l~ 224 (305)
T 3ocj_A 181 KLDTR-EGYDLLTSNGLNIYEPD---D--------------------------------ARVTELYRRFWQALKPGGALV 224 (305)
T ss_dssp GCCCC-SCEEEEECCSSGGGCCC---H--------------------------------HHHHHHHHHHHHHEEEEEEEE
T ss_pred cCCcc-CCeEEEEECChhhhcCC---H--------------------------------HHHHHHHHHHHHhcCCCeEEE
Confidence 43456 89999999999998432 1 112234555568899999999
Q ss_pred EEecCCCCCCCCcc-----chhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEE
Q 040129 188 ITNPSIPDGMPFSE-----IANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGL 261 (333)
Q Consensus 188 l~~~gr~~~~~~~~-----~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~ 261 (333)
+....++....... .............+.+....+ + ..+++.+|++..++++| |++..++.
T Consensus 225 i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~l~~aG-F~~v~~~~ 290 (305)
T 3ocj_A 225 TSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPR-----------W-NALRTHAQTRAQLEEAG-FTDLRFED 290 (305)
T ss_dssp EECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCS-----------C-CCCCCHHHHHHHHHHTT-CEEEEEEC
T ss_pred EEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhh-----------h-hccCCHHHHHHHHHHCC-CEEEEEEc
Confidence 99877654322111 000111111222222111111 1 14579999999999999 99877775
No 56
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=98.21 E-value=1.1e-05 Score=77.32 Aligned_cols=158 Identities=18% Similarity=0.158 Sum_probs=93.0
Q ss_pred CcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhc-CCccc-cceeeccCcccc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTS-LPQEI-HFFVAGVPGSFH 107 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~-l~~~~-~~f~~~vpgSFy 107 (333)
+.-+|+|+||++|..+..+.+ + .|..++..-|+|.. -...+. ++... .-=+.-+.|+|+
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~--------~---------~p~~~~~~~D~~~~--~~~a~~~~~~~~~~~~v~~~~~d~~ 239 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQ--------Y---------NKEVEVTIVDLPQQ--LEMMRKQTAGLSGSERIHGHGANLL 239 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHH--------H---------STTCEEEEEECHHH--HHHHHHHHTTCTTGGGEEEEECCCC
T ss_pred CCCEEEEeCCCcCHHHHHHHH--------h---------CCCCEEEEEeCHHH--HHHHHHHHHhcCcccceEEEEcccc
Confidence 346999999999998866653 1 24567888887531 112111 11110 011445677887
Q ss_pred cc--cCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCce
Q 040129 108 KR--LFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGM 185 (333)
Q Consensus 108 ~r--lfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~ 185 (333)
.. -+| ++.|+++++..||.++. .+...+|+.=.+-|+|||+
T Consensus 240 ~~~~~~p-~~~D~v~~~~vlh~~~~------------------------------------~~~~~~l~~~~~~L~pgG~ 282 (363)
T 3dp7_A 240 DRDVPFP-TGFDAVWMSQFLDCFSE------------------------------------EEVISILTRVAQSIGKDSK 282 (363)
T ss_dssp SSSCCCC-CCCSEEEEESCSTTSCH------------------------------------HHHHHHHHHHHHHCCTTCE
T ss_pred ccCCCCC-CCcCEEEEechhhhCCH------------------------------------HHHHHHHHHHHHhcCCCcE
Confidence 65 367 88999999999985321 2334556666688999999
Q ss_pred EEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEE
Q 040129 186 IIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMG 260 (333)
Q Consensus 186 mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le 260 (333)
+++.-...++... ....+... ....+|... .......+|.+|++++++++| |++.++.
T Consensus 283 l~i~e~~~~~~~~-----~~~~~~~~-~~~~~~~~~----------~~~~~~~~t~~e~~~ll~~AG-f~~v~~~ 340 (363)
T 3dp7_A 283 VYIMETLWDRQRY-----ETASYCLT-QISLYFTAM----------ANGNSKMFHSDDLIRCIENAG-LEVEEIQ 340 (363)
T ss_dssp EEEEECCTTSCSS-----HHHHHHHH-HHHHHHHHS----------SCSSCCSCCHHHHHHHHHTTT-EEESCCC
T ss_pred EEEEeeccCCccc-----cchhhHHH-HhhhhHHhh----------hCCCCcccCHHHHHHHHHHcC-CeEEEEE
Confidence 9887544333221 11111111 111111000 112234569999999999999 9876654
No 57
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=98.21 E-value=4.2e-06 Score=75.19 Aligned_cols=171 Identities=14% Similarity=0.114 Sum_probs=89.1
Q ss_pred CcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCcccccc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKR 109 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~r 109 (333)
...+|+|+||++|..+..+... .+. +|+.-|+...=-...=+.+. ..+ +..+.+++..-
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~-----------------~~~-~v~~vD~s~~~~~~a~~~~~-~~~--~~~~~~d~~~~ 102 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEH-----------------GAK-KVLGIDLSERMLTEAKRKTT-SPV--VCYEQKAIEDI 102 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-----------------TCS-EEEEEESCHHHHHHHHHHCC-CTT--EEEEECCGGGC
T ss_pred CCCEEEEECCCCCHHHHHHHHc-----------------CCC-EEEEEECCHHHHHHHHHhhc-cCC--eEEEEcchhhC
Confidence 4689999999999877665421 011 45555553211111111111 111 11122333333
Q ss_pred cCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEE
Q 040129 110 LFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIIT 189 (333)
Q Consensus 110 lfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~ 189 (333)
-+|++++|+++++.++||+.. ...+|+.=.+-|+|||++++.
T Consensus 103 ~~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~LkpgG~l~~~ 144 (253)
T 3g5l_A 103 AIEPDAYNVVLSSLALHYIAS--------------------------------------FDDICKKVYINLKSSGSFIFS 144 (253)
T ss_dssp CCCTTCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCCCeEEEEEchhhhhhhh--------------------------------------HHHHHHHHHHHcCCCcEEEEE
Confidence 467899999999999999722 123455556889999999998
Q ss_pred ecCCCCCCCCcc----chhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeCC
Q 040129 190 NPSIPDGMPFSE----IANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTNP 264 (333)
Q Consensus 190 ~~gr~~~~~~~~----~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p 264 (333)
............ ...+.. +...+.....++.... ....-....|.+|.+|+.++++++| |++..++...|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~t~~~~~~~l~~aG-F~~~~~~e~~~ 218 (253)
T 3g5l_A 145 VEHPVFTADGRQDWYTDETGNK---LHWPVDRYFNESMRTS-HFLGEDVQKYHRTVTTYIQTLLKNG-FQINSVIEPEP 218 (253)
T ss_dssp EECHHHHSSSSCSCEECSSCCE---EEEEECCTTCCCEEEE-EETTEEEEEECCCHHHHHHHHHHTT-EEEEEEECCCC
T ss_pred eCCCccccCccccceeccCCce---EEEEeccccccceEEE-eeccccCccEecCHHHHHHHHHHcC-CeeeeeecCCC
Confidence 643210000000 000000 0000000000110000 0001134567789999999999999 99988876543
No 58
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=98.20 E-value=1.9e-05 Score=73.98 Aligned_cols=158 Identities=13% Similarity=0.074 Sum_probs=92.2
Q ss_pred CCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhc-CCccc-cceeeccCccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTS-LPQEI-HFFVAGVPGSF 106 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~-l~~~~-~~f~~~vpgSF 106 (333)
.+..+|+|+||++|..+..+.+ + .|..+++.-|++ +.-...+. +.... .-=+..+.+.+
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~--------~---------~p~~~~~~~D~~--~~~~~a~~~~~~~~~~~~v~~~~~d~ 224 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQ--------H---------NPNAEIFGVDWA--SVLEVAKENARIQGVASRYHTIAGSA 224 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHH--------H---------CTTCEEEEEECH--HHHHHHHHHHHHHTCGGGEEEEESCT
T ss_pred CCCCEEEEECCCcCHHHHHHHH--------H---------CCCCeEEEEecH--HHHHHHHHHHHhcCCCcceEEEeccc
Confidence 3457999999999987655442 1 134678888886 33333222 11100 00123345666
Q ss_pred ccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceE
Q 040129 107 HKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMI 186 (333)
Q Consensus 107 y~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~m 186 (333)
..--+|.+ .|+++++..+|.++. .+...+|+.=.+-|+|||++
T Consensus 225 ~~~~~~~~-~D~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l 267 (335)
T 2r3s_A 225 FEVDYGND-YDLVLLPNFLHHFDV------------------------------------ATCEQLLRKIKTALAVEGKV 267 (335)
T ss_dssp TTSCCCSC-EEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEE
T ss_pred ccCCCCCC-CcEEEEcchhccCCH------------------------------------HHHHHHHHHHHHhCCCCcEE
Confidence 65445655 999999999997421 23445566666889999999
Q ss_pred EEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEe
Q 040129 187 IITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLT 262 (333)
Q Consensus 187 vl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~ 262 (333)
++.-...++.... . .+..+...+ -|... .....++.+|+++++++.| |++.++..+
T Consensus 268 ~i~e~~~~~~~~~-~-----~~~~~~~~~-~~~~~------------~~~~~~t~~~~~~ll~~aG-f~~~~~~~~ 323 (335)
T 2r3s_A 268 IVFDFIPNSDRIT-P-----PDAAAFSLV-MLATT------------PNGDAYTFAEYESMFSNAG-FSHSQLHSL 323 (335)
T ss_dssp EEEECCCCTTSSC-S-----HHHHHHHHH-HHHHS------------SSCCCCCHHHHHHHHHHTT-CSEEEEECC
T ss_pred EEEeecCCCCcCC-c-----hHHHHHHHH-HHeeC------------CCCCcCCHHHHHHHHHHCC-CCeeeEEEC
Confidence 8886555432111 1 111111111 11111 0124569999999999999 987766543
No 59
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=98.19 E-value=1.5e-05 Score=76.17 Aligned_cols=151 Identities=17% Similarity=0.181 Sum_probs=91.4
Q ss_pred EEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhc-CCccccceeeccCccccccc
Q 040129 32 IRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTS-LPQEIHFFVAGVPGSFHKRL 110 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~-l~~~~~~f~~~vpgSFy~rl 110 (333)
-+|+|+||++|..++.+.+ + .|.+.+..-|+|.- -...+. ++....==+..++|+|+..-
T Consensus 181 ~~v~DvGgG~G~~~~~l~~--------~---------~p~~~~~~~dlp~v--~~~a~~~~~~~~~~rv~~~~gD~~~~~ 241 (353)
T 4a6d_A 181 PLMCDLGGGAGALAKECMS--------L---------YPGCKITVFDIPEV--VWTAKQHFSFQEEEQIDFQEGDFFKDP 241 (353)
T ss_dssp SEEEEETCTTSHHHHHHHH--------H---------CSSCEEEEEECHHH--HHHHHHHSCC--CCSEEEEESCTTTSC
T ss_pred CeEEeeCCCCCHHHHHHHH--------h---------CCCceeEeccCHHH--HHHHHHhhhhcccCceeeecCccccCC
Confidence 4899999999987755542 2 36678888899852 111121 11110011455789999875
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEe
Q 040129 111 FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
+|. -|+++..+.||-. |+ .+-..+|+.=++-|+|||++++.=
T Consensus 242 ~~~--~D~~~~~~vlh~~---~d---------------------------------~~~~~iL~~~~~al~pgg~lli~e 283 (353)
T 4a6d_A 242 LPE--ADLYILARVLHDW---AD---------------------------------GKCSHLLERIYHTCKPGGGILVIE 283 (353)
T ss_dssp CCC--CSEEEEESSGGGS---CH---------------------------------HHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCC--ceEEEeeeecccC---CH---------------------------------HHHHHHHHHHHhhCCCCCEEEEEE
Confidence 554 5999999999932 32 233445676678899999998874
Q ss_pred cCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEE
Q 040129 191 PSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMG 260 (333)
Q Consensus 191 ~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le 260 (333)
.-.+++.. .. .....+++ .=|+. ..--.||.+|+++++++.| |++.++.
T Consensus 284 ~~~~~~~~-~~-~~~~~~dl-----~ml~~-------------~~g~ert~~e~~~ll~~AG-f~~v~v~ 332 (353)
T 4a6d_A 284 SLLDEDRR-GP-LLTQLYSL-----NMLVQ-------------TEGQERTPTHYHMLLSSAG-FRDFQFK 332 (353)
T ss_dssp CCCCTTSC-CC-HHHHHHHH-----HHHHS-------------SSCCCCCHHHHHHHHHHHT-CEEEEEE
T ss_pred eeeCCCCC-CC-HHHHHHHH-----HHHHh-------------CCCcCCCHHHHHHHHHHCC-CceEEEE
Confidence 33332211 11 11111121 11111 1123579999999999999 9877654
No 60
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=98.18 E-value=1.4e-05 Score=75.25 Aligned_cols=152 Identities=14% Similarity=0.074 Sum_probs=90.0
Q ss_pred CCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhc-CCccc-cceeeccCccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTS-LPQEI-HFFVAGVPGSF 106 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~-l~~~~-~~f~~~vpgSF 106 (333)
++..+|+|+||++|..+..+.+ + .|..++..-|+|. .-...+. +.... .-=+.-+.|+|
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~--------~---------~p~~~~~~~D~~~--~~~~a~~~~~~~~~~~~v~~~~~d~ 228 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLT--------A---------HEDLSGTVLDLQG--PASAAHRRFLDTGLSGRAQVVVGSF 228 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHH--------H---------CTTCEEEEEECHH--HHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred CCCCEEEEeCCChhHHHHHHHH--------H---------CCCCeEEEecCHH--HHHHHHHhhhhcCcCcCeEEecCCC
Confidence 3457999999999977655442 2 1345566667742 1111111 11000 00134456777
Q ss_pred ccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceE
Q 040129 107 HKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMI 186 (333)
Q Consensus 107 y~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~m 186 (333)
+ .-+|. +.|++++.+.||..+. .+...+|+.=++-|+|||++
T Consensus 229 ~-~~~p~-~~D~v~~~~vlh~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l 270 (332)
T 3i53_A 229 F-DPLPA-GAGGYVLSAVLHDWDD------------------------------------LSAVAILRRCAEAAGSGGVV 270 (332)
T ss_dssp T-SCCCC-SCSEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHHTTTCEE
T ss_pred C-CCCCC-CCcEEEEehhhccCCH------------------------------------HHHHHHHHHHHHhcCCCCEE
Confidence 7 44676 8999999999996322 22344566666889999999
Q ss_pred EEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEe
Q 040129 187 IITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLT 262 (333)
Q Consensus 187 vl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~ 262 (333)
++.-.-.++..+ ...++... |+.. ....+|.+|++++++++| |++.++...
T Consensus 271 ~i~e~~~~~~~~------~~~~d~~~-----~~~~-------------~~~~~t~~e~~~ll~~aG-f~~~~~~~~ 321 (332)
T 3i53_A 271 LVIEAVAGDEHA------GTGMDLRM-----LTYF-------------GGKERSLAELGELAAQAG-LAVRAAHPI 321 (332)
T ss_dssp EEEECCCC---C------CHHHHHHH-----HHHH-------------SCCCCCHHHHHHHHHHTT-EEEEEEEEC
T ss_pred EEEeecCCCCCc------cHHHHHHH-----HhhC-------------CCCCCCHHHHHHHHHHCC-CEEEEEEEC
Confidence 997544433211 11222221 1111 123578999999999999 998777643
No 61
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=98.18 E-value=3.5e-05 Score=67.89 Aligned_cols=91 Identities=14% Similarity=0.175 Sum_probs=59.9
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEe
Q 040129 111 FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
+|++++|+++++.++||+.. | ..+|+.=.+-|+|||.+++..
T Consensus 98 ~~~~~fD~v~~~~~l~~~~~-~-------------------------------------~~~l~~~~~~L~pgG~l~i~~ 139 (219)
T 1vlm_A 98 LKDESFDFALMVTTICFVDD-P-------------------------------------ERALKEAYRILKKGGYLIVGI 139 (219)
T ss_dssp SCTTCEEEEEEESCGGGSSC-H-------------------------------------HHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCeeEEEEcchHhhccC-H-------------------------------------HHHHHHHHHHcCCCcEEEEEE
Confidence 56788999999999999632 1 123444457799999999988
Q ss_pred cCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEe
Q 040129 191 PSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLT 262 (333)
Q Consensus 191 ~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~ 262 (333)
....+ .+..+ +... ..+ ..+.....+.+.+|++.++++.| |++..+...
T Consensus 140 ~~~~~-----------~~~~~---~~~~-~~~-------~~~~~~~~~~~~~~l~~~l~~~G-f~~~~~~~~ 188 (219)
T 1vlm_A 140 VDRES-----------FLGRE---YEKN-KEK-------SVFYKNARFFSTEELMDLMRKAG-FEEFKVVQT 188 (219)
T ss_dssp ECSSS-----------HHHHH---HHHT-TTC--------CCSTTCCCCCHHHHHHHHHHTT-CEEEEEEEE
T ss_pred eCCcc-----------HHHHH---HHHH-hcC-------cchhcccccCCHHHHHHHHHHCC-CeEEEEecc
Confidence 65421 11111 1111 111 12334456679999999999999 998887754
No 62
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=98.15 E-value=2.9e-05 Score=71.80 Aligned_cols=145 Identities=12% Similarity=0.181 Sum_probs=81.3
Q ss_pred CcEEEEeecCCCCcccHHHHHH---------------HHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCcc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQD---------------LIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQE 94 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~---------------ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~ 94 (333)
..-+|+|+||++|..+..+.+. .++..+++..... ...+.+++...|...-+|..
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~v~~~~~d~~~~~~~~-------- 105 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSP--DTYKNVSFKISSSDDFKFLG-------- 105 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC---CCTTEEEEECCTTCCGGGC--------
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcc--CCCCceEEEEcCHHhCCccc--------
Confidence 4579999999999999887742 2333333333210 01234555555543211100
Q ss_pred ccceeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHH
Q 040129 95 IHFFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLN 174 (333)
Q Consensus 95 ~~~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~ 174 (333)
...++.+++|+++++.++||+ . |. .+|+
T Consensus 106 -------------~~~~~~~~fD~V~~~~~l~~~-~-~~-------------------------------------~~l~ 133 (299)
T 3g5t_A 106 -------------ADSVDKQKIDMITAVECAHWF-D-FE-------------------------------------KFQR 133 (299)
T ss_dssp -------------TTTTTSSCEEEEEEESCGGGS-C-HH-------------------------------------HHHH
T ss_pred -------------cccccCCCeeEEeHhhHHHHh-C-HH-------------------------------------HHHH
Confidence 112344899999999999997 2 21 2344
Q ss_pred hhhhhhccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCccc-CCHHHHHHHHHhCCc
Q 040129 175 NRAKEIVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYA-CPPGEFGAVVERNGN 253 (333)
Q Consensus 175 ~Ra~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~-ps~~E~~~~ie~~G~ 253 (333)
.=.+-|+|||.+++...+.+...... .+...+.++.... ....|++. |..+.++..+++.|
T Consensus 134 ~~~~~LkpgG~l~i~~~~~~~~~~~~---------~~~~~~~~~~~~~--------~~~~~~w~~p~~~~~~~~l~~~g- 195 (299)
T 3g5t_A 134 SAYANLRKDGTIAIWGYADPIFPDYP---------EFDDLMIEVPYGK--------QGLGPYWEQPGRSRLRNMLKDSH- 195 (299)
T ss_dssp HHHHHEEEEEEEEEEEEEEEECTTCG---------GGTTHHHHHHHCT--------TTTGGGSCTTHHHHHHTTTTTCC-
T ss_pred HHHHhcCCCcEEEEEecCCccccCcH---------HHHHHHHHhccCc--------ccccchhhchhhHHHHHhhhccC-
Confidence 44578999999998655432111000 1111222222110 12345444 88888999999988
Q ss_pred E
Q 040129 254 F 254 (333)
Q Consensus 254 F 254 (333)
|
T Consensus 196 f 196 (299)
T 3g5t_A 196 L 196 (299)
T ss_dssp C
T ss_pred C
Confidence 5
No 63
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=98.15 E-value=2.4e-06 Score=79.21 Aligned_cols=162 Identities=12% Similarity=0.114 Sum_probs=88.2
Q ss_pred EEEeecCCCCcccHHHH------------HHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceee
Q 040129 33 RLADCGCAVGPNTFNAM------------QDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVA 100 (333)
Q Consensus 33 ~IaD~GCs~G~Ns~~~~------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~ 100 (333)
+|+|+||++|..+..+. ...++..+++....+.. -...++++..|..
T Consensus 85 ~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~~~v~~~~~d~~-------------------- 143 (299)
T 3g2m_A 85 PVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPAD-VRDRCTLVQGDMS-------------------- 143 (299)
T ss_dssp CEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHH-HHTTEEEEECBTT--------------------
T ss_pred cEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccc-cccceEEEeCchh--------------------
Confidence 89999999999998876 23344444433321000 0012444444432
Q ss_pred ccCcccccccCCCCceeEEE-eccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhh
Q 040129 101 GVPGSFHKRLFPEKFLHLVH-VSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKE 179 (333)
Q Consensus 101 ~vpgSFy~rlfP~~Sv~~~~-Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~E 179 (333)
. +-+++++|+++ +..++||++. .|...+|+.=++-
T Consensus 144 -------~-~~~~~~fD~v~~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~ 179 (299)
T 3g2m_A 144 -------A-FALDKRFGTVVISSGSINELDE------------------------------------ADRRGLYASVREH 179 (299)
T ss_dssp -------B-CCCSCCEEEEEECHHHHTTSCH------------------------------------HHHHHHHHHHHHH
T ss_pred -------c-CCcCCCcCEEEECCcccccCCH------------------------------------HHHHHHHHHHHHH
Confidence 1 11257799777 5688998532 3445567777788
Q ss_pred hccCceEEEEecCCCCCCCCccchhhHHHHHH-HHHHHHHHhccCCC---------------HhhhhcCCcCcccCCHHH
Q 040129 180 IVPGGMIIITNPSIPDGMPFSEIANGLMYNCM-GTILYDMVKVGLLS---------------EAQVDSFNLPIYACPPGE 243 (333)
Q Consensus 180 L~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l-~~~l~~mv~eG~i~---------------~~~~d~fn~P~y~ps~~E 243 (333)
|+|||++++............. .....|... ...+ ........ ...+..+....++.+.+|
T Consensus 180 L~pgG~l~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 256 (299)
T 3g2m_A 180 LEPGGKFLLSLAMSEAAESEPL-ERKQELPGRSGRRY--VLHVRHLPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQ 256 (299)
T ss_dssp EEEEEEEEEEEECCHHHHSCCC-CC---------------CCEEEEEEEEEEEEEEEESCC--CCCCEEEEEEEEECHHH
T ss_pred cCCCcEEEEEeecCccccccch-hccceeecCCCcEE--EEEEEEeccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHH
Confidence 9999999999876542110000 000000000 0000 00000000 001112334555779999
Q ss_pred HHHHHHhCCcEEEeEEEEeC
Q 040129 244 FGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 244 ~~~~ie~~G~F~I~~le~~~ 263 (333)
++.+++++| |++...+.+.
T Consensus 257 l~~ll~~aG-F~v~~~~~~~ 275 (299)
T 3g2m_A 257 VVRELVRSG-FDVIAQTPFA 275 (299)
T ss_dssp HHHHHHHTT-CEEEEEEEEC
T ss_pred HHHHHHHCC-CEEEEEEecC
Confidence 999999999 9999998775
No 64
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=98.15 E-value=7.2e-05 Score=70.18 Aligned_cols=152 Identities=16% Similarity=0.191 Sum_probs=90.9
Q ss_pred EEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccc-cceeeccCccccccc
Q 040129 32 IRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEI-HFFVAGVPGSFHKRL 110 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~-~~f~~~vpgSFy~rl 110 (333)
.+|+|+||++|..+..+.. + .|..+++.-|+|.- -...=+.+.... .-=+..+.|+|...
T Consensus 169 ~~vlDvG~G~G~~~~~l~~--------~---------~p~~~~~~~D~~~~-~~~a~~~~~~~~~~~~v~~~~~d~~~~- 229 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQ--------A---------EPSARGVMLDREGS-LGVARDNLSSLLAGERVSLVGGDMLQE- 229 (334)
T ss_dssp CEEEEETCTTCHHHHHHHH--------H---------CTTCEEEEEECTTC-THHHHHHTHHHHHTTSEEEEESCTTTC-
T ss_pred CEEEEeCCCchHHHHHHHH--------H---------CCCCEEEEeCcHHH-HHHHHHHHhhcCCCCcEEEecCCCCCC-
Confidence 7999999999987765542 2 24467888998432 221111121110 00134466788774
Q ss_pred CCCCceeEEEeccccc-cccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEE
Q 040129 111 FPEKFLHLVHVSYALH-WLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIIT 189 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alH-WLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~ 189 (333)
+| ++.|++++...+| | |. .+...+|+.=.+-|+|||++++.
T Consensus 230 ~~-~~~D~v~~~~vl~~~----~~---------------------------------~~~~~~l~~~~~~L~pgG~l~i~ 271 (334)
T 2ip2_A 230 VP-SNGDIYLLSRIIGDL----DE---------------------------------AASLRLLGNCREAMAGDGRVVVI 271 (334)
T ss_dssp CC-SSCSEEEEESCGGGC----CH---------------------------------HHHHHHHHHHHHHSCTTCEEEEE
T ss_pred CC-CCCCEEEEchhccCC----CH---------------------------------HHHHHHHHHHHHhcCCCCEEEEE
Confidence 66 6899999999998 5 21 12234566666889999999998
Q ss_pred ecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEe
Q 040129 190 NPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLT 262 (333)
Q Consensus 190 ~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~ 262 (333)
-...++... . .....++.. -|...| -..++.+|+++++++.| |++.++...
T Consensus 272 e~~~~~~~~--~-~~~~~~~~~-----~~~~~~-------------~~~~t~~e~~~ll~~aG-f~~~~~~~~ 322 (334)
T 2ip2_A 272 ERTISASEP--S-PMSVLWDVH-----LFMACA-------------GRHRTTEEVVDLLGRGG-FAVERIVDL 322 (334)
T ss_dssp ECCBCSSSC--C-HHHHHHHHH-----HHHHHS-------------CCCCBHHHHHHHHHHTT-EEEEEEEEE
T ss_pred EeccCCCCC--c-chhHHhhhH-----hHhhCC-------------CcCCCHHHHHHHHHHCC-CceeEEEEC
Confidence 554443221 0 111112211 111111 13468999999999999 998776643
No 65
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=98.13 E-value=4e-05 Score=67.71 Aligned_cols=46 Identities=15% Similarity=0.417 Sum_probs=35.5
Q ss_pred CCCCceeEEEecc-ccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEE
Q 040129 111 FPEKFLHLVHVSY-ALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIIT 189 (333)
Q Consensus 111 fP~~Sv~~~~Ss~-alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~ 189 (333)
+| +++|+++++. ++||+.. ..|...+|+.=++-|+|||++++.
T Consensus 98 ~~-~~fD~v~~~~~~l~~~~~-----------------------------------~~~~~~~l~~~~~~L~pgG~l~~~ 141 (246)
T 1y8c_A 98 IN-RKFDLITCCLDSTNYIID-----------------------------------SDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp CS-CCEEEEEECTTGGGGCCS-----------------------------------HHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cc-CCceEEEEcCccccccCC-----------------------------------HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 44 7899999998 9999632 034556677777899999999997
Q ss_pred ecC
Q 040129 190 NPS 192 (333)
Q Consensus 190 ~~g 192 (333)
+..
T Consensus 142 ~~~ 144 (246)
T 1y8c_A 142 INS 144 (246)
T ss_dssp EEC
T ss_pred ecC
Confidence 754
No 66
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=98.13 E-value=2.9e-05 Score=69.67 Aligned_cols=85 Identities=15% Similarity=0.225 Sum_probs=59.5
Q ss_pred CceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEecCC
Q 040129 114 KFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITNPSI 193 (333)
Q Consensus 114 ~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~gr 193 (333)
+++|+++|+.+||++.. .+ .|...+|+.=.+-|+|||++++.....
T Consensus 156 ~~fD~v~~~~~l~~~~~---~~-------------------------------~~~~~~l~~~~~~LkpgG~li~~~~~~ 201 (265)
T 2i62_A 156 PPADCLLSTLCLDAACP---DL-------------------------------PAYRTALRNLGSLLKPGGFLVMVDALK 201 (265)
T ss_dssp CCEEEEEEESCHHHHCS---SH-------------------------------HHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred CCccEEEEhhhhhhhcC---Ch-------------------------------HHHHHHHHHHHhhCCCCcEEEEEecCC
Confidence 89999999999997532 11 345556666678899999999987432
Q ss_pred CCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeC
Q 040129 194 PDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 263 (333)
.+ ... .| ....+.+..+.+++..++++.| |++..++...
T Consensus 202 ~~---~~~-------------------~~--------~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~ 240 (265)
T 2i62_A 202 SS---YYM-------------------IG--------EQKFSSLPLGWETVRDAVEEAG-YTIEQFEVIS 240 (265)
T ss_dssp CC---EEE-------------------ET--------TEEEECCCCCHHHHHHHHHHTT-CEEEEEEEEC
T ss_pred Cc---eEE-------------------cC--------CccccccccCHHHHHHHHHHCC-CEEEEEEEec
Confidence 11 000 01 1123345568999999999999 9999888764
No 67
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=98.12 E-value=2.4e-05 Score=74.53 Aligned_cols=156 Identities=15% Similarity=0.180 Sum_probs=88.6
Q ss_pred CCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhc-CCccc-cceeeccCccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTS-LPQEI-HFFVAGVPGSF 106 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~-l~~~~-~~f~~~vpgSF 106 (333)
++..+|+|+||++|..++.+... .|..+++.-|+| +.-...+. +.... .-=+..+.+.|
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~-----------------~~~~~~~~~D~~--~~~~~a~~~~~~~~~~~~v~~~~~d~ 241 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALR-----------------APHLRGTLVELA--GPAERARRRFADAGLADRVTVAEGDF 241 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHH-----------------CTTCEEEEEECH--HHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred CCCCEEEEECCCcCHHHHHHHHH-----------------CCCCEEEEEeCH--HHHHHHHHHHHhcCCCCceEEEeCCC
Confidence 34579999999999777655431 134567777772 22222111 11000 00123355666
Q ss_pred ccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceE
Q 040129 107 HKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMI 186 (333)
Q Consensus 107 y~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~m 186 (333)
.. -+|.+ +|+++++..+|+++. .+...+|+.=.+-|+|||++
T Consensus 242 ~~-~~~~~-~D~v~~~~vl~~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l 283 (374)
T 1qzz_A 242 FK-PLPVT-ADVVLLSFVLLNWSD------------------------------------EDALTILRGCVRALEPGGRL 283 (374)
T ss_dssp TS-CCSCC-EEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEE
T ss_pred CC-cCCCC-CCEEEEeccccCCCH------------------------------------HHHHHHHHHHHHhcCCCcEE
Confidence 65 35654 999999999986321 12234555556889999999
Q ss_pred EEEec--CCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeC
Q 040129 187 IITNP--SIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 187 vl~~~--gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 263 (333)
++.-. ..++.. ...+..+...+. ++..| ...++.+|+++++++.| |++.++....
T Consensus 284 ~i~e~~~~~~~~~-------~~~~~~~~~~~~-~~~~~-------------~~~~~~~~~~~ll~~aG-f~~~~~~~~~ 340 (374)
T 1qzz_A 284 LVLDRADVEGDGA-------DRFFSTLLDLRM-LTFMG-------------GRVRTRDEVVDLAGSAG-LALASERTSG 340 (374)
T ss_dssp EEEECCH--------------HHHHHHHHHHH-HHHHS-------------CCCCCHHHHHHHHHTTT-EEEEEEEEEC
T ss_pred EEEechhhcCCCC-------CcchhhhcchHH-HHhCC-------------CcCCCHHHHHHHHHHCC-CceEEEEECC
Confidence 98765 332211 011111111111 11111 24579999999999999 9988877654
No 68
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=98.09 E-value=7.8e-05 Score=62.52 Aligned_cols=133 Identities=9% Similarity=0.077 Sum_probs=78.9
Q ss_pred CCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccc-eeeccCcccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHF-FVAGVPGSFH 107 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~-f~~~vpgSFy 107 (333)
....+|+|+||++|..+..+.... . +|+--|.-..=-...-+..+ ++ |.. +.
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~------------------~-~v~~vD~s~~~~~~a~~~~~---~v~~~~---~d-- 68 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFA------------------T-KLYCIDINVIALKEVKEKFD---SVITLS---DP-- 68 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTE------------------E-EEEEECSCHHHHHHHHHHCT---TSEEES---SG--
T ss_pred CCCCeEEEECCCCCHHHHHHHhhc------------------C-eEEEEeCCHHHHHHHHHhCC---CcEEEe---CC--
Confidence 345799999999999987765321 1 33444432211111111111 11 111 11
Q ss_pred cccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEE
Q 040129 108 KRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMII 187 (333)
Q Consensus 108 ~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mv 187 (333)
.-+|++++|+++++.++||+.. ...+|+.=.+-|+|||+++
T Consensus 69 -~~~~~~~~D~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~ 109 (170)
T 3i9f_A 69 -KEIPDNSVDFILFANSFHDMDD--------------------------------------KQHVISEVKRILKDDGRVI 109 (170)
T ss_dssp -GGSCTTCEEEEEEESCSTTCSC--------------------------------------HHHHHHHHHHHEEEEEEEE
T ss_pred -CCCCCCceEEEEEccchhcccC--------------------------------------HHHHHHHHHHhcCCCCEEE
Confidence 2367889999999999999632 1123444457899999999
Q ss_pred EEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeC
Q 040129 188 ITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 188 l~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 263 (333)
+.-....+..... ......+.+|++..++ | |++.....+.
