Query 040132
Match_columns 271
No_of_seqs 213 out of 1515
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 05:26:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040132.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040132hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 3.8E-49 8.3E-54 371.5 27.9 237 22-269 19-260 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 8.5E-37 1.8E-41 285.4 20.1 177 86-270 42-224 (398)
3 PF14543 TAXi_N: Xylanase inhi 100.0 2.1E-37 4.6E-42 255.9 14.0 157 91-267 1-164 (164)
4 cd06096 Plasmepsin_5 Plasmepsi 100.0 3.9E-33 8.4E-38 254.2 18.8 169 89-270 2-182 (326)
5 PTZ00165 aspartyl protease; Pr 100.0 9E-32 1.9E-36 255.8 24.1 166 77-270 110-287 (482)
6 cd05478 pepsin_A Pepsin A, asp 100.0 1.1E-30 2.3E-35 237.1 18.9 154 87-270 7-169 (317)
7 cd05490 Cathepsin_D2 Cathepsin 100.0 9.3E-31 2E-35 238.2 18.1 155 86-270 2-169 (325)
8 cd05477 gastricsin Gastricsins 100.0 3.2E-30 7E-35 234.0 19.1 154 88-270 1-163 (318)
9 cd05486 Cathespin_E Cathepsin 100.0 1.2E-29 2.6E-34 230.2 16.8 152 91-270 1-161 (316)
10 cd06097 Aspergillopepsin_like 100.0 1.9E-29 4.2E-34 224.8 17.4 150 91-270 1-160 (278)
11 PTZ00147 plasmepsin-1; Provisi 100.0 5.9E-29 1.3E-33 234.9 21.3 160 77-270 129-299 (453)
12 cd06098 phytepsin Phytepsin, a 100.0 4E-29 8.6E-34 227.0 18.3 155 86-270 6-172 (317)
13 cd05485 Cathepsin_D_like Cathe 100.0 3.1E-29 6.8E-34 228.8 17.7 155 86-270 7-174 (329)
14 cd05488 Proteinase_A_fungi Fun 100.0 4E-29 8.6E-34 227.2 17.9 154 87-270 7-169 (320)
15 cd05475 nucellin_like Nucellin 100.0 1E-28 2.2E-33 219.9 17.1 135 89-268 1-138 (273)
16 cd05487 renin_like Renin stimu 100.0 1.6E-28 3.4E-33 223.8 18.1 156 86-270 4-170 (326)
17 PTZ00013 plasmepsin 4 (PM4); P 100.0 6.5E-28 1.4E-32 227.5 22.1 154 86-270 134-298 (450)
18 cd05472 cnd41_like Chloroplast 100.0 1E-28 2.3E-33 222.2 14.3 128 90-270 1-128 (299)
19 cd05489 xylanase_inhibitor_I_l 100.0 7E-28 1.5E-32 222.5 14.9 149 97-269 2-172 (362)
20 cd05471 pepsin_like Pepsin-lik 99.9 1.1E-26 2.4E-31 205.9 19.0 151 91-270 1-162 (283)
21 cd05473 beta_secretase_like Be 99.9 3.9E-26 8.5E-31 211.0 17.3 154 89-270 2-170 (364)
22 cd05476 pepsin_A_like_plant Ch 99.9 7.2E-26 1.6E-30 200.5 14.8 127 90-270 1-127 (265)
23 cd05470 pepsin_retropepsin_lik 99.9 3.1E-25 6.8E-30 170.5 13.6 108 93-226 1-109 (109)
24 PF00026 Asp: Eukaryotic aspar 99.9 6.7E-25 1.5E-29 197.8 11.5 151 90-270 1-162 (317)
25 cd05474 SAP_like SAPs, pepsin- 99.9 1.2E-22 2.6E-27 182.0 15.3 117 90-270 2-132 (295)
26 cd05483 retropepsin_like_bacte 98.0 2.6E-05 5.7E-10 57.4 7.6 94 89-228 1-94 (96)
27 TIGR02281 clan_AA_DTGA clan AA 96.0 0.059 1.3E-06 42.0 8.8 94 88-227 9-102 (121)
28 PF13650 Asp_protease_2: Aspar 95.9 0.1 2.3E-06 37.4 9.1 89 94-228 2-90 (90)
29 cd05479 RP_DDI RP_DDI; retrope 93.6 0.68 1.5E-05 36.1 8.8 31 88-120 14-44 (124)
30 cd05484 retropepsin_like_LTR_2 90.2 0.32 7E-06 35.5 3.1 28 91-120 1-28 (91)
31 PF13975 gag-asp_proteas: gag- 86.3 1.5 3.2E-05 30.7 4.3 34 87-122 5-38 (72)
32 PF00077 RVP: Retroviral aspar 82.6 1.9 4E-05 31.8 3.7 27 92-120 7-33 (100)
33 COG3577 Predicted aspartyl pro 71.9 16 0.00035 31.1 6.6 71 87-186 102-172 (215)
34 cd05482 HIV_retropepsin_like R 67.2 7.3 0.00016 28.5 3.2 25 94-120 2-26 (87)
35 cd06095 RP_RTVL_H_like Retrope 58.4 12 0.00026 26.9 3.0 19 102-120 8-26 (86)
36 PF08194 DIM: DIM protein; In 50.1 24 0.00052 21.4 2.8 14 3-16 1-14 (36)
37 PF12384 Peptidase_A2B: Ty3 tr 50.0 23 0.00049 29.3 3.6 30 89-120 33-62 (177)
38 TIGR03698 clan_AA_DTGF clan AA 40.5 35 0.00076 25.7 3.2 26 93-118 2-32 (107)
39 PF09668 Asp_protease: Asparty 40.3 48 0.001 25.9 4.0 37 88-126 22-58 (124)
40 cd06098 phytepsin Phytepsin, a 30.0 64 0.0014 29.0 3.7 32 89-120 188-227 (317)
41 cd05475 nucellin_like Nucellin 30.0 58 0.0013 28.5 3.4 32 89-120 157-194 (273)
42 PRK09458 pspB phage shock prot 26.5 67 0.0015 22.8 2.4 18 1-18 1-18 (75)
43 PLN03146 aspartyl protease fam 25.2 97 0.0021 29.4 4.2 16 105-120 309-324 (431)
44 cd06097 Aspergillopepsin_like 24.3 59 0.0013 28.5 2.4 32 89-120 177-215 (278)
45 cd06096 Plasmepsin_5 Plasmepsi 23.6 64 0.0014 29.1 2.5 32 89-120 208-248 (326)
46 cd05471 pepsin_like Pepsin-lik 22.5 58 0.0013 28.0 2.0 34 88-121 179-220 (283)
47 cd05472 cnd41_like Chloroplast 22.5 64 0.0014 28.5 2.3 32 89-120 146-188 (299)
48 cd00303 retropepsin_like Retro 22.0 83 0.0018 20.5 2.3 19 95-115 3-21 (92)
49 PF05585 DUF1758: Putative pep 21.9 44 0.00096 26.9 1.0 20 101-120 10-29 (164)
50 cd06094 RP_Saci_like RP_Saci_l 21.7 81 0.0018 23.2 2.2 20 102-121 8-27 (89)
51 cd05474 SAP_like SAPs, pepsin- 20.5 87 0.0019 27.4 2.7 20 102-121 177-196 (295)
52 PF08284 RVP_2: Retroviral asp 20.3 1.4E+02 0.0031 23.4 3.6 31 88-120 19-49 (135)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=3.8e-49 Score=371.49 Aligned_cols=237 Identities=28% Similarity=0.540 Sum_probs=200.5
Q ss_pred hccCcceEEEEecCCCCCCCCCCCCCCcHHHHHHHHHHhHHHHHHhcCCCCCCCCCCCcccCCCCCCceEEEEEeecCCC
Q 040132 22 TRKINGFRIELTPRTSIDSALFPKDLSPEEIHHRIAQLSRARALQLGSKQEPETLKPPVYPSPFANTNIYITKISIGSTQ 101 (271)
Q Consensus 22 ~~~~~~~~~~L~h~~s~~s~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~pl~~~~~~~~~~Y~~~i~iGtP~ 101 (271)
.++.++++++|+||+++|+|+++++.++.++++++++|+.+|++++.++.. ...|+..+...++++|+++|.|||||
T Consensus 19 ~~~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~~~~~~~~~~~~Y~v~i~iGTPp 95 (431)
T PLN03146 19 EAPKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDA---SPNDPQSDLISNGGEYLMNISIGTPP 95 (431)
T ss_pred cccCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhccc---cCCccccCcccCCccEEEEEEcCCCC
Confidence 456788999999999999999888888889999999999999999864422 22345444444588999999999999
Q ss_pred ceeEEEEeCCCCceeeeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCC----CCcCCCC-ceeEEEcCCCceEEEE
Q 040132 102 FSPYLVVDTGSDDRWLQCEGCTSCFPIKGGSFPVKESKTYRGLACDHPLCVP----KLCSKGL-CSYDWKYKEGSEIKGV 176 (271)
Q Consensus 102 q~~~l~~DTGS~~~Wv~c~~C~~C~~~~~~~y~p~~SsT~~~~~C~s~~C~~----~~C~~~~-c~~~~~Y~~Gs~~~G~ 176 (271)
|++.|++||||+++||+|.+|..|..+.++.|||++|+||+.++|+++.|.. ..|..++ |.|.+.|+||+.+.|.
T Consensus 96 q~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~~~c~y~i~Ygdgs~~~G~ 175 (431)
T PLN03146 96 VPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENTCTYSYSYGDGSFTKGN 175 (431)
T ss_pred ceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCCCCCeeEEEeCCCCceeeE
Confidence 9999999999999999999999999888999999999999999999999986 3476655 9999999999888999
Q ss_pred EEEEEEEecCCCCCceeecceEEEeEEecCCCcccccCCCCCCcceEEecCCCCCChHHhhcccCCCcEEEEecCCCCCC
Q 040132 177 LSSESFTFPGDKNTSLTFANVTFGCGYDNQNVSFGGYMGSDNIIAGVFGLRAGQRSILRQLEPETNVRFSYCLRLYPTTD 256 (271)
Q Consensus 177 ~~~D~v~~~~~~~~~~~~~~~~FGc~~~~~~~~f~~~~~~~~~~dGIlGLg~~~~S~~~ql~~~~~~~FS~cL~~~~~~~ 256 (271)
+++|+|+|++..++...++++.|||++.+.+ .|. ...+||||||++++|+++||...+.++|||||++..++.
T Consensus 176 l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g-~f~------~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL~~~~~~~ 248 (431)
T PLN03146 176 LAVETLTIGSTSGRPVSFPGIVFGCGHNNGG-TFD------EKGSGIVGLGGGPLSLISQLGSSIGGKFSYCLVPLSSDS 248 (431)
T ss_pred EEEEEEEeccCCCCcceeCCEEEeCCCCCCC-Ccc------CCCceeEecCCCCccHHHHhhHhhCCcEEEECCCCCCCC
Confidence 9999999986543345789999999998876 553 258999999999999999998766679999998643221
Q ss_pred CCCCceEEeCCCC
Q 040132 257 GSNTTYLRFGPVT 269 (271)
Q Consensus 257 ~~~~g~l~fG~~~ 269 (271)
. ..|+|+||+.+
T Consensus 249 ~-~~g~l~fG~~~ 260 (431)
T PLN03146 249 N-GTSKINFGTNA 260 (431)
T ss_pred C-CcceEEeCCcc
Confidence 1 47999999853
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-37 Score=285.36 Aligned_cols=177 Identities=34% Similarity=0.635 Sum_probs=149.4
Q ss_pred CCCceEEEEEeecCCCceeEEEEeCCCCceeeeCCCCC-CCCCCCCCCCCCCCCCcccccCCCCCCCCC--CCcCCCC-c
Q 040132 86 ANTNIYITKISIGSTQFSPYLVVDTGSDDRWLQCEGCT-SCFPIKGGSFPVKESKTYRGLACDHPLCVP--KLCSKGL-C 161 (271)
Q Consensus 86 ~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~c~~C~-~C~~~~~~~y~p~~SsT~~~~~C~s~~C~~--~~C~~~~-c 161 (271)
..+++|+++|.||||||.|.|++||||+++||+|.+|. .|..+..+.|+|++|+||+.+.|.++.|.. ..|...+ |
T Consensus 42 ~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~~~~~~~C 121 (398)
T KOG1339|consen 42 YSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQSCSPNSSC 121 (398)
T ss_pred ccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccCcccCCcC
Confidence 45789999999999999999999999999999999999 898766666999999999999999999987 3355444 9
Q ss_pred eeEEEcCCCceEEEEEEEEEEEecCCCCCceeecceEEEeEEecCCCcccccCCCCCCcceEEecCCCCCChHHhhcccC
Q 040132 162 SYDWKYKEGSEIKGVLSSESFTFPGDKNTSLTFANVTFGCGYDNQNVSFGGYMGSDNIIAGVFGLRAGQRSILRQLEPET 241 (271)
Q Consensus 162 ~~~~~Y~~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~FGc~~~~~~~~f~~~~~~~~~~dGIlGLg~~~~S~~~ql~~~~ 241 (271)
.|.+.|+||+.++|++++|+|+|++.+ ....++++|||+..+.+. |.. . .+.|||||||++.+|+++|+....
