Query 040133
Match_columns 1013
No_of_seqs 541 out of 2968
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 05:27:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040133.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040133hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4266 Subtilisin kexin isozy 100.0 5E-244 1E-248 2012.5 54.6 998 1-1011 1-1033(1033)
2 cd07479 Peptidases_S8_SKI-1_li 100.0 2.2E-53 4.7E-58 462.1 27.1 255 189-445 1-255 (255)
3 PTZ00262 subtilisin-like prote 100.0 7.9E-49 1.7E-53 461.2 28.8 285 157-469 285-619 (639)
4 cd05562 Peptidases_S53_like Pe 100.0 5E-45 1.1E-49 400.8 26.1 251 192-463 1-274 (275)
5 cd07489 Peptidases_S8_5 Peptid 100.0 1.3E-44 2.8E-49 403.5 28.3 267 184-467 1-302 (312)
6 cd07497 Peptidases_S8_14 Pepti 100.0 3.7E-45 8.1E-50 408.0 23.0 240 195-440 1-311 (311)
7 cd07476 Peptidases_S8_thiazoli 100.0 3.2E-44 7E-49 392.9 26.3 246 188-446 2-255 (267)
8 cd05561 Peptidases_S8_4 Peptid 100.0 8.7E-44 1.9E-48 383.4 26.2 235 198-454 1-239 (239)
9 cd07475 Peptidases_S8_C5a_Pept 100.0 7.6E-44 1.6E-48 402.1 26.5 269 187-463 1-346 (346)
10 cd04077 Peptidases_S8_PCSK9_Pr 100.0 5.8E-43 1.3E-47 378.8 25.4 246 168-442 1-255 (255)
11 cd07474 Peptidases_S8_subtilis 100.0 6.4E-43 1.4E-47 385.5 25.7 256 195-461 1-295 (295)
12 cd07487 Peptidases_S8_1 Peptid 100.0 1.6E-42 3.5E-47 375.4 25.5 235 195-441 1-264 (264)
13 cd07484 Peptidases_S8_Thermita 100.0 3.2E-42 7E-47 373.8 27.5 251 160-443 3-259 (260)
14 cd07481 Peptidases_S8_Bacillop 100.0 2.6E-42 5.6E-47 376.3 26.3 236 195-441 1-264 (264)
15 cd07493 Peptidases_S8_9 Peptid 100.0 3.2E-42 6.8E-47 374.8 25.3 233 197-441 1-261 (261)
16 KOG1153 Subtilisin-related pro 100.0 4.4E-43 9.6E-48 388.4 17.9 348 45-440 76-460 (501)
17 cd07483 Peptidases_S8_Subtilis 100.0 5.1E-42 1.1E-46 379.7 25.2 228 196-441 1-291 (291)
18 cd07478 Peptidases_S8_CspA-lik 100.0 4.5E-41 9.7E-46 392.7 27.0 256 193-454 1-455 (455)
19 cd04059 Peptidases_S8_Protein_ 100.0 2.4E-41 5.2E-46 373.5 23.1 261 160-441 2-297 (297)
20 cd07485 Peptidases_S8_Fervidol 100.0 5.2E-41 1.1E-45 367.8 25.5 234 187-439 1-273 (273)
21 cd04852 Peptidases_S8_3 Peptid 100.0 3.1E-41 6.8E-46 375.6 23.7 228 182-441 11-307 (307)
22 cd07490 Peptidases_S8_6 Peptid 100.0 6.6E-41 1.4E-45 361.8 25.4 236 197-441 1-254 (254)
23 cd04847 Peptidases_S8_Subtilis 100.0 4.7E-41 1E-45 371.3 22.6 237 199-441 2-291 (291)
24 cd07494 Peptidases_S8_10 Pepti 100.0 1.4E-40 3E-45 369.6 24.6 242 179-446 4-288 (298)
25 cd07477 Peptidases_S8_Subtilis 100.0 2.8E-40 6.1E-45 350.9 25.8 224 197-439 1-229 (229)
26 cd04842 Peptidases_S8_Kp43_pro 100.0 1.3E-40 2.8E-45 366.4 23.9 243 191-441 2-293 (293)
27 cd04843 Peptidases_S8_11 Pepti 100.0 1.1E-40 2.3E-45 366.8 22.9 233 183-441 2-277 (277)
28 cd07496 Peptidases_S8_13 Pepti 100.0 1.8E-40 4E-45 365.6 24.8 223 197-439 1-285 (285)
29 cd04857 Peptidases_S8_Tripepti 100.0 2.8E-40 6.1E-45 377.8 25.7 205 231-443 183-412 (412)
30 cd07498 Peptidases_S8_15 Pepti 100.0 4.6E-40 1E-44 353.0 25.3 222 198-439 1-242 (242)
31 cd07480 Peptidases_S8_12 Pepti 100.0 6.2E-40 1.3E-44 363.7 25.7 255 191-459 3-296 (297)
32 cd07491 Peptidases_S8_7 Peptid 100.0 7.6E-40 1.7E-44 354.6 21.8 205 195-418 2-230 (247)
33 cd07473 Peptidases_S8_Subtilis 100.0 5.8E-39 1.3E-43 347.6 26.0 228 196-441 2-259 (259)
34 PF00082 Peptidase_S8: Subtila 100.0 2.1E-39 4.5E-44 353.7 19.9 253 199-463 1-282 (282)
35 cd07482 Peptidases_S8_Lantibio 100.0 6.8E-39 1.5E-43 352.7 23.5 225 197-439 1-294 (294)
36 cd07492 Peptidases_S8_8 Peptid 100.0 3.4E-38 7.3E-43 334.9 24.4 214 197-441 1-222 (222)
37 cd04848 Peptidases_S8_Autotran 100.0 4.8E-38 1E-42 339.1 23.3 233 194-441 1-267 (267)
38 KOG1114 Tripeptidyl peptidase 100.0 9.9E-34 2.1E-38 332.0 25.1 359 232-616 309-719 (1304)
39 cd07488 Peptidases_S8_2 Peptid 100.0 8.2E-33 1.8E-37 299.6 19.4 225 201-440 5-247 (247)
40 cd00306 Peptidases_S8_S53 Pept 100.0 7.6E-32 1.6E-36 283.2 25.1 224 198-439 1-241 (241)
41 KOG3526 Subtilisin-like propro 100.0 8.4E-29 1.8E-33 268.3 22.9 390 45-470 27-464 (629)
42 COG1404 AprE Subtilisin-like s 99.9 4.5E-25 9.8E-30 255.3 22.5 264 183-462 127-419 (508)
43 cd04056 Peptidases_S53 Peptida 99.8 1.6E-18 3.4E-23 198.2 17.4 166 250-420 83-300 (361)
44 KOG3525 Subtilisin-like propro 99.1 1.7E-09 3.7E-14 126.2 17.7 286 164-469 4-330 (431)
45 COG4934 Predicted protease [Po 98.9 6.2E-09 1.3E-13 130.0 13.1 236 179-419 211-498 (1174)
46 PF09822 ABC_transp_aux: ABC-t 97.3 0.00098 2.1E-08 73.8 9.7 104 626-745 166-269 (271)
47 PF05922 Inhibitor_I9: Peptida 97.3 0.0003 6.6E-09 63.1 4.3 78 51-128 1-81 (82)
48 PF14258 DUF4350: Domain of un 96.8 0.0045 9.8E-08 54.5 7.5 63 631-695 7-70 (70)
49 TIGR03521 GldG gliding-associa 94.6 0.11 2.4E-06 63.7 9.0 101 631-745 200-311 (552)
50 PF14874 PapD-like: Flagellar- 88.1 3.5 7.5E-05 38.6 9.3 98 470-583 2-101 (102)
51 PF06280 DUF1034: Fn3-like dom 84.9 1.3 2.9E-05 42.6 4.7 68 493-560 15-101 (112)
52 KOG3861 Sensory cilia assembly 82.6 3.5 7.5E-05 46.4 7.1 91 629-745 23-116 (438)
53 PF15099 PIRT: Phosphoinositid 80.5 0.94 2E-05 44.6 1.7 31 975-1005 83-115 (129)
54 PF08532 Glyco_hydro_42M: Beta 78.8 4.1 8.9E-05 43.5 6.2 60 630-694 31-90 (207)
55 PF05393 Hum_adeno_E3A: Human 72.5 3.4 7.5E-05 38.3 2.9 30 973-1002 36-65 (94)
56 KOG4266 Subtilisin kexin isozy 71.9 1.4 3.1E-05 53.1 0.5 68 808-875 882-968 (1033)
57 PF08693 SKG6: Transmembrane a 71.5 1.7 3.6E-05 34.8 0.6 25 973-997 16-40 (40)
58 KOG1114 Tripeptidyl peptidase 66.3 4.1 8.8E-05 51.7 2.7 24 192-215 77-100 (1304)
59 cd03142 GATase1_ThuA Type 1 gl 66.1 16 0.00036 39.6 7.0 58 636-694 30-94 (215)
60 cd03143 A4_beta-galactosidase_ 62.7 24 0.00051 35.6 7.2 55 630-688 27-81 (154)
61 PF15330 SIT: SHP2-interacting 55.3 12 0.00026 36.4 3.2 31 974-1004 1-34 (107)
62 PF15102 TMEM154: TMEM154 prot 52.6 8.2 0.00018 39.3 1.7 14 975-988 62-75 (146)
63 PF06030 DUF916: Bacterial pro 47.7 42 0.00091 33.2 5.8 64 495-558 36-119 (121)
64 CHL00123 rps6 ribosomal protei 38.1 42 0.0009 31.9 4.0 41 658-698 6-48 (97)
65 PF01974 tRNA_int_endo: tRNA i 31.4 2E+02 0.0043 26.3 7.3 61 632-693 5-74 (85)
66 TIGR02483 PFK_mixed phosphofru 31.3 66 0.0014 37.2 4.9 57 642-698 164-225 (324)
67 PF07090 DUF1355: Protein of u 28.0 60 0.0013 34.3 3.6 71 628-699 26-112 (177)
68 PF14610 DUF4448: Protein of u 26.3 30 0.00066 36.5 1.1 22 975-996 163-184 (189)
69 PRK05585 yajC preprotein trans 26.2 49 0.0011 32.1 2.3 13 987-999 31-43 (106)
70 COG1862 YajC Preprotein transl 25.3 56 0.0012 31.3 2.5 30 973-1002 7-37 (97)
71 PRK03094 hypothetical protein; 25.1 1E+02 0.0022 28.6 4.0 35 629-666 8-42 (80)
72 PF11377 DUF3180: Protein of u 23.3 99 0.0021 31.3 4.0 36 970-1005 27-62 (138)
73 TIGR02482 PFKA_ATP 6-phosphofr 23.1 77 0.0017 36.3 3.6 57 642-698 162-223 (301)
74 COG1661 Predicted DNA-binding 22.5 1.5E+02 0.0032 30.4 4.9 64 662-733 12-79 (141)
75 PF12487 DUF3703: Protein of u 22.1 39 0.00085 33.1 0.8 13 717-729 84-98 (112)
76 PF03537 Glyco_hydro_114: Glyc 22.1 1E+02 0.0022 27.7 3.5 30 658-693 25-54 (74)
77 cd01867 Rab8_Rab10_Rab13_like 21.9 46 0.001 33.4 1.3 105 578-695 3-115 (167)
78 PF06283 ThuA: Trehalose utili 21.3 3.4E+02 0.0073 29.0 7.9 62 631-694 20-87 (217)
79 cd01015 CSHase N-carbamoylsarc 21.2 1.5E+02 0.0032 30.7 5.0 40 662-701 1-53 (179)
80 PF00265 TK: Thymidine kinase; 21.1 78 0.0017 33.3 2.9 32 663-695 79-110 (176)
81 TIGR03767 P_acnes_RR metalloph 20.9 5.1E+02 0.011 31.8 9.8 102 641-752 280-392 (496)
82 PRK13209 L-xylulose 5-phosphat 20.8 2.7E+02 0.0058 30.8 7.2 57 628-695 20-77 (283)
83 smart00002 PLP Myelin proteoli 20.3 40 0.00086 29.5 0.4 10 654-663 23-32 (60)
84 PF06679 DUF1180: Protein of u 20.3 87 0.0019 32.8 2.9 40 964-1006 89-128 (163)
85 PRK01060 endonuclease IV; Prov 20.1 2.3E+02 0.005 31.2 6.6 54 631-697 14-72 (281)
86 TIGR00847 ccoS cytochrome oxid 20.0 1E+02 0.0022 26.2 2.7 23 974-996 6-28 (51)
No 1
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-244 Score=2012.48 Aligned_cols=998 Identities=68% Similarity=1.167 Sum_probs=929.8
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcCcccCCcEEEEeCCCCChHHHHHHHHhhcCC---CC
Q 040133 1 MTPHRTLSSFPFKSSLLTVLVSFYLLQFIPSPSPIQTPTQNQNQTRISRNNYIVRFREYKTAEDHCSYLKSRITP---DG 77 (1013)
Q Consensus 1 m~~~~~~~~~~~~~~lll~~l~l~l~~~~p~~~~~~~~s~~~~~~~~v~~~yIV~fk~~~~~~~~~~~l~~~~~~---~~ 77 (1013)
|......++|+++++.++.++..+++...|++--.+.+.-+.....+++.||||.|+.+..+.+++.+|++++.. .+
T Consensus 1 mk~~~~~~~~~~~~~~~~~~l~v~~F~~~ps~~cs~~~~~~~f~~tvve~EyIv~F~~y~~Ak~r~syi~skl~gS~Vtn 80 (1033)
T KOG4266|consen 1 MKVLGEASSYPYRSCIIVVFLSVSLFWLRPSTYCSQQQNLNPFNVTVVESEYIVRFKQYKPAKDRRSYIESKLRGSGVTN 80 (1033)
T ss_pred CchhhhhhhccccceEEEEEeeeeeeeecccCCCchhhccCccceeeecceeEEEecccccchHHHHHHHHHhhcCCCCc
Confidence 677778889999999999999999888888877666655555666789999999999999999999999999984 48
Q ss_pred CchhhccCCCccccceeeeEEecccccHH---HHHHHHcCCCceEEEeCceeeecccCCcccCCCCCCCccccccccccC
Q 040133 78 WKWIERKNPASKYPTDFGLISVEESAKQG---LIEEIERLNLVKDVSVDSSYKRGLLGGAFEDGKKRPGKIFTSMSFNEG 154 (1013)
Q Consensus 78 ~~~v~r~~~~~~~~~~f~v~~v~~~~~~~---~i~~L~~~P~V~~Vepd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 154 (1013)
|.|++|.|++.+||+||+++.+.+...+. .+++|+-+|.|+.|.|++.+.+... .++..++|+.+...+++.+.
T Consensus 81 WriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~vk~v~pqr~V~r~l~---y~~~~~~p~n~t~~~~~~qg 157 (1033)
T KOG4266|consen 81 WRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDVKVVFPQRRVLRGLS---YPDGKKRPGNITTSMSFEQG 157 (1033)
T ss_pred eeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCCceeecchhhhhhccc---ccccCCCCCcceeeeecccc
Confidence 99999999999999999999997765433 4788999999999999999988654 56666677777766666665
Q ss_pred cccc--cccccCCccccccccccccccccccCchhhhhCCCCCCCcEEEEEcCCCCCCCCCcccccccccCCCCCCCCCC
Q 040133 155 EHYT--ATTSNCTINWRRHLLMQRSQVTSLFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDTLNDN 232 (1013)
Q Consensus 155 ~~~~--~~~~~~~~~W~l~~~~~~~~~~~~i~a~~aW~~g~tG~GV~VaVIDTGId~~Hpdl~~i~~~~~~~~~~~~~D~ 232 (1013)
.... +..+.....|+++...+..|+..+++++-+|++|+||++|+|||+|||+..+||+|++++++.+|+++++.+|.