T Consensus 110 ~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~l~--G-f~~~~~~~~~ 149 (170)
T 3i9f_A 110 IIDWRKENTGIGP---------------------------------PLSIRMDEKDYMGWFS--N-FVVEKRFNPT 149 (170)
T ss_dssp EEEECSSCCSSSS---------------------------------CGGGCCCHHHHHHHTT--T-EEEEEEECSS
T ss_pred EEEcCccccccCc---------------------------------hHhhhcCHHHHHHHHh--C-cEEEEccCCC
Confidence 9976554322100 0012358999999999 8 9987776543
No 69
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=98.08 E-value=2.1e-05 Score=69.59 Aligned_cols=168 Identities=18% Similarity=0.172 Sum_probs=87.2
Q ss_pred CcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCcccccc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKR 109 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~r 109 (333)
..-+|+|+||++|..+..+.+. + . -+|+..|.-..=-...=+..... + +..+.+.+..-
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~------------~-----~-~~v~~vD~s~~~~~~a~~~~~~~-~--~~~~~~d~~~~ 101 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEH------------G-----A-SYVLGLDLSEKMLARARAAGPDT-G--ITYERADLDKL 101 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT------------T-----C-SEEEEEESCHHHHHHHHHTSCSS-S--EEEEECCGGGC
T ss_pred CCCEEEEEcCcCCHHHHHHHHC------------C-----C-CeEEEEcCCHHHHHHHHHhcccC-C--ceEEEcChhhc
Confidence 3469999999999987655431 0 0 13555554321111111111111 1 11223344443
Q ss_pred cCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEE
Q 040129 110 LFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIIT 189 (333)
Q Consensus 110 lfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~ 189 (333)
.+|++++|+++++.++||+.. ...+|+.=++-|+|||++++.
T Consensus 102 ~~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~~~ 143 (243)
T 3bkw_A 102 HLPQDSFDLAYSSLALHYVED--------------------------------------VARLFRTVHQALSPGGHFVFS 143 (243)
T ss_dssp CCCTTCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCCCceEEEEeccccccch--------------------------------------HHHHHHHHHHhcCcCcEEEEE
Confidence 468899999999999999632 112344445789999999998
Q ss_pred ecCCCCCCCCcc----chhhH-HHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeC
Q 040129 190 NPSIPDGMPFSE----IANGL-MYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 190 ~~gr~~~~~~~~----~~~~~-~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 263 (333)
............ ...+. .+. +.....++..... .-.-....|.+|.+|+...++++| |++..++...
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~t~~~~~~~l~~aG-F~~~~~~~~~ 215 (243)
T 3bkw_A 144 TEHPIYMAPARPGWAIDAEGRRTWP-----IDRYLVEGPRKTD-WLAKGVVKHHRTVGTTLNALIRSG-FAIEHVEEFC 215 (243)
T ss_dssp EECHHHHCCSSCSCEECTTSCEEEE-----ECCTTCCEEECTT-HHHHSCCEEECCHHHHHHHHHHTT-CEEEEEEECC
T ss_pred eCCcccccCcCcceeecCCCceEEe-----ecccccccceeee-eccCceEEEeccHHHHHHHHHHcC-CEeeeeccCC
Confidence 743210000000 00000 000 0000000000000 000134567789999999999999 9998887654
No 70
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=98.08 E-value=0.00011 Score=64.29 Aligned_cols=93 Identities=16% Similarity=0.124 Sum_probs=56.5
Q ss_pred cCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEE
Q 040129 110 LFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIIT 189 (333)
Q Consensus 110 lfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~ 189 (333)
-++.+++|+++++.++||++. .++..+|+.=++-|+|||.++.+
T Consensus 97 ~~~~~~fD~V~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~~i~~ 140 (219)
T 3jwg_A 97 DKRFSGYDAATVIEVIEHLDE------------------------------------NRLQAFEKVLFEFTRPQTVIVST 140 (219)
T ss_dssp CGGGTTCSEEEEESCGGGCCH------------------------------------HHHHHHHHHHHTTTCCSEEEEEE
T ss_pred ccccCCCCEEEEHHHHHhCCH------------------------------------HHHHHHHHHHHHhhCCCEEEEEc
Confidence 345678999999999999632 24455677777899999966655
Q ss_pred ecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHH----HHHHhCCcEEEeEEEEeC
Q 040129 190 NPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFG----AVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 190 ~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~----~~ie~~G~F~I~~le~~~ 263 (333)
.....+. .|..+.. +.. ...-..+..+.+|++ .++++.| |+|+...+-+
T Consensus 141 ~~~~~~~----------~~~~~~~--------~~~------~~~~~~~~~~~~~l~~~~~~l~~~~G-f~v~~~~~g~ 193 (219)
T 3jwg_A 141 PNKEYNF----------HYGNLFE--------GNL------RHRDHRFEWTRKEFQTWAVKVAEKYG-YSVRFLQIGE 193 (219)
T ss_dssp EBGGGGG----------CCCCT-------------------GGGCCTTSBCHHHHHHHHHHHHHHHT-EEEEEEEESC
T ss_pred cchhhhh----------hhcccCc--------ccc------cccCceeeecHHHHHHHHHHHHHHCC-cEEEEEecCC
Confidence 4321110 0100000 100 011223445889999 7788889 9988776554
No 71
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=98.07 E-value=1.8e-05 Score=71.59 Aligned_cols=106 Identities=15% Similarity=0.196 Sum_probs=61.5
Q ss_pred CCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCccccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHK 108 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~ 108 (333)
++.-+|+|+||++|..+..+... -.+|+-.|+-..=....-+.++ ++ ..+-+.+..
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~-------------------~~~v~gvD~s~~~~~~a~~~~~---~~--~~~~~d~~~ 104 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADS-------------------FGTVEGLELSADMLAIARRRNP---DA--VLHHGDMRD 104 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTT-------------------SSEEEEEESCHHHHHHHHHHCT---TS--EEEECCTTT
T ss_pred CCCCcEEEeCCcCCHHHHHHHHc-------------------CCeEEEEECCHHHHHHHHhhCC---CC--EEEECChHH
Confidence 34579999999999988765421 0134444432111111111111 11 111222322
Q ss_pred ccCCCCceeEEEecc-ccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEE
Q 040129 109 RLFPEKFLHLVHVSY-ALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMII 187 (333)
Q Consensus 109 rlfP~~Sv~~~~Ss~-alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mv 187 (333)
-.+ ++++|+++++. ++||+.. ..|+..+|+.=++-|+|||+++
T Consensus 105 ~~~-~~~fD~v~~~~~~l~~~~~-----------------------------------~~~~~~~l~~~~~~L~pgG~l~ 148 (263)
T 3pfg_A 105 FSL-GRRFSAVTCMFSSIGHLAG-----------------------------------QAELDAALERFAAHVLPDGVVV 148 (263)
T ss_dssp CCC-SCCEEEEEECTTGGGGSCH-----------------------------------HHHHHHHHHHHHHTEEEEEEEE
T ss_pred CCc-cCCcCEEEEcCchhhhcCC-----------------------------------HHHHHHHHHHHHHhcCCCcEEE
Confidence 112 67899999998 9999532 1355667777779999999999
Q ss_pred EEecCCC
Q 040129 188 ITNPSIP 194 (333)
Q Consensus 188 l~~~gr~ 194 (333)
+.....+
T Consensus 149 i~~~~~~ 155 (263)
T 3pfg_A 149 VEPWWFP 155 (263)
T ss_dssp ECCCCCT
T ss_pred EEeccCh
Confidence 9854433
No 72
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=98.06 E-value=3.2e-05 Score=74.17 Aligned_cols=152 Identities=18% Similarity=0.160 Sum_probs=89.8
Q ss_pred CCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCccccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHK 108 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~ 108 (333)
++.-+|+|+||++|..+..+.. + -|..+++.-|+| +.-...+.+ .+ +..+.|.|+.
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~--------~---------~~~~~~~~~D~~--~~~~~a~~~---~~--v~~~~~d~~~ 263 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIIS--------K---------YPLIKGINFDLP--QVIENAPPL---SG--IEHVGGDMFA 263 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHH--------H---------CTTCEEEEEECH--HHHTTCCCC---TT--EEEEECCTTT
T ss_pred CCCCEEEEeCCCCcHHHHHHHH--------H---------CCCCeEEEeChH--HHHHhhhhc---CC--CEEEeCCccc
Confidence 3457999999999998866543 2 234667777874 222111111 12 4556778887
Q ss_pred ccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEE
Q 040129 109 RLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIII 188 (333)
Q Consensus 109 rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl 188 (333)
-+|. .|+++++.+||+++. .+...+|+.=.+-|+|||++++
T Consensus 264 -~~~~--~D~v~~~~~lh~~~d------------------------------------~~~~~~l~~~~~~L~pgG~l~i 304 (372)
T 1fp1_D 264 -SVPQ--GDAMILKAVCHNWSD------------------------------------EKCIEFLSNCHKALSPNGKVII 304 (372)
T ss_dssp -CCCC--EEEEEEESSGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred -CCCC--CCEEEEecccccCCH------------------------------------HHHHHHHHHHHHhcCCCCEEEE
Confidence 4676 899999999997432 1223456666688999999998
Q ss_pred EecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEE
Q 040129 189 TNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGL 261 (333)
Q Consensus 189 ~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~ 261 (333)
.-...++.... . ....+..+.+.+ -|+..| ...++.+|+++++++.| |++.+...
T Consensus 305 ~e~~~~~~~~~-~--~~~~~~~~~d~~-~~~~~~-------------~~~~t~~e~~~ll~~aG-f~~~~~~~ 359 (372)
T 1fp1_D 305 VEFILPEEPNT-S--EESKLVSTLDNL-MFITVG-------------GRERTEKQYEKLSKLSG-FSKFQVAC 359 (372)
T ss_dssp EEEEECSSCCS-S--HHHHHHHHHHHH-HHHHHS-------------CCCEEHHHHHHHHHHTT-CSEEEEEE
T ss_pred EEeccCCCCcc-c--hHHHHHHHhhHH-HHhccC-------------CccCCHHHHHHHHHHCC-CceEEEEE
Confidence 84333322110 0 000001111111 011111 12358999999999999 98776654
No 73
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=98.06 E-value=4.8e-05 Score=65.71 Aligned_cols=64 Identities=9% Similarity=0.055 Sum_probs=45.3
Q ss_pred hHHHHHHhhhhhhccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHH
Q 040129 168 DLERFLNNRAKEIVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAV 247 (333)
Q Consensus 168 D~~~FL~~Ra~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ 247 (333)
|...+|+.=.+-|+|||++++......+.. + ..| ....+.++.+.+|+++.
T Consensus 109 ~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~----------~-----------~~~--------~~~~~~~~~~~~~l~~~ 159 (202)
T 2kw5_A 109 LRQQLYPKVYQGLKPGGVFILEGFAPEQLQ----------Y-----------NTG--------GPKDLDLLPKLETLQSE 159 (202)
T ss_dssp HHHHHHHHHHTTCCSSEEEEEEEECTTTGG----------G-----------TSC--------CSSSGGGCCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEecccccc----------C-----------CCC--------CCCcceeecCHHHHHHH
Confidence 444556666788999999999987654310 0 011 11245788999999999
Q ss_pred HHhCCcEEEeEEEEeC
Q 040129 248 VERNGNFRIEVMGLTN 263 (333)
Q Consensus 248 ie~~G~F~I~~le~~~ 263 (333)
++ | |+|..++...
T Consensus 160 l~--G-f~v~~~~~~~ 172 (202)
T 2kw5_A 160 LP--S-LNWLIANNLE 172 (202)
T ss_dssp CS--S-SCEEEEEEEE
T ss_pred hc--C-ceEEEEEEEE
Confidence 99 8 9999988665
No 74
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=98.06 E-value=3.7e-05 Score=67.16 Aligned_cols=95 Identities=18% Similarity=0.276 Sum_probs=61.9
Q ss_pred CCcEEEEeecCCCCcccHHHHH------------HHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCcccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQ------------DLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIH 96 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~------------~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~ 96 (333)
....+|+|+||++|..+..+.. ..++..+++... .+.+.++..|..
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~------~~~~~~~~~d~~---------------- 107 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKR------WSHISWAATDIL---------------- 107 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTT------CSSEEEEECCTT----------------
T ss_pred CCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhccc------CCCeEEEEcchh----------------
Confidence 4568999999999998877652 233333332211 123344444332
Q ss_pred ceeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhh
Q 040129 97 FFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNR 176 (333)
Q Consensus 97 ~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~R 176 (333)
. +.|++++|+++++.++||+... .++..+|+.=
T Consensus 108 -----------~-~~~~~~fD~v~~~~~l~~~~~~-----------------------------------~~~~~~l~~~ 140 (216)
T 3ofk_A 108 -----------Q-FSTAELFDLIVVAEVLYYLEDM-----------------------------------TQMRTAIDNM 140 (216)
T ss_dssp -----------T-CCCSCCEEEEEEESCGGGSSSH-----------------------------------HHHHHHHHHH
T ss_pred -----------h-CCCCCCccEEEEccHHHhCCCH-----------------------------------HHHHHHHHHH
Confidence 1 2267889999999999996531 2344556666
Q ss_pred hhhhccCceEEEEecC
Q 040129 177 AKEIVPGGMIIITNPS 192 (333)
Q Consensus 177 a~EL~~GG~mvl~~~g 192 (333)
++-|+|||.+++....
T Consensus 141 ~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 141 VKMLAPGGHLVFGSAR 156 (216)
T ss_dssp HHTEEEEEEEEEEEEC
T ss_pred HHHcCCCCEEEEEecC
Confidence 7899999999997643
No 75
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=98.05 E-value=1e-05 Score=68.80 Aligned_cols=119 Identities=15% Similarity=0.163 Sum_probs=74.4
Q ss_pred CcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCcccccc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKR 109 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~r 109 (333)
..-+|+|+||+... +-+-...++..+++... .+++...|.-. + + | +
T Consensus 12 ~g~~vL~~~~g~v~--vD~s~~ml~~a~~~~~~--------~~~~~~~d~~~-----~----~-------------~--~ 57 (176)
T 2ld4_A 12 AGQFVAVVWDKSSP--VEALKGLVDKLQALTGN--------EGRVSVENIKQ-----L----L-------------Q--S 57 (176)
T ss_dssp TTSEEEEEECTTSC--HHHHHHHHHHHHHHTTT--------TSEEEEEEGGG-----G----G-------------G--G
T ss_pred CCCEEEEecCCcee--eeCCHHHHHHHHHhccc--------CcEEEEechhc-----C----c-------------c--c
Confidence 34689999998743 55566666666655321 24444443321 1 0 0 0
Q ss_pred cCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEE
Q 040129 110 LFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIIT 189 (333)
Q Consensus 110 lfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~ 189 (333)
-+|++++|+++|+.++||+..-+ ..+|+.=++-|+|||++++.
T Consensus 58 ~~~~~~fD~V~~~~~l~~~~~~~-------------------------------------~~~l~~~~r~LkpgG~l~~~ 100 (176)
T 2ld4_A 58 AHKESSFDIILSGLVPGSTTLHS-------------------------------------AEILAEIARILRPGGCLFLK 100 (176)
T ss_dssp CCCSSCEEEEEECCSTTCCCCCC-------------------------------------HHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCCCEeEEEECChhhhcccCH-------------------------------------HHHHHHHHHHCCCCEEEEEE
Confidence 14788999999999999972111 12344555889999999995
Q ss_pred ecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEe
Q 040129 190 NPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIE 257 (333)
Q Consensus 190 ~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~ 257 (333)
-..... .+ .+.|.++.+|+...+++.| | |+
T Consensus 101 ~~~~~~-------------------------~~-----------~~~~~~~~~~~~~~l~~aG-f-i~ 130 (176)
T 2ld4_A 101 EPVETA-------------------------VD-----------NNSKVKTASKLCSALTLSG-L-VE 130 (176)
T ss_dssp EEEESS-------------------------SC-----------SSSSSCCHHHHHHHHHHTT-C-EE
T ss_pred cccccc-------------------------cc-----------cccccCCHHHHHHHHHHCC-C-cE
Confidence 321100 00 0566778899999999999 8 76
No 76
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=98.04 E-value=4e-05 Score=68.32 Aligned_cols=151 Identities=13% Similarity=0.028 Sum_probs=85.4
Q ss_pred CCcEEEEeecCCCCcccHHHHHH------------HHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCcccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQD------------LIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIH 96 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~------------ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~ 96 (333)
....+|+|+||++|.++..+... .++..+++. ....+.+...|+-.-++..-|.
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~~~d~~~~~~~~~~~------- 120 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKEN-------TAANISYRLLDGLVPEQAAQIH------- 120 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHS-------CCTTEEEEECCTTCHHHHHHHH-------
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhC-------cccCceEEECcccccccccccc-------
Confidence 33468999999999999887642 233333322 1124555555554433322211
Q ss_pred ceeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhh
Q 040129 97 FFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNR 176 (333)
Q Consensus 97 ~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~R 176 (333)
+..++|+++++.++||+.. .|...+|+.=
T Consensus 121 ---------------~~~~~d~v~~~~~~~~~~~------------------------------------~~~~~~l~~~ 149 (245)
T 3ggd_A 121 ---------------SEIGDANIYMRTGFHHIPV------------------------------------EKRELLGQSL 149 (245)
T ss_dssp ---------------HHHCSCEEEEESSSTTSCG------------------------------------GGHHHHHHHH
T ss_pred ---------------cccCccEEEEcchhhcCCH------------------------------------HHHHHHHHHH
Confidence 1123899999999999632 2334455555
Q ss_pred hhhhccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHh---hhhcCCcCcccCCHHHHHHHHHhCCc
Q 040129 177 AKEIVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEA---QVDSFNLPIYACPPGEFGAVVERNGN 253 (333)
Q Consensus 177 a~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~---~~d~fn~P~y~ps~~E~~~~ie~~G~ 253 (333)
.+-|+|||++++.-.+..+ +..+..+... ..| .... .+..-..|. ..+.+|+.+.+ .|
T Consensus 150 ~~~LkpgG~l~i~~~~~~~---------~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~--aG- 210 (245)
T 3ggd_A 150 RILLGKQGAMYLIELGTGC---------IDFFNSLLEK-----YGQ-LPYELLLVMEHGIRPG-IFTAEDIELYF--PD- 210 (245)
T ss_dssp HHHHTTTCEEEEEEECTTH---------HHHHHHHHHH-----HSS-CCHHHHHHHTTTCCCC-CCCHHHHHHHC--TT-
T ss_pred HHHcCCCCEEEEEeCCccc---------cHHHHHHHhC-----CCC-CchhhhhccccCCCCC-ccCHHHHHHHh--CC-
Confidence 6889999998887665432 1122222111 011 1111 011122343 46899999999 88
Q ss_pred EEEeEEEEeC
Q 040129 254 FRIEVMGLTN 263 (333)
Q Consensus 254 F~I~~le~~~ 263 (333)
|++..-....
T Consensus 211 f~~~~~~~~~ 220 (245)
T 3ggd_A 211 FEILSQGEGL 220 (245)
T ss_dssp EEEEEEECCB
T ss_pred CEEEeccccc
Confidence 9987766543
No 77
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=98.03 E-value=4.6e-05 Score=72.51 Aligned_cols=157 Identities=14% Similarity=0.163 Sum_probs=93.0
Q ss_pred CCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhh-cCCccc-cceeeccCccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFT-SLPQEI-HFFVAGVPGSF 106 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~-~l~~~~-~~f~~~vpgSF 106 (333)
++.-+|+|+||++|..+..+... .|..+++.-|+|. .-...+ .+.... +-=+..+.|+|
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~-----------------~p~~~~~~~D~~~--~~~~a~~~~~~~~~~~~v~~~~~d~ 249 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKH-----------------FPELDSTILNLPG--AIDLVNENAAEKGVADRMRGIAVDI 249 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHH-----------------CTTCEEEEEECGG--GHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred CCCCEEEEECCcccHHHHHHHHH-----------------CCCCeEEEEecHH--HHHHHHHHHHhcCCCCCEEEEeCcc
Confidence 34579999999999988665532 2346778888832 222222 111000 00033456777
Q ss_pred ccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceE
Q 040129 107 HKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMI 186 (333)
Q Consensus 107 y~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~m 186 (333)
..--+|+. |+++++..+|.+ |. .+...+|+.=.+-|+|||++
T Consensus 250 ~~~~~~~~--D~v~~~~vlh~~---~d---------------------------------~~~~~~l~~~~~~L~pgG~l 291 (359)
T 1x19_A 250 YKESYPEA--DAVLFCRILYSA---NE---------------------------------QLSTIMCKKAFDAMRSGGRL 291 (359)
T ss_dssp TTSCCCCC--SEEEEESCGGGS---CH---------------------------------HHHHHHHHHHHTTCCTTCEE
T ss_pred ccCCCCCC--CEEEEechhccC---CH---------------------------------HHHHHHHHHHHHhcCCCCEE
Confidence 76656665 999999999852 21 23455677777889999999
Q ss_pred EEEecCCCCCCCCccchhhHHHHHHHHHHHHHHh-ccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEe
Q 040129 187 IITNPSIPDGMPFSEIANGLMYNCMGTILYDMVK-VGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLT 262 (333)
Q Consensus 187 vl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~-eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~ 262 (333)
++.-...++.. .. .+..+. .|.. .| .-.....+++.+|++++++++| |++.+...+
T Consensus 292 ~i~e~~~~~~~--~~-----~~~~~~----~~~~~~~--------~g~~~~~~~t~~e~~~ll~~aG-f~~v~~~~~ 348 (359)
T 1x19_A 292 LILDMVIDDPE--NP-----NFDYLS----HYILGAG--------MPFSVLGFKEQARYKEILESLG-YKDVTMVRK 348 (359)
T ss_dssp EEEEECCCCTT--SC-----CHHHHH----HHGGGGG--------SSCCCCCCCCGGGHHHHHHHHT-CEEEEEEEE
T ss_pred EEEecccCCCC--Cc-----hHHHHH----HHHHhcC--------CCCcccCCCCHHHHHHHHHHCC-CceEEEEec
Confidence 77654443321 11 111111 2211 11 0011234589999999999999 988776644
No 78
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=98.01 E-value=3.1e-05 Score=66.29 Aligned_cols=127 Identities=18% Similarity=0.221 Sum_probs=76.0
Q ss_pred cEEEEeecCCCCcccHHHHH------------HHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccce
Q 040129 31 TIRLADCGCAVGPNTFNAMQ------------DLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFF 98 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~------------~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f 98 (333)
.-+|+|+||++|..+..+.+ ..++..++.....+ .+.+++...|.
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~------------------- 89 (199)
T 2xvm_A 33 PGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIEN----LDNLHTRVVDL------------------- 89 (199)
T ss_dssp SCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT----CTTEEEEECCG-------------------
T ss_pred CCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCC----CCCcEEEEcch-------------------
Confidence 35999999999999887652 23333333332211 11233333332
Q ss_pred eeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhh
Q 040129 99 VAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAK 178 (333)
Q Consensus 99 ~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~ 178 (333)
..--+ ++++|+++++.++||++. .|...+|+.=.+
T Consensus 90 --------~~~~~-~~~~D~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~ 124 (199)
T 2xvm_A 90 --------NNLTF-DRQYDFILSTVVLMFLEA------------------------------------KTIPGLIANMQR 124 (199)
T ss_dssp --------GGCCC-CCCEEEEEEESCGGGSCG------------------------------------GGHHHHHHHHHH
T ss_pred --------hhCCC-CCCceEEEEcchhhhCCH------------------------------------HHHHHHHHHHHH
Confidence 22122 678999999999999642 133445666668
Q ss_pred hhccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeE
Q 040129 179 EIVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEV 258 (333)
Q Consensus 179 EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~ 258 (333)
-|+|||++++......+..+ .+ ....+..+.+|+++.++. |++..
T Consensus 125 ~L~~gG~l~~~~~~~~~~~~----------------------~~----------~~~~~~~~~~~l~~~~~~---f~~~~ 169 (199)
T 2xvm_A 125 CTKPGGYNLIVAAMDTADYP----------------------CT----------VGFPFAFKEGELRRYYEG---WERVK 169 (199)
T ss_dssp TEEEEEEEEEEEEBCCSSSC----------------------CC----------SCCSCCBCTTHHHHHTTT---SEEEE
T ss_pred hcCCCeEEEEEEeeccCCcC----------------------CC----------CCCCCccCHHHHHHHhcC---CeEEE
Confidence 89999998876433222110 00 011245688999999875 88877
Q ss_pred EE
Q 040129 259 MG 260 (333)
Q Consensus 259 le 260 (333)
.+
T Consensus 170 ~~ 171 (199)
T 2xvm_A 170 YN 171 (199)
T ss_dssp EE
T ss_pred ec
Confidence 65
No 79
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=98.00 E-value=6.1e-05 Score=71.43 Aligned_cols=155 Identities=19% Similarity=0.212 Sum_probs=90.1
Q ss_pred CcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhh-cCCccc-cceeeccCcccc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFT-SLPQEI-HFFVAGVPGSFH 107 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~-~l~~~~-~~f~~~vpgSFy 107 (333)
+..+|+|+||++|..+..+... .|..+++.-|+| +.-...+ .+.... .-=+.-+.+++.
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~-----------------~~~~~~~~~D~~--~~~~~a~~~~~~~~~~~~v~~~~~d~~ 243 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARR-----------------APHVSATVLEMA--GTVDTARSYLKDEGLSDRVDVVEGDFF 243 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHH-----------------CTTCEEEEEECT--THHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred cCcEEEEeCCcCcHHHHHHHHh-----------------CCCCEEEEecCH--HHHHHHHHHHHhcCCCCceEEEeCCCC
Confidence 3579999999999888665431 134677778873 2222222 111100 001233456666
Q ss_pred cccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEE
Q 040129 108 KRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMII 187 (333)
Q Consensus 108 ~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mv 187 (333)
. -+|.+ .|+++++..+|.+ |. .+...+|+.=.+-|+|||+++
T Consensus 244 ~-~~~~~-~D~v~~~~vl~~~---~~---------------------------------~~~~~~l~~~~~~L~pgG~l~ 285 (360)
T 1tw3_A 244 E-PLPRK-ADAIILSFVLLNW---PD---------------------------------HDAVRILTRCAEALEPGGRIL 285 (360)
T ss_dssp S-CCSSC-EEEEEEESCGGGS---CH---------------------------------HHHHHHHHHHHHTEEEEEEEE
T ss_pred C-CCCCC-ccEEEEcccccCC---CH---------------------------------HHHHHHHHHHHHhcCCCcEEE
Confidence 5 35654 9999999999863 21 123345555568899999999
Q ss_pred EEecC-CCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeC
Q 040129 188 ITNPS-IPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 188 l~~~g-r~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 263 (333)
+.-.. .++... . .....++. . -|+..| ...++.+|+++++++.| |++.++....
T Consensus 286 i~e~~~~~~~~~--~-~~~~~~~~----~-~~~~~~-------------~~~~t~~e~~~ll~~aG-f~~~~~~~~~ 340 (360)
T 1tw3_A 286 IHERDDLHENSF--N-EQFTELDL----R-MLVFLG-------------GALRTREKWDGLAASAG-LVVEEVRQLP 340 (360)
T ss_dssp EEECCBCGGGCC--S-HHHHHHHH----H-HHHHHS-------------CCCCBHHHHHHHHHHTT-EEEEEEEEEE
T ss_pred EEEEeccCCCCC--c-chhhhccH----H-HhhhcC-------------CcCCCHHHHHHHHHHCC-CeEEEEEeCC
Confidence 87544 322211 0 11111111 1 111111 13579999999999999 9988877554
No 80
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=97.99 E-value=1.2e-05 Score=70.44 Aligned_cols=111 Identities=18% Similarity=0.225 Sum_probs=71.5
Q ss_pred cEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCccccccc
Q 040129 31 TIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKRL 110 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~rl 110 (333)
..+|+|+||++|..+..+. .+|+..|.... .+ . | +.+.+..--
T Consensus 68 ~~~vLDiG~G~G~~~~~l~----------------------~~v~~~D~s~~-------~~----~-~---~~~d~~~~~ 110 (215)
T 2zfu_A 68 SLVVADFGCGDCRLASSIR----------------------NPVHCFDLASL-------DP----R-V---TVCDMAQVP 110 (215)
T ss_dssp TSCEEEETCTTCHHHHHCC----------------------SCEEEEESSCS-------ST----T-E---EESCTTSCS
T ss_pred CCeEEEECCcCCHHHHHhh----------------------ccEEEEeCCCC-------Cc----e-E---EEeccccCC
Confidence 4689999999999775541 12444444433 00 1 1 112222223
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEe
Q 040129 111 FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
+|++++|+++++.++|| + |...+|+.=++-|+|||++++.-
T Consensus 111 ~~~~~fD~v~~~~~l~~----~-----------------------------------~~~~~l~~~~~~L~~gG~l~i~~ 151 (215)
T 2zfu_A 111 LEDESVDVAVFCLSLMG----T-----------------------------------NIRDFLEEANRVLKPGGLLKVAE 151 (215)
T ss_dssp CCTTCEEEEEEESCCCS----S-----------------------------------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCEeEEEEehhccc----c-----------------------------------CHHHHHHHHHHhCCCCeEEEEEE
Confidence 67889999999999996 1 11223444457799999999974
Q ss_pred cCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEE
Q 040129 191 PSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGL 261 (333)
Q Consensus 191 ~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~ 261 (333)
... .+++.+++...+++.| |++.....
T Consensus 152 ~~~-------------------------------------------~~~~~~~~~~~l~~~G-f~~~~~~~ 178 (215)
T 2zfu_A 152 VSS-------------------------------------------RFEDVRTFLRAVTKLG-FKIVSKDL 178 (215)
T ss_dssp CGG-------------------------------------------GCSCHHHHHHHHHHTT-EEEEEEEC
T ss_pred cCC-------------------------------------------CCCCHHHHHHHHHHCC-CEEEEEec
Confidence 221 0128999999999999 98877553
No 81
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=97.99 E-value=4.2e-05 Score=72.84 Aligned_cols=150 Identities=18% Similarity=0.138 Sum_probs=88.8
Q ss_pred cEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCccccccc
Q 040129 31 TIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKRL 110 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~rl 110 (333)
.-+|+|+||++|..+..+.. + .|..++..-|+| ..- .......+ +..+.|.|+. -
T Consensus 194 ~~~vlDvG~G~G~~~~~l~~--------~---------~p~~~~~~~D~~--~~~---~~a~~~~~--v~~~~~d~~~-~ 248 (358)
T 1zg3_A 194 LESLVDVGGGTGGVTKLIHE--------I---------FPHLKCTVFDQP--QVV---GNLTGNEN--LNFVGGDMFK-S 248 (358)
T ss_dssp CSEEEEETCTTSHHHHHHHH--------H---------CTTSEEEEEECH--HHH---SSCCCCSS--EEEEECCTTT-C
T ss_pred CCEEEEECCCcCHHHHHHHH--------H---------CCCCeEEEeccH--HHH---hhcccCCC--cEEEeCccCC-C
Confidence 46899999999988766543 2 234567777875 222 22211122 5556788887 4
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhcc---CceEE
Q 040129 111 FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVP---GGMII 187 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~---GG~mv 187 (333)
+| +.|+++++..||+++. .+...+|+.=.+-|+| ||+++
T Consensus 249 ~~--~~D~v~~~~vlh~~~d------------------------------------~~~~~~l~~~~~~L~p~~~gG~l~ 290 (358)
T 1zg3_A 249 IP--SADAVLLKWVLHDWND------------------------------------EQSLKILKNSKEAISHKGKDGKVI 290 (358)
T ss_dssp CC--CCSEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHTGGGGGGCEEE
T ss_pred CC--CceEEEEcccccCCCH------------------------------------HHHHHHHHHHHHhCCCCCCCcEEE
Confidence 56 4899999999997432 1223456666688999 99999
Q ss_pred EEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEE
Q 040129 188 ITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGL 261 (333)
Q Consensus 188 l~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~ 261 (333)
+.-...++...... .. ....+.+.. -|+..| -..++.+|+++++++.| |++.++..
T Consensus 291 i~e~~~~~~~~~~~--~~-~~~~~~d~~-~~~~~~-------------g~~~t~~e~~~ll~~aG-f~~~~~~~ 346 (358)
T 1zg3_A 291 IIDISIDETSDDRG--LT-ELQLDYDLV-MLTMFL-------------GKERTKQEWEKLIYDAG-FSSYKITP 346 (358)
T ss_dssp EEECEECTTCSCHH--HH-HHHHHHHHH-HHHHHS-------------CCCEEHHHHHHHHHHTT-CCEEEEEE
T ss_pred EEEeccCCCCccch--hh-hHHHhhCHH-HhccCC-------------CCCCCHHHHHHHHHHcC-CCeeEEEe
Confidence 87443332211000 00 011111110 111111 12469999999999999 98776654
No 82
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=97.96 E-value=0.00024 Score=65.53 Aligned_cols=87 Identities=15% Similarity=0.135 Sum_probs=55.9
Q ss_pred cCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEE
Q 040129 110 LFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIIT 189 (333)
Q Consensus 110 lfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~ 189 (333)
.+|-++.|+++++.+|||++.- +...+|+.=++-|+|||+|++.
