Query 040130
Match_columns 147
No_of_seqs 106 out of 1424
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 08:11:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040130.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040130hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 99.5 2.6E-15 8.9E-20 127.0 4.1 103 38-144 3-143 (594)
2 2ast_B S-phase kinase-associat 99.5 1E-14 3.5E-19 115.7 5.8 49 38-86 6-56 (336)
3 3ogk_B Coronatine-insensitive 99.4 6.2E-14 2.1E-18 118.7 3.5 66 43-110 15-81 (592)
4 1fs1_A SKP2 F-BOX, cyclin A/CD 99.3 1.1E-12 3.8E-17 79.6 1.6 46 38-83 6-53 (53)
5 3e4g_A ATP synthase subunit S, 98.7 1.9E-08 6.4E-13 75.4 4.8 63 80-146 88-154 (176)
6 3e4g_A ATP synthase subunit S, 98.6 8.9E-09 3.1E-13 77.2 1.9 63 80-147 64-130 (176)
7 2e31_A FBS1, F-box only protei 98.5 1.7E-08 5.8E-13 81.4 0.6 45 38-82 48-95 (297)
8 3l2o_B F-box only protein 4; s 98.4 1.7E-08 5.6E-13 81.6 -1.2 46 39-84 3-50 (312)
9 2ovr_B FBW7, F-BOX/WD repeat p 98.3 8.7E-08 3E-12 77.7 0.6 47 37-83 15-63 (445)
10 1p22_A F-BOX/WD-repeat protein 98.3 3.1E-08 1.1E-12 80.4 -2.1 47 37-83 7-59 (435)
11 3v7d_B Cell division control p 98.3 9.6E-08 3.3E-12 77.5 0.4 48 37-84 11-61 (464)
12 3ogk_B Coronatine-insensitive 97.4 0.00052 1.8E-08 57.6 7.9 63 80-147 466-528 (592)
13 2ast_B S-phase kinase-associat 97.2 0.0011 3.8E-08 51.7 7.5 50 94-146 186-237 (336)
14 2p1m_B Transport inhibitor res 97.1 0.00065 2.2E-08 56.9 5.4 60 80-142 108-167 (594)
15 3un9_A NLR family member X1; l 95.2 0.02 6.9E-07 46.4 4.6 46 95-145 119-168 (372)
16 1io0_A Tropomodulin; LRR prote 95.1 0.035 1.2E-06 40.4 5.3 62 80-146 39-107 (185)
17 2ra8_A Uncharacterized protein 94.8 0.022 7.4E-07 46.3 3.7 42 100-146 277-321 (362)
18 1io0_A Tropomodulin; LRR prote 93.7 0.11 3.6E-06 37.7 5.3 63 80-146 68-137 (185)
19 3un9_A NLR family member X1; l 93.5 0.023 8E-07 46.0 1.5 39 100-142 153-194 (372)
20 1z7x_W Ribonuclease inhibitor; 93.5 0.18 6E-06 40.7 6.7 36 103-142 86-124 (461)
21 1z7x_W Ribonuclease inhibitor; 92.6 0.13 4.5E-06 41.5 4.6 41 97-141 222-266 (461)
22 1pgv_A TMD-1, tropomodulin TMD 92.5 0.1 3.4E-06 39.3 3.6 47 94-145 62-111 (197)
23 4ezg_A Putative uncharacterize 92.2 0.072 2.5E-06 38.5 2.5 42 100-146 110-151 (197)
24 2ca6_A RAN GTPase-activating p 92.0 0.23 7.9E-06 39.4 5.4 13 129-141 242-254 (386)
25 2ca6_A RAN GTPase-activating p 91.7 0.26 8.9E-06 39.1 5.4 41 97-141 239-284 (386)
26 2je0_A Acidic leucine-rich nuc 89.5 0.21 7.2E-06 34.1 2.6 44 94-141 80-123 (149)
27 1pgv_A TMD-1, tropomodulin TMD 89.4 0.65 2.2E-05 34.7 5.5 60 79-142 72-137 (197)
28 2ell_A Acidic leucine-rich nuc 89.0 0.17 5.7E-06 35.4 1.8 43 94-141 87-130 (168)
29 3goz_A Leucine-rich repeat-con 87.2 0.45 1.5E-05 37.6 3.5 59 80-142 54-120 (362)
30 2ra8_A Uncharacterized protein 86.6 0.42 1.5E-05 38.6 3.1 42 100-146 250-293 (362)
31 2je0_A Acidic leucine-rich nuc 85.9 0.4 1.4E-05 32.7 2.3 43 97-145 59-101 (149)
32 3goz_A Leucine-rich repeat-con 83.5 0.86 2.9E-05 35.9 3.5 17 41-57 34-50 (362)
33 3rw6_A Nuclear RNA export fact 81.2 0.78 2.7E-05 35.7 2.4 40 97-140 165-205 (267)
34 2ell_A Acidic leucine-rich nuc 78.4 0.39 1.3E-05 33.4 -0.2 43 97-143 115-159 (168)
35 4fmz_A Internalin; leucine ric 77.2 1.6 5.5E-05 33.6 3.1 40 98-142 283-322 (347)
36 4ezg_A Putative uncharacterize 77.0 0.4 1.4E-05 34.5 -0.5 39 98-141 84-122 (197)
37 4glp_A Monocyte differentiatio 75.4 2.7 9.1E-05 32.2 3.9 38 100-141 195-234 (310)
38 1wwl_A Monocyte differentiatio 71.0 5.1 0.00018 30.6 4.5 39 99-141 198-238 (312)
39 3o53_A Protein LRIM1, AGAP0063 67.7 2 7E-05 33.0 1.6 12 130-141 79-90 (317)
40 4fcg_A Uncharacterized protein 65.7 1.4 4.7E-05 34.4 0.2 40 99-144 124-163 (328)
41 4fmz_A Internalin; leucine ric 63.8 2.5 8.4E-05 32.5 1.3 12 130-141 131-142 (347)
42 4glp_A Monocyte differentiatio 63.6 1.9 6.7E-05 32.9 0.7 14 128-141 194-207 (310)
43 1a9n_A U2A', U2A'; complex (nu 61.6 2.2 7.7E-05 29.8 0.7 39 99-141 110-150 (176)
44 1ds9_A Outer arm dynein; leuci 61.5 2.9 9.9E-05 29.8 1.3 12 126-137 169-180 (198)
45 1ozn_A Reticulon 4 receptor; N 61.4 1.4 4.7E-05 33.2 -0.5 41 97-141 75-115 (285)
46 3o53_A Protein LRIM1, AGAP0063 60.9 1.3 4.4E-05 34.2 -0.8 37 101-141 143-179 (317)
47 1wwl_A Monocyte differentiatio 59.0 6 0.00021 30.2 2.8 14 128-141 198-211 (312)
48 4fcg_A Uncharacterized protein 58.4 3.4 0.00012 32.1 1.3 14 129-142 227-240 (328)
49 1xeu_A Internalin C; cellular 55.9 3.7 0.00013 30.8 1.1 13 129-141 83-95 (263)
50 2z62_A TOLL-like receptor 4, v 55.3 1.7 5.9E-05 32.5 -0.9 39 99-141 121-159 (276)
51 1h6u_A Internalin H; cell adhe 55.1 4.1 0.00014 31.3 1.2 37 98-141 81-117 (308)
52 1a9n_A U2A', U2A'; complex (nu 54.9 10 0.00035 26.2 3.3 41 96-141 82-123 (176)
53 2z63_A TOLL-like receptor 4, v 54.8 1.3 4.5E-05 36.4 -1.8 12 130-141 493-504 (570)
54 1ogq_A PGIP-2, polygalacturona 54.7 1.1 3.9E-05 34.5 -2.1 12 130-141 148-159 (313)
55 2z81_A CD282 antigen, TOLL-lik 52.8 13 0.00044 30.3 4.0 15 127-141 383-397 (549)
56 1h6u_A Internalin H; cell adhe 52.7 5.5 0.00019 30.5 1.6 12 130-141 172-183 (308)
57 2z66_A Variable lymphocyte rec 51.2 1.3 4.4E-05 33.7 -2.2 13 129-141 221-233 (306)
58 1h6t_A Internalin B; cell adhe 50.4 5.2 0.00018 30.5 1.1 13 129-141 176-188 (291)
59 2xwt_C Thyrotropin receptor; s 50.1 1.3 4.3E-05 32.6 -2.4 39 99-141 77-115 (239)
60 2z7x_B TOLL-like receptor 1, v 49.9 3.6 0.00012 33.6 0.1 38 97-142 64-101 (520)
61 1o6v_A Internalin A; bacterial 49.7 6.7 0.00023 31.7 1.7 13 129-141 329-341 (466)
62 2z66_A Variable lymphocyte rec 49.5 1.5 5.3E-05 33.2 -2.1 12 130-141 198-209 (306)
63 2z80_A TOLL-like receptor 2, v 48.5 6.4 0.00022 30.4 1.4 13 129-141 147-159 (353)
64 2o6s_A Variable lymphocyte rec 48.2 3.2 0.00011 29.6 -0.4 40 97-141 71-110 (208)
65 3oja_A Leucine-rich immune mol 48.2 3 0.0001 34.5 -0.6 38 100-141 142-179 (487)
66 3rfs_A Internalin B, repeat mo 47.7 5.7 0.0002 29.7 1.0 38 99-141 82-119 (272)
67 2z80_A TOLL-like receptor 2, v 47.4 27 0.00092 26.8 4.9 25 117-141 260-287 (353)
68 3v47_A TOLL-like receptor 5B a 47.2 7.2 0.00025 31.0 1.5 14 128-141 151-164 (455)
69 1h6t_A Internalin B; cell adhe 47.1 6.4 0.00022 29.9 1.2 37 98-141 86-122 (291)
70 2z81_A CD282 antigen, TOLL-lik 46.9 18 0.00062 29.4 4.0 40 98-141 330-371 (549)
71 2z7x_B TOLL-like receptor 1, v 46.7 19 0.00065 29.2 4.0 39 99-141 345-384 (520)
72 3v47_A TOLL-like receptor 5B a 45.9 3.4 0.00012 33.0 -0.6 58 80-142 82-140 (455)
73 1xeu_A Internalin C; cellular 45.3 6.6 0.00023 29.4 1.0 36 99-141 125-160 (263)
74 1ziw_A TOLL-like receptor 3; i 45.0 7.5 0.00025 32.8 1.4 42 95-141 66-107 (680)
75 1ozn_A Reticulon 4 receptor; N 44.8 7.7 0.00026 28.9 1.3 14 128-141 222-235 (285)
76 1m9s_A Internalin B; cell inva 44.6 6.8 0.00023 33.6 1.0 11 130-140 174-184 (605)
77 3o6n_A APL1; leucine-rich repe 44.4 3.3 0.00011 32.6 -0.9 13 129-141 115-127 (390)
78 2z63_A TOLL-like receptor 4, v 43.9 2.2 7.6E-05 35.0 -2.1 14 128-141 467-480 (570)
79 2ifg_A High affinity nerve gro 43.9 2.5 8.4E-05 32.7 -1.7 12 99-110 77-88 (347)
80 3e6j_A Variable lymphocyte rec 43.6 5.6 0.00019 29.1 0.3 14 128-141 132-145 (229)
81 1m9s_A Internalin B; cell inva 43.5 7.4 0.00025 33.3 1.1 36 99-141 128-163 (605)
82 1xku_A Decorin; proteoglycan, 41.5 4.2 0.00014 31.1 -0.7 12 99-110 213-224 (330)
83 1w8a_A SLIT protein; signaling 41.3 4.6 0.00016 28.7 -0.5 40 97-141 73-112 (192)
84 3rgz_A Protein brassinosteroid 41.0 9.4 0.00032 33.2 1.4 39 99-142 220-258 (768)
85 2ft3_A Biglycan; proteoglycan, 41.0 3.9 0.00013 31.4 -1.0 12 99-110 75-86 (332)
86 3zyj_A Leucine-rich repeat-con 41.0 4.2 0.00014 32.7 -0.8 13 129-141 134-146 (440)
87 2wfh_A SLIT homolog 2 protein 40.8 4.7 0.00016 28.8 -0.5 40 97-141 73-112 (193)
88 3g39_A Variable lymphocyte rec 40.4 4.9 0.00017 28.1 -0.4 38 98-140 74-111 (170)
89 2id5_A Lingo-1, leucine rich r 40.3 3.7 0.00013 33.1 -1.2 41 97-142 75-115 (477)
90 3rgz_A Protein brassinosteroid 40.2 4.5 0.00015 35.2 -0.8 13 129-141 176-188 (768)
91 3m19_A Variable lymphocyte rec 39.6 4.2 0.00014 30.0 -1.0 39 98-141 79-117 (251)
92 1o6v_A Internalin A; bacterial 39.4 9.7 0.00033 30.7 1.2 37 98-141 86-122 (466)
93 4g8a_A TOLL-like receptor 4; l 39.3 4 0.00014 33.7 -1.2 40 97-141 95-134 (635)
94 2v70_A SLIT-2, SLIT homolog 2 39.1 5.3 0.00018 29.1 -0.5 40 97-141 100-139 (220)
95 3vq2_A TLR4, TOLL-like recepto 39.0 3 0.0001 34.7 -2.1 12 130-141 496-507 (606)
96 2o6r_A Variable lymphocyte rec 38.8 5.4 0.00018 27.6 -0.4 40 97-141 71-110 (177)
97 1xku_A Decorin; proteoglycan, 37.7 7.8 0.00027 29.6 0.3 39 97-141 235-273 (330)
98 2v9t_B SLIT homolog 2 protein 37.6 6 0.0002 28.8 -0.4 39 98-141 100-138 (220)
99 3rw6_A Nuclear RNA export fact 37.6 5.9 0.0002 30.7 -0.4 16 95-110 189-204 (267)
100 3zyi_A Leucine-rich repeat-con 37.4 4.9 0.00017 32.4 -0.9 12 130-141 195-206 (452)
101 1ogq_A PGIP-2, polygalacturona 36.9 5.6 0.00019 30.5 -0.7 10 132-141 175-184 (313)
102 3zyi_A Leucine-rich repeat-con 36.8 4.8 0.00016 32.4 -1.1 13 129-141 145-157 (452)
103 3j0a_A TOLL-like receptor 5; m 36.6 2.4 8.1E-05 37.4 -3.2 41 98-142 93-134 (844)
104 3zyj_A Leucine-rich repeat-con 36.6 5.2 0.00018 32.1 -0.9 12 130-141 184-195 (440)
105 3oja_A Leucine-rich immune mol 36.5 4.8 0.00016 33.2 -1.2 38 97-141 53-90 (487)
106 3t6q_A CD180 antigen; protein- 35.7 4.6 0.00016 33.6 -1.4 40 97-141 76-115 (606)
107 2ft3_A Biglycan; proteoglycan, 35.6 9.5 0.00032 29.2 0.5 14 128-141 261-274 (332)
108 2o6q_A Variable lymphocyte rec 35.4 5.8 0.0002 29.6 -0.8 13 129-141 179-191 (270)
109 2r9u_A Variable lymphocyte rec 35.1 5.8 0.0002 27.9 -0.8 40 97-141 76-115 (174)
110 3o6n_A APL1; leucine-rich repe 34.6 5.8 0.0002 31.1 -0.9 12 130-141 294-305 (390)
111 4eco_A Uncharacterized protein 33.9 37 0.0013 28.7 4.0 12 130-141 304-315 (636)
112 3oja_B Anopheles plasmodium-re 32.4 6.7 0.00023 33.0 -0.9 38 99-141 96-133 (597)
113 3vq2_A TLR4, TOLL-like recepto 32.3 6.6 0.00022 32.6 -1.0 13 129-141 151-163 (606)
114 4ecn_A Leucine-rich repeat pro 31.5 47 0.0016 29.9 4.4 13 129-141 546-558 (876)
115 4b8c_D Glucose-repressible alc 31.4 9.4 0.00032 33.3 -0.2 13 129-141 291-303 (727)
116 4eco_A Uncharacterized protein 29.4 19 0.00066 30.5 1.5 35 102-142 305-341 (636)
117 3a79_B TLR6, VLRB.59, TOLL-lik 29.3 7.5 0.00026 32.2 -1.1 13 129-141 119-131 (562)
118 2id5_A Lingo-1, leucine rich r 28.9 19 0.00066 28.8 1.3 11 130-140 175-185 (477)
119 4g8a_A TOLL-like receptor 4; l 28.9 8.4 0.00029 31.7 -0.9 13 129-141 171-183 (635)
120 1p9a_G Platelet glycoprotein I 28.7 9.9 0.00034 28.9 -0.5 39 98-141 96-134 (290)
121 3sb4_A Hypothetical leucine ri 27.8 24 0.00082 26.9 1.6 37 100-141 23-59 (329)
122 3t6q_A CD180 antigen; protein- 27.5 7.2 0.00025 32.3 -1.5 12 130-141 448-459 (606)
123 3oja_B Anopheles plasmodium-re 26.7 18 0.00062 30.3 0.8 14 128-141 321-334 (597)
124 2xot_A Amphoterin-induced prot 26.5 9.1 0.00031 29.9 -1.1 39 98-141 108-146 (361)
125 1dce_A Protein (RAB geranylger 26.4 17 0.00058 30.7 0.6 13 129-141 506-518 (567)
126 3j0a_A TOLL-like receptor 5; m 26.4 9.4 0.00032 33.6 -1.1 11 100-110 121-131 (844)
127 3bz5_A Internalin-J, INLJ; leu 26.1 18 0.00062 29.4 0.7 13 129-141 104-116 (457)
128 4b8c_D Glucose-repressible alc 24.5 14 0.00047 32.3 -0.4 36 100-141 245-280 (727)
129 3bz5_A Internalin-J, INLJ; leu 23.2 22 0.00075 28.9 0.6 14 129-142 146-159 (457)
130 3a79_B TLR6, VLRB.59, TOLL-lik 22.4 38 0.0013 27.9 1.9 39 99-141 374-413 (562)
131 1dce_A Protein (RAB geranylger 20.9 34 0.0012 28.9 1.4 39 98-141 504-543 (567)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.54 E-value=2.6e-15 Score=127.04 Aligned_cols=103 Identities=22% Similarity=0.481 Sum_probs=65.7
Q ss_pred CCCCCCCCHHHHHHHHHhCC-hHHHHHHhhhcccccccCCCcceeeeccchhhh--------------------------
Q 040130 38 RDFTGDLPDDCLAYIFQFLG-SGDRKRCSLVCKRWLRVDGGSRYRLSLNAQSEI-------------------------- 90 (147)
Q Consensus 38 ~~~~~~LP~elL~~If~~L~-~~dl~~~s~VCk~W~~~~~~~~~~l~l~~~~~~-------------------------- 90 (147)
.|.++.||+|++.+||+||+ .+|+.++++|||+|+.+....|+.+++..++..
