BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040132
(271 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 22/113 (19%)
Query: 91 YITKISIGSTQFSPYLVVDTGSDDRWL-----QCEGCTSCFPIKGGSFPVKESKTYRGLA 145
Y +K+S+GS + +++DTGS D W+ QC C G+F S +Y+ L
Sbjct: 14 YASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDC--KSSGTFTPSSSSSYKNLG 71
Query: 146 CDHPLCVPKLCSKGLCSYDWKYKEGSEIKGVLSSESFTFPGDKNTSLTFANVT 198
++ +Y +GS +G ++ T G T A+VT
Sbjct: 72 ---------------AAFTIRYGDGSTSQGTWGKDTVTINGVSITGQQIADVT 109
>pdb|1PPL|E Chain E, Crystallographic Analysis Of Transition-State Mimics Bound
To Penicillopepsin: Phosphorus-Containing Peptide
Analogues
pdb|1PPM|E Chain E, Crystallographic Analysis Of Transition-state Mimics Bound
To Penicillopepsin: Phosphorus-containing Peptide
Analogues
pdb|1APT|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APU|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APV|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1APW|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1PPK|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Phosphorous-Containing Peptide
Analogues
pdb|1BXO|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl
Cyclo[(2s)-2-[[(1r)-1-(N-(L-N-(3-
Methylbutanoyl)valyl-L-Aspartyl)amino)-3-Methylbut Yl]
Hydroxyphosphinyloxy]-3-(3-Aminomethyl) Phenylpropanoate
pdb|1BXQ|A Chain A, Acid Proteinase (Penicillopepsin) Complex With Phosphonate
Inhibitor.
pdb|2WEA|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl[cyclo-7[(2r)-((N-Valyl)
Amino)-2-(Hydroxyl-(1s)-1-Methyoxycarbonyl-2-
Phenylethoxy)
Phosphinyloxy-Ethyl]-1-Naphthaleneacetamide], Sodium
Salt
pdb|2WEB|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl(2s)-[1-(((n-formyl)-l-
Valyl)amino-2-(2-naphthyl)ethyl)hydroxyphosphinyloxy]-3-
Phenylpropanoate, Sodium Salt
pdb|2WEC|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl(2s)-[1-(((N-(1-
Naphthaleneacetyl))-L-Valyl)aminomethyl)hydroxy
Phosphinyloxy]-3-Phenylpropanoate, Sodium Salt
pdb|2WED|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Macrocyclic
Inhibitor:methyl[cyclo-7[(2r)-
((n-valyl)amino)-2-(hydroxyl-(1s)-1-methyoxycarbonyl-2-
Phenylethoxy)phosphinyloxy-ethyl]-1-
naphthaleneacetamide], Sodium Salt
pdb|3APP|A Chain A, Structure And Refinement Of Penicillopepsin At 1.8
Angstroms Resolution
Length = 323
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 43/106 (40%), Gaps = 22/106 (20%)
Query: 83 SPFANTNIYITKISIGSTQFSPYLVVDTGSDDRWLQCEGCTSCFPIKGGSFPVKESKTYR 142
+P AN YIT ++IG T + L DTGS D W+ F + P +
Sbjct: 9 TPTANDEEYITPVTIGGTTLN--LNFDTGSADLWV--------FSTE---LPASQQS--- 52
Query: 143 GLACDHPLCVPKLCSKGLCSYDW--KYKEGSEIKGVLSSESFTFPG 186
H + P K L Y W Y +GS G + ++S T G
Sbjct: 53 ----GHSVYNPSATGKELSGYTWSISYGDGSSASGNVFTDSVTVGG 94
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 44/116 (37%), Gaps = 24/116 (20%)
Query: 91 YITKISIGSTQFSPYLVVDTGSDDRWL---------QCEGCTSCFPIKGGSFPVKESKTY 141