T Consensus 122 ~y~i~Ygd~~~~~G~l~~Dtv~~~~~~--~~~~~~~~FGc~~~~~g~-~~~---~-~~~dGIlGLg~~~~S~~~q~~~~~ 194 (398)
T KOG1339|consen 122 PYSIQYGDGSSTSGYLATDTVTFGGTT--SLPVPNQTFGCGTNNPGS-FGL---F-AAFDGILGLGRGSLSVPSQLPSFY 194 (398)
T ss_pred ceEEEeCCCCceeEEEEEEEEEEcccc--ccccccEEEEeeecCccc-ccc---c-cccceEeecCCCCccceeeccccc
Confidence 999999998899999999999999632 256778999999999873 321 1 478999999999999999998763
Q ss_pred --CCcEEEEecCCCCCCCCCCceEEeCCCCC
Q 040132 242 --NVRFSYCLRLYPTTDGSNTTYLRFGPVTE 270 (271)
Q Consensus 242 --~~~FS~cL~~~~~~~~~~~g~l~fG~~~~ 270 (271)
.++|||||.+...... .+|.|+||+.+.
T Consensus 195 ~~~~~FS~cL~~~~~~~~-~~G~i~fG~~d~ 224 (398)
T KOG1339|consen 195 NAINVFSYCLSSNGSPSS-GGGSIIFGGVDS 224 (398)
T ss_pred CCceeEEEEeCCCCCCCC-CCcEEEECCCcc
Confidence 3469999998643211 379999998764
No 3
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=100.00 E-value=2.1e-37 Score=255.94 Aligned_cols=157 Identities=35% Similarity=0.663 Sum_probs=126.5
Q ss_pred EEEEEeecCCCceeEEEEeCCCCceeeeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCC--C---CcCC--CCcee
Q 040132 91 YITKISIGSTQFSPYLVVDTGSDDRWLQCEGCTSCFPIKGGSFPVKESKTYRGLACDHPLCVP--K---LCSK--GLCSY 163 (271)
Q Consensus 91 Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~c~~C~~C~~~~~~~y~p~~SsT~~~~~C~s~~C~~--~---~C~~--~~c~~ 163 (271)
|+++|.||||+|++.|++||||+++|++| ..+.|+|.+|+||+.++|.++.|.. . .|.. ..|.|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C---------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~y 71 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC---------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCPY 71 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET-------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC---------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcccc
Confidence 89999999999999999999999999999 3678999999999999999999974 1 2332 23999
Q ss_pred EEEcCCCceEEEEEEEEEEEecCCCCCceeecceEEEeEEecCCCcccccCCCCCCcceEEecCCCCCChHHhhcccCCC
Q 040132 164 DWKYKEGSEIKGVLSSESFTFPGDKNTSLTFANVTFGCGYDNQNVSFGGYMGSDNIIAGVFGLRAGQRSILRQLEPETNV 243 (271)
Q Consensus 164 ~~~Y~~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~FGc~~~~~~~~f~~~~~~~~~~dGIlGLg~~~~S~~~ql~~~~~~ 243 (271)
.+.|++++.+.|++++|+|+++..+++...+.++.|||++...+ .+ ...+||||||++++||++||+++..+
T Consensus 72 ~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g-~~-------~~~~GilGLg~~~~Sl~sQl~~~~~~ 143 (164)
T PF14543_consen 72 SQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSG-LF-------YGADGILGLGRGPLSLPSQLASSSGN 143 (164)
T ss_dssp EEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGT-SS-------TTEEEEEE-SSSTTSHHHHHHHH--S
T ss_pred eeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeecccc-CC-------cCCCcccccCCCcccHHHHHHHhcCC
Confidence 99999999999999999999997654446788999999999987 43 37999999999999999999776679
Q ss_pred cEEEEecCCCCCCCCCCceEEeCC
Q 040132 244 RFSYCLRLYPTTDGSNTTYLRFGP 267 (271)
Q Consensus 244 ~FS~cL~~~~~~~~~~~g~l~fG~ 267 (271)
+|||||++.... ..|+|+||+
T Consensus 144 ~FSyCL~~~~~~---~~g~l~fG~ 164 (164)
T PF14543_consen 144 KFSYCLPSSSPS---SSGFLSFGD 164 (164)
T ss_dssp EEEEEB-S-SSS---SEEEEEECS
T ss_pred eEEEECCCCCCC---CCEEEEeCc
Confidence 999999992222 589999996
No 4
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=3.9e-33 Score=254.19 Aligned_cols=169 Identities=27% Similarity=0.425 Sum_probs=138.0
Q ss_pred ceEEEEEeecCCCceeEEEEeCCCCceeeeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCC-CCcCCCCceeEEEc
Q 040132 89 NIYITKISIGSTQFSPYLVVDTGSDDRWLQCEGCTSCFPIKGGSFPVKESKTYRGLACDHPLCVP-KLCSKGLCSYDWKY 167 (271)
Q Consensus 89 ~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~c~~C~~C~~~~~~~y~p~~SsT~~~~~C~s~~C~~-~~C~~~~c~~~~~Y 167 (271)
+.|+++|.||||+|++.|+|||||+++||+|.+|..|..+.++.|+|++|+|++.++|++..|.. ..|.++.|.|.+.|
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~~~~~~~i~Y 81 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLNNKCEYSISY 81 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccccCcCCCCcCcEEEEE
Confidence 58999999999999999999999999999999999998877899999999999999999999966 56777679999999
Q ss_pred CCCceEEEEEEEEEEEecCCCCC--ceeecceEEEeEEecCCCcccccCCCCCCcceEEecCCCCCC-h---HHhhccc-
Q 040132 168 KEGSEIKGVLSSESFTFPGDKNT--SLTFANVTFGCGYDNQNVSFGGYMGSDNIIAGVFGLRAGQRS-I---LRQLEPE- 240 (271)
Q Consensus 168 ~~Gs~~~G~~~~D~v~~~~~~~~--~~~~~~~~FGc~~~~~~~~f~~~~~~~~~~dGIlGLg~~~~S-~---~~ql~~~- 240 (271)
++|+.+.|.+++|+|+|+..... .....++.|||+....+ .|. ....+||||||++..+ + ..++.++
T Consensus 82 ~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~-~~~-----~~~~~GilGLg~~~~~~~~~~~~~l~~~~ 155 (326)
T cd06096 82 SEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETN-LFL-----TQQATGILGLSLTKNNGLPTPIILLFTKR 155 (326)
T ss_pred CCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccC-ccc-----ccccceEEEccCCcccccCchhHHHHHhc
Confidence 99988999999999999853211 11123688999998876 443 2468999999998753 2 1122222
Q ss_pred --C--CCcEEEEecCCCCCCCCCCceEEeCCCCC
Q 040132 241 --T--NVRFSYCLRLYPTTDGSNTTYLRFGPVTE 270 (271)
Q Consensus 241 --~--~~~FS~cL~~~~~~~~~~~g~l~fG~~~~ 270 (271)
. .++||+||++ ..|+|+||+.+.
T Consensus 156 ~~~~~~~~FS~~l~~-------~~G~l~~Gg~d~ 182 (326)
T cd06096 156 PKLKKDKIFSICLSE-------DGGELTIGGYDK 182 (326)
T ss_pred ccccCCceEEEEEcC-------CCeEEEECccCh
Confidence 1 4899999986 369999999764
No 5
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=9e-32 Score=255.83 Aligned_cols=166 Identities=20% Similarity=0.324 Sum_probs=132.9
Q ss_pred CCCcccCCCCCCceEEEEEeecCCCceeEEEEeCCCCceeeeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCc
Q 040132 77 KPPVYPSPFANTNIYITKISIGSTQFSPYLVVDTGSDDRWLQCEGCTSCFPIKGGSFPVKESKTYRGLACDHPLCVPKLC 156 (271)
Q Consensus 77 ~~pl~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~c~~C~~C~~~~~~~y~p~~SsT~~~~~C~s~~C~~~~C 156 (271)
..||.+ +.+.+|+++|+||||||+|.|+|||||+++||+|..|..|....++.|||++|+||+.+.+...
T Consensus 110 ~~~l~n---~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~~~yd~s~SSTy~~~~~~~~------- 179 (482)
T PTZ00165 110 QQDLLN---FHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPHRKFDPKKSSTYTKLKLGDE------- 179 (482)
T ss_pred ceeccc---ccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccccccCCCCccccCCcEecCCCCc-------
Confidence 344544 5689999999999999999999999999999999999864445688999999999998542211
Q ss_pred CCCCceeEEEcCCCceEEEEEEEEEEEecCCCCCceeecceEEEeEEecCCCcccccCCCCCCcceEEecCCCCC-----
Q 040132 157 SKGLCSYDWKYKEGSEIKGVLSSESFTFPGDKNTSLTFANVTFGCGYDNQNVSFGGYMGSDNIIAGVFGLRAGQR----- 231 (271)
Q Consensus 157 ~~~~c~~~~~Y~~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~FGc~~~~~~~~f~~~~~~~~~~dGIlGLg~~~~----- 231 (271)
...+.+.|++|+ ..|.+++|+|+|++ +.++++.|||++...+..|. ....|||||||++.+
T Consensus 180 ---~~~~~i~YGsGs-~~G~l~~DtV~ig~-----l~i~~q~FG~a~~~s~~~f~-----~~~~DGILGLg~~~~s~~s~ 245 (482)
T PTZ00165 180 ---SAETYIQYGTGE-CVLALGKDTVKIGG-----LKVKHQSIGLAIEESLHPFA-----DLPFDGLVGLGFPDKDFKES 245 (482)
T ss_pred ---cceEEEEeCCCc-EEEEEEEEEEEECC-----EEEccEEEEEEEeccccccc-----cccccceeecCCCccccccc
Confidence 125679999996 67999999999984 68999999999987653453 246899999999865
Q ss_pred ----ChHHhhccc---CCCcEEEEecCCCCCCCCCCceEEeCCCCC
Q 040132 232 ----SILRQLEPE---TNVRFSYCLRLYPTTDGSNTTYLRFGPVTE 270 (271)
Q Consensus 232 ----S~~~ql~~~---~~~~FS~cL~~~~~~~~~~~g~l~fG~~~~ 270 (271)
+++.+|.+| .++.||+||++... .+|+|+|||.++
T Consensus 246 ~~~~p~~~~l~~qgli~~~~FS~yL~~~~~----~~G~l~fGGiD~ 287 (482)
T PTZ00165 246 KKALPIVDNIKKQNLLKRNIFSFYMSKDLN----QPGSISFGSADP 287 (482)
T ss_pred CCCCCHHHHHHHcCCcccceEEEEeccCCC----CCCEEEeCCcCH
Confidence 356677766 36899999986432 479999999753
No 6
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=99.97 E-value=1.1e-30 Score=237.15 Aligned_cols=154 Identities=23% Similarity=0.339 Sum_probs=130.3
Q ss_pred CCceEEEEEeecCCCceeEEEEeCCCCceeeeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCcCCCCceeEEE
Q 040132 87 NTNIYITKISIGSTQFSPYLVVDTGSDDRWLQCEGCTSCFPIKGGSFPVKESKTYRGLACDHPLCVPKLCSKGLCSYDWK 166 (271)
Q Consensus 87 ~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~c~~C~~C~~~~~~~y~p~~SsT~~~~~C~s~~C~~~~C~~~~c~~~~~ 166 (271)
.+.+|+++|.||||||++.|+|||||+++||+|..|..|..+.++.|+|++|+|++... |.|.+.
T Consensus 7 ~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~~~f~~~~Sst~~~~~---------------~~~~~~ 71 (317)
T cd05478 7 LDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNHNRFNPRQSSTYQSTG---------------QPLSIQ 71 (317)
T ss_pred cCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccccCcCCCCCCcceeeCC---------------cEEEEE
Confidence 48999999999999999999999999999999999986554568899999999998875 889999
Q ss_pred cCCCceEEEEEEEEEEEecCCCCCceeecceEEEeEEecCCCcccccCCCCCCcceEEecCCCCC------ChHHhhccc
Q 040132 167 YKEGSEIKGVLSSESFTFPGDKNTSLTFANVTFGCGYDNQNVSFGGYMGSDNIIAGVFGLRAGQR------SILRQLEPE 240 (271)
Q Consensus 167 Y~~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~FGc~~~~~~~~f~~~~~~~~~~dGIlGLg~~~~------S~~~ql~~~ 240 (271)
|++|+ +.|.+++|+|+|++ ..++++.|||++...+ .+.. ....+||||||++.+ +++.||+++
T Consensus 72 yg~gs-~~G~~~~D~v~ig~-----~~i~~~~fg~~~~~~~-~~~~----~~~~dGilGLg~~~~s~~~~~~~~~~L~~~ 140 (317)
T cd05478 72 YGTGS-MTGILGYDTVQVGG-----ISDTNQIFGLSETEPG-SFFY----YAPFDGILGLAYPSIASSGATPVFDNMMSQ 140 (317)
T ss_pred ECCce-EEEEEeeeEEEECC-----EEECCEEEEEEEecCc-cccc----cccccceeeeccchhcccCCCCHHHHHHhC
Confidence 99997 78999999999984 6789999999987765 3321 235899999999754 478888877
Q ss_pred --C-CCcEEEEecCCCCCCCCCCceEEeCCCCC
Q 040132 241 --T-NVRFSYCLRLYPTTDGSNTTYLRFGPVTE 270 (271)
Q Consensus 241 --~-~~~FS~cL~~~~~~~~~~~g~l~fG~~~~ 270 (271)
+ +++||+||.+... .+|+|+||+.+.
