SKIP2 protein (Arabidopsis thaliana)

STRING 9.05

SKIP2 protein (Arabidopsis thaliana) - STRING network view

This is the evidence view. Different line colors represent the types of evidence for the association.




confidence	evidence	actions	interactive	advanced	more	less	save

Your Input:
	SKIP2	SKIP2 (SKP1/ASK1 INTERACTING PROTEIN 2); ubiquitin-protein ligase; Encodes an SKP1 interacting partner (SKIP2).Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB1,2, and 3. When expression of all 4 genes is reduced plants show defects in growth and reduced expression of auxin response genes. ; Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity) (527 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	SKP1	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1); protein binding / ubiquitin-protein ligase; SKP1 is [...] (160 aa)	•	•	0.937
	ASK2	ASK2 (ARABIDOPSIS SKP1-LIKE 2); protein binding / ubiquitin-protein ligase; Similar to SKP1 in [...] (171 aa)	•		0.813
	ASK11	ASK11 (ARABIDOPSIS SKP1-LIKE 11); protein binding / ubiquitin-protein ligase; one of 20 SKP1 ho [...] (152 aa)	•		0.675
	SKIP4	SKIP4 (SKP1 INTERACTING PARTNER 4); Encodes an SKP1 interacting partner (SKIP4). (358 aa)		•	0.627
	SKIP6	SKIP6 (SKP1 interacting partner 6); ubiquitin-protein ligase; Encodes an SKP1 interacting partn [...] (372 aa)		•	0.627
	AT4G08670	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; protease inhibitor [...] (208 aa)		•	0.589
	AT2G31550	GDSL-motif lipase/hydrolase family protein; GDSL-motif lipase/hydrolase family protein; FUNCTIO [...] (219 aa)		•	0.577
	AT2G31540	GDSL-motif lipase/hydrolase family protein; GDSL-motif lipase/hydrolase family protein; FUNCTIO [...] (360 aa)		•	0.577
	SKIP5	SKIP5 (SKP1/ASK-INTERACTING PROTEIN 5); Encodes an SKP1 interacting partner (SKIP5). (274 aa)		•	0.575
	RPS25B	40S ribosomal protein S25 (RPS25E); 40S ribosomal protein S25 (RPS25E); FUNCTIONS IN- structura [...] (108 aa)		•	0.508

Views:

Info & Parameters ...

Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:

Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining

required confidence (score):

interactors shown:

or custom value:

or custom limit:

additional (white) nodes

Server load: low (40%)

Permalink