BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040133
(1013 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 112/228 (49%), Gaps = 17/228 (7%)
Query: 182 LFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDTLNDNLGHGTFVAG 241
L AD + +GY GA VK+ I DTGI +H + + + + E D GHGT VAG
Sbjct: 10 LIKADKVQAQGYKGANVKVGIIDTGIASSHTDLKVVGGASFVSGESYNTDGNGHGTHVAG 69
Query: 242 VVAGQD--AECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPD 299
VA D LG AP+ +YA +V + S + +A +DV+N+S+GGP
Sbjct: 70 TVAALDNTTGVLGVAPNVSLYAIKVLNSSGSGSYSAIVSGIEWATQNGLDVINMSLGGPS 129
Query: 300 YLDLPFIEKIWEITANNIIMVSAIGNDG--PLYGTLNNPADQSDVIGVGGIDYNDHIASF 357
+ + + A+ I++V+A GN G T+ PA VI VG +D N + ASF
Sbjct: 130 G-STALKQAVDKAYASGIVVVAAAGNSGNSGSQNTIGYPAKYDSVIAVGAVDSNKNRASF 188
Query: 358 SSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
SS G + +V+A G + + S SL+GTS+ASP
Sbjct: 189 SSVGS------------ELEVMAPGVSVYSTYPSNTYTSLNGTSMASP 224
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 113/227 (49%), Gaps = 20/227 (8%)
Query: 185 ADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDT--LNDNLGHGTFVAGV 242
A AL +GYTG+ VK+A+ D+GI +HP N++ ++ +T D HGT VAG
Sbjct: 13 APALHSQGYTGSNVKVAVIDSGIDSSHPDL-NVRGGASFVPSETNPYQDGSSHGTHVAGT 71
Query: 243 VAGQDAE--CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDY 300
+A + LG AP +YA +V SW ++ +AI+ N+DV+N+S+GGP
Sbjct: 72 IAALNNSIGVLGVAPSASLYAVKVLDSTGSGQYSWIINGIEWAISNNMDVINMSLGGPTG 131
Query: 301 LDLPFIEKIWEITANNIIMVSAIGNDGP--LYGTLNNPADQSDVIGVGGIDYNDHIASFS 358
+ + ++ I++ +A GN+G T+ PA I VG ++ + ASFS
Sbjct: 132 -STALKTVVDKAVSSGIVVAAAAGNEGSSGSTSTVGYPAKYPSTIAVGAVNSANQRASFS 190
Query: 359 SRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
S G + DV+A G I + + +GTS+A+P
Sbjct: 191 SAGS------------ELDVMAPGVSIQSTLPGGTYGAYNGTSMATP 225
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 99.4 bits (246), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 97/183 (53%), Gaps = 8/183 (4%)
Query: 185 ADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDT--LNDNLGHGTFVAGV 242
A AL +GYTG+ VK+A+ D+GI +HP N++ ++ +T D HGT VAG
Sbjct: 13 APALHSQGYTGSNVKVAVIDSGIDSSHPDL-NVRGGASFVPSETNPYQDGSSHGTHVAGT 71
Query: 243 VAGQDAE--CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDY 300
+A + LG AP +YA +V SW ++ +AI+ N+DV+N+S+GGP
Sbjct: 72 IAALNNSIGVLGVAPSASLYAVKVLDSTGSGQYSWIINGIEWAISNNMDVINMSLGGPTG 131
Query: 301 LDLPFIEKIWEITANNIIMVSAIGNDGP--LYGTLNNPADQSDVIGVGGIDYNDHIASFS 358
+ + ++ I++ +A GN+G T+ PA I VG ++ ++ ASFS
Sbjct: 132 -STALKTVVDKAVSSGIVVAAAAGNEGSSGSTSTVGYPAKYPSTIAVGAVNSSNQRASFS 190
Query: 359 SRG 361
S G
Sbjct: 191 SVG 193
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 118/231 (51%), Gaps = 20/231 (8%)
Query: 181 SLFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDTLN--DNLGHGTF 238
S A AL +GYTG+ VK+A+ D+GI +HP + + + +T N D+ HGT
Sbjct: 9 SQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLK-VAGGASMVPSETPNFQDDNSHGTH 67
Query: 239 VAGVVAGQDAE--CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIG 296
VAG VA + LG AP + +YA +V DA SW ++ +AIA N+DV+N+S+G
Sbjct: 68 VAGTVAALNNSIGVLGVAPSSALYAVKVLGDAGSGQYSWIINGIEWAIANNMDVINMSLG 127
Query: 297 GPDYLDLPFIEKIWEITANNIIMVSAIGNDGPL--YGTLNNPADQSDVIGVGGIDYNDHI 354
GP + + A+ +++V+A GN+G T+ P VI VG +D ++
Sbjct: 128 GPSG-SAALKAAVDKAVASGVVVVAAAGNEGSTGSSSTVGYPGKYPSVIAVGAVDSSNQR 186
Query: 355 ASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
ASFSS G DV+A G I + + +GTS+ASP
Sbjct: 187 ASFSSVGPEL------------DVMAPGVSIQSTLPGNKYGAYNGTSMASP 225
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 108/227 (47%), Gaps = 20/227 (8%)
Query: 185 ADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDT--LNDNLGHGTFVAGV 242
A AL +GYTG+ VK+A+ D+GI +HP + + ++ +T DN HGT VAG
Sbjct: 13 APALHSQGYTGSNVKVAVIDSGIDSSHPDLK-VAGGASFVPSETNPFQDNNSHGTHVAGT 71
Query: 243 VAGQDAE--CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDY 300
VA D LG AP +YA +V SW ++ +AIA N+DV+N+S+GGP
Sbjct: 72 VAALDNSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPSG 131
Query: 301 LDL--PFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFS 358
++K + G G T+ PA VI VG +D ++ ASFS
Sbjct: 132 SAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPAKYPSVIAVGAVDSSNQRASFS 190
Query: 359 SRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
S G + DV+A G I + + SGTS+ASP
Sbjct: 191 SVGP------------ELDVMAPGVSIXSTLPGNKYGAYSGTSMASP 225
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 108/227 (47%), Gaps = 20/227 (8%)
Query: 185 ADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDT--LNDNLGHGTFVAGV 242
A AL +GYTG+ VK+A+ D+GI +HP + + ++ +T DN HGT VAG
Sbjct: 13 APALHSQGYTGSNVKVAVIDSGIDSSHPDLK-VAGGASFVPSETNPFQDNNSHGTHVAGT 71
Query: 243 VAGQDAE--CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDY 300
VA D LG AP +YA +V SW ++ +AIA N+DV+N+S+GGP
Sbjct: 72 VAALDNSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPSG 131
Query: 301 LDL--PFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFS 358
++K + G G T+ PA VI VG +D ++ ASFS
Sbjct: 132 SAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPAKYPSVIAVGAVDSSNQRASFS 190
Query: 359 SRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
S G + DV+A G I + + SGTS+ASP
Sbjct: 191 SVGP------------ELDVMAPGVSIXSTLPGNKYGAYSGTSMASP 225
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 108/231 (46%), Gaps = 20/231 (8%)
Query: 181 SLFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDT--LNDNLGHGTF 238
S A AL +GYTG+ VK+A+ D+GI +HP + + ++ +T DN HGT
Sbjct: 9 SQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLK-VAGGASFVPSETNPFQDNNSHGTH 67
Query: 239 VAGVVAGQDAE--CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIG 296
VAG VA D LG AP +YA +V SW ++ +AIA N+DV+N+S+G
Sbjct: 68 VAGTVAALDNSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLG 127
Query: 297 GPDYLDL--PFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHI 354
GP ++K + G G T+ PA VI VG +D ++
Sbjct: 128 GPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPAKYPSVIAVGAVDSSNQR 186
Query: 355 ASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
ASFSS G DV+A G I + + SGTS+ASP
Sbjct: 187 ASFSSVGPEL------------DVMAPGVSICSTLPGNKYGAKSGTSMASP 225
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 97/183 (53%), Gaps = 8/183 (4%)
Query: 185 ADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDT--LNDNLGHGTFVAGV 242
A AL +GYTG+ VK+A+ D+GI +HP N++ ++ +T D HGT VAG
Sbjct: 13 APALHSQGYTGSNVKVAVIDSGIDSSHPDL-NVRGGASFVPSETNPYQDGSSHGTHVAGT 71
Query: 243 VAGQDAE--CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDY 300
+A + LG +P +YA +V SW ++ +AI+ N+DV+N+S+GGP
Sbjct: 72 IAALNNSIGVLGVSPSASLYAVKVLDSTGSGQYSWIINGIEWAISNNMDVINMSLGGPTG 131
Query: 301 LDLPFIEKIWEITANNIIMVSAIGNDGP--LYGTLNNPADQSDVIGVGGIDYNDHIASFS 358
+ + ++ I++ +A GN+G T+ PA I VG ++ ++ ASFS
Sbjct: 132 -STALKTVVDKAVSSGIVVAAAAGNEGSSGSTSTVGYPAKYPSTIAVGAVNSSNQRASFS 190
Query: 359 SRG 361
S G
Sbjct: 191 SAG 193
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 106/230 (46%), Gaps = 18/230 (7%)
Query: 181 SLFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNE-DTLNDNLGHGTFV 239
S A AL +GYTG+ VK+A+ D+GI +HP + + +E + DN HGT V
Sbjct: 9 SQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQDNNSHGTHV 68
Query: 240 AGVVAGQDAE--CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGG 297
AG VA + LG AP +YA +V SW ++ +AIA N+DV+N+S+GG
Sbjct: 69 AGTVAALNNSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
Query: 298 PDYLDL--PFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIA 355
P ++K + G G T+ P VI VG +D ++ A
Sbjct: 129 PSGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPGKYPSVIAVGAVDSSNQRA 187
Query: 356 SFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
SFSS G DV+A G I + + +GTS+ASP
Sbjct: 188 SFSSVGPEL------------DVMAPGVSIQSTLPGNKYGAYNGTSMASP 225
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 106/230 (46%), Gaps = 18/230 (7%)
Query: 181 SLFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNE-DTLNDNLGHGTFV 239
S A AL +GYTG+ VK+A+ D+GI +HP + + +E + DN HGT V
Sbjct: 9 SQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQDNNSHGTHV 68
Query: 240 AGVVAGQDAE--CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGG 297
AG VA + LG AP +YA +V SW ++ +AIA N+DV+N+S+GG
Sbjct: 69 AGTVAALNNSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
Query: 298 PDYLDL--PFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIA 355
P ++K + G G T+ P VI VG +D ++ A
Sbjct: 129 PSGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPGKYPSVIAVGAVDSSNQRA 187
Query: 356 SFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
SFSS G DV+A G I + + +GTS+ASP
Sbjct: 188 SFSSVGPEL------------DVMAPGVSIQSTLPGNKYGAYNGTSMASP 225
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 105/230 (45%), Gaps = 18/230 (7%)
Query: 181 SLFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNE-DTLNDNLGHGTFV 239
S A AL +GYTG+ VK+A+ D+GI +HP + + +E + DN HGT V
Sbjct: 9 SQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQDNNSHGTHV 68
Query: 240 AGVVAGQDAE--CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGG 297
AG VA + LG AP +YA +V SW ++ +AIA N+DV+N+S+GG
Sbjct: 69 AGTVAALNNSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
Query: 298 PDYLDL--PFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIA 355
P ++K + G G T+ P VI VG +D ++ A
Sbjct: 129 PSGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPGKYPSVIAVGAVDSSNQRA 187
Query: 356 SFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
SFSS G DV+A G I + + SGT +ASP
Sbjct: 188 SFSSVGPEL------------DVMAPGVSIQSTLPGNKYGAYSGTXMASP 225
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 106/230 (46%), Gaps = 18/230 (7%)
Query: 181 SLFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNE-DTLNDNLGHGTFV 239
S A AL +GYTG+ VK+A+ D+GI +HP + + +E + DN HGT V
Sbjct: 9 SQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQDNNSHGTHV 68
Query: 240 AGVVAGQDAE--CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGG 297
AG VA + LG AP +YA +V SW ++ +AIA N+DV+N+S+GG
Sbjct: 69 AGTVAALNNSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
Query: 298 PDYLDL--PFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIA 355
P ++K + G G T+ P VI VG +D ++ A
Sbjct: 129 PSGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPGKYPSVIAVGAVDSSNQRA 187
Query: 356 SFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
SFSS G DV+A G I + + +GTS+ASP
Sbjct: 188 SFSSVGPEL------------DVMAPGVSIQSTLPGNKYGAYNGTSMASP 225
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 106/230 (46%), Gaps = 18/230 (7%)
Query: 181 SLFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNE-DTLNDNLGHGTFV 239
S A AL +GYTG+ VK+A+ D+GI +HP + + +E + DN HGT V
Sbjct: 9 SQIKAPALHSEGYTGSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQDNNSHGTHV 68
Query: 240 AGVVAGQDAE--CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGG 297
AG VA + LG AP +YA +V SW ++ +AIA N+DV+N+S+GG
Sbjct: 69 AGTVAALNNSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
Query: 298 PDYLDL--PFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIA 355
P ++K + G G T+ P VI VG +D ++ A
Sbjct: 129 PSGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPGKYPSVIAVGAVDSSNQRA 187
Query: 356 SFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
SFSS G DV+A G I + + +GTS+ASP
Sbjct: 188 SFSSVGPEL------------DVMAPGVSIQSTLPGNKYGAYNGTSMASP 225
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 107/231 (46%), Gaps = 20/231 (8%)
Query: 181 SLFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDT--LNDNLGHGTF 238
S A AL +GY G+ VK+A+ D+GI +HP + + ++ +T DN HGT
Sbjct: 9 SQIKAPALHSQGYCGSNVKVAVIDSGIDSSHPDLK-VAGGASFVPSETNPFQDNNSHGTH 67
Query: 239 VAGVVAGQDAE--CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIG 296
VAG VA + LG AP +YA +V SW ++ +AIA N+DV+N+S+G
Sbjct: 68 VAGTVAALNNSIGVLGVAPCASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLG 127
Query: 297 GPDYLDL--PFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHI 354
GP ++K + G G T+ PA VI VG +D ++
Sbjct: 128 GPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPAKYPSVIAVGAVDSSNQR 186
Query: 355 ASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
ASFSS G DV+A G I + + SGTS+ASP
Sbjct: 187 ASFSSVGPEL------------DVMAPGVSIQSTLPGNKYGAKSGTSMASP 225
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 105/227 (46%), Gaps = 20/227 (8%)
Query: 185 ADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDT--LNDNLGHGTFVAGV 242
A AL +GYTG+ VK+A+ D+GI +HP + + ++ +T DN HGT VAG
Sbjct: 13 APALHSQGYTGSNVKVAVIDSGIDSSHPDLK-VAGGASFVPSETNPFQDNNSHGTHVAGT 71
Query: 243 VAGQDAE--CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDY 300
VA + LG AP +YA +V SW ++ +AIA N+DV+N+S+GGP
Sbjct: 72 VAALNNSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPSG 131
Query: 301 LDL--PFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFS 358
++K + G G T+ P VI VG +D ++ ASFS
Sbjct: 132 SAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPGKYPSVIAVGAVDSSNQRASFS 190
Query: 359 SRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
S G DV+A G I + + SGT +ASP
Sbjct: 191 SVGPEL------------DVMAPGVSIQSTLPGNKYGAKSGTXMASP 225
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 107/231 (46%), Gaps = 20/231 (8%)
Query: 181 SLFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDT--LNDNLGHGTF 238
S A AL +GY G+ VK+A+ D+GI +HP + + ++ +T DN HGT
Sbjct: 9 SQIKAPALHSQGYCGSNVKVAVIDSGIDSSHPDLK-VAGGASFVPSETNPFQDNNSHGTH 67
Query: 239 VAGVVAGQDAE--CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIG 296
VAG VA + LG AP +YA +V SW ++ +AIA N+DV+N+S+G
Sbjct: 68 VAGTVAALNNSIGVLGVAPCASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLG 127
Query: 297 GPDYLDL--PFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHI 354
GP ++K + G G T+ PA VI VG +D ++
Sbjct: 128 GPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPAKYPSVIAVGAVDSSNQR 186
Query: 355 ASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
ASFSS G DV+A G I + + SGTS+ASP
Sbjct: 187 ASFSSVGPEL------------DVMAPGVSICSTLPGNKYGAKSGTSMASP 225
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 105/230 (45%), Gaps = 18/230 (7%)
Query: 181 SLFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNE-DTLNDNLGHGTFV 239
S A AL +GY G+ VK+A+ D+GI +HP + + +E + DN HGT V
Sbjct: 9 SQIKAPALHSQGYCGSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQDNNSHGTHV 68
Query: 240 AGVVAGQDAE--CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGG 297
AG VA + LG AP +YA +V SW ++ +AIA N+DV+N+S+GG
Sbjct: 69 AGTVAALNNSIGVLGVAPCASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
Query: 298 PDYLDL--PFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIA 355
P ++K + G G T+ PA VI VG +D ++ A
Sbjct: 129 PSGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPAKYPSVIAVGAVDSSNQRA 187
Query: 356 SFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
SFSS G DV+A G I + + SGT +ASP
Sbjct: 188 SFSSVGPEL------------DVMAPGVSIQSTLPGNKYGAYSGTXMASP 225
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 105/230 (45%), Gaps = 18/230 (7%)
Query: 181 SLFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNE-DTLNDNLGHGTFV 239
S A AL +GYTG+ VK+A+ D+GI +HP + + +E + DN HGT V
Sbjct: 9 SQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQDNNSHGTHV 68
Query: 240 AGVVAGQDAE--CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGG 297
AG VA + LG AP +YA +V SW ++ +AIA N+DV+N+S+GG
Sbjct: 69 AGTVAALNNSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
Query: 298 PDYLDL--PFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIA 355
P ++K + G G T+ P VI VG +D ++ A
Sbjct: 129 PSGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPGKYPSVIAVGAVDSSNQRA 187
Query: 356 SFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
SFSS G DV+A G I + + +GT +ASP
Sbjct: 188 SFSSVGPEL------------DVMAPGVSIQSTLPGNKYGAYNGTXMASP 225
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 105/230 (45%), Gaps = 18/230 (7%)
Query: 181 SLFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNE-DTLNDNLGHGTFV 239
S A AL +GYTG+ VK+A+ D+GI +HP + + +E + DN HGT V
Sbjct: 9 SQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQDNNSHGTHV 68
Query: 240 AGVVAGQDAE--CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGG 297
AG VA + LG AP +YA +V SW ++ +AIA N+DV+N+S+GG
Sbjct: 69 AGTVAALNNSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
Query: 298 PDYLDL--PFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIA 355
P ++K + G G T+ P VI VG +D ++ A
Sbjct: 129 PSGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPGKYPSVIAVGAVDSSNQRA 187
Query: 356 SFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
SFSS G DV+A G I + + +GT +ASP
Sbjct: 188 SFSSVGPEL------------DVMAPGVSIQSTLPGNKYGAYNGTXMASP 225
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 93.2 bits (230), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 109/224 (48%), Gaps = 20/224 (8%)
Query: 185 ADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWT-NEDTLNDNLGHGTFVAGVV 243
A A +G TG+ VK+A+ DTGI HP NI+ ++ E + D GHGT VAG +
Sbjct: 13 APAAHNRGLTGSGVKVAVLDTGI-STHPDL-NIRGGASFVPGEPSTQDGNGHGTHVAGTI 70
Query: 244 AGQDAE--CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYL 301
A D LG AP E+YA +V + S +A + V NLS+G P
Sbjct: 71 AALDNSIGVLGVAPSAELYAVKVLGASGSGAISSIAQGLEWAGNNGMHVANLSLGSPSP- 129
Query: 302 DLPFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRG 361
+ + T+ +++V+A GN+G G+++ PA ++ + VG D N++ ASFS G
Sbjct: 130 SATLEQAVNSATSRGVLVVAASGNEG--AGSIDYPARYANAMAVGATDQNNNRASFSQYG 187
Query: 362 MSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
D+VA G + + + SL+GT +A+P
Sbjct: 188 AGL------------DIVAPGVNVQSTYPGSTYASLNGTXMATP 219
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 92.8 bits (229), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 110/224 (49%), Gaps = 20/224 (8%)
Query: 185 ADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWT-NEDTLNDNLGHGTFVAGVV 243
A A +G TG+ VK+A+ DTGI HP NI+ ++ E + D GHGT VAG +
Sbjct: 13 APAAHNRGLTGSGVKVAVLDTGI-STHPDL-NIRGGASFVPGEPSTQDGNGHGTHVAGTI 70
Query: 244 AGQDAE--CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYL 301