T Consensus 141 g~i~~~~FS~~L~~~~~----~~g~l~~Gg~d~ 169 (317)
T cd05478 141 GLVSQDLFSVYLSSNGQ----QGSVVTFGGIDP 169 (317)
T ss_pred CCCCCCEEEEEeCCCCC----CCeEEEEcccCH
Confidence 3 5899999997532 479999999753
No 7
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=99.97 E-value=9.3e-31 Score=238.23 Aligned_cols=155 Identities=23% Similarity=0.416 Sum_probs=127.3
Q ss_pred CCCceEEEEEeecCCCceeEEEEeCCCCceeeeCCCCC----CCCCCCCCCCCCCCCCcccccCCCCCCCCCCCcCCCCc
Q 040132 86 ANTNIYITKISIGSTQFSPYLVVDTGSDDRWLQCEGCT----SCFPIKGGSFPVKESKTYRGLACDHPLCVPKLCSKGLC 161 (271)
Q Consensus 86 ~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~c~~C~----~C~~~~~~~y~p~~SsT~~~~~C~s~~C~~~~C~~~~c 161 (271)
+.+.+|+++|.||||||++.|+|||||+++||+|..|. .|. .++.|+|++|+||+... |
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~--~~~~y~~~~SsT~~~~~---------------~ 64 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACW--LHHKYNSSKSSTYVKNG---------------T 64 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCcccc--CcCcCCcccCcceeeCC---------------c
Confidence 45899999999999999999999999999999999997 454 56789999999998643 8
Q ss_pred eeEEEcCCCceEEEEEEEEEEEecCCCCCceeecceEEEeEEecCCCcccccCCCCCCcceEEecCCCCCC------hHH
Q 040132 162 SYDWKYKEGSEIKGVLSSESFTFPGDKNTSLTFANVTFGCGYDNQNVSFGGYMGSDNIIAGVFGLRAGQRS------ILR 235 (271)
Q Consensus 162 ~~~~~Y~~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~FGc~~~~~~~~f~~~~~~~~~~dGIlGLg~~~~S------~~~ 235 (271)
.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||++...+..|. ....+||||||++.+| ++.
T Consensus 65 ~~~i~Yg~G~-~~G~~~~D~v~~g~-----~~~~~~~Fg~~~~~~~~~~~-----~~~~dGilGLg~~~~s~~~~~~~~~ 133 (325)
T cd05490 65 EFAIQYGSGS-LSGYLSQDTVSIGG-----LQVEGQLFGEAVKQPGITFI-----AAKFDGILGMAYPRISVDGVTPVFD 133 (325)
T ss_pred EEEEEECCcE-EEEEEeeeEEEECC-----EEEcCEEEEEEeeccCCccc-----ceeeeEEEecCCccccccCCCCHHH
Confidence 9999999995 78999999999994 67899999999887653342 2368999999998765 445
Q ss_pred hhccc---CCCcEEEEecCCCCCCCCCCceEEeCCCCC
Q 040132 236 QLEPE---TNVRFSYCLRLYPTTDGSNTTYLRFGPVTE 270 (271)
Q Consensus 236 ql~~~---~~~~FS~cL~~~~~~~~~~~g~l~fG~~~~ 270 (271)
+|+++ .+++||+||.+..+.. .+|+|+||+.++
T Consensus 134 ~l~~~g~i~~~~FS~~L~~~~~~~--~~G~l~~Gg~d~ 169 (325)
T cd05490 134 NIMAQKLVEQNVFSFYLNRDPDAQ--PGGELMLGGTDP 169 (325)
T ss_pred HHHhcCCCCCCEEEEEEeCCCCCC--CCCEEEECccCH
Confidence 77765 3689999998643221 379999998653
No 8
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=99.97 E-value=3.2e-30 Score=234.02 Aligned_cols=154 Identities=23% Similarity=0.383 Sum_probs=127.9
Q ss_pred CceEEEEEeecCCCceeEEEEeCCCCceeeeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCcCCCCceeEEEc
Q 040132 88 TNIYITKISIGSTQFSPYLVVDTGSDDRWLQCEGCTSCFPIKGGSFPVKESKTYRGLACDHPLCVPKLCSKGLCSYDWKY 167 (271)
Q Consensus 88 ~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~c~~C~~C~~~~~~~y~p~~SsT~~~~~C~s~~C~~~~C~~~~c~~~~~Y 167 (271)
|..|+++|.||||||++.|++||||+++||+|..|..+....++.|+|++|+||+... |.|.+.|
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~~~f~~~~SsT~~~~~---------------~~~~~~Y 65 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNHTKFNPSQSSTYSTNG---------------ETFSLQY 65 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccccccCCCCcccCCCceECC---------------cEEEEEE
Confidence 4689999999999999999999999999999999985333457899999999998765 8999999
Q ss_pred CCCceEEEEEEEEEEEecCCCCCceeecceEEEeEEecCCCcccccCCCCCCcceEEecCCCC------CChHHhhccc-
Q 040132 168 KEGSEIKGVLSSESFTFPGDKNTSLTFANVTFGCGYDNQNVSFGGYMGSDNIIAGVFGLRAGQ------RSILRQLEPE- 240 (271)
Q Consensus 168 ~~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~FGc~~~~~~~~f~~~~~~~~~~dGIlGLg~~~------~S~~~ql~~~- 240 (271)
++|+ +.|.+++|+|++++ ..++++.|||++...+..|. ....+||||||++. .+++.||+++
T Consensus 66 g~Gs-~~G~~~~D~i~~g~-----~~i~~~~Fg~~~~~~~~~~~-----~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g 134 (318)
T cd05477 66 GSGS-LTGIFGYDTVTVQG-----IIITNQEFGLSETEPGTNFV-----YAQFDGILGLAYPSISAGGATTVMQGMMQQN 134 (318)
T ss_pred CCcE-EEEEEEeeEEEECC-----EEEcCEEEEEEEeccccccc-----ccceeeEeecCcccccccCCCCHHHHHHhcC
Confidence 9996 68999999999984 68899999999987552232 23579999999853 4678898876
Q ss_pred --CCCcEEEEecCCCCCCCCCCceEEeCCCCC
Q 040132 241 --TNVRFSYCLRLYPTTDGSNTTYLRFGPVTE 270 (271)
Q Consensus 241 --~~~~FS~cL~~~~~~~~~~~g~l~fG~~~~ 270 (271)
..++||+||.+.... ..|.|+||+.++
T Consensus 135 ~i~~~~FS~~L~~~~~~---~~g~l~fGg~d~ 163 (318)
T cd05477 135 LLQAPIFSFYLSGQQGQ---QGGELVFGGVDN 163 (318)
T ss_pred CcCCCEEEEEEcCCCCC---CCCEEEEcccCH
Confidence 368999999975322 469999998753
No 9
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=99.97 E-value=1.2e-29 Score=230.16 Aligned_cols=152 Identities=26% Similarity=0.420 Sum_probs=124.5
Q ss_pred EEEEEeecCCCceeEEEEeCCCCceeeeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCcCCCCceeEEEcCCC
Q 040132 91 YITKISIGSTQFSPYLVVDTGSDDRWLQCEGCTSCFPIKGGSFPVKESKTYRGLACDHPLCVPKLCSKGLCSYDWKYKEG 170 (271)
Q Consensus 91 Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~c~~C~~C~~~~~~~y~p~~SsT~~~~~C~s~~C~~~~C~~~~c~~~~~Y~~G 170 (271)
|+++|.||||||++.|+|||||+++||+|..|..+....++.|+|++|+||+... |.|.+.|++|
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~~~y~~~~SsT~~~~~---------------~~~~i~Yg~g 65 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKHNRFQPSESSTYVSNG---------------EAFSIQYGTG 65 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCccceECCCCCcccccCC---------------cEEEEEeCCc
Confidence 8999999999999999999999999999999973222357889999999998765 8999999999
Q ss_pred ceEEEEEEEEEEEecCCCCCceeecceEEEeEEecCCCcccccCCCCCCcceEEecCCCCCC------hHHhhccc---C
Q 040132 171 SEIKGVLSSESFTFPGDKNTSLTFANVTFGCGYDNQNVSFGGYMGSDNIIAGVFGLRAGQRS------ILRQLEPE---T 241 (271)
Q Consensus 171 s~~~G~~~~D~v~~~~~~~~~~~~~~~~FGc~~~~~~~~f~~~~~~~~~~dGIlGLg~~~~S------~~~ql~~~---~ 241 (271)
+ +.|.+++|+|+|++ ..++++.|||+..+.+..|. ....+||||||++..+ +..+|.++ .
T Consensus 66 ~-~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~~-----~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~ 134 (316)
T cd05486 66 S-LTGIIGIDQVTVEG-----ITVQNQQFAESVSEPGSTFQ-----DSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVE 134 (316)
T ss_pred E-EEEEeeecEEEECC-----EEEcCEEEEEeeccCccccc-----ccccceEeccCchhhccCCCCCHHHHHHhcCCCC
Confidence 5 79999999999984 67889999999877653343 2368999999998765 46677765 2
Q ss_pred CCcEEEEecCCCCCCCCCCceEEeCCCCC
Q 040132 242 NVRFSYCLRLYPTTDGSNTTYLRFGPVTE 270 (271)
Q Consensus 242 ~~~FS~cL~~~~~~~~~~~g~l~fG~~~~ 270 (271)
.+.||+||.+..... ..|+|+||+.++
T Consensus 135 ~~~FS~~L~~~~~~~--~~g~l~fGg~d~ 161 (316)
T cd05486 135 LPMFSVYMSRNPNSA--DGGELVFGGFDT 161 (316)
T ss_pred CCEEEEEEccCCCCC--CCcEEEEcccCH
Confidence 578999998743221 479999999753
No 10
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=99.97 E-value=1.9e-29 Score=224.84 Aligned_cols=150 Identities=21% Similarity=0.321 Sum_probs=126.4
Q ss_pred EEEEEeecCCCceeEEEEeCCCCceeeeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCcCCCCceeEEEcCCC
Q 040132 91 YITKISIGSTQFSPYLVVDTGSDDRWLQCEGCTSCFPIKGGSFPVKESKTYRGLACDHPLCVPKLCSKGLCSYDWKYKEG 170 (271)
Q Consensus 91 Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~c~~C~~C~~~~~~~y~p~~SsT~~~~~C~s~~C~~~~C~~~~c~~~~~Y~~G 170 (271)
|+++|+||||||++.|+|||||+++||+|..|..|....++.|+|++|+|++..+ +|.|.+.|++|
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~~--------------~~~~~i~Y~~G 66 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLLP--------------GATWSISYGDG 66 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceecC--------------CcEEEEEeCCC
Confidence 7999999999999999999999999999999998887778889999999998654 38999999999
Q ss_pred ceEEEEEEEEEEEecCCCCCceeecceEEEeEEecCCCcccccCCCCCCcceEEecCCCCCC---------hHHhhccc-
Q 040132 171 SEIKGVLSSESFTFPGDKNTSLTFANVTFGCGYDNQNVSFGGYMGSDNIIAGVFGLRAGQRS---------ILRQLEPE- 240 (271)
Q Consensus 171 s~~~G~~~~D~v~~~~~~~~~~~~~~~~FGc~~~~~~~~f~~~~~~~~~~dGIlGLg~~~~S---------~~~ql~~~- 240 (271)
+.+.|.+++|+|+|++ ..++++.|||++...+..+. ....+||||||++..+ +..+|.++
T Consensus 67 ~~~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~~-----~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~ 136 (278)
T cd06097 67 SSASGIVYTDTVSIGG-----VEVPNQAIELATAVSASFFS-----DTASDGLLGLAFSSINTVQPPKQKTFFENALSSL 136 (278)
T ss_pred CeEEEEEEEEEEEECC-----EEECCeEEEEEeecCccccc-----cccccceeeeccccccccccCCCCCHHHHHHHhc
Confidence 8899999999999984 67899999999987652232 2479999999998654 34455544
Q ss_pred CCCcEEEEecCCCCCCCCCCceEEeCCCCC
Q 040132 241 TNVRFSYCLRLYPTTDGSNTTYLRFGPVTE 270 (271)
Q Consensus 241 ~~~~FS~cL~~~~~~~~~~~g~l~fG~~~~ 270 (271)
.++.||+||.+. ..|+|+|||.++
T Consensus 137 ~~~~Fs~~l~~~------~~G~l~fGg~D~ 160 (278)
T cd06097 137 DAPLFTADLRKA------APGFYTFGYIDE 160 (278)
T ss_pred cCceEEEEecCC------CCcEEEEeccCh
Confidence 358999999862 479999999764
No 11
>PTZ00147 plasmepsin-1; Provisional
Probab=99.97 E-value=5.9e-29 Score=234.94 Aligned_cols=160 Identities=20% Similarity=0.306 Sum_probs=128.9
Q ss_pred CCCcccCCCCCCceEEEEEeecCCCceeEEEEeCCCCceeeeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCc
Q 040132 77 KPPVYPSPFANTNIYITKISIGSTQFSPYLVVDTGSDDRWLQCEGCTSCFPIKGGSFPVKESKTYRGLACDHPLCVPKLC 156 (271)
Q Consensus 77 ~~pl~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~c~~C~~C~~~~~~~y~p~~SsT~~~~~C~s~~C~~~~C 156 (271)
..||.. +.+.+|+++|+||||||++.|+|||||+++||+|..|..|..+.++.|||++|+||+...