T Consensus 152 ~~d~~~~d~v~~~~vlh~~~d~------------------------------------~~~~~l~~~~~~L~pGG~l~i~ 195 (274)
T 2qe6_A 152 MIDFSRPAAIMLVGMLHYLSPD------------------------------------VVDRVVGAYRDALAPGSYLFMT 195 (274)
T ss_dssp HCCTTSCCEEEETTTGGGSCTT------------------------------------THHHHHHHHHHHSCTTCEEEEE
T ss_pred cCCCCCCEEEEEechhhhCCcH------------------------------------HHHHHHHHHHHhCCCCcEEEEE
Confidence 3565689999999999997542 1222344445789999999999
Q ss_pred ecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeE
Q 040129 190 NPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEV 258 (333)
Q Consensus 190 ~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~ 258 (333)
....+. + . .+..+...+. ..| .|+++++.+|+++.+ .| |++..
T Consensus 196 ~~~~~~--~--~-----~~~~~~~~~~---~~~-----------~~~~~~s~~ei~~~l--~G-~~l~~ 238 (274)
T 2qe6_A 196 SLVDTG--L--P-----AQQKLARITR---ENL-----------GEGWARTPEEIERQF--GD-FELVE 238 (274)
T ss_dssp EEBCSS--C--H-----HHHHHHHHHH---HHH-----------SCCCCBCHHHHHHTT--TT-CEECT
T ss_pred EecCcc--h--H-----HHHHHHHHHH---hcC-----------CCCccCCHHHHHHHh--CC-CeEcc
Confidence 876532 1 0 1122222221 112 367789999999999 47 87654
No 83
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=97.92 E-value=9.7e-05 Score=70.13 Aligned_cols=150 Identities=17% Similarity=0.200 Sum_probs=89.2
Q ss_pred CcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCcccccc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKR 109 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~r 109 (333)
+.-+|+|+||++|..+..+.+ + .|..++..-|+|. .........+ +..+.|.|+.
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~--------~---------~p~~~~~~~D~~~-----~~~~a~~~~~--v~~~~~d~~~- 242 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICE--------T---------FPKLKCIVFDRPQ-----VVENLSGSNN--LTYVGGDMFT- 242 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHH--------H---------CTTCEEEEEECHH-----HHTTCCCBTT--EEEEECCTTT-
T ss_pred cCceEEEeCCCccHHHHHHHH--------H---------CCCCeEEEeeCHH-----HHhhcccCCC--cEEEeccccC-
Confidence 346999999999987755442 2 2446788888742 2222211122 4556788877
Q ss_pred cCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhcc---CceE
Q 040129 110 LFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVP---GGMI 186 (333)
Q Consensus 110 lfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~---GG~m 186 (333)
-+|. .|+++++.+||.++. .+...+|+.=.+-|+| ||++
T Consensus 243 ~~p~--~D~v~~~~~lh~~~d------------------------------------~~~~~~l~~~~~~L~p~~~gG~l 284 (352)
T 1fp2_A 243 SIPN--ADAVLLKYILHNWTD------------------------------------KDCLRILKKCKEAVTNDGKRGKV 284 (352)
T ss_dssp CCCC--CSEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHHSGGGCCCEE
T ss_pred CCCC--ccEEEeehhhccCCH------------------------------------HHHHHHHHHHHHhCCCCCCCcEE
Confidence 4564 999999999995322 1223445655688999 9999
Q ss_pred EEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEE
Q 040129 187 IITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGL 261 (333)
Q Consensus 187 vl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~ 261 (333)
++.-...++.... ..... ...+.++.-- . ++ -..++.+|+++++++.| |++.++..
T Consensus 285 ~i~e~~~~~~~~~-----~~~~~--~~~~~d~~~~--------~-~~--g~~~t~~e~~~ll~~aG-f~~~~~~~ 340 (352)
T 1fp2_A 285 TIIDMVIDKKKDE-----NQVTQ--IKLLMDVNMA--------C-LN--GKERNEEEWKKLFIEAG-FQHYKISP 340 (352)
T ss_dssp EEEECEECTTTSC-----HHHHH--HHHHHHHHGG--------G-GT--CCCEEHHHHHHHHHHTT-CCEEEEEE
T ss_pred EEEEeecCCCCCc-----cchhh--hHhhccHHHH--------h-cc--CCCCCHHHHHHHHHHCC-CCeeEEEe
Confidence 9885544332210 00011 1112222100 0 11 23468999999999999 88766553
No 84
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=97.91 E-value=3.4e-05 Score=70.91 Aligned_cols=102 Identities=15% Similarity=0.267 Sum_probs=59.8
Q ss_pred cEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCccccccc
Q 040129 31 TIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKRL 110 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~rl 110 (333)
.-+|+|+||++|..+..+... . .+|+-.|.-. ..| +......++ ..+-+++-.--
T Consensus 40 ~~~vLDvGcGtG~~~~~l~~~--------~-----------~~v~gvD~s~---~ml-~~a~~~~~v--~~~~~~~e~~~ 94 (257)
T 4hg2_A 40 RGDALDCGCGSGQASLGLAEF--------F-----------ERVHAVDPGE---AQI-RQALRHPRV--TYAVAPAEDTG 94 (257)
T ss_dssp SSEEEEESCTTTTTHHHHHTT--------C-----------SEEEEEESCH---HHH-HTCCCCTTE--EEEECCTTCCC
T ss_pred CCCEEEEcCCCCHHHHHHHHh--------C-----------CEEEEEeCcH---Hhh-hhhhhcCCc--eeehhhhhhhc
Confidence 348999999999988765421 0 1244444321 001 111111121 11223344445
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEe
Q 040129 111 FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
+|++|+|+|+|+.++||+. |+ .||+.=++-|+|||+|++..
T Consensus 95 ~~~~sfD~v~~~~~~h~~~--~~-------------------------------------~~~~e~~rvLkpgG~l~~~~ 135 (257)
T 4hg2_A 95 LPPASVDVAIAAQAMHWFD--LD-------------------------------------RFWAELRRVARPGAVFAAVT 135 (257)
T ss_dssp CCSSCEEEEEECSCCTTCC--HH-------------------------------------HHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCcccEEEEeeehhHhh--HH-------------------------------------HHHHHHHHHcCCCCEEEEEE
Confidence 8999999999999999963 11 12333346699999999988
Q ss_pred cCCCCC
Q 040129 191 PSIPDG 196 (333)
Q Consensus 191 ~gr~~~ 196 (333)
.+....
T Consensus 136 ~~~~~~ 141 (257)
T 4hg2_A 136 YGLTRV 141 (257)
T ss_dssp ECCCBC
T ss_pred CCCCCC
Confidence 776543
No 85
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=97.91 E-value=8.3e-05 Score=64.28 Aligned_cols=49 Identities=16% Similarity=0.342 Sum_probs=38.0
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEe
Q 040129 111 FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
+|++++|+++++.++|+++ . .|...+|+.=++-|+|||++++..
T Consensus 85 ~~~~~fD~v~~~~~l~~~~---~---------------------------------~~~~~~l~~~~~~LkpgG~l~~~~ 128 (209)
T 2p8j_A 85 FKDESMSFVYSYGTIFHMR---K---------------------------------NDVKEAIDEIKRVLKPGGLACINF 128 (209)
T ss_dssp SCTTCEEEEEECSCGGGSC---H---------------------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCceeEEEEcChHHhCC---H---------------------------------HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 5778999999999999853 1 244455666678899999999998
Q ss_pred cCCCC
Q 040129 191 PSIPD 195 (333)
Q Consensus 191 ~gr~~ 195 (333)
....+
T Consensus 129 ~~~~~ 133 (209)
T 2p8j_A 129 LTTKD 133 (209)
T ss_dssp EETTS
T ss_pred ecccc
Confidence 77654
No 86
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=97.89 E-value=0.00017 Score=69.90 Aligned_cols=147 Identities=12% Similarity=0.165 Sum_probs=86.4
Q ss_pred CCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhc-CCccccceeeccCcccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTS-LPQEIHFFVAGVPGSFH 107 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~-l~~~~~~f~~~vpgSFy 107 (333)
+...+|+|+||++|..+..+... -.+|+--|...+=....-+. ++.....|..+.. -
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~~~-------------------g~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~---~ 163 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQEA-------------------GVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATA---D 163 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHHHT-------------------TCEEEEECCCHHHHHHHHTTTCCEECSCCSHHHH---H
T ss_pred CCCCEEEEecCCCCHHHHHHHHc-------------------CCcEEEECCCHHHHHHHHHcCCCcceeeechhhH---h
Confidence 34579999999999977655421 12455666533211111111 0100011111110 0
Q ss_pred cccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEE
Q 040129 108 KRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMII 187 (333)
Q Consensus 108 ~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mv 187 (333)
.--+|++++|+++|+.+|||+.. ...||+.=++-|+|||+|+
T Consensus 164 ~l~~~~~~fD~I~~~~vl~h~~d--------------------------------------~~~~l~~~~r~LkpgG~l~ 205 (416)
T 4e2x_A 164 DVRRTEGPANVIYAANTLCHIPY--------------------------------------VQSVLEGVDALLAPDGVFV 205 (416)
T ss_dssp HHHHHHCCEEEEEEESCGGGCTT--------------------------------------HHHHHHHHHHHEEEEEEEE
T ss_pred hcccCCCCEEEEEECChHHhcCC--------------------------------------HHHHHHHHHHHcCCCeEEE
Confidence 01256789999999999999632 2334666668899999999
Q ss_pred EEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhc-CCcCcccCCHHHHHHHHHhCCcEEEeEEEEeC
Q 040129 188 ITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDS-FNLPIYACPPGEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 188 l~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~-fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 263 (333)
+...... ..+. .. ..+. +.-.+.+.+.++++.++++.| |++..++.+.
T Consensus 206 i~~~~~~--------------~~~~--------~~-----~~~~~~~~~~~~~s~~~l~~ll~~aG-f~~~~~~~~~ 254 (416)
T 4e2x_A 206 FEDPYLG--------------DIVA--------KT-----SFDQIFDEHFFLFSATSVQGMAQRCG-FELVDVQRLP 254 (416)
T ss_dssp EEEECHH--------------HHHH--------HT-----CGGGCSTTCCEECCHHHHHHHHHHTT-EEEEEEEEEC
T ss_pred EEeCChH--------------Hhhh--------hc-----chhhhhhhhhhcCCHHHHHHHHHHcC-CEEEEEEEcc
Confidence 9764311 1111 01 1122 223456689999999999999 9998888764
No 87
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=97.82 E-value=0.00023 Score=66.32 Aligned_cols=59 Identities=10% Similarity=0.137 Sum_probs=38.2
Q ss_pred HHhhhhhhccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCC
Q 040129 173 LNNRAKEIVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNG 252 (333)
Q Consensus 173 L~~Ra~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G 252 (333)
|+.=.+-|+|||+|++.....+. .+ ...+.+.+.++ .-| .|+.++|.+|+.+.++ |
T Consensus 183 l~~l~~~L~PGG~Lvls~~~~d~-~p-------~~~~~~~~~~~---~~g-----------~p~~~rs~~ei~~~f~--G 238 (277)
T 3giw_A 183 VRRLLEPLPSGSYLAMSIGTAEF-AP-------QEVGRVAREYA---ARN-----------MPMRLRTHAEAEEFFE--G 238 (277)
T ss_dssp HHHHHTTSCTTCEEEEEEECCTT-SH-------HHHHHHHHHHH---HTT-----------CCCCCCCHHHHHHTTT--T
T ss_pred HHHHHHhCCCCcEEEEEeccCCC-CH-------HHHHHHHHHHH---hcC-----------CCCccCCHHHHHHHhC--C
Confidence 33444889999999999877542 11 11223332222 223 5889999999999995 7
Q ss_pred cEEE
Q 040129 253 NFRI 256 (333)
Q Consensus 253 ~F~I 256 (333)
|++
T Consensus 239 -lel 241 (277)
T 3giw_A 239 -LEL 241 (277)
T ss_dssp -SEE
T ss_pred -Ccc
Confidence 774
No 88
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=97.81 E-value=0.0002 Score=62.83 Aligned_cols=106 Identities=14% Similarity=0.164 Sum_probs=56.7
Q ss_pred ccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEE
Q 040129 109 RLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIII 188 (333)
Q Consensus 109 rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl 188 (333)
+.+|++++|+++++...+|....... .+ -+...||+.=++-|+|||.+++
T Consensus 105 ~~~~~~~~D~i~~~~~~~~~~~~~~~-----------~~-------------------~~~~~~l~~~~~~LkpgG~l~~ 154 (214)
T 1yzh_A 105 DYFEDGEIDRLYLNFSDPWPKKRHEK-----------RR-------------------LTYKTFLDTFKRILPENGEIHF 154 (214)
T ss_dssp GTSCTTCCSEEEEESCCCCCSGGGGG-----------GS-------------------TTSHHHHHHHHHHSCTTCEEEE
T ss_pred hhcCCCCCCEEEEECCCCccccchhh-----------hc-------------------cCCHHHHHHHHHHcCCCcEEEE
Confidence 34788899999999877774311000 00 0123445555678999999998
Q ss_pred EecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhh-hhcCCcCcccCCHHHHHHHHHhCCcEEEeEEE
Q 040129 189 TNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQ-VDSFNLPIYACPPGEFGAVVERNGNFRIEVMG 260 (333)
Q Consensus 189 ~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~-~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le 260 (333)
.... . +....++..|.+.|.-..+. .|-+..++......+|+....+.| +.|-++.
T Consensus 155 ~~~~------------~---~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~t~~e~~~~~~g-~~i~~~~ 211 (214)
T 1yzh_A 155 KTDN------------R---GLFEYSLVSFSQYGMKLNGVWLDLHASDFEGNVMTEYEQKFSNKG-QVIYRVE 211 (214)
T ss_dssp EESC------------H---HHHHHHHHHHHHHTCEEEEEESSGGGSCCCCCCCCHHHHHTGGGC-CCCEEEE
T ss_pred EeCC------------H---HHHHHHHHHHHHCCCeeeeccccccccCCCCCCCcHHHHHHHHCC-CCeEEEE
Confidence 6521 0 11233333444446422111 122222333344567888888888 5665544
No 89
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=97.80 E-value=0.0001 Score=68.26 Aligned_cols=48 Identities=17% Similarity=0.319 Sum_probs=36.3
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEe
Q 040129 111 FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
++.+++|+|+|...+||+.- ..-..++..+|+.=.+-|+|||+|++..
T Consensus 173 ~~~~~fD~I~~~~vl~~ihl--------------------------------~~~~~~~~~~l~~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 173 AQTPEYDVVLCLSLTKWVHL--------------------------------NWGDEGLKRMFRRIYRHLRPGGILVLEP 220 (292)
T ss_dssp TCCCCEEEEEEESCHHHHHH--------------------------------HHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ccCCCcCEEEEChHHHHhhh--------------------------------cCCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 57889999999999999421 0112456667777778999999999964
No 90
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=97.78 E-value=0.00075 Score=61.84 Aligned_cols=105 Identities=16% Similarity=0.175 Sum_probs=60.1
Q ss_pred CCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHh---hcCCccccceeeccCcc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLF---TSLPQEIHFFVAGVPGS 105 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF---~~l~~~~~~f~~~vpgS 105 (333)
.+..+|+|+||++|..+..+.+. + ++..+|+-.|+-..--...= ...+. + +..+-+.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~--------~--------~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~--v~~~~~d 80 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPL--------L--------PEGSKYTGIDSGETLLAEARELFRLLPY--D--SEFLEGD 80 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTT--------S--------CTTCEEEEEESCHHHHHHHHHHHHSSSS--E--EEEEESC
T ss_pred CCCCeEEEecCCCCHHHHHHHHh--------C--------CCCCEEEEEECCHHHHHHHHHHHHhcCC--c--eEEEEcc
Confidence 44689999999999887665421 0 11245666665322111111 11111 1 1112223
Q ss_pred cccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCce
Q 040129 106 FHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGM 185 (333)
Q Consensus 106 Fy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~ 185 (333)
+..-.+ ++++|++++..++|++... ..+|+.=.+-|+|||.
T Consensus 81 ~~~~~~-~~~fD~v~~~~~l~~~~~~--------------------------------------~~~l~~~~~~LkpgG~ 121 (284)
T 3gu3_A 81 ATEIEL-NDKYDIAICHAFLLHMTTP--------------------------------------ETMLQKMIHSVKKGGK 121 (284)
T ss_dssp TTTCCC-SSCEEEEEEESCGGGCSSH--------------------------------------HHHHHHHHHTEEEEEE
T ss_pred hhhcCc-CCCeeEEEECChhhcCCCH--------------------------------------HHHHHHHHHHcCCCCE
Confidence 333223 4689999999999996331 1234444578999999
Q ss_pred EEEEecC
Q 040129 186 IIITNPS 192 (333)
Q Consensus 186 mvl~~~g 192 (333)
+++.-+.
T Consensus 122 l~~~~~~ 128 (284)
T 3gu3_A 122 IICFEPH 128 (284)
T ss_dssp EEEEECC
T ss_pred EEEEecc
Confidence 9988655
No 91
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=97.76 E-value=0.00027 Score=61.30 Aligned_cols=81 Identities=15% Similarity=0.217 Sum_probs=51.5
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEe
Q 040129 111 FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
+|++++|+++++.++||+.. | ..+|+.=.+-|+|||++++..
T Consensus 91 ~~~~~fD~v~~~~~l~~~~~-~-------------------------------------~~~l~~~~~~L~pgG~l~i~~ 132 (211)
T 2gs9_A 91 FPGESFDVVLLFTTLEFVED-V-------------------------------------ERVLLEARRVLRPGGALVVGV 132 (211)
T ss_dssp SCSSCEEEEEEESCTTTCSC-H-------------------------------------HHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCcEEEEEEcChhhhcCC-H-------------------------------------HHHHHHHHHHcCCCCEEEEEe
Confidence 67889999999999999642 1 123444457899999999998
Q ss_pred cCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCC
Q 040129 191 PSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNG 252 (333)
Q Consensus 191 ~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G 252 (333)
..+.+ .|..+.. .+...|. ...-...+.|.+|++++++ |
T Consensus 133 ~~~~~-----------~~~~~~~---~~~~~~~-------~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 133 LEALS-----------PWAALYR---RLGEKGV-------LPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp ECTTS-----------HHHHHHH---HHHHTTC-------TTGGGCCCCCHHHHHHHHC--S
T ss_pred cCCcC-----------cHHHHHH---HHhhccC-------ccccccccCCHHHHHHHhc--C
Confidence 76432 1221111 1112231 1111235679999999999 7
No 92
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=97.75 E-value=0.00022 Score=61.81 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=15.9
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
.-+|+|+||++|..++.+.
T Consensus 61 ~~~vLDiG~G~G~~~~~l~ 79 (205)
T 3grz_A 61 PLTVADVGTGSGILAIAAH 79 (205)
T ss_dssp CCEEEEETCTTSHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHH
Confidence 4699999999998887654
No 93
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=97.75 E-value=7.1e-05 Score=68.53 Aligned_cols=51 Identities=18% Similarity=0.224 Sum_probs=40.2
Q ss_pred cCCCCceeEEEec-cccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEE
Q 040129 110 LFPEKFLHLVHVS-YALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIII 188 (333)
Q Consensus 110 lfP~~Sv~~~~Ss-~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl 188 (333)
++|++++|+++|+ .++|++...... ..++..+|+.=++-|+|||++++
T Consensus 125 ~~~~~~fD~V~~~g~~l~~~~~~~~~-------------------------------~~~~~~~l~~~~~~LkpgG~l~~ 173 (293)
T 3thr_A 125 VPAGDGFDAVICLGNSFAHLPDSKGD-------------------------------QSEHRLALKNIASMVRPGGLLVI 173 (293)
T ss_dssp SCCTTCEEEEEECTTCGGGSCCSSSS-------------------------------SHHHHHHHHHHHHTEEEEEEEEE
T ss_pred cccCCCeEEEEEcChHHhhcCccccC-------------------------------HHHHHHHHHHHHHHcCCCeEEEE
Confidence 3789999999999 899997653321 14566778888899999999999
Q ss_pred Eec
Q 040129 189 TNP 191 (333)
Q Consensus 189 ~~~ 191 (333)
...
T Consensus 174 ~~~ 176 (293)
T 3thr_A 174 DHR 176 (293)
T ss_dssp EEE
T ss_pred EeC
Confidence 875
No 94
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=97.71 E-value=0.00027 Score=68.13 Aligned_cols=47 Identities=9% Similarity=0.136 Sum_probs=35.6
Q ss_pred cCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEE
Q 040129 110 LFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIIT 189 (333)
Q Consensus 110 lfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~ 189 (333)
-+|++++|+++|+.++||+.. ...+|+.=.+-|+|||+|++.
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d--------------------------------------~~~~l~~~~r~LkpgG~l~i~ 202 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTN--------------------------------------KLALFKEIHRVLRDGGELYFS 202 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCCCEEEEEEccchhcCCC--------------------------------------HHHHHHHHHHHcCCCCEEEEE
Confidence 478899999999999999533 123355555789999999998
Q ss_pred ecCCC
Q 040129 190 NPSIP 194 (333)
Q Consensus 190 ~~gr~ 194 (333)
.....
T Consensus 203 ~~~~~ 207 (383)
T 4fsd_A 203 DVYAD 207 (383)
T ss_dssp EEEES
T ss_pred Eeccc
Confidence 65543
No 95
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=97.68 E-value=0.00011 Score=67.33 Aligned_cols=44 Identities=11% Similarity=0.271 Sum_probs=33.7
Q ss_pred CCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEecC
Q 040129 113 EKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITNPS 192 (333)
Q Consensus 113 ~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g 192 (333)
++++|+++|+.++||++. .++..+|+.=.+-|+|||.+++....
T Consensus 182 ~~~fD~i~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~i~~~~ 225 (286)
T 3m70_A 182 QENYDFIVSTVVFMFLNR------------------------------------ERVPSIIKNMKEHTNVGGYNLIVAAM 225 (286)
T ss_dssp CSCEEEEEECSSGGGSCG------------------------------------GGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred cCCccEEEEccchhhCCH------------------------------------HHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 678999999999999743 23344566667889999998887644
No 96
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=97.58 E-value=0.00019 Score=64.81 Aligned_cols=66 Identities=11% Similarity=0.152 Sum_probs=40.4
Q ss_pred HHhhhhhhccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCC
Q 040129 173 LNNRAKEIVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNG 252 (333)
Q Consensus 173 L~~Ra~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G 252 (333)
|+.=.+-|+|||++++.+ . + .|+ ..+..+-..|++.... .+..+.+|+.+.++++|
T Consensus 120 l~~i~rvLkpgG~lv~~~-~-p------------~~e---~~~~~~~~~G~~~d~~-------~~~~~~~~l~~~l~~aG 175 (232)
T 3opn_A 120 LPPLYEILEKNGEVAALI-K-P------------QFE---AGREQVGKNGIIRDPK-------VHQMTIEKVLKTATQLG 175 (232)
T ss_dssp HHHHHHHSCTTCEEEEEE-C-H------------HHH---SCHHHHC-CCCCCCHH-------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccCCCEEEEEE-C-c------------ccc---cCHHHhCcCCeecCcc-------hhHHHHHHHHHHHHHCC
Confidence 344447899999999965 1 1 122 1122222345543211 12338899999999999
Q ss_pred cEEEeEEEEeC
Q 040129 253 NFRIEVMGLTN 263 (333)
Q Consensus 253 ~F~I~~le~~~ 263 (333)
|++..++...
T Consensus 176 -f~v~~~~~~p 185 (232)
T 3opn_A 176 -FSVKGLTFSP 185 (232)
T ss_dssp -EEEEEEEECS
T ss_pred -CEEEEEEEcc
Confidence 9998887553
No 97
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=97.52 E-value=0.00042 Score=60.10 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=17.1
Q ss_pred CcEEEEeecCCCCcccHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~ 49 (333)
..-+|+|+||++|..+..+.
T Consensus 77 ~~~~vLdiG~G~G~~~~~la 96 (210)
T 3lbf_A 77 PQSRVLEIGTGSGYQTAILA 96 (210)
T ss_dssp TTCEEEEECCTTSHHHHHHH
T ss_pred CCCEEEEEcCCCCHHHHHHH
Confidence 35799999999999998766
No 98
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=97.49 E-value=0.0011 Score=57.67 Aligned_cols=46 Identities=15% Similarity=0.280 Sum_probs=33.3
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEe
Q 040129 111 FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
+|++++|+++++.++|+... .|...+|+.=.+-|+|||++++..
T Consensus 99 ~~~~~~D~v~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~L~~gG~l~~~~ 142 (227)
T 1ve3_A 99 FEDKTFDYVIFIDSIVHFEP------------------------------------LELNQVFKEVRRVLKPSGKFIMYF 142 (227)
T ss_dssp SCTTCEEEEEEESCGGGCCH------------------------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCcEEEEEEcCchHhCCH------------------------------------HHHHHHHHHHHHHcCCCcEEEEEe
Confidence 56788999999998554211 233455666668899999999987
Q ss_pred cC
Q 040129 191 PS 192 (333)
Q Consensus 191 ~g 192 (333)
..
T Consensus 143 ~~ 144 (227)
T 1ve3_A 143 TD 144 (227)
T ss_dssp EC
T ss_pred cC
Confidence 64
No 99
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=97.49 E-value=0.00097 Score=58.62 Aligned_cols=114 Identities=11% Similarity=0.088 Sum_probs=60.9
Q ss_pred CCcEEEEeecCC-CCcccHHHHHH-------------HHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCcc
Q 040129 29 SNTIRLADCGCA-VGPNTFNAMQD-------------LIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQE 94 (333)
Q Consensus 29 ~~~~~IaD~GCs-~G~Ns~~~~~~-------------ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~ 94 (333)
+..-+|+|+||+ +|..++.+... .++..++.....+ ..++++..|.. ++
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~v~~~~~d~~--~~---------- 116 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNN-----SNVRLVKSNGG--II---------- 116 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTT-----CCCEEEECSSC--SS----------
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhC-----CCcEEEeCCch--hh----------
Confidence 345799999999 99999877643 2333333333321 13555555531 00
Q ss_pred ccceeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHH
Q 040129 95 IHFFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLN 174 (333)
Q Consensus 95 ~~~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~ 174 (333)
.-+|++++|+++++-.+||..... +.+ ...++..+. .. ..+...||+
T Consensus 117 --------------~~~~~~~fD~I~~npp~~~~~~~~--~~~-~~~~~~~~~-----~~-----------~~~~~~~l~ 163 (230)
T 3evz_A 117 --------------KGVVEGTFDVIFSAPPYYDKPLGR--VLT-EREAIGGGK-----YG-----------EEFSVKLLE 163 (230)
T ss_dssp --------------TTTCCSCEEEEEECCCCC------------------CCS-----SS-----------CHHHHHHHH
T ss_pred --------------hhcccCceeEEEECCCCcCCcccc--ccC-hhhhhccCc-----cc-----------hHHHHHHHH
Confidence 123457899999998888865411 110 000111110 00 123355677
Q ss_pred hhhhhhccCceEEEEecC
Q 040129 175 NRAKEIVPGGMIIITNPS 192 (333)
Q Consensus 175 ~Ra~EL~~GG~mvl~~~g 192 (333)
.=.+-|+|||++++.+..
T Consensus 164 ~~~~~LkpgG~l~~~~~~ 181 (230)
T 3evz_A 164 EAFDHLNPGGKVALYLPD 181 (230)
T ss_dssp HHGGGEEEEEEEEEEEES
T ss_pred HHHHHhCCCeEEEEEecc
Confidence 667889999999998643
No 100
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=97.49 E-value=0.0012 Score=56.79 Aligned_cols=60 Identities=20% Similarity=0.351 Sum_probs=41.3
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEe
Q 040129 111 FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
+|++++|+++++.++|.+..... ..|... .....|...+|+.=.+-|+|||++++..
T Consensus 103 ~~~~~fD~v~~~~~~~~~~~~~~-------~~~~~~----------------~~~~~~~~~~l~~~~~~LkpgG~li~~~ 159 (215)
T 2pxx_A 103 FPSASFDVVLEKGTLDALLAGER-------DPWTVS----------------SEGVHTVDQVLSEVSRVLVPGGRFISMT 159 (215)
T ss_dssp SCSSCEEEEEEESHHHHHTTTCS-------CTTSCC----------------HHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCcccEEEECcchhhhccccc-------cccccc----------------cchhHHHHHHHHHHHHhCcCCCEEEEEe
Confidence 67889999999999987643211 112211 1123566777888788899999999988
Q ss_pred cCC
Q 040129 191 PSI 193 (333)
Q Consensus 191 ~gr 193 (333)
.+.
T Consensus 160 ~~~ 162 (215)
T 2pxx_A 160 SAA 162 (215)
T ss_dssp SCC
T ss_pred CCC
Confidence 664
No 101
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=97.48 E-value=0.0011 Score=64.13 Aligned_cols=96 Identities=15% Similarity=0.209 Sum_probs=62.9
Q ss_pred CcEEEEeecCCCCcccHHHHH------------HHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQ------------DLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHF 97 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~------------~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~ 97 (333)
..-+|+|+||++|..++.+.. ..++..++.....+ ..++++..
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~-----~~v~~~~~-------------------- 287 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANA-----LKAQALHS-------------------- 287 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTT-----CCCEEEEC--------------------
T ss_pred CCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcC-----CCeEEEEc--------------------
Confidence 346999999999999988763 23333333332211 11333333
Q ss_pred eeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhh
Q 040129 98 FVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRA 177 (333)
Q Consensus 98 f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra 177 (333)
.+..-+.+++++|+++|+..+||...... .+...|++.=.
T Consensus 288 -------D~~~~~~~~~~fD~Ii~npp~~~~~~~~~---------------------------------~~~~~~l~~~~ 327 (381)
T 3dmg_A 288 -------DVDEALTEEARFDIIVTNPPFHVGGAVIL---------------------------------DVAQAFVNVAA 327 (381)
T ss_dssp -------STTTTSCTTCCEEEEEECCCCCTTCSSCC---------------------------------HHHHHHHHHHH
T ss_pred -------chhhccccCCCeEEEEECCchhhcccccH---------------------------------HHHHHHHHHHH
Confidence 33333445688999999999998443221 35556777777
Q ss_pred hhhccCceEEEEe
Q 040129 178 KEIVPGGMIIITN 190 (333)
Q Consensus 178 ~EL~~GG~mvl~~ 190 (333)
+-|+|||+++++.
T Consensus 328 ~~LkpGG~l~iv~ 340 (381)
T 3dmg_A 328 ARLRPGGVFFLVS 340 (381)
T ss_dssp HHEEEEEEEEEEE
T ss_pred HhcCcCcEEEEEE
Confidence 8999999999986
No 102
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=97.46 E-value=0.00014 Score=63.70 Aligned_cols=22 Identities=5% Similarity=0.071 Sum_probs=18.8
Q ss_pred HHHHHHHHHhCCcEEEeEEEEeC
Q 040129 241 PGEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 241 ~~E~~~~ie~~G~F~I~~le~~~ 263 (333)
.++++..+++.| |+|..++.+.
T Consensus 164 ~~~l~~~l~~aG-f~i~~~~~~~ 185 (218)
T 3mq2_A 164 DEWLAPRYAEAG-WKLADCRYLE 185 (218)
T ss_dssp HHHHHHHHHHTT-EEEEEEEEEC
T ss_pred HHHHHHHHHHcC-CCceeeeccc
Confidence 456888999999 9999999875
No 103
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=97.44 E-value=0.00029 Score=63.67 Aligned_cols=156 Identities=17% Similarity=0.241 Sum_probs=82.0
Q ss_pred CcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCcccccc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKR 109 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~r 109 (333)
..-+|+|+||++|..+..+... ..+|+..|.-..=-...=+... ..|. -+.+..-
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~-------------------~~~v~gvD~s~~~l~~a~~~~~---~~~~---~~d~~~~ 108 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER-------------------GFEVVLVDPSKEMLEVAREKGV---KNVV---EAKAEDL 108 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT-------------------TCEEEEEESCHHHHHHHHHHTC---SCEE---ECCTTSC
T ss_pred CCCeEEEeCCCcCHHHHHHHHc-------------------CCeEEEEeCCHHHHHHHHhhcC---CCEE---ECcHHHC
Confidence 3469999999999988765421 1234444432211111111111 0122 1223222
Q ss_pred cCCCCceeEEEecc-ccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEE
Q 040129 110 LFPEKFLHLVHVSY-ALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIII 188 (333)
Q Consensus 110 lfP~~Sv~~~~Ss~-alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl 188 (333)
-+|++++|+++++. .+||... | ..+|+.=.+-|+|||++++
T Consensus 109 ~~~~~~fD~v~~~~~~~~~~~~-~-------------------------------------~~~l~~~~~~LkpgG~l~~ 150 (260)
T 2avn_A 109 PFPSGAFEAVLALGDVLSYVEN-K-------------------------------------DKAFSEIRRVLVPDGLLIA 150 (260)
T ss_dssp CSCTTCEEEEEECSSHHHHCSC-H-------------------------------------HHHHHHHHHHEEEEEEEEE
T ss_pred CCCCCCEEEEEEcchhhhcccc-H-------------------------------------HHHHHHHHHHcCCCeEEEE
Confidence 36789999999976 5677433 1 2235555678999999999
Q ss_pred EecCCCCCCCCccchhhHHHHHHH----HHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHhCCcEEEeEEEEeC
Q 040129 189 TNPSIPDGMPFSEIANGLMYNCMG----TILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 189 ~~~gr~~~~~~~~~~~~~~~~~l~----~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 263 (333)
...+... ...+.+. ..+......|...... ....++.++.+.+|++++ +| |++...+-..