A + LG AP+ E+YA +V + S +A + V NLS+G P
Sbjct: 71 AALNNSIGVLGVAPNAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSP- 129
Query: 302 DLPFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRG 361
+ + T+ +++V+A GN G G+++ PA ++ + VG D N++ ASFS G
Sbjct: 130 SATLEQAVNSATSRGVLVVAASGNSG--AGSISYPARYANAMAVGATDQNNNRASFSQYG 187
Query: 362 MSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
D+VA G + + + SL+GTS+A+P
Sbjct: 188 AGL------------DIVAPGVNVQSTYPGSTYASLNGTSMATP 219
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 92.8 bits (229), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 110/224 (49%), Gaps = 20/224 (8%)
Query: 185 ADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWT-NEDTLNDNLGHGTFVAGVV 243
A A +G TG+ VK+A+ DTGI HP NI+ ++ E + D GHGT VAG +
Sbjct: 13 APAAHNRGLTGSGVKVAVLDTGI-STHPDL-NIRGGASFVPGEPSTQDGNGHGTHVAGTI 70
Query: 244 AGQDAE--CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYL 301
A + LG AP+ E+YA +V + S +A + V NLS+G P
Sbjct: 71 AALNNSIGVLGVAPNAELYAVKVLGASGGGSNSSIAQGLEWAGNNGMHVANLSLGSPSP- 129
Query: 302 DLPFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRG 361
+ + T+ +++V+A GN G G+++ PA ++ + VG D N++ ASFS G
Sbjct: 130 SATLEQAVNSATSRGVLVVAASGNSG--AGSISYPARYANAMAVGATDQNNNRASFSQYG 187
Query: 362 MSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
D+VA G + + + SL+GTS+A+P
Sbjct: 188 AGL------------DIVAPGVNVQSTYPGSTYASLNGTSMATP 219
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 108/224 (48%), Gaps = 20/224 (8%)
Query: 185 ADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWT-NEDTLNDNLGHGTFVAGVV 243
A A +G TG+ VK+A+ DTGI HP NI+ ++ E + D GHGT VAG +
Sbjct: 13 APAAHNRGLTGSGVKVAVLDTGI-STHPDL-NIRGGASFVPGEPSTQDGNGHGTHVAGTI 70
Query: 244 AGQDAE--CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYL 301
A D LG AP E+YA +V + S +A + V NLS+G P
Sbjct: 71 AALDNSIGVLGVAPSAELYAVKVLGASGSGAISSIAQGLEWAGNNGMHVANLSLGSPSP- 129
Query: 302 DLPFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRG 361
+ + T+ +++V+A GN G G+++ PA ++ + VG D N++ ASFS G
Sbjct: 130 SATLEQAVNSATSRGVLVVAASGNSG--AGSISYPARYANAMAVGATDQNNNRASFSQYG 187
Query: 362 MSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
D+VA G + + + SL+GT +A+P
Sbjct: 188 AGL------------DIVAPGVNVQSTYPGSTYASLNGTXMATP 219
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 105/229 (45%), Gaps = 25/229 (10%)
Query: 181 SLFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDT--LNDNLGHGTF 238
S A AL +GYTG+ VK+A+ D+GI +HP N+ ++ +T DN HGT
Sbjct: 9 SQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDL-NVAGGASFVPSETNPFQDNNSHGTH 67
Query: 239 VAGVVAGQDAECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGP 298
VAG V L AP +YA +V SW ++ +AIA N+DV+N+S+GGP
Sbjct: 68 VAGTV-------LAVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGP 120
Query: 299 DYLDL--PFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIAS 356
++K + G G T+ P VI VG +D ++ AS
Sbjct: 121 SGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPGKYPSVIAVGAVDSSNQRAS 179
Query: 357 FSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
FSS G + DV+A G I + + SGTS+ASP
Sbjct: 180 FSSVGP------------ELDVMAPGVSICSTLPGNKYGAKSGTSMASP 216
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 109/224 (48%), Gaps = 20/224 (8%)
Query: 185 ADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWT-NEDTLNDNLGHGTFVAGVV 243
A A +G TG+ VK+A+ DTGI HP NI+ ++ E + D GHGT VAG +
Sbjct: 13 APAAHNRGLTGSGVKVAVLDTGI-STHPDL-NIRGGASFVPGEPSTQDGNGHGTHVAGTI 70
Query: 244 AGQDAE--CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYL 301
A + LG AP E+YA +V + S +A + V NLS+G P
Sbjct: 71 AALNNSIGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSP- 129
Query: 302 DLPFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRG 361
+ + T+ +++V+A GN G G+++ PA ++ + VG D N++ ASFS G
Sbjct: 130 SATLEQAVNSATSRGVLVVAASGNSG--AGSISYPARYANAMAVGATDQNNNRASFSQYG 187
Query: 362 MSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
D+VA G + + + SL+GTS+A+P
Sbjct: 188 AGL------------DIVAPGVNVQSTYPGSTYASLNGTSMATP 219
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 105/229 (45%), Gaps = 25/229 (10%)
Query: 181 SLFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDT--LNDNLGHGTF 238
S A AL +GYTG+ VK+A+ D+GI +HP N+ ++ +T DN HGT
Sbjct: 9 SQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDL-NVAGGASFVPSETNPFQDNNSHGTH 67
Query: 239 VAGVVAGQDAECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGP 298
VAG V L AP +YA +V SW ++ +AIA N+DV+N+S+GGP
Sbjct: 68 VAGTV-------LAVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGP 120
Query: 299 DYLDL--PFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIAS 356
++K + G G T+ P VI VG +D ++ AS
Sbjct: 121 SGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPGKYPSVIAVGAVDSSNQRAS 179
Query: 357 FSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
FSS G + DV+A G I + + SGTS+ASP
Sbjct: 180 FSSVGP------------ELDVMAPGVSICSTLPGNKYGAKSGTSMASP 216
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 109/224 (48%), Gaps = 20/224 (8%)
Query: 185 ADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWT-NEDTLNDNLGHGTFVAGVV 243
A A +G TG+ VK+A+ DTGI HP NI+ ++ E + D GHGT VAG +
Sbjct: 13 APAAHNRGLTGSGVKVAVLDTGI-STHPDL-NIRGGASFVPGEPSTQDGNGHGTHVAGTI 70
Query: 244 AGQDAE--CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYL 301
A + LG AP E+YA +V + S +A + V NLS+G P
Sbjct: 71 AALNNSIGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSP- 129
Query: 302 DLPFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRG 361
+ + T+ +++V+A GN G G+++ PA ++ + VG D N++ ASFS G
Sbjct: 130 SATLEQAVNSATSRGVLVVAASGNSG--AGSISYPARYANAMAVGATDQNNNRASFSQYG 187
Query: 362 MSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
D+VA G + + + SL+GTS+A+P
Sbjct: 188 AGL------------DIVAPGVNVQSTYPGSTYASLNGTSMATP 219
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 103/230 (44%), Gaps = 18/230 (7%)
Query: 181 SLFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNE-DTLNDNLGHGTFV 239
S A AL +GYTG+ VK+A+ D+GI +HP + + +E + DN HGT V
Sbjct: 9 SQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQDNNSHGTHV 68
Query: 240 AGVVAGQDAE--CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGG 297
AG VA + LG AP +YA +V SW ++ +AIA N DV+N S+GG
Sbjct: 69 AGTVAALNNSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNXDVINXSLGG 128
Query: 298 PDYLDL--PFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIA 355
P ++K + G G T+ P VI VG +D ++ A
Sbjct: 129 PSGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPGKYPSVIAVGAVDSSNQRA 187
Query: 356 SFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
SFSS G DV+A G I + + +GTS ASP
Sbjct: 188 SFSSVGPEL------------DVMAPGVSIQSTLPGNKYGAYNGTSXASP 225
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 105/229 (45%), Gaps = 25/229 (10%)
Query: 181 SLFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDT--LNDNLGHGTF 238
S A AL +GYTG+ VK+A+ D+GI +HP N+ ++ +T DN HGT
Sbjct: 9 SQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDL-NVAGGASFVPSETNPFQDNNSHGTH 67
Query: 239 VAGVVAGQDAECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGP 298
VAG V L AP +YA +V SW ++ +AIA N+DV+N+S+GGP
Sbjct: 68 VAGTV-------LAVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGP 120
Query: 299 DYLDL--PFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIAS 356
++K + G G T+ P VI VG +D ++ AS
Sbjct: 121 SGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPGKYPSVIAVGAVDSSNQRAS 179
Query: 357 FSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
FSS G DV+A G I+ + + SGT++ASP
Sbjct: 180 FSSVGPEL------------DVMAPGVSIVSTLPGNKYGAKSGTAMASP 216
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 104/228 (45%), Gaps = 17/228 (7%)
Query: 182 LFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDTLNDNLGHGTFVAG 241
L AD + +G+ GA VK+A+ DTGI+ +HP + + E D GHGT VAG
Sbjct: 11 LIKADKVQAQGFKGANVKVAVLDTGIQASHPDLNVVGGASFVAGEAYNTDGNGHGTHVAG 70
Query: 242 VVAGQD--AECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPD 299
VA D LG AP +YA +V + S + +A +DV+N+S+GG
Sbjct: 71 TVAALDNTTGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGAS 130
Query: 300 YLDL--PFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASF 357
++ + + GN G T+ PA VI VG +D N + ASF
Sbjct: 131 GSTAMKQAVDNAYARGVVVVAAAGNSGNSGST-NTIGYPAKYDSVIAVGAVDSNSNRASF 189
Query: 358 SSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
SS G + +V+A G + + + +L+GTS+ASP
Sbjct: 190 SSVG------------AELEVMAPGAGVYSTYPTNTYATLNGTSMASP 225
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 109/224 (48%), Gaps = 20/224 (8%)
Query: 185 ADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWT-NEDTLNDNLGHGTFVAGVV 243
A A +G TG+ VK+A+ DTGI HP NI+ ++ E + D GHGT VAG +
Sbjct: 13 APAAHNRGLTGSGVKVAVLDTGI-STHPDL-NIRGGASFVPGEPSTQDGNGHGTHVAGTI 70
Query: 244 AGQDAE--CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYL 301
A + LG AP+ E+YA +V + S +A + V NLS+G P
Sbjct: 71 AALNNSIGVLGVAPNAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSP- 129
Query: 302 DLPFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRG 361
+ + T+ +++V+A GN G G+++ PA ++ + VG D N++ ASFS G
Sbjct: 130 SATLEQAVNSATSRGVLVVAASGNSG--AGSISYPARYANAMAVGATDQNNNRASFSQYG 187
Query: 362 MSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
D+VA G + + + SL+GT +A+P
Sbjct: 188 AGL------------DIVAPGVNVQSTYPGSTYASLNGTXMATP 219
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 104/228 (45%), Gaps = 17/228 (7%)
Query: 182 LFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDTLNDNLGHGTFVAG 241
L AD + +G+ GA VK+A+ DTGI+ +HP + + E D GHGT VAG
Sbjct: 10 LIKADKVQAQGFKGANVKVAVLDTGIQASHPDLNVVGGASFVAGEAYNTDGNGHGTHVAG 69
Query: 242 VVAGQD--AECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPD 299
VA D LG AP +YA +V + S + +A +DV+N+S+GG
Sbjct: 70 TVAALDNTTGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGAS 129
Query: 300 YLDL--PFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASF 357
++ + + GN G T+ PA VI VG +D N + ASF
Sbjct: 130 GSTAMKQAVDNAYARGVVVVAAAGNSGNSGST-NTIGYPAKYDSVIAVGAVDSNSNRASF 188
Query: 358 SSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
SS G + +V+A G + + + +L+GTS+ASP
Sbjct: 189 SSVG------------AELEVMAPGAGVYSTYPTNTYATLNGTSMASP 224
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 104/229 (45%), Gaps = 25/229 (10%)
Query: 181 SLFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDT--LNDNLGHGTF 238
S A AL +GYTG+ VK+A+ D+GI +HP N+ ++ +T DN HGT
Sbjct: 9 SQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDL-NVAGGASFVPSETNPFQDNNSHGTH 67
Query: 239 VAGVVAGQDAECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGP 298
VAG V L AP +YA +V SW ++ +AIA N+DV+N+S+GGP
Sbjct: 68 VAGTV-------LAVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGP 120
Query: 299 DYLDL--PFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIAS 356
++K + G G T+ P VI VG +D ++ AS
Sbjct: 121 SGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPGKYPSVIAVGAVDSSNQRAS 179
Query: 357 FSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
FSS G + DV+A G I + + SGT +ASP
Sbjct: 180 FSSVGP------------ELDVMAPGVSICSTLPGNKYGAKSGTXMASP 216
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 104/228 (45%), Gaps = 17/228 (7%)
Query: 182 LFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDTLNDNLGHGTFVAG 241
L AD + +G+ GA VK+A+ DTGI+ +HP + + E D GHGT VAG
Sbjct: 10 LIKADKVQAQGFKGANVKVAVLDTGIQASHPDLNVVGGASFVAGEAYNTDGNGHGTHVAG 69
Query: 242 VVAGQD--AECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPD 299
VA D LG AP +YA +V + S + +A +DV+N+S+GG
Sbjct: 70 TVAALDNTTGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGAS 129
Query: 300 YLDL--PFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASF 357
++ + + GN G T+ PA VI VG +D N + ASF
Sbjct: 130 GSTAMKQAVDNAYARGVVVVAAAGNSGNSGST-NTIGYPAKYDSVIAVGAVDSNSNRASF 188
Query: 358 SSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
SS G + +V+A G + + + +L+GTS+ASP
Sbjct: 189 SSVG------------AELEVMAPGAGVYSTYPTNTYATLNGTSMASP 224
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 105/229 (45%), Gaps = 25/229 (10%)
Query: 181 SLFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDT--LNDNLGHGTF 238
S A AL +GYTG+ VK+A+ ++GI +HP N+ ++ +T DN HGT
Sbjct: 9 SQIKAPALHSQGYTGSNVKVAVINSGIDSSHPDL-NVAGGASFVPSETNPFQDNNSHGTH 67
Query: 239 VAGVVAGQDAECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGP 298
VAG V L AP +YA +V SW ++ +AIA N+DV+N+S+GGP
Sbjct: 68 VAGTV-------LAVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGP 120
Query: 299 DYLDL--PFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIAS 356
++K + G G T+ P VI VG +D ++ AS
Sbjct: 121 SGSAALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPGKYPSVIAVGAVDSSNQRAS 179
Query: 357 FSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
FSS G DV+A G I+ + + SGT++ASP
Sbjct: 180 FSSVGPEL------------DVMAPGVSIVSTLPGNKYGAKSGTAMASP 216
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 103/228 (45%), Gaps = 17/228 (7%)
Query: 182 LFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDTLNDNLGHGTFVAG 241
L AD + +G+ GA VK+A+ DTGI+ +HP + + E D GHGT VAG
Sbjct: 10 LIKADKVQAQGFKGANVKVAVLDTGIQASHPDLNVVGGASFVAGEAYNTDGNGHGTHVAG 69
Query: 242 VVAGQD--AECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPD 299
VA D LG AP +YA +V + S + +A +DV+N+S+GG
Sbjct: 70 TVAALDNTTGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGAS 129
Query: 300 YLDL--PFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASF 357
++ + + GN G T+ PA VI VG +D N + ASF
Sbjct: 130 GSTAMKQAVDNAYARGVVVVAAAGNSGNSGST-NTIGYPAKYDSVIAVGAVDSNSNRASF 188
Query: 358 SSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
SS G + +V+A G + + + +L+GT +ASP
Sbjct: 189 SSVG------------AELEVMAPGAGVYSTYPTNTYATLNGTXMASP 224
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 17/228 (7%)
Query: 182 LFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDTLNDNLGHGTFVAG 241
L AD + +G+ GA VK+A+ DTGI+ +HP + + E D GHGT VAG
Sbjct: 10 LIKADKVQAQGFKGANVKVAVLDTGIQASHPDLNVVGGASFVAGEAYNTDGNGHGTHVAG 69
Query: 242 VVAGQD--AECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPD 299
VA D LG AP +YA +V + S + +A +DV+N+S+GG
Sbjct: 70 TVAALDNTTGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGAS 129
Query: 300 YLDL--PFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASF 357
++ + + G+ G T+ PA VI VG +D N + ASF
Sbjct: 130 GSTAMKQAVDNAYARGVVVVAAAGNSGSSGST-NTIGYPAKYDSVIAVGAVDSNSNRASF 188
Query: 358 SSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
SS G + +V+A G + + + +L+GTS+ASP
Sbjct: 189 SSVG------------AELEVMAPGAGVYSTYPTNTYATLNGTSMASP 224
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 102/225 (45%), Gaps = 25/225 (11%)
Query: 185 ADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDT--LNDNLGHGTFVAGV 242
A AL +GYTG+ VK+A+ D+GI +HP + + ++ +T DN HGT VAG
Sbjct: 10 APALHSQGYTGSNVKVAVIDSGIDSSHPALK-VAGGASFVPSETNPFQDNNSHGTHVAGT 68
Query: 243 VAGQDAECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYLD 302
V L AP +YA +V SW ++ +AIA N+DV+N+S+GGP
Sbjct: 69 V-------LAVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPSGSA 121
Query: 303 L--PFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSR 360
++K + G G T+ P VI VG +D ++ ASFSS
Sbjct: 122 ALKAAVDKAVASGVVVVAAAGNEGTSGS-SSTVGYPGKYPSVIAVGAVDSSNQRASFSSV 180
Query: 361 GMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
G DV+A G I + + SGT +ASP
Sbjct: 181 GPEL------------DVMAPGVSIWSTLPGNKYGAKSGTXMASP 213
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 17/228 (7%)
Query: 182 LFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDTLNDNLGHGTFVAG 241
L AD + +G+ GA VK+A+ DTGI+ +HP + + E D GHGT VAG
Sbjct: 11 LIKADKVQAQGFKGANVKVAVLDTGIQASHPDLNVVGGASFVAGEAYNTDGNGHGTHVAG 70
Query: 242 VVAGQD--AECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPD 299
VA D LG AP +YA +V + S + +A +DV+N+S+GG
Sbjct: 71 TVAALDNTTGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGAS 130
Query: 300 YLDL--PFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASF 357
++ + + G+ G T+ PA VI VG +D N + ASF
Sbjct: 131 GSTAMKQAVDNAYARGVVVVAAAGNSGSSGNT-NTIGYPAKYDSVIAVGAVDSNSNRASF 189
Query: 358 SSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
SS G + +V+A G + + + +L+GTS+ASP
Sbjct: 190 SSVG------------AELEVMAPGAGVYSTYPTNTYATLNGTSMASP 225
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 17/228 (7%)
Query: 182 LFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDTLNDNLGHGTFVAG 241
L AD + +G+ GA VK+A+ DTGI+ +HP + + E D GHGT VAG
Sbjct: 10 LIKADKVQAQGFKGANVKVAVLDTGIQASHPDLNVVGGASFVAGEAYNTDGNGHGTHVAG 69
Query: 242 VVAGQD--AECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPD 299
VA D LG AP +YA +V + S + +A +DV+N+S+GG
Sbjct: 70 TVAALDNTTGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGAS 129
Query: 300 YLDL--PFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASF 357
++ + + G+ G T+ PA VI VG +D N + ASF
Sbjct: 130 GSTAMKQAVDNAYARGVVVVAAAGNSGSSGNT-NTIGYPAKYDSVIAVGAVDSNSNRASF 188
Query: 358 SSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
SS G + +V+A G + + + +L+GTS+ASP
Sbjct: 189 SSVG------------AELEVMAPGAGVYSTYPTNTYATLNGTSMASP 224
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 107/224 (47%), Gaps = 20/224 (8%)
Query: 185 ADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWT-NEDTLNDNLGHGTFVAGVV 243
A A +G TG+ VK+A+ DTGI HP NI+ ++ E + D GHGT VAG +
Sbjct: 13 APAAHNRGLTGSGVKVAVLDTGI-STHPDL-NIRGGASFVPGEPSTQDGNGHGTHVAGTI 70
Query: 244 AGQDAE--CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYL 301
A + LG AP E+YA +V S +A + V NLS+G P
Sbjct: 71 AALNNSIGVLGVAPSAELYAVKVLGADGRGAISSIAQGLEWAGNNGMHVANLSLGSPSP- 129
Query: 302 DLPFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRG 361
+ + T+ +++V+A GN G +++ PA ++ + VG D N++ ASFS G
Sbjct: 130 SATLEQAVNSATSRGVLVVAASGNSG--ASSISYPARYANAMAVGATDQNNNRASFSQYG 187
Query: 362 MSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
D+VA G + + + SL+GTS+A+P
Sbjct: 188 AGL------------DIVAPGVNVQSTYPGSTYASLNGTSMATP 219
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 84.0 bits (206), Expect = 4e-16, Method: Composition-based stats.