T Consensus 129 ~v~L~n---~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~~~yd~s~SsT~~~~~----------- 194 (453)
T PTZ00147 129 NVELKD---LANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEKDG----------- 194 (453)
T ss_pred eeeccc---cCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCCCccCCccCcceEECC-----------
Confidence 345544 347899999999999999999999999999999999986544567899999999998765
Q ss_pred CCCCceeEEEcCCCceEEEEEEEEEEEecCCCCCceeecceEEEeEEecCCC--cccccCCCCCCcceEEecCCCCCC--
Q 040132 157 SKGLCSYDWKYKEGSEIKGVLSSESFTFPGDKNTSLTFANVTFGCGYDNQNV--SFGGYMGSDNIIAGVFGLRAGQRS-- 232 (271)
Q Consensus 157 ~~~~c~~~~~Y~~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~FGc~~~~~~~--~f~~~~~~~~~~dGIlGLg~~~~S-- 232 (271)
|.|.+.|++|+ ++|.+++|+|+|++ ..++ ..|+|+....++ .+. ....|||||||++.+|
T Consensus 195 ----~~f~i~Yg~Gs-vsG~~~~DtVtiG~-----~~v~-~qF~~~~~~~~f~~~~~-----~~~~DGILGLG~~~~S~~ 258 (453)
T PTZ00147 195 ----TKVEMNYVSGT-VSGFFSKDLVTIGN-----LSVP-YKFIEVTDTNGFEPFYT-----ESDFDGIFGLGWKDLSIG 258 (453)
T ss_pred ----CEEEEEeCCCC-EEEEEEEEEEEECC-----EEEE-EEEEEEEeccCcccccc-----cccccceecccCCccccc
Confidence 89999999995 88999999999984 4566 579998876541 111 2368999999998765
Q ss_pred ----hHHhhccc---CCCcEEEEecCCCCCCCCCCceEEeCCCCC
Q 040132 233 ----ILRQLEPE---TNVRFSYCLRLYPTTDGSNTTYLRFGPVTE 270 (271)
Q Consensus 233 ----~~~ql~~~---~~~~FS~cL~~~~~~~~~~~g~l~fG~~~~ 270 (271)
++.+|+.+ ..++||+||++... ..|+|+|||.++
T Consensus 259 ~~~p~~~~L~~qg~I~~~vFS~~L~~~~~----~~G~L~fGGiD~ 299 (453)
T PTZ00147 259 SVDPYVVELKNQNKIEQAVFTFYLPPEDK----HKGYLTIGGIEE 299 (453)
T ss_pred cCCCHHHHHHHcCCCCccEEEEEecCCCC----CCeEEEECCcCh
Confidence 35577766 35789999987432 479999999764
No 12
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=99.96 E-value=4e-29 Score=226.95 Aligned_cols=155 Identities=25% Similarity=0.400 Sum_probs=127.3
Q ss_pred CCCceEEEEEeecCCCceeEEEEeCCCCceeeeCCCCC---CCCCCCCCCCCCCCCCcccccCCCCCCCCCCCcCCCCce
Q 040132 86 ANTNIYITKISIGSTQFSPYLVVDTGSDDRWLQCEGCT---SCFPIKGGSFPVKESKTYRGLACDHPLCVPKLCSKGLCS 162 (271)
Q Consensus 86 ~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~c~~C~---~C~~~~~~~y~p~~SsT~~~~~C~s~~C~~~~C~~~~c~ 162 (271)
+.+.+|+++|.||||||++.|+|||||+++||+|..|. .|. .++.|+|++|+||+... ..
T Consensus 6 ~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~--~~~~y~~~~SsT~~~~~---------------~~ 68 (317)
T cd06098 6 YLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACY--FHSKYKSSKSSTYKKNG---------------TS 68 (317)
T ss_pred cCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCcccc--ccCcCCcccCCCcccCC---------------CE
Confidence 45899999999999999999999999999999999996 675 46789999999998765 78
Q ss_pred eEEEcCCCceEEEEEEEEEEEecCCCCCceeecceEEEeEEecCCCcccccCCCCCCcceEEecCCCCCCh------HHh
Q 040132 163 YDWKYKEGSEIKGVLSSESFTFPGDKNTSLTFANVTFGCGYDNQNVSFGGYMGSDNIIAGVFGLRAGQRSI------LRQ 236 (271)
Q Consensus 163 ~~~~Y~~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~FGc~~~~~~~~f~~~~~~~~~~dGIlGLg~~~~S~------~~q 236 (271)
+.+.|++|+ +.|.+++|+|++++ ..++++.|||++...+..|. ....+||||||++..|. ..+
T Consensus 69 ~~i~Yg~G~-~~G~~~~D~v~ig~-----~~v~~~~f~~~~~~~~~~~~-----~~~~dGilGLg~~~~s~~~~~~~~~~ 137 (317)
T cd06098 69 ASIQYGTGS-ISGFFSQDSVTVGD-----LVVKNQVFIEATKEPGLTFL-----LAKFDGILGLGFQEISVGKAVPVWYN 137 (317)
T ss_pred EEEEcCCce-EEEEEEeeEEEECC-----EEECCEEEEEEEecCCcccc-----ccccceeccccccchhhcCCCCHHHH
Confidence 899999996 78999999999984 67899999999877553343 23689999999987654 346
Q ss_pred hccc---CCCcEEEEecCCCCCCCCCCceEEeCCCCC
Q 040132 237 LEPE---TNVRFSYCLRLYPTTDGSNTTYLRFGPVTE 270 (271)
Q Consensus 237 l~~~---~~~~FS~cL~~~~~~~~~~~g~l~fG~~~~ 270 (271)
|.++ ..++||+||.+..... ..|.|+||+.++
T Consensus 138 l~~qg~i~~~~FS~~L~~~~~~~--~~G~l~fGg~d~ 172 (317)
T cd06098 138 MVEQGLVKEPVFSFWLNRNPDEE--EGGELVFGGVDP 172 (317)
T ss_pred HHhcCCCCCCEEEEEEecCCCCC--CCcEEEECccCh
Confidence 6655 2578999998643221 479999999754
No 13
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=99.96 E-value=3.1e-29 Score=228.79 Aligned_cols=155 Identities=23% Similarity=0.429 Sum_probs=128.3
Q ss_pred CCCceEEEEEeecCCCceeEEEEeCCCCceeeeCCCCC----CCCCCCCCCCCCCCCCcccccCCCCCCCCCCCcCCCCc
Q 040132 86 ANTNIYITKISIGSTQFSPYLVVDTGSDDRWLQCEGCT----SCFPIKGGSFPVKESKTYRGLACDHPLCVPKLCSKGLC 161 (271)
Q Consensus 86 ~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~c~~C~----~C~~~~~~~y~p~~SsT~~~~~C~s~~C~~~~C~~~~c 161 (271)
+.+.+|+++|.||||+|++.|++||||+++||+|..|. .|. .++.|+|++|+|++... |
T Consensus 7 ~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~--~~~~y~~~~Sst~~~~~---------------~ 69 (329)
T cd05485 7 YMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACL--LHNKYDSTKSSTYKKNG---------------T 69 (329)
T ss_pred ccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCcccc--CCCeECCcCCCCeEECC---------------e
Confidence 45899999999999999999999999999999999997 453 46789999999998765 8
Q ss_pred eeEEEcCCCceEEEEEEEEEEEecCCCCCceeecceEEEeEEecCCCcccccCCCCCCcceEEecCCCCCCh------HH
Q 040132 162 SYDWKYKEGSEIKGVLSSESFTFPGDKNTSLTFANVTFGCGYDNQNVSFGGYMGSDNIIAGVFGLRAGQRSI------LR 235 (271)
Q Consensus 162 ~~~~~Y~~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~FGc~~~~~~~~f~~~~~~~~~~dGIlGLg~~~~S~------~~ 235 (271)
.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||+..+.+..|. ....+||||||++..|+ +.
T Consensus 70 ~~~i~Y~~g~-~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~~-----~~~~~GilGLg~~~~s~~~~~p~~~ 138 (329)
T cd05485 70 EFAIQYGSGS-LSGFLSTDTVSVGG-----VSVKGQTFAEAINEPGLTFV-----AAKFDGILGMGYSSISVDGVVPVFY 138 (329)
T ss_pred EEEEEECCce-EEEEEecCcEEECC-----EEECCEEEEEEEecCCcccc-----ccccceEEEcCCccccccCCCCHHH
Confidence 9999999996 79999999999984 57889999999877652332 23689999999987763 46
Q ss_pred hhccc--C-CCcEEEEecCCCCCCCCCCceEEeCCCCC
Q 040132 236 QLEPE--T-NVRFSYCLRLYPTTDGSNTTYLRFGPVTE 270 (271)
Q Consensus 236 ql~~~--~-~~~FS~cL~~~~~~~~~~~g~l~fG~~~~ 270 (271)
||.++ + .+.||+||.+..+.. ..|+|+||+.++
T Consensus 139 ~l~~qg~i~~~~FS~~l~~~~~~~--~~G~l~fGg~d~ 174 (329)
T cd05485 139 NMVNQKLVDAPVFSFYLNRDPSAK--EGGELILGGSDP 174 (329)
T ss_pred HHHhCCCCCCCEEEEEecCCCCCC--CCcEEEEcccCH
Confidence 77766 2 579999998753321 479999999753
No 14
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=99.96 E-value=4e-29 Score=227.20 Aligned_cols=154 Identities=21% Similarity=0.388 Sum_probs=126.1
Q ss_pred CCceEEEEEeecCCCceeEEEEeCCCCceeeeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCcCCCCceeEEE
Q 040132 87 NTNIYITKISIGSTQFSPYLVVDTGSDDRWLQCEGCTSCFPIKGGSFPVKESKTYRGLACDHPLCVPKLCSKGLCSYDWK 166 (271)
Q Consensus 87 ~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~c~~C~~C~~~~~~~y~p~~SsT~~~~~C~s~~C~~~~C~~~~c~~~~~ 166 (271)
.+..|+++|.||||+|++.|+|||||+++||+|..|..+....++.|+|++|+|++... |.|.+.
T Consensus 7 ~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~~~y~~~~Sst~~~~~---------------~~~~~~ 71 (320)
T cd05488 7 LNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLHSKYDSSASSTYKANG---------------TEFKIQ 71 (320)
T ss_pred CCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCcceECCCCCcceeeCC---------------CEEEEE
Confidence 47889999999999999999999999999999999974222356789999999987654 899999
Q ss_pred cCCCceEEEEEEEEEEEecCCCCCceeecceEEEeEEecCCCcccccCCCCCCcceEEecCCCCCChHH------hhccc
Q 040132 167 YKEGSEIKGVLSSESFTFPGDKNTSLTFANVTFGCGYDNQNVSFGGYMGSDNIIAGVFGLRAGQRSILR------QLEPE 240 (271)
Q Consensus 167 Y~~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~FGc~~~~~~~~f~~~~~~~~~~dGIlGLg~~~~S~~~------ql~~~ 240 (271)
|++|+ ++|.+++|+|+|++ ..++++.|||+....+..|. ....|||||||++..+..+ +|.++
T Consensus 72 y~~g~-~~G~~~~D~v~ig~-----~~~~~~~f~~a~~~~g~~~~-----~~~~dGilGLg~~~~s~~~~~~~~~~l~~q 140 (320)
T cd05488 72 YGSGS-LEGFVSQDTLSIGD-----LTIKKQDFAEATSEPGLAFA-----FGKFDGILGLAYDTISVNKIVPPFYNMINQ 140 (320)
T ss_pred ECCce-EEEEEEEeEEEECC-----EEECCEEEEEEecCCCccee-----eeeeceEEecCCccccccCCCCHHHHHHhc
Confidence 99996 79999999999984 67889999999877652232 2367999999998876543 45444
Q ss_pred ---CCCcEEEEecCCCCCCCCCCceEEeCCCCC
Q 040132 241 ---TNVRFSYCLRLYPTTDGSNTTYLRFGPVTE 270 (271)
Q Consensus 241 ---~~~~FS~cL~~~~~~~~~~~g~l~fG~~~~ 270 (271)
.+++||+||.+... ..|.|+||+.++
T Consensus 141 g~i~~~~FS~~L~~~~~----~~G~l~fGg~d~ 169 (320)
T cd05488 141 GLLDEPVFSFYLGSSEE----DGGEATFGGIDE 169 (320)
T ss_pred CCCCCCEEEEEecCCCC----CCcEEEECCcCH
Confidence 36899999998532 479999999753
No 15
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=99.96 E-value=1e-28 Score=219.85 Aligned_cols=135 Identities=33% Similarity=0.645 Sum_probs=112.3
Q ss_pred ceEEEEEeecCCCceeEEEEeCCCCceeeeCC-CCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCcCCCCceeEEEc
Q 040132 89 NIYITKISIGSTQFSPYLVVDTGSDDRWLQCE-GCTSCFPIKGGSFPVKESKTYRGLACDHPLCVPKLCSKGLCSYDWKY 167 (271)
Q Consensus 89 ~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~c~-~C~~C~~~~~~~y~p~~SsT~~~~~C~s~~C~~~~C~~~~c~~~~~Y 167 (271)
++|+++|.||||||++.|+|||||+++||+|. +|..| .|.|.+.|
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c----------------------------------~c~~~i~Y 46 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC----------------------------------QCDYEIEY 46 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC----------------------------------cCccEeEe
Confidence 47999999999999999999999999999994 67666 18899999
Q ss_pred CCCceEEEEEEEEEEEecCCCCCceeecceEEEeEEecCCCcccccCCCCCCcceEEecCCCCCChHHhhccc--CCCcE
Q 040132 168 KEGSEIKGVLSSESFTFPGDKNTSLTFANVTFGCGYDNQNVSFGGYMGSDNIIAGVFGLRAGQRSILRQLEPE--TNVRF 245 (271)
Q Consensus 168 ~~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~FGc~~~~~~~~f~~~~~~~~~~dGIlGLg~~~~S~~~ql~~~--~~~~F 245 (271)
+||+.++|.+++|+|+|+..++ ...++++.|||+..+.+ .+.. .....|||||||++++|+++||+.+ ++++|
T Consensus 47 gd~~~~~G~~~~D~v~~~~~~~-~~~~~~~~Fgc~~~~~~-~~~~---~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~F 121 (273)
T cd05475 47 ADGGSSMGVLVTDIFSLKLTNG-SRAKPRIAFGCGYDQQG-PLLN---PPPPTDGILGLGRGKISLPSQLASQGIIKNVI 121 (273)
T ss_pred CCCCceEEEEEEEEEEEeecCC-CcccCCEEEEeeeccCC-cccC---CCccCCEEEECCCCCCCHHHHHHhcCCcCceE
Confidence 9888999999999999975322 24678999999988765 2210 1346899999999999999999876 56889
Q ss_pred EEEecCCCCCCCCCCceEEeCCC
Q 040132 246 SYCLRLYPTTDGSNTTYLRFGPV 268 (271)
Q Consensus 246 S~cL~~~~~~~~~~~g~l~fG~~ 268 (271)
|+||++. .+|.|+||+.