T Consensus 151 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l---aG-f~~~~~~~~~ 214 (260)
T 2avn_A 151 TVDNFYT----------FLQQMIEKDAWDQITRFLKTQTTSVGT-TLFSFNSYAFKPEDLDSL---EG-FETVDIRGIG 214 (260)
T ss_dssp EEEBHHH----------HHHHHHHTTCHHHHHHHHHHCEEEEEC-SSEEEEEECBCGGGGSSC---TT-EEEEEEEEEC
T ss_pred EeCChHH----------HHHHhhcchhHHHHHHHHhccccccCC-CceeEEEeccCHHHHHHh---cC-ceEEEEECCC
Confidence 9865321 0111100 1112222334322000 001122236788998887 88 9998887665
No 104
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=97.41 E-value=0.00035 Score=59.34 Aligned_cols=71 Identities=13% Similarity=-0.004 Sum_probs=42.0
Q ss_pred EEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCcccccccC
Q 040129 32 IRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKRLF 111 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~rlf 111 (333)
-+|+|+||++|..++.+.... +|+--|.-..=-.. .. + +..+-|.+.. .+
T Consensus 25 ~~vLD~GcG~G~~~~~l~~~~--------------------~v~gvD~s~~~~~~-----~~--~--~~~~~~d~~~-~~ 74 (170)
T 3q87_B 25 KIVLDLGTSTGVITEQLRKRN--------------------TVVSTDLNIRALES-----HR--G--GNLVRADLLC-SI 74 (170)
T ss_dssp CEEEEETCTTCHHHHHHTTTS--------------------EEEEEESCHHHHHT-----CS--S--SCEEECSTTT-TB
T ss_pred CeEEEeccCccHHHHHHHhcC--------------------cEEEEECCHHHHhc-----cc--C--CeEEECChhh-hc
Confidence 499999999999887765321 33333332110000 10 1 1112334444 45
Q ss_pred CCCceeEEEeccccccccCCC
Q 040129 112 PEKFLHLVHVSYALHWLSKVP 132 (333)
Q Consensus 112 P~~Sv~~~~Ss~alHWLS~vP 132 (333)
|++++|+++|+..+||.+..+
T Consensus 75 ~~~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 75 NQESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp CGGGCSEEEECCCCBTTCCCT
T ss_pred ccCCCCEEEECCCCccCCccc
Confidence 668999999999999977643
No 105
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=97.40 E-value=0.0013 Score=55.30 Aligned_cols=95 Identities=14% Similarity=0.155 Sum_probs=62.0
Q ss_pred CcEEEEeecCCCCcccHHHH------------HHHHHHHHHHhhhcCCCCCCCc--ceEEecCCCCCchHHHhhcCCccc
Q 040129 30 NTIRLADCGCAVGPNTFNAM------------QDLIEIVKHKYKSQCPNSQNPE--FHVSFNDQSSNDFNTLFTSLPQEI 95 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~------------~~ii~~i~~~~~~~~~~~~~~~--~~v~~nDlP~NDFn~lF~~l~~~~ 95 (333)
..-+|+|+||++|..++.+. ...++..++.....+ .+. +++...|..
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~----~~~~~~~~~~~d~~--------------- 112 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNN----LDNYDIRVVHSDLY--------------- 112 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTT----CTTSCEEEEECSTT---------------
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcC----CCccceEEEECchh---------------
Confidence 35699999999999888765 234444444433321 112 444444442
Q ss_pred cceeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHh
Q 040129 96 HFFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNN 175 (333)
Q Consensus 96 ~~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~ 175 (333)
. .+|.+++|+++++..+||- ..++..+|+.
T Consensus 113 ------------~-~~~~~~~D~v~~~~~~~~~-------------------------------------~~~~~~~l~~ 142 (194)
T 1dus_A 113 ------------E-NVKDRKYNKIITNPPIRAG-------------------------------------KEVLHRIIEE 142 (194)
T ss_dssp ------------T-TCTTSCEEEEEECCCSTTC-------------------------------------HHHHHHHHHH
T ss_pred ------------c-ccccCCceEEEECCCcccc-------------------------------------hhHHHHHHHH
Confidence 1 2346789999998888870 1344556777
Q ss_pred hhhhhccCceEEEEecCC
Q 040129 176 RAKEIVPGGMIIITNPSI 193 (333)
Q Consensus 176 Ra~EL~~GG~mvl~~~gr 193 (333)
=.+-|+|||++++.....
T Consensus 143 ~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 143 GKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp HHHHEEEEEEEEEEEEST
T ss_pred HHHHcCCCCEEEEEECCC
Confidence 778899999999998654
No 106
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=97.38 E-value=0.0021 Score=53.76 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=17.2
Q ss_pred CCcEEEEeecCCCCcccHHHH
Q 040129 29 SNTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~ 49 (333)
...-+|+|+||++|..++.+.
T Consensus 24 ~~~~~vldiG~G~G~~~~~l~ 44 (178)
T 3hm2_A 24 KPHETLWDIGGGSGSIAIEWL 44 (178)
T ss_dssp CTTEEEEEESTTTTHHHHHHH
T ss_pred cCCCeEEEeCCCCCHHHHHHH
Confidence 345799999999998887665
No 107
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=97.37 E-value=0.00073 Score=58.06 Aligned_cols=55 Identities=13% Similarity=0.085 Sum_probs=34.9
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEe
Q 040129 111 FPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 111 fP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
+|.+++|+++|..++||... ...+ .+ ...+.....|+.=.+-|+|||+|++.+
T Consensus 102 ~~~~~fD~v~~~~~~~~~g~---~~~d----------------------~~--~~~~~~~~~l~~~~~~LkpgG~lv~~~ 154 (201)
T 2plw_A 102 LQDKKIDIILSDAAVPCIGN---KIDD----------------------HL--NSCELTLSITHFMEQYINIGGTYIVKM 154 (201)
T ss_dssp HTTCCEEEEEECCCCCCCSC---HHHH----------------------HH--HHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCCcccEEEeCCCcCCCCC---cccC----------------------HH--HHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 68889999999999999421 0000 00 001122345555567899999999976
Q ss_pred cC
Q 040129 191 PS 192 (333)
Q Consensus 191 ~g 192 (333)
..
T Consensus 155 ~~ 156 (201)
T 2plw_A 155 YL 156 (201)
T ss_dssp EC
T ss_pred eC
Confidence 54
No 108
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=97.36 E-value=0.00095 Score=58.62 Aligned_cols=47 Identities=17% Similarity=0.323 Sum_probs=34.5
Q ss_pred CCceeEEEec-cccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEec
Q 040129 113 EKFLHLVHVS-YALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITNP 191 (333)
Q Consensus 113 ~~Sv~~~~Ss-~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~ 191 (333)
++++|+++|+ .++||+... .|+..+|+.=.+-|+|||++++...
T Consensus 98 ~~~~D~v~~~~~~~~~~~~~-----------------------------------~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (239)
T 3bxo_A 98 GRKFSAVVSMFSSVGYLKTT-----------------------------------EELGAAVASFAEHLEPGGVVVVEPW 142 (239)
T ss_dssp SSCEEEEEECTTGGGGCCSH-----------------------------------HHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred CCCCcEEEEcCchHhhcCCH-----------------------------------HHHHHHHHHHHHhcCCCeEEEEEec
Confidence 5689999964 499996320 3455667777789999999999865
Q ss_pred CCC
Q 040129 192 SIP 194 (333)
Q Consensus 192 gr~ 194 (333)
..+
T Consensus 143 ~~~ 145 (239)
T 3bxo_A 143 WFP 145 (239)
T ss_dssp CCT
T ss_pred cCc
Confidence 443
No 109
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=97.35 E-value=0.0014 Score=56.11 Aligned_cols=98 Identities=10% Similarity=0.056 Sum_probs=58.3
Q ss_pred cEEEEeecCCCCcccHHHH-------------HHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccc
Q 040129 31 TIRLADCGCAVGPNTFNAM-------------QDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHF 97 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~-------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~ 97 (333)
.-+|+|+||++|..++.+. ...++..++.....+ ...++++..|. ..+.
T Consensus 45 ~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~v~~~~~d~-----~~~~--------- 106 (189)
T 3p9n_A 45 GLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALG----LSGATLRRGAV-----AAVV--------- 106 (189)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHT----CSCEEEEESCH-----HHHH---------
T ss_pred CCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC----CCceEEEEccH-----HHHH---------
Confidence 4689999999999998655 233444444333321 12344444432 1110
Q ss_pred eeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhh
Q 040129 98 FVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRA 177 (333)
Q Consensus 98 f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra 177 (333)
.-+|++++|++++...+||.. .|+..+|+.-.
T Consensus 107 -----------~~~~~~~fD~i~~~~p~~~~~-------------------------------------~~~~~~l~~~~ 138 (189)
T 3p9n_A 107 -----------AAGTTSPVDLVLADPPYNVDS-------------------------------------ADVDAILAALG 138 (189)
T ss_dssp -----------HHCCSSCCSEEEECCCTTSCH-------------------------------------HHHHHHHHHHH
T ss_pred -----------hhccCCCccEEEECCCCCcch-------------------------------------hhHHHHHHHHH
Confidence 013567899999987777621 22333344444
Q ss_pred h--hhccCceEEEEecCCC
Q 040129 178 K--EIVPGGMIIITNPSIP 194 (333)
Q Consensus 178 ~--EL~~GG~mvl~~~gr~ 194 (333)
+ -|+|||++++....+.
T Consensus 139 ~~~~L~pgG~l~~~~~~~~ 157 (189)
T 3p9n_A 139 TNGWTREGTVAVVERATTC 157 (189)
T ss_dssp HSSSCCTTCEEEEEEETTS
T ss_pred hcCccCCCeEEEEEecCCC
Confidence 4 7999999999886654
No 110
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=97.34 E-value=0.00054 Score=63.20 Aligned_cols=21 Identities=14% Similarity=-0.043 Sum_probs=17.7
Q ss_pred CCcEEEEeecCCCCcccHHHH
Q 040129 29 SNTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~ 49 (333)
...-+|+|+||++|..|+.+.
T Consensus 44 ~~g~~VLDlGcGtG~~a~~La 64 (261)
T 3iv6_A 44 VPGSTVAVIGASTRFLIEKAL 64 (261)
T ss_dssp CTTCEEEEECTTCHHHHHHHH
T ss_pred CCcCEEEEEeCcchHHHHHHH
Confidence 335799999999999998876
No 111
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=97.34 E-value=0.0018 Score=54.82 Aligned_cols=19 Identities=16% Similarity=0.041 Sum_probs=17.0
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
.-+|+|+||++|..|+.+.
T Consensus 23 ~~~vLDiGcG~G~~~~~la 41 (185)
T 3mti_A 23 ESIVVDATMGNGNDTAFLA 41 (185)
T ss_dssp TCEEEESCCTTSHHHHHHH
T ss_pred CCEEEEEcCCCCHHHHHHH
Confidence 4689999999999998876
No 112
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=97.32 E-value=0.00048 Score=62.57 Aligned_cols=124 Identities=13% Similarity=0.046 Sum_probs=65.4
Q ss_pred HHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhh
Q 040129 10 HIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFT 89 (333)
Q Consensus 10 ~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~ 89 (333)
.|-.||..-++... -..-.+|+|+||++|..+..+.+.+ . |+=.|+--|.-..=-..+-+
T Consensus 61 klaa~i~~gl~~l~----ikpG~~VldlG~G~G~~~~~la~~V--------G--------~~G~V~avD~s~~~~~~l~~ 120 (233)
T 4df3_A 61 KLAAALLKGLIELP----VKEGDRILYLGIASGTTASHMSDII--------G--------PRGRIYGVEFAPRVMRDLLT 120 (233)
T ss_dssp HHHHHHHTTCSCCC----CCTTCEEEEETCTTSHHHHHHHHHH--------C--------TTCEEEEEECCHHHHHHHHH
T ss_pred HHHHHHHhchhhcC----CCCCCEEEEecCcCCHHHHHHHHHh--------C--------CCceEEEEeCCHHHHHHHHH
Confidence 45556654343221 2334799999999999987765321 1 11123332221110001111
Q ss_pred cCCcccc-ceeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHh
Q 040129 90 SLPQEIH-FFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKD 168 (333)
Q Consensus 90 ~l~~~~~-~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D 168 (333)
......+ ..+.+..+....--++.+++|++|+..+.||-
T Consensus 121 ~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~~~~~~---------------------------------------- 160 (233)
T 4df3_A 121 VVRDRRNIFPILGDARFPEKYRHLVEGVDGLYADVAQPEQ---------------------------------------- 160 (233)
T ss_dssp HSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEECCCCTTH----------------------------------------
T ss_pred hhHhhcCeeEEEEeccCccccccccceEEEEEEeccCChh----------------------------------------
Confidence 1111112 23444445444445677889999976665551
Q ss_pred HHHHHHhhhhhhccCceEEEEecCC
Q 040129 169 LERFLNNRAKEIVPGGMIIITNPSI 193 (333)
Q Consensus 169 ~~~FL~~Ra~EL~~GG~mvl~~~gr 193 (333)
-..++..=.+-|||||++++.+-.+
T Consensus 161 ~~~~l~~~~r~LKpGG~lvI~ik~r 185 (233)
T 4df3_A 161 AAIVVRNARFFLRDGGYMLMAIKAR 185 (233)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred HHHHHHHHHHhccCCCEEEEEEecc
Confidence 1123444457799999999987444
No 113
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=97.32 E-value=0.0045 Score=53.38 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=17.4
Q ss_pred CcEEEEeecCCCCcccHHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~ 50 (333)
..-+|+|+||++|..++.+..
T Consensus 40 ~~~~vLDiG~G~G~~~~~la~ 60 (204)
T 3e05_A 40 DDLVMWDIGAGSASVSIEASN 60 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHH
Confidence 347999999999999887763
No 114
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=97.29 E-value=0.0018 Score=57.11 Aligned_cols=19 Identities=26% Similarity=0.592 Sum_probs=16.2
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
.-+|+|+||++|..+..+.
T Consensus 49 ~~~vLDiGcG~G~~~~~l~ 67 (226)
T 3m33_A 49 QTRVLEAGCGHGPDAARFG 67 (226)
T ss_dssp TCEEEEESCTTSHHHHHHG
T ss_pred CCeEEEeCCCCCHHHHHHH
Confidence 4689999999999887665
No 115
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=97.25 E-value=0.00067 Score=59.80 Aligned_cols=93 Identities=22% Similarity=0.414 Sum_probs=59.1
Q ss_pred EEEEeecCCCCcccHHHH-----------HHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceee
Q 040129 32 IRLADCGCAVGPNTFNAM-----------QDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVA 100 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~-----------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~ 100 (333)
-+|+|+||++|..+..+. ...++..+++.... .+.+++...|..
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~d~~-------------------- 89 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEKAMET-----NRHVDFWVQDMR-------------------- 89 (243)
T ss_dssp CEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHHHHHHHT-----TCCCEEEECCGG--------------------
T ss_pred CeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHHHhhhhc-----CCceEEEEcChh--------------------
Confidence 699999999999887765 23444444433321 122344433321
Q ss_pred ccCcccccccCCCCceeEEEecc-ccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhh
Q 040129 101 GVPGSFHKRLFPEKFLHLVHVSY-ALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKE 179 (333)
Q Consensus 101 ~vpgSFy~rlfP~~Sv~~~~Ss~-alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~E 179 (333)
.-.+| +++|++++.. ++||+.. ..|...+|+.=.+-
T Consensus 90 -------~~~~~-~~fD~v~~~~~~~~~~~~-----------------------------------~~~~~~~l~~~~~~ 126 (243)
T 3d2l_A 90 -------ELELP-EPVDAITILCDSLNYLQT-----------------------------------EADVKQTFDSAARL 126 (243)
T ss_dssp -------GCCCS-SCEEEEEECTTGGGGCCS-----------------------------------HHHHHHHHHHHHHH
T ss_pred -------hcCCC-CCcCEEEEeCCchhhcCC-----------------------------------HHHHHHHHHHHHHh
Confidence 11133 7799999987 9999632 03445566666788
Q ss_pred hccCceEEEEecC
Q 040129 180 IVPGGMIIITNPS 192 (333)
Q Consensus 180 L~~GG~mvl~~~g 192 (333)
|+|||++++.+..
T Consensus 127 L~pgG~l~~~~~~ 139 (243)
T 3d2l_A 127 LTDGGKLLFDVHS 139 (243)
T ss_dssp EEEEEEEEEEEEC
T ss_pred cCCCeEEEEEcCC
Confidence 9999999997743
No 116
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=97.25 E-value=0.0012 Score=58.78 Aligned_cols=25 Identities=32% Similarity=0.688 Sum_probs=19.4
Q ss_pred hHHHHHHhhhhhhccCceEEEEecC
Q 040129 168 DLERFLNNRAKEIVPGGMIIITNPS 192 (333)
Q Consensus 168 D~~~FL~~Ra~EL~~GG~mvl~~~g 192 (333)
|...+|+.=++-|+|||++++.+..
T Consensus 123 ~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 123 DLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCeEEEEeccc
Confidence 4556677667889999999998754
No 117
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=97.21 E-value=0.0014 Score=64.45 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=17.2
Q ss_pred CcEEEEeecCCCCcccHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~ 49 (333)
..-+|+|+||++|..++.+.
T Consensus 173 ~gd~VLDLGCGtG~l~l~lA 192 (438)
T 3uwp_A 173 DDDLFVDLGSGVGQVVLQVA 192 (438)
T ss_dssp TTCEEEEESCTTSHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHH
Confidence 34689999999999998876
No 118
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=97.19 E-value=0.0015 Score=57.59 Aligned_cols=101 Identities=18% Similarity=0.221 Sum_probs=58.2
Q ss_pred cEEEEeecCCCCcccHHHHHH--------------HHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCcccc
Q 040129 31 TIRLADCGCAVGPNTFNAMQD--------------LIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIH 96 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~--------------ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~ 96 (333)
.-+|+|+||++|..++.+... .++..+++....+ .+.+.++..|.-. +
T Consensus 39 ~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~----~~nv~~~~~d~~~-----l--------- 100 (213)
T 2fca_A 39 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE----AQNVKLLNIDADT-----L--------- 100 (213)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC----CSSEEEECCCGGG-----H---------
T ss_pred CceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcC----CCCEEEEeCCHHH-----H---------
Confidence 457999999999999876532 2333333322211 1234444444321 1
Q ss_pred ceeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhh
Q 040129 97 FFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNR 176 (333)
Q Consensus 97 ~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~R 176 (333)
...+|++++|.++++++.+|....- . +.++ ....||+.=
T Consensus 101 -----------~~~~~~~~~d~v~~~~~~p~~~~~~-~----------~~rl-------------------~~~~~l~~~ 139 (213)
T 2fca_A 101 -----------TDVFEPGEVKRVYLNFSDPWPKKRH-E----------KRRL-------------------TYSHFLKKY 139 (213)
T ss_dssp -----------HHHCCTTSCCEEEEESCCCCCSGGG-G----------GGST-------------------TSHHHHHHH
T ss_pred -----------HhhcCcCCcCEEEEECCCCCcCccc-c----------cccc-------------------CcHHHHHHH
Confidence 1247888999999888777743210 0 0010 012345555
Q ss_pred hhhhccCceEEEEe
Q 040129 177 AKEIVPGGMIIITN 190 (333)
Q Consensus 177 a~EL~~GG~mvl~~ 190 (333)
++-|+|||.+++..
T Consensus 140 ~~~LkpgG~l~~~t 153 (213)
T 2fca_A 140 EEVMGKGGSIHFKT 153 (213)
T ss_dssp HHHHTTSCEEEEEE
T ss_pred HHHcCCCCEEEEEe
Confidence 57899999999876
No 119
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=97.19 E-value=0.00029 Score=62.49 Aligned_cols=72 Identities=14% Similarity=0.145 Sum_probs=50.3
Q ss_pred CCcEEEEeecCCCCcccHHHH--------------HHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCcc
Q 040129 29 SNTIRLADCGCAVGPNTFNAM--------------QDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQE 94 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~--------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~ 94 (333)
+.+-+|.|+||+.|+.++.++ ...|+..++.....+ .+..+-+.|+..
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g-----~~~~v~~~d~~~------------- 109 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLK-----TTIKYRFLNKES------------- 109 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSC-----CSSEEEEECCHH-------------
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC-----CCccEEEecccc-------------
Confidence 336799999999999999985 567777777765543 122233333311
Q ss_pred ccceeeccCcccccccCCCCceeEEEeccccccccCCCc
Q 040129 95 IHFFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPE 133 (333)
Q Consensus 95 ~~~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~ 133 (333)
..|+.+.|++.++..||-|.+.+.
T Consensus 110 ---------------~~~~~~~DvVLa~k~LHlL~~~~~ 133 (200)
T 3fzg_A 110 ---------------DVYKGTYDVVFLLKMLPVLKQQDV 133 (200)
T ss_dssp ---------------HHTTSEEEEEEEETCHHHHHHTTC
T ss_pred ---------------cCCCCCcChhhHhhHHHhhhhhHH
Confidence 146788999999999999955443
No 120
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=97.15 E-value=0.00056 Score=60.86 Aligned_cols=52 Identities=21% Similarity=0.408 Sum_probs=34.4
Q ss_pred ccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEE
Q 040129 109 RLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIII 188 (333)
Q Consensus 109 rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl 188 (333)
..+|++|+|.+++++...|-.... .+.++. . ..||+.=++-|+|||.+++
T Consensus 99 ~~~~~~~~d~v~~~~~~p~~~~~~-----------~~rr~~----~---------------~~~l~~~~r~LkpGG~l~i 148 (218)
T 3dxy_A 99 KMIPDNSLRMVQLFFPDPWHKARH-----------NKRRIV----Q---------------VPFAELVKSKLQLGGVFHM 148 (218)
T ss_dssp HHSCTTCEEEEEEESCCCCCSGGG-----------GGGSSC----S---------------HHHHHHHHHHEEEEEEEEE
T ss_pred HHcCCCChheEEEeCCCCccchhh-----------hhhhhh----h---------------HHHHHHHHHHcCCCcEEEE
Confidence 457899999999999988833211 011110 1 1245555688999999998
Q ss_pred Ee
Q 040129 189 TN 190 (333)
Q Consensus 189 ~~ 190 (333)
..
T Consensus 149 ~t 150 (218)
T 3dxy_A 149 AT 150 (218)
T ss_dssp EE
T ss_pred Ee
Confidence 76
No 121
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=97.12 E-value=0.003 Score=55.97 Aligned_cols=19 Identities=11% Similarity=0.100 Sum_probs=16.2
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
..+|+|+||++|..+..+.
T Consensus 61 ~~~vLDiGcGtG~~~~~l~ 79 (236)
T 1zx0_A 61 GGRVLEVGFGMAIAASKVQ 79 (236)
T ss_dssp CEEEEEECCTTSHHHHHHH
T ss_pred CCeEEEEeccCCHHHHHHH
Confidence 5799999999999887664
No 122
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=97.10 E-value=0.00066 Score=64.72 Aligned_cols=102 Identities=17% Similarity=0.156 Sum_probs=60.7
Q ss_pred cEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCC-ccc-cceeeccCccccc
Q 040129 31 TIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLP-QEI-HFFVAGVPGSFHK 108 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~-~~~-~~f~~~vpgSFy~ 108 (333)
.-+|+|+||++|..++.+.+. +.-+|+--|.. . .-...+... ... .--+.-+-|+...
T Consensus 67 ~~~VLDvGcG~G~~~~~la~~------------------g~~~v~gvD~s-~-~l~~a~~~~~~~~~~~~v~~~~~d~~~ 126 (349)
T 3q7e_A 67 DKVVLDVGSGTGILCMFAAKA------------------GARKVIGIECS-S-ISDYAVKIVKANKLDHVVTIIKGKVEE 126 (349)
T ss_dssp TCEEEEESCTTSHHHHHHHHT------------------TCSEEEEEECS-T-HHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred CCEEEEEeccchHHHHHHHHC------------------CCCEEEEECcH-H-HHHHHHHHHHHcCCCCcEEEEECcHHH
Confidence 468999999999988776531 11345666654 2 222222110 000 0001222233333
Q ss_pred ccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEE
Q 040129 109 RLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMII 187 (333)
Q Consensus 109 rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mv 187 (333)
--+|.+++|+++|....|++... .++..+|+.+.+-|+|||+|+
T Consensus 127 ~~~~~~~fD~Iis~~~~~~l~~~-----------------------------------~~~~~~l~~~~r~LkpgG~li 170 (349)
T 3q7e_A 127 VELPVEKVDIIISEWMGYCLFYE-----------------------------------SMLNTVLHARDKWLAPDGLIF 170 (349)
T ss_dssp CCCSSSCEEEEEECCCBBTBTBT-----------------------------------CCHHHHHHHHHHHEEEEEEEE
T ss_pred ccCCCCceEEEEEccccccccCc-----------------------------------hhHHHHHHHHHHhCCCCCEEc
Confidence 34788999999998766654331 244567888899999999997
No 123
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=97.09 E-value=0.008 Score=53.93 Aligned_cols=107 Identities=14% Similarity=0.184 Sum_probs=57.3
Q ss_pred CCcEEEEeecCCCCcccHHHH--------------HHHHHHHHHHhhh---cCCCCCCCcceEEecCCCCCchHHHhhcC
Q 040129 29 SNTIRLADCGCAVGPNTFNAM--------------QDLIEIVKHKYKS---QCPNSQNPEFHVSFNDQSSNDFNTLFTSL 91 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~--------------~~ii~~i~~~~~~---~~~~~~~~~~~v~~nDlP~NDFn~lF~~l 91 (333)
.+.-+|+|+||++|..++.+. ...++..+++... .. ......+.++..|.-.
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~-~~~~~nv~~~~~d~~~---------- 113 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAP-AGGFQNIACLRSNAMK---------- 113 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHST-TCCCTTEEEEECCTTT----------
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHH-hcCCCeEEEEECcHHH----------
Confidence 456799999999999988765 2233333322211 00 0012335555555421
Q ss_pred CccccceeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHH
Q 040129 92 PQEIHFFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLER 171 (333)
Q Consensus 92 ~~~~~~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~ 171 (333)
+....||++++|.++..+.-.|..+.- .|.++ ....
T Consensus 114 --------------~l~~~~~~~~~D~v~~~~~dp~~k~~h-----------~krr~-------------------~~~~ 149 (235)
T 3ckk_A 114 --------------HLPNFFYKGQLTKMFFLFPDPHFKRTK-----------HKWRI-------------------ISPT 149 (235)
T ss_dssp --------------CHHHHCCTTCEEEEEEESCC----------------------C-------------------CCHH
T ss_pred --------------hhhhhCCCcCeeEEEEeCCCchhhhhh-----------hhhhh-------------------hhHH
Confidence 112347889999999887777743210 01011 0123
Q ss_pred HHHhhhhhhccCceEEEEe
Q 040129 172 FLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 172 FL~~Ra~EL~~GG~mvl~~ 190 (333)
||+.=++-|+|||.+++..
T Consensus 150 ~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 150 LLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp HHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHCCCCCEEEEEe
Confidence 4555568899999999876
No 124
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=97.06 E-value=0.00084 Score=62.96 Aligned_cols=160 Identities=17% Similarity=0.128 Sum_probs=85.2
Q ss_pred HHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhh
Q 040129 10 HIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFT 89 (333)
Q Consensus 10 ~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~ 89 (333)
.|++++... .. ....-+|+|+||++|..|..+.+. ..-+|+--|+-.+=-..-.+
T Consensus 72 Kl~~~l~~~-~~------~~~g~~vLDiGcGTG~~t~~L~~~------------------ga~~V~aVDvs~~mL~~a~r 126 (291)
T 3hp7_A 72 KLEKALAVF-NL------SVEDMITIDIGASTGGFTDVMLQN------------------GAKLVYAVDVGTNQLVWKLR 126 (291)
T ss_dssp HHHHHHHHT-TC------CCTTCEEEEETCTTSHHHHHHHHT------------------TCSEEEEECSSSSCSCHHHH
T ss_pred HHHHHHHhc-CC------CccccEEEecCCCccHHHHHHHhC------------------CCCEEEEEECCHHHHHHHHH
Confidence 466666542 22 234579999999999999766531 11235555654432111011
Q ss_pred cCCccccceeeccC--cccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHH
Q 040129 90 SLPQEIHFFVAGVP--GSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAK 167 (333)
Q Consensus 90 ~l~~~~~~f~~~vp--gSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~ 167 (333)
.-+ .+-..... ...-..-+|..++|++.+..++|||.++
T Consensus 127 ~~~---rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~sl~~v------------------------------------ 167 (291)
T 3hp7_A 127 QDD---RVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFISLNLI------------------------------------ 167 (291)
T ss_dssp TCT---TEEEECSCCGGGCCGGGCTTCCCSEEEECCSSSCGGGT------------------------------------
T ss_pred hCc---ccceecccCceecchhhCCCCCCCEEEEEeeHhhHHHH------------------------------------
Confidence 101 00000000 0000112567789999999999987332
Q ss_pred hHHHHHHhhhhhhccCceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHH
Q 040129 168 DLERFLNNRAKEIVPGGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAV 247 (333)
Q Consensus 168 D~~~FL~~Ra~EL~~GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ 247 (333)
|..=++-|+|||++++.+--.-+..+ . ..+ ..|.+... -.+..+.+++.+.
T Consensus 168 -----L~e~~rvLkpGG~lv~lvkPqfe~~~-~--~~~--------------~~G~vrd~-------~~~~~~~~~v~~~ 218 (291)
T 3hp7_A 168 -----LPALAKILVDGGQVVALVKPQFEAGR-E--QIG--------------KNGIVRES-------SIHEKVLETVTAF 218 (291)
T ss_dssp -----HHHHHHHSCTTCEEEEEECGGGTSCG-G--GCC---------------CCCCCCH-------HHHHHHHHHHHHH
T ss_pred -----HHHHHHHcCcCCEEEEEECcccccCh-h--hcC--------------CCCccCCH-------HHHHHHHHHHHHH
Confidence 22223779999999997411000000 0 000 12444211 1244578999999
Q ss_pred HHhCCcEEEeEEEEeC
Q 040129 248 VERNGNFRIEVMGLTN 263 (333)
Q Consensus 248 ie~~G~F~I~~le~~~ 263 (333)
++..| |.+..+....
T Consensus 219 ~~~~G-f~v~~~~~sp 233 (291)
T 3hp7_A 219 AVDYG-FSVKGLDFSP 233 (291)
T ss_dssp HHHTT-EEEEEEEECS
T ss_pred HHHCC-CEEEEEEECC
Confidence 99999 9988876543
No 125
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=97.02 E-value=0.0012 Score=63.59 Aligned_cols=105 Identities=13% Similarity=0.167 Sum_probs=63.2
Q ss_pred CCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcC-Cccc-cceeeccCccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSL-PQEI-HFFVAGVPGSF 106 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l-~~~~-~~f~~~vpgSF 106 (333)
.+.-+|+|+||++|..++.+.+. + .-+|+.-|.. +.-...+.. .... .--+.-+-|..
T Consensus 62 ~~~~~VLDlGcGtG~ls~~la~~------------g------~~~V~gvD~s--~~~~~a~~~~~~~~~~~~v~~~~~d~ 121 (376)
T 3r0q_C 62 FEGKTVLDVGTGSGILAIWSAQA------------G------ARKVYAVEAT--KMADHARALVKANNLDHIVEVIEGSV 121 (376)
T ss_dssp TTTCEEEEESCTTTHHHHHHHHT------------T------CSEEEEEESS--TTHHHHHHHHHHTTCTTTEEEEESCG
T ss_pred CCCCEEEEeccCcCHHHHHHHhc------------C------CCEEEEEccH--HHHHHHHHHHHHcCCCCeEEEEECch
Confidence 34579999999999888765531 0 1257777764 333332221 1100 00012223333
Q ss_pred ccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceE
Q 040129 107 HKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMI 186 (333)
Q Consensus 107 y~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~m 186 (333)
..-.+| +++|+++|....|++... .++..+|+.+.+=|+|||.|
T Consensus 122 ~~~~~~-~~~D~Iv~~~~~~~l~~e-----------------------------------~~~~~~l~~~~~~LkpgG~l 165 (376)
T 3r0q_C 122 EDISLP-EKVDVIISEWMGYFLLRE-----------------------------------SMFDSVISARDRWLKPTGVM 165 (376)
T ss_dssp GGCCCS-SCEEEEEECCCBTTBTTT-----------------------------------CTHHHHHHHHHHHEEEEEEE
T ss_pred hhcCcC-CcceEEEEcChhhcccch-----------------------------------HHHHHHHHHHHhhCCCCeEE
Confidence 333355 889999997767775421 24566788889999999999
Q ss_pred EEE
Q 040129 187 IIT 189 (333)
Q Consensus 187 vl~ 189 (333)
++.