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 82 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADF 82 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGG
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhc
Confidence 36788999999999999999 999999999999999886555555555432111
Q ss_pred -----------hhchHHHhhcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCCCC
Q 040130 91 -----------LSSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREI 144 (147)
Q Consensus 91 -----------~~~l~~l~~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C~~v 144 (147)
.+.+..+..++++|++|+|+ ...+++..+..+++.|++|++|+|++|..+
T Consensus 83 ~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~----~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 83 NLVPDGWGGYVYPWIEAMSSSYTWLEEIRLK----RMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp TCSCTTSCCBCHHHHHHHHHHCTTCCEEEEE----SCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred ccccccccchhhHHHHHHHHhCCCCCeEEee----CcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 01234455666777777776 223666666666666666666666666443
No 2
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.52 E-value=1e-14 Score=115.68 Aligned_cols=49 Identities=33% Similarity=0.416 Sum_probs=42.6
Q ss_pred CCCCCCCCHHHHHHHHHhCChHHHHHHhhhcccccccC--CCcceeeeccc
Q 040130 38 RDFTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVD--GGSRYRLSLNA 86 (147)
Q Consensus 38 ~~~~~~LP~elL~~If~~L~~~dl~~~s~VCk~W~~~~--~~~~~~l~l~~ 86 (147)
...++.||+|++.+||+||+..|+.++++|||+|+.+. +.+|+.++++.
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~ 56 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTG 56 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTT
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeecccc
Confidence 34457899999999999999999999999999999874 67899988864
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.41 E-value=6.2e-14 Score=118.74 Aligned_cols=66 Identities=24% Similarity=0.549 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHhC-ChHHHHHHhhhcccccccCCCcceeeeccchhhhhhchHHHhhcCccceeecee
Q 040130 43 DLPDDCLAYIFQFL-GSGDRKRCSLVCKRWLRVDGGSRYRLSLNAQSEILSSLPSVFSRFDSVTKLALR 110 (147)
Q Consensus 43 ~LP~elL~~If~~L-~~~dl~~~s~VCk~W~~~~~~~~~~l~l~~~~~~~~~l~~l~~r~~~L~~L~L~ 110 (147)
.||+|+|.+||+|| +.+|+.++++|||+|+.+....|+.+.+..++.. ....+..+|++|++|+|+
T Consensus 15 ~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~L~~L~L~ 81 (592)
T 3ogk_B 15 ATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTA--TPDRLSRRFPNLRSLKLK 81 (592)
T ss_dssp CCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGS--CHHHHHHHCTTCSEEEEE
T ss_pred CCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeecccc--ChHHHHHhCCCCeEEEec
Confidence 79999999999999 7999999999999999886544555554433221 123344444444444443
No 4
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.26 E-value=1.1e-12 Score=79.63 Aligned_cols=46 Identities=33% Similarity=0.407 Sum_probs=36.1
Q ss_pred CCCCCCCCHHHHHHHHHhCChHHHHHHhhhcccccccC--CCcceeee
Q 040130 38 RDFTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVD--GGSRYRLS 83 (147)
Q Consensus 38 ~~~~~~LP~elL~~If~~L~~~dl~~~s~VCk~W~~~~--~~~~~~l~ 83 (147)
...+..||+|++.+||+||+.+|+.++++|||+|+.+. ..+|+.++
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~ld 53 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLD 53 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC----
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhcC
Confidence 44577899999999999999999999999999999875 46888764
No 5
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.66 E-value=1.9e-08 Score=75.45 Aligned_cols=63 Identities=13% Similarity=0.156 Sum_probs=52.3
Q ss_pred eeeeccchhhhhh-chHHHhhc---CccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCCCCCC
Q 040130 80 YRLSLNAQSEILS-SLPSVFSR---FDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITD 146 (147)
Q Consensus 80 ~~l~l~~~~~~~~-~l~~l~~r---~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C~~vtD 146 (147)
+.++++.|..+++ .+..+... +++|++|+|+ +|..|||+++..|+ .|++|++|+|++|.++||
T Consensus 88 ~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls---~C~~ITD~Gl~~L~-~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 88 EKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEII---SCGNVTDKGIIALH-HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEE---SCTTCCHHHHHHGG-GCTTCCEEEEESCTTCCC
T ss_pred CEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcC---CCCcCCHHHHHHHh-cCCCCCEEECCCCCCCCc
Confidence 6788888877653 46666652 5689999999 79999999999998 589999999999999998
No 6
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.62 E-value=8.9e-09 Score=77.22 Aligned_cols=63 Identities=17% Similarity=0.310 Sum_probs=52.2
Q ss_pred eeeeccchhhhh-hchHHHhhcCccceeeceeccCCCCcccHHHHHHHHH---hCCCCcEEeccCCCCCCCC
Q 040130 80 YRLSLNAQSEIL-SSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISL---RCQKLTRLKLRGCREITDH 147 (147)
Q Consensus 80 ~~l~l~~~~~~~-~~l~~l~~r~~~L~~L~L~c~~~c~~itD~~L~~la~---~cp~L~~L~L~~C~~vtD~ 147 (147)
+.++++.+. ++ ..+..+ ..|++|++|+|+ +|..|||+++..|+. .|++|++|+|++|.+|||+
T Consensus 64 ~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~---~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 64 QAIDATDSC-IMSIGFDHM-EGLQYVEKIRLC---KCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp EEEEEESCC-CCGGGGGGG-TTCSCCCEEEEE---SCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred eEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeC---CCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 566777664 33 345554 689999999999 899999999999998 4889999999999999984
No 7
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.50 E-value=1.7e-08 Score=81.40 Aligned_cols=45 Identities=22% Similarity=0.424 Sum_probs=38.2
Q ss_pred CCCCCCCCHHHHHHHHHhCChHHHH-HHhhhcccccccCC--Ccceee
Q 040130 38 RDFTGDLPDDCLAYIFQFLGSGDRK-RCSLVCKRWLRVDG--GSRYRL 82 (147)
Q Consensus 38 ~~~~~~LP~elL~~If~~L~~~dl~-~~s~VCk~W~~~~~--~~~~~l 82 (147)
...+..||+|+|.+||.+|+.++|+ +|++|||+|+.++. .+|+..
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~ 95 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLK 95 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHH
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHH
Confidence 3567789999999999999999999 99999999998753 456543
No 8
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.43 E-value=1.7e-08 Score=81.62 Aligned_cols=46 Identities=22% Similarity=0.175 Sum_probs=39.8
Q ss_pred CCCCCCCHHHHHHHHHhCChHHHHHHhhhcccccccC--CCcceeeec
Q 040130 39 DFTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVD--GGSRYRLSL 84 (147)
Q Consensus 39 ~~~~~LP~elL~~If~~L~~~dl~~~s~VCk~W~~~~--~~~~~~l~l 84 (147)
..++.||+||+++||+||+++|++++++|||.|+.++ ..+|+.+-.
T Consensus 3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~ 50 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLL 50 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHH
T ss_pred chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHh
Confidence 3567899999999999999999999999999999875 467876543
No 9
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.32 E-value=8.7e-08 Score=77.75 Aligned_cols=47 Identities=23% Similarity=0.425 Sum_probs=40.9
Q ss_pred CCCCCCCCCHHHHHHHHHhCChHHHHHHhhhcccccccC--CCcceeee
Q 040130 37 ARDFTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVD--GGSRYRLS 83 (147)
Q Consensus 37 ~~~~~~~LP~elL~~If~~L~~~dl~~~s~VCk~W~~~~--~~~~~~l~ 83 (147)
..|.++.||+|++.+||+||+.+|++++++|||+|+.++ ..+|+++-
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~ 63 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKC 63 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhe
Confidence 468899999999999999999999999999999998875 34676543
No 10
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.32 E-value=3.1e-08 Score=80.45 Aligned_cols=47 Identities=34% Similarity=0.564 Sum_probs=41.5
Q ss_pred CCCCCCCCCHH----HHHHHHHhCChHHHHHHhhhcccccccC--CCcceeee
Q 040130 37 ARDFTGDLPDD----CLAYIFQFLGSGDRKRCSLVCKRWLRVD--GGSRYRLS 83 (147)
Q Consensus 37 ~~~~~~~LP~e----lL~~If~~L~~~dl~~~s~VCk~W~~~~--~~~~~~l~ 83 (147)
..|.+..||+| ++.+||+||+.++|+++++|||+|+.++ ..+|+++-
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~ 59 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLI 59 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 35778889999 9999999999999999999999999875 67888763
No 11
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.30 E-value=9.6e-08 Score=77.47 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=41.9
Q ss_pred CCCCCCCCCHHHHHHHHHhCChHHHHHHhhhcccccccC---CCcceeeec
Q 040130 37 ARDFTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVD---GGSRYRLSL 84 (147)
Q Consensus 37 ~~~~~~~LP~elL~~If~~L~~~dl~~~s~VCk~W~~~~---~~~~~~l~l 84 (147)
..|++..||+|++.+||+||+.++|+++++|||+|+.++ ..+|+++.+
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~ 61 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLI 61 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHH
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467888999999999999999999999999999998864 368887654
No 12
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.36 E-value=0.00052 Score=57.63 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=49.1
Q ss_pred eeeeccchhhhhhchHHHhhcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCCCCCCC
Q 040130 80 YRLSLNAQSEILSSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITDH 147 (147)
Q Consensus 80 ~~l~l~~~~~~~~~l~~l~~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C~~vtD~ 147 (147)
+.++++.+.--...+..+...+++|++|+|+ +|. +++.++..++..|++|++|+|++|. +|++
T Consensus 466 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~---~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 466 RWMLLGYVGESDEGLMEFSRGCPNLQKLEMR---GCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp CEEEECSCCSSHHHHHHHHTCCTTCCEEEEE---SCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred eEeeccCCCCCHHHHHHHHhcCcccCeeecc---CCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence 5666665431122466777889999999999 566 8999999999999999999999997 7763
No 13
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.18 E-value=0.0011 Score=51.70 Aligned_cols=50 Identities=20% Similarity=0.352 Sum_probs=31.8
Q ss_pred hHHHhhcCc-cceeeceeccCCCC-cccHHHHHHHHHhCCCCcEEeccCCCCCCC
Q 040130 94 LPSVFSRFD-SVTKLALRCDRKSI-SLDDDALVLISLRCQKLTRLKLRGCREITD 146 (147)
Q Consensus 94 l~~l~~r~~-~L~~L~L~c~~~c~-~itD~~L~~la~~cp~L~~L~L~~C~~vtD 146 (147)
+..++..++ +|++|+|+ +|. .++|.++..+...|++|++|+|++|..+++
T Consensus 186 ~~~~~~~l~~~L~~L~l~---~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 237 (336)
T 2ast_B 186 VQVAVAHVSETITQLNLS---GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN 237 (336)
T ss_dssp HHHHHHHSCTTCCEEECC---SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG
T ss_pred HHHHHHhcccCCCEEEeC---CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH
Confidence 444555666 66666666 443 566666666666677777777777765553
No 14
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.06 E-value=0.00065 Score=56.95 Aligned_cols=60 Identities=22% Similarity=0.314 Sum_probs=47.1
Q ss_pred eeeeccchhhhhhchHHHhhcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCC
Q 040130 80 YRLSLNAQSEILSSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCR 142 (147)
Q Consensus 80 ~~l~l~~~~~~~~~l~~l~~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C~ 142 (147)
+.+++..+.-....+..+...|++|++|+|+ +|..+++.++..++..|++|++|+|++|.