T Consensus 122 s~~l~~~------~~g~l~~G~~ 138 (273)
T cd05475 122 GHCLSSN------GGGFLFFGDD 138 (273)
T ss_pred EEEccCC------CCeEEEECCC
Confidence 9999862 4699999964
No 16
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=99.96 E-value=1.6e-28 Score=223.84 Aligned_cols=156 Identities=20% Similarity=0.327 Sum_probs=124.3
Q ss_pred CCCceEEEEEeecCCCceeEEEEeCCCCceeeeCCCCCCC--CCCCCCCCCCCCCCcccccCCCCCCCCCCCcCCCCcee
Q 040132 86 ANTNIYITKISIGSTQFSPYLVVDTGSDDRWLQCEGCTSC--FPIKGGSFPVKESKTYRGLACDHPLCVPKLCSKGLCSY 163 (271)
Q Consensus 86 ~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~c~~C~~C--~~~~~~~y~p~~SsT~~~~~C~s~~C~~~~C~~~~c~~ 163 (271)
+.+.+|+++|+||||+|++.|++||||+++||+|..|..| ....++.|+|++|+||+... |.|
T Consensus 4 ~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~---------------~~~ 68 (326)
T cd05487 4 YLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENG---------------TEF 68 (326)
T ss_pred cCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECC---------------EEE
Confidence 4589999999999999999999999999999998888742 12357789999999998765 899
Q ss_pred EEEcCCCceEEEEEEEEEEEecCCCCCceeecceEEEeEEecCCCcccccCCCCCCcceEEecCCCCCC------hHHhh
Q 040132 164 DWKYKEGSEIKGVLSSESFTFPGDKNTSLTFANVTFGCGYDNQNVSFGGYMGSDNIIAGVFGLRAGQRS------ILRQL 237 (271)
Q Consensus 164 ~~~Y~~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~FGc~~~~~~~~f~~~~~~~~~~dGIlGLg~~~~S------~~~ql 237 (271)
.+.|++|+ ++|.+++|+|+|++ ..+ ++.|||........|. ....|||||||++..+ ++.+|
T Consensus 69 ~~~Yg~g~-~~G~~~~D~v~~g~-----~~~-~~~fg~~~~~~~~~~~-----~~~~dGilGLg~~~~s~~~~~~~~~~L 136 (326)
T cd05487 69 TIHYASGT-VKGFLSQDIVTVGG-----IPV-TQMFGEVTALPAIPFM-----LAKFDGVLGMGYPKQAIGGVTPVFDNI 136 (326)
T ss_pred EEEeCCce-EEEEEeeeEEEECC-----EEe-eEEEEEEEeccCCccc-----eeecceEEecCChhhcccCCCCHHHHH
Confidence 99999996 89999999999984 344 4789999876432232 2368999999997654 45566
Q ss_pred ccc---CCCcEEEEecCCCCCCCCCCceEEeCCCCC
Q 040132 238 EPE---TNVRFSYCLRLYPTTDGSNTTYLRFGPVTE 270 (271)
Q Consensus 238 ~~~---~~~~FS~cL~~~~~~~~~~~g~l~fG~~~~ 270 (271)
..+ ..++||+||.+..... ..|+|+||+.++
T Consensus 137 ~~qg~i~~~~FS~~L~~~~~~~--~~G~l~fGg~d~ 170 (326)
T cd05487 137 MSQGVLKEDVFSVYYSRDSSHS--LGGEIVLGGSDP 170 (326)
T ss_pred HhcCCCCCCEEEEEEeCCCCCC--CCcEEEECCcCh
Confidence 655 3689999998753221 479999999764
No 17
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=99.96 E-value=6.5e-28 Score=227.53 Aligned_cols=154 Identities=23% Similarity=0.386 Sum_probs=124.6
Q ss_pred CCCceEEEEEeecCCCceeEEEEeCCCCceeeeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCcCCCCceeEE
Q 040132 86 ANTNIYITKISIGSTQFSPYLVVDTGSDDRWLQCEGCTSCFPIKGGSFPVKESKTYRGLACDHPLCVPKLCSKGLCSYDW 165 (271)
Q Consensus 86 ~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~c~~C~~C~~~~~~~y~p~~SsT~~~~~C~s~~C~~~~C~~~~c~~~~ 165 (271)
+.+.+|+++|.||||+|++.|+|||||+++||+|..|..+....++.|+|++|+|++..+ |.|.+
T Consensus 134 ~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~~~yd~s~SsT~~~~~---------------~~~~i 198 (450)
T PTZ00013 134 VANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIKNLYDSSKSKSYEKDG---------------TKVDI 198 (450)
T ss_pred cCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccCCCccCccCcccccCC---------------cEEEE
Confidence 347899999999999999999999999999999999974333467889999999998765 89999
Q ss_pred EcCCCceEEEEEEEEEEEecCCCCCceeecceEEEeEEecCCC--cccccCCCCCCcceEEecCCCCCC------hHHhh
Q 040132 166 KYKEGSEIKGVLSSESFTFPGDKNTSLTFANVTFGCGYDNQNV--SFGGYMGSDNIIAGVFGLRAGQRS------ILRQL 237 (271)
Q Consensus 166 ~Y~~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~FGc~~~~~~~--~f~~~~~~~~~~dGIlGLg~~~~S------~~~ql 237 (271)
.|++|+ +.|.+++|+|+|++ ..++ ..|+++....+. .|. ....|||||||++.++ ++.||
T Consensus 199 ~YG~Gs-v~G~~~~Dtv~iG~-----~~~~-~~f~~~~~~~~~~~~~~-----~~~~dGIlGLg~~~~s~~~~~p~~~~L 266 (450)
T PTZ00013 199 TYGSGT-VKGFFSKDLVTLGH-----LSMP-YKFIEVTDTDDLEPIYS-----SSEFDGILGLGWKDLSIGSIDPIVVEL 266 (450)
T ss_pred EECCce-EEEEEEEEEEEECC-----EEEc-cEEEEEEecccccccee-----cccccceecccCCccccccCCCHHHHH
Confidence 999996 89999999999984 4555 578888765421 122 2368999999998764 56688
Q ss_pred ccc---CCCcEEEEecCCCCCCCCCCceEEeCCCCC
Q 040132 238 EPE---TNVRFSYCLRLYPTTDGSNTTYLRFGPVTE 270 (271)
Q Consensus 238 ~~~---~~~~FS~cL~~~~~~~~~~~g~l~fG~~~~ 270 (271)
+++ ..++||+||++... ..|.|+|||.++
T Consensus 267 ~~qg~I~~~vFS~~L~~~~~----~~G~L~fGGiD~ 298 (450)
T PTZ00013 267 KNQNKIDNALFTFYLPVHDV----HAGYLTIGGIEE 298 (450)
T ss_pred HhccCcCCcEEEEEecCCCC----CCCEEEECCcCc
Confidence 766 35789999986432 479999999864
No 18
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=99.96 E-value=1e-28 Score=222.21 Aligned_cols=128 Identities=34% Similarity=0.665 Sum_probs=111.0
Q ss_pred eEEEEEeecCCCceeEEEEeCCCCceeeeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCcCCCCceeEEEcCC
Q 040132 90 IYITKISIGSTQFSPYLVVDTGSDDRWLQCEGCTSCFPIKGGSFPVKESKTYRGLACDHPLCVPKLCSKGLCSYDWKYKE 169 (271)
Q Consensus 90 ~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~c~~C~~C~~~~~~~y~p~~SsT~~~~~C~s~~C~~~~C~~~~c~~~~~Y~~ 169 (271)
+|+++|.||||||++.|+|||||+++||+|.+| |.|.+.|++
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c--------------------------------------~~~~i~Yg~ 42 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC--------------------------------------CLYQVSYGD 42 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC--------------------------------------CeeeeEeCC
Confidence 599999999999999999999999999988755 468999999
Q ss_pred CceEEEEEEEEEEEecCCCCCceeecceEEEeEEecCCCcccccCCCCCCcceEEecCCCCCChHHhhcccCCCcEEEEe
Q 040132 170 GSEIKGVLSSESFTFPGDKNTSLTFANVTFGCGYDNQNVSFGGYMGSDNIIAGVFGLRAGQRSILRQLEPETNVRFSYCL 249 (271)
Q Consensus 170 Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~FGc~~~~~~~~f~~~~~~~~~~dGIlGLg~~~~S~~~ql~~~~~~~FS~cL 249 (271)
|+.++|.+++|+|+|++. ..++++.|||+....+ .| ...+||||||++.+|+++|+..+.+++||+||
T Consensus 43 Gs~~~G~~~~D~v~ig~~----~~~~~~~Fg~~~~~~~-~~-------~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L 110 (299)
T cd05472 43 GSYTTGDLATDTLTLGSS----DVVPGFAFGCGHDNEG-LF-------GGAAGLLGLGRGKLSLPSQTASSYGGVFSYCL 110 (299)
T ss_pred CceEEEEEEEEEEEeCCC----CccCCEEEECCccCCC-cc-------CCCCEEEECCCCcchHHHHhhHhhcCceEEEc
Confidence 988899999999999851 2678999999998876 43 26899999999999999999876779999999
Q ss_pred cCCCCCCCCCCceEEeCCCCC
Q 040132 250 RLYPTTDGSNTTYLRFGPVTE 270 (271)
Q Consensus 250 ~~~~~~~~~~~g~l~fG~~~~ 270 (271)
++.... .+|+|+||+.++
T Consensus 111 ~~~~~~---~~G~l~fGg~d~ 128 (299)
T cd05472 111 PDRSSS---SSGYLSFGAAAS 128 (299)
T ss_pred cCCCCC---CCceEEeCCccc
Confidence 875322 579999999875
No 19
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=99.95 E-value=7e-28 Score=222.50 Aligned_cols=149 Identities=21% Similarity=0.311 Sum_probs=121.0
Q ss_pred ecCCCce-eEEEEeCCCCceeeeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCC---C------------CcCCCC
Q 040132 97 IGSTQFS-PYLVVDTGSDDRWLQCEGCTSCFPIKGGSFPVKESKTYRGLACDHPLCVP---K------------LCSKGL 160 (271)
Q Consensus 97 iGtP~q~-~~l~~DTGS~~~Wv~c~~C~~C~~~~~~~y~p~~SsT~~~~~C~s~~C~~---~------------~C~~~~ 160 (271)
+|||-.+ +.|++||||+++||||.+ .+|+||+.++|+++.|+. . .|.++.