T Consensus 166 i~~ 168 (376)
T 3r0q_C 166 YPS 168 (376)
T ss_dssp ESS
T ss_pred EEe
Confidence 764
No 126
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=96.96 E-value=0.0014 Score=54.08 Aligned_cols=109 Identities=15% Similarity=0.135 Sum_probs=62.8
Q ss_pred cEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCcccccc-
Q 040129 31 TIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKR- 109 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~r- 109 (333)
.-+|+|+||++|..+..+.+.. . +..+++..|... .- .++ +--+ +.+.+..-
T Consensus 23 ~~~vLd~G~G~G~~~~~l~~~~--------~--------~~~~v~~~D~~~--~~----~~~--~~~~---~~~d~~~~~ 75 (180)
T 1ej0_A 23 GMTVVDLGAAPGGWSQYVVTQI--------G--------GKGRIIACDLLP--MD----PIV--GVDF---LQGDFRDEL 75 (180)
T ss_dssp TCEEEEESCTTCHHHHHHHHHH--------C--------TTCEEEEEESSC--CC----CCT--TEEE---EESCTTSHH
T ss_pred CCeEEEeCCCCCHHHHHHHHHh--------C--------CCCeEEEEECcc--cc----ccC--cEEE---EEcccccch
Confidence 4599999999999887665421 1 123455555433 10 111 1011 12222221
Q ss_pred -------cCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhcc
Q 040129 110 -------LFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVP 182 (333)
Q Consensus 110 -------lfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~ 182 (333)
.+|++++|+++++..+||...... + .. ........+|+.=.+-|+|
T Consensus 76 ~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~---~-------------------~~-----~~~~~~~~~l~~~~~~L~~ 128 (180)
T 1ej0_A 76 VMKALLERVGDSKVQVVMSDMAPNMSGTPAV---D-------------------IP-----RAMYLVELALEMCRDVLAP 128 (180)
T ss_dssp HHHHHHHHHTTCCEEEEEECCCCCCCSCHHH---H-------------------HH-----HHHHHHHHHHHHHHHHEEE
T ss_pred hhhhhhccCCCCceeEEEECCCccccCCCcc---c-------------------hH-----HHHHHHHHHHHHHHHHcCC
Confidence 167889999999999999543110 0 00 0012235566666778999
Q ss_pred CceEEEEecCC
Q 040129 183 GGMIIITNPSI 193 (333)
Q Consensus 183 GG~mvl~~~gr 193 (333)
||.+++.....
T Consensus 129 gG~l~~~~~~~ 139 (180)
T 1ej0_A 129 GGSFVVKVFQG 139 (180)
T ss_dssp EEEEEEEEESS
T ss_pred CcEEEEEEecC
Confidence 99999987653
No 127
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=96.94 E-value=0.004 Score=59.08 Aligned_cols=100 Identities=17% Similarity=0.182 Sum_probs=56.8
Q ss_pred cEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhc-CCcc---ccceeeccCccc
Q 040129 31 TIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTS-LPQE---IHFFVAGVPGSF 106 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~-l~~~---~~~f~~~vpgSF 106 (333)
.-+|+|+||++|..++.+... +.-+|+-.|.. ..-...+. +... .++ ..+-|..
T Consensus 65 ~~~VLDiGcGtG~ls~~la~~------------------g~~~v~gvD~s--~~~~~a~~~~~~~~~~~~i--~~~~~d~ 122 (340)
T 2fyt_A 65 DKVVLDVGCGTGILSMFAAKA------------------GAKKVLGVDQS--EILYQAMDIIRLNKLEDTI--TLIKGKI 122 (340)
T ss_dssp TCEEEEETCTTSHHHHHHHHT------------------TCSEEEEEESS--THHHHHHHHHHHTTCTTTE--EEEESCT
T ss_pred CCEEEEeeccCcHHHHHHHHc------------------CCCEEEEEChH--HHHHHHHHHHHHcCCCCcE--EEEEeeH
Confidence 458999999999887665421 11246666653 12222111 1000 111 1122333
Q ss_pred ccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceE
Q 040129 107 HKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMI 186 (333)
Q Consensus 107 y~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~m 186 (333)
.+--+|.+++|+++|....+-|.. ..++..+|+.+.+-|+|||++
T Consensus 123 ~~~~~~~~~~D~Ivs~~~~~~l~~-----------------------------------~~~~~~~l~~~~~~LkpgG~l 167 (340)
T 2fyt_A 123 EEVHLPVEKVDVIISEWMGYFLLF-----------------------------------ESMLDSVLYAKNKYLAKGGSV 167 (340)
T ss_dssp TTSCCSCSCEEEEEECCCBTTBTT-----------------------------------TCHHHHHHHHHHHHEEEEEEE
T ss_pred HHhcCCCCcEEEEEEcCchhhccC-----------------------------------HHHHHHHHHHHHhhcCCCcEE
Confidence 333467889999999752111110 135567788899999999999
Q ss_pred E
Q 040129 187 I 187 (333)
Q Consensus 187 v 187 (333)
+
T Consensus 168 i 168 (340)
T 2fyt_A 168 Y 168 (340)
T ss_dssp E
T ss_pred E
Confidence 8
No 128
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=96.93 E-value=0.0046 Score=58.26 Aligned_cols=100 Identities=19% Similarity=0.231 Sum_probs=57.3
Q ss_pred cEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcC-Ccc---ccceeeccCccc
Q 040129 31 TIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSL-PQE---IHFFVAGVPGSF 106 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l-~~~---~~~f~~~vpgSF 106 (333)
.-+|+|+||++|..++.+.+. +.-+|+--|.. ..-...+.. ... .++ ..+-|..
T Consensus 39 ~~~VLDiGcGtG~ls~~la~~------------------g~~~v~~vD~s--~~~~~a~~~~~~~~~~~~i--~~~~~d~ 96 (328)
T 1g6q_1 39 DKIVLDVGCGTGILSMFAAKH------------------GAKHVIGVDMS--SIIEMAKELVELNGFSDKI--TLLRGKL 96 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHT------------------CCSEEEEEESS--THHHHHHHHHHHTTCTTTE--EEEESCT
T ss_pred CCEEEEecCccHHHHHHHHHC------------------CCCEEEEEChH--HHHHHHHHHHHHcCCCCCE--EEEECch
Confidence 358999999999887655421 11246666664 222222211 100 011 1122333
Q ss_pred ccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceE
Q 040129 107 HKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMI 186 (333)
Q Consensus 107 y~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~m 186 (333)
-+--+|.+++|+++|....+.|.. ..++..+|..+.+-|+|||++
T Consensus 97 ~~~~~~~~~~D~Ivs~~~~~~l~~-----------------------------------~~~~~~~l~~~~~~LkpgG~l 141 (328)
T 1g6q_1 97 EDVHLPFPKVDIIISEWMGYFLLY-----------------------------------ESMMDTVLYARDHYLVEGGLI 141 (328)
T ss_dssp TTSCCSSSCEEEEEECCCBTTBST-----------------------------------TCCHHHHHHHHHHHEEEEEEE
T ss_pred hhccCCCCcccEEEEeCchhhccc-----------------------------------HHHHHHHHHHHHhhcCCCeEE
Confidence 332367789999999754443211 023456788888999999999
Q ss_pred E
Q 040129 187 I 187 (333)
Q Consensus 187 v 187 (333)
+
T Consensus 142 i 142 (328)
T 1g6q_1 142 F 142 (328)
T ss_dssp E
T ss_pred E
Confidence 7
No 129
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=96.84 E-value=0.0043 Score=53.80 Aligned_cols=20 Identities=10% Similarity=0.257 Sum_probs=16.7
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
.-+|+|+||++|..+..+..
T Consensus 78 ~~~vLdiG~G~G~~~~~l~~ 97 (215)
T 2yxe_A 78 GMKVLEIGTGCGYHAAVTAE 97 (215)
T ss_dssp TCEEEEECCTTSHHHHHHHH
T ss_pred CCEEEEECCCccHHHHHHHH
Confidence 46999999999998877654
No 130
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=96.79 E-value=0.0023 Score=56.24 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=17.0
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
.-+|+|+||++|..+..+..
T Consensus 71 ~~~vLdiG~G~G~~~~~l~~ 90 (231)
T 1vbf_A 71 GQKVLEIGTGIGYYTALIAE 90 (231)
T ss_dssp TCEEEEECCTTSHHHHHHHH
T ss_pred CCEEEEEcCCCCHHHHHHHH
Confidence 45999999999999987764
No 131
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=96.76 E-value=0.0048 Score=54.66 Aligned_cols=20 Identities=15% Similarity=0.199 Sum_probs=16.7
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
.-+|+|+||++|..+..+..
T Consensus 92 ~~~vLdiG~G~G~~~~~la~ 111 (235)
T 1jg1_A 92 GMNILEVGTGSGWNAALISE 111 (235)
T ss_dssp TCCEEEECCTTSHHHHHHHH
T ss_pred CCEEEEEeCCcCHHHHHHHH
Confidence 45899999999999887654
No 132
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=96.75 E-value=0.0016 Score=55.90 Aligned_cols=127 Identities=12% Similarity=0.032 Sum_probs=59.0
Q ss_pred CCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCccccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHK 108 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~ 108 (333)
....+|+|+||++|..++.+... . +..+|+..|.-..=-...=+.+.... .-+..+-+.+..
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~--------~---------~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~~~~d~~~ 90 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALA--------C---------PGVSVTAVDLSMDALAVARRNAERFG-AVVDWAAADGIE 90 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHH--------C---------TTEEEEEEECC--------------------CCHHHHHH
T ss_pred CCCCEEEEecCCHhHHHHHHHHh--------C---------CCCeEEEEECCHHHHHHHHHHHHHhC-CceEEEEcchHh
Confidence 45689999999999988776542 1 22345555553221111111111100 012223334444
Q ss_pred ccCCC-----CceeEEEeccccccccCC---CccccCC-CCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhh
Q 040129 109 RLFPE-----KFLHLVHVSYALHWLSKV---PEGLLDK-NSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKE 179 (333)
Q Consensus 109 rlfP~-----~Sv~~~~Ss~alHWLS~v---P~~l~~~-~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~E 179 (333)
.+|+ +++|+++++-.+|+.... +..+... ...++.. .......+..||+.=.+-
T Consensus 91 -~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~ 153 (215)
T 4dzr_A 91 -WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDG----------------GEDGLQFYRRMAALPPYV 153 (215)
T ss_dssp -HHHHHHHTTCCBSEEEECCCCCC----------------------------------------CTTHHHHHHHTCCGGG
T ss_pred -hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccC----------------CCcHHHHHHHHHHHHHHH
Confidence 4454 899999998777664432 1111100 0000000 001123346788888899
Q ss_pred hccCce-EEEEe
Q 040129 180 IVPGGM-IIITN 190 (333)
Q Consensus 180 L~~GG~-mvl~~ 190 (333)
|+|||+ +++.+
T Consensus 154 LkpgG~l~~~~~ 165 (215)
T 4dzr_A 154 LARGRAGVFLEV 165 (215)
T ss_dssp BCSSSEEEEEEC
T ss_pred hcCCCeEEEEEE
Confidence 999999 55544
No 133
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=96.75 E-value=0.0019 Score=59.92 Aligned_cols=41 Identities=12% Similarity=0.235 Sum_probs=29.8
Q ss_pred CCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEE
Q 040129 113 EKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIIT 189 (333)
Q Consensus 113 ~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~ 189 (333)
.+++|+++|.+.|||+.. + +....|+.=++-|+|||.|++.
T Consensus 211 ~~~fDlI~crnvliyf~~-~-----------------------------------~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 211 PGPFDAIFCRNVMIYFDK-T-----------------------------------TQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp CCCEEEEEECSSGGGSCH-H-----------------------------------HHHHHHHHHGGGEEEEEEEEEC
T ss_pred CCCeeEEEECCchHhCCH-H-----------------------------------HHHHHHHHHHHHhCCCcEEEEE
Confidence 578999999999999643 1 1123344455889999999873
No 134
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=96.73 E-value=0.002 Score=61.01 Aligned_cols=107 Identities=11% Similarity=0.150 Sum_probs=61.9
Q ss_pred EEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCcccccccC
Q 040129 32 IRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKRLF 111 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~rlf 111 (333)
-+|+|+||++|..++.+... .|..+|+..|....=-...=+.+.... .-.-.+.+.++. +
T Consensus 198 ~~VLDlGcG~G~~~~~la~~-----------------~~~~~v~~vD~s~~~l~~a~~~~~~~~-~~~~~~~~d~~~--~ 257 (343)
T 2pjd_A 198 GKVLDVGCGAGVLSVAFARH-----------------SPKIRLTLCDVSAPAVEASRATLAANG-VEGEVFASNVFS--E 257 (343)
T ss_dssp SBCCBTTCTTSHHHHHHHHH-----------------CTTCBCEEEESBHHHHHHHHHHHHHTT-CCCEEEECSTTT--T
T ss_pred CeEEEecCccCHHHHHHHHH-----------------CCCCEEEEEECCHHHHHHHHHHHHHhC-CCCEEEEccccc--c
Confidence 47999999999998776532 122345555542211100000010000 000012334443 2
Q ss_pred CCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEEEec
Q 040129 112 PEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIIITNP 191 (333)
Q Consensus 112 P~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~ 191 (333)
+++++|+++|+..+||.-. ....+...+|+.-.+-|+|||.+++...
T Consensus 258 ~~~~fD~Iv~~~~~~~g~~---------------------------------~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 258 VKGRFDMIISNPPFHDGMQ---------------------------------TSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp CCSCEEEEEECCCCCSSSH---------------------------------HHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred ccCCeeEEEECCCcccCcc---------------------------------CCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 4678999999999998221 0114567788888899999999999763
No 135
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=96.72 E-value=0.0014 Score=63.34 Aligned_cols=108 Identities=13% Similarity=0.115 Sum_probs=56.9
Q ss_pred EEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCcc---ccceeeccCccccc
Q 040129 32 IRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQE---IHFFVAGVPGSFHK 108 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~---~~~f~~~vpgSFy~ 108 (333)
-+|+|+||++|..++.+... .|..+|+..|.-..=-...=+++... ...-+..+-+.++.
T Consensus 224 ~~VLDlGcG~G~~s~~la~~-----------------~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~ 286 (375)
T 4dcm_A 224 GEIVDLGCGNGVIGLTLLDK-----------------NPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS 286 (375)
T ss_dssp SEEEEETCTTCHHHHHHHHH-----------------CTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT
T ss_pred CeEEEEeCcchHHHHHHHHH-----------------CCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc
Confidence 79999999999998877632 12334555554211000000001000 00011222333443
Q ss_pred ccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCceEEE
Q 040129 109 RLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGMIII 188 (333)
Q Consensus 109 rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl 188 (333)
-+|++++|+++|+-.+|+...++... ...||+.=.+-|+|||++++
T Consensus 287 -~~~~~~fD~Ii~nppfh~~~~~~~~~---------------------------------~~~~l~~~~~~LkpgG~l~i 332 (375)
T 4dcm_A 287 -GVEPFRFNAVLCNPPFHQQHALTDNV---------------------------------AWEMFHHARRCLKINGELYI 332 (375)
T ss_dssp -TCCTTCEEEEEECCCC-------CCH---------------------------------HHHHHHHHHHHEEEEEEEEE
T ss_pred -cCCCCCeeEEEECCCcccCcccCHHH---------------------------------HHHHHHHHHHhCCCCcEEEE
Confidence 35778999999999999854433221 11355555677999999999
Q ss_pred Ee
Q 040129 189 TN 190 (333)
Q Consensus 189 ~~ 190 (333)
+.
T Consensus 333 v~ 334 (375)
T 4dcm_A 333 VA 334 (375)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 136
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=96.69 E-value=0.013 Score=53.23 Aligned_cols=124 Identities=10% Similarity=0.187 Sum_probs=62.5
Q ss_pred cEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCcc--ccceeeccCccccc
Q 040129 31 TIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQE--IHFFVAGVPGSFHK 108 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~--~~~f~~~vpgSFy~ 108 (333)
..+|+|+||++|..++.+... .|..+|+..|.-..=-...=++.... .+ +..+-+.+..
T Consensus 110 ~~~vLDlG~GsG~~~~~la~~-----------------~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~--v~~~~~d~~~ 170 (276)
T 2b3t_A 110 PCRILDLGTGTGAIALALASE-----------------RPDCEIIAVDRMPDAVSLAQRNAQHLAIKN--IHILQSDWFS 170 (276)
T ss_dssp CCEEEEETCTTSHHHHHHHHH-----------------CTTSEEEEECSSHHHHHHHHHHHHHHTCCS--EEEECCSTTG
T ss_pred CCEEEEecCCccHHHHHHHHh-----------------CCCCEEEEEECCHHHHHHHHHHHHHcCCCc--eEEEEcchhh
Confidence 468999999999988876532 01233444443211111000000000 01 1112223332
Q ss_pred ccCCCCceeEEEeccccccccC--CCccccC-CCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCce
Q 040129 109 RLFPEKFLHLVHVSYALHWLSK--VPEGLLD-KNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGGM 185 (333)
Q Consensus 109 rlfP~~Sv~~~~Ss~alHWLS~--vP~~l~~-~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~ 185 (333)
.+|++++|+++|+...+|... .+..+.. ....++..| ...-.++..+++.=.+-|+|||.
T Consensus 171 -~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~----------------~~g~~~~~~~l~~~~~~LkpgG~ 233 (276)
T 2b3t_A 171 -ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAA----------------DSGMADIVHIIEQSRNALVSGGF 233 (276)
T ss_dssp -GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCH----------------HHHTHHHHHHHHHHGGGEEEEEE
T ss_pred -hcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCC----------------CcHHHHHHHHHHHHHHhcCCCCE
Confidence 245678999999988887654 0111111 000011100 11124556777777788999999
Q ss_pred EEEEe
Q 040129 186 IIITN 190 (333)
Q Consensus 186 mvl~~ 190 (333)
+++..
T Consensus 234 l~~~~ 238 (276)
T 2b3t_A 234 LLLEH 238 (276)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 99974
No 137
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=96.69 E-value=0.0012 Score=59.94 Aligned_cols=19 Identities=21% Similarity=0.190 Sum_probs=15.5
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
.-+|+|+||++|..++.+.
T Consensus 121 ~~~VLDiGcG~G~l~~~la 139 (254)
T 2nxc_A 121 GDKVLDLGTGSGVLAIAAE 139 (254)
T ss_dssp TCEEEEETCTTSHHHHHHH
T ss_pred CCEEEEecCCCcHHHHHHH
Confidence 4689999999998876543
No 138
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=96.68 E-value=0.017 Score=47.94 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=16.5
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
.-+|+|+||++|..++.+.
T Consensus 36 ~~~vLdiG~G~G~~~~~l~ 54 (183)
T 2yxd_A 36 DDVVVDVGCGSGGMTVEIA 54 (183)
T ss_dssp TCEEEEESCCCSHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHH
Confidence 4699999999999888775
No 139
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=96.65 E-value=0.011 Score=50.46 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=18.2
Q ss_pred hHHHHHHhhhhhhccCceEEEEec
Q 040129 168 DLERFLNNRAKEIVPGGMIIITNP 191 (333)
Q Consensus 168 D~~~FL~~Ra~EL~~GG~mvl~~~ 191 (333)
|...+|+.=.+-|+|||++++...
T Consensus 117 ~~~~~l~~~~~~Lk~gG~l~~~~~ 140 (197)
T 3eey_A 117 TTIQALSKAMELLVTGGIITVVIY 140 (197)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cHHHHHHHHHHhCcCCCEEEEEEc
Confidence 344467766788999999998864
No 140
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=96.64 E-value=0.016 Score=57.21 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=18.0
Q ss_pred CcEEEEeecCCCCcccHHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~ 50 (333)
..-+|+|+||++|..++.+..
T Consensus 242 ~g~~VLDLGCGsG~la~~LA~ 262 (433)
T 1u2z_A 242 KGDTFMDLGSGVGNCVVQAAL 262 (433)
T ss_dssp TTCEEEEESCTTSHHHHHHHH
T ss_pred CCCEEEEeCCCcCHHHHHHHH
Confidence 457999999999999988765
No 141
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=96.61 E-value=0.011 Score=49.34 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHH
Q 040129 7 TKDHIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 7 ~~~~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~ 49 (333)
+.+.+.+.+.+.+.. ...-+|+|+||++|..++.+.
T Consensus 17 ~~~~~~~~~~~~~~~-------~~~~~vldiG~G~G~~~~~l~ 52 (192)
T 1l3i_A 17 TAMEVRCLIMCLAEP-------GKNDVAVDVGCGTGGVTLELA 52 (192)
T ss_dssp CCHHHHHHHHHHHCC-------CTTCEEEEESCTTSHHHHHHH
T ss_pred ChHHHHHHHHHhcCC-------CCCCEEEEECCCCCHHHHHHH
Confidence 344555555544432 334699999999999888776
No 142
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=96.61 E-value=0.0082 Score=54.11 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=20.9
Q ss_pred HhHHHHHHhhhhhhccCceEEEEe
Q 040129 167 KDLERFLNNRAKEIVPGGMIIITN 190 (333)
Q Consensus 167 ~D~~~FL~~Ra~EL~~GG~mvl~~ 190 (333)
.++..||+.=++=|+|||++++..
T Consensus 153 ~~~~~~l~~~~~~LkpgG~l~~~~ 176 (259)
T 3lpm_A 153 CTLEDTIRVAASLLKQGGKANFVH 176 (259)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHccCCcEEEEEE
Confidence 567788888889999999999975
No 143
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=96.57 E-value=0.0011 Score=56.71 Aligned_cols=116 Identities=18% Similarity=0.186 Sum_probs=63.5
Q ss_pred cEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeecc-Cccccc-
Q 040129 31 TIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGV-PGSFHK- 108 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~v-pgSFy~- 108 (333)
.-+|+|+||++|..++.+... +.........+.-+|+-.|+...- .++ ++ ..+ .+.+..
T Consensus 23 ~~~vLDlGcG~G~~~~~la~~--------~~~~~~~~~~~~~~v~~vD~s~~~------~~~---~~--~~~~~~d~~~~ 83 (196)
T 2nyu_A 23 GLRVLDCGAAPGAWSQVAVQK--------VNAAGTDPSSPVGFVLGVDLLHIF------PLE---GA--TFLCPADVTDP 83 (196)
T ss_dssp TCEEEEETCCSCHHHHHHHHH--------TTTTCCCTTSCCCEEEEECSSCCC------CCT---TC--EEECSCCTTSH
T ss_pred CCEEEEeCCCCCHHHHHHHHH--------hccccccccCCCceEEEEechhcc------cCC---CC--eEEEeccCCCH
Confidence 469999999999988766532 211000011233567777765420 011 11 111 233322
Q ss_pred -------ccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhc
Q 040129 109 -------RLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIV 181 (333)
Q Consensus 109 -------rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 181 (333)
..+|.+++|+++|..++||.-. ...+ + .........+|+.=.+-|+
T Consensus 84 ~~~~~~~~~~~~~~fD~V~~~~~~~~~~~---~~~~-----------------~-------~~~~~~~~~~l~~~~~~Lk 136 (196)
T 2nyu_A 84 RTSQRILEVLPGRRADVILSDMAPNATGF---RDLD-----------------H-------DRLISLCLTLLSVTPDILQ 136 (196)
T ss_dssp HHHHHHHHHSGGGCEEEEEECCCCCCCSC---HHHH-----------------H-------HHHHHHHHHHHHHHHHHEE
T ss_pred HHHHHHHHhcCCCCCcEEEeCCCCCCCCC---cccC-----------------H-------HHHHHHHHHHHHHHHHHhc
Confidence 1256789999999877776311 0000 0 0011223455666678899
Q ss_pred cCceEEEEecC
Q 040129 182 PGGMIIITNPS 192 (333)
Q Consensus 182 ~GG~mvl~~~g 192 (333)
|||++++....
T Consensus 137 pgG~lv~~~~~ 147 (196)
T 2nyu_A 137 PGGTFLCKTWA 147 (196)
T ss_dssp EEEEEEEEECC
T ss_pred CCCEEEEEecC
Confidence 99999998653
No 144
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=96.54 E-value=0.011 Score=52.61 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=19.0
Q ss_pred HHHHHHHHhCCcEEEeEEEEeC
Q 040129 242 GEFGAVVERNGNFRIEVMGLTN 263 (333)
Q Consensus 242 ~E~~~~ie~~G~F~I~~le~~~ 263 (333)
+|+.+.+++.| |+|..++.+.
T Consensus 166 ~el~~~l~~aG-f~v~~~~~~~ 186 (225)
T 3p2e_A 166 EQYKAELSNSG-FRIDDVKELD 186 (225)
T ss_dssp HHHHHHHHHHT-CEEEEEEEEC
T ss_pred HHHHHHHHHcC-CCeeeeeecC
Confidence 47999999999 9999999986
No 145
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=96.49 E-value=0.011 Score=53.59 Aligned_cols=61 Identities=16% Similarity=0.197 Sum_probs=33.7
Q ss_pred cCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHH-HHHHhHHHHHHhhhhhhccCceEEE
Q 040129 110 LFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYAN-QFAKDLERFLNNRAKEIVPGGMIII 188 (333)
Q Consensus 110 lfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~-Q~~~D~~~FL~~Ra~EL~~GG~mvl 188 (333)
.+|++++|+++|+-.+++... .. .+...++.+. ....++..||+.=++-|+|||++++
T Consensus 110 ~~~~~~fD~Vv~nPPy~~~~~----~~-----------------~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~ 168 (260)
T 2ozv_A 110 GLPDEHFHHVIMNPPYNDAGD----RR-----------------TPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSL 168 (260)
T ss_dssp TCCTTCEEEEEECCCC------------------------------------------CCHHHHHHHHHHHEEEEEEEEE
T ss_pred ccCCCCcCEEEECCCCcCCCC----CC-----------------CcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEE
Confidence 367789999999866665321 00 0001111111 1123477788888899999999999
Q ss_pred Eec
Q 040129 189 TNP 191 (333)
Q Consensus 189 ~~~ 191 (333)
...
T Consensus 169 ~~~ 171 (260)
T 2ozv_A 169 ISR 171 (260)
T ss_dssp EEC
T ss_pred EEc
Confidence 763
No 146
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=96.49 E-value=0.0063 Score=51.15 Aligned_cols=19 Identities=16% Similarity=-0.039 Sum_probs=16.4
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
.-+|+|+||++|..++.++
T Consensus 45 ~~~vLD~GcG~G~~~~~~~ 63 (187)
T 2fhp_A 45 GGMALDLYSGSGGLAIEAV 63 (187)
T ss_dssp SCEEEETTCTTCHHHHHHH
T ss_pred CCCEEEeCCccCHHHHHHH
Confidence 4689999999999998765
No 147
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=96.47 E-value=0.01 Score=51.55 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=16.0
Q ss_pred EEEEeecCCCCcccHHHH
Q 040129 32 IRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~ 49 (333)
-+|+|+||++|..++.++
T Consensus 55 ~~vLDlGcGtG~~~~~~~ 72 (201)
T 2ift_A 55 SECLDGFAGSGSLGFEAL 72 (201)
T ss_dssp CEEEETTCTTCHHHHHHH
T ss_pred CeEEEcCCccCHHHHHHH
Confidence 589999999999998755
No 148
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=96.44 E-value=0.011 Score=55.03 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=16.7
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
.-+|+|+||++|..++.+..
T Consensus 76 ~~~VLDiGcG~G~~~~~la~ 95 (317)
T 1dl5_A 76 GMRVLEIGGGTGYNAAVMSR 95 (317)
T ss_dssp TCEEEEECCTTSHHHHHHHH
T ss_pred cCEEEEecCCchHHHHHHHH
Confidence 46999999999998877654
No 149
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=96.41 E-value=0.0074 Score=49.83 Aligned_cols=19 Identities=21% Similarity=0.097 Sum_probs=16.5
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
.-+|+|+||++|..++.+.
T Consensus 42 ~~~vLD~GcG~G~~~~~l~ 60 (171)
T 1ws6_A 42 RGRFLDPFAGSGAVGLEAA 60 (171)
T ss_dssp CCEEEEETCSSCHHHHHHH
T ss_pred CCeEEEeCCCcCHHHHHHH
Confidence 4689999999999988776
No 150
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=96.39 E-value=0.017 Score=50.11 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=16.4
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
.-+|+|+||++|..++.++
T Consensus 55 ~~~vLDlgcG~G~~~~~l~ 73 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEAL 73 (202)
T ss_dssp TCEEEETTCTTCHHHHHHH
T ss_pred CCeEEEeCCCcCHHHHHHH
Confidence 3589999999999998765
No 151
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=96.39 E-value=0.013 Score=49.13 Aligned_cols=19 Identities=21% Similarity=0.111 Sum_probs=16.4
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
.-+|+|+||++|..++.+.
T Consensus 32 ~~~vLDlGcG~G~~~~~l~ 50 (177)
T 2esr_A 32 GGRVLDLFAGSGGLAIEAV 50 (177)
T ss_dssp SCEEEEETCTTCHHHHHHH
T ss_pred CCeEEEeCCCCCHHHHHHH
Confidence 4589999999999988765
No 152
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=96.38 E-value=0.04 Score=47.91 Aligned_cols=46 Identities=15% Similarity=0.084 Sum_probs=30.2
Q ss_pred cEEEEeecCCCCcccHHHHH------------HHHHHHHHHhhhcCCCCCCC-cceEEecCCC
Q 040129 31 TIRLADCGCAVGPNTFNAMQ------------DLIEIVKHKYKSQCPNSQNP-EFHVSFNDQS 80 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~------------~ii~~i~~~~~~~~~~~~~~-~~~v~~nDlP 80 (333)
.-+|+|+||++|..++.+.. ..++..++.....+ .+ .++++..|.+
T Consensus 56 ~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g----~~~~v~~~~~d~~ 114 (204)
T 3njr_A 56 GELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYG----LSPRMRAVQGTAP 114 (204)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEESCTT
T ss_pred CCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC----CCCCEEEEeCchh
Confidence 46899999999999988763 45555555544432 22 4666666654
No 153
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=96.38 E-value=0.0011 Score=58.80 Aligned_cols=72 Identities=15% Similarity=0.036 Sum_probs=43.9
Q ss_pred cEEEEeecCCCCcccHHHHH------------HHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccce
Q 040129 31 TIRLADCGCAVGPNTFNAMQ------------DLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFF 98 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~------------~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f 98 (333)
.-+|+|+||++|..++.+.. ..++..++.....+. .+.+++...|
T Consensus 79 ~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~~~d-------------------- 135 (241)
T 3gdh_A 79 CDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGI---ADKIEFICGD-------------------- 135 (241)
T ss_dssp CSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC---GGGEEEEESC--------------------
T ss_pred CCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCC---CcCeEEEECC--------------------
Confidence 46899999999999988763 333333333332110 0223333333
Q ss_pred eeccCcccccccCCCCceeEEEeccccccccCCCc
Q 040129 99 VAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPE 133 (333)
Q Consensus 99 ~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~ 133 (333)
+..- .|++++|+++++..+||......
T Consensus 136 -------~~~~-~~~~~~D~v~~~~~~~~~~~~~~ 162 (241)
T 3gdh_A 136 -------FLLL-ASFLKADVVFLSPPWGGPDYATA 162 (241)
T ss_dssp -------HHHH-GGGCCCSEEEECCCCSSGGGGGS
T ss_pred -------hHHh-cccCCCCEEEECCCcCCcchhhh
Confidence 2211 15678999999999999766443
No 154
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=96.37 E-value=0.033 Score=49.05 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=17.9
Q ss_pred CcEEEEeecCCCCcccHHHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAMQD 51 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ 51 (333)
..-+|+|+||++|..++.+.+.
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~ 95 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADI 95 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHH
T ss_pred CCCEEEEEcccCCHHHHHHHHH
Confidence 3468999999999998876643
No 155
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=96.32 E-value=0.024 Score=48.60 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=16.9
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
.-+|+|+||++|..++.+..
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~ 85 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSI 85 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHH
Confidence 35899999999999987763
No 156
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=96.32 E-value=0.0029 Score=55.53 Aligned_cols=20 Identities=25% Similarity=0.147 Sum_probs=16.3
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
.-+|+|+||++|..+..+..
T Consensus 81 ~~~VLdiG~G~G~~~~~la~ 100 (227)
T 2pbf_A 81 GSRAIDVGSGSGYLTVCMAI 100 (227)
T ss_dssp TCEEEEESCTTSHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHH
Confidence 46999999999988876653
No 157
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=96.28 E-value=0.023 Score=52.90 Aligned_cols=21 Identities=14% Similarity=0.055 Sum_probs=17.5
Q ss_pred CCcEEEEeecCCCCcccHHHH
Q 040129 29 SNTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~ 49 (333)
+++-+|+|+||++|..+..+.