T Consensus 158 ~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~VkvAiFDTGl~~~HPHFrnvKERTNWTNE~tLdD~ 237 (1033)
T KOG4266|consen 158 TESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAKVKVAIFDTGLRADHPHFRNVKERTNWTNEDTLDDN 237 (1033)
T ss_pred ccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCceEEEEeecccccCCccccchhhhcCCcCccccccC
Confidence 4433 23344556899998889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhhhhhccCCCcccccCCCeEEEEEEecCCCCCchHHHHHHHHHHHhCCCeEEEecCCCCCCCChHHHHHHHHH
Q 040133 233 LGHGTFVAGVVAGQDAECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYLDLPFIEKIWEI 312 (1013)
Q Consensus 233 ~gHGThVAGIIAg~~~~~~GVAP~A~I~~vrV~~~~g~~~~s~il~Ai~~Ai~~gadVINlS~G~~~~~~~~~~~ai~~a 312 (1013)
.||||+|||+||+. ++|.|+||+++|+++|||.+.+.++++|+++|++||+..++||+|+|+|+|++.|.+|.++++++
T Consensus 238 lgHGTFVAGvia~~-~ec~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGPDfmD~PFVeKVwEl 316 (1033)
T KOG4266|consen 238 LGHGTFVAGVIAGR-NECLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGPDFMDLPFVEKVWEL 316 (1033)
T ss_pred cccceeEeeeeccc-hhhcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCcccccchHHHHHHhh
Confidence 99999999999997 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEEeccCCCCCCCCCCCCCCCCCceEEeeeecCCCccccCCCCCCccccCCCCCCCcceEEecCCceeeecCCC
Q 040133 313 TANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKIST 392 (1013)
Q Consensus 313 ~~~GIivVaAAGN~G~~~~~i~~PA~~~~VItVGAvd~~g~~a~fSs~G~st~~~P~~~G~~KpDI~APG~~I~St~~~~ 392 (1013)
.+++||+|.|+||+|+.++++++||++.+||.||+++.++.++.|||+|++|||+|.+|||+||||+++|.+|.++...+
T Consensus 317 tAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGIdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~~ 396 (1033)
T KOG4266|consen 317 TANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVST 396 (1033)
T ss_pred ccCcEEEEEecCCCCcceeecCCcccccceeeeccccccchhhhhccCCcceeecCCcccccCCceEeeccccccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeCCchhHHHHHHHHHHHHHHhCCCCCcCCCCCHHHHHHHHHhccccCCCCCCCCccccccCHHHHHHHHHhcCCCc
Q 040133 393 GCKSLSGTSVASPVVAGVVCLLVSVIPENNRKNILNPASMKQALVEGAAKLSGPNMYEQGAGRVDLLESYEILKNYQPRA 472 (1013)
Q Consensus 393 ~y~~~sGTSmAAP~VAGvaALLls~~P~~~~~~~ltp~~VK~~L~~TA~~~~~~~~~~~G~G~lna~~Av~~l~~~~p~~ 472 (1013)
+|...||||+|+|+|||+++|+.|.- ..+...++|+.+|++|+++|.+++++++++||+|++|+.+++++++.|+|.+
T Consensus 397 GCr~LSGTSVaSPVVAGav~LLvS~~--~qk~dl~NPASmKQaLiegA~kLpg~NMfEQGaGkldLL~syqiL~SYkP~a 474 (1033)
T KOG4266|consen 397 GCRSLSGTSVASPVVAGAVCLLVSVE--AQKKDLLNPASMKQALIEGAAKLPGPNMFEQGAGKLDLLESYQILKSYKPRA 474 (1033)
T ss_pred cchhccCCcccchhhhceeeeEeeeh--eehhhccCHHHHHHHHHhHHhhCCCCchhhccCcchhHHHHHHHHHhcCCCc
Confidence 99999999999999999999999953 2345679999999999999999999999999999999999999999999999
Q ss_pred ccCCcccccCCCCCCCCcccccccCCCccEEEEEEeecCC------------------CCCeeEEEEEcceeeeecccEE
Q 040133 473 SIFPSVLDYTDCPYSWPFCRQPLYAGAMPVIFNVTILNGW------------------EGNLLNIRFTYSEVIWPWTGYL 534 (1013)
Q Consensus 473 ~~~p~~l~~~~~~~~~p~~~~~~~~g~~pvt~n~ti~n~~------------------~g~~~~v~~s~s~v~~p~~G~~ 534 (1013)
+++|+.+|+++|||+||||+|++|+|.+|+++|+||+|+| .|+.++|.+.+++|.|||+|++
T Consensus 475 sl~PsylD~t~cpYmWPycsQPlYyG~mp~i~NvTILNGmgVtg~Iv~~P~W~P~~e~qG~~l~v~f~ys~viWPWtGyl 554 (1033)
T KOG4266|consen 475 SLFPSYLDYTDCPYMWPYCSQPLYYGAMPIIFNVTILNGMGVTGYIVSPPTWHPANEEQGNLLSVHFKYSDVIWPWTGYL 554 (1033)
T ss_pred eecchhcccccCcccCccccCccccCCcceEEEEEEecccceeeEecCCCCCccCccccCceEEEEEecCCcccccccce
Confidence 9999999999999999999999999999999999999999 5899999999999999999999
Q ss_pred EEEEEEcCCCccceeeEEeEEEEEEEcCCCCCCCCCcceeEEEEEEEEEecCCCCCCcceeeeeeecCCCCCCCcCCCCC
Q 040133 535 ALHMQIKEEGAKFSGEIEGNVSVSVHSPPARGEKSSRRCTCMLQLKLKVVPTPPRSKRVLWDQFHSIKYPPGYIPRDSLD 614 (1013)
Q Consensus 535 ~v~vtv~~~~~~f~g~~~G~v~~tv~s~~~~~~~~~~~~~~~~~v~v~v~p~p~r~~r~l~dq~h~~~yp~g~~prd~l~ 614 (1013)
+++++|+.++++|+|+++|+|+++|+||+..+++.+++++|.+|++++|+|||||+|||||||||++||||||||||+|+
T Consensus 555 a~~i~vkkega~feG~~~G~vtv~v~Sp~~t~~~~~~~stv~lplk~KviPtPPR~KRiLWDQyHslrYPPgYiPRD~L~ 634 (1033)
T KOG4266|consen 555 ALHIQVKKEGAQFEGEIEGNVTVKVYSPPATGESGPRRSTVSLPLKLKVIPTPPRAKRILWDQYHSLRYPPGYIPRDSLD 634 (1033)
T ss_pred EEEEEeeeccccceeEeeeeEEEEEecCcccCCCCCceeEEeeeeEEEeccCCCcccchhhhhhccccCCCCCCCccccc
Confidence 99999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCCCCCcHHHHHHHHHHcCeEEEEcCCccccccCCCceeEEEecCCCcCCHHHHHHHHHHHhhCCCcEEEE
Q 040133 615 VRSDILDWHGDHLHTNFHIMFNMLRDAGYYVETLGSPFTCFDAHQYGTLMLVDLEDEYFEEEIEKLSYDVLNTGLGLAVF 694 (1013)
Q Consensus 615 ~~~~~~d~~~dh~~tn~~~~~~~l~~~g~~~e~l~~~~tcf~~~~y~~l~~vd~e~~~~~~e~~~l~~~v~~~~l~~~v~ 694 (1013)
+|+|||||+|||||||||+||+|||++||||||||+|||||||++||||||||+|++||||||+||++||.++||+|+||
T Consensus 635 vknDpLDW~gDHiHTNFrdMY~hLR~~GYyievLg~PfTCFdAsqYGtLLmVD~E~~yfpEEI~kLr~dV~n~GL~lVvF 714 (1033)
T KOG4266|consen 635 VKNDPLDWHGDHIHTNFRDMYNHLRDAGYYIEVLGSPFTCFDASQYGTLLMVDLEDDYFPEEIEKLRDDVINTGLGLVVF 714 (1033)
T ss_pred ccCCccccccccccccHHHHHHHHHhcceehhhhcCCceeccHhHCceEEEEccccccCHHHHHHHHHHHHhcCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccccceeecccCCCCccccccCCCCCchhhhhhcccccceecCeEEeeeEEeCCeeeEeecCCceeecCCCCeee
Q 040133 695 SEWYNVETMVKMRFFDDNTRSWWTPVTGGANIPALNDLLAPFGIAFGDKILNGDFSLNGEQSRYASGTDIVRFPGGGNVH 774 (1013)
Q Consensus 695 ~dwy~~~~~~~~~f~d~~~~~~w~p~~gg~n~paln~ll~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~~~~fp~~~~~~ 774 (1013)
|||||+++|+|||||||||||||||+||||||||||+||++|||+|||+++||+|+|++|+|||||||+|++||++|+||
T Consensus 715 ~dWYNt~vM~K~kFfDeNTRqWWtPdTGGANIPALN~LL~~fgiaFgD~i~eG~F~l~~h~myYASG~~IvkFP~~G~~~ 794 (1033)
T KOG4266|consen 715 ADWYNTDVMVKMKFFDENTRQWWTPDTGGANIPALNNLLASFGIAFGDKILEGDFSLDGHQMYYASGTNIVKFPAGGFLH 794 (1033)
T ss_pred eccccceeeeeeeeeccCcceeccCCCCCcCcHhHHHHHhhhccccccceecceeeecCceeeeecCCeEEEccCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccccccccccccccCCCCCcccceecCcc---eEEEEecCccccCCCCCCCcHHHHHHHHHHHhcCCCCCcc
Q 040133 775 SFPFLDTTESGATQNVLTSSTTKADSPILGLLEVGEG---RIAVYGDSNCLDSSHMVTNCYWLLRKILDFTSANIRDSVL 851 (1013)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~gds~cld~~~~~~~c~~l~~~~~~~~~~~~~~~~~ 851 (1013)
.++|+||++|+++|+.+. ...++++|||||+|.++| ||+|||||||||++|++++|||||+++|+|.+.++.+|++
T Consensus 795 t~~l~Dqgls~~~q~t~~-~a~kedvpilGl~qi~a~s~~rivvygdSNcld~sh~~~~cfwll~~lL~~~s~~i~~p~f 873 (1033)
T KOG4266|consen 795 TFPLLDQGLSGATQNTLL-EASKEDVPILGLLQIGAGSNERIVVYGDSNCLDSSHMVTNCFWLLKKLLDFSSSNIKDPVF 873 (1033)
T ss_pred eeeecccchhhhcccchh-hhhhccCceeEEEEecCCCCceEEEecCccccccccchhhHHHHHHHHHhhhhcCCCCchh
Confidence 999999999999998754 667899999999997654 9999999999999999999999999999999999999997
Q ss_pred ccCCCCCCCCCCCCCCCCCcccCCCCcceeeeeecCCcccCCCCcceeeccccccccCCCCCCCCCCCCccccCcccccc
Q 040133 852 FSDSSKHDTPLVEDDNQLPSRRTDVNFSSYSAVVGKDLACRSDSRFEVWGTKGYNLDVREGDKRKPGYPVFHVGRGFNST 931 (1013)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~n~~ 931 (1013)
. ..+.+..|.......+|+||+++||++||+||+++++|+++ |||+|++|+|.+++++.++++|++..++|++.||.+
T Consensus 874 s-ks~nr~~p~~g~~~v~p~r~~~~~~~~yS~vl~~~l~~~~~-r~~~ac~~~~wl~~~~ln~~~ps~H~~~L~~~Ln~~ 951 (1033)
T KOG4266|consen 874 S-KSANRYSPVIGDEKVLPSRRTDVNFSTYSSVLGKELICESD-RFEVACTKGYWLHVRGLNRRLPSYHGIDLGRGLNFT 951 (1033)
T ss_pred c-ccccccCCCcccccccccccccccchhhhhhhhhhhcCCCc-CcccccccccccceecccccCcchhhhhhhcCccce
Confidence 5 44555556656778999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred cccccccCCccc---cc---CcccccCccccccccccCCCCCcccccchhHHHHHHHHHHHHhhhhhhhhhhhhccccCC
Q 040133 932 MDISKSRRPKYT---QI---NKSDYLGSKYLGLIYGEELDMPVLVASHWLIPAVVAVTGVLVFLSFWRIRQKRRRRRKGS 1005 (1013)
Q Consensus 932 ~~~~~~~~~~~~---~~---~~~~~~~~~~~g~~~~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1005 (1013)
.++....+-+.. +. ...+.+| |...++|+|||.+++.+|.+-+.+++.+++++++.||+||||+|||+.+
T Consensus 952 ve~~~~~r~~~~~~~~~~~s~~~~~~g----g~~~r~~~~~~~~~p~~~~~~a~vV~~~~~v~i~i~~~r~kr~~~r~~~ 1027 (1033)
T KOG4266|consen 952 VESKRPTRWRSAKEGGELSSSRSKSLG----GLFNRDEIDMPFLVPTRWIVLAGVVASGVLVLLSIWRIRQKRGRRRRAS 1027 (1033)
T ss_pred ecccccccccccccCCccccccccCCC----CccccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhhhcCCceecC
Confidence 987665543322 11 1223334 8888999999999999999999999999999999999999999999999
Q ss_pred CCcCcc
Q 040133 1006 GTLRLA 1011 (1013)
Q Consensus 1006 ~~~~~~ 1011 (1013)
.+.|++
T Consensus 1028 ~~~~~~ 1033 (1033)
T KOG4266|consen 1028 GSNRLA 1033 (1033)
T ss_pred cccccC
Confidence 888864
No 2
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=2.2e-53 Score=462.10 Aligned_cols=255 Identities=74% Similarity=1.297 Sum_probs=238.6
Q ss_pred hhCCCCCCCcEEEEEcCCCCCCCCCcccccccccCCCCCCCCCCCCCcchhhhhhhccCCCcccccCCCeEEEEEEecCC
Q 040133 189 WGKGYTGAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDTLNDNLGHGTFVAGVVAGQDAECLGFAPDTEIYAFRVFTDA 268 (1013)
Q Consensus 189 W~~g~tG~GV~VaVIDTGId~~Hpdl~~i~~~~~~~~~~~~~D~~gHGThVAGIIAg~~~~~~GVAP~A~I~~vrV~~~~ 268 (1013)
|++|++|+||+||||||||+.+||+|+++....+|.+++...|..||||||||||++..+++.||||+|+|+.+|++++.
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~~~~~~~~~~~~~d~~gHGT~VAGiIa~~~~~~~GvAp~a~l~~~~v~~~~ 80 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVKERTNWTNEKTLDDGLGHGTFVAGVIASSREQCLGFAPDAEIYIFRVFTNN 80 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccccccccCCCCCCCCCCCcHHHHHHHHHccCCCceeECCCCEEEEEEeecCC
Confidence 89999999999999999999999999988888888887777888999999999999988788999999999999999888
Q ss_pred CCCchHHHHHHHHHHHhCCCeEEEecCCCCCCCChHHHHHHHHHhcCCeEEEEeccCCCCCCCCCCCCCCCCCceEEeee
Q 040133 269 QVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYLDLPFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGI 348 (1013)
Q Consensus 269 g~~~~s~il~Ai~~Ai~~gadVINlS~G~~~~~~~~~~~ai~~a~~~GIivVaAAGN~G~~~~~i~~PA~~~~VItVGAv 348 (1013)
+.+..++++++++||++++++|||||||++...+.++.+++.++.++|++||+||||+|+.+++..+|++.+++|+|||+
T Consensus 81 ~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~ 160 (255)
T cd07479 81 QVSYTSWFLDAFNYAILTKIDVLNLSIGGPDFMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGI 160 (255)
T ss_pred CCchHHHHHHHHHhhhhcCCCEEEeeccCCCCCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeee
Confidence 77788999999999999999999999999876667888899999999999999999999887788899999999999999
Q ss_pred ecCCCccccCCCCCCccccCCCCCCCcceEEecCCceeeecCCCCeeeeCCchhHHHHHHHHHHHHHHhCCCCCcCCCCC
Q 040133 349 DYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASPVVAGVVCLLVSVIPENNRKNILN 428 (1013)
Q Consensus 349 d~~g~~a~fSs~G~st~~~P~~~G~~KpDI~APG~~I~St~~~~~y~~~sGTSmAAP~VAGvaALLls~~P~~~~~~~lt 428 (1013)
+.+++++.|||+|+++|.+|.++|+.||||+|||.+|.++...++|..++|||||||+|||++|||++++|+ +...++
T Consensus 161 ~~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~~~~~~~sGTS~AaP~VaG~aAll~s~~p~--~~~~~~ 238 (255)
T cd07479 161 DFDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLKGGCRALSGTSVASPVVAGAVALLLSTVPE--KRDLIN 238 (255)
T ss_pred ccCCccccccCCCCCcccccCCCCCcCccEEecCCCeeccccCCCeEEeccHHHHHHHHHHHHHHHHHhCcc--ccCCCC
Confidence 999999999999999999999999999999999999999988899999999999999999999999999995 334599
Q ss_pred HHHHHHHHHhccccCCC
Q 040133 429 PASMKQALVEGAAKLSG 445 (1013)
Q Consensus 429 p~~VK~~L~~TA~~~~~ 445 (1013)
|++||++|++||+++++
T Consensus 239 p~~vk~~L~~sA~~~~~ 255 (255)
T cd07479 239 PASMKQALIESATRLPG 255 (255)
T ss_pred HHHHHHHHHhhcccCCC
Confidence 99999999999998753
No 3
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=7.9e-49 Score=461.23 Aligned_cols=285 Identities=19% Similarity=0.275 Sum_probs=234.0
Q ss_pred cccccccCCccccccccccccccccccCchhhhhC--CCCCCCcEEEEEcCCCCCCCCCccccc----------------
Q 040133 157 YTATTSNCTINWRRHLLMQRSQVTSLFGADALWGK--GYTGAKVKMAIFDTGIRENHPHFRNIK---------------- 218 (1013)
Q Consensus 157 ~~~~~~~~~~~W~l~~~~~~~~~~~~i~a~~aW~~--g~tG~GV~VaVIDTGId~~Hpdl~~i~---------------- 218 (1013)
+.++++....||+++. ++++++|+. +.+|+||+|||||||||++||||.+..
T Consensus 285 ~~~ND~~~~~qWgLd~----------i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~el~GrdgiDdD 354 (639)
T PTZ00262 285 YQFNDEGRNLQWGLDL----------TRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNVKELHGRKGIDDD 354 (639)
T ss_pred cccCCCCcccCcCcch----------hCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccccccccCccccccc
Confidence 4456777778888775 578888874 578999999999999999999998422
Q ss_pred --------ccccCCCC-CCCCCCCCCcchhhhhhhccCC---CcccccCCCeEEEEEEecCCCCCchHHHHHHHHHHHhC
Q 040133 219 --------ERTNWTNE-DTLNDNLGHGTFVAGVVAGQDA---ECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIAT 286 (1013)
Q Consensus 219 --------~~~~~~~~-~~~~D~~gHGThVAGIIAg~~~---~~~GVAP~A~I~~vrV~~~~g~~~~s~il~Ai~~Ai~~ 286 (1013)
.+++|.++ ..+.|..||||||||||||.++ ++.||||+|+|+++|+++..+.+..+++++||+||+++
T Consensus 355 ~nG~vdd~~G~nfVd~~~~P~D~~GHGTHVAGIIAA~gnN~~Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~ 434 (639)
T PTZ00262 355 NNGNVDDEYGANFVNNDGGPMDDNYHGTHVSGIISAIGNNNIGIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISR 434 (639)
T ss_pred cCCcccccccccccCCCCCCCCCCCcchHHHHHHhccccCCCceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHC
Confidence 12333332 3457889999999999999754 37899999999999999988888999999999999999
Q ss_pred CCeEEEecCCCCCCCChHHHHHHHHHhcCCeEEEEeccCCCCCCC------------CCCCCC----CCCCceEEeeeec
Q 040133 287 NIDVLNLSIGGPDYLDLPFIEKIWEITANNIIMVSAIGNDGPLYG------------TLNNPA----DQSDVIGVGGIDY 350 (1013)
Q Consensus 287 gadVINlS~G~~~~~~~~~~~ai~~a~~~GIivVaAAGN~G~~~~------------~i~~PA----~~~~VItVGAvd~ 350 (1013)
|++|||||||+..+ ...+.+++.+|.++|+++|+||||+|.... ...+|+ ..++||+|||++.
T Consensus 435 GA~VINmSlG~~~~-s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~ 513 (639)
T PTZ00262 435 EAHMINGSFSFDEY-SGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIK 513 (639)
T ss_pred CCCEEEeccccCCc-cHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccC
Confidence 99999999998654 446788999999999999999999985321 123666 4689999999976
Q ss_pred CCC----ccccCCCCCCccccCCCCCCCcceEEecCCceeeecCCCCeeeeCCchhHHHHHHHHHHHHHHhCCCCCcCCC
Q 040133 351 NDH----IASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASPVVAGVVCLLVSVIPENNRKNI 426 (1013)
Q Consensus 351 ~g~----~a~fSs~G~st~~~P~~~G~~KpDI~APG~~I~St~~~~~y~~~sGTSmAAP~VAGvaALLls~~P~~~~~~~ 426 (1013)
+.. .+.+|++| ..++||+|||.+|+++.++++|..++|||||||||||+||||++++|+
T Consensus 514 d~~~~~s~s~~Snyg-----------~~~VDIaAPG~dI~St~p~g~Y~~~SGTSmAAP~VAGvAALLlS~~P~------ 576 (639)
T PTZ00262 514 DKNNQYSLSPNSFYS-----------AKYCQLAAPGTNIYSTFPKNSYRKLNGTSMAAPHVAAIASLILSINPS------ 576 (639)
T ss_pred CCCCcccccccccCC-----------CCcceEEeCCCCeeeccCCCceeecCCCchhHHHHHHHHHHHHhhCCC------
Confidence 321 22344444 337999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhccccCCCCCCCCccccccCHHHHHHHHHhcC
Q 040133 427 LNPASMKQALVEGAAKLSGPNMYEQGAGRVDLLESYEILKNYQ 469 (1013)
Q Consensus 427 ltp~~VK~~L~~TA~~~~~~~~~~~G~G~lna~~Av~~l~~~~ 469 (1013)
+++++|+++|.+||.+++.......++|+||+.+|++++....