Identities = 74/225 (32%), Positives = 108/225 (48%), Gaps = 25/225 (11%)
Query: 185 ADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDT--LNDNLGHGTFVAGV 242
A AL +GYTG+ VK+A+ +GI +HP N+ ++ +T DN HGT VAG
Sbjct: 13 APALHSQGYTGSNVKVAVLASGIDSSHPDL-NVAGGASFVPSETNPFQDNNSHGTHVAGT 71
Query: 243 VAGQDAECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYLD 302
V L AP +YA +V SW ++ +AIA N+DV+N+S+G P
Sbjct: 72 V-------LAVAPSASLYAVKVLGADGSGQASWIINGIEWAIANNMDVINMSLGSPSG-S 123
Query: 303 LPFIEKIWEITANNIIMVSAIGNDGPLYGTLNN--PADQSDVIGVGGIDYNDHIASFSSR 360
+ + A+ +++V+A GN G + PA VI VG +D ++ A FSS
Sbjct: 124 AALKAAVDKAVASGVVVVAAAGNSGTSGSSSTVSYPAKYPSVIAVGAVDSSNQRAPFSSV 183
Query: 361 GMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
G DV+A G I + +LSGTS+ASP
Sbjct: 184 GPEL------------DVMAPGVSICSTLPGGKYGALSGTSMASP 216
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 113/239 (47%), Gaps = 32/239 (13%)
Query: 185 ADALWGKGYTGAKVKMAIFDTGIRENHPHF-RNIKERTNWT-----NEDTLNDNLGHGTF 238
A A+W GA + + DTG + +HP I N T +E +DN GHGT
Sbjct: 30 APAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTH 89
Query: 239 VAGVVAGQD--AECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAI------ATNIDV 290
VAG VA + + +G AP +++ + + W A YA+ + +
Sbjct: 90 VAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRI 149
Query: 291 LNLSIGGP-DYLDLPFIEKIWEITANNIIMVSAIGNDGPLYGTLNN---PADQSDVIGVG 346
+ +S+GGP D +L + + +NN+ +V A GN+G N PA ++VI VG
Sbjct: 150 ITMSLGGPTDSEELH--DAVKYAVSNNVSVVXAAGNEGDGREDTNEFAYPAAYNEVIAVG 207
Query: 347 GIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
+D++ ++ F++ + EI D+VA G I + + +G LSGT++A+P
Sbjct: 208 AVDFDLRLSDFTN---TNEEI---------DIVAPGVGIKSTYLDSGYAELSGTAMAAP 254
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 113/239 (47%), Gaps = 32/239 (13%)
Query: 185 ADALWGKGYTGAKVKMAIFDTGIRENHPHF-RNIKERTNWT-----NEDTLNDNLGHGTF 238
A A+W GA + + DTG + +HP I N T +E +DN GHGT
Sbjct: 30 APAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTH 89
Query: 239 VAGVVAGQD--AECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAI------ATNIDV 290
VAG VA + + +G AP +++ + + W A YA+ + +
Sbjct: 90 VAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRI 149
Query: 291 LNLSIGGP-DYLDLPFIEKIWEITANNIIMVSAIGNDGPLYGTLNN---PADQSDVIGVG 346
+ +S+GGP D +L + + +NN+ +V A GN+G N PA ++VI VG
Sbjct: 150 ITMSLGGPTDSEELH--DAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVG 207
Query: 347 GIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
+D++ ++ F++ + EI D+VA G I + + +G LSGT++A+P
Sbjct: 208 AVDFDLRLSDFTN---TNEEI---------DIVAPGVGIKSTYLDSGYAELSGTAMAAP 254
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 82.8 bits (203), Expect = 1e-15, Method: Composition-based stats.
Identities = 73/225 (32%), Positives = 108/225 (48%), Gaps = 25/225 (11%)
Query: 185 ADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDT--LNDNLGHGTFVAGV 242
A AL +GYTG+ VK+A+ +GI +HP N+ ++ +T DN HGT VAG
Sbjct: 13 APALHSQGYTGSNVKVAVLASGIDSSHPDL-NVAGGASFVPSETNPFQDNNSHGTHVAGT 71
Query: 243 VAGQDAECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYLD 302
V L AP +YA +V SW ++ +AIA N+DV+N+S+G P
Sbjct: 72 V-------LAVAPSASLYAVKVLGADGSGQASWIINGIEWAIANNMDVINMSLGSPSG-S 123
Query: 303 LPFIEKIWEITANNIIMVSAIGNDGPLYGTLNN--PADQSDVIGVGGIDYNDHIASFSSR 360
+ + A+ +++V+A GN G + PA VI VG +D ++ A FSS
Sbjct: 124 AALKAAVDKAVASGVVVVAAAGNSGTSGSSSTVSYPAKYPSVIAVGAVDSSNQRAPFSSV 183
Query: 361 GMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
G DV+A G I + +LSGT++ASP
Sbjct: 184 GPEL------------DVMAPGVSICSTLPGGKYGALSGTAMASP 216
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 113/239 (47%), Gaps = 32/239 (13%)
Query: 185 ADALWGKGYTGAKVKMAIFDTGIRENHPHF-RNIKERTNWT-----NEDTLNDNLGHGTF 238
A A+W GA + + DTG + +HP I N T +E +DN GHGT
Sbjct: 30 APAVWRASAKGAGQIIGVIDTGXQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTH 89
Query: 239 VAGVVAGQD--AECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAI------ATNIDV 290
VAG VA + + +G AP +++ + + W A YA+ + +
Sbjct: 90 VAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRI 149
Query: 291 LNLSIGGP-DYLDLPFIEKIWEITANNIIMVSAIGNDGPLYGTLNN---PADQSDVIGVG 346
+ +S+GGP D +L + + +NN+ +V A GN+G N PA ++VI VG
Sbjct: 150 ITMSLGGPTDSEELH--DAVKYAVSNNVSVVXAAGNEGDGREDTNEFAYPAAYNEVIAVG 207
Query: 347 GIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
+D++ ++ F++ + EI D+VA G I + + +G LSGT++A+P
Sbjct: 208 AVDFDLRLSDFTN---TNEEI---------DIVAPGVGIKSTYLDSGYAELSGTAMAAP 254
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 113/239 (47%), Gaps = 32/239 (13%)
Query: 185 ADALWGKGYTGAKVKMAIFDTGIRENHPHF-RNIKERTNWT-----NEDTLNDNLGHGTF 238
A A+W GA + + DTG + +HP I N T +E +DN GHGT
Sbjct: 12 APAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTH 71
Query: 239 VAGVVAGQD--AECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAI------ATNIDV 290
VAG VA + + +G AP +++ + + W A YA+ + +
Sbjct: 72 VAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRI 131
Query: 291 LNLSIGGP-DYLDLPFIEKIWEITANNIIMVSAIGNDGPLYGTLNN---PADQSDVIGVG 346
+ +S+GGP D +L + + +NN+ +V A GN+G N PA ++VI VG
Sbjct: 132 ITMSLGGPTDSEELH--DAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVG 189
Query: 347 GIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
+D++ ++ F++ + EI D+VA G I + + +G LSGT++A+P
Sbjct: 190 AVDFDLRLSDFTN---TNEEI---------DIVAPGVGIKSTYLDSGYAELSGTAMAAP 236
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 80.5 bits (197), Expect = 5e-15, Method: Composition-based stats.
Identities = 79/301 (26%), Positives = 134/301 (44%), Gaps = 25/301 (8%)
Query: 177 SQVTSLFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRN---IKERTNWTNEDTLNDNL 233
S +T++ G LW + K+ +A+ D + +NHP F + + + E N ++
Sbjct: 2 SHMTNIPGLKKLWSETRGDPKICVAVLDGIVDQNHPCFIGADLTRLPSLVSGEANANGSM 61
Query: 234 G-HGTFVAGVVAGQ-DAECLGFAPDTEIYAFRVFTDAQVSYTSWFLD-AFNYAIATNIDV 290
HGT VA ++ GQ D+ G AP VF D + + L A A+ ++
Sbjct: 62 STHGTHVASIIFGQHDSPVTGIAPQCRGLIVPVFADESLKLSQLDLSRAIEQAVNNGANI 121
Query: 291 LNLSIG---GPDYLDLPFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGG 347
+N+S G D + I NN+++++A GNDG L+ PA V+ VG
Sbjct: 122 INVSAGQLTDAGEADTWLEKAIQLCQENNVLLIAATGNDG--CECLHVPASLPTVLAVGA 179
Query: 348 IDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASPXX 407
+D FS+ W G K ++A G++I+G+K + G LSGTS A+P
Sbjct: 180 MDDQGKPVDFSN-----W----GDAYQKQGILAPGKDILGAKPNGGTIRLSGTSFATPIV 230
Query: 408 XXXXXXXXXXIPENNRKNILNPASMKQALVEGAAKLSGPNMYEQG---AGRVDLLESYEI 464
+ K +P +K AL+ A + + +Q G++++L++ E
Sbjct: 231 SGVAALLLSLQIKRGEKP--DPQKVKNALLASATPCNPKDTDDQSRCLMGKLNILDAIEH 288
Query: 465 L 465
L
Sbjct: 289 L 289
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 134/307 (43%), Gaps = 49/307 (15%)
Query: 185 ADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTN----EDTLNDNLGHGTFVA 240
A +W GY G+ + + I DTGI +HP + + W + + T D+ GHGT VA
Sbjct: 128 ATNMWNLGYDGSGITIGIIDTGIDASHPDLQG--KVIGWVDFVNGKTTPYDDNGHGTHVA 185
Query: 241 GVVAGQDAEC----LGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATN----IDVLN 292
+ AG A G AP ++ +V S ++ ++A+ I V+N
Sbjct: 186 SIAAGTGAASNGKYKGMAPGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVIN 245
Query: 293 LSIG------GPDYLDLPFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVG 346
LS+G G D L + W+ +++V A GN GP T+ +PA S VI VG
Sbjct: 246 LSLGSSQSSDGTDSLSQA-VNNAWDA---GLVVVVAAGNSGPNKYTVGSPAAASKVITVG 301
Query: 347 GIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREI---------MGSKISTGCKSL 397
+D D I FSSRG P R+KP+VVA G I MG I+ +
Sbjct: 302 AVDKYDVITDFSSRG------PTADNRLKPEVVAPGNWIIAARASGTSMGQPINDYYTAA 355
Query: 398 SGTSVASPXXXXXXXXXXXXIPENNRKNILNPASMKQALVEGAAKLSGPNMYEQ---GAG 454
GT++A+P P P +K AL+E A + P+ GAG
Sbjct: 356 PGTAMATPHVAGIAALLLQAHPS------WTPDKVKTALIE-TADIVKPDEIADIAYGAG 408
Query: 455 RVDLLES 461
RV+ ++
Sbjct: 409 RVNAYKA 415
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 118/266 (44%), Gaps = 34/266 (12%)
Query: 191 KGYTGAKVKMAIFDTGIRENHPHF--RNIKERTNWTNEDTLNDNLGHGTFVAGVVAGQDA 248
KG +G ++ A+ DTG+ HP + IK N+ D HGT VAG+ A +
Sbjct: 28 KGSSGQEI--AVIDTGVDYTHPDLDGKVIKGYDFVDNDYDPMDLNNHGTHVAGIAAAETN 85
Query: 249 ECLG---FAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYLDL-- 303
G AP+T I A R S DA YA + +V+NLS+G +
Sbjct: 86 NATGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLE 145
Query: 304 PFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRGMS 363
+ W + ++V+A GN+G T PA +VI VG +D D +ASFS+ G
Sbjct: 146 NAVNYAWNKGS---VVVAAAGNNGS--STTFEPASYENVIAVGAVDQYDRLASFSNYG-- 198
Query: 364 TWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASPXXXXXXXXXXXXIPENNR 423
TW DVVA G +I+ + +SGTS+ASP + R
Sbjct: 199 TW----------VDVVAPGVDIVSTITGNRYAYMSGTSMASP----HVAGLAALLASQGR 244
Query: 424 KNILNPASMKQALVEGAAKLSGPNMY 449
NI ++QA+ + A K+SG Y
Sbjct: 245 NNI----EIRQAIEQTADKISGTGTY 266
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 76.6 bits (187), Expect = 6e-14, Method: Composition-based stats.
Identities = 78/271 (28%), Positives = 120/271 (44%), Gaps = 26/271 (9%)
Query: 185 ADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWT-NEDTLNDNLGHGTFVAGVV 243
A A +G TG+ V++A+ DTGI HP NI+ ++ E + D GHGT VAG +
Sbjct: 13 APAAHNRGLTGSGVRVAVLDTGI-STHPDL-NIRGGASFVPGEPSTQDGNGHGTHVAGTI 70
Query: 244 AGQDAE--CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYL 301
A + LG AP E+YA +V + S +A + V +LS+G P
Sbjct: 71 AALNNSIGVLGVAPSAELYAVKVLGASGSGSYSSIAQGLEWAGNNGMHVASLSLGSPSP- 129
Query: 302 DLPFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRG 361
+ + T+ +++V+A GN G G+++ PA ++ + VG D N++ ASFS G
Sbjct: 130 SATLEQAVNSATSRGVLVVAASGNSGA--GSISYPARYANAMAVGATDQNNNRASFSQYG 187
Query: 362 MSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASPXXXXXXXXXXXXIPEN 421
D+VA G + + + SL+GTS+A+P P
Sbjct: 188 AGL------------DIVAPGVNVQSTYPGSTYASLNGTSMATPHVAGAAALVKQKNPSW 235
Query: 422 NRKNILNPASMKQALVEGAAKLSGPNMYEQG 452
+ I N L A L N+Y G
Sbjct: 236 SNVQIRN------HLKNTATSLGSTNLYGSG 260
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 75.1 bits (183), Expect = 2e-13, Method: Composition-based stats.