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~--------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~ 67 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA--------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNT 67 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC--------------CCcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCc
Confidence 6888887 999999999999999974 358899999999999975 1 465555
Q ss_pred ceeEEE-cCCCceEEEEEEEEEEEecCCCCCc---eeecceEEEeEEecCCCcccccCCCCCCcceEEecCCCCCChHHh
Q 040132 161 CSYDWK-YKEGSEIKGVLSSESFTFPGDKNTS---LTFANVTFGCGYDNQNVSFGGYMGSDNIIAGVFGLRAGQRSILRQ 236 (271)
Q Consensus 161 c~~~~~-Y~~Gs~~~G~~~~D~v~~~~~~~~~---~~~~~~~FGc~~~~~~~~f~~~~~~~~~~dGIlGLg~~~~S~~~q 236 (271)
|.|... |++|+.++|++++|+|+|+..++.. ..++++.|||++......+ ....|||||||++++|+++|
T Consensus 68 C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~------~~~~dGIlGLg~~~lSl~sq 141 (362)
T cd05489 68 CTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGL------PPGAQGVAGLGRSPLSLPAQ 141 (362)
T ss_pred CeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCC------ccccccccccCCCccchHHH
Confidence 988665 7899999999999999998654332 4688999999988642122 23589999999999999999
Q ss_pred hccc--CCCcEEEEecCCCCCCCCCCceEEeCCCC
Q 040132 237 LEPE--TNVRFSYCLRLYPTTDGSNTTYLRFGPVT 269 (271)
Q Consensus 237 l~~~--~~~~FS~cL~~~~~~~~~~~g~l~fG~~~ 269 (271)
|..+ .+++|||||++..+ .+|+|+||+.+
T Consensus 142 l~~~~~~~~~FS~CL~~~~~----~~g~l~fG~~~ 172 (362)
T cd05489 142 LASAFGVARKFALCLPSSPG----GPGVAIFGGGP 172 (362)
T ss_pred hhhhcCCCcceEEEeCCCCC----CCeeEEECCCc
Confidence 9876 35899999997532 47999999875
No 20
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=99.95 E-value=1.1e-26 Score=205.91 Aligned_cols=151 Identities=30% Similarity=0.551 Sum_probs=125.1
Q ss_pred EEEEEeecCCCceeEEEEeCCCCceeeeCCCCCCCCCCCCCC--CCCCCCCcccccCCCCCCCCCCCcCCCCceeEEEcC
Q 040132 91 YITKISIGSTQFSPYLVVDTGSDDRWLQCEGCTSCFPIKGGS--FPVKESKTYRGLACDHPLCVPKLCSKGLCSYDWKYK 168 (271)
Q Consensus 91 Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~c~~C~~C~~~~~~~--y~p~~SsT~~~~~C~s~~C~~~~C~~~~c~~~~~Y~ 168 (271)
|+++|.||||+|++.|++||||+++||+|..|..|..+.... |++..|+++... .|.|.+.|+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~~---------------~~~~~~~Y~ 65 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKDT---------------GCTFSITYG 65 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceeecC---------------CCEEEEEEC
Confidence 789999999999999999999999999999999886555544 677777765443 399999999
Q ss_pred CCceEEEEEEEEEEEecCCCCCceeecceEEEeEEecCCCcccccCCCCCCcceEEecCCCC------CChHHhhccc--
Q 040132 169 EGSEIKGVLSSESFTFPGDKNTSLTFANVTFGCGYDNQNVSFGGYMGSDNIIAGVFGLRAGQ------RSILRQLEPE-- 240 (271)
Q Consensus 169 ~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~FGc~~~~~~~~f~~~~~~~~~~dGIlGLg~~~------~S~~~ql~~~-- 240 (271)
+| .+.|.+++|+|+|++ ..++++.|||++...+ .+. ....+||||||+.. .+++.||.++
T Consensus 66 ~g-~~~g~~~~D~v~~~~-----~~~~~~~fg~~~~~~~-~~~-----~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~ 133 (283)
T cd05471 66 DG-SVTGGLGTDTVTIGG-----LTIPNQTFGCATSESG-DFS-----SSGFDGILGLGFPSLSVDGVPSFFDQLKSQGL 133 (283)
T ss_pred CC-eEEEEEEEeEEEECC-----EEEeceEEEEEeccCC-ccc-----ccccceEeecCCcccccccCCCHHHHHHHCCC
Confidence 98 578999999999995 4588999999998865 222 34799999999998 7899999987
Q ss_pred -CCCcEEEEecCCCCCCCCCCceEEeCCCCC
Q 040132 241 -TNVRFSYCLRLYPTTDGSNTTYLRFGPVTE 270 (271)
Q Consensus 241 -~~~~FS~cL~~~~~~~~~~~g~l~fG~~~~ 270 (271)
..++||+||.+.. ... ..|.|+||+.++
T Consensus 134 i~~~~Fs~~l~~~~-~~~-~~g~l~~Gg~d~ 162 (283)
T cd05471 134 ISSPVFSFYLGRDG-DGG-NGGELTFGGIDP 162 (283)
T ss_pred CCCCEEEEEEcCCC-CCC-CCCEEEEcccCc
Confidence 3689999999853 111 579999999764
No 21
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=99.94 E-value=3.9e-26 Score=211.05 Aligned_cols=154 Identities=20% Similarity=0.258 Sum_probs=113.0
Q ss_pred ceEEEEEeecCCCceeEEEEeCCCCceeeeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCcCCCCceeEEEcC
Q 040132 89 NIYITKISIGSTQFSPYLVVDTGSDDRWLQCEGCTSCFPIKGGSFPVKESKTYRGLACDHPLCVPKLCSKGLCSYDWKYK 168 (271)
Q Consensus 89 ~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~c~~C~~C~~~~~~~y~p~~SsT~~~~~C~s~~C~~~~C~~~~c~~~~~Y~ 168 (271)
..|+++|.||||+|++.|+|||||+++||+|.+|.. .++.|+|++|+||+..+ |.|.+.|+
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~----~~~~f~~~~SsT~~~~~---------------~~~~i~Yg 62 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPF----IHTYFHRELSSTYRDLG---------------KGVTVPYT 62 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCcc----ccccCCchhCcCcccCC---------------ceEEEEEC
Confidence 479999999999999999999999999999988743 36789999999999876 89999999
Q ss_pred CCceEEEEEEEEEEEecCCCCCceeecceEEEeEEecCCCcccccCCCCCCcceEEecCCCCCC--------hHHhhccc
Q 040132 169 EGSEIKGVLSSESFTFPGDKNTSLTFANVTFGCGYDNQNVSFGGYMGSDNIIAGVFGLRAGQRS--------ILRQLEPE 240 (271)
Q Consensus 169 ~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~FGc~~~~~~~~f~~~~~~~~~~dGIlGLg~~~~S--------~~~ql~~~ 240 (271)
+|+ ++|.+++|+|+|++.. .. ...+.|++.....+ .|.. ....|||||||++.++ +..+|.+|
T Consensus 63 ~Gs-~~G~~~~D~v~ig~~~--~~-~~~~~~~~~~~~~~-~~~~----~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q 133 (364)
T cd05473 63 QGS-WEGELGTDLVSIPKGP--NV-TFRANIAAITESEN-FFLN----GSNWEGILGLAYAELARPDSSVEPFFDSLVKQ 133 (364)
T ss_pred cce-EEEEEEEEEEEECCCC--cc-ceEEeeEEEecccc-ceec----ccccceeeeecccccccCCCCCCCHHHHHHhc
Confidence 995 6899999999998421 11 11234566655544 2221 1257999999998763 34456554
Q ss_pred --CCCcEEEEecC--CCCC---CCCCCceEEeCCCCC
Q 040132 241 --TNVRFSYCLRL--YPTT---DGSNTTYLRFGPVTE 270 (271)
Q Consensus 241 --~~~~FS~cL~~--~~~~---~~~~~g~l~fG~~~~ 270 (271)
..++||++|.. ...+ .....|+|+||+.++
T Consensus 134 ~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~ 170 (364)
T cd05473 134 TGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDP 170 (364)
T ss_pred cCCccceEEEecccccccccccccCCCcEEEeCCcCH
Confidence 45789997632 1100 001379999999753
No 22
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=99.94 E-value=7.2e-26 Score=200.55 Aligned_cols=127 Identities=39% Similarity=0.710 Sum_probs=107.6
Q ss_pred eEEEEEeecCCCceeEEEEeCCCCceeeeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCcCCCCceeEEEcCC
Q 040132 90 IYITKISIGSTQFSPYLVVDTGSDDRWLQCEGCTSCFPIKGGSFPVKESKTYRGLACDHPLCVPKLCSKGLCSYDWKYKE 169 (271)
Q Consensus 90 ~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~c~~C~~C~~~~~~~y~p~~SsT~~~~~C~s~~C~~~~C~~~~c~~~~~Y~~ 169 (271)
+|+++|+||||||++.|+|||||+++||+| |.|.+.|+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-----------------------------------------~~~~~~Y~d 39 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-----------------------------------------CSYEYSYGD 39 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC-----------------------------------------CceEeEeCC
Confidence 599999999999999999999999999986 247899999
Q ss_pred CceEEEEEEEEEEEecCCCCCceeecceEEEeEEecCCCcccccCCCCCCcceEEecCCCCCChHHhhcccCCCcEEEEe
Q 040132 170 GSEIKGVLSSESFTFPGDKNTSLTFANVTFGCGYDNQNVSFGGYMGSDNIIAGVFGLRAGQRSILRQLEPETNVRFSYCL 249 (271)
Q Consensus 170 Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~FGc~~~~~~~~f~~~~~~~~~~dGIlGLg~~~~S~~~ql~~~~~~~FS~cL 249 (271)
|+.++|.+++|+|+|++.+ ..++++.|||+....+ +. ....+||||||+...|++.||+.+- ++||+||
T Consensus 40 g~~~~G~~~~D~v~~g~~~---~~~~~~~Fg~~~~~~~--~~-----~~~~~GIlGLg~~~~s~~~ql~~~~-~~Fs~~l 108 (265)
T cd05476 40 GSSTSGVLATETFTFGDSS---VSVPNVAFGCGTDNEG--GS-----FGGADGILGLGRGPLSLVSQLGSTG-NKFSYCL 108 (265)
T ss_pred CceeeeeEEEEEEEecCCC---CccCCEEEEecccccC--Cc-----cCCCCEEEECCCCcccHHHHhhccc-CeeEEEc
Confidence 9899999999999999521 2678999999998865 21 3478999999999999999998654 7999999
Q ss_pred cCCCCCCCCCCceEEeCCCCC
Q 040132 250 RLYPTTDGSNTTYLRFGPVTE 270 (271)
Q Consensus 250 ~~~~~~~~~~~g~l~fG~~~~ 270 (271)
++..... ..|+|+||+.+.
T Consensus 109 ~~~~~~~--~~G~l~fGg~d~ 127 (265)
T cd05476 109 VPHDDTG--GSSPLILGDAAD 127 (265)
T ss_pred cCCCCCC--CCCeEEECCccc
Confidence 9743111 579999999864
No 23
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.93 E-value=3.1e-25 Score=170.48 Aligned_cols=108 Identities=27% Similarity=0.555 Sum_probs=93.6
Q ss_pred EEEeecCCCceeEEEEeCCCCceeeeCCCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCCCCCcCCCCceeEEEcCCCc
Q 040132 93 TKISIGSTQFSPYLVVDTGSDDRWLQCEGCTSCFPIKGGSF-PVKESKTYRGLACDHPLCVPKLCSKGLCSYDWKYKEGS 171 (271)
Q Consensus 93 ~~i~iGtP~q~~~l~~DTGS~~~Wv~c~~C~~C~~~~~~~y-~p~~SsT~~~~~C~s~~C~~~~C~~~~c~~~~~Y~~Gs 171 (271)
++|.||||||++.|+|||||+++||+|.+|..|..+.++.| +|++|++++... |.|.+.|++|+
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~~~---------------~~~~~~Y~~g~ 65 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSDNG---------------CTFSITYGTGS 65 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCCCC---------------cEEEEEeCCCe
Confidence 47999999999999999999999999999998876667777 999999988765 89999999995
Q ss_pred eEEEEEEEEEEEecCCCCCceeecceEEEeEEecCCCcccccCCCCCCcceEEec
Q 040132 172 EIKGVLSSESFTFPGDKNTSLTFANVTFGCGYDNQNVSFGGYMGSDNIIAGVFGL 226 (271)
Q Consensus 172 ~~~G~~~~D~v~~~~~~~~~~~~~~~~FGc~~~~~~~~f~~~~~~~~~~dGIlGL 226 (271)
+.|.+++|+|+|++ ..++++.|||++...+..+. ....+|||||
T Consensus 66 -~~g~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~~-----~~~~~GilGL 109 (109)
T cd05470 66 -LSGGLSTDTVSIGD-----IEVVGQAFGCATDEPGATFL-----PALFDGILGL 109 (109)
T ss_pred -EEEEEEEEEEEECC-----EEECCEEEEEEEecCCcccc-----ccccccccCC
Confidence 67999999999984 57899999999998772222 3478999998
No 24
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=99.92 E-value=6.7e-25 Score=197.81 Aligned_cols=151 Identities=27% Similarity=0.466 Sum_probs=124.5
Q ss_pred eEEEEEeecCCCceeEEEEeCCCCceeeeCCCCCCC-CCCCCCCCCCCCCCcccccCCCCCCCCCCCcCCCCceeEEEcC
Q 040132 90 IYITKISIGSTQFSPYLVVDTGSDDRWLQCEGCTSC-FPIKGGSFPVKESKTYRGLACDHPLCVPKLCSKGLCSYDWKYK 168 (271)
Q Consensus 90 ~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~c~~C~~C-~~~~~~~y~p~~SsT~~~~~C~s~~C~~~~C~~~~c~~~~~Y~ 168 (271)
+|+++|.||||+|++.|++||||+.+||++..|..| .......|++.+|+|++... +.+.+.|+
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~---------------~~~~~~y~ 65 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQG---------------KPFSISYG 65 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEE---------------EEEEEEET
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccce---------------eeeeeecc
Confidence 699999999999999999999999999999988876 33457789999999988775 88999999
Q ss_pred CCceEEEEEEEEEEEecCCCCCceeecceEEEeEEecCCCcccccCCCCCCcceEEecCCCC-------CChHHhhccc-
Q 040132 169 EGSEIKGVLSSESFTFPGDKNTSLTFANVTFGCGYDNQNVSFGGYMGSDNIIAGVFGLRAGQ-------RSILRQLEPE- 240 (271)
Q Consensus 169 ~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~FGc~~~~~~~~f~~~~~~~~~~dGIlGLg~~~-------~S~~~ql~~~- 240 (271)
+|+ ++|.+++|+|+|++ ..+.++.||.+....+..+. ....+||||||+.. .+++.+|.++
T Consensus 66 ~g~-~~G~~~~D~v~ig~-----~~~~~~~f~~~~~~~~~~~~-----~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g 134 (317)
T PF00026_consen 66 DGS-VSGNLVSDTVSIGG-----LTIPNQTFGLADSYSGDPFS-----PIPFDGILGLGFPSLSSSSTYPTFLDQLVQQG 134 (317)
T ss_dssp TEE-EEEEEEEEEEEETT-----EEEEEEEEEEEEEEESHHHH-----HSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTT
T ss_pred Ccc-cccccccceEeeee-----ccccccceeccccccccccc-----cccccccccccCCcccccccCCcceecchhhc
Confidence 997 99999999999994 67888999999986542222 24789999999743 4678888877
Q ss_pred --CCCcEEEEecCCCCCCCCCCceEEeCCCCC
Q 040132 241 --TNVRFSYCLRLYPTTDGSNTTYLRFGPVTE 270 (271)
Q Consensus 241 --~~~~FS~cL~~~~~~~~~~~g~l~fG~~~~ 270 (271)
..++||++|.+.. . ..|.|+||+.++
T Consensus 135 ~i~~~~fsl~l~~~~-~---~~g~l~~Gg~d~ 162 (317)
T PF00026_consen 135 LISSNVFSLYLNPSD-S---QNGSLTFGGYDP 162 (317)
T ss_dssp SSSSSEEEEEEESTT-S---SEEEEEESSEEG
T ss_pred cccccccceeeeecc-c---ccchheeecccc
Confidence 3688999999865 2 579999999654
No 25
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=99.89 E-value=1.2e-22 Score=182.03 Aligned_cols=117 Identities=22% Similarity=0.423 Sum_probs=101.2
Q ss_pred eEEEEEeecCCCceeEEEEeCCCCceeeeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCcCCCCceeEEEcCC
Q 040132 90 IYITKISIGSTQFSPYLVVDTGSDDRWLQCEGCTSCFPIKGGSFPVKESKTYRGLACDHPLCVPKLCSKGLCSYDWKYKE 169 (271)
Q Consensus 90 ~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~c~~C~~C~~~~~~~y~p~~SsT~~~~~C~s~~C~~~~C~~~~c~~~~~Y~~ 169 (271)
.|+++|.||||+|++.|++||||+++||+ .|.+.|++
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-------------------------------------------~~~~~Y~~ 38 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-------------------------------------------DFSISYGD 38 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-------------------------------------------eeEEEecc
Confidence 69999999999999999999999999997 15789999
Q ss_pred CceEEEEEEEEEEEecCCCCCceeecceEEEeEEecCCCcccccCCCCCCcceEEecCCCCC-----------ChHHhhc
Q 040132 170 GSEIKGVLSSESFTFPGDKNTSLTFANVTFGCGYDNQNVSFGGYMGSDNIIAGVFGLRAGQR-----------SILRQLE 238 (271)
Q Consensus 170 Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~FGc~~~~~~~~f~~~~~~~~~~dGIlGLg~~~~-----------S~~~ql~ 238 (271)
|+.+.|.+++|+|+|++ ..++++.|||++... ..+||||||++.. +++.||.