T Consensus 108 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~---~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 108 EEIRLKRMVVTDDCLELIAKSFKNFKVLVLS---SCEGFSTDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp CEEEEESCBCCHHHHHHHHHHCTTCCEEEEE---SCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred CeEEeeCcEEcHHHHHHHHHhCCCCcEEeCC---CcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence 5566665432123355666679999999999 68789999999999999999999999986
No 15
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=95.18 E-value=0.02 Score=46.42 Aligned_cols=46 Identities=24% Similarity=0.229 Sum_probs=30.1
Q ss_pred HHHhhcCccceeeceeccCCCCcccHHHHHHHHH----hCCCCcEEeccCCCCCC
Q 040130 95 PSVFSRFDSVTKLALRCDRKSISLDDDALVLISL----RCQKLTRLKLRGCREIT 145 (147)
Q Consensus 95 ~~l~~r~~~L~~L~L~c~~~c~~itD~~L~~la~----~cp~L~~L~L~~C~~vt 145 (147)
..+...+.+|++|+|+ ...+++.+...++. .+++|++|+|++| +++
T Consensus 119 ~~l~~~L~~L~~L~Ls----~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~ 168 (372)
T 3un9_A 119 RTLLPVFLRARKLGLQ----LNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLT 168 (372)
T ss_dssp HHTHHHHHTEEEEECC----SSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCH
T ss_pred HHHHHHHHhccHhhcC----CCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCC
Confidence 3344445567777776 44677877777765 3577888888887 344
No 16
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.08 E-value=0.035 Score=40.37 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=43.6
Q ss_pred eeeeccchhhhh----hchHHHhhcCccceeeceeccCCCCcccHHHHHHHHH---hCCCCcEEeccCCCCCCC
Q 040130 80 YRLSLNAQSEIL----SSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISL---RCQKLTRLKLRGCREITD 146 (147)
Q Consensus 80 ~~l~l~~~~~~~----~~l~~l~~r~~~L~~L~L~c~~~c~~itD~~L~~la~---~cp~L~~L~L~~C~~vtD 146 (147)
+.+++.....+. ..+...+..+.+|++|+|+ ...|+|++...|++ ..+.|++|+|++| +++|
T Consensus 39 ~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls----~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~ 107 (185)
T 1io0_A 39 EEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIV----GTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISG 107 (185)
T ss_dssp CEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECT----TSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCH
T ss_pred CEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECc----CCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCH
Confidence 567776541221 2345555667889999998 56799998877765 5678999999887 5554
No 17
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=94.77 E-value=0.022 Score=46.34 Aligned_cols=42 Identities=12% Similarity=0.202 Sum_probs=35.3
Q ss_pred cCccceeeceeccCCCCcccHHHHHHHH---HhCCCCcEEeccCCCCCCC
Q 040130 100 RFDSVTKLALRCDRKSISLDDDALVLIS---LRCQKLTRLKLRGCREITD 146 (147)
Q Consensus 100 r~~~L~~L~L~c~~~c~~itD~~L~~la---~~cp~L~~L~L~~C~~vtD 146 (147)
.+++|++|+|+ +..++|.+...++ +++++|+.|+|++| .++|
T Consensus 277 ~~~~L~~LdLs----~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d 321 (362)
T 2ra8_A 277 ILPQLETMDIS----AGVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSD 321 (362)
T ss_dssp SGGGCSEEECC----SSCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCH
T ss_pred cCCCCCEEECC----CCCCChHHHHHHHhhcccCCcceEEECCCC-cCCH
Confidence 46899999998 6779999988887 46899999999988 5765
No 18
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=93.72 E-value=0.11 Score=37.75 Aligned_cols=63 Identities=10% Similarity=0.179 Sum_probs=44.9
Q ss_pred eeeeccchhhh---hhchHHHhhcCccceeeceeccCCCCcccHHHHHHHHH---hCCCCcEEecc-CCCCCCC
Q 040130 80 YRLSLNAQSEI---LSSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISL---RCQKLTRLKLR-GCREITD 146 (147)
Q Consensus 80 ~~l~l~~~~~~---~~~l~~l~~r~~~L~~L~L~c~~~c~~itD~~L~~la~---~cp~L~~L~L~-~C~~vtD 146 (147)
+.++++...-- ...+...+....+|++|+|+ ...|+|++...|++ .++.|++|+|+ ...+++|
T Consensus 68 ~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~----~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 68 KKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVE----SNFISGSGILALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECC----SSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred CEEECcCCCCChHHHHHHHHHHHhCCCcCEEECc----CCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 56777654211 12355556677899999998 67899999999886 46789999994 2346654
No 19
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=93.53 E-value=0.023 Score=46.04 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=28.0
Q ss_pred cCccceeeceeccCCCCcccHHHHHHHH---HhCCCCcEEeccCCC
Q 040130 100 RFDSVTKLALRCDRKSISLDDDALVLIS---LRCQKLTRLKLRGCR 142 (147)
Q Consensus 100 r~~~L~~L~L~c~~~c~~itD~~L~~la---~~cp~L~~L~L~~C~ 142 (147)
.+.+|++|+|+ .+.|++.+...++ ..+++|++|+|++|.
T Consensus 153 ~~~~L~~L~Ls----~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 153 DQCQITTLRLS----NNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG 194 (372)
T ss_dssp TTCCCCEEECC----SSCCHHHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred cCCccceeeCC----CCCCChHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence 45778888887 4467777777665 467788888888763
No 20
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=93.49 E-value=0.18 Score=40.68 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=19.7
Q ss_pred cceeeceeccCCCCcccHHHHHHHH---HhCCCCcEEeccCCC
Q 040130 103 SVTKLALRCDRKSISLDDDALVLIS---LRCQKLTRLKLRGCR 142 (147)
Q Consensus 103 ~L~~L~L~c~~~c~~itD~~L~~la---~~cp~L~~L~L~~C~ 142 (147)
+|++|+|+ ...+++.++..+. ..+++|++|+|++|.
T Consensus 86 ~L~~L~L~----~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 86 KIQKLSLQ----NCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp CCCEEECT----TSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred ceeEEEcc----CCCCCHHHHHHHHHHHccCCceeEEECCCCc
Confidence 56666666 3345554433333 356666666666653
No 21
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=92.55 E-value=0.13 Score=41.46 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=20.7
Q ss_pred HhhcCccceeeceeccCCCCcccHHHHHHHHH----hCCCCcEEeccCC
Q 040130 97 VFSRFDSVTKLALRCDRKSISLDDDALVLISL----RCQKLTRLKLRGC 141 (147)
Q Consensus 97 l~~r~~~L~~L~L~c~~~c~~itD~~L~~la~----~cp~L~~L~L~~C 141 (147)
.+..+++|++|+|+ ...+++.++..++. .+++|++|+|++|
T Consensus 222 ~l~~~~~L~~L~Ls----~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 222 IVASKASLRELALG----SNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHCTTCCEEECC----SSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHhCCCccEEecc----CCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 33445555555555 23455555544443 2455555555554
No 22
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.53 E-value=0.1 Score=39.26 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=29.3
Q ss_pred hHHHhhcCccceeeceeccCCCCcccHHHHHHHHH---hCCCCcEEeccCCCCCC
Q 040130 94 LPSVFSRFDSVTKLALRCDRKSISLDDDALVLISL---RCQKLTRLKLRGCREIT 145 (147)
Q Consensus 94 l~~l~~r~~~L~~L~L~c~~~c~~itD~~L~~la~---~cp~L~~L~L~~C~~vt 145 (147)
+...+.....|++|+|+ ...|+|++...||+ .-..|++|+|++. .++
T Consensus 62 la~aL~~N~~L~~L~L~----~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig 111 (197)
T 1pgv_A 62 LIEAACNSKHIEKFSLA----NTAISDSEARGLIELIETSPSLRVLNVESN-FLT 111 (197)
T ss_dssp HHHHHTTCSCCCEEECT----TSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCC
T ss_pred HHHHHhhCCCcCEEEcc----CCCCChHHHHHHHHHHhcCCccCeEecCCC-cCC
Confidence 44444556677777776 45677776666664 4556777777664 344
No 23
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=92.24 E-value=0.072 Score=38.52 Aligned_cols=42 Identities=29% Similarity=0.317 Sum_probs=26.6
Q ss_pred cCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCCCCCC
Q 040130 100 RFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITD 146 (147)
Q Consensus 100 r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C~~vtD 146 (147)
.+++|+.|+|+ ...+++.....+. .+++|++|+|++|..+++
T Consensus 110 ~l~~L~~L~Ls----~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~ 151 (197)
T 4ezg_A 110 GLTSLTLLDIS----HSAHDDSILTKIN-TLPKVNSIDLSYNGAITD 151 (197)
T ss_dssp TCTTCCEEECC----SSBCBGGGHHHHT-TCSSCCEEECCSCTBCCC
T ss_pred CCCCCCEEEec----CCccCcHhHHHHh-hCCCCCEEEccCCCCccc
Confidence 34556666665 4456665555554 478888888888764543
No 24
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=92.00 E-value=0.23 Score=39.43 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=6.1
Q ss_pred hCCCCcEEeccCC
Q 040130 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~cp~L~~L~L~~C 141 (147)
.+++|++|+|++|
T Consensus 242 ~~~~L~~L~L~~n 254 (386)
T 2ca6_A 242 SWPNLRELGLNDC 254 (386)
T ss_dssp GCTTCCEEECTTC
T ss_pred cCCCcCEEECCCC
Confidence 3444455555444
No 25
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=91.72 E-value=0.26 Score=39.12 Aligned_cols=41 Identities=15% Similarity=0.162 Sum_probs=22.0
Q ss_pred HhhcCccceeeceeccCCCCcccHHHHHHHHHh-----CCCCcEEeccCC
Q 040130 97 VFSRFDSVTKLALRCDRKSISLDDDALVLISLR-----CQKLTRLKLRGC 141 (147)
Q Consensus 97 l~~r~~~L~~L~L~c~~~c~~itD~~L~~la~~-----cp~L~~L~L~~C 141 (147)
.+..+++|++|+|+ ...+++.+...++.. +++|++|+|++|
T Consensus 239 ~l~~~~~L~~L~L~----~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n 284 (386)
T 2ca6_A 239 ALKSWPNLRELGLN----DCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 284 (386)
T ss_dssp HGGGCTTCCEEECT----TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred HHccCCCcCEEECC----CCCCchhhHHHHHHHHhhccCCCeEEEECcCC
Confidence 34445555566555 334555555554442 556666666655
No 26
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=89.48 E-value=0.21 Score=34.10 Aligned_cols=44 Identities=20% Similarity=0.278 Sum_probs=26.9
Q ss_pred hHHHhhcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 040130 94 LPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 94 l~~l~~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C 141 (147)
+......+++|+.|+|+ ...+++-........+++|++|+|++|
T Consensus 80 ~~~~~~~l~~L~~L~ls----~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 80 LEVLAEKCPNLTHLNLS----GNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp THHHHHHCTTCCEEECT----TSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred HHHHhhhCCCCCEEECC----CCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 55556667777777776 344555332233445777777777776
No 27
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.44 E-value=0.65 Score=34.75 Aligned_cols=60 Identities=17% Similarity=0.102 Sum_probs=45.0
Q ss_pred ceeeeccchhh---hhhchHHHhhcCccceeeceeccCCCCcccHHHHHHHHHhCC---CCcEEeccCCC
Q 040130 79 RYRLSLNAQSE---ILSSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQ---KLTRLKLRGCR 142 (147)
Q Consensus 79 ~~~l~l~~~~~---~~~~l~~l~~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp---~L~~L~L~~C~ 142 (147)
.+.+++....- ....+...+.....|++|+|+ ...|+|++...|++... .|++|+|+++.
T Consensus 72 L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~----~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 72 IEKFSLANTAISDSEARGLIELIETSPSLRVLNVE----SNFLTPELLARLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp CCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECC----SSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred cCEEEccCCCCChHHHHHHHHHHhcCCccCeEecC----CCcCCHHHHHHHHHHHhhCCceeEEECCCCc
Confidence 35677755421 124567777788999999998 78899999999998654 49999998764
No 28
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=89.03 E-value=0.17 Score=35.37 Aligned_cols=43 Identities=26% Similarity=0.307 Sum_probs=24.3
Q ss_pred hHHHhhcCccceeeceeccCCCCcccHH-HHHHHHHhCCCCcEEeccCC
Q 040130 94 LPSVFSRFDSVTKLALRCDRKSISLDDD-ALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 94 l~~l~~r~~~L~~L~L~c~~~c~~itD~-~L~~la~~cp~L~~L~L~~C 141 (147)
+..+...+++|+.|+|+ ...+++- .+.. ...+++|+.|+|++|
T Consensus 87 ~~~~~~~l~~L~~L~Ls----~N~l~~~~~~~~-l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 87 LDMLAEKLPNLTHLNLS----GNKLKDISTLEP-LKKLECLKSLDLFNC 130 (168)
T ss_dssp CCHHHHHCTTCCEEECB----SSSCCSSGGGGG-GSSCSCCCEEECCSS
T ss_pred HHHHHhhCCCCCEEecc----CCccCcchhHHH-HhcCCCCCEEEeeCC
Confidence 44555566777777776 3344442 1122 234677777777765
No 29
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=87.20 E-value=0.45 Score=37.55 Aligned_cols=59 Identities=20% Similarity=0.076 Sum_probs=33.2
Q ss_pred eeeeccchhhh---hhchHHHhhcC-ccceeeceeccCCCCcccHHHHH---HHHHhC-CCCcEEeccCCC
Q 040130 80 YRLSLNAQSEI---LSSLPSVFSRF-DSVTKLALRCDRKSISLDDDALV---LISLRC-QKLTRLKLRGCR 142 (147)
Q Consensus 80 ~~l~l~~~~~~---~~~l~~l~~r~-~~L~~L~L~c~~~c~~itD~~L~---~la~~c-p~L~~L~L~~C~ 142 (147)
+.++++...-- ...+..+.... ++|++|+|+ ...+++.+.. .....+ ++|++|+|++|.