Identities = 77/271 (28%), Positives = 119/271 (43%), Gaps = 26/271 (9%)
Query: 185 ADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWT-NEDTLNDNLGHGTFVAGVV 243
A A +G TG+ V++A+ DTGI HP NI+ ++ E + D GHGT VAG +
Sbjct: 13 APAAHNRGLTGSGVRVAVLDTGI-STHPDL-NIRGGASFVPGEPSTQDGNGHGTHVAGTI 70
Query: 244 AGQDAE--CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYL 301
A + LG AP E+YA +V + S +A + V +LS+G P
Sbjct: 71 AALNNSIGVLGVAPSAELYAVKVLGASGSGSYSSIAQGLEWAGNNGMHVASLSLGSPSP- 129
Query: 302 DLPFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRG 361
+ + T+ +++V+A GN G G+++ PA ++ + VG D N++ ASFS G
Sbjct: 130 SATLEQAVNSATSRGVLVVAASGNSGA--GSISYPARYANAMAVGATDQNNNRASFSQYG 187
Query: 362 MSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASPXXXXXXXXXXXXIPEN 421
D+VA G + + + SL+GT +A+P P
Sbjct: 188 AGL------------DIVAPGVNVQSTYPGSTYASLNGTXMATPHVAGAAALVKQKNPSW 235
Query: 422 NRKNILNPASMKQALVEGAAKLSGPNMYEQG 452
+ I N L A L N+Y G
Sbjct: 236 SNVQIRN------HLKNTATSLGSTNLYGSG 260
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 88/316 (27%), Positives = 133/316 (42%), Gaps = 55/316 (17%)
Query: 188 LWGKGYTGAKVKMAIFDTGIREN------HPHFR-NIKERTNWTNEDTLNDNLGHGTFVA 240
L+G+G +A+ DTG+ H FR I + ND GHGT VA
Sbjct: 19 LYGQGQI-----VAVADTGLDTGRNDSSMHEAFRGKITALYALGRTNNANDTNGHGTHVA 73
Query: 241 GVVAGQDAECLGFAPDTEIYAFRVFTDAQV-------SYTSWFLDAFNYAIATNIDVLNL 293
G V G + G AP + F+ D+ + + F A++ + +
Sbjct: 74 GSVLGNGSTNKGMAPQANL-VFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGA 132
Query: 294 SIGGPDYLDLPFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGID---- 349
++ G D ++ + N++ ++ A GN+GP GT++ P + I VG +
Sbjct: 133 AVNGAYTTDSRNVDDY--VRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRP 190
Query: 350 ----YND---HIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKS------ 396
Y D H+A FSSRG P GR+KPDV+A G I+ ++ S S
Sbjct: 191 SFGSYADNINHVAQFSSRG------PTKDGRIKPDVMAPGTFILSARSSLAPDSSFWANH 244
Query: 397 ------LSGTSVASPXXXXXXXXXXXXIPENNRKNILNPASMKQALVEGAAK--LSGPNM 448
+ GTS+A+P + NR P+ +K AL+ GAA L PN
Sbjct: 245 DSKYAYMGGTSMATPIVAGNVAQLREHFVK-NRGITPKPSLLKAALIAGAADIGLGYPNG 303
Query: 449 YEQGAGRVDLLESYEI 464
QG GRV L +S +
Sbjct: 304 -NQGWGRVTLDKSLNV 318
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 70/241 (29%), Positives = 112/241 (46%), Gaps = 54/241 (22%)
Query: 198 VKMAIFDTGIRENHPHF--------RNIKERTNWTNEDTLNDNLGHGTFVAGVVAG--QD 247
+++A+ DTG+ +HP ++ + + D + N GHGT V G +A D
Sbjct: 29 IQVAVLDTGVDYDHPDLAANIAWCVSTLRGKVSTKLRDCADQN-GHGTHVIGTIAALNND 87
Query: 248 AECLGFAPDTEIYAFRV--------FTDAQVSYTSWFLDAFNYA-------IATNID--- 289
+G AP +IY+ RV ++D + L A IA + D
Sbjct: 88 IGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDA 147
Query: 290 --VLNLSIGGPDYLDLPFIEKIWEITANNIIMVSAIGNDG---PLYGTLNNPADQSDVIG 344
V+++S+GGP D + I + I++V+A GN+G P Y PA +VI
Sbjct: 148 AEVISMSLGGPAD-DSYLYDMIIQAYNAGIVIVAASGNEGAPSPSY-----PAAYPEVIA 201
Query: 345 VGGIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVAS 404
VG ID ND+IASFS+R +P+V A G +I+ + ++L GT++A+
Sbjct: 202 VGAIDSNDNIASFSNR--------------QPEVSAPGVDILSTYPDDSYETLMGTAMAT 247
Query: 405 P 405
P
Sbjct: 248 P 248
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 70/241 (29%), Positives = 112/241 (46%), Gaps = 54/241 (22%)
Query: 198 VKMAIFDTGIRENHPHF--------RNIKERTNWTNEDTLNDNLGHGTFVAGVVAG--QD 247
+++A+ DTG+ +HP ++ + + D + N GHGT V G +A D
Sbjct: 40 IQVAVLDTGVDYDHPDLAANIAWCVSTLRGKVSTKLRDCADQN-GHGTHVIGTIAALNND 98
Query: 248 AECLGFAPDTEIYAFRV--------FTDAQVSYTSWFLDAFNYA-------IATNID--- 289
+G AP +IY+ RV ++D + L A IA + D
Sbjct: 99 IGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIAQAILGPDGVADKDGDGIIAGDPDDDA 158
Query: 290 --VLNLSIGGPDYLDLPFIEKIWEITANNIIMVSAIGNDG---PLYGTLNNPADQSDVIG 344
V+++S+GGP D + I + I++V+A GN+G P Y PA +VI
Sbjct: 159 AEVISMSLGGPAD-DSYLYDMIIQAYNAGIVIVAASGNEGAPSPSY-----PAAYPEVIA 212
Query: 345 VGGIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVAS 404
VG ID ND+IASFS+R +P+V A G +I+ + ++L GT++A+
Sbjct: 213 VGAIDSNDNIASFSNR--------------QPEVSAPGVDILSTYPDDSYETLMGTAMAT 258
Query: 405 P 405
P
Sbjct: 259 P 259
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 74.7 bits (182), Expect = 3e-13, Method: Composition-based stats.
Identities = 70/241 (29%), Positives = 112/241 (46%), Gaps = 54/241 (22%)
Query: 198 VKMAIFDTGIRENHPHF--------RNIKERTNWTNEDTLNDNLGHGTFVAGVVAG--QD 247
+++A+ DTG+ +HP ++ + + D + N GHGT V G +A D
Sbjct: 31 IQVAVLDTGVDYDHPDLAANIAWCVSTLRGKVSTKLRDCADQN-GHGTHVIGTIAALNND 89
Query: 248 AECLGFAPDTEIYAFRV--------FTDAQVSYTSWFLDAFNYA-------IATNID--- 289
+G AP +IY+ RV ++D + L A IA + D
Sbjct: 90 IGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDA 149
Query: 290 --VLNLSIGGPDYLDLPFIEKIWEITANNIIMVSAIGNDG---PLYGTLNNPADQSDVIG 344
V+++S+GGP D + I + I++V+A GN+G P Y PA +VI
Sbjct: 150 AEVISMSLGGPAD-DSYLYDMIIQAYNAGIVIVAASGNEGAPSPSY-----PAAYPEVIA 203
Query: 345 VGGIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVAS 404
VG ID ND+IASFS+R +P+V A G +I+ + ++L GT++A+
Sbjct: 204 VGAIDSNDNIASFSNR--------------QPEVSAPGVDILSTYPDDSYETLMGTAMAT 249
Query: 405 P 405
P
Sbjct: 250 P 250
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 74.3 bits (181), Expect = 3e-13, Method: Composition-based stats.
Identities = 70/241 (29%), Positives = 112/241 (46%), Gaps = 54/241 (22%)
Query: 198 VKMAIFDTGIRENHPHF--------RNIKERTNWTNEDTLNDNLGHGTFVAGVVAG--QD 247
+++A+ DTG+ +HP ++ + + D + N GHGT V G +A D
Sbjct: 40 IQVAVLDTGVDYDHPDLAANIAWCVSTLRGKVSTKLRDCADQN-GHGTHVIGTIAALNND 98
Query: 248 AECLGFAPDTEIYAFRV--------FTDAQVSYTSWFLDAFNYA-------IATNID--- 289
+G AP +IY+ RV ++D + L A IA + D
Sbjct: 99 IGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDA 158
Query: 290 --VLNLSIGGPDYLDLPFIEKIWEITANNIIMVSAIGNDG---PLYGTLNNPADQSDVIG 344
V+++S+GGP D + I + I++V+A GN+G P Y PA +VI
Sbjct: 159 AEVISMSLGGPAD-DSYLYDMIIQAYNAGIVIVAASGNEGAPSPSY-----PAAYPEVIA 212
Query: 345 VGGIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVAS 404
VG ID ND+IASFS+R +P+V A G +I+ + ++L GT++A+
Sbjct: 213 VGAIDSNDNIASFSNR--------------QPEVSAPGVDILSTYPDDSYETLMGTAMAT 258
Query: 405 P 405
P
Sbjct: 259 P 259
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 112/241 (46%), Gaps = 54/241 (22%)
Query: 198 VKMAIFDTGIRENHPHF--------RNIKERTNWTNEDTLNDNLGHGTFVAGVVAG--QD 247
+++A+ DTG+ +HP ++ + + D + N GHGT V G +A D
Sbjct: 106 IQVAVLDTGVDYDHPDLAANIAWCVSTLRGKVSTKLRDCADQN-GHGTHVIGTIAALNND 164
Query: 248 AECLGFAPDTEIYAFRV--------FTDAQVSYTSWFLDAFNYA-------IATNID--- 289
+G AP +IY+ RV ++D + L A IA + D
Sbjct: 165 IGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDA 224
Query: 290 --VLNLSIGGPDYLDLPFIEKIWEITANNIIMVSAIGNDG---PLYGTLNNPADQSDVIG 344
V+++S+GGP D + I + I++V+A GN+G P Y PA +VI
Sbjct: 225 AEVISMSLGGP-ADDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSY-----PAAYPEVIA 278
Query: 345 VGGIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVAS 404
VG ID ND+IASFS+R +P+V A G +I+ + ++L GT++A+
Sbjct: 279 VGAIDSNDNIASFSNR--------------QPEVSAPGVDILSTYPDDSYETLMGTAMAT 324
Query: 405 P 405
P
Sbjct: 325 P 325
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 74.3 bits (181), Expect = 3e-13, Method: Composition-based stats.
Identities = 70/241 (29%), Positives = 111/241 (46%), Gaps = 54/241 (22%)
Query: 198 VKMAIFDTGIRENHPHF--------RNIKERTNWTNEDTLNDNLGHGTFVAGVVAG--QD 247
+++A+ DTG+ +HP ++ + + D + N GHGT V G +A D
Sbjct: 29 IQVAVLDTGVDYDHPDLAANIAWCVSTLRGKVSTKLRDCADQN-GHGTHVIGTIAALNND 87
Query: 248 AECLGFAPDTEIYAFRV--------FTDAQVSYTSWFLDAFNYA-------IATNID--- 289
+G AP +IY+ RV ++D + L A IA + D
Sbjct: 88 IGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDA 147
Query: 290 --VLNLSIGGPDYLDLPFIEKIWEITANNIIMVSAIGNDG---PLYGTLNNPADQSDVIG 344
V+++S+GGP D + I + I++V+A GN+G P Y PA +VI
Sbjct: 148 AEVISMSLGGPAD-DSYLYDMIIQAYNAGIVIVAASGNEGAPSPSY-----PAAYPEVIA 201
Query: 345 VGGIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVAS 404
VG ID ND+IASFS+R +P+V A G +I+ + ++L GT +A+
Sbjct: 202 VGAIDSNDNIASFSNR--------------QPEVSAPGVDILSTYPDDSYETLMGTCMAT 247
Query: 405 P 405
P
Sbjct: 248 P 248
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 112/241 (46%), Gaps = 54/241 (22%)
Query: 198 VKMAIFDTGIRENHPHF--------RNIKERTNWTNEDTLNDNLGHGTFVAGVVAG--QD 247
+++A+ DTG+ +HP ++ + + D + N GHGT V G +A D
Sbjct: 109 IQVAVLDTGVDYDHPDLAANIAWCVSTLRGKVSTKLRDCADQN-GHGTHVIGTIAALNND 167
Query: 248 AECLGFAPDTEIYAFRV--------FTDAQVSYTSWFLDAFNYA-------IATNID--- 289
+G AP +IY+ RV ++D + L A IA + D
Sbjct: 168 IGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDA 227
Query: 290 --VLNLSIGGPDYLDLPFIEKIWEITANNIIMVSAIGNDG---PLYGTLNNPADQSDVIG 344
V+++S+GGP D + I + I++V+A GN+G P Y PA +VI
Sbjct: 228 AEVISMSLGGP-ADDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSY-----PAAYPEVIA 281
Query: 345 VGGIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVAS 404
VG ID ND+IASFS+R +P+V A G +I+ + ++L GT++A+
Sbjct: 282 VGAIDSNDNIASFSNR--------------QPEVSAPGVDILSTYPDDSYETLMGTAMAT 327
Query: 405 P 405
P
Sbjct: 328 P 328
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 112/241 (46%), Gaps = 54/241 (22%)
Query: 198 VKMAIFDTGIRENHPHF--------RNIKERTNWTNEDTLNDNLGHGTFVAGVVAG--QD 247
+++A+ DTG+ +HP ++ + + D + N GHGT V G +A D
Sbjct: 109 IQVAVLDTGVDYDHPDLAANIAWCVSTLRGKVSTKLRDCADQN-GHGTHVIGTIAALNND 167
Query: 248 AECLGFAPDTEIYAFRV--------FTDAQVSYTSWFLDAFNYA-------IATNID--- 289
+G AP +IY+ RV ++D + L A IA + D
Sbjct: 168 IGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDADA 227
Query: 290 --VLNLSIGGPDYLDLPFIEKIWEITANNIIMVSAIGNDG---PLYGTLNNPADQSDVIG 344
V+++S+GGP D + I + I++V+A GN+G P Y PA +VI
Sbjct: 228 AEVISMSLGGP-ADDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSY-----PAAYPEVIA 281
Query: 345 VGGIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVAS 404
VG ID ND+IASFS+R +P+V A G +I+ + ++L GT++A+
Sbjct: 282 VGAIDSNDNIASFSNR--------------QPEVSAPGVDILSTYPDDSYETLMGTAMAT 327
Query: 405 P 405
P
Sbjct: 328 P 328
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 112/241 (46%), Gaps = 54/241 (22%)
Query: 198 VKMAIFDTGIRENHPHF--------RNIKERTNWTNEDTLNDNLGHGTFVAGVVAG--QD 247
+++A+ DTG+ +HP ++ + + D + N GHGT V G +A D
Sbjct: 109 IQVAVLDTGVDYDHPDLAANIAWCVSTLRGKVSTKLRDCADQN-GHGTHVIGTIAALNND 167
Query: 248 AECLGFAPDTEIYAFRV--------FTDAQVSYTSWFLDAFNYA-------IATNID--- 289
+G AP +IY+ RV ++D + L A IA + D
Sbjct: 168 IGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDAA 227
Query: 290 --VLNLSIGGPDYLDLPFIEKIWEITANNIIMVSAIGNDG---PLYGTLNNPADQSDVIG 344
V+++S+GGP D + I + I++V+A GN+G P Y PA +VI
Sbjct: 228 AEVISMSLGGP-ADDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSY-----PAAYPEVIA 281
Query: 345 VGGIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVAS 404
VG ID ND+IASFS+R +P+V A G +I+ + ++L GT++A+
Sbjct: 282 VGAIDSNDNIASFSNR--------------QPEVSAPGVDILSTYPDDSYETLMGTAMAT 327
Query: 405 P 405
P
Sbjct: 328 P 328
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 112/241 (46%), Gaps = 54/241 (22%)
Query: 198 VKMAIFDTGIRENHPHF--------RNIKERTNWTNEDTLNDNLGHGTFVAGVVAG--QD 247
+++A+ DTG+ +HP ++ + + D + N GHGT V G +A D
Sbjct: 109 IQVAVLDTGVDYDHPDLAANIAWCVSTLRGKVSTKLRDCADQN-GHGTHVIGTIAALNND 167
Query: 248 AECLGFAPDTEIYAFRV--------FTDAQVSYTSWFLDAFNYA-------IATNID--- 289
+G AP +IY+ RV ++D + L A IA + D
Sbjct: 168 IGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDA 227
Query: 290 --VLNLSIGGPDYLDLPFIEKIWEITANNIIMVSAIGNDG---PLYGTLNNPADQSDVIG 344
V+++S+GGP D + I + I++V+A GN+G P Y PA +VI
Sbjct: 228 AEVISMSLGGP-ADDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSY-----PAAYPEVIA 281
Query: 345 VGGIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVAS 404
VG ID ND+IASFS+R +P+V A G +I+ + ++L GT++A+
Sbjct: 282 VGAIDSNDNIASFSNR--------------QPEVSAPGVDILSTYPDDSYETLMGTAMAT 327
Query: 405 P 405
P
Sbjct: 328 P 328
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 74.3 bits (181), Expect = 3e-13, Method: Composition-based stats.