T Consensus 39 g~~~~G~~~~D~v~~g~-----~~~~~~~fg~~~~~~------------~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~ 101 (295)
T cd05474 39 GTSASGTWGTDTVSIGG-----ATVKNLQFAVANSTS------------SDVGVLGIGLPGNEATYGTGYTYPNFPIALK 101 (295)
T ss_pred CCcEEEEEEEEEEEECC-----eEecceEEEEEecCC------------CCcceeeECCCCCcccccCCCcCCCHHHHHH
Confidence 88899999999999984 478899999999842 4789999999886 6889998
Q ss_pred cc--C-CCcEEEEecCCCCCCCCCCceEEeCCCCC
Q 040132 239 PE--T-NVRFSYCLRLYPTTDGSNTTYLRFGPVTE 270 (271)
Q Consensus 239 ~~--~-~~~FS~cL~~~~~~~~~~~g~l~fG~~~~ 270 (271)
++ + ++.||+||.+... ..|.|+||+.++
T Consensus 102 ~~g~i~~~~Fsl~l~~~~~----~~g~l~~Gg~d~ 132 (295)
T cd05474 102 KQGLIKKNAYSLYLNDLDA----STGSILFGGVDT 132 (295)
T ss_pred HCCcccceEEEEEeCCCCC----CceeEEEeeecc
Confidence 76 3 5789999997532 479999998653
No 26
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.02 E-value=2.6e-05 Score=57.43 Aligned_cols=94 Identities=14% Similarity=0.141 Sum_probs=62.7
Q ss_pred ceEEEEEeecCCCceeEEEEeCCCCceeeeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCcCCCCceeEEEcC
Q 040132 89 NIYITKISIGSTQFSPYLVVDTGSDDRWLQCEGCTSCFPIKGGSFPVKESKTYRGLACDHPLCVPKLCSKGLCSYDWKYK 168 (271)
Q Consensus 89 ~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~c~~C~~C~~~~~~~y~p~~SsT~~~~~C~s~~C~~~~C~~~~c~~~~~Y~ 168 (271)
+.|++++.|+ .+++.+++|||++.+|+.-.....+.. .+.+ .....+...
T Consensus 1 ~~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~~----~~~~------------------------~~~~~~~~~ 50 (96)
T cd05483 1 GHFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLGL----PLTL------------------------GGKVTVQTA 50 (96)
T ss_pred CcEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcCC----CccC------------------------CCcEEEEec
Confidence 3689999999 499999999999999987542222210 0000 134566777
Q ss_pred CCceEEEEEEEEEEEecCCCCCceeecceEEEeEEecCCCcccccCCCCCCcceEEecCC
Q 040132 169 EGSEIKGVLSSESFTFPGDKNTSLTFANVTFGCGYDNQNVSFGGYMGSDNIIAGVFGLRA 228 (271)
Q Consensus 169 ~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~FGc~~~~~~~~f~~~~~~~~~~dGIlGLg~ 228 (271)
+|.........+.+++++ ..+.++.+........ ..+||||+.+
T Consensus 51 ~G~~~~~~~~~~~i~ig~-----~~~~~~~~~v~d~~~~-----------~~~gIlG~d~ 94 (96)
T cd05483 51 NGRVRAARVRLDSLQIGG-----ITLRNVPAVVLPGDAL-----------GVDGLLGMDF 94 (96)
T ss_pred CCCccceEEEcceEEECC-----cEEeccEEEEeCCccc-----------CCceEeChHH
Confidence 787666677788899984 4566666654444321 4899999864
No 27
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.02 E-value=0.059 Score=42.03 Aligned_cols=94 Identities=11% Similarity=0.127 Sum_probs=58.9
Q ss_pred CceEEEEEeecCCCceeEEEEeCCCCceeeeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCcCCCCceeEEEc
Q 040132 88 TNIYITKISIGSTQFSPYLVVDTGSDDRWLQCEGCTSCFPIKGGSFPVKESKTYRGLACDHPLCVPKLCSKGLCSYDWKY 167 (271)
Q Consensus 88 ~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~c~~C~~C~~~~~~~y~p~~SsT~~~~~C~s~~C~~~~C~~~~c~~~~~Y 167 (271)
++.|++++.|.- +++.+++|||++.+-+...--.... .++..- . -...+.=
T Consensus 9 ~g~~~v~~~InG--~~~~flVDTGAs~t~is~~~A~~Lg------l~~~~~-~--------------------~~~~~~t 59 (121)
T TIGR02281 9 DGHFYATGRVNG--RNVRFLVDTGATSVALNEEDAQRLG------LDLNRL-G--------------------YTVTVST 59 (121)
T ss_pred CCeEEEEEEECC--EEEEEEEECCCCcEEcCHHHHHHcC------CCcccC-C--------------------ceEEEEe
Confidence 789999999975 7999999999999877643111110 111110 0 1223333
Q ss_pred CCCceEEEEEEEEEEEecCCCCCceeecceEEEeEEecCCCcccccCCCCCCcceEEecC
Q 040132 168 KEGSEIKGVLSSESFTFPGDKNTSLTFANVTFGCGYDNQNVSFGGYMGSDNIIAGVFGLR 227 (271)
Q Consensus 168 ~~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~FGc~~~~~~~~f~~~~~~~~~~dGIlGLg 227 (271)
+.|......+.-|.+.++. ....++.+....... ..+|+||+.
T Consensus 60 a~G~~~~~~~~l~~l~iG~-----~~~~nv~~~v~~~~~------------~~~~LLGm~ 102 (121)
T TIGR02281 60 ANGQIKAARVTLDRVAIGG-----IVVNDVDAMVAEGGA------------LSESLLGMS 102 (121)
T ss_pred CCCcEEEEEEEeCEEEECC-----EEEeCcEEEEeCCCc------------CCceEcCHH
Confidence 4565444556778899984 677778766553221 247999986
No 28
>PF13650 Asp_protease_2: Aspartyl protease
Probab=95.88 E-value=0.1 Score=37.40 Aligned_cols=89 Identities=17% Similarity=0.140 Sum_probs=50.8
Q ss_pred EEeecCCCceeEEEEeCCCCceeeeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCcCCCCceeEEEcCCCceE
Q 040132 94 KISIGSTQFSPYLVVDTGSDDRWLQCEGCTSCFPIKGGSFPVKESKTYRGLACDHPLCVPKLCSKGLCSYDWKYKEGSEI 173 (271)
Q Consensus 94 ~i~iGtP~q~~~l~~DTGS~~~Wv~c~~C~~C~~~~~~~y~p~~SsT~~~~~C~s~~C~~~~C~~~~c~~~~~Y~~Gs~~ 173 (271)
++.|+- +++.+++|||++.+.+.-.-..... ..+.... ....+.-.+|...
T Consensus 2 ~v~vng--~~~~~liDTGa~~~~i~~~~~~~l~------~~~~~~~---------------------~~~~~~~~~g~~~ 52 (90)
T PF13650_consen 2 PVKVNG--KPVRFLIDTGASISVISRSLAKKLG------LKPRPKS---------------------VPISVSGAGGSVT 52 (90)
T ss_pred EEEECC--EEEEEEEcCCCCcEEECHHHHHHcC------CCCcCCc---------------------eeEEEEeCCCCEE
Confidence 566764 7999999999998777543221110 0111100 1233333455445
Q ss_pred EEEEEEEEEEecCCCCCceeecceEEEeEEecCCCcccccCCCCCCcceEEecCC
Q 040132 174 KGVLSSESFTFPGDKNTSLTFANVTFGCGYDNQNVSFGGYMGSDNIIAGVFGLRA 228 (271)
Q Consensus 174 ~G~~~~D~v~~~~~~~~~~~~~~~~FGc~~~~~~~~f~~~~~~~~~~dGIlGLg~ 228 (271)
......+.+++++ ..+.++.|-.... ....+||||+-+
T Consensus 53 ~~~~~~~~i~ig~-----~~~~~~~~~v~~~------------~~~~~~iLG~df 90 (90)
T PF13650_consen 53 VYRGRVDSITIGG-----ITLKNVPFLVVDL------------GDPIDGILGMDF 90 (90)
T ss_pred EEEEEEEEEEECC-----EEEEeEEEEEECC------------CCCCEEEeCCcC
Confidence 5556667888884 4555666544441 126899999753
No 29
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.63 E-value=0.68 Score=36.07 Aligned_cols=31 Identities=13% Similarity=0.197 Sum_probs=27.0
Q ss_pred CceEEEEEeecCCCceeEEEEeCCCCceeeeCC
Q 040132 88 TNIYITKISIGSTQFSPYLVVDTGSDDRWLQCE 120 (271)
Q Consensus 88 ~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~c~ 120 (271)
...+++++.|+. +++.+++|||++..++.-.
T Consensus 14 ~~~~~v~~~Ing--~~~~~LvDTGAs~s~Is~~ 44 (124)
T cd05479 14 VPMLYINVEING--VPVKAFVDSGAQMTIMSKA 44 (124)
T ss_pred eeEEEEEEEECC--EEEEEEEeCCCceEEeCHH
Confidence 678899999986 7899999999999988654
No 30
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=90.24 E-value=0.32 Score=35.54 Aligned_cols=28 Identities=14% Similarity=0.089 Sum_probs=24.1
Q ss_pred EEEEEeecCCCceeEEEEeCCCCceeeeCC
Q 040132 91 YITKISIGSTQFSPYLVVDTGSDDRWLQCE 120 (271)
Q Consensus 91 Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~c~ 120 (271)
|++++.|+. +++.+++||||+..++.-+
T Consensus 1 ~~~~~~Ing--~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVNG--KPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEECC--EEEEEEEcCCcceEEeCHH
Confidence 478888986 8999999999999998754
No 31
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=86.25 E-value=1.5 Score=30.70 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=28.9
Q ss_pred CCceEEEEEeecCCCceeEEEEeCCCCceeeeCCCC
Q 040132 87 NTNIYITKISIGSTQFSPYLVVDTGSDDRWLQCEGC 122 (271)
Q Consensus 87 ~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~c~~C 122 (271)
..+.+++.+.||. +.+.+++|||++...++..-+
T Consensus 5 ~~g~~~v~~~I~g--~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 5 DPGLMYVPVSIGG--VQVKALVDTGATHNFISESLA 38 (72)
T ss_pred cCCEEEEEEEECC--EEEEEEEeCCCcceecCHHHH
Confidence 4689999999998 999999999999887765543
No 32
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=82.56 E-value=1.9 Score=31.78 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=22.5
Q ss_pred EEEEeecCCCceeEEEEeCCCCceeeeCC
Q 040132 92 ITKISIGSTQFSPYLVVDTGSDDRWLQCE 120 (271)
Q Consensus 92 ~~~i~iGtP~q~~~l~~DTGS~~~Wv~c~ 120 (271)
+++|.|.. +++.+++||||+..-++..
T Consensus 7 ~i~v~i~g--~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 7 YITVKING--KKIKALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEEETT--EEEEEEEETTBSSEEESSG
T ss_pred eEEEeECC--EEEEEEEecCCCcceeccc
Confidence 56777776 7999999999999888754
No 33
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=71.89 E-value=16 Score=31.15 Aligned_cols=71 Identities=11% Similarity=0.099 Sum_probs=48.5
Q ss_pred CCceEEEEEeecCCCceeEEEEeCCCCceeeeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCcCCCCceeEEE
Q 040132 87 NTNIYITKISIGSTQFSPYLVVDTGSDDRWLQCEGCTSCFPIKGGSFPVKESKTYRGLACDHPLCVPKLCSKGLCSYDWK 166 (271)
Q Consensus 87 ~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~c~~C~~C~~~~~~~y~p~~SsT~~~~~C~s~~C~~~~C~~~~c~~~~~ 166 (271)
.++-|.++..|-- |++..++|||-+.+-++-+.-..- -|+.... +.++.+.