T Consensus 54 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls----~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 54 TSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLS----GNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC----SSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred eEEECcCCCCCHHHHHHHHHHHhccCCCccEEECc----CCcCChHHHHHHHHHHHhCCCCccEEECcCCc
Confidence 55666544211 12233344444 888888887 3345554433 333445 788888888874
No 30
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=86.60 E-value=0.42 Score=38.61 Aligned_cols=42 Identities=14% Similarity=0.204 Sum_probs=28.8
Q ss_pred cCccceeeceeccCCCCcccHHHHHHHHH--hCCCCcEEeccCCCCCCC
Q 040130 100 RFDSVTKLALRCDRKSISLDDDALVLISL--RCQKLTRLKLRGCREITD 146 (147)
Q Consensus 100 r~~~L~~L~L~c~~~c~~itD~~L~~la~--~cp~L~~L~L~~C~~vtD 146 (147)
.|++|+.|+|+ ...++|.+...++. .+|+|++|+|+.+ .++|
T Consensus 250 ~~p~Lr~L~L~----~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d 293 (362)
T 2ra8_A 250 RFPNLKWLGIV----DAEEQNVVVEMFLESDILPQLETMDISAG-VLTD 293 (362)
T ss_dssp TCTTCCEEEEE----SCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBH
T ss_pred CCCCcCEEeCC----CCCCchHHHHHHHhCccCCCCCEEECCCC-CCCh
Confidence 46677777776 34577777777775 5788999998654 5554
No 31
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=85.95 E-value=0.4 Score=32.67 Aligned_cols=43 Identities=26% Similarity=0.522 Sum_probs=30.7
Q ss_pred HhhcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCCCCC
Q 040130 97 VFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREIT 145 (147)
Q Consensus 97 l~~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C~~vt 145 (147)
.+..+++|+.|+|+ ...+++. +..+...+++|++|+|++|. ++
T Consensus 59 ~~~~l~~L~~L~Ls----~n~i~~~-~~~~~~~l~~L~~L~ls~N~-i~ 101 (149)
T 2je0_A 59 NLPKLNKLKKLELS----DNRVSGG-LEVLAEKCPNLTHLNLSGNK-IK 101 (149)
T ss_dssp TCCCCTTCCEEECC----SSCCCSC-THHHHHHCTTCCEEECTTSC-CC
T ss_pred hhhcCCCCCEEECC----CCcccch-HHHHhhhCCCCCEEECCCCc-CC
Confidence 34567889999998 3445542 45566679999999999874 44
No 32
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=83.48 E-value=0.86 Score=35.89 Aligned_cols=17 Identities=12% Similarity=-0.115 Sum_probs=10.1
Q ss_pred CCCCCHHHHHHHHHhCC
Q 040130 41 TGDLPDDCLAYIFQFLG 57 (147)
Q Consensus 41 ~~~LP~elL~~If~~L~ 57 (147)
+...+.+.+...|+.++
T Consensus 34 l~~~~~~~l~~~l~~~~ 50 (362)
T 3goz_A 34 LYSISTVELIQAFANTP 50 (362)
T ss_dssp GGGSCHHHHHHHHHTCC
T ss_pred CChHHHHHHHHHHHhCC
Confidence 44566666666666443
No 33
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=81.18 E-value=0.78 Score=35.74 Aligned_cols=40 Identities=23% Similarity=0.279 Sum_probs=26.3
Q ss_pred HhhcCccceeeceeccCCCCcccH-HHHHHHHHhCCCCcEEeccC
Q 040130 97 VFSRFDSVTKLALRCDRKSISLDD-DALVLISLRCQKLTRLKLRG 140 (147)
Q Consensus 97 l~~r~~~L~~L~L~c~~~c~~itD-~~L~~la~~cp~L~~L~L~~ 140 (147)
+...+++|++|+|+ .+.|+. .++..+...+++|+.|+|++
T Consensus 165 ~~~~l~~L~~L~Ls----~N~l~~l~~l~~~~~~l~~L~~L~Ls~ 205 (267)
T 3rw6_A 165 IEENIPELLSLNLS----NNRLYRLDDMSSIVQKAPNLKILNLSG 205 (267)
T ss_dssp HHHHCTTCCEEECT----TSCCCCCGGGTTHHHHSTTCCEEECTT
T ss_pred HHhhCCCCCEEECC----CCCCCCCccchhHHhhCCCCCEEECCC
Confidence 33567888888887 444543 23444556788888888876
No 34
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=78.38 E-value=0.39 Score=33.38 Aligned_cols=43 Identities=12% Similarity=0.047 Sum_probs=27.9
Q ss_pred HhhcCccceeeceeccCCCCcccHHHH--HHHHHhCCCCcEEeccCCCC
Q 040130 97 VFSRFDSVTKLALRCDRKSISLDDDAL--VLISLRCQKLTRLKLRGCRE 143 (147)
Q Consensus 97 l~~r~~~L~~L~L~c~~~c~~itD~~L--~~la~~cp~L~~L~L~~C~~ 143 (147)
.+..+++|+.|+|+ ...+++..- ..+...+++|++|++++|..
T Consensus 115 ~l~~l~~L~~L~l~----~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 115 PLKKLECLKSLDLF----NCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp GGSSCSCCCEEECC----SSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred HHhcCCCCCEEEee----CCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 34567888888887 334443221 23455788899888888753
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=77.22 E-value=1.6 Score=33.61 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=24.1
Q ss_pred hhcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCC
Q 040130 98 FSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCR 142 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C~ 142 (147)
+..+++|++|+|+ ...+++.....+. .+++|++|+|++|.
T Consensus 283 ~~~l~~L~~L~L~----~n~l~~~~~~~l~-~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 283 LNNLSQLNSLFLN----NNQLGNEDMEVIG-GLTNLTTLFLSQNH 322 (347)
T ss_dssp GGGCTTCSEEECC----SSCCCGGGHHHHH-TCTTCSEEECCSSS
T ss_pred hcCCCCCCEEECc----CCcCCCcChhHhh-ccccCCEEEccCCc
Confidence 3445666666666 3345554444443 47888888888774
No 36
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=76.98 E-value=0.4 Score=34.47 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=24.6
Q ss_pred hhcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 040130 98 FSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C 141 (147)
+..+++|++|+|+ ...+++.....+. .+++|++|+|++|
T Consensus 84 l~~l~~L~~L~l~----~n~l~~~~~~~l~-~l~~L~~L~Ls~n 122 (197)
T 4ezg_A 84 ISGLSNLERLRIM----GKDVTSDKIPNLS-GLTSLTLLDISHS 122 (197)
T ss_dssp GTTCTTCCEEEEE----CTTCBGGGSCCCT-TCTTCCEEECCSS
T ss_pred hhcCCCCCEEEeE----CCccCcccChhhc-CCCCCCEEEecCC
Confidence 3456777777777 3445554444443 4788888888776
No 37
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=75.41 E-value=2.7 Score=32.16 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=22.9
Q ss_pred cCccceeeceeccCCCCccc--HHHHHHHHHhCCCCcEEeccCC
Q 040130 100 RFDSVTKLALRCDRKSISLD--DDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 100 r~~~L~~L~L~c~~~c~~it--D~~L~~la~~cp~L~~L~L~~C 141 (147)
.+++|++|+|+ ...++ ......+...+++|++|+|+++
T Consensus 195 ~l~~L~~L~Ls----~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 195 KFPAIQNLALR----NTGMETPTGVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp SSCCCCSCBCC----SSCCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred cCCCCCEEECC----CCCCCchHHHHHHHHhcCCCCCEEECCCC
Confidence 45566666666 33444 2333345567788888888776
No 38
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=71.01 E-value=5.1 Score=30.59 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=22.9
Q ss_pred hcCccceeeceeccCCCCccc--HHHHHHHHHhCCCCcEEeccCC
Q 040130 99 SRFDSVTKLALRCDRKSISLD--DDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 99 ~r~~~L~~L~L~c~~~c~~it--D~~L~~la~~cp~L~~L~L~~C 141 (147)
..+++|++|+|+ ...++ ......+...+++|++|+|+++
T Consensus 198 ~~l~~L~~L~L~----~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 198 LKFPTLQVLALR----NAGMETPSGVCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp TSCTTCCEEECT----TSCCCCHHHHHHHHHHTTCCCSEEECTTS
T ss_pred ccCCCCCEEECC----CCcCcchHHHHHHHHhcCCCCCEEECCCC
Confidence 445666666666 33444 2333445556777777777765
No 39
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=67.68 E-value=2 Score=33.00 Aligned_cols=12 Identities=25% Similarity=0.274 Sum_probs=5.8
Q ss_pred CCCCcEEeccCC
Q 040130 130 CQKLTRLKLRGC 141 (147)
Q Consensus 130 cp~L~~L~L~~C 141 (147)
+++|++|+|++|
T Consensus 79 l~~L~~L~Ls~n 90 (317)
T 3o53_A 79 LSTLRTLDLNNN 90 (317)
T ss_dssp CTTCCEEECCSS
T ss_pred cCCCCEEECcCC
Confidence 444555555443
No 40
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=65.70 E-value=1.4 Score=34.40 Aligned_cols=40 Identities=28% Similarity=0.445 Sum_probs=20.3
Q ss_pred hcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCCCC
Q 040130 99 SRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREI 144 (147)
Q Consensus 99 ~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C~~v 144 (147)
..+++|++|+|+ ...++ .+-.-...+++|++|+|++|..+
T Consensus 124 ~~l~~L~~L~Ls----~n~l~--~lp~~l~~l~~L~~L~L~~n~~~ 163 (328)
T 4fcg_A 124 QQFAGLETLTLA----RNPLR--ALPASIASLNRLRELSIRACPEL 163 (328)
T ss_dssp GGGTTCSEEEEE----SCCCC--CCCGGGGGCTTCCEEEEEEETTC
T ss_pred hccCCCCEEECC----CCccc--cCcHHHhcCcCCCEEECCCCCCc
Confidence 344556666665 22233 11112335677777777776443
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=63.82 E-value=2.5 Score=32.54 Aligned_cols=12 Identities=25% Similarity=0.249 Sum_probs=5.5
Q ss_pred CCCCcEEeccCC
Q 040130 130 CQKLTRLKLRGC 141 (147)
Q Consensus 130 cp~L~~L~L~~C 141 (147)
+++|++|++++|
T Consensus 131 l~~L~~L~l~~n 142 (347)
T 4fmz_A 131 LTKMYSLNLGAN 142 (347)
T ss_dssp CTTCCEEECTTC
T ss_pred CCceeEEECCCC
Confidence 444444444444
No 42
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=63.65 E-value=1.9 Score=32.95 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=10.8
Q ss_pred HhCCCCcEEeccCC
Q 040130 128 LRCQKLTRLKLRGC 141 (147)
Q Consensus 128 ~~cp~L~~L~L~~C 141 (147)
..+++|++|+|++|
T Consensus 194 ~~l~~L~~L~Ls~N 207 (310)
T 4glp_A 194 HKFPAIQNLALRNT 207 (310)
T ss_dssp TSSCCCCSCBCCSS
T ss_pred hcCCCCCEEECCCC
Confidence 46778888888877
No 43
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=61.57 E-value=2.2 Score=29.77 Aligned_cols=39 Identities=10% Similarity=0.206 Sum_probs=20.6
Q ss_pred hcCccceeeceeccCCCCcccH--HHHHHHHHhCCCCcEEeccCC
Q 040130 99 SRFDSVTKLALRCDRKSISLDD--DALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 99 ~r~~~L~~L~L~c~~~c~~itD--~~L~~la~~cp~L~~L~L~~C 141 (147)
..+++|+.|+|+ ...+++ ..-..+...+++|+.|+++++
T Consensus 110 ~~l~~L~~L~l~----~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 110 ASLKSLTYLCIL----RNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp GGCTTCCEEECC----SSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred hcCCCCCEEEec----CCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 455666666666 222322 111223455777777777665
No 44
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=61.46 E-value=2.9 Score=29.77 Aligned_cols=12 Identities=25% Similarity=0.421 Sum_probs=6.8
Q ss_pred HHHhCCCCcEEe
Q 040130 126 ISLRCQKLTRLK 137 (147)
Q Consensus 126 la~~cp~L~~L~ 137 (147)
+...+++|+.|+
T Consensus 169 ~~~~l~~L~~Ld 180 (198)
T 1ds9_A 169 VVKRLPNLKKLD 180 (198)
T ss_dssp HHHHCSSCSEEC
T ss_pred HHHhCCCcEEEC
Confidence 344566666665
No 45
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=61.40 E-value=1.4 Score=33.18 Aligned_cols=41 Identities=20% Similarity=0.270 Sum_probs=23.7
Q ss_pred HhhcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 040130 97 VFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 97 l~~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C 141 (147)
.+..+++|++|+|+ ++..+++-.... ...+++|++|+|++|
T Consensus 75 ~~~~l~~L~~L~l~---~n~~l~~~~~~~-~~~l~~L~~L~l~~n 115 (285)
T 1ozn_A 75 AFTGLALLEQLDLS---DNAQLRSVDPAT-FHGLGRLHTLHLDRC 115 (285)
T ss_dssp TTTTCTTCCEEECC---SCTTCCCCCTTT-TTTCTTCCEEECTTS
T ss_pred hcCCccCCCEEeCC---CCCCccccCHHH-hcCCcCCCEEECCCC
Confidence 34556778888887 332233211111 234788888888876
No 46
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=60.94 E-value=1.3 Score=34.18 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=19.3
Q ss_pred CccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 040130 101 FDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 101 ~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C 141 (147)
+++|+.|+|+ ...+++.....+...+++|++|+|++|
T Consensus 143 l~~L~~L~Ls----~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 143 RSRVQYLDLK----LNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp GSSEEEEECT----TSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred cCCCCEEECC----CCCCCcccHHHHhhccCcCCEEECCCC
Confidence 4556666665 233443333334445666666666665
No 47
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=59.03 E-value=6 Score=30.19 Aligned_cols=14 Identities=36% Similarity=0.501 Sum_probs=11.8
Q ss_pred HhCCCCcEEeccCC
Q 040130 128 LRCQKLTRLKLRGC 141 (147)
Q Consensus 128 ~~cp~L~~L~L~~C 141 (147)
..+++|++|+|++|
T Consensus 198 ~~l~~L~~L~L~~N 211 (312)
T 1wwl_A 198 LKFPTLQVLALRNA 211 (312)
T ss_dssp TSCTTCCEEECTTS
T ss_pred ccCCCCCEEECCCC
Confidence 56788999999887
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=58.42 E-value=3.4 Score=32.11 Aligned_cols=14 Identities=50% Similarity=0.892 Sum_probs=8.0
Q ss_pred hCCCCcEEeccCCC
Q 040130 129 RCQKLTRLKLRGCR 142 (147)
Q Consensus 129 ~cp~L~~L~L~~C~ 142 (147)
.+++|++|+|++|.