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~ 114 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVL 114 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHH
Confidence 445799999999999887765
No 158
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=96.25 E-value=0.006 Score=59.12 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=17.4
Q ss_pred hHHHHHHhhhhhhccCceEE
Q 040129 168 DLERFLNNRAKEIVPGGMII 187 (333)
Q Consensus 168 D~~~FL~~Ra~EL~~GG~mv 187 (333)
.+..+|.+|.+=|+|||+|+
T Consensus 167 ~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 167 MLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp SHHHHHHHHHHHEEEEEEEE
T ss_pred hhhhHHHHHHhhCCCCceEC
Confidence 46678999999999999987
No 159
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=96.25 E-value=0.039 Score=49.12 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=17.9
Q ss_pred HhHHHHHHhhhhhhccCceEEEE
Q 040129 167 KDLERFLNNRAKEIVPGGMIIIT 189 (333)
Q Consensus 167 ~D~~~FL~~Ra~EL~~GG~mvl~ 189 (333)
.|...||+.=++=|||||+|+..
T Consensus 147 ~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 147 HQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp HHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cchhhhhhhhhheeCCCCEEEEE
Confidence 45666777777899999999753
No 160
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=96.21 E-value=0.011 Score=52.01 Aligned_cols=20 Identities=25% Similarity=0.222 Sum_probs=16.8
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
.-+|+|+||++|..+..+..
T Consensus 85 ~~~VLdiG~G~G~~~~~la~ 104 (227)
T 1r18_A 85 GARILDVGSGSGYLTACFYR 104 (227)
T ss_dssp TCEEEEESCTTSHHHHHHHH
T ss_pred CCEEEEECCCccHHHHHHHH
Confidence 46999999999999887654
No 161
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=96.19 E-value=0.017 Score=51.51 Aligned_cols=21 Identities=14% Similarity=-0.195 Sum_probs=17.6
Q ss_pred CcEEEEeecCCCCcccHHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~ 50 (333)
...+|+|+||++|..++.+..
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~ 85 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGA 85 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHH
T ss_pred CCCEEEEeCCChhHHHHHHHH
Confidence 456999999999999887764
No 162
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=96.11 E-value=0.016 Score=50.89 Aligned_cols=20 Identities=20% Similarity=0.184 Sum_probs=16.3
Q ss_pred CcEEEEeecCCCCcccHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~ 49 (333)
..-+|+|+||++|..+..+.
T Consensus 57 ~g~~VLDlGcGtG~~~~~la 76 (210)
T 1nt2_A 57 GDERVLYLGAASGTTVSHLA 76 (210)
T ss_dssp SSCEEEEETCTTSHHHHHHH
T ss_pred CCCEEEEECCcCCHHHHHHH
Confidence 34689999999999887654
No 163
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=96.11 E-value=0.029 Score=49.72 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=17.0
Q ss_pred CcEEEEeecCCCCcccHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~ 49 (333)
..-+|+|+||++|..++.+.
T Consensus 70 ~~~~vLDiG~G~G~~~~~la 89 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIK 89 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHH
T ss_pred CCCEEEEecCCCCHHHHHHH
Confidence 34699999999999988765
No 164
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=95.96 E-value=0.015 Score=51.83 Aligned_cols=21 Identities=19% Similarity=0.048 Sum_probs=17.3
Q ss_pred CcEEEEeecCCCCcccHHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~ 50 (333)
...+|.|+||++|..++.+..
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~ 71 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGL 71 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHH
Confidence 468999999999987776654
No 165
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=95.94 E-value=0.094 Score=48.95 Aligned_cols=20 Identities=10% Similarity=0.119 Sum_probs=17.1
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
.-+|+|+||++|..++.+..
T Consensus 106 g~~VLDiG~G~G~~~~~la~ 125 (336)
T 2b25_A 106 GDTVLEAGSGSGGMSLFLSK 125 (336)
T ss_dssp TCEEEEECCTTSHHHHHHHH
T ss_pred CCEEEEeCCCcCHHHHHHHH
Confidence 46999999999999987764
No 166
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=95.88 E-value=0.03 Score=48.83 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=17.2
Q ss_pred CcEEEEeecCCCCcccHHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~ 50 (333)
..-+|+|+||++|..+..+..
T Consensus 77 ~~~~vLDiG~G~G~~~~~la~ 97 (226)
T 1i1n_A 77 EGAKALDVGSGSGILTACFAR 97 (226)
T ss_dssp TTCEEEEETCTTSHHHHHHHH
T ss_pred CCCEEEEEcCCcCHHHHHHHH
Confidence 346999999999999877653
No 167
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=95.88 E-value=0.051 Score=47.42 Aligned_cols=19 Identities=11% Similarity=0.121 Sum_probs=16.6
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
.-+|+|+||++|..|+.+.
T Consensus 59 ~~~vLdiG~G~G~~~~~la 77 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMA 77 (221)
T ss_dssp CSEEEEECCTTSHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHH
Confidence 4689999999999998766
No 168
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=95.88 E-value=0.031 Score=50.11 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=17.0
Q ss_pred CcEEEEeecCCCCcccHHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~ 50 (333)
..-+|+|+||++|..+..+..
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~ 105 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFAD 105 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHH
Confidence 346899999999999876653
No 169
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=95.86 E-value=0.031 Score=52.89 Aligned_cols=101 Identities=11% Similarity=0.239 Sum_probs=60.1
Q ss_pred CCcEEEEeecCCCCcccHHHHH--------------HHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCcc
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQ--------------DLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQE 94 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~--------------~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~ 94 (333)
+++.+|+|+||++|..+..+.. .+|+..++.... ...+.++++..|.
T Consensus 88 p~~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~----~~~~rv~v~~~Da--------------- 148 (317)
T 3gjy_A 88 ASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDI----PRAPRVKIRVDDA--------------- 148 (317)
T ss_dssp GGGCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCC----CCTTTEEEEESCH---------------
T ss_pred CCCCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccc----cCCCceEEEECcH---------------
Confidence 5578999999999988877664 233333333211 0123344444442
Q ss_pred ccceeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHH
Q 040129 95 IHFFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLN 174 (333)
Q Consensus 95 ~~~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~ 174 (333)
..|-.+ +|.+++|++++....|| ..|..+.. ..|++
T Consensus 149 ---------~~~l~~-~~~~~fDvIi~D~~~~~--~~~~~L~t--------------------------------~efl~ 184 (317)
T 3gjy_A 149 ---------RMVAES-FTPASRDVIIRDVFAGA--ITPQNFTT--------------------------------VEFFE 184 (317)
T ss_dssp ---------HHHHHT-CCTTCEEEEEECCSTTS--CCCGGGSB--------------------------------HHHHH
T ss_pred ---------HHHHhh-ccCCCCCEEEECCCCcc--ccchhhhH--------------------------------HHHHH
Confidence 111111 35678999999877776 23333221 23455
Q ss_pred hhhhhhccCceEEEEecC
Q 040129 175 NRAKEIVPGGMIIITNPS 192 (333)
Q Consensus 175 ~Ra~EL~~GG~mvl~~~g 192 (333)
.=.+-|+|||.|++....
T Consensus 185 ~~~r~LkpgGvlv~~~~~ 202 (317)
T 3gjy_A 185 HCHRGLAPGGLYVANCGD 202 (317)
T ss_dssp HHHHHEEEEEEEEEEEEE
T ss_pred HHHHhcCCCcEEEEEecC
Confidence 555889999999998854
No 170
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=95.77 E-value=0.023 Score=53.22 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=17.4
Q ss_pred CCcEEEEeecCCCCcccHHHH
Q 040129 29 SNTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~ 49 (333)
+++-+|+|+||++|..+..+.
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~ 96 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVL 96 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHT
T ss_pred CCCCeEEEEcCCcCHHHHHHH
Confidence 345799999999999887765
No 171
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=95.73 E-value=0.17 Score=44.74 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=17.3
Q ss_pred CcEEEEeecCCCCcccHHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~ 50 (333)
..-+|+|+||++|..++.+..
T Consensus 93 ~~~~vldiG~G~G~~~~~l~~ 113 (255)
T 3mb5_A 93 PGDFIVEAGVGSGALTLFLAN 113 (255)
T ss_dssp TTCEEEEECCTTSHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHH
Confidence 356899999999998877664
No 172
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=95.70 E-value=0.03 Score=53.03 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=15.9
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
.-+|+|+||++|..++.+.
T Consensus 51 ~~~VLDiGcGtG~ls~~la 69 (348)
T 2y1w_A 51 DKIVLDVGCGSGILSFFAA 69 (348)
T ss_dssp TCEEEEETCTTSHHHHHHH
T ss_pred cCEEEEcCCCccHHHHHHH
Confidence 4699999999999887654
No 173
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=95.69 E-value=0.007 Score=56.13 Aligned_cols=108 Identities=14% Similarity=0.119 Sum_probs=74.1
Q ss_pred CCcEEEEeecCCCCcccHHHH--------------HHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCcc
Q 040129 29 SNTIRLADCGCAVGPNTFNAM--------------QDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQE 94 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~--------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~ 94 (333)
+.+-+|.|+||+.||-|+.++ ...++.+++.....+ +.+.+-+.|++..+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g-----~~~~~~v~D~~~~~----------- 194 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLN-----VPHRTNVADLLEDR----------- 194 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTT-----CCEEEEECCTTTSC-----------
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcC-----CCceEEEeeecccC-----------
Confidence 447799999999999999886 567888887766543 34777888877654
Q ss_pred ccceeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeec-------CCCHHHHHHHHHHHHH
Q 040129 95 IHFFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYA-------FAPEVVVKAYANQFAK 167 (333)
Q Consensus 95 ~~~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~-------~~~~~v~~ay~~Q~~~ 167 (333)
|....|++.++=++|-|.+-.++..=+---++|.+.|.++ +.++...+-|..+|++
T Consensus 195 -----------------p~~~~DvaL~lkti~~Le~q~kg~g~~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~ 257 (281)
T 3lcv_B 195 -----------------LDEPADVTLLLKTLPCLETQQRGSGWEVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFES 257 (281)
T ss_dssp -----------------CCSCCSEEEETTCHHHHHHHSTTHHHHHHHHSSCSEEEEEEECC-------CHHHHHHHHHHH
T ss_pred -----------------CCCCcchHHHHHHHHHhhhhhhHHHHHHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHH
Confidence 5666999999999999976443211011224566677776 1256777777777665
Q ss_pred hH
Q 040129 168 DL 169 (333)
Q Consensus 168 D~ 169 (333)
+.
T Consensus 258 ~~ 259 (281)
T 3lcv_B 258 QA 259 (281)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 174
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=95.61 E-value=0.083 Score=46.31 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=16.7
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
.-+|+|+||++|..++.+..
T Consensus 55 ~~~vLdiG~G~G~~~~~la~ 74 (233)
T 2gpy_A 55 PARILEIGTAIGYSAIRMAQ 74 (233)
T ss_dssp CSEEEEECCTTSHHHHHHHH
T ss_pred CCEEEEecCCCcHHHHHHHH
Confidence 35899999999999887654
No 175
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=95.44 E-value=0.052 Score=50.93 Aligned_cols=21 Identities=19% Similarity=-0.094 Sum_probs=16.7
Q ss_pred CCcEEEEeecCCCCcccHHHH
Q 040129 29 SNTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~ 49 (333)
...-+|+|+||++|+-|...+
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~l 141 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILL 141 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHH
T ss_pred CCcCEEEEECCCccHHHHHHH
Confidence 446799999999998775554
No 176
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=95.43 E-value=0.064 Score=52.55 Aligned_cols=127 Identities=13% Similarity=0.185 Sum_probs=68.1
Q ss_pred CCcEEEEeecCC------CCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccc-eeec
Q 040129 29 SNTIRLADCGCA------VGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHF-FVAG 101 (333)
Q Consensus 29 ~~~~~IaD~GCs------~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~-f~~~ 101 (333)
.++.+|+|+||+ +|..|+.++.. + .|..+|+--|+-.+- .+ ...++ |..
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~--------~--------fP~a~V~GVDiSp~m---~~----~~~rI~fv~- 270 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKS--------F--------FPRGQIYGLDIMDKS---HV----DELRIRTIQ- 270 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHH--------H--------CTTCEEEEEESSCCG---GG----CBTTEEEEE-
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHH--------h--------CCCCEEEEEECCHHH---hh----cCCCcEEEE-
Confidence 346899999999 77877765532 1 123456777764441 11 11111 211
Q ss_pred cCcccccccCC------CCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHh
Q 040129 102 VPGSFHKRLFP------EKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNN 175 (333)
Q Consensus 102 vpgSFy~rlfP------~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~ 175 (333)
|...+--|+ .+++|+++|..+ ||. .|...+|+.
T Consensus 271 --GDa~dlpf~~~l~~~d~sFDlVisdgs-H~~--------------------------------------~d~~~aL~e 309 (419)
T 3sso_A 271 --GDQNDAEFLDRIARRYGPFDIVIDDGS-HIN--------------------------------------AHVRTSFAA 309 (419)
T ss_dssp --CCTTCHHHHHHHHHHHCCEEEEEECSC-CCH--------------------------------------HHHHHHHHH
T ss_pred --ecccccchhhhhhcccCCccEEEECCc-ccc--------------------------------------hhHHHHHHH
Confidence 222221133 578999999765 542 122334555
Q ss_pred hhhhhccCceEEEEecCCCC----CCCC-ccchhhHHHHHHHHHHHHHHh
Q 040129 176 RAKEIVPGGMIIITNPSIPD----GMPF-SEIANGLMYNCMGTILYDMVK 220 (333)
Q Consensus 176 Ra~EL~~GG~mvl~~~gr~~----~~~~-~~~~~~~~~~~l~~~l~~mv~ 220 (333)
=.+-|+|||++++.-+-..- +... .......+.+.+++.+.++-.
T Consensus 310 l~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~tii~~lk~l~D~l~~ 359 (419)
T 3sso_A 310 LFPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLGLLKSLIDAIQH 359 (419)
T ss_dssp HGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTSHHHHHHHHHHHHTG
T ss_pred HHHhcCCCeEEEEEecccccCcccCCCccCCcchhHHHHHHHHHHHHhcc
Confidence 55899999999997432110 0000 000123456777777666643
No 177
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=95.42 E-value=0.11 Score=46.17 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=17.8
Q ss_pred CcEEEEeecCCCCcccHHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~ 50 (333)
+.-+|+|+||++|..++.+..
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~ 69 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSP 69 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHH
T ss_pred CCCEEEEEcCCCCHHHHHHHH
Confidence 457999999999999987763
No 178
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=95.41 E-value=0.051 Score=48.99 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHHH
Q 040129 10 HIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 10 ~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~ 50 (333)
.+..+|...++... .....+|+|+||++|..|..+.+
T Consensus 60 kla~~ll~~l~~~~----l~~g~~VLDlG~GtG~~t~~la~ 96 (232)
T 3id6_C 60 KLAGAILKGLKTNP----IRKGTKVLYLGAASGTTISHVSD 96 (232)
T ss_dssp HHHHHHHTTCSCCS----CCTTCEEEEETCTTSHHHHHHHH
T ss_pred HHHHHHHhhhhhcC----CCCCCEEEEEeecCCHHHHHHHH
Confidence 44455544443221 23358999999999998866543
No 179
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=95.38 E-value=0.066 Score=56.96 Aligned_cols=98 Identities=9% Similarity=0.060 Sum_probs=59.0
Q ss_pred cEEEEeecCCCCcccHHHH---------------HHHHHHHHHHhhhcCC--CCCCCcceEEecCCCCCchHHHhhcCCc
Q 040129 31 TIRLADCGCAVGPNTFNAM---------------QDLIEIVKHKYKSQCP--NSQNPEFHVSFNDQSSNDFNTLFTSLPQ 93 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~---------------~~ii~~i~~~~~~~~~--~~~~~~~~v~~nDlP~NDFn~lF~~l~~ 93 (333)
.-+|+|+||++|..++.+. ...++..+++...... ....+.++++..|+-.
T Consensus 722 g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~d------------ 789 (950)
T 3htx_A 722 ASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILE------------ 789 (950)
T ss_dssp CSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTS------------
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHh------------
Confidence 4699999999999887664 2233333332221100 0012344555544432
Q ss_pred cccceeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHH
Q 040129 94 EIHFFVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFL 173 (333)
Q Consensus 94 ~~~~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL 173 (333)
--++.+++|++++..++||+.. .+...||
T Consensus 790 ---------------Lp~~d~sFDlVV~~eVLeHL~d------------------------------------p~l~~~L 818 (950)
T 3htx_A 790 ---------------FDSRLHDVDIGTCLEVIEHMEE------------------------------------DQACEFG 818 (950)
T ss_dssp ---------------CCTTSCSCCEEEEESCGGGSCH------------------------------------HHHHHHH
T ss_pred ---------------CCcccCCeeEEEEeCchhhCCh------------------------------------HHHHHHH
Confidence 2346788999999999999543 1223345
Q ss_pred HhhhhhhccCceEEEEecC
Q 040129 174 NNRAKEIVPGGMIIITNPS 192 (333)
Q Consensus 174 ~~Ra~EL~~GG~mvl~~~g 192 (333)
+.=.+-|+|| .+++..+.
T Consensus 819 ~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 819 EKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp HHHHHTTCCS-EEEEEECB
T ss_pred HHHHHHcCCC-EEEEEecC
Confidence 5556889999 77777654
No 180
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=95.35 E-value=0.027 Score=50.88 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=17.7
Q ss_pred CCcEEEEeecCCCCcccHHHH
Q 040129 29 SNTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~ 49 (333)
...-+|+|+||++|..++.+.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la 99 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLK 99 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHH
T ss_pred CCCCEEEEEcCCCCHHHHHHH
Confidence 346799999999999998765
No 181
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=95.26 E-value=0.076 Score=46.64 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=17.0
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
.-+|+|+||++|..+..+.+
T Consensus 78 ~~~vLDlG~G~G~~~~~la~ 97 (233)
T 2ipx_A 78 GAKVLYLGAASGTTVSHVSD 97 (233)
T ss_dssp TCEEEEECCTTSHHHHHHHH
T ss_pred CCEEEEEcccCCHHHHHHHH
Confidence 46999999999998877664
No 182
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=95.26 E-value=0.069 Score=47.14 Aligned_cols=19 Identities=16% Similarity=0.321 Sum_probs=16.5
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
.-+|+|+||++|..++.+.
T Consensus 72 ~~~vLDiG~G~G~~~~~la 90 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFA 90 (232)
T ss_dssp CCEEEEECCSSSHHHHHHH
T ss_pred CCEEEEEeCchhHHHHHHH
Confidence 4699999999999988765
No 183
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=95.14 E-value=0.073 Score=48.76 Aligned_cols=73 Identities=16% Similarity=0.150 Sum_probs=42.9
Q ss_pred CCcEEEEeecCCCCcccHHHH--------------HHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCcc
Q 040129 29 SNTIRLADCGCAVGPNTFNAM--------------QDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQE 94 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~--------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~ 94 (333)
+++-+|+|+||++|..+..++ ..+++..++.....+..-..+.++++..|.- ..|
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~----~~l------- 142 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGF----MHI------- 142 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSH----HHH-------
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHH----HHH-------
Confidence 346799999999999888775 3455555554322100012345666666532 111
Q ss_pred ccceeeccCcccccccCCCCceeEEEecccccc
Q 040129 95 IHFFVAGVPGSFHKRLFPEKFLHLVHVSYALHW 127 (333)
Q Consensus 95 ~~~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHW 127 (333)
.+ ++++.|++++....||
T Consensus 143 -------------~~--~~~~fD~Ii~d~~~~~ 160 (275)
T 1iy9_A 143 -------------AK--SENQYDVIMVDSTEPV 160 (275)
T ss_dssp -------------HT--CCSCEEEEEESCSSCC
T ss_pred -------------hh--CCCCeeEEEECCCCCC
Confidence 01 2467999999766665
No 184
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=95.14 E-value=0.064 Score=53.37 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=15.5
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
..+|+|+||++|..++.+.
T Consensus 159 ~~~VLDiGcGtG~la~~la 177 (480)
T 3b3j_A 159 DKIVLDVGCGSGILSFFAA 177 (480)
T ss_dssp TCEEEEESCSTTHHHHHHH
T ss_pred CCEEEEecCcccHHHHHHH
Confidence 4699999999999776554
No 185
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=95.09 E-value=0.056 Score=49.44 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=15.6
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
.-+|+|+||++|..++.+.
T Consensus 80 ~~~vLDlG~G~G~~~~~~a 98 (281)
T 3bzb_A 80 GKTVCELGAGAGLVSIVAF 98 (281)
T ss_dssp TCEEEETTCTTSHHHHHHH
T ss_pred CCeEEEecccccHHHHHHH
Confidence 3589999999999887554
No 186
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=95.07 E-value=0.011 Score=54.24 Aligned_cols=106 Identities=18% Similarity=0.232 Sum_probs=66.7
Q ss_pred CCcEEEEeecCCCCcccHHHH-----------HHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccc
Q 040129 29 SNTIRLADCGCAVGPNTFNAM-----------QDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHF 97 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~-----------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~ 97 (333)
+.+-+|.|+||+.|+-++..+ ...|+.+++..... .+++.+...|++.-+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar~~~~~~-----g~~~~~~v~D~~~~~-------------- 164 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVITPFAREK-----DWDFTFALQDVLCAP-------------- 164 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHHHHHHHT-----TCEEEEEECCTTTSC--------------
T ss_pred CCCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHHHHHHhc-----CCCceEEEeecccCC--------------
Confidence 346799999999999998866 66788888776543 256788888877543
Q ss_pred eeeccCcccccccCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecC-------CCHHHHHHHHHHHHH
Q 040129 98 FVAGVPGSFHKRLFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAF-------APEVVVKAYANQFAK 167 (333)
Q Consensus 98 f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~-------~~~~v~~ay~~Q~~~ 167 (333)
|+.+.|++.++=++|-|.+...+...+---.++.++|.++- ..+...+-|..+|++
T Consensus 165 --------------~~~~~DvvLllk~lh~LE~q~~~~~~~ll~aL~~~~vvVsfPtksl~Gr~~gm~~~Y~~~~e~ 227 (253)
T 3frh_A 165 --------------PAEAGDLALIFKLLPLLEREQAGSAMALLQSLNTPRMAVSFPTRSLGGRGKGMEANYAAWFEG 227 (253)
T ss_dssp --------------CCCBCSEEEEESCHHHHHHHSTTHHHHHHHHCBCSEEEEEEECC-----------CHHHHHHH
T ss_pred --------------CCCCcchHHHHHHHHHhhhhchhhHHHHHHHhcCCCEEEEcChHHhcCCCcchhhHHHHHHHH
Confidence 44579999999999999765544211111144555665551 134555555555433
No 187
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=94.93 E-value=0.05 Score=50.44 Aligned_cols=20 Identities=15% Similarity=0.122 Sum_probs=17.0
Q ss_pred CcEEEEeecCCCCcccHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~ 49 (333)
.+-+|+|+||++|..+..+.
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~ 109 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVL 109 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHT
T ss_pred CCCEEEEEcCCcCHHHHHHH
Confidence 35799999999999987765
No 188
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=94.86 E-value=0.2 Score=44.16 Aligned_cols=20 Identities=15% Similarity=0.233 Sum_probs=17.1
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
.-+|+|+||++|..++.+..
T Consensus 61 ~~~VLdiG~G~G~~~~~la~ 80 (239)
T 2hnk_A 61 AKRIIEIGTFTGYSSLCFAS 80 (239)
T ss_dssp CSEEEEECCTTCHHHHHHHH
T ss_pred cCEEEEEeCCCCHHHHHHHH
Confidence 35899999999999988764
No 189
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=94.83 E-value=0.14 Score=46.07 Aligned_cols=20 Identities=20% Similarity=0.428 Sum_probs=16.6
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
.-+|+|+||++|..++.+..
T Consensus 100 ~~~vLdiG~G~G~~~~~l~~ 119 (280)
T 1i9g_A 100 GARVLEAGAGSGALTLSLLR 119 (280)
T ss_dssp TCEEEEECCTTSHHHHHHHH
T ss_pred CCEEEEEcccccHHHHHHHH
Confidence 45899999999998877654
No 190
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=94.77 E-value=0.18 Score=47.45 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHHH
Q 040129 7 TKDHIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 7 ~~~~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~ 50 (333)
.++.+..++..+... ...-+|.|+||++|..++.+..
T Consensus 187 l~~~la~~l~~~~~~-------~~~~~vLD~gcGsG~~~ie~a~ 223 (354)
T 3tma_A 187 LTPVLAQALLRLADA-------RPGMRVLDPFTGSGTIALEAAS 223 (354)
T ss_dssp CCHHHHHHHHHHTTC-------CTTCCEEESSCTTSHHHHHHHH
T ss_pred cCHHHHHHHHHHhCC-------CCCCEEEeCCCCcCHHHHHHHH
Confidence 345555555544321 2346899999999999888764
No 191
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=94.74 E-value=0.15 Score=47.28 Aligned_cols=21 Identities=10% Similarity=-0.010 Sum_probs=17.4
Q ss_pred CCcEEEEeecCCCCcccHHHH
Q 040129 29 SNTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~ 49 (333)
+++-+|+|+||++|..+..++
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~ 102 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVT 102 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHH
T ss_pred CCCCEEEEEeCChhHHHHHHH
Confidence 456799999999999887665
No 192
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=94.72 E-value=0.035 Score=50.86 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=17.2
Q ss_pred CcEEEEeecCCCCcccHHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~ 50 (333)
..-+|+|+||++|.-|..+.+
T Consensus 74 ~g~~VLDlGcGtG~~s~~la~ 94 (265)
T 2oxt_A 74 LTGRVVDLGCGRGGWSYYAAS 94 (265)
T ss_dssp CCEEEEEESCTTSHHHHHHHT
T ss_pred CCCEEEEeCcCCCHHHHHHHH
Confidence 357999999999998876654
No 193
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=94.69 E-value=0.079 Score=50.19 Aligned_cols=21 Identities=14% Similarity=0.039 Sum_probs=17.3
Q ss_pred CCcEEEEeecCCCCcccHHHH
Q 040129 29 SNTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~ 49 (333)
+++-+|+|+||++|..+..+.
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la 139 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVA 139 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHT
T ss_pred CCCCEEEEECCCccHHHHHHH
Confidence 445799999999999887765
No 194
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=94.60 E-value=0.034 Score=48.11 Aligned_cols=21 Identities=14% Similarity=-0.000 Sum_probs=17.2
Q ss_pred CcEEEEeecCCCCcccHHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~ 50 (333)
...+|+|+||++|.-|..+.+
T Consensus 25 ~g~~VLDlG~G~G~~s~~la~ 45 (191)
T 3dou_A 25 KGDAVIEIGSSPGGWTQVLNS 45 (191)
T ss_dssp TTCEEEEESCTTCHHHHHHTT
T ss_pred CCCEEEEEeecCCHHHHHHHH
Confidence 357999999999998876653
No 195
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=94.56 E-value=0.15 Score=44.37 Aligned_cols=21 Identities=14% Similarity=0.031 Sum_probs=17.5
Q ss_pred cEEEEeecCCCCcccHHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQD 51 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~ 51 (333)
.-+|+|+||++|..++.+.+.
T Consensus 74 ~~~vLDlG~G~G~~~~~la~~ 94 (227)
T 1g8a_A 74 GKSVLYLGIASGTTASHVSDI 94 (227)
T ss_dssp TCEEEEETTTSTTHHHHHHHH
T ss_pred CCEEEEEeccCCHHHHHHHHH
Confidence 469999999999999877643
No 196
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=94.55 E-value=0.058 Score=49.14 Aligned_cols=27 Identities=7% Similarity=0.146 Sum_probs=21.2
Q ss_pred HhHHHHHHhhhhhhccCceEEEEecCC
Q 040129 167 KDLERFLNNRAKEIVPGGMIIITNPSI 193 (333)
Q Consensus 167 ~D~~~FL~~Ra~EL~~GG~mvl~~~gr 193 (333)
++...+|+.=.+-|+|||+||......
T Consensus 188 ~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 188 LRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp TCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 455677887778899999999986544
No 197
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=94.52 E-value=0.074 Score=48.23 Aligned_cols=21 Identities=10% Similarity=0.188 Sum_probs=17.3
Q ss_pred CcEEEEeecCCCCcccHHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~ 50 (333)
..-+|+|+||++|..++.+..
T Consensus 110 ~~~~VLD~G~G~G~~~~~la~ 130 (275)
T 1yb2_A 110 PGMDILEVGVGSGNMSSYILY 130 (275)
T ss_dssp TTCEEEEECCTTSHHHHHHHH
T ss_pred CcCEEEEecCCCCHHHHHHHH
Confidence 346999999999998877654
No 198
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=94.48 E-value=0.087 Score=49.19 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=17.0
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
.-+|+|+||++|.-|..+.+
T Consensus 83 g~~VLDlGcG~G~~s~~la~ 102 (305)
T 2p41_A 83 EGKVVDLGCGRGGWSYYCGG 102 (305)
T ss_dssp CEEEEEETCTTSHHHHHHHT
T ss_pred CCEEEEEcCCCCHHHHHHHh
Confidence 47999999999998877664
No 199
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=94.48 E-value=0.16 Score=47.33 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=19.8
Q ss_pred HhHHHHHHhhhhhhccCceEEEEecC
Q 040129 167 KDLERFLNNRAKEIVPGGMIIITNPS 192 (333)
Q Consensus 167 ~D~~~FL~~Ra~EL~~GG~mvl~~~g 192 (333)
+.-..+|+.=++-|+|||+||+....
T Consensus 223 ~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 223 GLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 34456777777889999999997543
No 200
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=94.39 E-value=0.15 Score=46.75 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=17.4
Q ss_pred CCcEEEEeecCCCCcccHHHH
Q 040129 29 SNTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~ 49 (333)
+++-+|+|+||++|..+..+.
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~ 94 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVL 94 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHT
T ss_pred CCCCeEEEEcCCcCHHHHHHH
Confidence 345799999999999888765
No 201
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=94.37 E-value=0.1 Score=47.94 Aligned_cols=21 Identities=10% Similarity=-0.054 Sum_probs=17.5
Q ss_pred CCcEEEEeecCCCCcccHHHH
Q 040129 29 SNTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~ 49 (333)
+++-+|+|+||++|..+..+.
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~ 97 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELC 97 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHT
T ss_pred CCCCeEEEEeCCcCHHHHHHH
Confidence 445799999999999887765
No 202
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=94.30 E-value=0.48 Score=47.03 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=17.8
Q ss_pred CcEEEEeecCCCCcccHHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~ 50 (333)
..-+|+|+||++|.-|+.+.+
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~ 137 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISA 137 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHH
Confidence 346899999999999988764
No 203
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=94.23 E-value=0.13 Score=48.23 Aligned_cols=20 Identities=10% Similarity=-0.059 Sum_probs=17.0
Q ss_pred CcEEEEeecCCCCcccHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~ 49 (333)
++-+|+|+||++|..+..+.
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~ 135 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELC 135 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHT
T ss_pred CCCEEEEEcCCccHHHHHHH
Confidence 45799999999999887765
No 204
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=94.18 E-value=0.13 Score=46.47 Aligned_cols=74 Identities=14% Similarity=-0.005 Sum_probs=38.9
Q ss_pred cEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccc-cceeeccCcccccc
Q 040129 31 TIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEI-HFFVAGVPGSFHKR 109 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~-~~f~~~vpgSFy~r 109 (333)
.-+|+|+||++|..++.+.+.+ .|..+|+..|.-..=....=+++.... .--+..+.+.+..-
T Consensus 113 ~~~VLDiG~G~G~~~~~la~~~----------------~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 176 (277)
T 1o54_A 113 GDRIIDTGVGSGAMCAVLARAV----------------GSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG 176 (277)
T ss_dssp TCEEEEECCTTSHHHHHHHHHT----------------TTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC
T ss_pred CCEEEEECCcCCHHHHHHHHHh----------------CCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc
Confidence 4599999999999887665321 123456666653221111111111000 00122234444443
Q ss_pred cCCCCceeEEEe
Q 040129 110 LFPEKFLHLVHV 121 (333)
Q Consensus 110 lfP~~Sv~~~~S 121 (333)
+|++++|++++
T Consensus 177 -~~~~~~D~V~~ 187 (277)
T 1o54_A 177 -FDEKDVDALFL 187 (277)
T ss_dssp -CSCCSEEEEEE
T ss_pred -ccCCccCEEEE
Confidence 78889999997
No 205
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=94.12 E-value=0.31 Score=42.59 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=17.0
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
.-+|+|+||++|..++.+..
T Consensus 92 ~~~vldiG~G~G~~~~~l~~ 111 (248)
T 2yvl_A 92 EKRVLEFGTGSGALLAVLSE 111 (248)
T ss_dssp TCEEEEECCTTSHHHHHHHH
T ss_pred CCEEEEeCCCccHHHHHHHH
Confidence 46999999999998887764
No 206
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=94.09 E-value=0.36 Score=44.85 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=17.1
Q ss_pred HHHHHhhhhhhccCceEEEEecC
Q 040129 170 ERFLNNRAKEIVPGGMIIITNPS 192 (333)
Q Consensus 170 ~~FL~~Ra~EL~~GG~mvl~~~g 192 (333)
...|+.=.+-|+|||+|++....