Identities = 70/241 (29%), Positives = 111/241 (46%), Gaps = 54/241 (22%)
Query: 198 VKMAIFDTGIRENHPHF--------RNIKERTNWTNEDTLNDNLGHGTFVAGVVAG--QD 247
+++A+ DTG+ +HP ++ + + D + N GHGT V G +A D
Sbjct: 29 IQVAVLDTGVDYDHPDLAANIAWCVSTLRGKVSTKLRDCADQN-GHGTHVIGTIAALNND 87
Query: 248 AECLGFAPDTEIYAFRV--------FTDAQVSYTSWFLDAFNYA-------IATNID--- 289
+G AP +IY+ RV ++D + L A IA + D
Sbjct: 88 IGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDA 147
Query: 290 --VLNLSIGGPDYLDLPFIEKIWEITANNIIMVSAIGNDG---PLYGTLNNPADQSDVIG 344
V+++S+GGP D + I + I++V+A GN+G P Y PA +VI
Sbjct: 148 AEVISMSLGGPAD-DSYLYDMIIQAYNAGIVIVAASGNEGAPSPSY-----PAAYPEVIA 201
Query: 345 VGGIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVAS 404
VG ID ND+IASFS+R +P+V A G +I+ + ++L GT +A+
Sbjct: 202 VGAIDSNDNIASFSNR--------------QPEVSAPGVDILSTYPDDSYETLMGTXMAT 247
Query: 405 P 405
P
Sbjct: 248 P 248
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 88/316 (27%), Positives = 131/316 (41%), Gaps = 55/316 (17%)
Query: 188 LWGKGYTGAKVKMAIFDTGIREN------HPHFR-NIKERTNWTNEDTLNDNLGHGTFVA 240
L+G+G +A+ DTG+ H FR I + ND GHGT VA
Sbjct: 19 LYGQGQI-----VAVADTGLDTGRNDSSMHEAFRGKITALYALGRTNNANDTNGHGTHVA 73
Query: 241 GVVAGQDAECLGFAPDTEIYAFRVFTDAQV-------SYTSWFLDAFNYAIATNIDVLNL 293
G V G + G AP + F+ D+ + + F A++ + +
Sbjct: 74 GSVLGNGSTNKGMAPQANL-VFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGA 132
Query: 294 SIGGPDYLDLPFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGID---- 349
++ G D ++ + N++ ++ A GN+GP GT++ P + I VG +
Sbjct: 133 AVNGAYTTDSRNVDDY--VRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRP 190
Query: 350 ----YND---HIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKS------ 396
Y D H+A FSSRG P GR+KPDV+A G I+ ++ S S
Sbjct: 191 SFGSYADNINHVAQFSSRG------PTKDGRIKPDVMAPGTFILSARSSLAPDSSFWANH 244
Query: 397 ------LSGTSVASPXXXXXXXXXXXXIPENNRKNILNPASMKQALVEGAAK--LSGPNM 448
GTS A+P + NR P+ +K AL+ GAA L PN
Sbjct: 245 DSKYAYXGGTSXATPIVAGNVAQLREHFVK-NRGITPKPSLLKAALIAGAADIGLGYPNG 303
Query: 449 YEQGAGRVDLLESYEI 464
QG GRV L +S +
Sbjct: 304 -NQGWGRVTLDKSLNV 318
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 94/219 (42%), Gaps = 26/219 (11%)
Query: 195 GAKVKMAIFDTGIRENHPHFRNIKERTNWT---NEDTLNDNLGHGTFVAGVVAG---QDA 248
G+ K+AI DTG++ NHP K W N+ T + GHGT AG+ A
Sbjct: 29 GSGAKIAIVDTGVQSNHPDLAG-KVVGGWDFVDNDSTPQNGNGHGTHCAGIAAAVTNNST 87
Query: 249 ECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGP--DYLDLPFI 306
G AP I A RV ++ + + YA V++LS+GG + +
Sbjct: 88 GIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTVGNSGLQQAV 147
Query: 307 EKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRGMSTWE 366
W + + GN P Y PA S+ I V D ND+ +SFS+ G +W
Sbjct: 148 NYAWNKGSVVVAAAGNAGNTAPNY-----PAYYSNAIAVASTDQNDNKSSFSTYG--SWV 200
Query: 367 IPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
DV A G I + ++ SLSGTS+A+P
Sbjct: 201 ----------DVAAPGSSIYSTYPTSTYASLSGTSMATP 229
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 94/219 (42%), Gaps = 26/219 (11%)
Query: 195 GAKVKMAIFDTGIRENHPHFRNIKERTNWT---NEDTLNDNLGHGTFVAGVVAG---QDA 248
G+ K+AI DTG++ NHP K W N+ T + GHGT AG+ A
Sbjct: 29 GSGAKIAIVDTGVQSNHPDLAG-KVVGGWDFVDNDSTPQNGNGHGTHCAGIAAAVTNNST 87
Query: 249 ECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGP--DYLDLPFI 306
G AP I A RV ++ + + YA V++LS+GG + +
Sbjct: 88 GIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTVGNSGLQQAV 147
Query: 307 EKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRGMSTWE 366
W + + GN P Y PA S+ I V D ND+ +SFS+
Sbjct: 148 NYAWNKGSVVVAAAGNAGNTAPNY-----PAYYSNAIAVASTDQNDNKSSFST------- 195
Query: 367 IPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
YG V DV A G I + ++ SLSGTS+A+P
Sbjct: 196 ----YGSVV-DVAAPGSWIYSTYPTSTYASLSGTSMATP 229
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 108/231 (46%), Gaps = 21/231 (9%)
Query: 195 GAKVKMAIFDTGIRENHPHF-RNIKERTNWTNEDT-----LNDNLGHGTFVAGVV---AG 245
G+ + +A+ DTG+ +HP N+++ ++T T D GHGT VAG G
Sbjct: 25 GSGINIAVLDTGVNTSHPDLVNNVEQCKDFTGATTPINNSCTDRNGHGTHVAGTALADGG 84
Query: 246 QD-AECLGFAPDTEIYAFRVFTDAQVSYT----SWFLDAFNYAIATNID-VLNLSIGGPD 299
D A G APD +++A++V D+ Y+ + A + A AT ++++S+G
Sbjct: 85 SDQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSA 144
Query: 300 YLDLPFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDH-----I 354
L + + +++V+A GN G GT+ P + I V ++ +
Sbjct: 145 NNSL-ISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNGTYRV 203
Query: 355 ASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
A +SSRG + + ++ A G + + + G ++SGTS+A+P
Sbjct: 204 ADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNGGYNTISGTSMATP 254
>pdb|4H6V|A Chain A, Structure Of Patellamide Maturation Protease Pata
Length = 306
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 80/299 (26%), Positives = 131/299 (43%), Gaps = 33/299 (11%)
Query: 198 VKMAIFDTGIRENHPHFRNIKERTNWTNEDTLNDNLG----HGTFVAGVVAGQ-DAECLG 252
+++AI D + HP F+ T T + G HGT VA ++ GQ + G
Sbjct: 20 IRVAILDGPVDIAHPCFQGADLTVLPTLAPTAARSDGFMSAHGTHVASIIFGQPETSVPG 79
Query: 253 FAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYLDLPFIEKIWE- 311
AP +F+D + T L A A N ++I G + D + E
Sbjct: 80 IAPQCRGLIVPIFSDDRRRITQLDL-ARGIERAVNAGAHIINISGGELTDFGEADGWLEN 138
Query: 312 ----ITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRGMSTWEI 367
NN+++V+A GN+G L+ PA V+ VG +D + H FS+ G ST+E
Sbjct: 139 AVSLCRQNNVLLVAAAGNNG--CDCLHVPAALPAVLAVGAMDDHGHPLDFSNWG-STYE- 194
Query: 368 PHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASPXXXXXXXXXXXXIPENNRKNIL 427
+ ++A G +I+G+K G + LSGTS A+P + R
Sbjct: 195 -------QQGILAPGEDILGAKPGGGTERLSGTSFATPIVSGVAALLLSE--QVRRGETP 245
Query: 428 NPASMKQALVEGAAKLSGPNMYEQG----AGRVDLLESYEILK----NYQPRASIFPSV 478
+P ++Q L++ A + EQ AGR+++ ++ +LK + + + FPSV
Sbjct: 246 DPQKVRQLLLQSALPCDD-DAPEQARRCLAGRLNVSGAFTLLKGGNMSEELATASFPSV 303
>pdb|3ZXX|A Chain A, Structure Of Self-cleaved Protease Domain Of Pata
Length = 307
Score = 64.7 bits (156), Expect = 3e-10, Method: Composition-based stats.
Identities = 76/283 (26%), Positives = 124/283 (43%), Gaps = 29/283 (10%)
Query: 198 VKMAIFDTGIRENHPHFRNIKERTNWTNEDTLNDNLG----HGTFVAGVVAGQ-DAECLG 252
+++AI D + HP F+ T T + G HGT VA ++ GQ + G
Sbjct: 29 IRVAILDGPVDIAHPCFQGADLTVLPTLAPTAARSDGFMSAHGTHVASIIFGQPETSVPG 88
Query: 253 FAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYLDLPFIEKIWE- 311
AP +F+D + T L A A N ++I G + D + E
Sbjct: 89 IAPQCRGLIVPIFSDDRRRITQLDL-ARGIERAVNAGAHIINISGGELTDFGEADGWLEN 147
Query: 312 ----ITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRGMSTWEI 367
NN+++V+A GN+G L+ PA V+ VG +D + H FS+ G ST+E
Sbjct: 148 AVSLCRQNNVLLVAAAGNNG--CDCLHVPAALPAVLAVGAMDDHGHPLDFSNWG-STYE- 203
Query: 368 PHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASPXXXXXXXXXXXXIPENNRKNIL 427
+ ++A G +I+G+K G + LSGTS A+P + R
Sbjct: 204 -------QQGILAPGEDILGAKPGGGTERLSGTSFATPIVSGVAALLLSE--QVRRGETP 254
Query: 428 NPASMKQALVEGAAKLSGPNMYEQG----AGRVDLLESYEILK 466
+P ++Q L++ A + EQ AGR+++ ++ +LK
Sbjct: 255 DPQKVRQLLLQSALPCDD-DAPEQARRCLAGRLNVSGAFTLLK 296
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 108/257 (42%), Gaps = 30/257 (11%)
Query: 168 WRRHLLMQRSQVTSLFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKER------- 220
W + S +TS G GA + +A+ DTG+ NHP N E+
Sbjct: 8 WGIKAIYNNSNLTSTSG----------GAGINIAVLDTGVNTNHPDLSNNVEQCKDFTVG 57
Query: 221 TNWTNEDTLNDNLGHGTFVAGVV---AGQDAECLGFAPDTEIYAFRVFTDAQVSYTSWFL 277
TN+T +++ D GHGT VAG G + G AP+ +++A++V D Y
Sbjct: 58 TNFT-DNSCTDRQGHGTHVAGSALANGGTGSGVYGVAPEADLWAYKVLGDDGSGYADDIA 116
Query: 278 DAFNY----AIATNIDVLNLSIGGPDYLDLPFIEKIWEITANNIIMVSAIGNDGPLYGTL 333
+A + A A N V+ G + +++++A GN GP G++
Sbjct: 117 EAIRHAGDQATALNTKVVINMSLGSSGESSLITNAVDYAYDKGVLIIAAAGNSGPKPGSI 176
Query: 334 NNPADQSDVIGVGGIDYNDH-----IASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGS 388
P + + V ++ +A FSSRG + + ++ A G + +
Sbjct: 177 GYPGALVNAVAVAALENTIQNGTYRVADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYST 236
Query: 389 KISTGCKSLSGTSVASP 405
G ++SGTS+ASP
Sbjct: 237 WFDGGYATISGTSMASP 253
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 107/231 (46%), Gaps = 21/231 (9%)
Query: 195 GAKVKMAIFDTGIRENHPHF-RNIKERTNWTNEDT-----LNDNLGHGTFVAGVV---AG 245
G+ + +A+ DTG+ +HP N+++ ++T T D GHGT VAG G
Sbjct: 25 GSGINIAVLDTGVNTSHPDLVNNVEQCKDFTGATTPINNSCTDRNGHGTHVAGTALADGG 84
Query: 246 QD-AECLGFAPDTEIYAFRVFTDAQVSYT----SWFLDAFNYAIATNID-VLNLSIGGPD 299
D A G APD +++A++V D+ Y+ + A + A AT ++++S+G
Sbjct: 85 SDQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSA 144
Query: 300 YLDLPFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDH-----I 354
L + + +++V+A GN G GT+ P + I V ++ +
Sbjct: 145 NNSL-ISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNGTYRV 203
Query: 355 ASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
A +SSRG + + ++ A G + + + G ++SGT +A+P
Sbjct: 204 ADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNGGYNTISGTXMATP 254
>pdb|3ZXY|A Chain A, Structure Of S218a Mutant Of The Protease Domain Of Pata
Length = 282
Score = 63.5 bits (153), Expect = 6e-10, Method: Composition-based stats.
Identities = 75/283 (26%), Positives = 124/283 (43%), Gaps = 29/283 (10%)
Query: 198 VKMAIFDTGIRENHPHFRNIKERTNWTNEDTLNDNLG----HGTFVAGVVAGQ-DAECLG 252
+++AI D + HP F+ T T + G HGT VA ++ GQ + G
Sbjct: 10 IRVAILDGPVDIAHPCFQGADLTVLPTLAPTAARSDGFMSAHGTHVASIIFGQPETSVPG 69
Query: 253 FAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYLDLPFIEKIWE- 311
AP +F+D + T L A A N ++I G + D + E
Sbjct: 70 IAPQCRGLIVPIFSDDRRRITQLDL-ARGIERAVNAGAHIINISGGELTDFGEADGWLEN 128
Query: 312 ----ITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRGMSTWEI 367
NN+++V+A GN+G L+ PA V+ VG +D + H FS+ G ST+E
Sbjct: 129 AVSLCRQNNVLLVAAAGNNG--CDCLHVPAALPAVLAVGAMDDHGHPLDFSNWG-STYE- 184
Query: 368 PHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASPXXXXXXXXXXXXIPENNRKNIL 427
+ ++A G +I+G+K G + LSGT+ A+P + R
Sbjct: 185 -------QQGILAPGEDILGAKPGGGTERLSGTAFATPIVSGVAALLLSE--QVRRGETP 235
Query: 428 NPASMKQALVEGAAKLSGPNMYEQG----AGRVDLLESYEILK 466
+P ++Q L++ A + EQ AGR+++ ++ +LK
Sbjct: 236 DPQKVRQLLLQSALPCDD-DAPEQARRCLAGRLNVSGAFTLLK 277
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 92/218 (42%), Gaps = 26/218 (11%)
Query: 195 GAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDTLNDNLGHGTFVAGVVAGQDAECLGFA 254
GA + + DTG+ + HP F ++ + T D GHGT AG + ++ G A
Sbjct: 31 GAGACVYVIDTGVEDTHPDFEGRAKQIK-SYASTARDGHGHGTHCAGTIG---SKTWGVA 86
Query: 255 PDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNID-------VLNLSIGGPDYLDLPFIE 307
I+ +V D+ S + ++ + V ++S+GG +
Sbjct: 87 KKVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTVASMSLGGG--YSAALNQ 144
Query: 308 KIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRGMSTWEI 367
+ ++ + + A GND +PA + V VG D ND ++FS+
Sbjct: 145 AAARLQSSGVFVAVAAGNDNRDAAN-TSPASEPTVCTVGATDSNDVRSTFSN-------- 195
Query: 368 PHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
YGRV D+ A G I + I ++SGTS+A+P
Sbjct: 196 ---YGRV-VDIFAPGTSITSTWIGGRTNTISGTSMATP 229
>pdb|3QFH|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|B Chain B, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|C Chain C, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|D Chain D, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|E Chain E, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|F Chain F, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|G Chain G, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|H Chain H, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus
Length = 447
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 89/221 (40%), Gaps = 51/221 (23%)
Query: 196 AKVKMAIFDTGIRENHPHFRNIKERTNWTN------------EDT-----LNDNLGHGTF 238
A K+AI DTG+ +NH +N T+ N E+T +ND GHGT
Sbjct: 122 ANTKIAIIDTGVMKNHDDLKN-NFSTDSKNLVPLNGFRGTEPEETGDVHDVNDRKGHGTM 180
Query: 239 VAGVVAGQDAECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGP 298
V+G + + + +G AP+ + +RVF + W A A V+N+S+G
Sbjct: 181 VSGQTSA-NGKLIGVAPNNKFTMYRVFGSKKTELL-WVSKAIVQAANDGNQVINISVGSY 238
Query: 299 DYLDL---------------PFIEKIWEITANNIIMVSAIGNDG---------------P 328
LD + I I+V+A GNDG
Sbjct: 239 IILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQ 298
Query: 329 LYGTLNN-PADQSDVIGVGGIDYNDHIASFSSRGMSTWEIP 368
G + + PA +V+ VG D +++ FS+ GM+ +I
Sbjct: 299 GNGEVKDVPASMDNVVTVGSTDQKSNLSEFSNFGMNYTDIA 339
>pdb|3T41|A Chain A, 1.95 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) S393a
Mutant From Staphylococcus Aureus
pdb|3T41|B Chain B, 1.95 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) S393a
Mutant From Staphylococcus Aureus
Length = 471
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 89/221 (40%), Gaps = 51/221 (23%)
Query: 196 AKVKMAIFDTGIRENHPHFRNIKERTNWTN------------EDT-----LNDNLGHGTF 238
A K+AI DTG+ +NH +N T+ N E+T +ND GHGT
Sbjct: 146 ANTKIAIIDTGVMKNHDDLKN-NFSTDSKNLVPLNGFRGTEPEETGDVHDVNDRKGHGTM 204
Query: 239 VAGVVAGQDAECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGP 298
V+G + + + +G AP+ + +RVF + W A A V+N+S+G
Sbjct: 205 VSGQTSA-NGKLIGVAPNNKFTMYRVFGSKKTELL-WVSKAIVQAANDGNQVINISVGSY 262
Query: 299 DYLDL---------------PFIEKIWEITANNIIMVSAIGNDG---------------P 328
LD + I I+V+A GNDG
Sbjct: 263 IILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQ 322