T Consensus 227 ~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 227 HLPKLEELDLRGCT 240 (328)
T ss_dssp GCTTCCEEECTTCT
T ss_pred cCCCCCEEECcCCc
Confidence 45556666665554
No 49
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=55.94 E-value=3.7 Score=30.85 Aligned_cols=13 Identities=23% Similarity=0.235 Sum_probs=6.9
Q ss_pred hCCCCcEEeccCC
Q 040130 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~cp~L~~L~L~~C 141 (147)
.+++|++|+|+++
T Consensus 83 ~l~~L~~L~L~~N 95 (263)
T 1xeu_A 83 DLTKLEELSVNRN 95 (263)
T ss_dssp TCSSCCEEECCSS
T ss_pred cCCCCCEEECCCC
Confidence 4555555555554
No 50
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=55.34 E-value=1.7 Score=32.49 Aligned_cols=39 Identities=13% Similarity=0.105 Sum_probs=19.3
Q ss_pred hcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 040130 99 SRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 99 ~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C 141 (147)
..+++|++|+|+ ...+++..+......+++|++|+|++|
T Consensus 121 ~~l~~L~~L~l~----~n~l~~~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 121 GHLKTLKELNVA----HNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp TTCTTCCEEECC----SSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred ccCCCCCEEECc----CCccceecCchhhccCCCCCEEECCCC
Confidence 344566666665 222332111122334667777777665
No 51
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=55.09 E-value=4.1 Score=31.29 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=22.3
Q ss_pred hhcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 040130 98 FSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C 141 (147)
+..+++|++|+|+ ...+++- .. ...+++|++|+|++|
T Consensus 81 ~~~l~~L~~L~L~----~n~l~~~--~~-~~~l~~L~~L~l~~n 117 (308)
T 1h6u_A 81 LKNLTKITELELS----GNPLKNV--SA-IAGLQSIKTLDLTST 117 (308)
T ss_dssp GTTCCSCCEEECC----SCCCSCC--GG-GTTCTTCCEEECTTS
T ss_pred HccCCCCCEEEcc----CCcCCCc--hh-hcCCCCCCEEECCCC
Confidence 4566777777776 2233331 12 335778888888776
No 52
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=54.94 E-value=10 Score=26.22 Aligned_cols=41 Identities=22% Similarity=0.088 Sum_probs=27.9
Q ss_pred HHhhcCccceeeceeccCCCCcccHH-HHHHHHHhCCCCcEEeccCC
Q 040130 96 SVFSRFDSVTKLALRCDRKSISLDDD-ALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 96 ~l~~r~~~L~~L~L~c~~~c~~itD~-~L~~la~~cp~L~~L~L~~C 141 (147)
.++..+++|+.|+|+ ...+++- .+.. ...+++|+.|+|+++
T Consensus 82 ~~~~~l~~L~~L~L~----~N~i~~~~~~~~-l~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 82 GLDQALPDLTELILT----NNSLVELGDLDP-LASLKSLTYLCILRN 123 (176)
T ss_dssp CHHHHCTTCCEEECC----SCCCCCGGGGGG-GGGCTTCCEEECCSS
T ss_pred chhhcCCCCCEEECC----CCcCCcchhhHh-hhcCCCCCEEEecCC
Confidence 345678899999998 3445431 1222 336899999999886
No 53
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=54.83 E-value=1.3 Score=36.44 Aligned_cols=12 Identities=17% Similarity=0.180 Sum_probs=6.4
Q ss_pred CCCCcEEeccCC
Q 040130 130 CQKLTRLKLRGC 141 (147)
Q Consensus 130 cp~L~~L~L~~C 141 (147)
+++|++|+|++|
T Consensus 493 l~~L~~L~l~~n 504 (570)
T 2z63_A 493 LSSLQVLNMASN 504 (570)
T ss_dssp CTTCCEEECCSS
T ss_pred ccCCCEEeCCCC
Confidence 455555555554
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=54.72 E-value=1.1 Score=34.53 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=6.7
Q ss_pred CCCCcEEeccCC
Q 040130 130 CQKLTRLKLRGC 141 (147)
Q Consensus 130 cp~L~~L~L~~C 141 (147)
+++|++|+|+++
T Consensus 148 l~~L~~L~L~~N 159 (313)
T 1ogq_A 148 LPNLVGITFDGN 159 (313)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCCCeEECcCC
Confidence 555555555554
No 55
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=52.77 E-value=13 Score=30.31 Aligned_cols=15 Identities=27% Similarity=0.293 Sum_probs=8.9
Q ss_pred HHhCCCCcEEeccCC
Q 040130 127 SLRCQKLTRLKLRGC 141 (147)
Q Consensus 127 a~~cp~L~~L~L~~C 141 (147)
...+++|++|+|++|
T Consensus 383 ~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 383 LLTLKNLTSLDISRN 397 (549)
T ss_dssp GGGCTTCCEEECTTC
T ss_pred hhcCCCCCEEECCCC
Confidence 345666666666665
No 56
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=52.71 E-value=5.5 Score=30.52 Aligned_cols=12 Identities=42% Similarity=0.340 Sum_probs=5.4
Q ss_pred CCCCcEEeccCC
Q 040130 130 CQKLTRLKLRGC 141 (147)
Q Consensus 130 cp~L~~L~L~~C 141 (147)
+++|++|+|+++
T Consensus 172 l~~L~~L~l~~n 183 (308)
T 1h6u_A 172 LSKLTTLKADDN 183 (308)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCCCEEECCCC
Confidence 444444444443
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=51.15 E-value=1.3 Score=33.66 Aligned_cols=13 Identities=15% Similarity=-0.069 Sum_probs=7.5
Q ss_pred hCCCCcEEeccCC
Q 040130 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~cp~L~~L~L~~C 141 (147)
.+++|++|+|+++
T Consensus 221 ~l~~L~~L~L~~N 233 (306)
T 2z66_A 221 CLNSLQVLDYSLN 233 (306)
T ss_dssp TCTTCCEEECTTS
T ss_pred CcccCCEeECCCC
Confidence 3556666666555
No 58
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=50.37 E-value=5.2 Score=30.46 Aligned_cols=13 Identities=31% Similarity=0.202 Sum_probs=6.2
Q ss_pred hCCCCcEEeccCC
Q 040130 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~cp~L~~L~L~~C 141 (147)
.+++|++|+|+++
T Consensus 176 ~l~~L~~L~L~~N 188 (291)
T 1h6t_A 176 GLTKLQNLYLSKN 188 (291)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCCccCEEECCCC
Confidence 3444555555443
No 59
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=50.12 E-value=1.3 Score=32.58 Aligned_cols=39 Identities=15% Similarity=0.039 Sum_probs=19.3
Q ss_pred hcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 040130 99 SRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 99 ~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C 141 (147)
..+++|++|+|+ +|..++.-.- .....+++|++|+|+++
T Consensus 77 ~~l~~L~~L~l~---~~n~l~~i~~-~~f~~l~~L~~L~l~~n 115 (239)
T 2xwt_C 77 YNLSKVTHIEIR---NTRNLTYIDP-DALKELPLLKFLGIFNT 115 (239)
T ss_dssp ESCTTCCEEEEE---EETTCCEECT-TSEECCTTCCEEEEEEE
T ss_pred CCCcCCcEEECC---CCCCeeEcCH-HHhCCCCCCCEEeCCCC
Confidence 455667777776 2233331100 01124667777777665
No 60
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=49.86 E-value=3.6 Score=33.58 Aligned_cols=38 Identities=21% Similarity=0.112 Sum_probs=22.5
Q ss_pred HhhcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCC
Q 040130 97 VFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCR 142 (147)
Q Consensus 97 l~~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C~ 142 (147)
.+..+++|++|+|+ ...+++ +... .+++|++|+|++|.
T Consensus 64 ~~~~l~~L~~L~Ls----~N~l~~--lp~~--~l~~L~~L~L~~N~ 101 (520)
T 2z7x_B 64 VFKFNQELEYLDLS----HNKLVK--ISCH--PTVNLKHLDLSFNA 101 (520)
T ss_dssp GGTTCTTCCEEECC----SSCCCE--EECC--CCCCCSEEECCSSC
T ss_pred HhhcccCCCEEecC----CCceee--cCcc--ccCCccEEeccCCc
Confidence 44566777777776 233331 1111 57788888887763
No 61
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=49.71 E-value=6.7 Score=31.73 Aligned_cols=13 Identities=31% Similarity=0.250 Sum_probs=5.5
Q ss_pred hCCCCcEEeccCC
Q 040130 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~cp~L~~L~L~~C 141 (147)
.+++|++|++++|
T Consensus 329 ~l~~L~~L~l~~n 341 (466)
T 1o6v_A 329 SLTKLQRLFFYNN 341 (466)
T ss_dssp GCTTCCEEECCSS
T ss_pred cCccCCEeECCCC
Confidence 3444444444443
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=49.50 E-value=1.5 Score=33.22 Aligned_cols=12 Identities=17% Similarity=0.141 Sum_probs=5.7
Q ss_pred CCCCcEEeccCC
Q 040130 130 CQKLTRLKLRGC 141 (147)
Q Consensus 130 cp~L~~L~L~~C 141 (147)
+++|++|+|+++
T Consensus 198 l~~L~~L~L~~N 209 (306)
T 2z66_A 198 LSSLQVLNMSHN 209 (306)
T ss_dssp CTTCCEEECTTS
T ss_pred CCCCCEEECCCC
Confidence 444555554443
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=48.52 E-value=6.4 Score=30.43 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=6.6
Q ss_pred hCCCCcEEeccCC
Q 040130 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~cp~L~~L~L~~C 141 (147)
.+++|++|+|++|
T Consensus 147 ~l~~L~~L~l~~n 159 (353)
T 2z80_A 147 HLTKLQILRVGNM 159 (353)
T ss_dssp TCTTCCEEEEEES
T ss_pred cCCCCcEEECCCC
Confidence 3455555555554
No 64
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=48.21 E-value=3.2 Score=29.64 Aligned_cols=40 Identities=25% Similarity=0.255 Sum_probs=24.0
Q ss_pred HhhcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 040130 97 VFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 97 l~~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C 141 (147)
.+..+++|++|+|+ ...++.-. ......+++|++|+|+++
T Consensus 71 ~~~~l~~L~~L~Ls----~n~l~~~~-~~~~~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 71 VFNKLTSLTYLNLS----TNQLQSLP-NGVFDKLTQLKELALNTN 110 (208)
T ss_dssp TTTTCTTCCEEECC----SSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred hcCCCCCcCEEECC----CCcCCccC-HhHhcCccCCCEEEcCCC
Confidence 34566788888887 23333111 111245788888888876
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=48.15 E-value=3 Score=34.48 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=18.5
Q ss_pred cCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 040130 100 RFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 100 r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C 141 (147)
.+++|+.|+|+ ...++......+...+++|+.|+|++|
T Consensus 142 ~l~~L~~L~Ls----~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 142 CRSRVQYLDLK----LNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp GGSSEEEEECT----TSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred CCCCCCEEECC----CCCCCCcChHHHhhhCCcccEEecCCC
Confidence 34556666665 233333223333334556666666554
No 66
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=47.73 E-value=5.7 Score=29.67 Aligned_cols=38 Identities=18% Similarity=0.090 Sum_probs=19.3
Q ss_pred hcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 040130 99 SRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 99 ~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C 141 (147)
..+++|++|+|+ ...++.-. ......+++|++|+|++|
T Consensus 82 ~~l~~L~~L~L~----~n~l~~~~-~~~~~~l~~L~~L~L~~n 119 (272)
T 3rfs_A 82 KELTNLTYLILT----GNQLQSLP-NGVFDKLTNLKELVLVEN 119 (272)
T ss_dssp TTCTTCCEEECT----TSCCCCCC-TTTTTTCTTCCEEECTTS
T ss_pred cCCCCCCEEECC----CCccCccC-hhHhcCCcCCCEEECCCC
Confidence 455666666666 22233111 011234677777777765
No 67
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=47.42 E-value=27 Score=26.78 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=17.7
Q ss_pred cccHHHHHHH---HHhCCCCcEEeccCC
Q 040130 117 SLDDDALVLI---SLRCQKLTRLKLRGC 141 (147)
Q Consensus 117 ~itD~~L~~l---a~~cp~L~~L~L~~C 141 (147)
.+++..+..+ ...+++|++|+|+++
T Consensus 260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N 287 (353)
T 2z80_A 260 KITDESLFQVMKLLNQISGLLELEFSRN 287 (353)
T ss_dssp BCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred cccCcchhhhHHHHhcccCCCEEECCCC
Confidence 3556555554 357889999999887
No 68
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=47.24 E-value=7.2 Score=31.00 Aligned_cols=14 Identities=21% Similarity=0.206 Sum_probs=8.0
Q ss_pred HhCCCCcEEeccCC
Q 040130 128 LRCQKLTRLKLRGC 141 (147)
Q Consensus 128 ~~cp~L~~L~L~~C 141 (147)
..+++|++|+|+++
T Consensus 151 ~~l~~L~~L~L~~n 164 (455)
T 3v47_A 151 LNMRRFHVLDLTFN 164 (455)
T ss_dssp GGCTTCCEEECTTC
T ss_pred CCCCcccEEeCCCC
Confidence 34566666666554
No 69
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=47.11 E-value=6.4 Score=29.95 Aligned_cols=37 Identities=22% Similarity=0.206 Sum_probs=23.7
Q ss_pred hhcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 040130 98 FSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C 141 (147)
+..+++|+.|+|+ ...+++ +.. ...+++|++|+|++|
T Consensus 86 l~~l~~L~~L~l~----~n~l~~--~~~-l~~l~~L~~L~L~~n 122 (291)
T 1h6t_A 86 LANLKNLGWLFLD----ENKVKD--LSS-LKDLKKLKSLSLEHN 122 (291)
T ss_dssp GTTCTTCCEEECC----SSCCCC--GGG-GTTCTTCCEEECTTS
T ss_pred cccCCCCCEEECC----CCcCCC--Chh-hccCCCCCEEECCCC
Confidence 5566777777777 333443 222 345788888888876
No 70
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=46.92 E-value=18 Score=29.41 Aligned_cols=40 Identities=18% Similarity=0.049 Sum_probs=23.0
Q ss_pred hhcCccceeeceeccCCCCcccHHHHHHH--HHhCCCCcEEeccCC
Q 040130 98 FSRFDSVTKLALRCDRKSISLDDDALVLI--SLRCQKLTRLKLRGC 141 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~~~c~~itD~~L~~l--a~~cp~L~~L~L~~C 141 (147)
...+++|++|+|+ ...+++...... ...+++|++|+|++|
T Consensus 330 ~~~l~~L~~L~Ls----~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N 371 (549)
T 2z81_A 330 SQHLKSLEFLDLS----ENLMVEEYLKNSACKGAWPSLQTLVLSQN 371 (549)
T ss_dssp HHHCTTCCEEECC----SSCCCHHHHHHHTCTTSSTTCCEEECTTS
T ss_pred HhcCccccEEEcc----CCccccccccchhhhhccccCcEEEccCC
Confidence 3456777777776 344555443322 234667777777765
No 71
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=46.66 E-value=19 Score=29.18 Aligned_cols=39 Identities=13% Similarity=0.273 Sum_probs=21.2
Q ss_pred hcCccceeeceeccCCCCcccH-HHHHHHHHhCCCCcEEeccCC
Q 040130 99 SRFDSVTKLALRCDRKSISLDD-DALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 99 ~r~~~L~~L~L~c~~~c~~itD-~~L~~la~~cp~L~~L~L~~C 141 (147)
..+++|++|+|+ ...+++ ..+......+++|++|+|++|
T Consensus 345 ~~l~~L~~L~L~----~N~l~~l~~~~~~~~~l~~L~~L~Ls~N 384 (520)
T 2z7x_B 345 GHLTELETLILQ----MNQLKELSKIAEMTTQMKSLQQLDISQN 384 (520)
T ss_dssp CCCSSCCEEECC----SSCCCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred ccCCCCCEEEcc----CCccCccccchHHHhhCCCCCEEECCCC
Confidence 445666666666 333443 223333345677777777665
No 72
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=45.91 E-value=3.4 Score=32.97 Aligned_cols=58 Identities=22% Similarity=0.217 Sum_probs=34.4
Q ss_pred eeeeccchhhhhhchHHHhhcCccceeeceeccCCCCcccHHHHHH-HHHhCCCCcEEeccCCC
Q 040130 80 YRLSLNAQSEILSSLPSVFSRFDSVTKLALRCDRKSISLDDDALVL-ISLRCQKLTRLKLRGCR 142 (147)
Q Consensus 80 ~~l~l~~~~~~~~~l~~l~~r~~~L~~L~L~c~~~c~~itD~~L~~-la~~cp~L~~L~L~~C~ 142 (147)
+.++++... +.......+..+++|++|+|+ ...+++..+.. ....+++|++|+|+++.