Y I++GS ++VDTGS D W+ + G F GS+ S+T
Sbjct: 14 YTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSRTS 73
Query: 142 RGLACDHPLCVPKLCSKGLCSYDWKYKEGSEIKGVLSSESFTFPGDKNTSLTFANV 197
+ L +D KY +GS KG L ++ G FANV
Sbjct: 74 QNLN---------------TRFDIKYGDGSYAKGKLYKDTVGIGGVSVRDQLFANV 114
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 55/140 (39%), Gaps = 24/140 (17%)
Query: 91 YITKISIGSTQFSPYLVVDTGSDDRWLQCEGCTSCFPIKGGSFPVKESK---TYRGLACD 147
Y I+IGS + ++VDTGS D W+ T P G S + K T +
Sbjct: 14 YAADITIGSNKQKFNVIVDTGSSDLWVPDASVTCDKPRPGQSADFCKGKGIYTPKSSTTS 73
Query: 148 HPLCVPKLCSKGLCSYDWKYKEGSEIKGVLSSESFTFPGDKNTSLTFANVT--------F 199
L P + Y +GS +G L ++ F G T FA++T
Sbjct: 74 QNLGTP---------FYIGYGDGSSSQGTLYKDTVGFGGASITKQVFADITKTSIPQGIL 124
Query: 200 GCGYDNQNVSFGGYMGSDNI 219
G GY N + G Y DN+
Sbjct: 125 GIGY-KTNEAAGDY---DNV 140
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 91 YITKISIGSTQFSPYLVVDTGSDDRWL-----QCE----GCTSCFPIKGGSFPVKESKTY 141
Y I +GS Q +V+DTGS D W+ +C+ G T+ F + G+F S +
Sbjct: 14 YAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSA 73
Query: 142 RGLACDHPLCVPKLCS 157
+ L D + L S
Sbjct: 74 QNLNQDFSIEYGDLTS 89
>pdb|4H63|H Chain H, Structure Of The Schizosaccharomyces Pombe Mediator Head
Module
Length = 200
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 25/134 (18%)
Query: 48 SPEEIHHRIAQLSRARALQLGSKQEPETLKPPVYPSPFANTNIYITKISIGSTQFSPYLV 107
S E I HRIAQ+ ++ L + E+L P +P+ N NI +++I S + +
Sbjct: 12 SLEAIRHRIAQIVQSLTHFLAILHQSESLSP--WPTIHKNFNILLSQIHSLSNNLAAH-- 67
Query: 108 VDTGSDDRWLQCEGCTSCFPIKGGSFPVKESKTYRGLACDHPLCVPKLCSKGLCSY-DWK 166
LQ TS +P FPVKE + PL L +K L +W+
Sbjct: 68 ------SHTLQ---TTSIYP--SLEFPVKEQE---------PLLTTLLRTKALPEVEEWE 107
Query: 167 YKEGSEIKGVLSSE 180
E + +SS+
Sbjct: 108 ANTLQEYEASISSQ 121
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 42/113 (37%), Gaps = 1/113 (0%)
Query: 91 YITKISIGSTQFSPYLVVDTGSDDRWLQCEGCTSCFPIKGGSFPVKESKTYRGLACDHPL 150
Y ISIGS + ++ DTGS + W+ CTS F +S TY +
Sbjct: 25 YFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYSQPGQSFSI 84
Query: 151 CVPKLCSKGLCSYDWKYKEGSEIKGVLSSESFTFPGDKNTSLTFANVTFGCGY 203
G+ D EG + G ES T PG F + G GY
Sbjct: 85 QYGTGSLSGIIGADQVSVEGLTVVGQQFGESVTEPGQTFVDAEFDGI-LGLGY 136
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 91 YITKISIGSTQFSPYLVVDTGSDDRWLQCEGC 122
Y +SIG+ YL+ DTGS D W+ +GC
Sbjct: 20 YAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGC 51
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 91 YITKISIGSTQFSPYLVVDTGSDDRWLQCEGCT 123
Y +SIG+ L+ DTGS D W+ +GCT
Sbjct: 20 YAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCT 52
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 30/74 (40%)
Query: 91 YITKISIGSTQFSPYLVVDTGSDDRWLQCEGCTSCFPIKGGSFPVKESKTYRGLACDHPL 150
Y KI IG+ +V DTGS D W+ C S F ++S T+R L +
Sbjct: 13 YFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRNLGKPLSI 72
Query: 151 CVPKLCSKGLCSYD 164
+G YD
Sbjct: 73 HYGTGSMEGFLGYD 86