T Consensus 151 ~~~l~~a~r~LkpGG~~v~~~~~ 173 (290)
T 2xyq_A 151 TYLCGFIKQKLALGGSIAVKITE 173 (290)
T ss_dssp HHHHHHHHHHEEEEEEEEEEECS
T ss_pred HHHHHHHHHhcCCCcEEEEEEec
Confidence 34566666889999999997543
No 207
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=94.02 E-value=0.041 Score=50.75 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=17.3
Q ss_pred CcEEEEeecCCCCcccHHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~ 50 (333)
..-+|+|+||++|.-|..+.+
T Consensus 82 ~g~~VLDlGcGtG~~s~~la~ 102 (276)
T 2wa2_A 82 LKGTVVDLGCGRGSWSYYAAS 102 (276)
T ss_dssp CCEEEEEESCTTCHHHHHHHT
T ss_pred CCCEEEEeccCCCHHHHHHHH
Confidence 357999999999998876654
No 208
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=93.87 E-value=0.2 Score=48.70 Aligned_cols=125 Identities=14% Similarity=0.120 Sum_probs=66.3
Q ss_pred cEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccc-cceeeccCccccc-
Q 040129 31 TIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEI-HFFVAGVPGSFHK- 108 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~-~~f~~~vpgSFy~- 108 (333)
.-+|+|+||++|..|+.+.+.. +..+|+-+|.-..=...+=+++.... ++ ..+-+.+..
T Consensus 247 g~~VLDlgaG~G~~t~~la~~~-----------------~~~~v~a~D~~~~~l~~~~~~~~~~g~~~--~~~~~D~~~~ 307 (429)
T 1sqg_A 247 GEHILDLCAAPGGKTTHILEVA-----------------PEAQVVAVDIDEQRLSRVYDNLKRLGMKA--TVKQGDGRYP 307 (429)
T ss_dssp TCEEEEESCTTCHHHHHHHHHC-----------------TTCEEEEEESSTTTHHHHHHHHHHTTCCC--EEEECCTTCT
T ss_pred cCeEEEECCCchHHHHHHHHHc-----------------CCCEEEEECCCHHHHHHHHHHHHHcCCCe--EEEeCchhhc
Confidence 3589999999999998876421 11345666654443333322221110 11 111122211
Q ss_pred -ccCCCCceeEEEe---ccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhccCc
Q 040129 109 -RLFPEKFLHLVHV---SYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVPGG 184 (333)
Q Consensus 109 -rlfP~~Sv~~~~S---s~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG 184 (333)
..+|.+++|.+++ .+.+..+.+.|..... .++..+ ....+....+|+.=.+-|+|||
T Consensus 308 ~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~--------------~~~~~~-----~~l~~~q~~~L~~a~~~LkpGG 368 (429)
T 1sqg_A 308 SQWCGEQQFDRILLDAPCSATGVIRRHPDIKWL--------------RRDRDI-----PELAQLQSEILDAIWPHLKTGG 368 (429)
T ss_dssp HHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHH--------------CCTTHH-----HHHHHHHHHHHHHHGGGEEEEE
T ss_pred hhhcccCCCCEEEEeCCCCcccccCCCcchhhc--------------CCHHHH-----HHHHHHHHHHHHHHHHhcCCCC
Confidence 1256678999997 3445555555543210 011111 1222333456777778899999
Q ss_pred eEEEEecCC
Q 040129 185 MIIITNPSI 193 (333)
Q Consensus 185 ~mvl~~~gr 193 (333)
+||......
T Consensus 369 ~lvystcs~ 377 (429)
T 1sqg_A 369 TLVYATCSV 377 (429)
T ss_dssp EEEEEESCC
T ss_pred EEEEEECCC
Confidence 999976443
No 209
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=93.82 E-value=0.15 Score=44.95 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=16.7
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
.-+|+|+||++|..++.+..
T Consensus 97 ~~~vLdiG~G~G~~~~~l~~ 116 (258)
T 2pwy_A 97 GMRVLEAGTGSGGLTLFLAR 116 (258)
T ss_dssp TCEEEEECCTTSHHHHHHHH
T ss_pred CCEEEEECCCcCHHHHHHHH
Confidence 46999999999998877654
No 210
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=93.76 E-value=0.22 Score=43.00 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=16.5
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
.-+|+|+||++|..|+.+.
T Consensus 65 ~~~vLdiG~G~G~~~~~la 83 (225)
T 3tr6_A 65 AKKVIDIGTFTGYSAIAMG 83 (225)
T ss_dssp CSEEEEECCTTSHHHHHHH
T ss_pred CCEEEEeCCcchHHHHHHH
Confidence 3589999999999998776
No 211
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=93.62 E-value=0.31 Score=44.68 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=16.5
Q ss_pred EEEEeecCCCCcccHHHHH
Q 040129 32 IRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~~ 50 (333)
-+|+|+||++|..++.+..
T Consensus 125 ~~vLDlG~GsG~~~~~la~ 143 (284)
T 1nv8_A 125 KTVADIGTGSGAIGVSVAK 143 (284)
T ss_dssp CEEEEESCTTSHHHHHHHH
T ss_pred CEEEEEeCchhHHHHHHHH
Confidence 5899999999999988763
No 212
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=93.61 E-value=0.15 Score=47.84 Aligned_cols=20 Identities=15% Similarity=0.074 Sum_probs=16.9
Q ss_pred CcEEEEeecCCCCcccHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~ 49 (333)
++-+|+|+||++|..+..+.
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~ 127 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVL 127 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHT
T ss_pred CCCEEEEEcCCcCHHHHHHH
Confidence 45799999999999887765
No 213
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=93.43 E-value=0.49 Score=40.78 Aligned_cols=19 Identities=16% Similarity=0.102 Sum_probs=16.5
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
.-+|+|+||++|..++.+.
T Consensus 59 ~~~vLdiG~G~G~~~~~la 77 (223)
T 3duw_A 59 ARNILEIGTLGGYSTIWLA 77 (223)
T ss_dssp CSEEEEECCTTSHHHHHHH
T ss_pred CCEEEEecCCccHHHHHHH
Confidence 4689999999999988765
No 214
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=93.35 E-value=0.52 Score=41.94 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=16.6
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
.-+|+|+||++|..++.+.
T Consensus 64 ~~~VLdiG~G~G~~~~~la 82 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMA 82 (248)
T ss_dssp CSEEEEECCTTSHHHHHHH
T ss_pred CCEEEEecCCchHHHHHHH
Confidence 4699999999999988765
No 215
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=93.34 E-value=0.6 Score=45.65 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=17.1
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
.-+|+|+||++|.-|+.+..
T Consensus 260 g~~VLDlgaG~G~~t~~la~ 279 (450)
T 2yxl_A 260 GETVVDLAAAPGGKTTHLAE 279 (450)
T ss_dssp TCEEEESSCTTCHHHHHHHH
T ss_pred cCEEEEeCCCccHHHHHHHH
Confidence 35899999999999988764
No 216
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=93.25 E-value=0.15 Score=47.47 Aligned_cols=21 Identities=14% Similarity=0.056 Sum_probs=17.5
Q ss_pred CCcEEEEeecCCCCcccHHHH
Q 040129 29 SNTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~ 49 (333)
+++-+|+|+||++|..+..+.
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~ 114 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVV 114 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHT
T ss_pred CCCCEEEEECCCchHHHHHHH
Confidence 445799999999999887765
No 217
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=93.18 E-value=0.27 Score=44.74 Aligned_cols=20 Identities=10% Similarity=0.032 Sum_probs=17.1
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
.-+|+|+||++|..|+.+..
T Consensus 126 ~~~VLDlgcG~G~~~~~la~ 145 (278)
T 2frn_A 126 DELVVDMFAGIGHLSLPIAV 145 (278)
T ss_dssp TCEEEETTCTTTTTHHHHHH
T ss_pred CCEEEEecccCCHHHHHHHH
Confidence 46899999999999988763
No 218
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=92.79 E-value=0.54 Score=41.30 Aligned_cols=20 Identities=10% Similarity=-0.012 Sum_probs=16.7
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
.-+|+|+||++|..|+.+..
T Consensus 57 ~~~vLdiG~G~G~~~~~la~ 76 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILN 76 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHH
T ss_pred CCCEEEEcCCchHHHHHHHH
Confidence 34899999999999987664
No 219
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=92.51 E-value=0.58 Score=44.00 Aligned_cols=28 Identities=11% Similarity=0.114 Sum_probs=22.1
Q ss_pred HHhHHHHHHhhhhhhccCceEEEEecCC
Q 040129 166 AKDLERFLNNRAKEIVPGGMIIITNPSI 193 (333)
Q Consensus 166 ~~D~~~FL~~Ra~EL~~GG~mvl~~~gr 193 (333)
.+|+..+|+.=.+-|+|||.++++....
T Consensus 248 ~~~~~~ll~~~~~~LkpgG~lli~~~~~ 275 (332)
T 2igt_A 248 FDHLPLMLDICREILSPKALGLVLTAYS 275 (332)
T ss_dssp HHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred HHHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence 3567778887789999999988887553
No 220
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=92.29 E-value=0.63 Score=44.35 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=23.8
Q ss_pred HHHHhHHHHHHhhhhhhccCceEEEEecC
Q 040129 164 QFAKDLERFLNNRAKEIVPGGMIIITNPS 192 (333)
Q Consensus 164 Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g 192 (333)
...+++..+|..=.+-|+|||.+++....
T Consensus 299 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 299 RAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp HHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 34577888899889999999999988743
No 221
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=92.10 E-value=0.62 Score=43.57 Aligned_cols=128 Identities=11% Similarity=0.093 Sum_probs=62.1
Q ss_pred CcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccceeeccCcccccc
Q 040129 30 NTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFFVAGVPGSFHKR 109 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f~~~vpgSFy~r 109 (333)
...+|.|.||++|..++.+.+.+-+ .. ....+++-.|+-..=....-.++... ..-+..+-|.+...
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~----~~--------~~~~~v~GiDi~~~~~~~a~~n~~~~-g~~~~i~~~D~l~~ 196 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLEL----KG--------DVDVHASGVDVDDLLISLALVGADLQ-RQKMTLLHQDGLAN 196 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHT----TS--------SCEEEEEEEESCHHHHHHHHHHHHHH-TCCCEEEESCTTSC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHH----hc--------CCCceEEEEECCHHHHHHHHHHHHhC-CCCceEEECCCCCc
Confidence 4689999999999988776654311 00 11244555543211110000000000 00011122222222
Q ss_pred cCCCCceeEEEeccccccccCCCccccCCCCCCCCCCceeecCCCHHHHHHHHHHHHHhHH-HHHHhhhhhhccCceEEE
Q 040129 110 LFPEKFLHLVHVSYALHWLSKVPEGLLDKNSPAWNKGRIHYAFAPEVVVKAYANQFAKDLE-RFLNNRAKEIVPGGMIII 188 (333)
Q Consensus 110 lfP~~Sv~~~~Ss~alHWLS~vP~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~-~FL~~Ra~EL~~GG~mvl 188 (333)
.+...+|+++++-.++|... + .......+...+|. .|.. .|+..=.+-|+|||++++
T Consensus 197 -~~~~~fD~Ii~NPPfg~~~~-~-~~~~~~~~~~~~g~-------------------~~~~~~~l~~~~~~Lk~gG~~~~ 254 (344)
T 2f8l_A 197 -LLVDPVDVVISDLPVGYYPD-D-ENAKTFELCREEGH-------------------SFAHFLFIEQGMRYTKPGGYLFF 254 (344)
T ss_dssp -CCCCCEEEEEEECCCSEESC-H-HHHTTSTTCCSSSC-------------------EEHHHHHHHHHHHTEEEEEEEEE
T ss_pred -cccCCccEEEECCCCCCcCc-h-hhhhhccccCCCCc-------------------chHHHHHHHHHHHHhCCCCEEEE
Confidence 24578999999988877432 1 11111111111221 1222 355555677999999999
Q ss_pred EecC
Q 040129 189 TNPS 192 (333)
Q Consensus 189 ~~~g 192 (333)
+.+.
T Consensus 255 v~p~ 258 (344)
T 2f8l_A 255 LVPD 258 (344)
T ss_dssp EEEG
T ss_pred EECc
Confidence 9853
No 222
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=91.58 E-value=1.9 Score=41.49 Aligned_cols=28 Identities=7% Similarity=0.262 Sum_probs=22.1
Q ss_pred HHHHhHHHHHHhhhhhhccCceEEEEec
Q 040129 164 QFAKDLERFLNNRAKEIVPGGMIIITNP 191 (333)
Q Consensus 164 Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~ 191 (333)
...+|+..++..=.+-|+|||.+++...
T Consensus 300 ~~~~~~~~ll~~a~~~LkpGG~Lv~~s~ 327 (393)
T 4dmg_A 300 AMKRHLVDLVREALRLLAEEGFLWLSSC 327 (393)
T ss_dssp HHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 4456777888888899999999996543
No 223
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=91.38 E-value=0.46 Score=43.11 Aligned_cols=51 Identities=25% Similarity=0.380 Sum_probs=40.7
Q ss_pred cEEEEeecCCCCcccHHHH------------HHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM------------QDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTL 87 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~l 87 (333)
.-+|+|+||++|..|..+. ...++.+++++.. .+.++++..|...-||..+
T Consensus 30 ~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~------~~~v~~i~~D~~~~~~~~~ 92 (255)
T 3tqs_A 30 TDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQ------QKNITIYQNDALQFDFSSV 92 (255)
T ss_dssp TCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTT------CTTEEEEESCTTTCCGGGS
T ss_pred cCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhh------CCCcEEEEcchHhCCHHHh
Confidence 4689999999999999987 5667777766543 3568999999999888765
No 224
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=90.57 E-value=1.3 Score=42.05 Aligned_cols=24 Identities=25% Similarity=0.661 Sum_probs=19.3
Q ss_pred HHHHHHhhhhhhccCceEEEEecC
Q 040129 169 LERFLNNRAKEIVPGGMIIITNPS 192 (333)
Q Consensus 169 ~~~FL~~Ra~EL~~GG~mvl~~~g 192 (333)
+..||..=.+-|+|||++++..+.
T Consensus 143 ~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 143 YGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred HHHHHHHHHHHhCCCCEEEEEECh
Confidence 446777777889999999999864
No 225
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=90.54 E-value=0.48 Score=46.95 Aligned_cols=20 Identities=25% Similarity=0.194 Sum_probs=17.3
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
.-+|+|+||++|.-|+.+.+
T Consensus 102 g~~VLDlgaGpG~kt~~LA~ 121 (464)
T 3m6w_A 102 GERVLDLAAAPGGKTTHLAA 121 (464)
T ss_dssp TCEEEESSCTTCHHHHHHHH
T ss_pred CCEEEEEcCCcCHHHHHHHH
Confidence 46899999999999988764
No 226
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=90.37 E-value=0.64 Score=43.18 Aligned_cols=66 Identities=14% Similarity=0.054 Sum_probs=45.0
Q ss_pred cEEEEeecCCCCcccHHHHH------------HHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccce
Q 040129 31 TIRLADCGCAVGPNTFNAMQ------------DLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFF 98 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~------------~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f 98 (333)
.-+|+|+||++|..|..+.. ..++.+++++.. .+.++++..|.-.-||..
T Consensus 51 ~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~------~~~v~vi~gD~l~~~~~~------------ 112 (295)
T 3gru_A 51 DDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKEL------YNNIEIIWGDALKVDLNK------------ 112 (295)
T ss_dssp TCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHH------CSSEEEEESCTTTSCGGG------------
T ss_pred cCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhcc------CCCeEEEECchhhCCccc------------
Confidence 46899999999999998874 344555554432 245778888776555432
Q ss_pred eeccCcccccccCCCCceeEEEecccccccc
Q 040129 99 VAGVPGSFHKRLFPEKFLHLVHVSYALHWLS 129 (333)
Q Consensus 99 ~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS 129 (333)
.+.|.++++...||-+
T Consensus 113 ---------------~~fD~Iv~NlPy~is~ 128 (295)
T 3gru_A 113 ---------------LDFNKVVANLPYQISS 128 (295)
T ss_dssp ---------------SCCSEEEEECCGGGHH
T ss_pred ---------------CCccEEEEeCcccccH
Confidence 2368888887777743
No 227
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=90.30 E-value=0.73 Score=42.14 Aligned_cols=68 Identities=16% Similarity=0.241 Sum_probs=43.5
Q ss_pred cEEEEeecCCCCcccHHHHH------------HHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccce
Q 040129 31 TIRLADCGCAVGPNTFNAMQ------------DLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFF 98 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~------------~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f 98 (333)
.-+|+|+||++|..|..+.. ..++.++++....+ ..+.++++..|.-.-|+
T Consensus 29 ~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~D~~~~~~-------------- 91 (285)
T 1zq9_A 29 TDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTP---VASKLQVLVGDVLKTDL-------------- 91 (285)
T ss_dssp TCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTST---TGGGEEEEESCTTTSCC--------------
T ss_pred CCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEEcceecccc--------------
Confidence 46899999999999998873 34555555443211 01346666666533221
Q ss_pred eeccCcccccccCCCCceeEEEeccccccccC
Q 040129 99 VAGVPGSFHKRLFPEKFLHLVHVSYALHWLSK 130 (333)
Q Consensus 99 ~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~ 130 (333)
| ++|.++++...||.+.
T Consensus 92 -------------~--~fD~vv~nlpy~~~~~ 108 (285)
T 1zq9_A 92 -------------P--FFDTCVANLPYQISSP 108 (285)
T ss_dssp -------------C--CCSEEEEECCGGGHHH
T ss_pred -------------h--hhcEEEEecCcccchH
Confidence 1 3689999998888654
No 228
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=90.21 E-value=0.5 Score=40.06 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=16.5
Q ss_pred CcEEEEeecCCCCcccHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~ 49 (333)
..-+|+|+||++|..++.+.
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~ 70 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSY 70 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHH
T ss_pred CCCEEEEEeCCccHHHHHHH
Confidence 34689999999999887654
No 229
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=89.17 E-value=0.54 Score=47.44 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=25.0
Q ss_pred CCcEEEEeecCCCCcccHHHH------------HHHHHHHHHHhhh
Q 040129 29 SNTIRLADCGCAVGPNTFNAM------------QDLIEIVKHKYKS 62 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~------------~~ii~~i~~~~~~ 62 (333)
+++.+|.|+||+.|-.|..+. ...|+.-+.+..+
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~ 110 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEE 110 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHh
Confidence 457899999999999888776 4556655555433
No 230
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=89.03 E-value=1.9 Score=41.12 Aligned_cols=29 Identities=10% Similarity=0.036 Sum_probs=23.4
Q ss_pred HHHHhHHHHHHhhhhhhccCceEEEEecC
Q 040129 164 QFAKDLERFLNNRAKEIVPGGMIIITNPS 192 (333)
Q Consensus 164 Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g 192 (333)
+..+++..+|..=.+-|+|||.+++....
T Consensus 309 ~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 309 AGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 34577888888888999999999888643
No 231
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=88.95 E-value=0.91 Score=40.54 Aligned_cols=47 Identities=9% Similarity=0.084 Sum_probs=30.4
Q ss_pred CcEEEEeecCCCCcccHHHHH--------------HHHHHHHHHhhhcCCCCCCCcceEEecCC
Q 040129 30 NTIRLADCGCAVGPNTFNAMQ--------------DLIEIVKHKYKSQCPNSQNPEFHVSFNDQ 79 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~--------------~ii~~i~~~~~~~~~~~~~~~~~v~~nDl 79 (333)
..-+|+|+||++|.-++.+.. ..++..++.....+. ...+++...|.
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl---~~~i~~~~~d~ 75 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGL---KEKIQVRLANG 75 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC---TTTEEEEECSG
T ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC---CceEEEEECch
Confidence 347999999999999998873 444555554444321 12366666664
No 232
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=88.91 E-value=1.5 Score=45.51 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=22.6
Q ss_pred HHhHHHHHHhhhhhhccCceEEEEecCC
Q 040129 166 AKDLERFLNNRAKEIVPGGMIIITNPSI 193 (333)
Q Consensus 166 ~~D~~~FL~~Ra~EL~~GG~mvl~~~gr 193 (333)
.+|...+++.=.+-|+|||.|++....+
T Consensus 633 ~~~~~~ll~~a~~~LkpgG~L~~s~~~~ 660 (703)
T 3v97_A 633 QRDHLALMKDLKRLLRAGGTIMFSNNKR 660 (703)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence 4677778888789999999999887554
No 233
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=88.49 E-value=0.76 Score=45.40 Aligned_cols=20 Identities=15% Similarity=0.094 Sum_probs=17.2
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
.-+|+|+||++|.-|+.+.+
T Consensus 106 g~~VLDlcaGpGgkt~~lA~ 125 (456)
T 3m4x_A 106 GEKVLDLCAAPGGKSTQLAA 125 (456)
T ss_dssp TCEEEESSCTTCHHHHHHHH
T ss_pred CCEEEEECCCcCHHHHHHHH
Confidence 46899999999999987764
No 234
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=87.71 E-value=2.4 Score=35.80 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=16.6
Q ss_pred CcEEEEeecCCCCcccHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~ 49 (333)
..-+|+|+||++|..++.+.
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~ 68 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGAL 68 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHH
T ss_pred CcCEEEEeeCCCCHHHHHHH
Confidence 34689999999999887764
No 235
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=86.83 E-value=1.2 Score=40.91 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=39.7
Q ss_pred cEEEEeecCCCCcccHHHH------------HHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcCCccccce
Q 040129 31 TIRLADCGCAVGPNTFNAM------------QDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSLPQEIHFF 98 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l~~~~~~f 98 (333)
.-+|+|+||++|..|..+. ...++..++.....+ .+.+++...|.-.-
T Consensus 43 ~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~----~~~v~~~~~D~~~~---------------- 102 (299)
T 2h1r_A 43 SDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEG----YNNLEVYEGDAIKT---------------- 102 (299)
T ss_dssp TCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTT----CCCEEC----CCSS----------------
T ss_pred cCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcC----CCceEEEECchhhC----------------
Confidence 4689999999999998876 344555555443211 13355555544321
Q ss_pred eeccCcccccccCCCCceeEEEeccccccccC
Q 040129 99 VAGVPGSFHKRLFPEKFLHLVHVSYALHWLSK 130 (333)
Q Consensus 99 ~~~vpgSFy~rlfP~~Sv~~~~Ss~alHWLS~ 130 (333)
|..++|.++++...||.+.
T Consensus 103 -------------~~~~~D~Vv~n~py~~~~~ 121 (299)
T 2h1r_A 103 -------------VFPKFDVCTANIPYKISSP 121 (299)
T ss_dssp -------------CCCCCSEEEEECCGGGHHH
T ss_pred -------------CcccCCEEEEcCCcccccH
Confidence 1125789999888888653
No 236
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=86.43 E-value=7.8 Score=36.78 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=20.2
Q ss_pred HhHHHHHHhhhhhhccCceEEEEecC
Q 040129 167 KDLERFLNNRAKEIVPGGMIIITNPS 192 (333)
Q Consensus 167 ~D~~~FL~~Ra~EL~~GG~mvl~~~g 192 (333)
+++..++..-.+-|+|||.+++....
T Consensus 316 ~~~~~~l~~~~~~LkpgG~l~~~~~~ 341 (396)
T 3c0k_A 316 RGYKDINMLAIQLLNEGGILLTFSCS 341 (396)
T ss_dssp THHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 45666777777899999999988743
No 237
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=86.41 E-value=1.6 Score=39.12 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=17.7
Q ss_pred CcEEEEeecCCCCcccHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~ 49 (333)
+.-+|+|+||++|.-++.+.
T Consensus 21 ~g~~VlDIGtGsG~l~i~la 40 (230)
T 3lec_A 21 KGARLLDVGSDHAYLPIFLL 40 (230)
T ss_dssp TTEEEEEETCSTTHHHHHHH
T ss_pred CCCEEEEECCchHHHHHHHH
Confidence 34799999999999999887
No 238
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=83.85 E-value=0.97 Score=41.39 Aligned_cols=48 Identities=13% Similarity=0.224 Sum_probs=35.0
Q ss_pred EEEeecCCCCcccHHHHH------------HHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHH
Q 040129 33 RLADCGCAVGPNTFNAMQ------------DLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTL 87 (333)
Q Consensus 33 ~IaD~GCs~G~Ns~~~~~------------~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~l 87 (333)
+|.|+||++|..|..+.+ ..++.+++++. ...++++..|.-.-||..+
T Consensus 49 ~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~-------~~~v~vi~~D~l~~~~~~~ 108 (271)
T 3fut_A 49 PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLS-------GLPVRLVFQDALLYPWEEV 108 (271)
T ss_dssp CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTT-------TSSEEEEESCGGGSCGGGS
T ss_pred eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC-------CCCEEEEECChhhCChhhc
Confidence 999999999999998874 34555555432 2358888888877776544
No 239
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=83.83 E-value=5.9 Score=39.80 Aligned_cols=144 Identities=13% Similarity=0.177 Sum_probs=65.6
Q ss_pred cEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHhhcC--CccccceeeccCccccc
Q 040129 31 TIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLFTSL--PQEIHFFVAGVPGSFHK 108 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF~~l--~~~~~~f~~~vpgSFy~ 108 (333)
.-+|.|.+|++|.-.+.+...+.+.-... .. .........+++-.|+-..=....-.++ .....-+-...+-+|..
T Consensus 245 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~-~~-~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~ 322 (544)
T 3khk_A 245 KGRVYDPAMGSGGFFVSSDKFIEKHANVK-HY-NASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLD 322 (544)
T ss_dssp SEEEEESSCTTCHHHHHHHHHHHHHHHHH-TS-CHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTS
T ss_pred CCeEeCcccCcCcHHHHHHHHHHHhcccc-cc-chHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcC
Confidence 34999999999977666655443221110 00 0000001355666554221111110000 00000011133445556
Q ss_pred ccCCCCceeEEEec--ccc-ccccCCCccccCCCCCCCCCCc---eeecCCCHHHHHHHHHHHHHhHHHHHHhhhhhhcc
Q 040129 109 RLFPEKFLHLVHVS--YAL-HWLSKVPEGLLDKNSPAWNKGR---IHYAFAPEVVVKAYANQFAKDLERFLNNRAKEIVP 182 (333)
Q Consensus 109 rlfP~~Sv~~~~Ss--~al-HWLS~vP~~l~~~~~~~~nkg~---i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~ 182 (333)
..++...+|+|+++ |.. .|-.. .+... +.|.-|. -... .++. ...|+ .||..=.+-|+|
T Consensus 323 ~~~~~~~fD~Iv~NPPf~~~~~~~~---~~~~d--~r~~~g~~~~~~~~-~~~~--------~~~~~-~Fl~~~l~~Lk~ 387 (544)
T 3khk_A 323 DQHPDLRADFVMTNPPFNMKDWWHE---KLADD--PRWTINTNGEKRIL-TPPT--------GNANF-AWMLHMLYHLAP 387 (544)
T ss_dssp CSCTTCCEEEEEECCCSSCCSCCCG---GGTTC--GGGEECCC--CEEC-CCCT--------TCTHH-HHHHHHHHTEEE
T ss_pred cccccccccEEEECCCcCCccccch---hhhhh--hhhhcCcccccccc-cCCC--------cchhH-HHHHHHHHHhcc
Confidence 67788999999996 332 35332 11110 0000000 0000 1000 00122 477777788999
Q ss_pred CceEEEEec
Q 040129 183 GGMIIITNP 191 (333)
Q Consensus 183 GG~mvl~~~ 191 (333)
||+++++++
T Consensus 388 gGr~aiVlP 396 (544)
T 3khk_A 388 TGSMALLLA 396 (544)
T ss_dssp EEEEEEEEE
T ss_pred CceEEEEec
Confidence 999999984
No 240
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=83.03 E-value=6.8 Score=37.89 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=17.7
Q ss_pred cEEEEeecCCCCcccHHHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQDL 52 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~i 52 (333)
..+|.|.||++|.-.+.+...+
T Consensus 172 ~~~VlDpacGsG~fl~~~~~~l 193 (445)
T 2okc_A 172 GETVCDPACGTGGFLLTAYDYM 193 (445)
T ss_dssp TCCEEETTCTTCHHHHHHHHHH
T ss_pred CCEEeccCCCcchHHHHHHHHH
Confidence 4689999999999877766543
No 241
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=81.37 E-value=2.5 Score=37.48 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=17.8
Q ss_pred CcEEEEeecCCCCcccHHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~ 50 (333)
..-+|+|+||++|..|..+.+
T Consensus 30 ~~~~VLDiG~G~G~lt~~l~~ 50 (244)
T 1qam_A 30 EHDNIFEIGSGKGHFTLELVQ 50 (244)
T ss_dssp TTCEEEEECCTTSHHHHHHHH
T ss_pred CCCEEEEEeCCchHHHHHHHH
Confidence 346899999999999988874
No 242
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=80.91 E-value=2.2 Score=38.50 Aligned_cols=20 Identities=25% Similarity=0.187 Sum_probs=17.7
Q ss_pred CcEEEEeecCCCCcccHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~ 49 (333)
..-+|+|+||++|.-++.+.
T Consensus 21 ~g~~VlDIGtGsG~l~i~la 40 (244)
T 3gnl_A 21 KNERIADIGSDHAYLPCFAV 40 (244)
T ss_dssp SSEEEEEETCSTTHHHHHHH
T ss_pred CCCEEEEECCccHHHHHHHH
Confidence 34799999999999999887
No 243
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=80.81 E-value=7.3 Score=36.78 Aligned_cols=34 Identities=21% Similarity=0.186 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHH
Q 040129 8 KDHIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 8 ~~~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~ 49 (333)
++.+..++..+. . ...-+|+|+||++|..++.+.
T Consensus 203 ~~~la~~l~~~~-~-------~~~~~vLD~gCGsG~~~i~~a 236 (373)
T 3tm4_A 203 KASIANAMIELA-E-------LDGGSVLDPMCGSGTILIELA 236 (373)
T ss_dssp CHHHHHHHHHHH-T-------CCSCCEEETTCTTCHHHHHHH
T ss_pred cHHHHHHHHHhh-c-------CCCCEEEEccCcCcHHHHHHH
Confidence 555556655444 2 223679999999999887765
No 244
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=80.52 E-value=10 Score=35.74 Aligned_cols=18 Identities=11% Similarity=0.025 Sum_probs=15.3
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
.-+|+|+| ++|..++.+.
T Consensus 173 ~~~VLDlG-G~G~~~~~la 190 (373)
T 2qm3_A 173 NKDIFVLG-DDDLTSIALM 190 (373)
T ss_dssp TCEEEEES-CTTCHHHHHH
T ss_pred CCEEEEEC-CCCHHHHHHH
Confidence 46999999 9999987764
No 245
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=80.10 E-value=17 Score=36.36 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=17.8
Q ss_pred CcEEEEeecCCCCcccHHHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAMQD 51 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ 51 (333)
...+|.|.+|++|.-.+.+...
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~ 242 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRY 242 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHH
T ss_pred CCCEEeecccchhHHHHHHHHH
Confidence 4579999999999887776653
No 246
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=79.45 E-value=4.3 Score=37.13 Aligned_cols=50 Identities=18% Similarity=0.298 Sum_probs=36.0
Q ss_pred cEEEEeecCCCCcccHHHHHHH----------------HHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHh
Q 040129 31 TIRLADCGCAVGPNTFNAMQDL----------------IEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLF 88 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~i----------------i~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF 88 (333)
.-+|+|+||++|..|..+.... ++.++++. .+.++++..|.-.-||..++
T Consensus 43 ~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--------~~~v~~i~~D~~~~~~~~~~ 108 (279)
T 3uzu_A 43 GERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--------GELLELHAGDALTFDFGSIA 108 (279)
T ss_dssp TCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--------GGGEEEEESCGGGCCGGGGS
T ss_pred cCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--------CCCcEEEECChhcCChhHhc
Confidence 4689999999999999887543 22333321 24588999998888887664
No 247
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=79.39 E-value=2.6 Score=37.95 Aligned_cols=50 Identities=14% Similarity=0.144 Sum_probs=33.0
Q ss_pred cEEEEeecCCCCcccHHHHHH--------------HHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHHh
Q 040129 31 TIRLADCGCAVGPNTFNAMQD--------------LIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTLF 88 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~--------------ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~lF 88 (333)
.-+|+|+||++|..|. + .. .++.+++++. ..+.++++..|.-.-||..+|
T Consensus 22 ~~~VLEIG~G~G~lt~-l-~~~~~~~v~avEid~~~~~~a~~~~~------~~~~v~~i~~D~~~~~~~~~~ 85 (252)
T 1qyr_A 22 GQAMVEIGPGLAALTE-P-VGERLDQLTVIELDRDLAARLQTHPF------LGPKLTIYQQDAMTFNFGELA 85 (252)
T ss_dssp TCCEEEECCTTTTTHH-H-HHTTCSCEEEECCCHHHHHHHHTCTT------TGGGEEEECSCGGGCCHHHHH
T ss_pred cCEEEEECCCCcHHHH-h-hhCCCCeEEEEECCHHHHHHHHHHhc------cCCceEEEECchhhCCHHHhh
Confidence 3579999999999998 3 32 1111121111 124688999998888888775
No 248
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=78.21 E-value=1.7 Score=38.33 Aligned_cols=35 Identities=9% Similarity=-0.097 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHHH
Q 040129 9 DHIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 9 ~~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~ 50 (333)
|.....+.+++... . +-+|+|+||++|..|+.+.+
T Consensus 67 p~~~~~l~~~l~~~-----~--~~~VLDiG~GtG~~t~~la~ 101 (236)
T 2bm8_A 67 PDTQAVYHDMLWEL-----R--PRTIVELGVYNGGSLAWFRD 101 (236)
T ss_dssp HHHHHHHHHHHHHH-----C--CSEEEEECCTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-----C--CCEEEEEeCCCCHHHHHHHH
Confidence 55666666665543 1 35899999999999987654
No 249
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=74.39 E-value=2.2 Score=38.30 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=33.3
Q ss_pred cEEEEeecCCCCcccHHHHHH-------------HHHHHHHHhhhcCCCCCCCcceEEecCCCCCchHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQD-------------LIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDFNTL 87 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~-------------ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDFn~l 87 (333)
.-+|.|+||++|..|..+.+. .++.++++ ....++++..|.-.-||..+
T Consensus 32 ~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~--------~~~~v~~i~~D~~~~~~~~~ 93 (249)
T 3ftd_A 32 GNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI--------GDERLEVINEDASKFPFCSL 93 (249)
T ss_dssp TCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS--------CCTTEEEECSCTTTCCGGGS
T ss_pred cCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc--------cCCCeEEEEcchhhCChhHc
Confidence 468999999999999888743 22222221 12457888888877777654
No 250
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=70.73 E-value=35 Score=36.26 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=19.5
Q ss_pred HHHHHHhhhhhhccCceEEEEecC
Q 040129 169 LERFLNNRAKEIVPGGMIIITNPS 192 (333)
Q Consensus 169 ~~~FL~~Ra~EL~~GG~mvl~~~g 192 (333)
...|+..=.+-|++||++++.++.