T Consensus 577 LT~~qV~~iL~~TA~~l~~~~n~~~wgG~LDa~kAV~~Ai~~~ 619 (639)
T PTZ00262 577 LSYEEVIRILKESIVQLPSLKNKVKWGGYLDIHHAVNLAIASK 619 (639)
T ss_pred CCHHHHHHHHHHhCccCCCCCCccccCcEEcHHHHHHHHHhcc
Confidence 9999999999999998876554434458999999999877654
No 4
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=5e-45 Score=400.79 Aligned_cols=251 Identities=25% Similarity=0.294 Sum_probs=204.0
Q ss_pred CCCCCCcEEEEEcCCCCCCCC--------CcccccccccCCCCCCCCCCCCCcchhhhhhhccCCCcccccCCCeEEEEE
Q 040133 192 GYTGAKVKMAIFDTGIRENHP--------HFRNIKERTNWTNEDTLNDNLGHGTFVAGVVAGQDAECLGFAPDTEIYAFR 263 (1013)
Q Consensus 192 g~tG~GV~VaVIDTGId~~Hp--------dl~~i~~~~~~~~~~~~~D~~gHGThVAGIIAg~~~~~~GVAP~A~I~~vr 263 (1013)
|++|+||+|||||||||.+|| +|....... .......|..+|||||||+|+ ||||+|+|+.++
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~~~~--~~~~~~~d~~gHGT~vAgii~-------GvAP~a~l~~~~ 71 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLPGNVNVL--GDLDGGSGGGDEGRAMLEIIH-------DIAPGAELAFHT 71 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCCcceeec--cccCCCCCCCchHHHHHHHHh-------ccCCCCEEEEEe
Confidence 579999999999999999766 443211111 112345678899999999994 899999999988
Q ss_pred EecCCCCCchHHHHHHHHHHHhCCCeEEEecCCCCCC---CChHHHHHHHHHhcC-CeEEEEeccCCCCCCCCCCCCCCC
Q 040133 264 VFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDY---LDLPFIEKIWEITAN-NIIMVSAIGNDGPLYGTLNNPADQ 339 (1013)
Q Consensus 264 V~~~~g~~~~s~il~Ai~~Ai~~gadVINlS~G~~~~---~~~~~~~ai~~a~~~-GIivVaAAGN~G~~~~~i~~PA~~ 339 (1013)
+.. ..+++++||+|++++|++|||||||.... .+..+.+++.++.++ |+++|+||||+|.. .++.+|+.+
T Consensus 72 ~~~-----~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~-~~~~~Pa~~ 145 (275)
T cd05562 72 AGG-----GELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQS-GSIFGHAAA 145 (275)
T ss_pred cCC-----CHHHHHHHHHHHHHcCCCEEEecccccCCCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCC-CCccCCCCC
Confidence 642 36789999999999999999999997532 234577888888887 99999999999984 567789999
Q ss_pred CCceEEeeeecCCCccccCCC---------CCCccccCCCCCCCcceEEecCC-ceeeecCCCCeeeeCCchhHHHHHHH
Q 040133 340 SDVIGVGGIDYNDHIASFSSR---------GMSTWEIPHGYGRVKPDVVAYGR-EIMGSKISTGCKSLSGTSVASPVVAG 409 (1013)
Q Consensus 340 ~~VItVGAvd~~g~~a~fSs~---------G~st~~~P~~~G~~KpDI~APG~-~I~St~~~~~y~~~sGTSmAAP~VAG 409 (1013)
+++|+|||++.++....||+. +......|+..++.||||+|||+ ++.++..++.|..++|||||||||||
T Consensus 146 ~~vitVgA~~~~~~~~~~s~~~~~~~~s~~~~~~~~~p~~~~~~~~di~Apgg~~~~~~~~~~~~~~~sGTS~AaP~VaG 225 (275)
T cd05562 146 PGAIAVGAVDYGNTPAFGSDPAPGGTPSSFDPVGIRLPTPEVRQKPDVTAPDGVNGTVDGDGDGPPNFFGTSAAAPHAAG 225 (275)
T ss_pred CCeEEEEeeccCCCcccccccccCCCcccccCCcccCcCCCCCcCCeEEcCCcccccCCCcCCceeecccchHHHHHHHH
Confidence 999999999998877755432 11112236667889999999975 45777778889999999999999999
Q ss_pred HHHHHHHhCCCCCcCCCCCHHHHHHHHHhccccCCCC-CCCCccccccCHHHHHH
Q 040133 410 VVCLLVSVIPENNRKNILNPASMKQALVEGAAKLSGP-NMYEQGAGRVDLLESYE 463 (1013)
Q Consensus 410 vaALLls~~P~~~~~~~ltp~~VK~~L~~TA~~~~~~-~~~~~G~G~lna~~Av~ 463 (1013)
++|||++++|+ +++++||++|++||+++... ....+|||+||+.+|++
T Consensus 226 ~aALl~~~~p~------lt~~~v~~~L~~tA~~~~~~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 226 VAALVLSANPG------LTPADIRDALRSTALDMGEPGYDNASGSGLVDADRAVA 274 (275)
T ss_pred HHHHHHHhCCC------CCHHHHHHHHHHhCcccCCCCCCCCcCcCcccHHHHhh
Confidence 99999999999 99999999999999988542 23478999999999986
No 5
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.3e-44 Score=403.46 Aligned_cols=267 Identities=34% Similarity=0.501 Sum_probs=226.0
Q ss_pred CchhhhhCCCCCCCcEEEEEcCCCCCCCCCcccc-------cccccCCC-----------CCCCCCCCCCcchhhhhhhc
Q 040133 184 GADALWGKGYTGAKVKMAIFDTGIRENHPHFRNI-------KERTNWTN-----------EDTLNDNLGHGTFVAGVVAG 245 (1013)
Q Consensus 184 ~a~~aW~~g~tG~GV~VaVIDTGId~~Hpdl~~i-------~~~~~~~~-----------~~~~~D~~gHGThVAGIIAg 245 (1013)
+++++|+.|++|+||+|||||+||+.+||+|.+. ...+++.. ...+.|..+|||||||+|++
T Consensus 1 ~v~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~ 80 (312)
T cd07489 1 GVDKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGPGCKVAGGYDFVGDDYDGTNPPVPDDDPMDCQGHGTHVAGIIAA 80 (312)
T ss_pred ChhhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCCCceeccccccCCcccccccCCCCCCCCCCCCCcHHHHHHHHhc
Confidence 4678999999999999999999999999999742 22233321 12345668999999999999
Q ss_pred cCCC--cccccCCCeEEEEEEecCCCCCchHHHHHHHHHHHhCCCeEEEecCCCCC-CCChHHHHHHHHHhcCCeEEEEe
Q 040133 246 QDAE--CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPD-YLDLPFIEKIWEITANNIIMVSA 322 (1013)
Q Consensus 246 ~~~~--~~GVAP~A~I~~vrV~~~~g~~~~s~il~Ai~~Ai~~gadVINlS~G~~~-~~~~~~~~ai~~a~~~GIivVaA 322 (1013)
..++ ..||||+|+|+.+|+++..+....+.+++++++|++++++|||+|||.+. .....+.+.+.++.++|+++|+|
T Consensus 81 ~~~~~~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~~~~~~~~~~~~~~~~~~~gv~iv~a 160 (312)
T cd07489 81 NPNAYGFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGPSGWSEDPWAVVASRIVDAGVVVTIA 160 (312)
T ss_pred CCCCCceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCcCCCCCCCHHHHHHHHHHHCCCEEEEE
Confidence 8763 68999999999999998777778888999999999999999999999764 33456677888889999999999
Q ss_pred ccCCCCCCC-CCCCCCCCCCceEEeeeecCCCccccCCCCCCccccCCCCCCCcceEEecCCceeeecCCCC--eeeeCC
Q 040133 323 IGNDGPLYG-TLNNPADQSDVIGVGGIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTG--CKSLSG 399 (1013)
Q Consensus 323 AGN~G~~~~-~i~~PA~~~~VItVGAvd~~g~~a~fSs~G~st~~~P~~~G~~KpDI~APG~~I~St~~~~~--y~~~sG 399 (1013)
|||+|.... ...+|+..+++|+||+++ +.||++| |...+..|||++|||.++.++.+.+. |..++|
T Consensus 161 aGN~g~~~~~~~~~p~~~~~vi~Vga~~-----~~~s~~g------~~~~~~~kpdv~ApG~~i~~~~~~~~~~~~~~~G 229 (312)
T cd07489 161 AGNDGERGPFYASSPASGRGVIAVASVD-----SYFSSWG------PTNELYLKPDVAAPGGNILSTYPLAGGGYAVLSG 229 (312)
T ss_pred CCCCCCCCCCcccCCccCCCeEEEEEec-----CCccCCC------CCCCCCcCccEEcCCCCEEEeeeCCCCceEeecc
Confidence 999987422 246799999999999998 7899999 55567889999999999999887765 999999
Q ss_pred chhHHHHHHHHHHHHHHhC-CCCCcCCCCCHHHHHHHHHhccccCCCCC----------CCCccccccCHHHHHHHHHh
Q 040133 400 TSVASPVVAGVVCLLVSVI-PENNRKNILNPASMKQALVEGAAKLSGPN----------MYEQGAGRVDLLESYEILKN 467 (1013)
Q Consensus 400 TSmAAP~VAGvaALLls~~-P~~~~~~~ltp~~VK~~L~~TA~~~~~~~----------~~~~G~G~lna~~Av~~l~~ 467 (1013)
||||||+|||++||+++++ |. +++.+|+++|++||..+...+ ..++|||+||+.+|++....
T Consensus 230 TS~Aap~vaG~~Al~~~~~~~~------~~~~~v~~~l~~ta~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~a~~~~~~ 302 (312)
T cd07489 230 TSMATPYVAGAAALLIQARHGK------LSPAELRDLLASTAKPLPWSDGTSALPDLAPVAQQGAGLVNAYKALYATTT 302 (312)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC------CCHHHHHHHHHHhCccccccCCCccccCCCCHhhcCcceeeHHHHhcCCcc
Confidence 9999999999999999999 88 999999999999998764322 24689999999999984433
No 6
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.7e-45 Score=408.01 Aligned_cols=240 Identities=30% Similarity=0.425 Sum_probs=186.4
Q ss_pred CCCcEEEEEcCCCCCCCCCccccc---------------ccccCCCC--CCCCCCCCCcchhhhhhhccCC---------
Q 040133 195 GAKVKMAIFDTGIRENHPHFRNIK---------------ERTNWTNE--DTLNDNLGHGTFVAGVVAGQDA--------- 248 (1013)
Q Consensus 195 G~GV~VaVIDTGId~~Hpdl~~i~---------------~~~~~~~~--~~~~D~~gHGThVAGIIAg~~~--------- 248 (1013)
|+||+|||||||||.+||||.... .+.++... ....|.+||||||||||||..+
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~~~~~~~d~~~~~~~g~d~~~~~~~~~~D~~gHGThvAGiiag~~~~~~~~~~~~ 80 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNFSWKLKFDYKAYLLPGMDKWGGFYVIMYDFFSHGTSCASVAAGRGKMEYNLYGYT 80 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCCCcccccCcCCCccCCcCCCCCccCCCCCccccchhHHHHHhccCcccccccccc
Confidence 799999999999999999997321 11122211 2356889999999999999753
Q ss_pred ---CcccccCCCeEEEEEEecCCCCCchHHHHH-------HHHH--HHhCCCeEEEecCCCCCCCC------hHHHHHHH
Q 040133 249 ---ECLGFAPDTEIYAFRVFTDAQVSYTSWFLD-------AFNY--AIATNIDVLNLSIGGPDYLD------LPFIEKIW 310 (1013)
Q Consensus 249 ---~~~GVAP~A~I~~vrV~~~~g~~~~s~il~-------Ai~~--Ai~~gadVINlS~G~~~~~~------~~~~~ai~ 310 (1013)
.+.||||+|+|+++|++...+......+.. +++| +.+++++|||||||...... ......+.
T Consensus 81 ~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~~~~~~~~~g~~~~~~~~ 160 (311)
T cd07497 81 GKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYAPGLDISSLVI 160 (311)
T ss_pred cccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCCCCccccccCcCHHHHHH
Confidence 358999999999999997544332222222 3344 34689999999999753211 11122222
Q ss_pred H-H-hcCCeEEEEeccCCCCCCCCCCCCCCCCCceEEeeeec---------------CCCccccCCCCCCccccCCCCCC
Q 040133 311 E-I-TANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDY---------------NDHIASFSSRGMSTWEIPHGYGR 373 (1013)
Q Consensus 311 ~-a-~~~GIivVaAAGN~G~~~~~i~~PA~~~~VItVGAvd~---------------~g~~a~fSs~G~st~~~P~~~G~ 373 (1013)
+ + .++|+++|+||||+|+..+++.+|+.++++|+|||++. .+.++.||++| |..+|+
T Consensus 161 d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~fSs~G------p~~~g~ 234 (311)
T cd07497 161 DALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFYLFGYLPGGSGDVVSWSSRG------PSIAGD 234 (311)
T ss_pred HHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchhhhccccCCCCCccccccCC------CCcccC
Confidence 2 2 37899999999999998788999999999999999974 35778999999 667899
Q ss_pred CcceEEecCCceeeecCC----------CCeeeeCCchhHHHHHHHHHHHHHHhCCCCCcCCCCCHHHHHHHHHhcc
Q 040133 374 VKPDVVAYGREIMGSKIS----------TGCKSLSGTSVASPVVAGVVCLLVSVIPENNRKNILNPASMKQALVEGA 440 (1013)
Q Consensus 374 ~KpDI~APG~~I~St~~~----------~~y~~~sGTSmAAP~VAGvaALLls~~P~~~~~~~ltp~~VK~~L~~TA 440 (1013)
+||||+|||.+|+++.+. ..|..++|||||||||||++|||+|++|+......++|++||++|++||
T Consensus 235 ~kPdv~ApG~~i~s~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 235 PKPDLAAIGAFAWAPGRVLDSGGALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred CCCceeccCcceEeecccCCCCcccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 999999999999887543 2588999999999999999999999998743333599999999999997
No 7
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=3.2e-44 Score=392.86 Aligned_cols=246 Identities=27% Similarity=0.387 Sum_probs=210.8
Q ss_pred hhhCCCCCCCcEEEEEcCCCCCCCCCcccccc--cccC-CCCCCCCCCCCCcchhhhhhhccCC-CcccccCCCeEEEEE
Q 040133 188 LWGKGYTGAKVKMAIFDTGIRENHPHFRNIKE--RTNW-TNEDTLNDNLGHGTFVAGVVAGQDA-ECLGFAPDTEIYAFR 263 (1013)
Q Consensus 188 aW~~g~tG~GV~VaVIDTGId~~Hpdl~~i~~--~~~~-~~~~~~~D~~gHGThVAGIIAg~~~-~~~GVAP~A~I~~vr 263 (1013)
+|+.|++|+||+|||||+|++.+||+|++... ...+ ...+...|..+|||||||+|+|..+ +..||||+|+|+.+|
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~~~~~~~~~~~~~~gHGT~VAgii~g~~~~~~~GvAp~a~i~~~~ 81 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLFTYAAAACQDGGASAHGTHVASLIFGQPCSSVEGIAPLCRGLNIP 81 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccccCccccCCCCCCCCCcHHHHHHHHhcCCCCCceeECcCCeEEEEE
Confidence 79999999999999999999999999986321 1111 2234456778999999999998764 478999999999999
Q ss_pred EecCCCCCc-hHHHHHHHHHHHhCCCeEEEecCCCCCC---CChHHHHHHHHHhcCCeEEEEeccCCCCCCCCCCCCCCC
Q 040133 264 VFTDAQVSY-TSWFLDAFNYAIATNIDVLNLSIGGPDY---LDLPFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQ 339 (1013)
Q Consensus 264 V~~~~g~~~-~s~il~Ai~~Ai~~gadVINlS~G~~~~---~~~~~~~ai~~a~~~GIivVaAAGN~G~~~~~i~~PA~~ 339 (1013)
++...+... ...+++||+||+++|++|||||||.... ....+.+++.++.++|+++|+||||+|. ....+|+..
T Consensus 82 v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~--~~~~~Pa~~ 159 (267)
T cd07476 82 IFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGC--ACLHVPAAL 159 (267)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCC--CCCCCcccC
Confidence 997765443 6789999999999999999999996532 3456778888899999999999999997 456789999
Q ss_pred CCceEEeeeecCCCccccCCCCCCccccCCCCCCCcceEEecCCceeeecCCCCeeeeCCchhHHHHHHHHHHHHHHhCC
Q 040133 340 SDVIGVGGIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASPVVAGVVCLLVSVIP 419 (1013)
Q Consensus 340 ~~VItVGAvd~~g~~a~fSs~G~st~~~P~~~G~~KpDI~APG~~I~St~~~~~y~~~sGTSmAAP~VAGvaALLls~~P 419 (1013)
+++|+|||++.++.+..||++|+. ..++||+|||.+|.++.+++.|..++|||||||+|||++|||+|.+|
T Consensus 160 ~~vi~Vga~~~~~~~~~~s~~g~~---------~~~~~l~ApG~~i~~~~~~~~~~~~sGTS~AaP~vaG~aALl~s~~~ 230 (267)
T cd07476 160 PSVLAVGAMDDDGLPLKFSNWGAD---------YRKKGILAPGENILGAALGGEVVRRSGTSFAAAIVAGIAALLLSLQL 230 (267)
T ss_pred CceEEEEeecCCCCeeeecCCCCC---------CCCceEEecCCCceeecCCCCeEEeccHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999942 23789999999999999999999999999999999999999999998
Q ss_pred CCCcCCCCCHHHHHHHHHhccccCCCC
Q 040133 420 ENNRKNILNPASMKQALVEGAAKLSGP 446 (1013)
Q Consensus 420 ~~~~~~~ltp~~VK~~L~~TA~~~~~~ 446 (1013)
+ ....+++++||++|++||+++...