Query: 329 LYGTLNN-PADQSDVIGVGGIDYNDHIASFSSRGMSTWEIP 368
G + + PA +V+ VG D +++ FS+ GM+ +I
Sbjct: 323 GNGEVKDVPASMDNVVTVGSTDQKSNLSEFSNFGMNYTDIA 363
>pdb|2P4E|P Chain P, Crystal Structure Of Pcsk9
pdb|2P4E|A Chain A, Crystal Structure Of Pcsk9
Length = 692
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 111/273 (40%), Gaps = 53/273 (19%)
Query: 195 GAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDTLNDNLG------------HGTFVAGV 242
G+ V++ + DT I+ +H R I+ R T+ + + + G HGT +AGV
Sbjct: 177 GSLVEVYLLDTSIQSDH---REIEGRVMVTDFENVPEEDGTRFHRQASKCDSHGTHLAGV 233
Query: 243 VAGQDAECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYLD 302
V+G+DA G A + + RV S L + + + + GP +
Sbjct: 234 VSGRDA---GVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQL----VQPVGPLVVL 286
Query: 303 LPFI--------EKIWEITANNIIMVSAIGN---DGPLYGTLNNPADQSDVIGVGGIDYN 351
LP + +++V+A GN D LY +PA +VI VG +
Sbjct: 287 LPLAGGYSRVLNAACQRLARAGVVLVTAAGNFRDDACLY----SPASAPEVITVGATNAQ 342
Query: 352 DHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMG--SKISTGCKSLSGTSVASPXXXX 409
D + + G + +GR D+ A G +I+G S ST S SGTS A+
Sbjct: 343 DQPVTLGTLGTN-------FGRCV-DLFAPGEDIIGASSDCSTCFVSQSGTSQAAAHVAG 394
Query: 410 XXXXXXXXIPENNRKNILNPASMKQALVEGAAK 442
PE L A ++Q L+ +AK
Sbjct: 395 IAAMMLSAEPE------LTLAELRQRLIHFSAK 421
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 34/215 (15%)
Query: 202 IFDTGIRENHPHFRNIKERTNWTNEDTLNDNLGHGTFVAGVVAGQDAECLGFAPDTEIYA 261
+ DTGI +HP F + T + D GHGT AG V + G A T+++
Sbjct: 37 VIDTGIEASHPEFEGRAQMVK-TYYYSSRDGNGHGTHCAGTVG---SRTYGVAKKTQLFG 92
Query: 262 FRVFTDAQVSYTSWFLDAFNYAIATNID--------VLNLSIGGPDYLDLPFIEKIWEIT 313
+V D S + ++ +A++ + V +LS+GG +
Sbjct: 93 VKVLDDNGSGQYSTIIAGMDF-VASDKNNRNCPKGVVASLSLGGG--YSSSVNSAAARLQ 149
Query: 314 ANNIIMVSAIGN---DGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRGMSTWEIPHG 370
++ +++ A GN D Y +PA + V VG D D +SFS+
Sbjct: 150 SSGVMVAVAAGNNNADARNY----SPASEPSVCTVGASDRYDRRSSFSN----------- 194
Query: 371 YGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
YG V D+ G +I+ + I +S+SGTS+A+P
Sbjct: 195 YGSVL-DIFGPGTDILSTWIGGSTRSISGTSMATP 228
>pdb|3BPS|A Chain A, Pcsk9:egf-a Complex
pdb|3GCW|A Chain A, Pcsk9:egfa(H306y)
pdb|3GCX|A Chain A, Pcsk9:egfa (Ph 7.4)
pdb|3SQO|A Chain A, Pcsk9 J16 Fab Complex
Length = 540
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 111/273 (40%), Gaps = 53/273 (19%)
Query: 195 GAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDTLNDNLG------------HGTFVAGV 242
G+ V++ + DT I+ +H R I+ R T+ + + + G HGT +AGV
Sbjct: 25 GSLVEVYLLDTSIQSDH---REIEGRVMVTDFENVPEEDGTRFHRQASKCDSHGTHLAGV 81
Query: 243 VAGQDAECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYLD 302
V+G+DA G A + + RV S L + + + + GP +
Sbjct: 82 VSGRDA---GVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQL----VQPVGPLVVL 134
Query: 303 LPFI--------EKIWEITANNIIMVSAIGN---DGPLYGTLNNPADQSDVIGVGGIDYN 351
LP + +++V+A GN D LY +PA +VI VG +
Sbjct: 135 LPLAGGYSRVLNAACQRLARAGVVLVTAAGNFRDDACLY----SPASAPEVITVGATNAQ 190
Query: 352 DHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMG--SKISTGCKSLSGTSVASPXXXX 409
D + + G + +GR D+ A G +I+G S ST S SGTS A+
Sbjct: 191 DQPVTLGTLGTN-------FGRCV-DLFAPGEDIIGASSDCSTCFVSQSGTSQAAAHVAG 242
Query: 410 XXXXXXXXIPENNRKNILNPASMKQALVEGAAK 442
PE L A ++Q L+ +AK
Sbjct: 243 IAAMMLSAEPE------LTLAELRQRLIHFSAK 269
>pdb|2QTW|B Chain B, The Crystal Structure Of Pcsk9 At 1.9 Angstroms Resolution
Reveals Structural Homology To Resistin Within The
C-Terminal Domain
Length = 546
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 111/273 (40%), Gaps = 53/273 (19%)
Query: 195 GAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDTLNDNLG------------HGTFVAGV 242
G+ V++ + DT I+ +H R I+ R T+ + + + G HGT +AGV
Sbjct: 25 GSLVEVYLLDTSIQSDH---REIEGRVMVTDFENVPEEDGTRFHRQASKCDSHGTHLAGV 81
Query: 243 VAGQDAECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYLD 302
V+G+DA G A + + RV S L + + + + GP +
Sbjct: 82 VSGRDA---GVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQL----VQPVGPLVVL 134
Query: 303 LPFI--------EKIWEITANNIIMVSAIGN---DGPLYGTLNNPADQSDVIGVGGIDYN 351
LP + +++V+A GN D LY +PA +VI VG +
Sbjct: 135 LPLAGGYSRVLNAACQRLARAGVVLVTAAGNFRDDACLY----SPASAPEVITVGATNAQ 190
Query: 352 DHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMG--SKISTGCKSLSGTSVASPXXXX 409
D + + G + +GR D+ A G +I+G S ST S SGTS A+
Sbjct: 191 DQPVTLGTLGTN-------FGRCV-DLFAPGEDIIGASSDCSTCFVSQSGTSQAAAHVAG 242
Query: 410 XXXXXXXXIPENNRKNILNPASMKQALVEGAAK 442
PE L A ++Q L+ +AK
Sbjct: 243 IAAMMLSAEPE------LTLAELRQRLIHFSAK 269
>pdb|3P5B|A Chain A, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
pdb|3P5C|A Chain A, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 540
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 111/273 (40%), Gaps = 53/273 (19%)
Query: 195 GAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDTLNDNLG------------HGTFVAGV 242
G+ V++ + DT I+ +H R I+ R T+ + + + G HGT +AGV
Sbjct: 25 GSLVEVYLLDTSIQSDH---REIEGRVMVTDFENVPEEDGTRFHRQASKCDSHGTHLAGV 81
Query: 243 VAGQDAECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYLD 302
V+G+DA G A + + RV S L + + + + GP +
Sbjct: 82 VSGRDA---GVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQL----VQPVGPLVVL 134
Query: 303 LPFI--------EKIWEITANNIIMVSAIGN---DGPLYGTLNNPADQSDVIGVGGIDYN 351
LP + +++V+A GN D LY +PA +VI VG +
Sbjct: 135 LPLAGGYSRVLNAACQRLARAGVVLVTAAGNFRDDACLY----SPASAPEVITVGATNAQ 190
Query: 352 DHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMG--SKISTGCKSLSGTSVASPXXXX 409
D + + G + +GR D+ A G +I+G S ST S SGTS A+
Sbjct: 191 DQPVTLGTLGTN-------FGRCV-DLFAPGEDIIGASSDCSTCFVSQSGTSQAAAHVAG 242
Query: 410 XXXXXXXXIPENNRKNILNPASMKQALVEGAAK 442
PE L A ++Q L+ +AK
Sbjct: 243 IAAMMLSAEPE------LTLAELRQRLIHFSAK 269
>pdb|3H42|B Chain B, Crystal Structure Of Pcsk9 In Complex With Fab From Ldlr
Competitive Antibody
Length = 540
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 111/273 (40%), Gaps = 53/273 (19%)
Query: 195 GAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDTLNDNLG------------HGTFVAGV 242
G+ V++ + DT I+ +H R I+ R T+ + + + G HGT +AGV
Sbjct: 25 GSLVEVYLLDTSIQSDH---REIEGRVMVTDFENVPEEDGTRFHRQASKCDSHGTHLAGV 81
Query: 243 VAGQDAECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYLD 302
V+G+DA G A + + RV S L + + + + GP +
Sbjct: 82 VSGRDA---GVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQL----VQPVGPLVVL 134
Query: 303 LPFI--------EKIWEITANNIIMVSAIGN---DGPLYGTLNNPADQSDVIGVGGIDYN 351
LP + +++V+A GN D LY +PA +VI VG +
Sbjct: 135 LPLAGGYSRVLNAACQRLARAGVVLVTAAGNFRDDACLY----SPASAPEVITVGATNAQ 190
Query: 352 DHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMG--SKISTGCKSLSGTSVASPXXXX 409
D + + G + +GR D+ A G +I+G S ST S SGTS A+
Sbjct: 191 DQPVTLGTLGTN-------FGRCV-DLFAPGEDIIGASSDCSTCFVSQSGTSQAAAHVAG 242
Query: 410 XXXXXXXXIPENNRKNILNPASMKQALVEGAAK 442
PE L A ++Q L+ +AK
Sbjct: 243 IAAMMLSAEPE------LTLAELRQRLIHFSAK 269
>pdb|2PMW|B Chain B, The Crystal Structure Of Proprotein Convertase Subtilisin
Kexin Type 9 (Pcsk9)
Length = 540
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 111/273 (40%), Gaps = 53/273 (19%)
Query: 195 GAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDTLNDNLG------------HGTFVAGV 242
G+ V++ + DT I+ +H R I+ R T+ + + + G HGT +AGV
Sbjct: 25 GSLVEVYLLDTSIQSDH---REIEGRVMVTDFENVPEEDGTRFHRQASKCDSHGTHLAGV 81
Query: 243 VAGQDAECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYLD 302
V+G+DA G A + + RV S L + + + + GP +
Sbjct: 82 VSGRDA---GVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQL----VQPVGPLVVL 134
Query: 303 LPFI--------EKIWEITANNIIMVSAIGN---DGPLYGTLNNPADQSDVIGVGGIDYN 351
LP + +++V+A GN D LY +PA +VI VG +
Sbjct: 135 LPLAGGYSRVLNAACQRLARAGVVLVTAAGNFRDDACLY----SPASAPEVITVGATNAQ 190
Query: 352 DHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMG--SKISTGCKSLSGTSVASPXXXX 409
D + + G + +GR D+ A G +I+G S ST S SGTS A+
Sbjct: 191 DQPVTLGTLGTN-------FGRCV-DLFAPGEDIIGASSDCSTCFVSQSGTSQAAAHVAG 242
Query: 410 XXXXXXXXIPENNRKNILNPASMKQALVEGAAK 442
PE L A ++Q L+ +AK
Sbjct: 243 IAAMMLSAEPE------LTLAELRQRLIHFSAK 269
>pdb|2W2Q|A Chain A, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 312
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 111/273 (40%), Gaps = 53/273 (19%)
Query: 195 GAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDTLNDNLG------------HGTFVAGV 242
G+ V++ + DT I+ +H R I+ R T+ + + + G HGT +AGV
Sbjct: 25 GSLVEVYLLDTSIQSDH---REIEGRVMVTDFENVPEEDGTRFHRQASKCDSHGTHLAGV 81
Query: 243 VAGQDAECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYLD 302
V+G+DA G A + + RV S L + + + + GP +
Sbjct: 82 VSGRDA---GVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQL----VQPVGPLVVL 134
Query: 303 LPFI--------EKIWEITANNIIMVSAIGN---DGPLYGTLNNPADQSDVIGVGGIDYN 351
LP + +++V+A GN D LY +PA +VI VG +
Sbjct: 135 LPLAGGYSRVLNAACQRLARAGVVLVTAAGNFRDDACLY----SPASAPEVITVGATNAQ 190
Query: 352 DHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMG--SKISTGCKSLSGTSVASPXXXX 409
D + + G + +GR D+ A G +I+G S ST S SGTS A+
Sbjct: 191 DQPVTLGTLGTN-------FGRCV-DLFAPGEDIIGASSHCSTCFVSQSGTSQAAAHVAG 242
Query: 410 XXXXXXXXIPENNRKNILNPASMKQALVEGAAK 442
PE L A ++Q L+ +AK
Sbjct: 243 IAAMMLSAEPE------LTLAELRQRLIHFSAK 269
>pdb|2W2P|A Chain A, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
Length = 312
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 111/273 (40%), Gaps = 53/273 (19%)
Query: 195 GAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDTLNDNLG------------HGTFVAGV 242
G+ V++ + DT I+ +H R I+ R T+ + + + G HGT +AGV
Sbjct: 25 GSLVEVYLLDTSIQSDH---REIEGRVMVTDFENVPEEDGTRFHRQASKCDSHGTHLAGV 81
Query: 243 VAGQDAECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYLD 302
V+G+DA G A + + RV S L + + + + GP +
Sbjct: 82 VSGRDA---GVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQL----VQPVGPLVVL 134
Query: 303 LPFI--------EKIWEITANNIIMVSAIGN---DGPLYGTLNNPADQSDVIGVGGIDYN 351
LP + +++V+A GN D LY +PA +VI VG +
Sbjct: 135 LPLAGGYSRVLNAACQRLARAGVVLVTAAGNFRDDACLY----SPASAPEVITVGATNAQ 190
Query: 352 DHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMG--SKISTGCKSLSGTSVASPXXXX 409
D + + G + +GR D+ A G +I+G S ST S SGTS A+
Sbjct: 191 DQPVTLGTLGTN-------FGRCV-DLFAPGEDIIGASSACSTCFVSQSGTSQAAAHVAG 242
Query: 410 XXXXXXXXIPENNRKNILNPASMKQALVEGAAK 442
PE L A ++Q L+ +AK
Sbjct: 243 IAAMMLSAEPE------LTLAELRQRLIHFSAK 269
>pdb|2W2M|A Chain A, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2N|A Chain A, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 312
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 111/273 (40%), Gaps = 53/273 (19%)
Query: 195 GAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDTLNDNLG------------HGTFVAGV 242
G+ V++ + DT I+ +H R I+ R T+ + + + G HGT +AGV
Sbjct: 25 GSLVEVYLLDTSIQSDH---REIEGRVMVTDFENVPEEDGTRFHRQASKCDSHGTHLAGV 81
Query: 243 VAGQDAECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYLD 302
V+G+DA G A + + RV S L + + + + GP +
Sbjct: 82 VSGRDA---GVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQL----VQPVGPLVVL 134
Query: 303 LPFI--------EKIWEITANNIIMVSAIGN---DGPLYGTLNNPADQSDVIGVGGIDYN 351
LP + +++V+A GN D LY +PA +VI VG +
Sbjct: 135 LPLAGGYSRVLNAACQRLARAGVVLVTAAGNFRDDACLY----SPASAPEVITVGATNAQ 190
Query: 352 DHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMG--SKISTGCKSLSGTSVASPXXXX 409
D + + G + +GR D+ A G +I+G S ST S SGTS A+
Sbjct: 191 DQPVTLGTLGTN-------FGRCV-DLFAPGEDIIGASSDCSTCFVSQSGTSQAAAHVAG 242
Query: 410 XXXXXXXXIPENNRKNILNPASMKQALVEGAAK 442
PE L A ++Q L+ +AK
Sbjct: 243 IAAMMLSAEPE------LTLAELRQRLIHFSAK 269
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 34/215 (15%)
Query: 202 IFDTGIRENHPHFRNIKERTNWTNEDTLNDNLGHGTFVAGVVAGQDAECLGFAPDTEIYA 261
+ DTGI +HP F + T + D GHGT AG V + G A T+++
Sbjct: 37 VIDTGIEASHPEFEGRAQMVK-TYYYSSRDGNGHGTHCAGTVG---SRTYGVAKKTQLFG 92
Query: 262 FRVFTDAQVSYTSWFLDAFNYAIATNID--------VLNLSIGGPDYLDLPFIEKIWEIT 313
+V D S + ++ +A++ + V +LS+GG +
Sbjct: 93 VKVLDDNGSGQYSTIIAGMDF-VASDKNNRNCPKGVVASLSLGGG--YSSSVNSAAARLQ 149
Query: 314 ANNIIMVSAIGN---DGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRGMSTWEIPHG 370
++ +++ A GN D Y +PA + V VG D D +SFS+
Sbjct: 150 SSGVMVAVAAGNNNADARNY----SPASEPSVCTVGASDRYDRRSSFSN----------- 194
Query: 371 YGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
YG V D+ G I+ + I +S+SGTS+A+P
Sbjct: 195 YGSVL-DIFGPGTSILSTWIGGSTRSISGTSMATP 228
>pdb|3M0C|B Chain B, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 546
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 111/273 (40%), Gaps = 53/273 (19%)
Query: 195 GAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDTLNDNLG------------HGTFVAGV 242
G+ V++ + DT I+ +H R I+ R T+ + + + G HGT +AGV
Sbjct: 25 GSLVEVYLLDTSIQSDH---REIEGRVMVTDFENVPEEDGTRFHRQASKCDSHGTHLAGV 81
Query: 243 VAGQDAECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYLD 302
V+G+DA G A + + RV S L + + + + GP +
Sbjct: 82 VSGRDA---GVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQL----VQPVGPLVVL 134
Query: 303 LPFI--------EKIWEITANNIIMVSAIGN---DGPLYGTLNNPADQSDVIGVGGIDYN 351
LP + +++V+A GN D LY +PA +VI VG +
Sbjct: 135 LPLAGGYSRVLNAACQRLARAGVVLVTAAGNFRDDACLY----SPASAPEVITVGATNAQ 190
Query: 352 DHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMG--SKISTGCKSLSGTSVASPXXXX 409