T Consensus 82 ~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~----~n~l~~~~~~~~~~~~l~~L~~L~L~~n~ 140 (455)
T 3v47_A 82 IILKLDYNQ-FLQLETGAFNGLANLEVLTLT----QCNLDGAVLSGNFFKPLTSLEMLVLRDNN 140 (455)
T ss_dssp CEEECTTCT-TCEECTTTTTTCTTCCEEECT----TSCCBTHHHHSSTTTTCTTCCEEECCSSB
T ss_pred CEEeCCCCc-cCccChhhccCcccCCEEeCC----CCCCCccccCcccccCcccCCEEECCCCc
Confidence 445554432 122223345667889999998 34566544332 23458889999998873
No 73
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=45.26 E-value=6.6 Score=29.43 Aligned_cols=36 Identities=25% Similarity=0.258 Sum_probs=18.7
Q ss_pred hcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 040130 99 SRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 99 ~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C 141 (147)
..+++|+.|+|+ ...+++- . -...+++|++|+|+++
T Consensus 125 ~~l~~L~~L~Ls----~N~i~~~--~-~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 125 IHLKNLEILSIR----NNKLKSI--V-MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp TTCTTCCEEECT----TSCCCBC--G-GGGGCTTCCEEECTTS
T ss_pred cCcccccEEECC----CCcCCCC--h-HHccCCCCCEEECCCC
Confidence 445666666665 2333332 1 1234666666666664
No 74
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=45.04 E-value=7.5 Score=32.84 Aligned_cols=42 Identities=21% Similarity=0.261 Sum_probs=24.2
Q ss_pred HHHhhcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 040130 95 PSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 95 ~~l~~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C 141 (147)
...+..+++|+.|+|+ + ..++.-.-. ....|++|++|+|++|
T Consensus 66 ~~~~~~l~~L~~L~L~---~-n~l~~l~~~-~~~~l~~L~~L~L~~n 107 (680)
T 1ziw_A 66 PELCQKLPMLKVLNLQ---H-NELSQLSDK-TFAFCTNLTELHLMSN 107 (680)
T ss_dssp TTHHHHCTTCCEEECC---S-SCCCCCCTT-TTTTCTTCSEEECCSS
T ss_pred HHHHhcccCcCEEECC---C-CccCccChh-hhccCCCCCEEECCCC
Confidence 3445667788888887 2 233311100 1235788888888876
No 75
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=44.84 E-value=7.7 Score=28.92 Aligned_cols=14 Identities=21% Similarity=0.216 Sum_probs=8.8
Q ss_pred HhCCCCcEEeccCC
Q 040130 128 LRCQKLTRLKLRGC 141 (147)
Q Consensus 128 ~~cp~L~~L~L~~C 141 (147)
..+++|++|+|+++
T Consensus 222 ~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 222 APLRALQYLRLNDN 235 (285)
T ss_dssp TTCTTCCEEECCSS
T ss_pred ccCcccCEEeccCC
Confidence 34666777776654
No 76
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=44.59 E-value=6.8 Score=33.59 Aligned_cols=11 Identities=36% Similarity=0.323 Sum_probs=4.7
Q ss_pred CCCCcEEeccC
Q 040130 130 CQKLTRLKLRG 140 (147)
Q Consensus 130 cp~L~~L~L~~ 140 (147)
+++|++|+|++
T Consensus 174 l~~L~~L~Ls~ 184 (605)
T 1m9s_A 174 LTKLQNLYLSK 184 (605)
T ss_dssp CTTCCEEECCS
T ss_pred CCCCCEEECcC
Confidence 44444444444
No 77
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=44.35 E-value=3.3 Score=32.56 Aligned_cols=13 Identities=31% Similarity=0.166 Sum_probs=8.7
Q ss_pred hCCCCcEEeccCC
Q 040130 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~cp~L~~L~L~~C 141 (147)
.+++|++|+|++|
T Consensus 115 ~l~~L~~L~L~~n 127 (390)
T 3o6n_A 115 NVPLLTVLVLERN 127 (390)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC
Confidence 4666777777665
No 78
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=43.95 E-value=2.2 Score=35.03 Aligned_cols=14 Identities=36% Similarity=0.524 Sum_probs=8.7
Q ss_pred HhCCCCcEEeccCC
Q 040130 128 LRCQKLTRLKLRGC 141 (147)
Q Consensus 128 ~~cp~L~~L~L~~C 141 (147)
..+++|++|+|++|
T Consensus 467 ~~l~~L~~L~l~~n 480 (570)
T 2z63_A 467 TELRNLTFLDLSQC 480 (570)
T ss_dssp TTCTTCCEEECTTS
T ss_pred hcccCCCEEECCCC
Confidence 34666666666665
No 79
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=43.87 E-value=2.5 Score=32.74 Aligned_cols=12 Identities=17% Similarity=0.196 Sum_probs=5.9
Q ss_pred hcCccceeecee
Q 040130 99 SRFDSVTKLALR 110 (147)
Q Consensus 99 ~r~~~L~~L~L~ 110 (147)
..+++|+.|+|+
T Consensus 77 ~~l~~L~~L~l~ 88 (347)
T 2ifg_A 77 HFTPRLSRLNLS 88 (347)
T ss_dssp GSCSCCCEEECC
T ss_pred cCCcCCCEEeCC
Confidence 344455555554
No 80
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=43.63 E-value=5.6 Score=29.06 Aligned_cols=14 Identities=36% Similarity=0.301 Sum_probs=6.9
Q ss_pred HhCCCCcEEeccCC
Q 040130 128 LRCQKLTRLKLRGC 141 (147)
Q Consensus 128 ~~cp~L~~L~L~~C 141 (147)
..+++|+.|+|+++
T Consensus 132 ~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 132 ERLTHLTHLALDQN 145 (229)
T ss_dssp GGCTTCSEEECCSS
T ss_pred ccCCCCCEEECCCC
Confidence 34455555555543
No 81
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=43.54 E-value=7.4 Score=33.35 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=19.8
Q ss_pred hcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 040130 99 SRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 99 ~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C 141 (147)
..+++|+.|+|+ ...+++- .....+++|+.|+|++|
T Consensus 128 ~~l~~L~~L~Ls----~N~l~~l---~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 128 VHLPQLESLYLG----NNKITDI---TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp GGCTTCSEEECC----SSCCCCC---GGGGSCTTCSEEECCSS
T ss_pred cCCCccCEEECC----CCccCCc---hhhcccCCCCEEECcCC
Confidence 345566666665 2234332 12335777777777776
No 82
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=41.52 E-value=4.2 Score=31.13 Aligned_cols=12 Identities=25% Similarity=0.504 Sum_probs=6.2
Q ss_pred hcCccceeecee
Q 040130 99 SRFDSVTKLALR 110 (147)
Q Consensus 99 ~r~~~L~~L~L~ 110 (147)
..+++|++|+|+
T Consensus 213 ~~l~~L~~L~Ls 224 (330)
T 1xku_A 213 KGLNNLAKLGLS 224 (330)
T ss_dssp TTCTTCCEEECC
T ss_pred cCCCCCCEEECC
Confidence 344555555555
No 83
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=41.33 E-value=4.6 Score=28.71 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=22.8
Q ss_pred HhhcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 040130 97 VFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 97 l~~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C 141 (147)
.+..+++|++|+|+ ...++.-.-. ....+++|++|+|+++
T Consensus 73 ~~~~l~~L~~L~Ls----~N~l~~~~~~-~~~~l~~L~~L~L~~N 112 (192)
T 1w8a_A 73 AFEGASHIQELQLG----ENKIKEISNK-MFLGLHQLKTLNLYDN 112 (192)
T ss_dssp TTTTCTTCCEEECC----SCCCCEECSS-SSTTCTTCCEEECCSS
T ss_pred HcCCcccCCEEECC----CCcCCccCHH-HhcCCCCCCEEECCCC
Confidence 34556778888887 2333321111 1134688888888875
No 84
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=41.05 E-value=9.4 Score=33.18 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=20.8
Q ss_pred hcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCC
Q 040130 99 SRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCR 142 (147)
Q Consensus 99 ~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C~ 142 (147)
..+++|++|+|+ ...+++.....+ ..+++|++|+|++|.
T Consensus 220 ~~l~~L~~L~Ls----~n~l~~~~~~~l-~~l~~L~~L~Ls~n~ 258 (768)
T 3rgz_A 220 GDCSALQHLDIS----GNKLSGDFSRAI-STCTELKLLNISSNQ 258 (768)
T ss_dssp TTCCSCCEEECC----SSCCCSCHHHHT-TTCSSCCEEECCSSC
T ss_pred ccCCCCCEEECc----CCcCCCcccHHH-hcCCCCCEEECCCCc
Confidence 344556666665 233443222222 347777777777763
No 85
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=41.04 E-value=3.9 Score=31.41 Aligned_cols=12 Identities=17% Similarity=0.207 Sum_probs=6.0
Q ss_pred hcCccceeecee
Q 040130 99 SRFDSVTKLALR 110 (147)
Q Consensus 99 ~r~~~L~~L~L~ 110 (147)
..+++|++|+|+
T Consensus 75 ~~l~~L~~L~L~ 86 (332)
T 2ft3_A 75 KGLQHLYALVLV 86 (332)
T ss_dssp TTCTTCCEEECC
T ss_pred hCCCCCcEEECC
Confidence 344555555554
No 86
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=41.01 E-value=4.2 Score=32.67 Aligned_cols=13 Identities=38% Similarity=0.319 Sum_probs=7.6
Q ss_pred hCCCCcEEeccCC
Q 040130 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~cp~L~~L~L~~C 141 (147)
.+++|++|+|+++
T Consensus 134 ~l~~L~~L~L~~N 146 (440)
T 3zyj_A 134 YLSKLKELWLRNN 146 (440)
T ss_dssp SCSSCCEEECCSC
T ss_pred ccccCceeeCCCC
Confidence 3556666666554
No 87
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=40.80 E-value=4.7 Score=28.83 Aligned_cols=40 Identities=23% Similarity=0.106 Sum_probs=23.6
Q ss_pred HhhcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 040130 97 VFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 97 l~~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C 141 (147)
.+..+++|++|+|+ ...++.-.-. ....+++|+.|+|+++
T Consensus 73 ~f~~l~~L~~L~Ls----~N~l~~i~~~-~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 73 SFSNMTQLLTLILS----YNRLRCIPPR-TFDGLKSLRLLSLHGN 112 (193)
T ss_dssp TTTTCTTCCEEECC----SSCCCBCCTT-TTTTCTTCCEEECCSS
T ss_pred HccCCCCCCEEECC----CCccCEeCHH-HhCCCCCCCEEECCCC
Confidence 34566788888887 2333221111 1235788999998875
No 88
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=40.45 E-value=4.9 Score=28.05 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=20.5
Q ss_pred hhcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccC
Q 040130 98 FSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRG 140 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~ 140 (147)
+..+++|+.|+|+ ...++.-. ......+++|+.|+|++
T Consensus 74 f~~l~~L~~L~L~----~N~l~~~~-~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 74 FDKLTQLTQLSLN----DNQLKSIP-RGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp TTTCTTCCEEECC----SSCCCCCC-TTTTTTCTTCCEEECCS
T ss_pred ccCCCCCCEEECC----CCccCEeC-HHHhcCCCCCCEEEeCC
Confidence 4556777777776 22332100 01123467778887766
No 89
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=40.29 E-value=3.7 Score=33.14 Aligned_cols=41 Identities=24% Similarity=0.256 Sum_probs=24.2
Q ss_pred HhhcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCC
Q 040130 97 VFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCR 142 (147)
Q Consensus 97 l~~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C~ 142 (147)
.+..+++|++|+|+ ...++.-.. .....+++|++|+|+++.