T Consensus 231 ~--~~~~~~~~~vk~~L~~tA~~~~~~ 255 (267)
T cd07476 231 R--RGAPPDPLAVRRALLETATPCDPE 255 (267)
T ss_pred h--hCCCCCHHHHHHHHHHhCccCCCc
Confidence 6 334589999999999999998654
No 8
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.7e-44 Score=383.36 Aligned_cols=235 Identities=28% Similarity=0.422 Sum_probs=203.4
Q ss_pred cEEEEEcCCCCCCCCCcccccccccCCCCCCCCCCCCCcchhhhhhhccCCCcccccCCCeEEEEEEecCCC---CCchH
Q 040133 198 VKMAIFDTGIRENHPHFRNIKERTNWTNEDTLNDNLGHGTFVAGVVAGQDAECLGFAPDTEIYAFRVFTDAQ---VSYTS 274 (1013)
Q Consensus 198 V~VaVIDTGId~~Hpdl~~i~~~~~~~~~~~~~D~~gHGThVAGIIAg~~~~~~GVAP~A~I~~vrV~~~~g---~~~~s 274 (1013)
|+||||||||+.+||+|++......+.......|..+|||||||||++..++..||||+|+|+.+|++...+ ....+
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~~~~~~~~~~~~~~~~HGT~vAgiia~~~~~~~Gvap~a~i~~~~v~~~~~~~~~~~~~ 80 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVIARLFFAGPGAPAPSAHGTAVASLLAGAGAQRPGLLPGADLYGADVFGRAGGGEGASAL 80 (239)
T ss_pred CEEEEEeCCCCCCCcccccCccccccCCCCCCCCCCCCHHHHHHHHhCCCCCCcccCCCCEEEEEEEecCCCCCCCcCHH
Confidence 789999999999999997543222222222456788999999999999876668999999999999997642 35678
Q ss_pred HHHHHHHHHHhCCCeEEEecCCCCCCCChHHHHHHHHHhcCCeEEEEeccCCCCCCCCCCCCCCCCCceEEeeeecCCCc
Q 040133 275 WFLDAFNYAIATNIDVLNLSIGGPDYLDLPFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHI 354 (1013)
Q Consensus 275 ~il~Ai~~Ai~~gadVINlS~G~~~~~~~~~~~ai~~a~~~GIivVaAAGN~G~~~~~i~~PA~~~~VItVGAvd~~g~~ 354 (1013)
++++||+||++++++|||||||++. +..+.+++.++.++|+++|+||||+|... ...+|+.++++|+||+++.++.+
T Consensus 81 ~i~~ai~~a~~~g~~VIn~S~g~~~--~~~l~~ai~~a~~~gilvv~AaGN~g~~~-~~~~Pa~~~~vi~V~a~~~~~~~ 157 (239)
T cd05561 81 ALARALDWLAEQGVRVVNISLAGPP--NALLAAAVAAAAARGMVLVAAAGNDGPAA-PPLYPAAYPGVIAVTAVDARGRL 157 (239)
T ss_pred HHHHHHHHHHHCCCCEEEeCCCCCC--CHHHHHHHHHHHHCCCEEEEecCCCCCCC-CccCcccCCCceEEEeecCCCCc
Confidence 8999999999999999999999764 45677888999999999999999999753 45689999999999999999999
Q ss_pred cccCCCCCCccccCCCCCCCcceEEecCCceeeecCCCCeeeeCCchhHHHHHHHHHHHHHHhCCCCCcCCCCCHHHHHH
Q 040133 355 ASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASPVVAGVVCLLVSVIPENNRKNILNPASMKQ 434 (1013)
Q Consensus 355 a~fSs~G~st~~~P~~~G~~KpDI~APG~~I~St~~~~~y~~~sGTSmAAP~VAGvaALLls~~P~~~~~~~ltp~~VK~ 434 (1013)
+.||++|+ ++||+|||.+|.++...++|...+|||||||+|||++||+++++| +++++||+
T Consensus 158 ~~~s~~g~------------~~di~ApG~~i~~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~p-------~~~~~i~~ 218 (239)
T cd05561 158 YREANRGA------------HVDFAAPGVDVWVAAPGGGYRYVSGTSFAAPFVTAALALLLQASP-------LAPDDARA 218 (239)
T ss_pred cccCCCCC------------cceEEccccceecccCCCCEEEeCCHHHHHHHHHHHHHHHHhcCC-------CCHHHHHH
Confidence 99999996 589999999999999999999999999999999999999999987 69999999
Q ss_pred HHHhccccCCCCC-CCCcccc
Q 040133 435 ALVEGAAKLSGPN-MYEQGAG 454 (1013)
Q Consensus 435 ~L~~TA~~~~~~~-~~~~G~G 454 (1013)
+|++||+++.... ...+|||
T Consensus 219 ~L~~ta~~~g~~~~d~~~G~G 239 (239)
T cd05561 219 RLAATAKDLGPPGRDPVFGYG 239 (239)
T ss_pred HHHHHhhccCCCCcCCCcCCC
Confidence 9999999886533 2357887
No 9
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=7.6e-44 Score=402.09 Aligned_cols=269 Identities=31% Similarity=0.479 Sum_probs=220.2
Q ss_pred hhhhCCC-CCCCcEEEEEcCCCCCCCCCcccccc------------------------------cccCCCCC-C---CCC
Q 040133 187 ALWGKGY-TGAKVKMAIFDTGIRENHPHFRNIKE------------------------------RTNWTNED-T---LND 231 (1013)
Q Consensus 187 ~aW~~g~-tG~GV~VaVIDTGId~~Hpdl~~i~~------------------------------~~~~~~~~-~---~~D 231 (1013)
++|+++. +|+||+||||||||+++||+|.+... .++|.+.. . ..+
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNNDDILDEDD 80 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCCccCCCCC
Confidence 4799987 99999999999999999999984211 12333222 1 336
Q ss_pred CCCCcchhhhhhhccCC------CcccccCCCeEEEEEEecC--CCCCchHHHHHHHHHHHhCCCeEEEecCCCCCC---
Q 040133 232 NLGHGTFVAGVVAGQDA------ECLGFAPDTEIYAFRVFTD--AQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDY--- 300 (1013)
Q Consensus 232 ~~gHGThVAGIIAg~~~------~~~GVAP~A~I~~vrV~~~--~g~~~~s~il~Ai~~Ai~~gadVINlS~G~~~~--- 300 (1013)
..+|||||||||+|..+ .+.||||+|+|+.+|+++. ........+++|++++++.+++|||||||....
T Consensus 81 ~~~HGT~vagiiag~~~~~~~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~ 160 (346)
T cd07475 81 GSSHGMHVAGIVAGNGDEEDNGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGSTAGFVD 160 (346)
T ss_pred CCCcHHHHHHHHhcCCCccccCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCCCCC
Confidence 78999999999999875 4689999999999999973 555677889999999999999999999997643
Q ss_pred CChHHHHHHHHHhcCCeEEEEeccCCCCCCC--------------CCCCCCCCCCceEEeeee------cCCCccccCCC
Q 040133 301 LDLPFIEKIWEITANNIIMVSAIGNDGPLYG--------------TLNNPADQSDVIGVGGID------YNDHIASFSSR 360 (1013)
Q Consensus 301 ~~~~~~~ai~~a~~~GIivVaAAGN~G~~~~--------------~i~~PA~~~~VItVGAvd------~~g~~a~fSs~ 360 (1013)
....+.+++.++.++|+++|+||||+|.... .+..|+..+++|+||+++ ..+.++.||++
T Consensus 161 ~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~~~~~~~~~~~~~S~~ 240 (346)
T cd07475 161 LDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKKVPNPNGGQMSGFSSW 240 (346)
T ss_pred CCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeecccccCCCCCCccCCCcCC
Confidence 2346778888999999999999999985321 255789999999999998 66788999999
Q ss_pred CCCccccCCCCCCCcceEEecCCceeeecCCCCeeeeCCchhHHHHHHHHHHHHHHhCCCCCcCCCCCHHH----HHHHH
Q 040133 361 GMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASPVVAGVVCLLVSVIPENNRKNILNPAS----MKQAL 436 (1013)
Q Consensus 361 G~st~~~P~~~G~~KpDI~APG~~I~St~~~~~y~~~sGTSmAAP~VAGvaALLls~~P~~~~~~~ltp~~----VK~~L 436 (1013)
| |+..++.||||+|||.+|.++...+.|..++|||||||+|||++|||+|+++... ..|++.+ ||++|
T Consensus 241 G------~~~~~~~~pdi~apG~~i~s~~~~~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~--p~l~~~~~~~~ik~~l 312 (346)
T cd07475 241 G------PTPDLDLKPDITAPGGNIYSTVNDNTYGYMSGTSMASPHVAGASALVKQRLKEKY--PKLSGEELVDLVKNLL 312 (346)
T ss_pred C------CCcccCcCCeEEeCCCCeEEecCCCceEeeCcHHHHHHHHHHHHHHHHHHHHhhC--CCCCHHHHHHHHHHHH
Confidence 9 6678899999999999999999999999999999999999999999999843311 1277766 78899
Q ss_pred HhccccCCC-------CCCCCccccccCHHHHHH
Q 040133 437 VEGAAKLSG-------PNMYEQGAGRVDLLESYE 463 (1013)
Q Consensus 437 ~~TA~~~~~-------~~~~~~G~G~lna~~Av~ 463 (1013)
++||.+... ..+..+|+|+||+.+|++
T Consensus 313 ~~ta~~~~~~~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 313 MNTATPPLDSEDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HhcCCcccccCCCCccCCccccCcchhcHHHhhC
Confidence 999984322 123356999999999974
No 10
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=5.8e-43 Score=378.85 Aligned_cols=246 Identities=31% Similarity=0.450 Sum_probs=215.5
Q ss_pred ccccccccccccccccCchh-hhhCCCCCCCcEEEEEcCCCCCCCCCccc-ccccccCCCCCCCCCCCCCcchhhhhhhc
Q 040133 168 WRRHLLMQRSQVTSLFGADA-LWGKGYTGAKVKMAIFDTGIRENHPHFRN-IKERTNWTNEDTLNDNLGHGTFVAGVVAG 245 (1013)
Q Consensus 168 W~l~~~~~~~~~~~~i~a~~-aW~~g~tG~GV~VaVIDTGId~~Hpdl~~-i~~~~~~~~~~~~~D~~gHGThVAGIIAg 245 (1013)
|+++.+.+.. .+... +|..+++|+||+|||||+||+.+||+|.+ .....++...+...|..+|||||||+|++
T Consensus 1 w~l~~~~~~~-----~~~~~~~~~~~~~G~gv~VaViDsGi~~~h~~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~ 75 (255)
T cd04077 1 WGLDRISQRD-----LPLDGTYYYDSSTGSGVDVYVLDTGIRTTHVEFGGRAIWGADFVGGDPDSDCNGHGTHVAGTVGG 75 (255)
T ss_pred CCccccCCCC-----CCCCCceEecCCCCCCcEEEEEcCCCCCCChhhhCCeeeeeecCCCCCCCCCCccHHHHHHHHHc
Confidence 6777665442 12223 78889999999999999999999999985 34455555555567889999999999998
Q ss_pred cCCCcccccCCCeEEEEEEecCCCCCchHHHHHHHHHHHhC-----CCeEEEecCCCCCCCChHHHHHHHHHhcCCeEEE
Q 040133 246 QDAECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIAT-----NIDVLNLSIGGPDYLDLPFIEKIWEITANNIIMV 320 (1013)
Q Consensus 246 ~~~~~~GVAP~A~I~~vrV~~~~g~~~~s~il~Ai~~Ai~~-----gadVINlS~G~~~~~~~~~~~ai~~a~~~GIivV 320 (1013)
.. .||||+|+|+.+|+++..+....+.++++++|++++ +++|||+|||... ...+.+++.++.++|+++|
T Consensus 76 ~~---~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~--~~~~~~~~~~~~~~g~liV 150 (255)
T cd04077 76 KT---YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA--STALDAAVAAAVNAGVVVV 150 (255)
T ss_pred cc---cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC--CHHHHHHHHHHHHCCCEEE
Confidence 74 799999999999999988778889999999999986 4899999999876 5667888999999999999
Q ss_pred EeccCCCCCCCCCCCCCCCCCceEEeeeecCCCccccCCCCCCccccCCCCCCCcceEEecCCceeeecC--CCCeeeeC
Q 040133 321 SAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKI--STGCKSLS 398 (1013)
Q Consensus 321 aAAGN~G~~~~~i~~PA~~~~VItVGAvd~~g~~a~fSs~G~st~~~P~~~G~~KpDI~APG~~I~St~~--~~~y~~~s 398 (1013)
+||||+|.+.. ..+|+..+++|+||+++.++.++.||++|+ .+|++|||.+|.++.. .+.|..++
T Consensus 151 ~aaGN~g~~~~-~~~pa~~~~vi~Vga~~~~~~~~~~S~~g~------------~~~i~apG~~i~~~~~~~~~~~~~~~ 217 (255)
T cd04077 151 VAAGNSNQDAC-NYSPASAPEAITVGATDSDDARASFSNYGS------------CVDIFAPGVDILSAWIGSDTATATLS 217 (255)
T ss_pred EeCCCCCCCCC-CcCccCCCceEEEeccCCCCCccCcccCCC------------CCcEEeCCCCeEecccCCCCcEEeeC
Confidence 99999997543 678999999999999999999999999996 4899999999999887 67899999
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCcCCCCCHHHHHHHHHhcccc
Q 040133 399 GTSVASPVVAGVVCLLVSVIPENNRKNILNPASMKQALVEGAAK 442 (1013)
Q Consensus 399 GTSmAAP~VAGvaALLls~~P~~~~~~~ltp~~VK~~L~~TA~~ 442 (1013)
|||||||+|||++|||++++|+ +++++||++|++||++
T Consensus 218 GTS~Aap~vaG~~All~~~~p~------~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 218 GTSMAAPHVAGLAAYLLSLGPD------LSPAEVKARLLNLATK 255 (255)
T ss_pred cHHHHHHHHHHHHHHHHhhCCC------CCHHHHHHHHHhhccC
Confidence 9999999999999999999999 9999999999999974
No 11
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.4e-43 Score=385.46 Aligned_cols=256 Identities=37% Similarity=0.584 Sum_probs=216.4
Q ss_pred CCCcEEEEEcCCCCCCCCCcc-------cccccccCCCCC-C---------------CCCCCCCcchhhhhhhccCCC--
Q 040133 195 GAKVKMAIFDTGIRENHPHFR-------NIKERTNWTNED-T---------------LNDNLGHGTFVAGVVAGQDAE-- 249 (1013)
Q Consensus 195 G~GV~VaVIDTGId~~Hpdl~-------~i~~~~~~~~~~-~---------------~~D~~gHGThVAGIIAg~~~~-- 249 (1013)
|+||+|||||+||+++||+|. ++..++++.... . ..|..+|||||||+|+|..++
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~vAgiiag~~~n~~ 80 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGFPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDATGHGTHVAGIIAGNGVNVG 80 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCCCCCceeeeeECccCCCCcccccccccccccCCCCCCCCcHHHHHHHHhcCCCccC
Confidence 899999999999999999996 244444443221 1 234789999999999987643
Q ss_pred -cccccCCCeEEEEEEecCCCCCchHHHHHHHHHHHhCCCeEEEecCCCCCC-CChHHHHHHHHHhcCCeEEEEeccCCC
Q 040133 250 -CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDY-LDLPFIEKIWEITANNIIMVSAIGNDG 327 (1013)
Q Consensus 250 -~~GVAP~A~I~~vrV~~~~g~~~~s~il~Ai~~Ai~~gadVINlS~G~~~~-~~~~~~~ai~~a~~~GIivVaAAGN~G 327 (1013)
..||||+|+|+.+|+++..+......+++||+|+++++++|||||||.... ....+.+++.++.++|+++|+||||+|
T Consensus 81 ~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~~~~~~~~~~~~~~~~~~gil~V~aAGN~g 160 (295)
T cd07474 81 TIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNGPDDPDAIAINNAVKAGVVVVAAAGNSG 160 (295)
T ss_pred ceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHHHhcCCEEEEECCCCC
Confidence 579999999999999986666788899999999999999999999997543 344677888999999999999999999
Q ss_pred CCCCCCCCCCCCCCceEEeeee-----cCCCccccCCCCCCccccCCCCCCCcceEEecCCceeeecCC--CCeeeeCCc
Q 040133 328 PLYGTLNNPADQSDVIGVGGID-----YNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKIS--TGCKSLSGT 400 (1013)
Q Consensus 328 ~~~~~i~~PA~~~~VItVGAvd-----~~g~~a~fSs~G~st~~~P~~~G~~KpDI~APG~~I~St~~~--~~y~~~sGT 400 (1013)
........|+..+++|+||+++ .......++++|. +....++||||+|||.+|.++... +.|...+||
T Consensus 161 ~~~~~~~~pa~~~~~i~Vga~~~~~~~~~~~~~~~~s~~~-----~~~~~~~kpdv~apG~~i~~~~~~~~~~~~~~~GT 235 (295)
T cd07474 161 PAPYTIGSPATAPSAITVGASTVADVAEADTVGPSSSRGP-----PTSDSAIKPDIVAPGVDIMSTAPGSGTGYARMSGT 235 (295)
T ss_pred CCCCcccCCCcCCCeEEEeeeeccCcCCCCceeccCCCCC-----CCCCCCcCCCEECCcCceEeeccCCCCceEEeccH
Confidence 8766677899999999999986 3345566676664 556778899999999999999887 789999999
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCcCCCCCHHHHHHHHHhccccCCCCC-----CCCccccccCHHHH
Q 040133 401 SVASPVVAGVVCLLVSVIPENNRKNILNPASMKQALVEGAAKLSGPN-----MYEQGAGRVDLLES 461 (1013)
Q Consensus 401 SmAAP~VAGvaALLls~~P~~~~~~~ltp~~VK~~L~~TA~~~~~~~-----~~~~G~G~lna~~A 461 (1013)
|||||+|||++||+++++|+ |++++||++|++||++....+ ...+|+|+||+.+|
T Consensus 236 S~AaP~vaG~aAll~~~~p~------l~~~~v~~~L~~tA~~~~~~~~~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 236 SMAAPHVAGAAALLKQAHPD------WSPAQIKAALMNTAKPLYDSDGVVYPVSRQGAGRVDALRA 295 (295)
T ss_pred HHHHHHHHHHHHHHHhhCCC------CCHHHHHHHHHhhCcccccCCCCcCChhccCcceeccccC
Confidence 99999999999999999999 999999999999999875432 25789999999876
No 12
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.6e-42 Score=375.40 Aligned_cols=235 Identities=37% Similarity=0.616 Sum_probs=207.3
Q ss_pred CCCcEEEEEcCCCCCCCCCccccc-ccccCC----CCCCCCCCCCCcchhhhhhhccCCC----cccccCCCeEEEEEEe
Q 040133 195 GAKVKMAIFDTGIRENHPHFRNIK-ERTNWT----NEDTLNDNLGHGTFVAGVVAGQDAE----CLGFAPDTEIYAFRVF 265 (1013)
Q Consensus 195 G~GV~VaVIDTGId~~Hpdl~~i~-~~~~~~----~~~~~~D~~gHGThVAGIIAg~~~~----~~GVAP~A~I~~vrV~ 265 (1013)
|+||+|+|||+||+.+||+|.+.. ....+. ......|..+|||||||+|+|..++ ..||||+|+|+.+|++
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiiag~~~~~~~~~~Giap~a~i~~~~v~ 80 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIRFADFVNTVNGRTTPYDDNGHGTHVAGIIAGSGRASNGKYKGVAPGANLVGVKVL 80 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccccccccccccCCCCCCCCCCchHHHHHHHhcCCcccCCceEEECCCCeEEEEEee
Confidence 899999999999999999998532 222332 2345667789999999999998654 7999999999999999
Q ss_pred cCCCCCchHHHHHHHHHHHhC----CCeEEEecCCCCCC---CChHHHHHHHHHhcCCeEEEEeccCCCCCCCCCCCCCC
Q 040133 266 TDAQVSYTSWFLDAFNYAIAT----NIDVLNLSIGGPDY---LDLPFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPAD 338 (1013)
Q Consensus 266 ~~~g~~~~s~il~Ai~~Ai~~----gadVINlS~G~~~~---~~~~~~~ai~~a~~~GIivVaAAGN~G~~~~~i~~PA~ 338 (1013)
+..+.+..+.+++||+|++++ +++|||+|||.... ....+.+++.++.++|+++|+||||++.....+.+|+.