D + + G + +GR D+ A G +I+G S ST S SGTS A+
Sbjct: 191 DQPVTLGTLGTN-------FGRCV-DLFAPGEDIIGASSYCSTCFVSQSGTSQAAAHVAG 242
Query: 410 XXXXXXXXIPENNRKNILNPASMKQALVEGAAK 442
PE L A ++Q L+ +AK
Sbjct: 243 IAAMMLSAEPE------LTLAELRQRLIHFSAK 269
>pdb|2W2O|A Chain A, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
Length = 312
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 111/273 (40%), Gaps = 53/273 (19%)
Query: 195 GAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDTLNDNLG------------HGTFVAGV 242
G+ V++ + DT I+ +H R I+ R T+ + + + G HGT +AGV
Sbjct: 25 GSLVEVYLLDTSIQSDH---REIEGRVMVTDFENVPEEDGTRFHRQASKCDSHGTHLAGV 81
Query: 243 VAGQDAECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYLD 302
V+G+DA G A + + RV S L + + + + GP +
Sbjct: 82 VSGRDA---GVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQL----VQPVGPLVVL 134
Query: 303 LPFI--------EKIWEITANNIIMVSAIGN---DGPLYGTLNNPADQSDVIGVGGIDYN 351
LP + +++V+A GN D LY +PA +VI VG +
Sbjct: 135 LPLAGGYSRVLNAACQRLARAGVVLVTAAGNFRDDACLY----SPASAPEVITVGATNAQ 190
Query: 352 DHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMG--SKISTGCKSLSGTSVASPXXXX 409
D + + G + +GR D+ A G +I+G S ST S SGTS A+
Sbjct: 191 DQPVTLGTLGTN-------FGRCV-DLFAPGEDIIGASSYCSTCFVSQSGTSQAAAHVAG 242
Query: 410 XXXXXXXXIPENNRKNILNPASMKQALVEGAAK 442
PE L A ++Q L+ +AK
Sbjct: 243 IAAMMLSAEPE------LTLAELRQRLIHFSAK 269
>pdb|2XTJ|A Chain A, The Crystal Structure Of Pcsk9 In Complex With 1d05 Fab
Length = 312
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 97/232 (41%), Gaps = 47/232 (20%)
Query: 195 GAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDTLNDNLG------------HGTFVAGV 242
G+ V++ + DT I+ +H R I+ R T+ + + + G HGT +AGV
Sbjct: 25 GSLVEVYLLDTSIQSDH---REIEGRVMVTDFENVPEEDGTRFHRQASKCDSHGTHLAGV 81
Query: 243 VAGQDAECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYLD 302
V+G+DA G A + + RV S L + + + + GP +
Sbjct: 82 VSGRDA---GVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQL----VQPVGPLVVL 134
Query: 303 LPFI--------EKIWEITANNIIMVSAIGN---DGPLYGTLNNPADQSDVIGVGGIDYN 351
LP + +++V+A GN D LY +PA +VI VG +
Sbjct: 135 LPLAGGYSRVLNAACQRLARAGVVLVTAAGNFRDDACLY----SPASAPEVITVGATNAQ 190
Query: 352 DHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMG--SKISTGCKSLSGTS 401
D + + G + +GR D+ A G +I+G S ST S SGTS
Sbjct: 191 DQPVTLGTLGTN-------FGRCV-DLFAPGEDIIGASSDCSTCFVSQSGTS 234
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 87/219 (39%), Gaps = 24/219 (10%)
Query: 193 YTGAKVKMAIFDTGIRENHPHF--RNIKERTNWTNEDTLNDNLGHGTFVAGVVAGQDAEC 250
Y G+ V + DTG+ H F R N+ D GHGT VAG + G
Sbjct: 28 YDGSGVTAFVIDTGVLNTHNEFGGRASSGYDFIDNDYDATDCNGHGTHVAGTIGG---ST 84
Query: 251 LGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAI--ATNIDVLNLSIGGPDYLDLPFIEK 308
G A + + RV + S + N+ A+ V N+S+GG +
Sbjct: 85 YGVAKNVNVVGVRVLNCSGSGSNSGVIAGINWVKNNASGPAVANMSLGGG--ASQATDDA 142
Query: 309 IWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRGMSTWEIP 368
+ A I V A GND + PA +D I VG ND +SFS+ G
Sbjct: 143 VNAAVAAGITFVVAAGNDNSNACNYS-PARAADAITVGSTTSNDSRSSFSNYGTCL---- 197
Query: 369 HGYGRVKPDVVAYGREIMGS--KISTGCKSLSGTSVASP 405
D+ A G I S ++ ++SGTS+ASP
Sbjct: 198 --------DIYAPGSSITSSWYTSNSATNTISGTSMASP 228
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 91/215 (42%), Gaps = 34/215 (15%)
Query: 202 IFDTGIRENHPHFRNIKERTNWTNEDTLNDNLGHGTFVAGVVAGQDAECLGFAPDTEIYA 261
+ DTGI +HP F + T + D GHGT AG V + G T+++
Sbjct: 37 VIDTGIEASHPEFEGRAQMVK-TYYYSSRDGNGHGTHCAGTVG---SRTYGVVKKTQLFG 92
Query: 262 FRVFTDAQVSYTSWFLDAFNYAIATNID--------VLNLSIGGPDYLDLPFIEKIWEIT 313
+V D S + ++ +A++ + V +LS+GG +
Sbjct: 93 VKVLDDNGSGQYSTIIAGMDF-VASDKNNRNCPKGVVASLSLGGG--YSSSVNSAAARLQ 149
Query: 314 ANNIIMVSAIGN---DGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRGMSTWEIPHG 370
++ +++ A GN D Y +PA + V VG D D +SFS+
Sbjct: 150 SSGVMVAVAAGNNNADARNY----SPASEPSVCTVGASDRYDRRSSFSN----------- 194
Query: 371 YGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
YG V D+ G I+ + I +S+SGTS+A+P
Sbjct: 195 YGSVL-DIFGPGTSILSTWIGGSTRSISGTSMATP 228
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 99/248 (39%), Gaps = 36/248 (14%)
Query: 168 WRRHLLMQRSQVTSLFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNED 227
W + RS+ ++ + D G G + DTG+ +HP F +
Sbjct: 10 WGLGRISHRSKGSTTYEYDTSGGSG-----TCAYVIDTGVEASHPEFEGRASQIKSFISG 64
Query: 228 TLNDNLGHGTFVAGVVAGQDAECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATN 287
D GHGT AG + ++ G A T+IY +V ++ S + ++A+ +
Sbjct: 65 QNTDGNGHGTHCAGTIG---SKTYGVAKKTKIYGVKVLDNSGSGSYSGIISGMDFAVQDS 121
Query: 288 ID-------VLNLSIGGPDYLDLPFIEKIWEITANNI---IMVSAIGNDGPLYGTLNNPA 337
V N+S+GG + + + A I + ++ + +PA
Sbjct: 122 KSRSCPKGVVANMSLGGGK------AQSVNDGAAAMIRAGVFLAVAAGNDNANAANYSPA 175
Query: 338 DQSDVIGVGGIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSL 397
+ V VG +D +SFS+ YG + D+ A G I+ + I ++
Sbjct: 176 SEPTVCTVGATTSSDARSSFSN-----------YGNLV-DIFAPGSNILSTWIGGTTNTI 223
Query: 398 SGTSVASP 405
SGTS+A+P
Sbjct: 224 SGTSMATP 231
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 28/149 (18%)
Query: 203 FDTGIRENHPHFRNIKERTNWTNEDTLNDNLGHGTFVAGVVAGQDAECL----------- 251
F+ GI N P NI ++ D GHGT A + AG A+ +
Sbjct: 79 FNKGILANDPTV-NI-------TMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTAR 130
Query: 252 GFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYLDLPFIEKIWE 311
G AP + ++ F+ + ++TS + A + A+A +D++++S G Y +P E
Sbjct: 131 GVAPRARLAVYK-FSFNEGTFTSDLIAAMDQAVADGVDMISISYG---YRFIPLYEDAIS 186
Query: 312 ITA-----NNIIMVSAIGNDGPLYGTLNN 335
I + +++ ++ GN GP G+LNN
Sbjct: 187 IASFGAMMKGVLVSASAGNRGPGIGSLNN 215
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 23/189 (12%)
Query: 189 WGKGYTGAKV---------KMAIFDTGIRENHPHFRNIKERTNWTNEDTLN-----DNLG 234
WG+ + GA V + I D+G +H N T N T N +N
Sbjct: 6 WGQTFVGATVLSDSQAGNRTICIIDSGYDRSHNDL-NANNVTGTNNSGTGNWYQPGNNNA 64
Query: 235 HGTFVAGVVA--GQDAECLGFAP--DTEIYAFRVFTDAQVSYTSWFLDAFNYAIAT-NID 289
HGT VAG +A + +G P + I+ +VF +A Y+S + A + + + +
Sbjct: 65 HGTHVAGTIAAIANNEGVVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGAN 124
Query: 290 VLNLSIGGPDYLDLPFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGID 349
V+ +S+GG + N +++++A GN G + + PA V+ V +D
Sbjct: 125 VVTMSLGGSGSTTTER-NALNTHYNNGVLLIAAAGNAGD--SSYSYPASYDSVMSVAAVD 181
Query: 350 YNDHIASFS 358
N A+FS
Sbjct: 182 SNLDHAAFS 190
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 101/266 (37%), Gaps = 46/266 (17%)
Query: 194 TGAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDTLNDNL----GHGTFVAGVVAGQDAE 249
TG V + + DTGIR H F + R + D L N GHGT VAG + G
Sbjct: 29 TGRGVNVYVIDTGIRTTHREFGG-RARVGY---DALGGNGQDCNGHGTHVAGTIGG---V 81
Query: 250 CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNI--DVLNLSIGGPDYLDLPFIE 307
G A +YA RV TS + ++ + V N+S+GG +
Sbjct: 82 TYGVAKAVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHRRPAVANMSLGG-------GVS 134
Query: 308 KIWEITANNIIMVSAIGNDGPLYGTLN----NPADQSDVIGVGGIDYNDHIASFSSRGMS 363
+ N I + N +PA ++ + VG +D ASFS+ G
Sbjct: 135 TALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATTSSDARASFSNYGSC 194
Query: 364 TWEIPHGYGRVKPDVVAYGREIMGS--KISTGCKSLSGTSVASPXXXXXXXXXXXXIPEN 421
D+ A G I + T ++L+GTS+A+P P
Sbjct: 195 V------------DLFAPGASIPSAWYTSDTATQTLNGTSMATPHVAGVAALYLEQNPS- 241
Query: 422 NRKNILNPASMKQALVEGA--AKLSG 445
PAS+ A++ GA +LSG
Sbjct: 242 -----ATPASVASAILNGATTGRLSG 262
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 93/217 (42%), Gaps = 22/217 (10%)
Query: 193 YTGAKVKMAIFDTGIRENHPHF--RNIKERTNWTNEDTLNDNLGHGTFVAGVVAGQDAEC 250
+ G V + DTG+ NH F R++ N+ +D GHGT VAG + G
Sbjct: 26 FDGFGVTAYVIDTGVNNNHEEFGGRSVSGYDFVDNDADSSDCNGHGTHVAGTIGGSQ--- 82
Query: 251 LGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAI--ATNIDVLNLSIGGPDYLDLPFIEK 308
G A + I RV + + TS + ++ A+ V N+S+GG L +
Sbjct: 83 YGVAKNVNIVGVRVLSCSGSGTTSGVISGVDWVAQNASGPSVANMSLGGGQSTALDSAVQ 142
Query: 309 IWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRGMSTWEIP 368
I + M++A ++ T +PA + VG +D +SFS+ G
Sbjct: 143 -GAIQSGVSFMLAAGNSNADACNT--SPARVPSGVTVGSTTSSDSRSSFSNWGSCV---- 195
Query: 369 HGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
D+ A G +I + G K++SGTS+A+P
Sbjct: 196 --------DLFAPGSQIKSAWYDGGYKTISGTSMATP 224
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 37.0 bits (84), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 108/270 (40%), Gaps = 48/270 (17%)
Query: 235 HGTFVAGVVAGQDA--ECLGFAPDTEIYAFRV-------------FTDAQVSYTSWFLDA 279
HGT V+ + +G + + G AP+ +I + + A D
Sbjct: 272 HGTHVSSIASGNHSSRDVDGVAPNAKIVSXTIGDGRLGSXETGTALVRAXTKVXELCRDG 331
Query: 280 FNYAIATNIDVLNLSIGGPDYLDLPFIEKIWEITAN-----NIIMVSAIGNDGPLYGTLN 334
IDV+N S G ++ + +I E+ ++ V++ GN GP T+
Sbjct: 332 ------RRIDVINXSYG--EHANWSNSGRIGELXNEVVNKYGVVWVASAGNHGPALCTVG 383
Query: 335 NPAD--QSDVIGVGG-IDYNDHIASFSSR-----GMSTWE-----IPHGYGRVKPDVVAY 381
P D Q +IGVG + A ++ R + TW I G G V A
Sbjct: 384 TPPDISQPSLIGVGAYVSPQXXEAEYAMREKLPGNVYTWTSRDPCIDGGQGVT---VCAP 440
Query: 382 GREIMGSKISTGCKS--LSGTSVASPXXXXXXXXXXXXIPENNRKNILNPASMKQALVEG 439
G I T KS +GTS A+P + + N + +P S+K+A+
Sbjct: 441 GGAIASVPQFTXSKSQLXNGTSXAAPHVAGAVALLISGLKQQNIE--YSPYSIKRAISVT 498
Query: 440 AAKLSGPNMYEQGAGRVDLLESYEILKNYQ 469
A KL + + QG G +++ +++E L ++
Sbjct: 499 ATKLGYVDPFAQGHGLLNVEKAFEHLTEHR 528
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 116/331 (35%), Gaps = 79/331 (23%)
Query: 185 ADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERT----------------------- 221
AD +W G+TG V +A+ DTGI H R++
Sbjct: 21 ADKVWDMGFTGQNVVVAVVDTGIL----HHRDLNANVLPGYDFISNSQISLDGDGRDADP 76
Query: 222 --------NWTN------EDTLNDNLGHGTFVAGVVAGQDAECLGFAP---DTEIYAFRV 264
NW +D+ HG+ VAG +A +G A ++ R
Sbjct: 77 FDEGDWFDNWACGGYPDPRKERSDSSWHGSHVAGTIAAVTNNRIGVAGVAYGAKVVPVRA 136
Query: 265 FTDAQVSYTSWFLDAFNYAIATNI----------DVLNLSIGGPDYLDLPFIEKIWEITA 314
+ Y S D +A I V+N+S+G I T
Sbjct: 137 LGRSG-GYDSDISDGLYWAAGGRIAGIPENRNPAKVINMSLGSDGQCSYNAQTMIDRATR 195
Query: 315 NNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRGMSTWEIPHGYGRV 374
++V A GN+ + P ++V+ VG ASFS+ G V
Sbjct: 196 LGALVVVAAGNENQ-NASNTWPTSCNNVLSVGATTSRGIRASFSNYG------------V 242
Query: 375 KPDVVAYGREIMGSKISTGCKS--------LSGTSVASPXXXXXXXXXXXXIPENNRKNI 426
D+ A G++I+ S + +G + ++GTS+A+P N+
Sbjct: 243 DVDLAAPGQDIL-STVDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKN-- 299
Query: 427 LNPASMKQALVEGAAKLSGPNMYEQGAGRVD 457
L PA +K LV + +G G+G VD
Sbjct: 300 LTPAELKDVLVSTTSPFNGRLDRALGSGIVD 330
>pdb|1P8J|A Chain A, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|B Chain B, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|C Chain C, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|D Chain D, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|E Chain E, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|F Chain F, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|G Chain G, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|H Chain H, Crystal Structure Of The Proprotein Convertase Furin
Length = 471
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 189 WGKGYTGAKVKMAIFDTGIRENHPHFR-----------NIKERTNWTNEDTLNDNLGHGT 237
W +G+TG + ++I D GI +NHP N ++ +NDN HGT
Sbjct: 31 WAQGFTGHGIVVSILDDGIEKNHPDLAGNYDPGASFDVNDQDPDPQPRYTQMNDNR-HGT 89
Query: 238 FVAGVVA--GQDAEC-LGFAPDTEIYAFRVFTDAQVS 271
AG VA + C +G A + I R+ D +V+
Sbjct: 90 RCAGEVAAVANNGVCGVGVAYNARIGGVRML-DGEVT 125
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 17/117 (14%)
Query: 231 DNLGHGTFVAGVVAG---QDAECLGFA--------PDTEIYAFRVFTDAQVSYTSWFLDA 279
D GHGT A AG A G P I A++V + S T L A
Sbjct: 90 DTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTD-ILAA 148
Query: 280 FNYAIATNIDVLNLSIGGPDYLDLPFIEKI----WEITANNIIMVSAIGNDGPLYGT 332
++ AIA +D+++LS+GG + F++ I + I+ ++ GN GP + T
Sbjct: 149 YDDAIADGVDIISLSVGGANPRHY-FVDAIAIGSFHAVERGILTSNSAGNGGPNFFT 204
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 115/331 (34%), Gaps = 79/331 (23%)
Query: 185 ADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERT----------------------- 221
AD +W G+TG V +A+ DTGI H R++
Sbjct: 21 ADKVWDMGFTGQNVVVAVVDTGIL----HHRDLNANVLPGYDFISNSQISLDGDGRDADP 76
Query: 222 --------NWTN------EDTLNDNLGHGTFVAGVVAGQDAECLGFAP---DTEIYAFRV 264
NW +D+ HG+ VAG +A +G A ++ R
Sbjct: 77 FDEGDWFDNWACGGRPDPRKERSDSSWHGSHVAGTIAAVTNNRIGVAGVAYGAKVVPVRA 136
Query: 265 FTDAQVSYTSWFLDAFNYAIATNI----------DVLNLSIGGPDYLDLPFIEKIWEITA 314
Y S D +A I V+N+S+G I T
Sbjct: 137 LGRCG-GYDSDISDGLYWAAGGRIAGIPENRNPAKVINMSLGSDGQCSYNAQTMIDRATR 195
Query: 315 NNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRGMSTWEIPHGYGRV 374
++V A GN+ + P ++V+ VG ASFS+ G V
Sbjct: 196 LGALVVVAAGNENQ-NASNTWPTSCNNVLSVGATTSRGIRASFSNYG------------V 242
Query: 375 KPDVVAYGREIMGSKISTGCKS--------LSGTSVASPXXXXXXXXXXXXIPENNRKNI 426
D+ A G++I+ S + +G + ++GTS+A+P N+
Sbjct: 243 DVDLAAPGQDIL-STVDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKN-- 299
Query: 427 LNPASMKQALVEGAAKLSGPNMYEQGAGRVD 457
L PA +K LV + +G G+G VD
Sbjct: 300 LTPAELKDVLVSTTSPFNGRLDRALGSGIVD 330
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 115/331 (34%), Gaps = 79/331 (23%)
Query: 185 ADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERT----------------------- 221
AD +W G+TG V +A+ DTGI H R++
Sbjct: 21 ADKVWDMGFTGQNVVVAVVDTGIL----HHRDLNANVLPGYDFISNSQISLDGDGRDADP 76