T Consensus 75 ~~~~l~~L~~L~L~----~n~l~~~~~-~~~~~l~~L~~L~Ls~n~ 115 (477)
T 2id5_A 75 AFNNLFNLRTLGLR----SNRLKLIPL-GVFTGLSNLTKLDISENK 115 (477)
T ss_dssp TTTTCTTCCEEECC----SSCCCSCCT-TSSTTCTTCCEEECTTSC
T ss_pred hhhCCccCCEEECC----CCcCCccCc-ccccCCCCCCEEECCCCc
Confidence 34566788888887 223332111 112357888888888763
No 90
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=40.17 E-value=4.5 Score=35.22 Aligned_cols=13 Identities=31% Similarity=0.677 Sum_probs=5.9
Q ss_pred hCCCCcEEeccCC
Q 040130 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~cp~L~~L~L~~C 141 (147)
.|++|++|+|++|
T Consensus 176 ~l~~L~~L~Ls~n 188 (768)
T 3rgz_A 176 GCGELKHLAISGN 188 (768)
T ss_dssp CCTTCCEEECCSS
T ss_pred cCCCCCEEECCCC
Confidence 3444444444443
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=39.59 E-value=4.2 Score=30.01 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=22.3
Q ss_pred hhcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 040130 98 FSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C 141 (147)
+..+++|+.|+|+ ...++.-.. .....+++|++|+|+++
T Consensus 79 ~~~l~~L~~L~L~----~n~l~~~~~-~~~~~l~~L~~L~L~~N 117 (251)
T 3m19_A 79 FDDLTELGTLGLA----NNQLASLPL-GVFDHLTQLDKLYLGGN 117 (251)
T ss_dssp TTTCTTCCEEECT----TSCCCCCCT-TTTTTCTTCCEEECCSS
T ss_pred hccCCcCCEEECC----CCcccccCh-hHhcccCCCCEEEcCCC
Confidence 4556777777776 233331111 11245788888888876
No 92
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=39.36 E-value=9.7 Score=30.74 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=23.5
Q ss_pred hhcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 040130 98 FSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C 141 (147)
+..+.+|++|+|+ + ..+++.. . ...+++|++|+|++|
T Consensus 86 ~~~l~~L~~L~l~---~-n~l~~~~--~-~~~l~~L~~L~L~~n 122 (466)
T 1o6v_A 86 LKNLTKLVDILMN---N-NQIADIT--P-LANLTNLTGLTLFNN 122 (466)
T ss_dssp GTTCTTCCEEECC---S-SCCCCCG--G-GTTCTTCCEEECCSS
T ss_pred hhccccCCEEECC---C-CccccCh--h-hcCCCCCCEEECCCC
Confidence 5566778888877 2 2333221 1 346888888888887
No 93
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=39.32 E-value=4 Score=33.67 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=22.7
Q ss_pred HhhcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 040130 97 VFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 97 l~~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C 141 (147)
.+..+++|++|+|+ ...++.-.. .....+++|++|+|++|
T Consensus 95 ~f~~L~~L~~L~Ls----~N~l~~l~~-~~f~~L~~L~~L~Ls~N 134 (635)
T 4g8a_A 95 AYQSLSHLSTLILT----GNPIQSLAL-GAFSGLSSLQKLVAVET 134 (635)
T ss_dssp TTTTCTTCCEEECT----TCCCCEECG-GGGTTCTTCCEEECTTS
T ss_pred HhcCCCCCCEEEcc----CCcCCCCCH-HHhcCCCCCCEEECCCC
Confidence 34556777777777 223322110 11245788888888876
No 94
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=39.09 E-value=5.3 Score=29.08 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=21.9
Q ss_pred HhhcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 040130 97 VFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 97 l~~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C 141 (147)
.+..+++|++|+|+ ...++.-.-.. ...+++|+.|+|+++
T Consensus 100 ~~~~l~~L~~L~Ls----~N~l~~~~~~~-~~~l~~L~~L~L~~N 139 (220)
T 2v70_A 100 MFKGLESLKTLMLR----SNRITCVGNDS-FIGLSSVRLLSLYDN 139 (220)
T ss_dssp GGTTCSSCCEEECT----TSCCCCBCTTS-STTCTTCSEEECTTS
T ss_pred HhcCCcCCCEEECC----CCcCCeECHhH-cCCCccCCEEECCCC
Confidence 34556777777776 22332110011 125678888888775
No 95
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=39.03 E-value=3 Score=34.74 Aligned_cols=12 Identities=17% Similarity=0.235 Sum_probs=5.5
Q ss_pred CCCCcEEeccCC
Q 040130 130 CQKLTRLKLRGC 141 (147)
Q Consensus 130 cp~L~~L~L~~C 141 (147)
+++|++|+|++|
T Consensus 496 l~~L~~L~Ls~N 507 (606)
T 3vq2_A 496 LHRLQLLNMSHN 507 (606)
T ss_dssp CTTCCEEECCSS
T ss_pred cccCCEEECCCC
Confidence 444444444444
No 96
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=38.78 E-value=5.4 Score=27.63 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=24.4
Q ss_pred HhhcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 040130 97 VFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 97 l~~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C 141 (147)
.+..+++|++|+|+ ...++.-. ......+++|++|+|+++
T Consensus 71 ~~~~l~~L~~L~l~----~N~l~~~~-~~~~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 71 VFDKLTKLTILYLH----ENKLQSLP-NGVFDKLTQLKELALDTN 110 (177)
T ss_dssp TTTTCTTCCEEECC----SSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred HccCCCccCEEECC----CCCccccC-HHHhhCCcccCEEECcCC
Confidence 34567788888887 33343111 112245788999998876
No 97
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=37.70 E-value=7.8 Score=29.59 Aligned_cols=39 Identities=10% Similarity=-0.016 Sum_probs=26.4
Q ss_pred HhhcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 040130 97 VFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 97 l~~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C 141 (147)
.+..+++|++|+|+ ...++ .+..-...+++|++|+|+++
T Consensus 235 ~~~~l~~L~~L~L~----~N~l~--~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 235 SLANTPHLRELHLN----NNKLV--KVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp TGGGSTTCCEEECC----SSCCS--SCCTTTTTCSSCCEEECCSS
T ss_pred hccCCCCCCEEECC----CCcCc--cCChhhccCCCcCEEECCCC
Confidence 34567899999998 33444 11111346899999999987
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=37.57 E-value=6 Score=28.79 Aligned_cols=39 Identities=18% Similarity=0.080 Sum_probs=21.3
Q ss_pred hhcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 040130 98 FSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C 141 (147)
+..+++|+.|+|+ ...++.-.-. ....+++|+.|+|+++
T Consensus 100 f~~l~~L~~L~L~----~N~l~~~~~~-~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 100 FEGLFSLQLLLLN----ANKINCLRVD-AFQDLHNLNLLSLYDN 138 (220)
T ss_dssp TTTCTTCCEEECC----SSCCCCCCTT-TTTTCTTCCEEECCSS
T ss_pred ccCCCCCCEEECC----CCCCCEeCHH-HcCCCCCCCEEECCCC
Confidence 3455677777776 2233221111 1224678888888775
No 99
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=37.56 E-value=5.9 Score=30.66 Aligned_cols=16 Identities=19% Similarity=0.291 Sum_probs=10.2
Q ss_pred HHHhhcCccceeecee
Q 040130 95 PSVFSRFDSVTKLALR 110 (147)
Q Consensus 95 ~~l~~r~~~L~~L~L~ 110 (147)
..++..+++|+.|+|+
T Consensus 189 ~~~~~~l~~L~~L~Ls 204 (267)
T 3rw6_A 189 SSIVQKAPNLKILNLS 204 (267)
T ss_dssp TTHHHHSTTCCEEECT
T ss_pred hhHHhhCCCCCEEECC
Confidence 3445566777777776
No 100
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=37.44 E-value=4.9 Score=32.38 Aligned_cols=12 Identities=33% Similarity=0.412 Sum_probs=5.6
Q ss_pred CCCCcEEeccCC
Q 040130 130 CQKLTRLKLRGC 141 (147)
Q Consensus 130 cp~L~~L~L~~C 141 (147)
+++|++|+|++|
T Consensus 195 l~~L~~L~L~~n 206 (452)
T 3zyi_A 195 LFNLKYLNLGMC 206 (452)
T ss_dssp CTTCCEEECTTS
T ss_pred CCCCCEEECCCC
Confidence 444444444443
No 101
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=36.85 E-value=5.6 Score=30.51 Aligned_cols=10 Identities=10% Similarity=0.165 Sum_probs=6.2
Q ss_pred CCcEEeccCC
Q 040130 132 KLTRLKLRGC 141 (147)
Q Consensus 132 ~L~~L~L~~C 141 (147)
+|++|+|+++
T Consensus 175 ~L~~L~L~~N 184 (313)
T 1ogq_A 175 LFTSMTISRN 184 (313)
T ss_dssp TCCEEECCSS
T ss_pred cCcEEECcCC
Confidence 6666666654
No 102
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=36.84 E-value=4.8 Score=32.44 Aligned_cols=13 Identities=38% Similarity=0.312 Sum_probs=7.5
Q ss_pred hCCCCcEEeccCC
Q 040130 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~cp~L~~L~L~~C 141 (147)
.+++|++|+|+++
T Consensus 145 ~l~~L~~L~L~~N 157 (452)
T 3zyi_A 145 YLSKLRELWLRNN 157 (452)
T ss_dssp SCTTCCEEECCSC
T ss_pred ccCCCCEEECCCC
Confidence 3556666666554
No 103
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=36.57 E-value=2.4 Score=37.43 Aligned_cols=41 Identities=27% Similarity=0.213 Sum_probs=22.1
Q ss_pred hhcCccceeeceeccCCCCcccHHHHHH-HHHhCCCCcEEeccCCC
Q 040130 98 FSRFDSVTKLALRCDRKSISLDDDALVL-ISLRCQKLTRLKLRGCR 142 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~~~c~~itD~~L~~-la~~cp~L~~L~L~~C~ 142 (147)
+..+.+|++|+|+ ...+++..+.. ....+++|++|+|+++.
T Consensus 93 ~~~l~~L~~L~Ls----~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~ 134 (844)
T 3j0a_A 93 FQGLFHLFELRLY----FCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134 (844)
T ss_dssp SCSCSSCCCEECT----TCCCSSCCSTTCCCSSCSSCCEEEEESCC
T ss_pred ccCCcccCEeeCc----CCCCCcccccCccccccCCCCEEECCCCc
Confidence 4455666777766 22343321111 12357788888887763
No 104
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=36.56 E-value=5.2 Score=32.13 Aligned_cols=12 Identities=33% Similarity=0.492 Sum_probs=6.6
Q ss_pred CCCCcEEeccCC
Q 040130 130 CQKLTRLKLRGC 141 (147)
Q Consensus 130 cp~L~~L~L~~C 141 (147)
+++|++|+|++|
T Consensus 184 l~~L~~L~L~~n 195 (440)
T 3zyj_A 184 LSNLRYLNLAMC 195 (440)
T ss_dssp CSSCCEEECTTS
T ss_pred ccccCeecCCCC
Confidence 455555555554
No 105
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=36.49 E-value=4.8 Score=33.21 Aligned_cols=38 Identities=21% Similarity=0.136 Sum_probs=21.8
Q ss_pred HhhcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 040130 97 VFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 97 l~~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C 141 (147)
.+..+++|+.|+|+ ...+++.. . ...+++|+.|+|++|
T Consensus 53 ~~~~l~~L~~L~Ls----~N~l~~~~--~-l~~l~~L~~L~Ls~N 90 (487)
T 3oja_A 53 DLAPFTKLELLNLS----SNVLYETL--D-LESLSTLRTLDLNNN 90 (487)
T ss_dssp GGTTCTTCCEEECT----TSCCEEEE--E-CTTCTTCCEEECCSS
T ss_pred HHhCCCCCCEEEee----CCCCCCCc--c-cccCCCCCEEEecCC
Confidence 34566777777776 22232110 0 345777788877776
No 106
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=35.72 E-value=4.6 Score=33.59 Aligned_cols=40 Identities=18% Similarity=0.007 Sum_probs=22.4
Q ss_pred HhhcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 040130 97 VFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 97 l~~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C 141 (147)
.+..+++|++|+|+ ...++...-.. ...+++|++|+|++|
T Consensus 76 ~~~~l~~L~~L~Ls----~n~l~~~~~~~-~~~l~~L~~L~L~~n 115 (606)
T 3t6q_A 76 TFQSQHRLDTLVLT----ANPLIFMAETA-LSGPKALKHLFFIQT 115 (606)
T ss_dssp TTTTCTTCCEEECT----TCCCSEECTTT-TSSCTTCCEEECTTS
T ss_pred hccCccccCeeeCC----CCcccccChhh-hcccccccEeecccc
Confidence 34566777777776 22232111111 235778888888776
No 107
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=35.64 E-value=9.5 Score=29.17 Aligned_cols=14 Identities=14% Similarity=-0.028 Sum_probs=8.6
Q ss_pred HhCCCCcEEeccCC
Q 040130 128 LRCQKLTRLKLRGC 141 (147)
Q Consensus 128 ~~cp~L~~L~L~~C 141 (147)
..+++|++|+|+++
T Consensus 261 ~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 261 PDLKLLQVVYLHTN 274 (332)
T ss_dssp GGCTTCCEEECCSS
T ss_pred hcCccCCEEECCCC
Confidence 34666666666664
No 108
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=35.40 E-value=5.8 Score=29.57 Aligned_cols=13 Identities=31% Similarity=0.406 Sum_probs=8.4
Q ss_pred hCCCCcEEeccCC
Q 040130 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~cp~L~~L~L~~C 141 (147)
.+++|++|+|+++
T Consensus 179 ~l~~L~~L~L~~N 191 (270)
T 2o6q_A 179 KLTELKTLKLDNN 191 (270)
T ss_dssp TCTTCCEEECCSS
T ss_pred cCCCcCEEECCCC
Confidence 3566777776665
No 109
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=35.12 E-value=5.8 Score=27.89 Aligned_cols=40 Identities=23% Similarity=0.198 Sum_probs=23.4
Q ss_pred HhhcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 040130 97 VFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 97 l~~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C 141 (147)
++..+++|+.|+|+ ...|+.-. ......+++|+.|+|++.