T Consensus 81 ~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~ 160 (264)
T cd07487 81 DDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGN 160 (264)
T ss_pred cCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCccc
Confidence 988778889999999999998 99999999997653 44567888999999999999999999987666789999
Q ss_pred CCCceEEeeeecCCC----ccccCCCCCCccccCCCCCCCcceEEecCCceeee---------cCCCCeeeeCCchhHHH
Q 040133 339 QSDVIGVGGIDYNDH----IASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGS---------KISTGCKSLSGTSVASP 405 (1013)
Q Consensus 339 ~~~VItVGAvd~~g~----~a~fSs~G~st~~~P~~~G~~KpDI~APG~~I~St---------~~~~~y~~~sGTSmAAP 405 (1013)
.+++|+||+++.++. ++.||++| |...++.||||+|||.+|.+. ...+.+...+|||+|||
T Consensus 161 ~~~vi~Vga~~~~~~~~~~~~~~s~~G------~~~~~~~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~GTS~Aap 234 (264)
T cd07487 161 SPKVITVGAVDDNGPHDDGISYFSSRG------PTGDGRIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFEMSGTSMATP 234 (264)
T ss_pred CCCceEEEeccCCCCCCccccccccCC------CCCCCCcCCCEEccccceEeccccccccCCCCCCceEeccccchHHH
Confidence 999999999999988 79999999 667899999999999999985 44567889999999999
Q ss_pred HHHHHHHHHHHhCCCCCcCCCCCHHHHHHHHHhccc
Q 040133 406 VVAGVVCLLVSVIPENNRKNILNPASMKQALVEGAA 441 (1013)
Q Consensus 406 ~VAGvaALLls~~P~~~~~~~ltp~~VK~~L~~TA~ 441 (1013)
+|||++||+++++|. +++.+||++|++||+
T Consensus 235 ~vaG~~All~~~~p~------~~~~~ik~~L~~tA~ 264 (264)
T cd07487 235 HVSGAIALLLQANPI------LTPDEVKCILRDTAT 264 (264)
T ss_pred HHHHHHHHHHHHCcC------CCHHHHHHHHHhhcC
Confidence 999999999999998 999999999999985
No 13
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=3.2e-42 Score=373.79 Aligned_cols=251 Identities=30% Similarity=0.454 Sum_probs=219.8
Q ss_pred ccccCCccccccccccccccccccCchhhhhCCCCCCCcEEEEEcCCCCCCCCCcccc--cccccCCCC-CCCCCCCCCc
Q 040133 160 TTSNCTINWRRHLLMQRSQVTSLFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNI--KERTNWTNE-DTLNDNLGHG 236 (1013)
Q Consensus 160 ~~~~~~~~W~l~~~~~~~~~~~~i~a~~aW~~g~tG~GV~VaVIDTGId~~Hpdl~~i--~~~~~~~~~-~~~~D~~gHG 236 (1013)
.++....||.+.. ++++.+|+.+ +|+||+|||||+|++.+||+|.+. ....++.+. ....|..+||
T Consensus 3 ~~~~~~~~w~~~~----------~~~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~~~~~~~~~~~~~~~~~d~~~HG 71 (260)
T cd07484 3 NDPYYSYQWNLDQ----------IGAPKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKVKFVLGYDFVDNDSDAMDDNGHG 71 (260)
T ss_pred CCcCcccCCCccc----------cChHHHHhhc-CCCCCEEEEEeCCCCCCCcccccCCcccceeccCCCCCCCCCCCcH
Confidence 3445567887664 5789999999 999999999999999999998542 333344333 3456788999
Q ss_pred chhhhhhhccCCC---cccccCCCeEEEEEEecCCCCCchHHHHHHHHHHHhCCCeEEEecCCCCCCCChHHHHHHHHHh
Q 040133 237 TFVAGVVAGQDAE---CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYLDLPFIEKIWEIT 313 (1013)
Q Consensus 237 ThVAGIIAg~~~~---~~GVAP~A~I~~vrV~~~~g~~~~s~il~Ai~~Ai~~gadVINlS~G~~~~~~~~~~~ai~~a~ 313 (1013)
|||||+|++...+ +.|+||+|+|+.+|++++.+.+....+++||+++++++++|||+|||.... ...+.+++..+.
T Consensus 72 T~vagii~~~~~~~~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~~~-~~~~~~~~~~a~ 150 (260)
T cd07484 72 THVAGIIAAATNNGTGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGGLG-STALQEAINYAW 150 (260)
T ss_pred HHHHHHHhCccCCCCceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCCCC-CHHHHHHHHHHH
Confidence 9999999986543 689999999999999988777788899999999999999999999998763 556888899999
Q ss_pred cCCeEEEEeccCCCCCCCCCCCCCCCCCceEEeeeecCCCccccCCCCCCccccCCCCCCCcceEEecCCceeeecCCCC
Q 040133 314 ANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTG 393 (1013)
Q Consensus 314 ~~GIivVaAAGN~G~~~~~i~~PA~~~~VItVGAvd~~g~~a~fSs~G~st~~~P~~~G~~KpDI~APG~~I~St~~~~~ 393 (1013)
++|++||+||||+|.. ...+|+..+++|+||+++..+.++.||++|. ++|++|||.+|.+....+.
T Consensus 151 ~~gilvV~aaGN~g~~--~~~~pa~~~~vi~Vga~~~~~~~~~~s~~g~------------~~~~~apG~~i~~~~~~~~ 216 (260)
T cd07484 151 NKGVVVVAAAGNEGVS--SVSYPAAYPGAIAVAATDQDDKRASFSNYGK------------WVDVSAPGGGILSTTPDGD 216 (260)
T ss_pred HCCCEEEEeCCCCCCC--CCCCCCCCCCeEEEEeeCCCCCcCCcCCCCC------------CceEEeCCCCcEeecCCCC
Confidence 9999999999999984 4789999999999999999999999999995 5899999999999998899
Q ss_pred eeeeCCchhHHHHHHHHHHHHHHhCCCCCcCCCCCHHHHHHHHHhccccC
Q 040133 394 CKSLSGTSVASPVVAGVVCLLVSVIPENNRKNILNPASMKQALVEGAAKL 443 (1013)
Q Consensus 394 y~~~sGTSmAAP~VAGvaALLls~~P~~~~~~~ltp~~VK~~L~~TA~~~ 443 (1013)
|..++|||||||+|||++||+++++| +++++||++|++||+++
T Consensus 217 ~~~~~GTS~Aap~vag~~Al~~~~~p-------~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 217 YAYMSGTSMATPHVAGVAALLYSQGP-------LSASEVRDALKKTADDI 259 (260)
T ss_pred EEEeeeHHHHHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHhCccC
Confidence 99999999999999999999999987 59999999999999876
No 14
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=2.6e-42 Score=376.29 Aligned_cols=236 Identities=37% Similarity=0.509 Sum_probs=202.9
Q ss_pred CCCcEEEEEcCCCCCCCCCcccccc---------cccCC----CCCCCCCCCCCcchhhhhhhccCC--CcccccCCCeE
Q 040133 195 GAKVKMAIFDTGIRENHPHFRNIKE---------RTNWT----NEDTLNDNLGHGTFVAGVVAGQDA--ECLGFAPDTEI 259 (1013)
Q Consensus 195 G~GV~VaVIDTGId~~Hpdl~~i~~---------~~~~~----~~~~~~D~~gHGThVAGIIAg~~~--~~~GVAP~A~I 259 (1013)
|+||+|||||+||+.+||+|.+... ..+|. ....+.|..+|||||||+|+|..+ +..||||+|+|
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~HGT~vagii~g~~~~~~~~GvAp~a~i 80 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNKYRGWGGGSADHDYNWFDPVGNTPLPYDDNGHGTHTMGTMVGNDGDGQQIGVAPGARW 80 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhcccccCCCCcccccccccCCCCCCCCCCCCCchhhhhhheeecCCCCCceEECCCCeE
Confidence 8999999999999999999985311 11221 112345678999999999998654 36899999999
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHh------------CCCeEEEecCCCCCCCChHHHHHHHHHhcCCeEEEEeccCCC
Q 040133 260 YAFRVFTDAQVSYTSWFLDAFNYAIA------------TNIDVLNLSIGGPDYLDLPFIEKIWEITANNIIMVSAIGNDG 327 (1013)
Q Consensus 260 ~~vrV~~~~g~~~~s~il~Ai~~Ai~------------~gadVINlS~G~~~~~~~~~~~ai~~a~~~GIivVaAAGN~G 327 (1013)
+.+|+++... ++..+++++++|+++ ++++|||||||........+..++..+.++|++||+||||++
T Consensus 81 ~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~~~~~~~~~~~~~~~~~gvlvV~aaGN~~ 159 (264)
T cd07481 81 IACRALDRNG-GNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSGDNEWLQPAVAAWRAAGIFPVFAAGNDG 159 (264)
T ss_pred EEEEeecCCC-CcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCCCCchHHHHHHHHHHHCCCEEEEECCCCC
Confidence 9999998766 778899999999975 789999999998765455667788888889999999999998
Q ss_pred CCCCCC-CCCCCCCCceEEeeeecCCCccccCCCCCCccccCCCCCCCcceEEecCCceeeecCCCCeeeeCCchhHHHH
Q 040133 328 PLYGTL-NNPADQSDVIGVGGIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASPV 406 (1013)
Q Consensus 328 ~~~~~i-~~PA~~~~VItVGAvd~~g~~a~fSs~G~st~~~P~~~G~~KpDI~APG~~I~St~~~~~y~~~sGTSmAAP~ 406 (1013)
...... .+|+.++++|+||+++.++.++.||++| |..+++.||||+|||.+|.++..++.|...+|||||||+
T Consensus 160 ~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~~S~~g------~~~~~~~~~dv~ApG~~i~s~~~~~~~~~~~GTS~AaP~ 233 (264)
T cd07481 160 PRCSTLNAPPANYPESFAVGATDRNDVLADFSSRG------PSTYGRIKPDISAPGVNIRSAVPGGGYGSSSGTSMAAPH 233 (264)
T ss_pred CCCCCCcCCCCcCCceEEEEecCCCCCCccccCCC------CCCCCCcCceEEECCCCeEEecCCCceEeeCcHHHHHHH
Confidence 754433 4899999999999999999999999999 555788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCcCCCCCHHHHHHHHHhccc
Q 040133 407 VAGVVCLLVSVIPENNRKNILNPASMKQALVEGAA 441 (1013)
Q Consensus 407 VAGvaALLls~~P~~~~~~~ltp~~VK~~L~~TA~ 441 (1013)
|||++|||+|++|+ ..++++|||++|++||+
T Consensus 234 vaG~aAll~~~~p~----~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 234 VAGVAALLWSANPS----LIGDVDATEAILTETAR 264 (264)
T ss_pred HHHHHHHHHHhCCC----CCCCHHHHHHHHHHhcC
Confidence 99999999999998 34899999999999985
No 15
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.2e-42 Score=374.81 Aligned_cols=233 Identities=27% Similarity=0.421 Sum_probs=201.2
Q ss_pred CcEEEEEcCCCCCCCCCcc--------cccccccCCCCCCC--CCCCCCcchhhhhhhccCC-CcccccCCCeEEEEEEe
Q 040133 197 KVKMAIFDTGIRENHPHFR--------NIKERTNWTNEDTL--NDNLGHGTFVAGVVAGQDA-ECLGFAPDTEIYAFRVF 265 (1013)
Q Consensus 197 GV~VaVIDTGId~~Hpdl~--------~i~~~~~~~~~~~~--~D~~gHGThVAGIIAg~~~-~~~GVAP~A~I~~vrV~ 265 (1013)
||+||||||||+.+||+|. ++....++..+... .|..+|||||||+|+|..+ .+.||||+|+|+.+|+.
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~HGT~vagiia~~~~~~~~GvAp~a~l~~~~~~ 80 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHLFKNLRILGEYDFVDNSNNTNYTDDDHGTAVLSTMAGYTPGVMVGTAPNASYYLARTE 80 (261)
T ss_pred CCEEEEEccCCCccCcchhhhccccCCceeeeecCccCCCCCCCCCCCchhhhheeeeeCCCCCEEEeCCCCEEEEEEec
Confidence 7999999999999999993 34555666655432 5778999999999999765 47899999999999986
Q ss_pred cCCCC--CchHHHHHHHHHHHhCCCeEEEecCCCCCCCC--------------hHHHHHHHHHhcCCeEEEEeccCCCCC
Q 040133 266 TDAQV--SYTSWFLDAFNYAIATNIDVLNLSIGGPDYLD--------------LPFIEKIWEITANNIIMVSAIGNDGPL 329 (1013)
Q Consensus 266 ~~~g~--~~~s~il~Ai~~Ai~~gadVINlS~G~~~~~~--------------~~~~~ai~~a~~~GIivVaAAGN~G~~ 329 (1013)
..... .....++.|++|+.+++++|||||||...... ..+.+++.++.++|+++|+||||+|..
T Consensus 81 ~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~ 160 (261)
T cd07493 81 DVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGST 160 (261)
T ss_pred ccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCC
Confidence 54332 34556889999999999999999999764322 235677888899999999999999975
Q ss_pred -CCCCCCCCCCCCceEEeeeecCCCccccCCCCCCccccCCCCCCCcceEEecCCceeeecCCCCeeeeCCchhHHHHHH
Q 040133 330 -YGTLNNPADQSDVIGVGGIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASPVVA 408 (1013)
Q Consensus 330 -~~~i~~PA~~~~VItVGAvd~~g~~a~fSs~G~st~~~P~~~G~~KpDI~APG~~I~St~~~~~y~~~sGTSmAAP~VA 408 (1013)
...+.+|+..+++|+|||++.++.++.||++| |..+++.|||++|||.++.+....+.|..++|||||||+||
T Consensus 161 ~~~~~~~Pa~~~~vi~Vga~~~~~~~~~~S~~G------~~~~~~~~pdi~a~G~~~~~~~~~~~~~~~sGTS~AaP~va 234 (261)
T cd07493 161 QWKGIGAPADAENVLSVGAVDANGNKASFSSIG------PTADGRLKPDVMALGTGIYVINGDGNITYANGTSFSCPLIA 234 (261)
T ss_pred CCCcccCcccCCceEEEEEeccCCCCCccCCcC------CCCCCCcCCceEecCCCeEEEcCCCcEEeeCcHHHHHHHHH
Confidence 23578999999999999999999999999999 56678999999999999999888889999999999999999
Q ss_pred HHHHHHHHhCCCCCcCCCCCHHHHHHHHHhccc
Q 040133 409 GVVCLLVSVIPENNRKNILNPASMKQALVEGAA 441 (1013)
Q Consensus 409 GvaALLls~~P~~~~~~~ltp~~VK~~L~~TA~ 441 (1013)
|++|||++++|+ |++.+||++|++||+
T Consensus 235 G~aAll~~~~p~------lt~~~i~~~l~~tA~ 261 (261)
T cd07493 235 GLIACLWQAHPN------WTNLQIKEAILKSAS 261 (261)
T ss_pred HHHHHHHHHCCC------CCHHHHHHHHHHhcC
Confidence 999999999999 999999999999985
No 16
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-43 Score=388.45 Aligned_cols=348 Identities=24% Similarity=0.296 Sum_probs=269.6
Q ss_pred CcccCCcEEEEeCCCCChH---HHHHHHHhhcCCCCCchhhccCCC----------------ccccceeee---EEeccc
Q 040133 45 TRISRNNYIVRFREYKTAE---DHCSYLKSRITPDGWKWIERKNPA----------------SKYPTDFGL---ISVEES 102 (1013)
Q Consensus 45 ~~~v~~~yIV~fk~~~~~~---~~~~~l~~~~~~~~~~~v~r~~~~----------------~~~~~~f~v---~~v~~~ 102 (1013)
.+..+++|||.|+++.+.+ .+.++++..+.... ..+.... .+...++.. .++.+.
T Consensus 76 ~~~~~~~YiV~f~~~~~q~~~s~~~~~~~~~h~~s~---~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ 152 (501)
T KOG1153|consen 76 EEALPSRYIVVFKPDASQQKISAHNRWVQQSHEVSS---GKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGY 152 (501)
T ss_pred hcccccceEEEeCCCccHHHHHhhhHHHHHHhhhhh---ccccccceeEeeccccchhhhcccccccccccchhhccccc
Confidence 3567899999999987765 34455555544311 1111100 000011111 134445
Q ss_pred ccHHHHHHHHcCCCceEEEeCceeeecccCCcccCCCCCCCccccccccccCcccccccccCCccccccccccccccccc
Q 040133 103 AKQGLIEEIERLNLVKDVSVDSSYKRGLLGGAFEDGKKRPGKIFTSMSFNEGEHYTATTSNCTINWRRHLLMQRSQVTSL 182 (1013)
Q Consensus 103 ~~~~~i~~L~~~P~V~~Vepd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~W~l~~~~~~~~~~~~ 182 (1013)
.+.+.+..++++|.++.++++..+..... + ....+..++|++.+++++.+....