T Consensus 444 y~aFIe~Al~lLKpGGrLAfIlP~ 467 (878)
T 3s1s_A 444 EALFLELVTELVQDGTVISAIMPK 467 (878)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEET
T ss_pred HHHHHHHHHHhcCCCcEEEEEECh
Confidence 456777777889999999999854
No 251
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=67.11 E-value=17 Score=34.95 Aligned_cols=46 Identities=15% Similarity=0.147 Sum_probs=29.9
Q ss_pred cEEEEeecCCCCcccHHHH------------HHHHHHHHHHhhhcCCCCCCCcceEEecCCC
Q 040129 31 TIRLADCGCAVGPNTFNAM------------QDLIEIVKHKYKSQCPNSQNPEFHVSFNDQS 80 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP 80 (333)
.-+|+|+||++|..++.+. ...++..++.....+ ...++++..|..
T Consensus 287 ~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~----~~~v~f~~~d~~ 344 (433)
T 1uwv_A 287 EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNG----LQNVTFYHENLE 344 (433)
T ss_dssp TCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEECCTT
T ss_pred CCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEECCHH
Confidence 3589999999999999886 345555555443322 124666666653
No 252
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=66.05 E-value=3.7 Score=36.15 Aligned_cols=22 Identities=18% Similarity=0.077 Sum_probs=18.4
Q ss_pred CcEEEEeecCCCCcccHHHHHH
Q 040129 30 NTIRLADCGCAVGPNTFNAMQD 51 (333)
Q Consensus 30 ~~~~IaD~GCs~G~Ns~~~~~~ 51 (333)
..-+|.|+||++|..|..+...
T Consensus 29 ~~~~VLDiG~G~G~~~~~l~~~ 50 (245)
T 1yub_A 29 ETDTVYEIGTGKGHLTTKLAKI 50 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHH
T ss_pred CCCEEEEEeCCCCHHHHHHHHh
Confidence 3579999999999999887653
No 253
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=61.24 E-value=11 Score=34.37 Aligned_cols=19 Identities=11% Similarity=0.060 Sum_probs=16.9
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
.-+|+|+||++|+.|+.+.
T Consensus 126 g~~VlD~~aG~G~~~i~~a 144 (278)
T 3k6r_A 126 DELVVDMFAGIGHLSLPIA 144 (278)
T ss_dssp TCEEEETTCTTTTTTHHHH
T ss_pred CCEEEEecCcCcHHHHHHH
Confidence 4689999999999998876
No 254
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=58.68 E-value=3.8 Score=36.18 Aligned_cols=20 Identities=10% Similarity=0.165 Sum_probs=16.9
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
+-+|+|+||++|..|+.+..
T Consensus 61 ~~~VLDiG~G~G~~t~~la~ 80 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSL 80 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHH
T ss_pred cCEEEEeeCCcCHHHHHHHH
Confidence 45899999999999987653
No 255
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=58.62 E-value=5.1 Score=36.16 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.8
Q ss_pred CCcEEEEeecCCCCcccHHHHHHH
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDL 52 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~i 52 (333)
.+.++|+|+||++|-|++.+++..
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~ 82 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAF 82 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHH
T ss_pred CCCCEEEEECCChHHHHHHHHHHH
Confidence 467999999999999999987644
No 256
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=58.49 E-value=8.3 Score=32.38 Aligned_cols=33 Identities=9% Similarity=-0.083 Sum_probs=23.5
Q ss_pred HHHHHHHhhhcccCCCCCCcEEEEeecCCCCc-ccHHHH
Q 040129 12 HDAIIRKLDVKSLADSSSNTIRLADCGCAVGP-NTFNAM 49 (333)
Q Consensus 12 ~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~-Ns~~~~ 49 (333)
.+.|.+.+... -...-+|+|+||+.|. |+..+.
T Consensus 22 ~e~LaeYI~~~-----~~~~~rVlEVG~G~g~~vA~~La 55 (153)
T 2k4m_A 22 WNDLAVYIIRC-----SGPGTRVVEVGAGRFLYVSDYIR 55 (153)
T ss_dssp HHHHHHHHHHH-----SCSSSEEEEETCTTCCHHHHHHH
T ss_pred HHHHHHHHHhc-----CCCCCcEEEEccCCChHHHHHHH
Confidence 77777766543 2334699999999995 886554
No 257
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=58.30 E-value=4.6 Score=36.32 Aligned_cols=20 Identities=15% Similarity=0.052 Sum_probs=17.4
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
.-+|+|+||++|..|+.+..
T Consensus 120 ~~~VLDlgcG~G~~s~~la~ 139 (272)
T 3a27_A 120 NEVVVDMFAGIGYFTIPLAK 139 (272)
T ss_dssp TCEEEETTCTTTTTHHHHHH
T ss_pred CCEEEEecCcCCHHHHHHHH
Confidence 46899999999999988764
No 258
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=57.68 E-value=9.5 Score=39.18 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=19.6
Q ss_pred CCCcEEEEeecCCCCcccHHHHHHH
Q 040129 28 SSNTIRLADCGCAVGPNTFNAMQDL 52 (333)
Q Consensus 28 ~~~~~~IaD~GCs~G~Ns~~~~~~i 52 (333)
..+..+|+|+||++|+-+...+...
T Consensus 355 ~~~~~vVldVGaGrGpLv~~al~A~ 379 (637)
T 4gqb_A 355 DTNVQVLMVLGAGRGPLVNASLRAA 379 (637)
T ss_dssp TTCEEEEEEESCTTSHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCcHHHHHHHHHH
Confidence 3567899999999999976666543
No 259
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=55.39 E-value=10 Score=36.81 Aligned_cols=46 Identities=11% Similarity=0.138 Sum_probs=32.7
Q ss_pred cEEEEeecCCCCcccHHHH------------HHHHHHHHHHhhhc--CCCCCCCcceEEecCCC
Q 040129 31 TIRLADCGCAVGPNTFNAM------------QDLIEIVKHKYKSQ--CPNSQNPEFHVSFNDQS 80 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~------------~~ii~~i~~~~~~~--~~~~~~~~~~v~~nDlP 80 (333)
.-+|+|+||++|..++.+. ...++..++..... + ...++++..|..
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~g----l~~i~~i~~Da~ 153 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNE----GKDVNILTGDFK 153 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCT----TCEEEEEESCGG
T ss_pred CCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccC----CCcEEEEECcHH
Confidence 3689999999999998775 45667776665543 2 135777777764
No 260
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=54.75 E-value=11 Score=39.40 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=18.2
Q ss_pred CCcEEEEeecCCCCcccHHHHHH
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQD 51 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ 51 (333)
.+..+|+|+||++|+-+...+..
T Consensus 408 ~~~~VVldVGaGtGpLs~~al~A 430 (745)
T 3ua3_A 408 RKTVVIYLLGGGRGPIGTKILKS 430 (745)
T ss_dssp CSEEEEEEESCTTCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCHHHHHHHHH
Confidence 34689999999999998665543
No 261
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=53.53 E-value=3.7 Score=34.82 Aligned_cols=19 Identities=11% Similarity=-0.010 Sum_probs=16.2
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
+-+|+|+||++|..|+.+.
T Consensus 57 ~~~vLdiG~G~G~~~~~la 75 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFA 75 (210)
T ss_dssp CSEEEEESCGGGHHHHHHH
T ss_pred CCEEEEEcCCccHHHHHHH
Confidence 4589999999999987765
No 262
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=52.65 E-value=5.7 Score=33.91 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=16.4
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
.-+|+|+||++|..++.+.
T Consensus 70 ~~~vLdiG~G~G~~~~~la 88 (229)
T 2avd_A 70 AKKALDLGTFTGYSALALA 88 (229)
T ss_dssp CCEEEEECCTTSHHHHHHH
T ss_pred CCEEEEEcCCccHHHHHHH
Confidence 4689999999999887765
No 263
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=50.42 E-value=13 Score=32.22 Aligned_cols=19 Identities=11% Similarity=0.174 Sum_probs=16.2
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
.-+|+|+||++|..++.+.
T Consensus 73 ~~~vLdiG~G~G~~~~~la 91 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMA 91 (232)
T ss_dssp CCEEEEECCTTSHHHHHHH
T ss_pred CCEEEEecCCCCHHHHHHH
Confidence 3589999999999887765
No 264
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=48.58 E-value=7.1 Score=36.08 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=17.9
Q ss_pred cEEEEeecCCCCcccHHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQD 51 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~~ 51 (333)
.-+|+|+||++|..|+.+++.
T Consensus 27 g~~vLD~g~G~G~~s~~la~~ 47 (301)
T 1m6y_A 27 EKIILDCTVGEGGHSRAILEH 47 (301)
T ss_dssp TCEEEETTCTTSHHHHHHHHH
T ss_pred CCEEEEEeCCcCHHHHHHHHH
Confidence 358999999999999988753
No 265
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=48.10 E-value=8.3 Score=33.67 Aligned_cols=20 Identities=10% Similarity=0.110 Sum_probs=17.2
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
+-+|+|+||++|..++.+..
T Consensus 71 ~~~VLeiG~G~G~~~~~la~ 90 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTAL 90 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 45899999999999988764
No 266
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=47.85 E-value=19 Score=34.72 Aligned_cols=18 Identities=17% Similarity=0.106 Sum_probs=16.3
Q ss_pred EEEEeecCCCCcccHHHH
Q 040129 32 IRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~ 49 (333)
-+|+|+||++|..++.+.
T Consensus 292 ~~VLDlgcG~G~~sl~la 309 (425)
T 2jjq_A 292 EKILDMYSGVGTFGIYLA 309 (425)
T ss_dssp SEEEEETCTTTHHHHHHH
T ss_pred CEEEEeeccchHHHHHHH
Confidence 589999999999998876
No 267
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=47.30 E-value=14 Score=33.96 Aligned_cols=19 Identities=32% Similarity=0.478 Sum_probs=15.9
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
.-+|+|||||.|.-|..++
T Consensus 75 ~~~VLDLGaAPGGWSQvAa 93 (277)
T 3evf_A 75 EGRVIDLGCGRGGWCYYAA 93 (277)
T ss_dssp CEEEEEETCTTCHHHHHHH
T ss_pred CCEEEEecCCCCHHHHHHH
Confidence 4589999999999987654
No 268
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=46.79 E-value=6.2 Score=34.88 Aligned_cols=20 Identities=10% Similarity=0.101 Sum_probs=17.0
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
+-+|+|+||++|..++.+..
T Consensus 80 ~~~VLeiG~G~G~~~~~la~ 99 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATAL 99 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHH
T ss_pred cCEEEEeCCCcCHHHHHHHH
Confidence 45999999999999987654
No 269
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=46.42 E-value=14 Score=33.49 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=18.9
Q ss_pred HHhHHHHHHhhhhhhccCceEEEEec
Q 040129 166 AKDLERFLNNRAKEIVPGGMIIITNP 191 (333)
Q Consensus 166 ~~D~~~FL~~Ra~EL~~GG~mvl~~~ 191 (333)
-.++..+++.=.+-|+|||.+++...
T Consensus 73 l~~l~~~~~~~~rvLk~~G~l~i~~~ 98 (297)
T 2zig_A 73 LDELDRVWREVFRLLVPGGRLVIVVG 98 (297)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence 34455566655677999999999875
No 270
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=45.85 E-value=30 Score=31.30 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=23.2
Q ss_pred EEEEeecCCCCcccHHHH------------HHHHHHHHHHhhh
Q 040129 32 IRLADCGCAVGPNTFNAM------------QDLIEIVKHKYKS 62 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~------------~~ii~~i~~~~~~ 62 (333)
-+|+|+||++|..++.+. ...++..+++...
T Consensus 237 ~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~ 279 (297)
T 2zig_A 237 DVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFAR 279 (297)
T ss_dssp CEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHH
Confidence 489999999999998877 3456666655544
No 271
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=45.09 E-value=11 Score=36.32 Aligned_cols=98 Identities=10% Similarity=0.010 Sum_probs=54.6
Q ss_pred hhhhhHHHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCc
Q 040129 4 TNVTKDHIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSND 83 (333)
Q Consensus 4 ~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~ND 83 (333)
.+.+.=.|+||+..........+....-.+++|+|||.|.=|-.+++. ...|+--|.-.-|
T Consensus 185 pSRa~lKL~Ea~~~F~~~~~~~~~l~~G~~vlDLGAaPGGWT~~l~~r-------------------g~~V~aVD~~~l~ 245 (375)
T 4auk_A 185 PSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKR-------------------NMWVYSVDNGPMA 245 (375)
T ss_dssp SCTTHHHHHHHHHHHSCGGGHHHHSCTTCEEEEETCTTCHHHHHHHHT-------------------TCEEEEECSSCCC
T ss_pred CCHHHHHHHHHHHhccchhhhhccCCCCCEEEEeCcCCCHHHHHHHHC-------------------CCEEEEEEhhhcC
Confidence 345555688998765321100000133489999999999999765531 1346777743222
Q ss_pred hHHHhhcCCccccceeeccCcccccccCCCCceeEEEecccccc
Q 040129 84 FNTLFTSLPQEIHFFVAGVPGSFHKRLFPEKFLHLVHVSYALHW 127 (333)
Q Consensus 84 Fn~lF~~l~~~~~~f~~~vpgSFy~rlfP~~Sv~~~~Ss~alHW 127 (333)
-.. .. ..+ +.-+-+..+....+.+.+|.++|=.+.+|
T Consensus 246 ~~l--~~---~~~--V~~~~~d~~~~~~~~~~~D~vvsDm~~~p 282 (375)
T 4auk_A 246 QSL--MD---TGQ--VTWLREDGFKFRPTRSNISWMVCDMVEKP 282 (375)
T ss_dssp HHH--HT---TTC--EEEECSCTTTCCCCSSCEEEEEECCSSCH
T ss_pred hhh--cc---CCC--eEEEeCccccccCCCCCcCEEEEcCCCCh
Confidence 111 11 111 22234566666667778999998665543
No 272
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=44.87 E-value=6.5 Score=35.34 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=16.2
Q ss_pred EEEEeecCCCCcccHHHH
Q 040129 32 IRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~ 49 (333)
-+|+|+||++|..|+.+.
T Consensus 85 ~~VLDlgcG~G~~a~~lA 102 (258)
T 2r6z_A 85 PTVWDATAGLGRDSFVLA 102 (258)
T ss_dssp CCEEETTCTTCHHHHHHH
T ss_pred CeEEEeeCccCHHHHHHH
Confidence 579999999999998876
No 273
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=44.83 E-value=19 Score=33.31 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=15.7
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
.-+|+|+||++|..++. .
T Consensus 196 ~~~VLDlg~G~G~~~l~-a 213 (336)
T 2yx1_A 196 NDVVVDMFAGVGPFSIA-C 213 (336)
T ss_dssp TCEEEETTCTTSHHHHH-T
T ss_pred CCEEEEccCccCHHHHh-c
Confidence 46899999999999887 5
No 274
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=44.62 E-value=43 Score=31.23 Aligned_cols=44 Identities=7% Similarity=0.030 Sum_probs=28.7
Q ss_pred EEEEeecCCCCcccHHHH------------HHHHHHHHHHhhhcCCCCCCCcceEEecCC
Q 040129 32 IRLADCGCAVGPNTFNAM------------QDLIEIVKHKYKSQCPNSQNPEFHVSFNDQ 79 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDl 79 (333)
-+|+|+||++|..|+.+. ...++..++.....+ ...++++..|.
T Consensus 215 ~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng----~~~v~~~~~d~ 270 (369)
T 3bt7_A 215 GDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANH----IDNVQIIRMAA 270 (369)
T ss_dssp SEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTT----CCSEEEECCCS
T ss_pred CEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcC----CCceEEEECCH
Confidence 469999999999999765 345555555544432 12456666554
No 275
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=44.34 E-value=8.7 Score=35.48 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=16.1
Q ss_pred cEEEEeecCCCCcccHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~ 49 (333)
.-+|.|||||.|..|..++
T Consensus 91 ~~~VLDLGaAPGGWsQvAa 109 (282)
T 3gcz_A 91 TGIVVDLGCGRGGWSYYAA 109 (282)
T ss_dssp CEEEEEETCTTCHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHH
Confidence 4589999999999987655
No 276
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=42.74 E-value=15 Score=34.43 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhhcccCCCCCCcEEEEeecCCCCcccHH
Q 040129 9 DHIHDAIIRKLDVKSLADSSSNTIRLADCGCAVGPNTFN 47 (333)
Q Consensus 9 ~~l~~ai~~~~~~~~~~~~~~~~~~IaD~GCs~G~Ns~~ 47 (333)
-.|++++.. ..+ .+ .-+|.|||||.|..|..
T Consensus 81 ~KL~ei~~~-~~l------~~-~~~VlDLGaapGGwsq~ 111 (321)
T 3lkz_A 81 AKLRWLVER-RFL------EP-VGKVIDLGCGRGGWCYY 111 (321)
T ss_dssp HHHHHHHHT-TSC------CC-CEEEEEETCTTCHHHHH
T ss_pred HHHHHHHHh-cCC------CC-CCEEEEeCCCCCcHHHH
Confidence 346666665 221 23 34999999999999854
No 277
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=42.66 E-value=19 Score=32.78 Aligned_cols=18 Identities=28% Similarity=0.519 Sum_probs=15.0
Q ss_pred cEEEEeecCCCCcccHHH
Q 040129 31 TIRLADCGCAVGPNTFNA 48 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~ 48 (333)
..+|.|||||.|..|.-+
T Consensus 79 g~~VvDLGaapGGWSq~~ 96 (267)
T 3p8z_A 79 EGRVIDLGCGRGGWSYYC 96 (267)
T ss_dssp CEEEEEESCTTSHHHHHH
T ss_pred CCEEEEcCCCCCcHHHHH
Confidence 359999999999998543
No 278
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=39.27 E-value=34 Score=31.44 Aligned_cols=20 Identities=20% Similarity=0.140 Sum_probs=17.3
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
.-+|+|+||+.|.-|+.+.+
T Consensus 103 g~~VLDlcaG~G~kt~~la~ 122 (309)
T 2b9e_A 103 GSHVIDACAAPGNKTSHLAA 122 (309)
T ss_dssp TCEEEESSCTTCHHHHHHHH
T ss_pred CCEEEEeCCChhHHHHHHHH
Confidence 36899999999999988764
No 279
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=37.42 E-value=13 Score=35.22 Aligned_cols=27 Identities=19% Similarity=0.429 Sum_probs=21.4
Q ss_pred HHhHHHHHHhhhhhhccCceEEEEecC
Q 040129 166 AKDLERFLNNRAKEIVPGGMIIITNPS 192 (333)
Q Consensus 166 ~~D~~~FL~~Ra~EL~~GG~mvl~~~g 192 (333)
.+++..+++.=.+-|+|||.+++....
T Consensus 307 ~~~~~~ll~~~~~~L~pgG~l~~~~~~ 333 (385)
T 2b78_A 307 SKDYHKLIRQGLEILSENGLIIASTNA 333 (385)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 356667777778999999999988743
No 280
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=36.20 E-value=27 Score=32.43 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=18.2
Q ss_pred CCcEEEEeecCCCCcccHHHHH
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~ 50 (333)
...-+++|||||.|..|-.+++
T Consensus 80 ~~g~~vlDLGaaPGgWsqva~~ 101 (300)
T 3eld_A 80 RITGRVLDLGCGRGGWSYYAAA 101 (300)
T ss_dssp CCCEEEEEETCTTCHHHHHHHT
T ss_pred CCCCEEEEcCCCCCHHHHHHHH
Confidence 4468999999999999976664
No 281
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=35.84 E-value=34 Score=32.45 Aligned_cols=20 Identities=15% Similarity=-0.007 Sum_probs=17.3
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
..+|+|+||++|.-++.+..
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~ 67 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFAL 67 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHH
Confidence 36899999999999998774
No 282
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=35.07 E-value=17 Score=32.49 Aligned_cols=21 Identities=0% Similarity=-0.292 Sum_probs=16.0
Q ss_pred CCcEEEEeecCCCCcccHHHH
Q 040129 29 SNTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~ 49 (333)
+++-+|+|+||++|..+..++
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll 91 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLF 91 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHT
T ss_pred CCCCEEEEEeCCcCHHHHHHH
Confidence 345799999999997765443
No 283
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=28.60 E-value=1e+02 Score=24.67 Aligned_cols=62 Identities=19% Similarity=0.208 Sum_probs=38.3
Q ss_pred ceeecCCCHHHHHHHHHHHHHhHHHHH-Hhhhhhhcc-CceEEEEecCCCCCCCCccchhhHHHHHHHHHHHHHHhc
Q 040129 147 RIHYAFAPEVVVKAYANQFAKDLERFL-NNRAKEIVP-GGMIIITNPSIPDGMPFSEIANGLMYNCMGTILYDMVKV 221 (333)
Q Consensus 147 ~i~~~~~~~~v~~ay~~Q~~~D~~~FL-~~Ra~EL~~-GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~~mv~e 221 (333)
.|.|.+-|+.|.|..++.+++=-..|= ..-++-+-+ .|.|++.|-|.+ .+.++++|.+|..+
T Consensus 44 ~i~itgvpeqvrkelakeaerl~~efni~v~y~imgsgsgvm~i~f~gdd-------------lea~ekalkemirq 107 (170)
T 4hhu_A 44 VIVITGVPEQVRKELAKEAERLKAEFNINVQYQIMGSGSGVMVIVFEGDD-------------LEALEKALKEMIRQ 107 (170)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEEECSC-------------HHHHHHHHHHHHHH
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEEeCCceEEEEEEecCc-------------HHHHHHHHHHHHHH
Confidence 466666688888887776654332221 112222333 477888886632 47889999999876
No 284
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=28.26 E-value=36 Score=31.62 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=20.4
Q ss_pred CCcEEEEeecCCCCcccHHHHHHH
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQDL 52 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~i 52 (333)
...++|+|+|=++|-|++..+...
T Consensus 95 ~~~~~IlE~GFGTGLNfl~t~~~~ 118 (308)
T 3vyw_A 95 RKVIRILDVGFGLGYNLAVALKHL 118 (308)
T ss_dssp CSEEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCcEEEEeCCCccHHHHHHHHHH
Confidence 557999999999999998877543
No 285
>2lmc_A Bacterial RNA polymerase inhibitor; transferase, transcription; NMR {Enterobacteria phage T7} PDB: 2wnm_A
Probab=28.21 E-value=36 Score=25.16 Aligned_cols=30 Identities=33% Similarity=0.510 Sum_probs=24.8
Q ss_pred hcCCcCcccCCHHHHHHHHH----hCCcEEEeEEE
Q 040129 230 DSFNLPIYACPPGEFGAVVE----RNGNFRIEVMG 260 (333)
Q Consensus 230 d~fn~P~y~ps~~E~~~~ie----~~G~F~I~~le 260 (333)
.+|-+|+|..|.+|-.+.-| +.| |.|.++.
T Consensus 45 ~s~EVPV~A~sLdEAlE~AE~eYeeaG-F~V~RVR 78 (84)
T 2lmc_A 45 HSFEVPIYAETLDEALELAEWQYVPAG-FEVTRVR 78 (84)
T ss_dssp CEEEEEECCSSHHHHHHHHHHTTGGGT-CEEEEEE
T ss_pred ceEEEeeecccHHHHHHHHHHHhhhcc-ceEEEec
Confidence 46889999999999888877 457 9998875
No 286
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=28.16 E-value=20 Score=32.73 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=17.0
Q ss_pred CCcEEEEeecCCCCcccHHHH
Q 040129 29 SNTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~ 49 (333)
....+|.|||||.|.=|..+.
T Consensus 72 kpg~~VVDLGaAPGGWSQvAa 92 (269)
T 2px2_A 72 QPIGKVVDLGCGRGGWSYYAA 92 (269)
T ss_dssp CCCEEEEEETCTTSHHHHHHT
T ss_pred CCCCEEEEcCCCCCHHHHHHh
Confidence 346999999999999886554
No 287
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=24.74 E-value=33 Score=32.52 Aligned_cols=20 Identities=25% Similarity=0.217 Sum_probs=16.7
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
.-+|+|.||++|.-.+.+..
T Consensus 196 ~~~vlDp~CGSGt~lieaa~ 215 (385)
T 3ldu_A 196 GRVLVDPMCGSGTILIEAAM 215 (385)
T ss_dssp TSCEEETTCTTCHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHH
Confidence 46899999999998877754
No 288
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=24.66 E-value=90 Score=27.26 Aligned_cols=41 Identities=10% Similarity=0.078 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHh
Q 040129 207 MYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVER 250 (333)
Q Consensus 207 ~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~ 250 (333)
.|+-+-+-++.|+++|.|+++..+.+ .+..+++|+-+.+++
T Consensus 172 ~w~~l~~~l~~~~~~Gfi~~~~~~~~---~~~~~~~e~~~~l~~ 212 (217)
T 1wek_A 172 YWEGLVRWLAFLRDQKAVGPEDLQLF---RLTDEPEEVVQALKA 212 (217)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTGGGGS---EEESCHHHHHHHHHC
T ss_pred cchhHHHHHHHHHHCCCCCHHHcCeE---EEeCCHHHHHHHHHH
Confidence 67777777789999999998877644 788999999888864
No 289
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=24.18 E-value=23 Score=31.86 Aligned_cols=19 Identities=16% Similarity=0.309 Sum_probs=17.2
Q ss_pred EEEEeecCCCCcccHHHHH
Q 040129 32 IRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 32 ~~IaD~GCs~G~Ns~~~~~ 50 (333)
-+|.|+||+.|.-++.+.+
T Consensus 90 ~~VLDl~~G~G~dal~lA~ 108 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLAS 108 (258)
T ss_dssp CCEEETTCTTCHHHHHHHH
T ss_pred CEEEEcCCcCCHHHHHHHH
Confidence 6899999999999998874
No 290
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=24.16 E-value=38 Score=34.43 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.8
Q ss_pred CCcEEEEeecCCCCcccHHHHHH
Q 040129 29 SNTIRLADCGCAVGPNTFNAMQD 51 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~~~ 51 (333)
.+.++|+|.|.++|-|.+.+++.
T Consensus 57 ~~~~~i~e~gfG~G~n~l~~~~~ 79 (689)
T 3pvc_A 57 QQSCIFAETGFGTGLNFLTLWRD 79 (689)
T ss_dssp SSEEEEEEECCTTSHHHHHHHHH
T ss_pred CCceEEEEecCchHHHHHHHHHH
Confidence 56899999999999999999865
No 291
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=22.59 E-value=64 Score=28.20 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHh
Q 040129 207 MYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVER 250 (333)
Q Consensus 207 ~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~ 250 (333)
.|+-|.+-++.|+++|.|+++..+. -.+..+++|+-+.|++
T Consensus 150 ~w~~l~~~l~~~~~~Gfi~~~~~~~---~~~~d~~ee~~~~l~~ 190 (215)
T 2a33_A 150 YYNSLLSFIDKAVEEGFISPTAREI---IVSAPTAKELVKKLEE 190 (215)
T ss_dssp TTHHHHHHHHHHHHHTSSCHHHHTT---EEEESSHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHcCCCCHHHCCe---EEEeCCHHHHHHHHHH
Confidence 5677777778999999999887654 5678999999999875
No 292
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=21.91 E-value=93 Score=29.51 Aligned_cols=21 Identities=10% Similarity=-0.086 Sum_probs=18.1
Q ss_pred CCcEEEEeecCCCCcccHHHH
Q 040129 29 SNTIRLADCGCAVGPNTFNAM 49 (333)
Q Consensus 29 ~~~~~IaD~GCs~G~Ns~~~~ 49 (333)
+++-+|+|+||++|..+..++
T Consensus 187 p~pkrVL~IGgG~G~~arell 207 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIV 207 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHH
T ss_pred CCCCEEEEEECChhHHHHHHH
Confidence 567899999999999887765
No 293
>3mf7_A CIS-3-chloroacrylic acid dehalogenase; beta-alpha-beta motif, tautomerase, CIS-3-CHLO acid dehalogenase, isomerase, hydrolase; HET: PR4; 1.65A {Coryneform bacterium} PDB: 3mf8_A 2flt_A 2flz_A
Probab=21.78 E-value=1.1e+02 Score=25.09 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=30.5
Q ss_pred CCcccHHHHHHHHHHHHHHhhhcCCCCCCCcceEEecCCCCCch
Q 040129 41 VGPNTFNAMQDLIEIVKHKYKSQCPNSQNPEFHVSFNDQSSNDF 84 (333)
Q Consensus 41 ~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlP~NDF 84 (333)
.|+-|-.--+++.+.|.+.+.... +.++-.++|++.|+|.++|
T Consensus 9 ~~~~t~eqK~aLa~~It~a~~e~~-~vP~~~v~Vif~e~~~~~~ 51 (149)
T 3mf7_A 9 QDRLTPSAKHAVAKAITDAHRGLT-GTQHFLAQVNFQEQPAGNV 51 (149)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHTC-CTTCCCCEEEEEEECTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH-CcChHHEEEEEEEcCccce
Confidence 456666667788888888776532 2345568888999888775
No 294
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=20.85 E-value=53 Score=28.43 Aligned_cols=41 Identities=20% Similarity=0.159 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhccCCCHhhhhcCCcCcccCCHHHHHHHHHh
Q 040129 207 MYNCMGTILYDMVKVGLLSEAQVDSFNLPIYACPPGEFGAVVER 250 (333)
Q Consensus 207 ~~~~l~~~l~~mv~eG~i~~~~~d~fn~P~y~ps~~E~~~~ie~ 250 (333)
.|+-+-+-++.|+++|.|+++..+. -.+..+++|+-+.|++
T Consensus 158 fw~~l~~~l~~~~~~Gfi~~~~~~~---i~~~d~~~e~~~~l~~ 198 (199)
T 3qua_A 158 HYDGLLTWLRGLVPTGYVSQRAMDS---LVVVDNVEAALEACAP 198 (199)
T ss_dssp TTHHHHHHHHHTTTTTSSCHHHHHT---SEEESSHHHHHHHHSC
T ss_pred cchHHHHHHHHHHHCCCCCHHHCCe---EEEeCCHHHHHHHHhc
Confidence 5777777778999999999887654 4577899999888864
No 295
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=20.81 E-value=46 Score=31.62 Aligned_cols=20 Identities=20% Similarity=0.198 Sum_probs=16.4
Q ss_pred cEEEEeecCCCCcccHHHHH
Q 040129 31 TIRLADCGCAVGPNTFNAMQ 50 (333)
Q Consensus 31 ~~~IaD~GCs~G~Ns~~~~~ 50 (333)
.-+|+|.||++|.-.+.+..
T Consensus 202 ~~~vlDp~CGSGt~~ieaa~ 221 (393)
T 3k0b_A 202 DRPFYDPVCGSGTIPIEAAL 221 (393)
T ss_dssp TSCEEETTCTTSHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHH
Confidence 46799999999988777654
No 296
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=20.39 E-value=37 Score=25.55 Aligned_cols=42 Identities=10% Similarity=0.077 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhccCCCHh----hhhcCCcCcccCCHHHHHHHHHh
Q 040129 209 NCMGTILYDMVKVGLLSEA----QVDSFNLPIYACPPGEFGAVVER 250 (333)
Q Consensus 209 ~~l~~~l~~mv~eG~i~~~----~~d~fn~P~y~ps~~E~~~~ie~ 250 (333)
..+..+|..|.++|+|... .-.......|..+.+++...++.
T Consensus 48 ~tV~~~L~~L~~~GlV~~~~~~~~~~g~~v~~~~~~~~~i~~~~~~ 93 (110)
T 1q1h_A 48 NDVRKKLNLLEEQGFVSYRKTRDKDSGWFIYYWKPNIDQINEILLN 93 (110)
T ss_dssp HHHHHHHHHHHHHTSCEEEEEC---CCCCEEEEECTHHHHC-----
T ss_pred HHHHHHHHHHHHCCCEEEEecccCCCceEEEEeecCHHHHHHHHHH
Confidence 5678889999999999765 33334444457788887776653
Done!