T Consensus 102 ~~GHF~a~~~VNG--k~v~fLVDTGATsVal~~~dA~Rl------Gid~~~l---------------------~y~~~v~ 152 (215)
T COG3577 102 RDGHFEANGRVNG--KKVDFLVDTGATSVALNEEDARRL------GIDLNSL---------------------DYTITVS 152 (215)
T ss_pred CCCcEEEEEEECC--EEEEEEEecCcceeecCHHHHHHh------CCCcccc---------------------CCceEEE
Confidence 5789999999965 999999999999888765432211 1333221 1345555
Q ss_pred cCCCceEEEEEEEEEEEecC
Q 040132 167 YKEGSEIKGVLSSESFTFPG 186 (271)
Q Consensus 167 Y~~Gs~~~G~~~~D~v~~~~ 186 (271)
=+.|.....-+--|.|.|++
T Consensus 153 TANG~~~AA~V~Ld~v~IG~ 172 (215)
T COG3577 153 TANGRARAAPVTLDRVQIGG 172 (215)
T ss_pred ccCCccccceEEeeeEEEcc
Confidence 57786555667789999984
No 34
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=67.25 E-value=7.3 Score=28.51 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=20.2
Q ss_pred EEeecCCCceeEEEEeCCCCceeeeCC
Q 040132 94 KISIGSTQFSPYLVVDTGSDDRWLQCE 120 (271)
Q Consensus 94 ~i~iGtP~q~~~l~~DTGS~~~Wv~c~ 120 (271)
.+.|+ .|.+.+++|||++.+-+.-.
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 35566 49999999999999988643
No 35
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=58.37 E-value=12 Score=26.85 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=16.7
Q ss_pred ceeEEEEeCCCCceeeeCC
Q 040132 102 FSPYLVVDTGSDDRWLQCE 120 (271)
Q Consensus 102 q~~~l~~DTGS~~~Wv~c~ 120 (271)
+++.+++|||++.+-+.-.
T Consensus 8 ~~~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 8 VPIVFLVDTGATHSVLKSD 26 (86)
T ss_pred EEEEEEEECCCCeEEECHH
Confidence 7899999999999988644
No 36
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=50.09 E-value=24 Score=21.38 Aligned_cols=14 Identities=29% Similarity=0.470 Sum_probs=7.6
Q ss_pred chhhHHHHHHHHHH
Q 040132 3 MKFLGIQIAVAIYI 16 (271)
Q Consensus 3 m~~~~~~~~~~l~~ 16 (271)
||++++-++..++.
T Consensus 1 Mk~l~~a~~l~lLa 14 (36)
T PF08194_consen 1 MKCLSLAFALLLLA 14 (36)
T ss_pred CceeHHHHHHHHHH
Confidence 78877733333333
No 37
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=50.05 E-value=23 Score=29.26 Aligned_cols=30 Identities=13% Similarity=0.304 Sum_probs=21.5
Q ss_pred ceEEEEEeecCCCceeEEEEeCCCCceeeeCC
Q 040132 89 NIYITKISIGSTQFSPYLVVDTGSDDRWLQCE 120 (271)
Q Consensus 89 ~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~c~ 120 (271)
..+.+++.+ -..+++++|||||....+...
T Consensus 33 ~T~~v~l~~--~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 33 KTAIVQLNC--KGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred cEEEEEEee--cCcEEEEEEeCCCccceeehh
Confidence 345555544 458999999999998777543
No 38
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=40.47 E-value=35 Score=25.69 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=19.4
Q ss_pred EEEeecCCC----ceeEEEEeCCCCcee-ee
Q 040132 93 TKISIGSTQ----FSPYLVVDTGSDDRW-LQ 118 (271)
Q Consensus 93 ~~i~iGtP~----q~~~l~~DTGS~~~W-v~ 118 (271)
+++.|..|. -++.+++|||.+..- ++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~ 32 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVP 32 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecC
Confidence 578888873 367899999998653 44
No 39
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=40.27 E-value=48 Score=25.94 Aligned_cols=37 Identities=16% Similarity=0.225 Sum_probs=24.4
Q ss_pred CceEEEEEeecCCCceeEEEEeCCCCceeeeCCCCCCCC
Q 040132 88 TNIYITKISIGSTQFSPYLVVDTGSDDRWLQCEGCTSCF 126 (271)
Q Consensus 88 ~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~c~~C~~C~ 126 (271)
...+|+++.|+. +++.+.+|||...+-+.-+-+..|+
T Consensus 22 v~mLyI~~~ing--~~vkA~VDtGAQ~tims~~~a~r~g 58 (124)
T PF09668_consen 22 VSMLYINCKING--VPVKAFVDTGAQSTIMSKSCAERCG 58 (124)
T ss_dssp ----EEEEEETT--EEEEEEEETT-SS-EEEHHHHHHTT
T ss_pred cceEEEEEEECC--EEEEEEEeCCCCccccCHHHHHHcC
Confidence 567899999987 8999999999998877644333453
No 40
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=30.02 E-value=64 Score=28.96 Aligned_cols=32 Identities=13% Similarity=0.049 Sum_probs=22.1
Q ss_pred ceEEEE---EeecCC-----CceeEEEEeCCCCceeeeCC
Q 040132 89 NIYITK---ISIGST-----QFSPYLVVDTGSDDRWLQCE 120 (271)
Q Consensus 89 ~~Y~~~---i~iGtP-----~q~~~l~~DTGS~~~Wv~c~ 120 (271)
..|.++ |.||.. .....+++|||++++++|-.
T Consensus 188 ~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~ 227 (317)
T cd06098 188 GYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTT 227 (317)
T ss_pred cEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHH
Confidence 345554 577652 23467999999999998853
No 41
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=30.00 E-value=58 Score=28.53 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=22.9
Q ss_pred ceEEEE---EeecC---CCceeEEEEeCCCCceeeeCC
Q 040132 89 NIYITK---ISIGS---TQFSPYLVVDTGSDDRWLQCE 120 (271)
Q Consensus 89 ~~Y~~~---i~iGt---P~q~~~l~~DTGS~~~Wv~c~ 120 (271)
..|.++ |+||. +.....+++|||++++.+|..
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 456654 57764 234567999999999999854
No 42
>PRK09458 pspB phage shock protein B; Provisional
Probab=26.46 E-value=67 Score=22.84 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=11.5
Q ss_pred CCchhhHHHHHHHHHHHH
Q 040132 1 MSMKFLGIQIAVAIYIYV 18 (271)
Q Consensus 1 ~~m~~~~~~~~~~l~~~~ 18 (271)
|+|-|+.+.+.++++|.+
T Consensus 1 m~~~fl~~PliiF~ifVa 18 (75)
T PRK09458 1 MSALFLAIPLTIFVLFVA 18 (75)
T ss_pred CcchHHHHhHHHHHHHHH
Confidence 777777766666655533
No 43
>PLN03146 aspartyl protease family protein; Provisional
Probab=25.24 E-value=97 Score=29.42 Aligned_cols=16 Identities=19% Similarity=0.493 Sum_probs=14.0
Q ss_pred EEEEeCCCCceeeeCC
Q 040132 105 YLVVDTGSDDRWLQCE 120 (271)
Q Consensus 105 ~l~~DTGS~~~Wv~c~ 120 (271)
.++||||+.+++++-.
T Consensus 309 ~~iiDSGTt~t~Lp~~ 324 (431)
T PLN03146 309 NIIIDSGTTLTLLPSD 324 (431)
T ss_pred cEEEeCCccceecCHH
Confidence 6899999999999754
No 44
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=24.29 E-value=59 Score=28.46 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=22.4
Q ss_pred ceEEEE---EeecC----CCceeEEEEeCCCCceeeeCC
Q 040132 89 NIYITK---ISIGS----TQFSPYLVVDTGSDDRWLQCE 120 (271)
Q Consensus 89 ~~Y~~~---i~iGt----P~q~~~l~~DTGS~~~Wv~c~ 120 (271)
..|.++ |.||. ......++||||++++++|-.
T Consensus 177 ~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~lP~~ 215 (278)
T cd06097 177 GFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILLPDA 215 (278)
T ss_pred cEEEEEEeeEEECCcceeecCCceEEeecCCchhcCCHH
Confidence 445444 45664 235678999999999999854
No 45
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=23.63 E-value=64 Score=29.07 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=22.6
Q ss_pred ceEEEE---EeecCC------CceeEEEEeCCCCceeeeCC
Q 040132 89 NIYITK---ISIGST------QFSPYLVVDTGSDDRWLQCE 120 (271)
Q Consensus 89 ~~Y~~~---i~iGtP------~q~~~l~~DTGS~~~Wv~c~ 120 (271)
..|.++ |.||.. .....+++|||++++++|..
T Consensus 208 ~~y~v~l~~i~vg~~~~~~~~~~~~~aivDSGTs~~~lp~~ 248 (326)
T cd06096 208 YYYYVKLEGLSVYGTTSNSGNTKGLGMLVDSGSTLSHFPED 248 (326)
T ss_pred ceEEEEEEEEEEcccccceecccCCCEEEeCCCCcccCCHH
Confidence 455554 567753 24567899999999999854
No 46
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=22.49 E-value=58 Score=28.04 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=24.6
Q ss_pred CceEEEE---EeecC-----CCceeEEEEeCCCCceeeeCCC
Q 040132 88 TNIYITK---ISIGS-----TQFSPYLVVDTGSDDRWLQCEG 121 (271)
Q Consensus 88 ~~~Y~~~---i~iGt-----P~q~~~l~~DTGS~~~Wv~c~~ 121 (271)
...|.+. |.||. ......++||||+..+|+|-.-
T Consensus 179 ~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~ 220 (283)
T cd05471 179 PGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSV 220 (283)
T ss_pred CCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHH
Confidence 3455554 46665 3467899999999999998653
No 47
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=22.47 E-value=64 Score=28.52 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=22.0
Q ss_pred ceEEEE---EeecCCC--------ceeEEEEeCCCCceeeeCC
Q 040132 89 NIYITK---ISIGSTQ--------FSPYLVVDTGSDDRWLQCE 120 (271)
Q Consensus 89 ~~Y~~~---i~iGtP~--------q~~~l~~DTGS~~~Wv~c~ 120 (271)
..|.++ |+||.-. ....+++|||++++++|-.
T Consensus 146 ~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~ 188 (299)
T cd05472 146 TFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPS 188 (299)
T ss_pred CeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHH
Confidence 456654 5776421 2336899999999999854
No 48
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=22.04 E-value=83 Score=20.48 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=14.1
Q ss_pred EeecCCCceeEEEEeCCCCce
Q 040132 95 ISIGSTQFSPYLVVDTGSDDR 115 (271)
Q Consensus 95 i~iGtP~q~~~l~~DTGS~~~ 115 (271)
+.++. .....++|||+...
T Consensus 3 ~~~~~--~~~~~liDtgs~~~ 21 (92)
T cd00303 3 GKING--VPVRALVDSGASVN 21 (92)
T ss_pred EEECC--EEEEEEEcCCCccc
Confidence 44544 78899999998754
No 49
>PF05585 DUF1758: Putative peptidase (DUF1758); InterPro: IPR008737 This is a family of nematode proteins of unknown function []. However, it seems likely that these proteins act as aspartic peptidases.
Probab=21.87 E-value=44 Score=26.94 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=16.1
Q ss_pred CceeEEEEeCCCCceeeeCC
Q 040132 101 QFSPYLVVDTGSDDRWLQCE 120 (271)
Q Consensus 101 ~q~~~l~~DTGS~~~Wv~c~ 120 (271)
.++..++||+||...++.-.
T Consensus 10 ~~~~~~LlDsGSq~SfIt~~ 29 (164)
T PF05585_consen 10 QVEARALLDSGSQRSFITES 29 (164)
T ss_pred EEEEEEEEecCCchhHHhHH
Confidence 35678999999999888644
No 50
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=21.66 E-value=81 Score=23.20 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=16.2
Q ss_pred ceeEEEEeCCCCceeeeCCC
Q 040132 102 FSPYLVVDTGSDDRWLQCEG 121 (271)
Q Consensus 102 q~~~l~~DTGS~~~Wv~c~~ 121 (271)
.....++|||+...-+|...
T Consensus 8 s~~~fLVDTGA~vSviP~~~ 27 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASS 27 (89)
T ss_pred CCcEEEEeCCCceEeecccc
Confidence 45678999999999888653
No 51
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=20.47 E-value=87 Score=27.42 Aligned_cols=20 Identities=15% Similarity=0.183 Sum_probs=16.5
Q ss_pred ceeEEEEeCCCCceeeeCCC
Q 040132 102 FSPYLVVDTGSDDRWLQCEG 121 (271)
Q Consensus 102 q~~~l~~DTGS~~~Wv~c~~ 121 (271)
....+++|||++.+|+|-.-
T Consensus 177 ~~~~~iiDSGt~~~~lP~~~ 196 (295)
T cd05474 177 KNLPALLDSGTTLTYLPSDI 196 (295)
T ss_pred CCccEEECCCCccEeCCHHH
Confidence 45689999999999998653
No 52
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=20.25 E-value=1.4e+02 Score=23.39 Aligned_cols=31 Identities=13% Similarity=0.389 Sum_probs=24.5
Q ss_pred CceEEEEEeecCCCceeEEEEeCCCCceeeeCC
Q 040132 88 TNIYITKISIGSTQFSPYLVVDTGSDDRWLQCE 120 (271)
Q Consensus 88 ~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~c~ 120 (271)
...-.+.+.|.+ ++..+++|+|++...+...
T Consensus 19 ~~vi~g~~~I~~--~~~~vLiDSGAThsFIs~~ 49 (135)
T PF08284_consen 19 PDVITGTFLINS--IPASVLIDSGATHSFISSS 49 (135)
T ss_pred CCeEEEEEEecc--EEEEEEEecCCCcEEccHH
Confidence 345677888887 8999999999998777543
Done!