T Consensus 153 ft~~~v~~i~~~p~~~~ve~~~~v~~~~~-------------------------~-~i~~Q~~APwgLaRvsh~~~~~y~ 206 (501)
T KOG1153|consen 153 FTGESVCSIRSDPLIKAVEKDSVVEVDKI-------------------------S-TIMLQNNAPWGLARVSHREKLKYD 206 (501)
T ss_pred cccceeeeeccCcceeecccccccccccc-------------------------c-ceecccCCchhhhhhccccccccc
Confidence 56777888999999999999887765321 0 123456788999999877655433
Q ss_pred cCchhhhhCCCCCCCcEEEEEcCCCCCCCCCcccc-cccccCCCCCCCCCCCCCcchhhhhhhccCCCcccccCCCeEEE
Q 040133 183 FGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNI-KERTNWTNEDTLNDNLGHGTFVAGVVAGQDAECLGFAPDTEIYA 261 (1013)
Q Consensus 183 i~a~~aW~~g~tG~GV~VaVIDTGId~~Hpdl~~i-~~~~~~~~~~~~~D~~gHGThVAGIIAg~~~~~~GVAP~A~I~~ 261 (1013)
--....++.. .|+||+.+|+||||+.+||||.+. ..+......+...|++||||||||+|+++. .|||.+++|++
T Consensus 207 ~~~~Y~Y~~~-aG~gvtaYv~DTGVni~H~dFegRa~wGa~i~~~~~~~D~nGHGTH~AG~I~sKt---~GvAK~s~lva 282 (501)
T KOG1153|consen 207 SWGNYVYEID-AGKGVTAYVLDTGVNIEHPDFEGRAIWGATIPPKDGDEDCNGHGTHVAGLIGSKT---FGVAKNSNLVA 282 (501)
T ss_pred chheEEeecc-cCCCeEEEEecccccccccccccceecccccCCCCcccccCCCcceeeeeeeccc---cccccccceEE
Confidence 3334455554 899999999999999999999953 445555556677899999999999999986 89999999999
Q ss_pred EEEecCCCCCchHHHHHHHHHHHhC---------CCeEEEecCCCCCCCChHHHHHHHHHhcCCeEEEEeccCCCCCCCC
Q 040133 262 FRVFTDAQVSYTSWFLDAFNYAIAT---------NIDVLNLSIGGPDYLDLPFIEKIWEITANNIIMVSAIGNDGPLYGT 332 (1013)
Q Consensus 262 vrV~~~~g~~~~s~il~Ai~~Ai~~---------gadVINlS~G~~~~~~~~~~~ai~~a~~~GIivVaAAGN~G~~~~~ 332 (1013)
+||++.+|.+..++++.++++++++ +..|.|||+|++. ...+..|+..|...|+++++||||+..+. +
T Consensus 283 VKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~--S~aLn~AV~~A~~~Gi~fa~AAGNe~eDA-C 359 (501)
T KOG1153|consen 283 VKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFR--SAALNMAVNAASERGIHFAVAAGNEHEDA-C 359 (501)
T ss_pred EEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCcc--cHHHHHHHHHHhhcCeEEEEcCCCcchhh-h
Confidence 9999999999999999999999975 5789999999976 34577899999999999999999998764 4
Q ss_pred CCCCCCCCCceEEeeeecCCCccccCCCCCCccccCCCCCCCcceEEecCCceeeecCCC--CeeeeCCchhHHHHHHHH
Q 040133 333 LNNPADQSDVIGVGGIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKIST--GCKSLSGTSVASPVVAGV 410 (1013)
Q Consensus 333 i~~PA~~~~VItVGAvd~~g~~a~fSs~G~st~~~P~~~G~~KpDI~APG~~I~St~~~~--~y~~~sGTSmAAP~VAGv 410 (1013)
..+||++.++|+|||++..++++.|||||+ ++||.|||.+|.|++.++ .....+|||||+|||||+
T Consensus 360 ~~SPass~~aITVGAst~~D~iA~FSN~G~------------CVdiFAPGv~IlSs~iGs~~at~ilSGTSMasPhvaG~ 427 (501)
T KOG1153|consen 360 NSSPASSKKAITVGASTKNDTIAFFSNWGK------------CVDIFAPGVNILSSWIGSNNATAILSGTSMASPHVAGL 427 (501)
T ss_pred ccCcccccccEEecccccccchhhhcCccc------------eeeeecCchhhhhhhhcCccchheeecccccCcchhhh
Confidence 578999999999999999999999999997 799999999999999886 567899999999999999
Q ss_pred HHHHHHhCCCCC---cCCCCCHHHHHHHHHhcc
Q 040133 411 VCLLVSVIPENN---RKNILNPASMKQALVEGA 440 (1013)
Q Consensus 411 aALLls~~P~~~---~~~~ltp~~VK~~L~~TA 440 (1013)
+|..++..|... .....++.++|..++.-.
T Consensus 428 aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~ 460 (501)
T KOG1153|consen 428 AAYFLSLGPLPDSSFANDAGSPSELKKRLLKFK 460 (501)
T ss_pred HHHhhhcCCCChHHhhhccCChHHhhhhhhccc
Confidence 999999998521 112347888887776544
No 17
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=5.1e-42 Score=379.75 Aligned_cols=228 Identities=28% Similarity=0.390 Sum_probs=188.5
Q ss_pred CCcEEEEEcCCCCCCCCCcccc-----------------------cccccCCCC------------------------CC
Q 040133 196 AKVKMAIFDTGIRENHPHFRNI-----------------------KERTNWTNE------------------------DT 228 (1013)
Q Consensus 196 ~GV~VaVIDTGId~~Hpdl~~i-----------------------~~~~~~~~~------------------------~~ 228 (1013)
++|+|||||||||++||||++. ..+++|... ..
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 80 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGYGNNDVNG 80 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCccccccCeeccCCcccccccccCccccccccccccccCC
Confidence 5899999999999999999842 122333210 11
Q ss_pred CCCCCCCcchhhhhhhccCCC---cccccCCCeEEEEEEecCCCCCchHHHHHHHHHHHhCCCeEEEecCCCCCC-CChH
Q 040133 229 LNDNLGHGTFVAGVVAGQDAE---CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDY-LDLP 304 (1013)
Q Consensus 229 ~~D~~gHGThVAGIIAg~~~~---~~GVAP~A~I~~vrV~~~~g~~~~s~il~Ai~~Ai~~gadVINlS~G~~~~-~~~~ 304 (1013)
+.+..+|||||||||+|..++ +.||||+|+|+++|++.. +....+++++||+||+++|++|||||||.... ....
T Consensus 81 ~~~~~gHGT~VAGiIaa~~~n~~g~~GvAp~a~i~~~k~~~~-g~~~~~~i~~Ai~~a~~~g~~IiN~S~G~~~~~~~~~ 159 (291)
T cd07483 81 PISDADHGTHVAGIIAAVRDNGIGIDGVADNVKIMPLRIVPN-GDERDKDIANAIRYAVDNGAKVINMSFGKSFSPNKEW 159 (291)
T ss_pred CCCCCCcHHHHHHHHhCcCCCCCceEEECCCCEEEEEEEecC-CCcCHHHHHHHHHHHHHCCCcEEEeCCCCCCCCccHH
Confidence 224679999999999997654 689999999999999854 44567889999999999999999999997533 2345
Q ss_pred HHHHHHHHhcCCeEEEEeccCCCCCCC-CCCCCC--------CCCCceEEeeeecCCC---ccccCCCCCCccccCCCCC
Q 040133 305 FIEKIWEITANNIIMVSAIGNDGPLYG-TLNNPA--------DQSDVIGVGGIDYNDH---IASFSSRGMSTWEIPHGYG 372 (1013)
Q Consensus 305 ~~~ai~~a~~~GIivVaAAGN~G~~~~-~i~~PA--------~~~~VItVGAvd~~g~---~a~fSs~G~st~~~P~~~G 372 (1013)
+.+++.++.++|+++|+||||+|.+.. ...+|+ ..+++|+||+++..+. ++.||++|..
T Consensus 160 ~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~~~~~~~~~Sn~G~~--------- 230 (291)
T cd07483 160 VDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKYENNLVANFSNYGKK--------- 230 (291)
T ss_pred HHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccCCcccccccCCCCCC---------
Confidence 677888899999999999999996432 223444 4589999999987653 7899999842
Q ss_pred CCcceEEecCCceeeecCCCCeeeeCCchhHHHHHHHHHHHHHHhCCCCCcCCCCCHHHHHHHHHhccc
Q 040133 373 RVKPDVVAYGREIMGSKISTGCKSLSGTSVASPVVAGVVCLLVSVIPENNRKNILNPASMKQALVEGAA 441 (1013)
Q Consensus 373 ~~KpDI~APG~~I~St~~~~~y~~~sGTSmAAP~VAGvaALLls~~P~~~~~~~ltp~~VK~~L~~TA~ 441 (1013)
++||+|||.+|.++.+.+.|..++|||||||+|||++||++|++|+ |++.|||++|++||.
T Consensus 231 --~vdi~APG~~i~s~~~~~~~~~~sGTS~AaP~vaG~aAl~~s~~p~------lt~~~v~~~L~~ta~ 291 (291)
T cd07483 231 --NVDVFAPGERIYSTTPDNEYETDSGTSMAAPVVSGVAALIWSYYPN------LTAKEVKQIILESGV 291 (291)
T ss_pred --ceEEEeCCCCeEeccCcCCeEeeccHHHHHHHHHHHHHHHHHHCCC------CCHHHHHHHHHHhCC
Confidence 6999999999999999999999999999999999999999999999 999999999999984
No 18
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=4.5e-41 Score=392.70 Aligned_cols=256 Identities=34% Similarity=0.431 Sum_probs=209.5
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcccccc------cccCC-------------------------------CCCCCCCCCCC
Q 040133 193 YTGAKVKMAIFDTGIRENHPHFRNIKE------RTNWT-------------------------------NEDTLNDNLGH 235 (1013)
Q Consensus 193 ~tG~GV~VaVIDTGId~~Hpdl~~i~~------~~~~~-------------------------------~~~~~~D~~gH 235 (1013)
++|+||+|||||||||+.||+|.+... .++.. ......|..||
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D~~GH 80 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPGGYYGGGEYTEEIINAALASDNPYDIVPSRDENGH 80 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCCccccCceEEeHHHHHHHHhcCCccccCcCCCCCCc
Confidence 489999999999999999999984211 00000 00123577899
Q ss_pred cchhhhhhhccCC---CcccccCCCeEEEEEEecCCCC----------CchHHHHHHHHHHHhC-----CCeEEEecCCC
Q 040133 236 GTFVAGVVAGQDA---ECLGFAPDTEIYAFRVFTDAQV----------SYTSWFLDAFNYAIAT-----NIDVLNLSIGG 297 (1013)
Q Consensus 236 GThVAGIIAg~~~---~~~GVAP~A~I~~vrV~~~~g~----------~~~s~il~Ai~~Ai~~-----gadVINlS~G~ 297 (1013)
||||||||||.++ +..||||+|+|+++|++...+. ...++++.||+|+++. .+.|||||||.
T Consensus 81 GThvAGIiag~~~~~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~~p~VInlSlG~ 160 (455)
T cd07478 81 GTHVAGIAAGNGDNNPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPLVINISLGT 160 (455)
T ss_pred hHHHHHHHhcCCCCCCCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 9999999999875 3789999999999999987764 5688999999999974 46899999997
Q ss_pred CC---CCChHHHHHHHHHhcC-CeEEEEeccCCCCC--------------------------------------------
Q 040133 298 PD---YLDLPFIEKIWEITAN-NIIMVSAIGNDGPL-------------------------------------------- 329 (1013)
Q Consensus 298 ~~---~~~~~~~~ai~~a~~~-GIivVaAAGN~G~~-------------------------------------------- 329 (1013)
.. .....+.+++..+..+ |+++|+||||+|..
T Consensus 161 ~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~~~~~~eiW~~~~d~~~v~i 240 (455)
T cd07478 161 NFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGEKGFNLEIWGDFPDRFSVSI 240 (455)
T ss_pred CCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCCcceEEEEecCCCCEEEEEE
Confidence 42 2234567778777766 99999999998720
Q ss_pred --------------------------------------------------------------------------------
Q 040133 330 -------------------------------------------------------------------------------- 329 (1013)
Q Consensus 330 -------------------------------------------------------------------------------- 329 (1013)
T Consensus 241 ~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~~~~~~~g~~~i~i~~~~~~~GiW~i~~~~~~~~~g~~~~Wlp~~~ 320 (455)
T cd07478 241 ISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYYLPEPYTGDQLIFIRFKNIKPGIWKIRLTGVSITDGRFDAWLPSRG 320 (455)
T ss_pred ECCCCCccCccCcCCCcceeEEEEECCeEEEEEEcCCCCCCCCeEEEEEccCCCccceEEEEEeccCCCceEEEEecCcC
Confidence
Q ss_pred -------------CCCCCCCCCCCCceEEeeeecCC-CccccCCCCCCccccCCCCCCCcceEEecCCceeeecCCCCee
Q 040133 330 -------------YGTLNNPADQSDVIGVGGIDYND-HIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCK 395 (1013)
Q Consensus 330 -------------~~~i~~PA~~~~VItVGAvd~~g-~~a~fSs~G~st~~~P~~~G~~KpDI~APG~~I~St~~~~~y~ 395 (1013)
+.++..||+++++|+|||++..+ .++.||++| |+.++++||||+|||.+|+++.+++.|.
T Consensus 321 ~~~~~t~f~~~~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G------~~~~~~~kpdi~APG~~i~s~~~~~~~~ 394 (455)
T cd07478 321 LLSENTRFLEPDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRG------PTRDGRIKPDIAAPGVNILTASPGGGYT 394 (455)
T ss_pred cCCCCCEeecCCCCceEecCCCCCCcEEEEEEeCCCCcccCccCCC------cCCCCCcCceEEecCCCEEEeecCCcEE
Confidence 01234567788999999999865 599999999 6678999999999999999999999999
Q ss_pred eeCCchhHHHHHHHHHHHHHHhCCCCCcCCCCCHHHHHHHHHhccccCCC--CCCCCcccc
Q 040133 396 SLSGTSVASPVVAGVVCLLVSVIPENNRKNILNPASMKQALVEGAAKLSG--PNMYEQGAG 454 (1013)
Q Consensus 396 ~~sGTSmAAP~VAGvaALLls~~P~~~~~~~ltp~~VK~~L~~TA~~~~~--~~~~~~G~G 454 (1013)
.++|||||||||||++|||+|+.|...+...+++++||++|++||++... ....++|||
T Consensus 395 ~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~~tA~~~~~~~~pn~~~GyG 455 (455)
T cd07478 395 TRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGARRRPGDEYPNPEWGYG 455 (455)
T ss_pred eeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHHHhCccCCCCCCCCCCCCCC
Confidence 99999999999999999999999876666679999999999999999863 334578887
No 19
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=2.4e-41 Score=373.54 Aligned_cols=261 Identities=23% Similarity=0.287 Sum_probs=207.2
Q ss_pred ccccCCcccccccccccc-ccccccCchhhhhCCCCCCCcEEEEEcCCCCCCCCCccccc---ccccCCCCC---CCC--
Q 040133 160 TTSNCTINWRRHLLMQRS-QVTSLFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIK---ERTNWTNED---TLN-- 230 (1013)
Q Consensus 160 ~~~~~~~~W~l~~~~~~~-~~~~~i~a~~aW~~g~tG~GV~VaVIDTGId~~Hpdl~~i~---~~~~~~~~~---~~~-- 230 (1013)
+++....||.++...+.. .....+++..+|+.|++|+||+|+||||||+.+||+|.+.. ..+++.... .+.
T Consensus 2 ~dp~~~~qw~l~~~~~~~~~~~~~~~~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (297)
T cd04059 2 NDPLFPYQWYLKNTGQAGGTPGLDLNVTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDPEASYDFNDNDPDPTPRYD 81 (297)
T ss_pred CCcccccccccccCCCCCCCCCCCcccHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccccccccccCCCCCCCCccc
Confidence 455677899999876432 23357899999999999999999999999999999998643 334443322 112
Q ss_pred CCCCCcchhhhhhhccCCC---cccccCCCeEEEEEEecCCCCCchHHHHHHHHHHHhCCCeEEEecCCCCCCC------
Q 040133 231 DNLGHGTFVAGVVAGQDAE---CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYL------ 301 (1013)
Q Consensus 231 D~~gHGThVAGIIAg~~~~---~~GVAP~A~I~~vrV~~~~g~~~~s~il~Ai~~Ai~~gadVINlS~G~~~~~------ 301 (1013)
|..+|||||||+|+|..++ ..||||+|+|+.+|+++.. ........++.++.+ .++|||+|||.....
T Consensus 82 ~~~gHGT~vAgiiag~~~~~~~~~GvAp~a~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~Vin~S~g~~~~~~~~~~~ 158 (297)
T cd04059 82 DDNSHGTRCAGEIAAVGNNGICGVGVAPGAKLGGIRMLDGD--VTDVVEAESLGLNPD-YIDIYSNSWGPDDDGKTVDGP 158 (297)
T ss_pred cccccCcceeeEEEeecCCCcccccccccceEeEEEecCCc--cccHHHHHHHhcccC-CceEEECCCCCCCCCCccCCC
Confidence 7789999999999998654 5899999999999998765 233445566666554 469999999975322
Q ss_pred ChHHHHHHHHHhc-----CCeEEEEeccCCCCC--CCCCCCCCCCCCceEEeeeecCCCccccCCCCCCccccCCCCCCC
Q 040133 302 DLPFIEKIWEITA-----NNIIMVSAIGNDGPL--YGTLNNPADQSDVIGVGGIDYNDHIASFSSRGMSTWEIPHGYGRV 374 (1013)
Q Consensus 302 ~~~~~~ai~~a~~-----~GIivVaAAGN~G~~--~~~i~~PA~~~~VItVGAvd~~g~~a~fSs~G~st~~~P~~~G~~ 374 (1013)
...+.+++.++.. +|+++|+||||+|.. ......|+..+++|+|||++.++.++.||++|+
T Consensus 159 ~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~g~~~~~s~~g~------------ 226 (297)
T cd04059 159 GPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTANGVRASYSEVGS------------ 226 (297)
T ss_pred cHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCCCCCcCCCCCCC------------
Confidence 2234445555443 699999999999973 234456788899999999999999999999996
Q ss_pred cceEEecCCc-------eeeecCC---CCeeeeCCchhHHHHHHHHHHHHHHhCCCCCcCCCCCHHHHHHHHHhccc
Q 040133 375 KPDVVAYGRE-------IMGSKIS---TGCKSLSGTSVASPVVAGVVCLLVSVIPENNRKNILNPASMKQALVEGAA 441 (1013)
Q Consensus 375 KpDI~APG~~-------I~St~~~---~~y~~~sGTSmAAP~VAGvaALLls~~P~~~~~~~ltp~~VK~~L~~TA~ 441 (1013)
..+++|||.. |.++... +.+..++|||||||+|||++|||+|++|+ |++.+||++|++||+
T Consensus 227 ~~~~~a~g~~~~~~~~~i~~~~~~~~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~------lt~~~v~~~L~~TA~ 297 (297)
T cd04059 227 SVLASAPSGGSGNPEASIVTTDLGGNCNCTSSHNGTSAAAPLAAGVIALMLEANPN------LTWRDVQHILALTAR 297 (297)
T ss_pred cEEEEecCCCCCCCCCceEeCCCCCCCCcccccCCcchhhhhhHhHHHHhhccCCC------CCHHHHHHHHHHhcC
Confidence 4688999877 7777765 55788999999999999999999999999 999999999999985
No 20
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=5.2e-41 Score=367.78 Aligned_cols=234 Identities=29% Similarity=0.418 Sum_probs=199.0
Q ss_pred hhhhCCCCCCCcEEEEEcCCCCCCCCCccccc--ccccC-CC-----------CCCCCCCCCCcchhhhhhhccCCC--c
Q 040133 187 ALWGKGYTGAKVKMAIFDTGIRENHPHFRNIK--ERTNW-TN-----------EDTLNDNLGHGTFVAGVVAGQDAE--C 250 (1013)
Q Consensus 187 ~aW~~g~tG~GV~VaVIDTGId~~Hpdl~~i~--~~~~~-~~-----------~~~~~D~~gHGThVAGIIAg~~~~--~ 250 (1013)
++|+.+++|+||+|+||||||+.+||+|.+.. .++.. .+ .....|..+|||||||||++..++ .