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 14/100 (14%)
Query: 91 YITKISIGSTQFSPYLVVDTGSDDRWLQCEG--CTSCFPIKGGSFPVKESKTY--RGLAC 146
Y I++GS ++VDTGS D W+ C + + F K+ TY G +
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNIDCQVTYSDQTADF-CKQKGTYDPSGSSA 72
Query: 147 DHPLCVPKLCSKGLCSYDWKYKEGSEIKGVLSSESFTFPG 186
L P + Y +GS +G L ++ F G
Sbjct: 73 SQDLNTP---------FSIGYGDGSSSQGTLYKDTVGFGG 103
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 14/100 (14%)
Query: 91 YITKISIGSTQFSPYLVVDTGSDDRWL--QCEGCTSCFPIKGGSFPVKESKTY--RGLAC 146
Y I++GS ++VDTGS D W+ C + + F K+ TY G +
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADF-CKQKGTYDPSGSSA 72
Query: 147 DHPLCVPKLCSKGLCSYDWKYKEGSEIKGVLSSESFTFPG 186
L P + Y +GS +G L ++ F G
Sbjct: 73 SQDLNTP---------FKIGYGDGSSSQGTLYKDTVGFGG 103
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 75 TLKPPVYPSPFANTNIYITKISIGS-TQFSPYLVVDTGSDDRWL 117
T P +PS A++ YIT +SIG+ Q P L DTGS D W+
Sbjct: 2 TGSAPNHPSDSADSE-YITSVSIGTPAQVLP-LDFDTGSSDLWV 43
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 91 YITKISIGSTQFSPYLVVDTGSDDRWLQCE 120
Y+ + +GS + L+VDTGS + WL +
Sbjct: 14 YVVNVGVGSPATTYSLLVDTGSSNTWLGAD 43
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 91 YITKISIGSTQFSPYLVVDTGSDDRWL 117
Y + I++GS + +V+DTGS D W+
Sbjct: 14 YASDITVGSNKQKLTVVIDTGSSDLWV 40
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 16/104 (15%)
Query: 83 SPFANTNIYITKISIGSTQFSPYLVVDTGSDDRWLQCEGCTSCFPIKGGSFPVKESKTYR 142
+ + N Y +++IG+ L DTGS D W+ CT+C + + +S TY+
Sbjct: 9 TDYGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGS-RQTKYDPNQSSTYQ 67
Query: 143 GLACDHPLCVPKLCSKGLCSYDWKYKEGSEIKGVLSSESFTFPG 186
++ Y +GS G+L+ ++ G
Sbjct: 68 ADG---------------RTWSISYGDGSSASGILAKDNVNLGG 96
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 24/108 (22%)
Query: 83 SPFANTNIYITKISIGSTQFSPYLVVDTGSDDRWLQCEGCTSCFPIKGGSFPVK----ES 138
+ + N Y +++IG+ L DTGS D W+ CT+C GS K +S
Sbjct: 9 TDYGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC-----GSGQTKYDPNQS 63
Query: 139 KTYRGLACDHPLCVPKLCSKGLCSYDWKYKEGSEIKGVLSSESFTFPG 186
TY+ ++ Y +GS G+L+ ++ G
Sbjct: 64 STYQADG---------------RTWSISYGDGSSASGILAKDNVNLGG 96
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 91 YITKISIGSTQFSPYLVVDTGSDDRWLQCEGCTSCFPIKGGSFPVKESKTY 141
Y ISIG+ S ++ DTGS + W+ C++ F ++S TY
Sbjct: 14 YYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNKFKPRQSSTY 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,499,012
Number of Sequences: 62578
Number of extensions: 355315
Number of successful extensions: 639
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 612
Number of HSP's gapped (non-prelim): 36
length of query: 271
length of database: 14,973,337
effective HSP length: 97
effective length of query: 174
effective length of database: 8,903,271
effective search space: 1549169154
effective search space used: 1549169154
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)