Query: 222 --------NWTN------EDTLNDNLGHGTFVAGVVAGQDAECLGFAP---DTEIYAFRV 264
NW +D+ HG+ VAG +A +G A ++ R
Sbjct: 77 FDEGDWFDNWACGGYPDPRKERSDSSWHGSHVAGTIAAVTNNRIGVAGVAYGAKVVPVRA 136
Query: 265 FTDAQVSYTSWFLDAFNYAIATNI----------DVLNLSIGGPDYLDLPFIEKIWEITA 314
Y S D +A I V+N+S+G I T
Sbjct: 137 LGRCG-GYDSDISDGLYWAAGGRIAGIPENRNPAKVINMSLGSDGQCSYNAQTMIDRATR 195
Query: 315 NNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRGMSTWEIPHGYGRV 374
++V A GN+ + P ++V+ VG ASFS+ G V
Sbjct: 196 LGALVVVAAGNENQ-NASNTWPTSCNNVLSVGATTSRGIRASFSNYG------------V 242
Query: 375 KPDVVAYGREIMGSKISTGCKS--------LSGTSVASPXXXXXXXXXXXXIPENNRKNI 426
D+ A G++I+ S + +G + ++GTS+A+P N+
Sbjct: 243 DVDLAAPGQDIL-STVDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKN-- 299
Query: 427 LNPASMKQALVEGAAKLSGPNMYEQGAGRVD 457
L PA +K LV + +G G+G VD
Sbjct: 300 LTPAELKDVLVSTTSPFNGRLDRALGSGIVD 330
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 6/52 (11%)
Query: 354 IASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
++ FSS G++ G +KPD+ A G++I+ S + LSGTS+++P
Sbjct: 375 LSRFSSWGLT------ADGNIKPDIAAPGQDILSSVANNKYAKLSGTSMSAP 420
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 85/219 (38%), Gaps = 48/219 (21%)
Query: 188 LWGKGYTGAKVKMAIFDTGIRENHPHFR-NIKERTNWTNEDTL---------------ND 231
L K GA +A+ D G +NH +R K + + +++ L ND
Sbjct: 18 LQEKASKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVND 77
Query: 232 NLG----------------HGTFVAGVVAG-------QDAECLGFAPDTEIYAFRV-FTD 267
+ HGT V+G+++G + G P+ ++ RV +
Sbjct: 78 KVAYYHDYSKDGKTAVDQEHGTHVSGILSGNAPSETKEPYRLEGAMPEAQLLLMRVEIVN 137
Query: 268 AQVSYTSWFLDAFNYAIATNIDVLNLSIGGP--DYLDLP-FIEKIWE-ITANNIIMVSAI 323
Y + A A+ V+N+S G Y +LP +K ++ + + +V++
Sbjct: 138 GLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSA 197
Query: 324 GNDGPLYGTLNNP-ADQSD--VIGV-GGIDYNDHIASFS 358
GND G P AD D V+G D +AS+S
Sbjct: 198 GNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYS 236
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 354 IASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405
++ FSS G++ G +KPD+ A G++I+ S + LSGTS ++P
Sbjct: 366 LSRFSSWGLT------ADGNIKPDIAAPGQDILSSVANNKYAKLSGTSXSAP 411
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 84/219 (38%), Gaps = 48/219 (21%)
Query: 188 LWGKGYTGAKVKMAIFDTGIRENHPHFR-NIKERTNWTNEDTL---------------ND 231
L K GA +A+ D G +NH +R K + + +++ L ND
Sbjct: 9 LQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVND 68
Query: 232 NLG----------------HGTFVAGVVAG-------QDAECLGFAPDTEIYAFRV-FTD 267
+ HGT V+G+++G + G P+ ++ RV +
Sbjct: 69 KVAYYHDYSKDGKTAVDQEHGTHVSGILSGNAPSETKEPYRLEGAXPEAQLLLXRVEIVN 128
Query: 268 AQVSYTSWFLDAFNYAIATNIDVLNLSIGGP--DYLDLP-FIEKIWE-ITANNIIMVSAI 323
Y + A AI V+N S G Y +LP +K ++ + + +V++
Sbjct: 129 GLADYARNYAQAIRDAINLGAKVINXSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSA 188
Query: 324 GNDGPLYGTLNNP-ADQSD--VIGV-GGIDYNDHIASFS 358
GND G P AD D V+G D +AS+S
Sbjct: 189 GNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYS 227
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 73/331 (22%), Positives = 121/331 (36%), Gaps = 79/331 (23%)
Query: 185 ADALWGKGYTGAKVKMAIFDTGIREN----------------HPHFRNIKER-TNWTNED 227
AD +W +G+TG V +++ DTGI ++ P R+ +R N +E
Sbjct: 22 ADKVWDRGFTGQGVVVSVVDTGILDHVDLNGNMLPGYDFISSAPKARDGDQRDNNPADEG 81
Query: 228 TLNDNLG----------------HGTFVAGVVAGQDAECLGFAP---DTEIYAFRVFTDA 268
DN HG+ VAG +A +G A ++ RV
Sbjct: 82 DWFDNWDCGGYPDPRREKRFSTWHGSHVAGTIAAVTNNGVGVAGVAYGAKVIPVRVLGKC 141
Query: 269 QVSYTSWFLDAFNYAIATNID----------VLNLSIGGPDYLDLPFIEKIWEITANNII 318
Y S D ++ +ID V+N+S+GG I + T +
Sbjct: 142 G-GYDSDITDGMYWSAGGHIDGVPDNQNPAQVINMSLGGDGDCSQSSQRIIDKTTNLGAL 200
Query: 319 MVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRG------------MSTWE 366
+V A GN+ + P+ ++V+ VG A FS+ G +ST +
Sbjct: 201 IVIAAGNEN-QDASRTWPSSCNNVLSVGATTPKGKRAPFSNYGARVHLAAPGTNILSTID 259
Query: 367 IPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASPXXXXXXXXXXXXIPENNRKNI 426
+ G+ P +YG + +GTS+A+P N+
Sbjct: 260 V----GQAGPVRSSYGMK-------------AGTSMAAPHVSGVAALVISA--ANSIGKT 300
Query: 427 LNPASMKQALVEGAAKLSGPNMYEQGAGRVD 457
L P+ + LV ++ +G G+G VD
Sbjct: 301 LTPSELSDILVRTTSRFNGRLDRGLGSGIVD 331
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 61/153 (39%), Gaps = 19/153 (12%)
Query: 192 GYTGAKVKMAIFDTGIRENHPHFR-NIKER-----TNWTNEDTLNDNLGHGTFVAGVVAG 245
G G V +A+ D G+ HP N++ T + + + HGT V+G++A
Sbjct: 66 GVLGQGVNVAVVDDGLAIAHPDLADNVRPGSKNVVTGSDDPTPTDPDTAHGTSVSGIIAA 125
Query: 246 QDAE--CLGFAPDTEIYAFRVFTD-AQVSYTSWFLDAFNYAIATNIDVLNLSIG------ 296
D G AP ++ F + D +Q W + + + V N S G
Sbjct: 126 VDNAIGTKGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDNRVFNQSYGMSVVDP 185
Query: 297 -GPDYLDLPFIEKIWE---ITANNIIMVSAIGN 325
+ LD +++++E + A + A GN
Sbjct: 186 RSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGN 218
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 78/195 (40%), Gaps = 29/195 (14%)
Query: 188 LWGKGYTGAKVKMAIFDTGIRENHPHFRN---IKERTNWTNEDTLNDNLGH----GTFVA 240
LW + +G + +A+ DTG+ HP R + E + + GT VA
Sbjct: 147 LWEEA-SGTNIIVAVVDTGVDGTHPDLEGQVIAGYRPAFDEELPAGTDSSYGGSAGTHVA 205
Query: 241 GVVAGQD--AECLGFAPDTEIYAFRVFTD-AQVSYTSWFLDAFN-----YAIATNIDVLN 292
G +A + +G AP +I +F D A V + D + +A V+N
Sbjct: 206 GTIAAKKDGKGIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMN 265
Query: 293 LSIGGPDYLDLPFIEKIWEITANNIIMVSAIGNDGPLYGTLNN----PADQSDVIGVGGI 348
S GG Y E + ++MV + GN+ T ++ PA VI V +
Sbjct: 266 HSWGGWGY-SYTMKEAFDYAMEHGVVMVVSAGNN-----TSDSHHQYPAGYPGVIQVAAL 319
Query: 349 DYND---HIASFSSR 360
DY +A FSSR
Sbjct: 320 DYYGGTFRVAGFSSR 334
>pdb|1PA6|B Chain B, Crystal Structure Of The Oxytricha Nova Telomere
End-Binding Protein Complexed With Noncognate Ssdna
Ggggttttgagg
pdb|1PH2|B Chain B, Crystal Structure Of The Oxytricha Nova Telomere End-
Binding Protein Complexed With Noncognate Ssdna
Ggggttttg
pdb|1PH3|B Chain B, Crystal Structure Of The Oxytricha Nova Telomere
End-Binding Protein Complexed With Noncognate Ssdna
Ggggttttggtg
pdb|1PH4|B Chain B, Crystal Structure Of The Oxytricha Nova Telomere
End-Binding Protein Complexed With Noncognate Ssdna
Ggggttttggcg
pdb|1PH5|B Chain B, Crystal Structure Of The Oxytricha Nova Telomere End-
Binding Protein Complexed With Noncognate Ssdna
Ggggttttg(3dr)gg
pdb|1PH7|B Chain B, Crystal Structure Of The Oxytricha Nova Telomere
End-Binding Protein Complexed With Noncognate Ssdna
Ggggttttgigg
pdb|1PH8|B Chain B, Crystal Structure Of The Oxytricha Nova Telomere End-
Binding Protein Complexed With Noncognate Ssdna
Ggggttttgcgg
pdb|1PH9|B Chain B, Crystal Structure Of The Oxytricha Nova Telomere
End-Binding Protein Complexed With Noncognate Ssdna
Ggggttttgagg
pdb|1PHJ|B Chain B, Crystal Structure Of The Oxytricha Nova Telomere End-
Binding Protein Complexed With Noncognate Ssdna Gg(3dr)
Gttttgggg
Length = 216
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 15/123 (12%)
Query: 50 NNYIVRFREYKTAEDHCSY--LKSRITPDGWK--WIERKNPASKYPTDF--------GLI 97
NN+ + R +AE SY L++R+ +K ER NP ++YP + +
Sbjct: 83 NNWSLELRRVNSAEVFTSYANLEARLIVHSFKPNLQERLNP-TRYPVNLFRDDEFKTTIQ 141
Query: 98 SVEESAKQGLIEEIERLNLVKDVS--VDSSYKRGLLGGAFEDGKKRPGKIFTSMSFNEGE 155
+A Q I + + + + D+S D++ K+G + G F+ SF EG
Sbjct: 142 HFRHTALQAAINKTVKGDNLVDISKVADAAGKKGKVDAGIVKASASKGDEFSDFSFKEGN 201
Query: 156 HYT 158
T
Sbjct: 202 TAT 204
>pdb|1PH1|B Chain B, Crystal Structure Of The Oxytricha Nova Telomere End-
Binding Protein Complexed With Noncognate Ssdna
Ggggttttggggt
pdb|1PH6|B Chain B, Crystal Structure Of The Oxytricha Nova Telomere End-
Binding Protein Complexed With Noncognate Ssdna
Ggggttttgtgg
Length = 217
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 15/123 (12%)
Query: 50 NNYIVRFREYKTAEDHCSY--LKSRITPDGWK--WIERKNPASKYPTDF--------GLI 97
NN+ + R +AE SY L++R+ +K ER NP ++YP + +
Sbjct: 84 NNWSLELRRVNSAEVFTSYANLEARLIVHSFKPNLQERLNP-TRYPVNLFRDDEFKTTIQ 142
Query: 98 SVEESAKQGLIEEIERLNLVKDVS--VDSSYKRGLLGGAFEDGKKRPGKIFTSMSFNEGE 155
+A Q I + + + + D+S D++ K+G + G F+ SF EG
Sbjct: 143 HFRHTALQAAINKTVKGDNLVDISKVADAAGKKGKVDAGIVKASASKGDEFSDFSFKEGN 202
Query: 156 HYT 158
T
Sbjct: 203 TAT 205
>pdb|1OTC|B Chain B, The O. Nova Telomere End Binding Protein Complexed With
Single Strand Dna
pdb|1JB7|B Chain B, Dna G-Quartets In A 1.86 A Resolution Structure Of An
Oxytricha Nova Telomeric Protein-Dna Complex
Length = 260
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 15/123 (12%)
Query: 50 NNYIVRFREYKTAEDHCSY--LKSRITPDGWK--WIERKNPASKYPTDF--------GLI 97
NN+ + R +AE SY L++R+ +K ER NP ++YP + +
Sbjct: 91 NNWSLELRRVNSAEVFTSYANLEARLIVHSFKPNLQERLNP-TRYPVNLFRDDEFKTTIQ 149
Query: 98 SVEESAKQGLIEEIERLNLVKDVS--VDSSYKRGLLGGAFEDGKKRPGKIFTSMSFNEGE 155
+A Q I + + + + D+S D++ K+G + G F+ SF EG
Sbjct: 150 HFRHTALQAAINKTVKGDNLVDISKVADAAGKKGKVDAGIVKASASKGDEFSDFSFKEGN 209
Query: 156 HYT 158
T
Sbjct: 210 TAT 212
>pdb|1VRA|B Chain B, Crystal Structure Of Arginine Biosynthesis Bifunctional
Protein Argj (10175521) From Bacillus Halodurans At 2.00
A Resolution
Length = 215
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 16/74 (21%)
Query: 180 TSLFGADALWGK-----GYTGAKVKMAIFDTGI------RENHPHFRNIKERTNWTNED- 227
T+++GADA WG+ GY+G +V D I +++ P + +E T + E
Sbjct: 121 TAIYGADANWGRIICAIGYSGCEVNQETIDIAIGPIVTLKQSEPTGFSEEEATAYLKEAD 180
Query: 228 ----TLNDNLGHGT 237
++N ++G+GT
Sbjct: 181 PVKISVNLHIGNGT 194
>pdb|2ID4|A Chain A, The 1.9 A Structure Of Kex2 In Complex With An
Ac-R-E-R-K-Chloromethyl Ketone Inhibitor.
pdb|2ID4|B Chain B, The 1.9 A Structure Of Kex2 In Complex With An
Ac-R-E-R-K-Chloromethyl Ketone Inhibitor
Length = 503
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 91/239 (38%), Gaps = 29/239 (12%)
Query: 188 LWGKGYTGAKVKMAIFDTGIR-ENHPHFRNIKERTNWTNEDTLN------DNLGHGTFVA 240
LW TGA V AI D G+ EN N +W D N + HGT A
Sbjct: 46 LWYNNITGAGVVAAIVDDGLDYENEDLKDNFXAEGSWDFNDNTNLPKPRLSDDYHGTRCA 105
Query: 241 GVVAGQDAE--C-LGFAPDTEIYAFRVF-----TDAQVSYTSWFLDAFN-YAIATNIDVL 291
G +A + C +G + +I R+ T+ + + + LD + Y+ +
Sbjct: 106 GEIAAKKGNNFCGVGVGYNAKISGIRILSGDITTEDEAASLIYGLDVNDIYSCSWGPADD 165
Query: 292 NLSIGGP-DYLDLPFIEKIWE-ITANNIIMVSAIGNDGPLYGTLNNPADQSDV--IGVGG 347
+ GP D + ++ + E + I V A GN G N + + I +G
Sbjct: 166 GRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGA 225
Query: 348 IDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGC-KSLSGTSVASP 405
ID+ D +S + + + G G I S I+ C S GTS A+P
Sbjct: 226 IDHKDLHPPYSEGCSAVMAVTYSSGS--------GEYIHSSDINGRCSNSHGGTSAAAP 276
>pdb|1R64|A Chain A, The 2.2 A Crystal Structure Of Kex2 Protease In Complex
With Ac-Arg- Glu-Lys-Boroarg Peptidyl Boronic Acid
Inhibitor
pdb|1R64|B Chain B, The 2.2 A Crystal Structure Of Kex2 Protease In Complex
With Ac-Arg- Glu-Lys-Boroarg Peptidyl Boronic Acid
Inhibitor
Length = 481
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 91/239 (38%), Gaps = 29/239 (12%)
Query: 188 LWGKGYTGAKVKMAIFDTGIR-ENHPHFRNIKERTNWTNEDTLN------DNLGHGTFVA 240
LW TGA V AI D G+ EN N +W D N + HGT A
Sbjct: 39 LWYNNITGAGVVAAIVDDGLDYENEDLKDNFCAEGSWDFNDNTNLPKPRLSDDYHGTRCA 98
Query: 241 GVVAGQDAE--C-LGFAPDTEIYAFRVF-----TDAQVSYTSWFLDAFN-YAIATNIDVL 291
G +A + C +G + +I R+ T+ + + + LD + Y+ +
Sbjct: 99 GEIAAKKGNNFCGVGVGYNAKISGIRILSGDITTEDEAASLIYGLDVNDIYSCSWGPADD 158
Query: 292 NLSIGGP-DYLDLPFIEKIWE-ITANNIIMVSAIGNDGPLYGTLNNPADQSDV--IGVGG 347
+ GP D + ++ + E + I V A GN G N + + I +G
Sbjct: 159 GRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGA 218
Query: 348 IDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGC-KSLSGTSVASP 405
ID+ D +S + + + G G I S I+ C S GTS A+P
Sbjct: 219 IDHKDLHPPYSEGCSAVMAVTYSSGS--------GEYIHSSDINGRCSNSHGGTSAAAP 269
>pdb|1OT5|A Chain A, The 2.4 Angstrom Crystal Sructure Of Kex2 In Complex With
A Peptidyl- Boronic Acid Inhibitor
pdb|1OT5|B Chain B, The 2.4 Angstrom Crystal Sructure Of Kex2 In Complex With
A Peptidyl- Boronic Acid Inhibitor
Length = 477
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 91/239 (38%), Gaps = 29/239 (12%)
Query: 188 LWGKGYTGAKVKMAIFDTGIR-ENHPHFRNIKERTNWTNEDTLN------DNLGHGTFVA 240
LW TGA V AI D G+ EN N +W D N + HGT A
Sbjct: 37 LWYNNITGAGVVAAIVDDGLDYENEDLKDNFCAEGSWDFNDNTNLPKPRLSDDYHGTRCA 96
Query: 241 GVVAGQDAE--C-LGFAPDTEIYAFRVF-----TDAQVSYTSWFLDAFN-YAIATNIDVL 291
G +A + C +G + +I R+ T+ + + + LD + Y+ +
Sbjct: 97 GEIAAKKGNNFCGVGVGYNAKISGIRILSGDITTEDEAASLIYGLDVNDIYSCSWGPADD 156
Query: 292 NLSIGGP-DYLDLPFIEKIWE-ITANNIIMVSAIGNDGPLYGTLNNPADQSDV--IGVGG 347
+ GP D + ++ + E + I V A GN G N + + I +G
Sbjct: 157 GRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGA 216
Query: 348 IDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGC-KSLSGTSVASP 405
ID+ D +S + + + G G I S I+ C S GTS A+P
Sbjct: 217 IDHKDLHPPYSEGCSAVMAVTYSSGS--------GEYIHSSDINGRCSNSHGGTSAAAP 267
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,231,426
Number of Sequences: 62578
Number of extensions: 1379984
Number of successful extensions: 2967
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 2663
Number of HSP's gapped (non-prelim): 132
length of query: 1013
length of database: 14,973,337
effective HSP length: 108
effective length of query: 905
effective length of database: 8,214,913
effective search space: 7434496265
effective search space used: 7434496265
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)