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gHGT~VAgiia~~~~~~~~ 80 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGDGYDPAVNGYNFVPNVGDIDNDVSVGGGHGTHVAGTIAAVNNNGGG 80 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCCCcccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHcccCCCcc
Confidence 47999999999999999999999999999641 11111 10 223356789999999999997654 2
Q ss_pred c-------cccCCCeEEEEEEecCCCCCchHHHHHHHHHHHhCCCeEEEecCCCCC--CCChHHHHHHHHHhcC------
Q 040133 251 L-------GFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPD--YLDLPFIEKIWEITAN------ 315 (1013)
Q Consensus 251 ~-------GVAP~A~I~~vrV~~~~g~~~~s~il~Ai~~Ai~~gadVINlS~G~~~--~~~~~~~~ai~~a~~~------ 315 (1013)
. |+||+|+|+.+|+++..+....+.+++||+|+++++++|||||||... .....+.+++.++.++
T Consensus 81 ~g~i~~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~~a~~~~~~~~~~~~~ 160 (273)
T cd07485 81 VGGIAGAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTGGGIYSPLLKDAFDYFIENAGGSPL 160 (273)
T ss_pred eeccccccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCCccccCHHHHHHHHHHHHhcccccC
Confidence 3 499999999999999877778889999999999999999999999865 2344577888888888
Q ss_pred -CeEEEEeccCCCCCCCCCCCCCCCCCceEEeeeecCCCccccCCCCCCccccCCCCCCCcceEEecCC-ceeeecCC--
Q 040133 316 -NIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGR-EIMGSKIS-- 391 (1013)
Q Consensus 316 -GIivVaAAGN~G~~~~~i~~PA~~~~VItVGAvd~~g~~a~fSs~G~st~~~P~~~G~~KpDI~APG~-~I~St~~~-- 391 (1013)
|+++|+||||++.... .+|+..+++|+||+++.++.++.||++|+ .+||+|||. .|.++.+.
T Consensus 161 ~g~lvv~AaGN~g~~~~--~~pa~~~~vi~V~a~~~~~~~~~~S~~g~------------~~~i~apG~~~i~~~~~~~~ 226 (273)
T cd07485 161 DGGIVVFSAGNSYTDEH--RFPAAYPGVIAVAALDTNDNKASFSNYGR------------WVDIAAPGVGTILSTVPKLD 226 (273)
T ss_pred CCeEEEEecCCCCCCCC--CCcccCCCeEEEEeccCCCCcCccccCCC------------ceEEEeCCCCcccccccccc
Confidence 9999999999998543 34999999999999999999999999996 589999999 88877653
Q ss_pred ----CCeeeeCCchhHHHHHHHHHHHHHHhCCCCCcCCCCCHHHHHHHHHhc
Q 040133 392 ----TGCKSLSGTSVASPVVAGVVCLLVSVIPENNRKNILNPASMKQALVEG 439 (1013)
Q Consensus 392 ----~~y~~~sGTSmAAP~VAGvaALLls~~P~~~~~~~ltp~~VK~~L~~T 439 (1013)
+.|..++|||||||+|||++|||++++|+ .++++|||++|++|
T Consensus 227 ~~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~-----~~~~~~i~~~L~~T 273 (273)
T cd07485 227 GDGGGNYEYLSGTSMAAPHVSGVAALVLSKFPD-----VFTPEQIRKLLEES 273 (273)
T ss_pred CCCCCCeEeeccHHHHHHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHhC
Confidence 46899999999999999999999999997 48999999999986
No 21
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.1e-41 Score=375.61 Aligned_cols=228 Identities=32% Similarity=0.497 Sum_probs=191.4
Q ss_pred ccCchhhhh-----CCCCCCCcEEEEEcCCCCCCCCCcccccc-------------c---------------ccCCC---
Q 040133 182 LFGADALWG-----KGYTGAKVKMAIFDTGIRENHPHFRNIKE-------------R---------------TNWTN--- 225 (1013)
Q Consensus 182 ~i~a~~aW~-----~g~tG~GV~VaVIDTGId~~Hpdl~~i~~-------------~---------------~~~~~--- 225 (1013)
.++++.+|+ .+++|+||+|||||||||++||+|.+... . ..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~g~~~~~~~~~ 90 (307)
T cd04852 11 FLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLIGARYFSDGYD 90 (307)
T ss_pred HcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEEEEEEcccchh
Confidence 455666665 49999999999999999999999963100 0 01111
Q ss_pred ----------CCCCCCCCCCcchhhhhhhccCC-----------CcccccCCCeEEEEEEecCCCCCchHHHHHHHHHHH
Q 040133 226 ----------EDTLNDNLGHGTFVAGVVAGQDA-----------ECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAI 284 (1013)
Q Consensus 226 ----------~~~~~D~~gHGThVAGIIAg~~~-----------~~~GVAP~A~I~~vrV~~~~g~~~~s~il~Ai~~Ai 284 (1013)
...+.|..||||||||||||... .+.||||+|+|+++|+++..+.+..+++++||++|+
T Consensus 91 ~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~~~~~~ai~~a~ 170 (307)
T cd04852 91 AYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAI 170 (307)
T ss_pred hccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccHHHHHHHHHHHH
Confidence 12335678999999999998643 357999999999999998867788899999999999
Q ss_pred hCCCeEEEecCCCCC--CCChHHHHHHHHHhcCCeEEEEeccCCCCCCCCCCCCCCCCCceEEeeeecCCCccccCCCCC
Q 040133 285 ATNIDVLNLSIGGPD--YLDLPFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRGM 362 (1013)
Q Consensus 285 ~~gadVINlS~G~~~--~~~~~~~~ai~~a~~~GIivVaAAGN~G~~~~~i~~PA~~~~VItVGAvd~~g~~a~fSs~G~ 362 (1013)
+++++|||||||... .....+..++..+.++|+++|+||||+|+ .....|+..+++|+||+++
T Consensus 171 ~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~--~~~~~~~~~~~vi~Vga~~------------- 235 (307)
T cd04852 171 ADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGP--GASTVPNVAPWVTTVAAST------------- 235 (307)
T ss_pred HcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCC--CCCcccCCCCCeEEEEecc-------------
Confidence 999999999999865 23445677788888999999999999996 4556899999999999998
Q ss_pred CccccCCCCCCCcceEEecCCceeeecCC----------CCeeeeCCchhHHHHHHHHHHHHHHhCCCCCcCCCCCHHHH
Q 040133 363 STWEIPHGYGRVKPDVVAYGREIMGSKIS----------TGCKSLSGTSVASPVVAGVVCLLVSVIPENNRKNILNPASM 432 (1013)
Q Consensus 363 st~~~P~~~G~~KpDI~APG~~I~St~~~----------~~y~~~sGTSmAAP~VAGvaALLls~~P~~~~~~~ltp~~V 432 (1013)
.+|||+|||.+|.+.... +.|..++|||||||+|||++|||+|++|+ ++|++|
T Consensus 236 -----------~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~------~t~~~v 298 (307)
T cd04852 236 -----------LKPDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPD------WSPAAI 298 (307)
T ss_pred -----------CccceeeccCceeecccCccccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCC------CCHHHH
Confidence 179999999999988653 67889999999999999999999999999 999999
Q ss_pred HHHHHhccc
Q 040133 433 KQALVEGAA 441 (1013)
Q Consensus 433 K~~L~~TA~ 441 (1013)
|++|++||+
T Consensus 299 ~~~L~~tA~ 307 (307)
T cd04852 299 KSALMTTAY 307 (307)
T ss_pred HHHHHHhcC
Confidence 999999995
No 22
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.6e-41 Score=361.80 Aligned_cols=236 Identities=31% Similarity=0.506 Sum_probs=199.6
Q ss_pred CcEEEEEcCCCCCCCCCccccc-ccccCC-----CCCCCCCCCCCcchhhhhhhccCC--CcccccCCCeEEEEEEecCC
Q 040133 197 KVKMAIFDTGIRENHPHFRNIK-ERTNWT-----NEDTLNDNLGHGTFVAGVVAGQDA--ECLGFAPDTEIYAFRVFTDA 268 (1013)
Q Consensus 197 GV~VaVIDTGId~~Hpdl~~i~-~~~~~~-----~~~~~~D~~gHGThVAGIIAg~~~--~~~GVAP~A~I~~vrV~~~~ 268 (1013)
||+|||||+||+.+||+|.+.. ...++. ......|..+|||||||+|++..+ ...||||+|+|+++|++...
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~~~~~~~GvAp~a~i~~~~v~~~~ 80 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRVAQWADFDENRRISATEVFDAGGHGTHVSGTIGGGGAKGVYIGVAPEADLLHGKVLDDG 80 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcccCCceeccCCCCCCCCCCCCCCCcHHHHHHHHhcCCCCCCEEEECCCCEEEEEEEecCC
Confidence 7999999999999999998533 233342 233455678999999999999854 36899999999999999876
Q ss_pred CCCchHHHHHHHHHHHhCCCeEEEecCCCCCCCChHHHHHHHHHhc-CCeEEEEeccCCCCCCCCCCCCCCCCCceEEee
Q 040133 269 QVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYLDLPFIEKIWEITA-NNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGG 347 (1013)
Q Consensus 269 g~~~~s~il~Ai~~Ai~~gadVINlS~G~~~~~~~~~~~ai~~a~~-~GIivVaAAGN~G~~~~~i~~PA~~~~VItVGA 347 (1013)
+ ...+++++||+|+++++++|||||||........+.++++.+.+ +|+++|+||||+|.. +..+|++.+++|+|||
T Consensus 81 ~-~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~--~~~~pa~~~~vi~Vga 157 (254)
T cd07490 81 G-GSLSQIIAGMEWAVEKDADVVSMSLGGTYYSEDPLEEAVEALSNQTGALFVVSAGNEGHG--TSGSPGSAYAALSVGA 157 (254)
T ss_pred C-CcHHHHHHHHHHHHhCCCCEEEECCCcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCCCCC--CCCCCccCCceeEEec
Confidence 6 77889999999999999999999999876544556666666554 699999999999975 6789999999999999
Q ss_pred eecCCCccccCCCCCCcccc-----CCCCCCCcceEEecCCceee----ecCCCCeeeeCCchhHHHHHHHHHHHHHHhC
Q 040133 348 IDYNDHIASFSSRGMSTWEI-----PHGYGRVKPDVVAYGREIMG----SKISTGCKSLSGTSVASPVVAGVVCLLVSVI 418 (1013)
Q Consensus 348 vd~~g~~a~fSs~G~st~~~-----P~~~G~~KpDI~APG~~I~S----t~~~~~y~~~sGTSmAAP~VAGvaALLls~~ 418 (1013)
++.++.+..||++|...|.. +......|||++|||.+|.+ ....+.|..++|||||||+|||++||+++++
T Consensus 158 ~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~d~~apG~~i~~~~~~~~~~~~~~~~~GTS~AaP~vaG~aAl~~~~~ 237 (254)
T cd07490 158 VDRDDEDAWFSSFGSSGASLVSAPDSPPDEYTKPDVAAPGVDVYSARQGANGDGQYTRLSGTSMAAPHVAGVAALLAAAH 237 (254)
T ss_pred ccccCCccCccCCcccccccccCCCCCccCCcCceEEeccCCeEccccCCCCCCCeeecccHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999543322 11234579999999999998 6667789999999999999999999999999
Q ss_pred CCCCcCCCCCHHHHHHHHHhccc
Q 040133 419 PENNRKNILNPASMKQALVEGAA 441 (1013)
Q Consensus 419 P~~~~~~~ltp~~VK~~L~~TA~ 441 (1013)
|+ +++.+||++|++||+
T Consensus 238 p~------~~~~~i~~~L~~tA~ 254 (254)
T cd07490 238 PD------LSPEQIKDALTETAY 254 (254)
T ss_pred CC------CCHHHHHHHHHHhcC
Confidence 99 999999999999984
No 23
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.7e-41 Score=371.32 Aligned_cols=237 Identities=27% Similarity=0.427 Sum_probs=191.6
Q ss_pred EEEEEcCCCCCCCCCcccccccccCCCCCC--CCCCCCCcchhhhhhhccCC---CcccccCCCeEEEEEEecCCC----
Q 040133 199 KMAIFDTGIRENHPHFRNIKERTNWTNEDT--LNDNLGHGTFVAGVVAGQDA---ECLGFAPDTEIYAFRVFTDAQ---- 269 (1013)
Q Consensus 199 ~VaVIDTGId~~Hpdl~~i~~~~~~~~~~~--~~D~~gHGThVAGIIAg~~~---~~~GVAP~A~I~~vrV~~~~g---- 269 (1013)
+||||||||+.+||+|+............. ..|..||||||||+|++... ...|+||+|+|+.+|+++..+
T Consensus 2 ~VaviDtGi~~~hp~l~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~~~~~~~~gvap~~~l~~~kv~~~~g~~~~ 81 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPALAEDDLDSDEPGWTADDLGHGTAVAGLALYGDLTLPGNGLPRPGCRLESVRVLPPNGENDP 81 (291)
T ss_pred EEEEecCCCCCCChhhhhhhccccccccCCCCcCCCCCChHHHHHHHHcCcccCCCCCCcccceEEEEEEEcCCCCCCCc
Confidence 799999999999999997544333322222 56889999999999997653 468999999999999998864
Q ss_pred CCchHHHHHHHHHHHhCC---CeEEEecCCCCCCCC----hHHHHHHHH-HhcCCeEEEEeccCCCCCCCC---------
Q 040133 270 VSYTSWFLDAFNYAIATN---IDVLNLSIGGPDYLD----LPFIEKIWE-ITANNIIMVSAIGNDGPLYGT--------- 332 (1013)
Q Consensus 270 ~~~~s~il~Ai~~Ai~~g---adVINlS~G~~~~~~----~~~~~ai~~-a~~~GIivVaAAGN~G~~~~~--------- 332 (1013)
....+++++||+|+++++ ++|||||||...... ..+.+++.+ +.++|++||+||||+|.....
T Consensus 82 ~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~ 161 (291)
T cd04847 82 ELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDD 161 (291)
T ss_pred cChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCcccccccccccccc
Confidence 356778999999999853 499999999864322 134555654 457899999999999975432
Q ss_pred -CCCCCCCCCceEEeeeecCCCccccCCCCCCccc--------cCCCCCCCcceEEecCCceeeec--------------
Q 040133 333 -LNNPADQSDVIGVGGIDYNDHIASFSSRGMSTWE--------IPHGYGRVKPDVVAYGREIMGSK-------------- 389 (1013)
Q Consensus 333 -i~~PA~~~~VItVGAvd~~g~~a~fSs~G~st~~--------~P~~~G~~KpDI~APG~~I~St~-------------- 389 (1013)
+..|+.++++|+|||++.++..+.||++|...+. .|+.++.+||||+|||++|.+..
T Consensus 162 ~i~~Pa~~~~vItVgA~~~~~~~~~~s~~~~~~~~~~~~fs~~Gp~~~~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~ 241 (291)
T cd04847 162 EIEDPADSVNALTVGAITSDDDITDRARYSAVGPAPAGATTSSGPGSPGPIKPDVVAFGGNLAYDPSGNAADGDLSLLTT 241 (291)
T ss_pred ccCCHHHhhhheeeeeeecCccCCCcccccccccccCCCccccCCCCCCCcCCcEEeeCCceeecCCCCCccCcceeeec
Confidence 3468999999999999999888877666643221 16678999999999999997643
Q ss_pred ----CCCCeeeeCCchhHHHHHHHHHHHHHHhCCCCCcCCCCCHHHHHHHHHhccc
Q 040133 390 ----ISTGCKSLSGTSVASPVVAGVVCLLVSVIPENNRKNILNPASMKQALVEGAA 441 (1013)
Q Consensus 390 ----~~~~y~~~sGTSmAAP~VAGvaALLls~~P~~~~~~~ltp~~VK~~L~~TA~ 441 (1013)
..+.|..++|||||||+|||++|||++++|+ +++++||++|++||+
T Consensus 242 ~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~------~t~~~ikalL~~sA~ 291 (291)
T cd04847 242 LSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPE------LSPETIRALLIHSAE 291 (291)
T ss_pred ccCCCCCcccccccchHHHHHHHHHHHHHHHHCCC------CCHHHHHHHHHhhcC
Confidence 3467889999999999999999999999999 999999999999984
No 24
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-40 Score=369.59 Aligned_cols=242 Identities=26% Similarity=0.337 Sum_probs=190.9
Q ss_pred cccccCchhhhhCCCCCCCcEEEEEcCCCCCCCCCcccccc-ccc-CC--CCCCCCCCCCCcchhhhhhhccCCCccccc
Q 040133 179 VTSLFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNIKE-RTN-WT--NEDTLNDNLGHGTFVAGVVAGQDAECLGFA 254 (1013)
Q Consensus 179 ~~~~i~a~~aW~~g~tG~GV~VaVIDTGId~~Hpdl~~i~~-~~~-~~--~~~~~~D~~gHGThVAGIIAg~~~~~~GVA 254 (1013)
+...++++.+|++|++|+||+||||||||+.+|| |.+... ... +. ..+...|+.||||||||+| .|||
T Consensus 4 ~~~~l~~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~~~~~~~~~~~~~~~D~~gHGT~vag~i-------~GvA 75 (298)
T cd07494 4 LAALLNATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQVRVVLAPGATDPACDENGHGTGESANL-------FAIA 75 (298)
T ss_pred HhhhcChhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCccceeecCCCCCCCCCCCCCcchheeece-------eEeC
Confidence 4456899999999999999999999999999998 553211 111 11 1234567889999999876 6899
Q ss_pred CCCeEEEEEEecCCCCCchHHHHHHHHHHHhCCCeEEEecCCCCCCC------------ChHHHHHHHHHhcCCeEEEEe
Q 040133 255 PDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYL------------DLPFIEKIWEITANNIIMVSA 322 (1013)
Q Consensus 255 P~A~I~~vrV~~~~g~~~~s~il~Ai~~Ai~~gadVINlS~G~~~~~------------~~~~~~ai~~a~~~GIivVaA 322 (1013)
|+|+|+.+|+++. ..+++++||+||++++++|||||||..... ...+.+++.++.++|+++|+|
T Consensus 76 P~a~i~~vkv~~~----~~~~~~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaA 151 (298)
T cd07494 76 PGAQFIGVKLGGP----DLVNSVGAFKKAISLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFS 151 (298)
T ss_pred CCCeEEEEEccCC----CcHHHHHHHHHHHhcCCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEe
Confidence 9999999999865 346789999999999999999999975321 124667888889999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCceEEeeeec--CCCc-cccCCCCCCccccCCCCCCCcceEE----------------ecCC
Q 040133 323 IGNDGPLYGTLNNPADQSDVIGVGGIDY--NDHI-ASFSSRGMSTWEIPHGYGRVKPDVV----------------AYGR 383 (1013)
Q Consensus 323 AGN~G~~~~~i~~PA~~~~VItVGAvd~--~g~~-a~fSs~G~st~~~P~~~G~~KpDI~----------------APG~ 383 (1013)
|||++. .+|+++++||+|||++. ++.. ..+++.|... +...|+.|||++ |||.