T Consensus 76 ~~~~l~~L~~L~L~----~N~l~~l~-~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 76 VFDKLTQLTQLDLN----DNHLKSIP-RGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp TTTTCTTCCEEECC----SSCCCCCC-TTTTTTCTTCSEEECCSS
T ss_pred HhCCcchhhEEECC----CCccceeC-HHHhccccCCCEEEeCCC
Confidence 34566788888887 33333100 011235788888888774
No 110
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=34.61 E-value=5.8 Score=31.10 Aligned_cols=12 Identities=25% Similarity=0.169 Sum_probs=6.1
Q ss_pred CCCCcEEeccCC
Q 040130 130 CQKLTRLKLRGC 141 (147)
Q Consensus 130 cp~L~~L~L~~C 141 (147)
+++|++|+|++|
T Consensus 294 l~~L~~L~L~~n 305 (390)
T 3o6n_A 294 IPTLKVLDLSHN 305 (390)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCCCEEECCCC
Confidence 445555555554
No 111
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=33.93 E-value=37 Score=28.74 Aligned_cols=12 Identities=8% Similarity=0.003 Sum_probs=8.5
Q ss_pred CCCCcEEeccCC
Q 040130 130 CQKLTRLKLRGC 141 (147)
Q Consensus 130 cp~L~~L~L~~C 141 (147)
+++|++|+|++|
T Consensus 304 l~~L~~L~L~~n 315 (636)
T 4eco_A 304 GEKIQIIYIGYN 315 (636)
T ss_dssp GGTCCEEECCSS
T ss_pred CCCCCEEECCCC
Confidence 577777777766
No 112
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=32.43 E-value=6.7 Score=32.97 Aligned_cols=38 Identities=16% Similarity=0.013 Sum_probs=19.8
Q ss_pred hcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 040130 99 SRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 99 ~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C 141 (147)
..+++|+.|+|+ ...++.-.- .....+++|+.|+|++|
T Consensus 96 ~~l~~L~~L~L~----~n~l~~~~~-~~~~~l~~L~~L~L~~n 133 (597)
T 3oja_B 96 AYAHTIQKLYMG----FNAIRYLPP-HVFQNVPLLTVLVLERN 133 (597)
T ss_dssp TTCTTCCEEECC----SSCCCCCCT-TTTTTCTTCCEEECCSS
T ss_pred cCCCCCCEEECC----CCcCCCCCH-HHHcCCCCCCEEEeeCC
Confidence 445566666665 222332111 11235677777777776
No 113
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=32.27 E-value=6.6 Score=32.61 Aligned_cols=13 Identities=15% Similarity=0.117 Sum_probs=8.4
Q ss_pred hCCCCcEEeccCC
Q 040130 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~cp~L~~L~L~~C 141 (147)
.+++|++|+|+++
T Consensus 151 ~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 151 NLTNLVHVDLSYN 163 (606)
T ss_dssp TCTTCCEEECCSS
T ss_pred hcCCCCEEEccCC
Confidence 4666666666665
No 114
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=31.50 E-value=47 Score=29.88 Aligned_cols=13 Identities=8% Similarity=-0.072 Sum_probs=8.6
Q ss_pred hCCCCcEEeccCC
Q 040130 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~cp~L~~L~L~~C 141 (147)
.+++|++|+|++|
T Consensus 546 ~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 546 TGPKIQIFYMGYN 558 (876)
T ss_dssp TTTTCCEEECCSS
T ss_pred ccCCccEEEeeCC
Confidence 4557777777765
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=31.35 E-value=9.4 Score=33.35 Aligned_cols=13 Identities=15% Similarity=0.245 Sum_probs=7.9
Q ss_pred hCCCCcEEeccCC
Q 040130 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~cp~L~~L~L~~C 141 (147)
.+++|++|+|+++
T Consensus 291 ~l~~L~~L~L~~N 303 (727)
T 4b8c_D 291 SCFQLKYFYFFDN 303 (727)
T ss_dssp GGTTCSEEECCSS
T ss_pred CCCCCCEEECCCC
Confidence 4566666666655
No 116
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=29.38 E-value=19 Score=30.49 Aligned_cols=35 Identities=11% Similarity=0.087 Sum_probs=21.7
Q ss_pred ccceeeceeccCCCCcccHHHHHH--HHHhCCCCcEEeccCCC
Q 040130 102 DSVTKLALRCDRKSISLDDDALVL--ISLRCQKLTRLKLRGCR 142 (147)
Q Consensus 102 ~~L~~L~L~c~~~c~~itD~~L~~--la~~cp~L~~L~L~~C~ 142 (147)
++|++|+|+ ...++ .+-. ....+++|++|+|+++.
T Consensus 305 ~~L~~L~L~----~n~l~--~ip~~~~l~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 305 EKIQIIYIG----YNNLK--TFPVETSLQKMKKLGMLECLYNQ 341 (636)
T ss_dssp GTCCEEECC----SSCCS--SCCCHHHHTTCTTCCEEECCSCC
T ss_pred CCCCEEECC----CCcCC--ccCchhhhccCCCCCEEeCcCCc
Confidence 566666665 22333 2222 34568999999999874
No 117
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=29.29 E-value=7.5 Score=32.18 Aligned_cols=13 Identities=23% Similarity=0.100 Sum_probs=9.0
Q ss_pred hCCCCcEEeccCC
Q 040130 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~cp~L~~L~L~~C 141 (147)
.+++|++|+|+++
T Consensus 119 ~l~~L~~L~Ls~N 131 (562)
T 3a79_B 119 PMASLRHLDLSFN 131 (562)
T ss_dssp CCTTCSEEECCSS
T ss_pred ccccCCEEECCCC
Confidence 5677777777765
No 118
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=28.93 E-value=19 Score=28.81 Aligned_cols=11 Identities=36% Similarity=0.425 Sum_probs=5.0
Q ss_pred CCCCcEEeccC
Q 040130 130 CQKLTRLKLRG 140 (147)
Q Consensus 130 cp~L~~L~L~~ 140 (147)
+++|+.|+|++
T Consensus 175 l~~L~~L~l~~ 185 (477)
T 2id5_A 175 LHGLIVLRLRH 185 (477)
T ss_dssp CTTCCEEEEES
T ss_pred cCCCcEEeCCC
Confidence 44444444444
No 119
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=28.90 E-value=8.4 Score=31.68 Aligned_cols=13 Identities=23% Similarity=0.284 Sum_probs=6.6
Q ss_pred hCCCCcEEeccCC
Q 040130 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~cp~L~~L~L~~C 141 (147)
.+++|++|+|+++
T Consensus 171 ~l~~L~~L~L~~N 183 (635)
T 4g8a_A 171 NLTNLEHLDLSSN 183 (635)
T ss_dssp GCTTCCEEECCSS
T ss_pred cchhhhhhcccCc
Confidence 3455555555543
No 120
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=28.71 E-value=9.9 Score=28.87 Aligned_cols=39 Identities=21% Similarity=0.088 Sum_probs=22.1
Q ss_pred hhcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 040130 98 FSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C 141 (147)
...+++|+.|+|+ ...++.-.- .....+++|++|+|+++
T Consensus 96 ~~~l~~L~~L~l~----~N~l~~l~~-~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 96 GQTLPALTVLDVS----FNRLTSLPL-GALRGLGELQELYLKGN 134 (290)
T ss_dssp TTTCTTCCEEECC----SSCCCCCCS-STTTTCTTCCEEECTTS
T ss_pred hccCCCCCEEECC----CCcCcccCH-HHHcCCCCCCEEECCCC
Confidence 3456677777776 233331100 11235678888888876
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=27.83 E-value=24 Score=26.94 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=29.8
Q ss_pred cCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 040130 100 RFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 100 r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C 141 (147)
.+.+|++|.++ + .+....+..+...+++|+.|+|++.
T Consensus 23 ~~~~l~~L~l~---g--~i~~~~~~~l~~~l~~L~~LdLs~n 59 (329)
T 3sb4_A 23 EANSITHLTLT---G--KLNAEDFRHLRDEFPSLKVLDISNA 59 (329)
T ss_dssp HHHHCSEEEEE---E--EECHHHHHHHHHSCTTCCEEEEEEE
T ss_pred hhCceeEEEEe---c--cccHHHHHHHHHhhccCeEEecCcc
Confidence 45789999998 3 3677788888777999999999875
No 122
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=27.54 E-value=7.2 Score=32.35 Aligned_cols=12 Identities=33% Similarity=0.490 Sum_probs=5.7
Q ss_pred CCCCcEEeccCC
Q 040130 130 CQKLTRLKLRGC 141 (147)
Q Consensus 130 cp~L~~L~L~~C 141 (147)
+++|++|+|++|
T Consensus 448 l~~L~~L~L~~n 459 (606)
T 3t6q_A 448 LPALQHLNLQGN 459 (606)
T ss_dssp CTTCCEEECTTC
T ss_pred CCCCCEEECCCC
Confidence 444444444444
No 123
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.71 E-value=18 Score=30.27 Aligned_cols=14 Identities=21% Similarity=0.207 Sum_probs=9.2
Q ss_pred HhCCCCcEEeccCC
Q 040130 128 LRCQKLTRLKLRGC 141 (147)
Q Consensus 128 ~~cp~L~~L~L~~C 141 (147)
..+++|+.|+|++|
T Consensus 321 ~~l~~L~~L~L~~N 334 (597)
T 3oja_B 321 PQFDRLENLYLDHN 334 (597)
T ss_dssp HHHTTCSEEECCSS
T ss_pred ccCCCCCEEECCCC
Confidence 34667777777665
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=26.48 E-value=9.1 Score=29.93 Aligned_cols=39 Identities=18% Similarity=0.075 Sum_probs=20.6
Q ss_pred hhcCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 040130 98 FSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C 141 (147)
+..+++|+.|+|+ ...|+.-.-. ....+++|++|+|+++
T Consensus 108 ~~~l~~L~~L~L~----~N~i~~~~~~-~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 108 FSDLQALEVLLLY----NNHIVVVDRN-AFEDMAQLQKLYLSQN 146 (361)
T ss_dssp TTTCTTCCEEECC----SSCCCEECTT-TTTTCTTCCEEECCSS
T ss_pred hCCCcCCCEEECC----CCcccEECHH-HhCCcccCCEEECCCC
Confidence 3455667777776 2233211101 1234677888888775
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=26.40 E-value=17 Score=30.73 Aligned_cols=13 Identities=23% Similarity=0.207 Sum_probs=7.9
Q ss_pred hCCCCcEEeccCC
Q 040130 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~cp~L~~L~L~~C 141 (147)
.+++|+.|+|+++
T Consensus 506 ~l~~L~~L~Ls~N 518 (567)
T 1dce_A 506 NLPRLQELLLCNN 518 (567)
T ss_dssp TCSSCCEEECCSS
T ss_pred CCCCCcEEECCCC
Confidence 4566666666654
No 126
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=26.38 E-value=9.4 Score=33.59 Aligned_cols=11 Identities=27% Similarity=0.558 Sum_probs=5.3
Q ss_pred cCccceeecee
Q 040130 100 RFDSVTKLALR 110 (147)
Q Consensus 100 r~~~L~~L~L~ 110 (147)
.+++|++|+|+
T Consensus 121 ~L~~L~~L~Ls 131 (844)
T 3j0a_A 121 NLKALTRLDLS 131 (844)
T ss_dssp SCSSCCEEEEE
T ss_pred ccCCCCEEECC
Confidence 33445555554
No 127
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=26.13 E-value=18 Score=29.44 Aligned_cols=13 Identities=31% Similarity=0.146 Sum_probs=8.4
Q ss_pred hCCCCcEEeccCC
Q 040130 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~cp~L~~L~L~~C 141 (147)
.+++|++|+|+++
T Consensus 104 ~l~~L~~L~L~~N 116 (457)
T 3bz5_A 104 PLTKLTYLNCDTN 116 (457)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCCcCCEEECCCC
Confidence 4666666666665
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=24.51 E-value=14 Score=32.30 Aligned_cols=36 Identities=28% Similarity=0.258 Sum_probs=16.9
Q ss_pred cCccceeeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 040130 100 RFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 100 r~~~L~~L~L~c~~~c~~itD~~L~~la~~cp~L~~L~L~~C 141 (147)
.+++|++|+|+ ...|+ .+-.-...+++|+.|+|+++
T Consensus 245 ~l~~L~~L~Ls----~N~l~--~lp~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 245 KYDFLTRLYLN----GNSLT--ELPAEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp GCCSCSCCBCT----TSCCS--CCCGGGGGGTTCCEEECTTS
T ss_pred CCCCCCEEEee----CCcCc--ccChhhhCCCCCCEEeCcCC
Confidence 45566666665 22333 11111134566666666654
No 129
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=23.24 E-value=22 Score=28.94 Aligned_cols=14 Identities=21% Similarity=0.176 Sum_probs=7.0
Q ss_pred hCCCCcEEeccCCC
Q 040130 129 RCQKLTRLKLRGCR 142 (147)
Q Consensus 129 ~cp~L~~L~L~~C~ 142 (147)
.+++|++|++++|.
T Consensus 146 ~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 146 HNTQLTELDCHLNK 159 (457)
T ss_dssp TCTTCCEEECTTCS
T ss_pred cCCcCCEEECCCCC
Confidence 34555555555543
No 130
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=22.40 E-value=38 Score=27.87 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=18.1
Q ss_pred hcCccceeeceeccCCCCcccH-HHHHHHHHhCCCCcEEeccCC
Q 040130 99 SRFDSVTKLALRCDRKSISLDD-DALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 99 ~r~~~L~~L~L~c~~~c~~itD-~~L~~la~~cp~L~~L~L~~C 141 (147)
..+++|++|+|+ ...++. ..+......+++|++|+|+++
T Consensus 374 ~~l~~L~~L~L~----~N~l~~~~~~~~~~~~l~~L~~L~l~~N 413 (562)
T 3a79_B 374 STLKRLQTLILQ----RNGLKNFFKVALMTKNMSSLETLDVSLN 413 (562)
T ss_dssp CSCSSCCEEECC----SSCCCBTTHHHHTTTTCTTCCEEECTTS
T ss_pred cccCCCCEEECC----CCCcCCcccchhhhcCCCCCCEEECCCC
Confidence 344556666665 223332 111122234566666666654
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=20.93 E-value=34 Score=28.85 Aligned_cols=39 Identities=23% Similarity=0.396 Sum_probs=25.5
Q ss_pred hhcCccceeeceeccCCCCcccHHH-HHHHHHhCCCCcEEeccCC
Q 040130 98 FSRFDSVTKLALRCDRKSISLDDDA-LVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~~~c~~itD~~-L~~la~~cp~L~~L~L~~C 141 (147)
+..+++|+.|+|+ .+.++... ... ...+++|+.|+|+++
T Consensus 504 l~~l~~L~~L~Ls----~N~l~~~~~p~~-l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 504 VANLPRLQELLLC----NNRLQQSAAIQP-LVSCPRLVLLNLQGN 543 (567)
T ss_dssp GTTCSSCCEEECC----SSCCCSSSTTGG-GGGCTTCCEEECTTS
T ss_pred cCCCCCCcEEECC----CCCCCCCCCcHH-HhcCCCCCEEEecCC
Confidence 4567889999998 34444321 122 235888999998876
Done!