T Consensus 152 AGN~~~-----~~Pa~~p~viaVga~~~~~~g~~~~~~~~~~~~s---~~~~g~~~pd~~~~~g~~~~~~~~~~~~APG~ 223 (298)
T cd07494 152 AGNGGW-----SFPAQHPEVIAAGGVFVDEDGARRASSYASGFRS---KIYPGRQVPDVCGLVGMLPHAAYLMLPVPPGS 223 (298)
T ss_pred CCCCCC-----CcCCCCCCEEEEEeEeccCCCcccccccccCccc---ccCCCCccCccccccCcCCcccccccccCCCc
Confidence 999874 47999999999999853 4432 2222222110 234577888874 6999
Q ss_pred ceee--------ecCCCCeeeeCCchhHHHHHHHHHHHHHHhCCCCCcCCCCCHHHHHHHHHhccccCCCC
Q 040133 384 EIMG--------SKISTGCKSLSGTSVASPVVAGVVCLLVSVIPENNRKNILNPASMKQALVEGAAKLSGP 446 (1013)
Q Consensus 384 ~I~S--------t~~~~~y~~~sGTSmAAP~VAGvaALLls~~P~~~~~~~ltp~~VK~~L~~TA~~~~~~ 446 (1013)
.|.+ +..+++|..++|||||||||||++|||++++|+ +++++||++|++||+++...
T Consensus 224 ~i~~~~~~~~~~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~------~~~~~v~~~l~~ta~~~~~~ 288 (298)
T cd07494 224 QLDRSCAAFPDGTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPG------LSPERARSLLNKTARDVTKG 288 (298)
T ss_pred ceeccccCCCCCCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCC------CCHHHHHHHHHHhCcccCCC
Confidence 8864 344577999999999999999999999999999 99999999999999987553
No 25
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=2.8e-40 Score=350.94 Aligned_cols=224 Identities=38% Similarity=0.587 Sum_probs=200.2
Q ss_pred CcEEEEEcCCCCCCCCCccc-ccccccCCCCC--CCCCCCCCcchhhhhhhccCCC--cccccCCCeEEEEEEecCCCCC
Q 040133 197 KVKMAIFDTGIRENHPHFRN-IKERTNWTNED--TLNDNLGHGTFVAGVVAGQDAE--CLGFAPDTEIYAFRVFTDAQVS 271 (1013)
Q Consensus 197 GV~VaVIDTGId~~Hpdl~~-i~~~~~~~~~~--~~~D~~gHGThVAGIIAg~~~~--~~GVAP~A~I~~vrV~~~~g~~ 271 (1013)
||+|||||+||+.+||+|.+ +....++.... ...|..+|||||||+|++..++ ..|+||+|+|+.+|+++..+..
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~~~~~~~~~~~~~~~~~~~~~HGT~vA~ii~~~~~~~~~~giap~a~i~~~~~~~~~~~~ 80 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLNIVGGANFTGDDNNDYQDGNGHGTHVAGIIAALDNGVGVVGVAPEADLYAVKVLNDDGSG 80 (229)
T ss_pred CCEEEEEcCCCCCCChhHhccccCcccccCCCCCCCCCCCCCHHHHHHHHhcccCCCccEeeCCCCEEEEEEEECCCCCc
Confidence 79999999999999999985 34445554443 5567889999999999997654 7899999999999999888777
Q ss_pred chHHHHHHHHHHHhCCCeEEEecCCCCCCCChHHHHHHHHHhcCCeEEEEeccCCCCCCCCCCCCCCCCCceEEeeeecC
Q 040133 272 YTSWFLDAFNYAIATNIDVLNLSIGGPDYLDLPFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYN 351 (1013)
Q Consensus 272 ~~s~il~Ai~~Ai~~gadVINlS~G~~~~~~~~~~~ai~~a~~~GIivVaAAGN~G~~~~~i~~PA~~~~VItVGAvd~~ 351 (1013)
..++++++++++++++++|||+|||.... ...+.+++.++.++|+++|+||||++.......+|+..+++|+||+++.+
T Consensus 81 ~~~~l~~ai~~a~~~~~~Vin~S~g~~~~-~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~ 159 (229)
T cd07477 81 TYSDIIAGIEWAIENGMDIINMSLGGPSD-SPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN 159 (229)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCccCCC-CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC
Confidence 78899999999999999999999998654 44577888889999999999999999865555579999999999999999
Q ss_pred CCccccCCCCCCccccCCCCCCCcceEEecCCceeeecCCCCeeeeCCchhHHHHHHHHHHHHHHhCCCCCcCCCCCHHH
Q 040133 352 DHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASPVVAGVVCLLVSVIPENNRKNILNPAS 431 (1013)
Q Consensus 352 g~~a~fSs~G~st~~~P~~~G~~KpDI~APG~~I~St~~~~~y~~~sGTSmAAP~VAGvaALLls~~P~~~~~~~ltp~~ 431 (1013)
+.+..||++|+ ++|++|||.+|.++...+.+...+|||||||+|||++|||+|++|+ +++.+
T Consensus 160 ~~~~~~s~~g~------------~~~~~apg~~i~~~~~~~~~~~~~GTS~Aap~vag~~All~~~~~~------~~~~~ 221 (229)
T cd07477 160 NNRASFSSTGP------------EVELAAPGVDILSTYPNNDYAYLSGTSMATPHVAGVAALVWSKRPE------LTNAQ 221 (229)
T ss_pred CCcCCccCCCC------------CceEEeCCCCeEEecCCCCEEEEccHHHHHHHHHHHHHHHHHhCCC------CCHHH
Confidence 99999999996 6899999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHhc
Q 040133 432 MKQALVEG 439 (1013)
Q Consensus 432 VK~~L~~T 439 (1013)
||++|++|
T Consensus 222 i~~~l~~t 229 (229)
T cd07477 222 VRQALNKT 229 (229)
T ss_pred HHHHHHhC
Confidence 99999876
No 26
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=1.3e-40 Score=366.42 Aligned_cols=243 Identities=30% Similarity=0.415 Sum_probs=197.6
Q ss_pred CCCCCCCcEEEEEcCCCCCCCCCcccc------------cccccCCCCCCCCCCCCCcchhhhhhhccCCC------ccc
Q 040133 191 KGYTGAKVKMAIFDTGIRENHPHFRNI------------KERTNWTNEDTLNDNLGHGTFVAGVVAGQDAE------CLG 252 (1013)
Q Consensus 191 ~g~tG~GV~VaVIDTGId~~Hpdl~~i------------~~~~~~~~~~~~~D~~gHGThVAGIIAg~~~~------~~G 252 (1013)
+|++|+||+|||||+||+.+||+|.+. .....+. +...|..+|||||||+|+|..++ +.|
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~~HGT~vAgiia~~~~~~~~~~~~~G 79 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFNKTNLFHRKIVRYDSLS--DTKDDVDGHGTHVAGIIAGKGNDSSSISLYKG 79 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcCcCccCcccEEEeeccC--CCCCCCCCCcchhheeeccCCcCCCccccccc
Confidence 589999999999999999999999541 1111111 22337789999999999997654 589
Q ss_pred ccCCCeEEEEEEecCCC-CCchHHHHHHHHHHHhCCCeEEEecCCCCCCC-ChHHHHHHHHHh-c-CCeEEEEeccCCCC
Q 040133 253 FAPDTEIYAFRVFTDAQ-VSYTSWFLDAFNYAIATNIDVLNLSIGGPDYL-DLPFIEKIWEIT-A-NNIIMVSAIGNDGP 328 (1013)
Q Consensus 253 VAP~A~I~~vrV~~~~g-~~~~s~il~Ai~~Ai~~gadVINlS~G~~~~~-~~~~~~ai~~a~-~-~GIivVaAAGN~G~ 328 (1013)
|||+|+|+.+|++...+ ......+..+++++.+.+++|||+|||..... .....+++.++. + +|+++|+||||+|.
T Consensus 80 vAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~ 159 (293)
T cd04842 80 VAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNNGYTLLARAYDQFAYNNPDILFVFSAGNDGN 159 (293)
T ss_pred ccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCCccccchHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 99999999999987654 24556688999999999999999999987541 223444554443 3 79999999999997
Q ss_pred CCCC-CCCCCCCCCceEEeeeecCCC---------------ccccCCCCCCccccCCCCCCCcceEEecCCceeeec---
Q 040133 329 LYGT-LNNPADQSDVIGVGGIDYNDH---------------IASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSK--- 389 (1013)
Q Consensus 329 ~~~~-i~~PA~~~~VItVGAvd~~g~---------------~a~fSs~G~st~~~P~~~G~~KpDI~APG~~I~St~--- 389 (1013)
.... +..|+..+++|+|||++..+. ++.||++| |..+++.||||+|||.+|.++.
T Consensus 160 ~~~~~~~~pa~~~~vi~Vga~~~~~~~~~~~~~~~~~~~~~~~~~S~~G------~~~~~~~~pdv~ApG~~i~~~~~~~ 233 (293)
T cd04842 160 DGSNTIGSPATAKNVLTVGASNNPSVSNGEGGLGQSDNSDTVASFSSRG------PTYDGRIKPDLVAPGTGILSARSGG 233 (293)
T ss_pred CCCccccCcccccceEEEeeccCCCcccccccccccCCCCccccccCcC------CCCCCCcCCCEECCCCCeEeccCCC
Confidence 6443 689999999999999998877 89999999 6678999999999999999885
Q ss_pred ------CCCCeeeeCCchhHHHHHHHHHHHHHHhCCCCCcC--CCCCHHHHHHHHHhccc
Q 040133 390 ------ISTGCKSLSGTSVASPVVAGVVCLLVSVIPENNRK--NILNPASMKQALVEGAA 441 (1013)
Q Consensus 390 ------~~~~y~~~sGTSmAAP~VAGvaALLls~~P~~~~~--~~ltp~~VK~~L~~TA~ 441 (1013)
....|...+|||||||+|||++|||+|++|+.... ..+++.++|++|++||+
T Consensus 234 ~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 234 GGIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 33568899999999999999999999998864332 25889999999999985
No 27
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.1e-40 Score=366.85 Aligned_cols=233 Identities=26% Similarity=0.326 Sum_probs=185.1
Q ss_pred cCchhhhhCCC-CCCCcEEEEEcCCCCCCCCCcccccccccCCCCCCCCCCCCCcchhhhhhhccCCC--cccccCCCeE
Q 040133 183 FGADALWGKGY-TGAKVKMAIFDTGIRENHPHFRNIKERTNWTNEDTLNDNLGHGTFVAGVVAGQDAE--CLGFAPDTEI 259 (1013)
Q Consensus 183 i~a~~aW~~g~-tG~GV~VaVIDTGId~~Hpdl~~i~~~~~~~~~~~~~D~~gHGThVAGIIAg~~~~--~~GVAP~A~I 259 (1013)
|+++++|+... .|+||+|+|||+|||.+||||++..... . ......|+++|||||||||+|.+++ +.||||+|+|
T Consensus 2 i~~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~~-~-~~~~~~d~~gHGT~VAGiIaa~~n~~G~~GvAp~a~l 79 (277)
T cd04843 2 INARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGITL-I-SGLTDQADSDHGTAVLGIIVAKDNGIGVTGIAHGAQA 79 (277)
T ss_pred CChHHHHHhcCCCCCcEEEEEecCCCCCCChhhccccccc-c-CCCCCCCCCCCcchhheeeeeecCCCceeeeccCCEE
Confidence 68899999854 5899999999999999999998532211 1 1112567889999999999997543 6899999999
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHh----CCCeEEEecCCCCCCC--------ChHHHHHHHHHhcCCeEEEEeccCCC
Q 040133 260 YAFRVFTDAQVSYTSWFLDAFNYAIA----TNIDVLNLSIGGPDYL--------DLPFIEKIWEITANNIIMVSAIGNDG 327 (1013)
Q Consensus 260 ~~vrV~~~~g~~~~s~il~Ai~~Ai~----~gadVINlS~G~~~~~--------~~~~~~ai~~a~~~GIivVaAAGN~G 327 (1013)
+++|+++ .++++++|.+|++ .++.+||||||++... ...+.+++.++.++|+++|+||||++
T Consensus 80 ~~i~v~~------~~~~~~ai~~A~~~~~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~ 153 (277)
T cd04843 80 AVVSSTR------VSNTADAILDAADYLSPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGG 153 (277)
T ss_pred EEEEecC------CCCHHHHHHHHHhccCCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCC
Confidence 9999986 2346677777776 4567899999986421 23456788889999999999999998
Q ss_pred CCCCCCC----------CCC-CCCCceEEeeeecCC-C-ccccCCCCCCccccCCCCCCCcceEEecCCceeeecCCCC-
Q 040133 328 PLYGTLN----------NPA-DQSDVIGVGGIDYND-H-IASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTG- 393 (1013)
Q Consensus 328 ~~~~~i~----------~PA-~~~~VItVGAvd~~g-~-~a~fSs~G~st~~~P~~~G~~KpDI~APG~~I~St~~~~~- 393 (1013)
.+..... +|. ..+++|+|||++.++ . ++.|||+|+ ++||+|||.+|+++..++.
T Consensus 154 ~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~~~~~~~~fSn~G~------------~vdi~APG~~i~s~~~~~~~ 221 (277)
T cd04843 154 QDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSSTTGHTRLAFSNYGS------------RVDVYGWGENVTTTGYGDLQ 221 (277)
T ss_pred ccccCcccccccccccCCcCcCCCCeEEEEeccCCCCCccccccCCCC------------ccceEcCCCCeEecCCCCcc
Confidence 7532221 222 246899999999764 3 899999996 6899999999999987543
Q ss_pred ---------eeeeCCchhHHHHHHHHHHHHHHh-----CCCCCcCCCCCHHHHHHHHHhccc
Q 040133 394 ---------CKSLSGTSVASPVVAGVVCLLVSV-----IPENNRKNILNPASMKQALVEGAA 441 (1013)
Q Consensus 394 ---------y~~~sGTSmAAP~VAGvaALLls~-----~P~~~~~~~ltp~~VK~~L~~TA~ 441 (1013)
|..++|||||||+|||++|||++. +|+ |+++|||++|++|+.
T Consensus 222 ~~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~------lt~~~v~~~L~~t~~ 277 (277)
T cd04843 222 DLGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTP------LTPIEMRELLTATGT 277 (277)
T ss_pred cccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCC------CCHHHHHHHHHhcCC
Confidence 468999999999999999999875 366 999999999999974
No 28
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.8e-40 Score=365.59 Aligned_cols=223 Identities=30% Similarity=0.434 Sum_probs=191.7
Q ss_pred CcEEEEEcCCCCCCCCCccccc-ccccCCCCC---------------------------------CCCCCCCCcchhhhh
Q 040133 197 KVKMAIFDTGIRENHPHFRNIK-ERTNWTNED---------------------------------TLNDNLGHGTFVAGV 242 (1013)
Q Consensus 197 GV~VaVIDTGId~~Hpdl~~i~-~~~~~~~~~---------------------------------~~~D~~gHGThVAGI 242 (1013)
||+||||||||+.+||+|.+.. .++++..+. ...+..+||||||||
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~~g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~HGT~vAgi 80 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLLPGYDFISDPAIANDGDGRDSDPTDPGDWVTGDDVPPGGFCGSGVSPSSWHGTHVAGT 80 (285)
T ss_pred CCEEEEecCCCCCCCcchhhccccCcccccCcccccCCCCCCCCCCCcccccccccccccccccCCCCCCCCCHHHHHHH
Confidence 7999999999999999999643 444443210 122356799999999
Q ss_pred hhccCC---CcccccCCCeEEEEEEecCCCCCchHHHHHHHHHHH----------hCCCeEEEecCCCCCCCChHHHHHH
Q 040133 243 VAGQDA---ECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAI----------ATNIDVLNLSIGGPDYLDLPFIEKI 309 (1013)
Q Consensus 243 IAg~~~---~~~GVAP~A~I~~vrV~~~~g~~~~s~il~Ai~~Ai----------~~gadVINlS~G~~~~~~~~~~~ai 309 (1013)
|+|..+ .+.||||+|+|+++|+++..+. ..+++++|++|++ .++++|||||||+.......+.+++
T Consensus 81 iaa~~~~~~~~~GvAp~a~i~~~~v~~~~~~-~~~~i~~a~~~a~~~~~~~~~~~~~~~~Iin~S~G~~~~~~~~~~~ai 159 (285)
T cd07496 81 IAAVTNNGVGVAGVAWGARILPVRVLGKCGG-TLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSLGGDGACSATMQNAI 159 (285)
T ss_pred HhCcCCCCCCceeecCCCeEEEEEEecCCCC-cHHHHHHHHHHHhccCcCCCcccCCCCeEEEeCCCCCCCCCHHHHHHH
Confidence 999765 3689999999999999987664 7889999999998 4578999999998765456788999
Q ss_pred HHHhcCCeEEEEeccCCCCCCCCCCCCCCCCCceEEeeeecCCCccccCCCCCCccccCCCCCCCcceEEecCCceeeec
Q 040133 310 WEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSK 389 (1013)
Q Consensus 310 ~~a~~~GIivVaAAGN~G~~~~~i~~PA~~~~VItVGAvd~~g~~a~fSs~G~st~~~P~~~G~~KpDI~APG~~I~St~ 389 (1013)
.++.++|+++|+||||++.+. ...+|+.++++|+|||++.++.++.||++|+ .+|++|||.+|.++.
T Consensus 160 ~~a~~~GvivV~AAGN~g~~~-~~~~Pa~~~~vi~Vga~~~~~~~~~~S~~g~------------~vdi~apG~~i~~~~ 226 (285)
T cd07496 160 NDVRARGVLVVVAAGNEGSSA-SVDAPANCRGVIAVGATDLRGQRASYSNYGP------------AVDVSAPGGDCASDV 226 (285)
T ss_pred HHHHHCCCEEEEECCCCCCCC-CccCCCCCCceEEEeccCCCCCcccccCCCC------------CCCEEeCCCCccccC
Confidence 999999999999999999753 5679999999999999999999999999996 589999999998765
Q ss_pred CC---------------CCeeeeCCchhHHHHHHHHHHHHHHhCCCCCcCCCCCHHHHHHHHHhc
Q 040133 390 IS---------------TGCKSLSGTSVASPVVAGVVCLLVSVIPENNRKNILNPASMKQALVEG 439 (1013)
Q Consensus 390 ~~---------------~~y~~~sGTSmAAP~VAGvaALLls~~P~~~~~~~ltp~~VK~~L~~T 439 (1013)
.. ..|...+|||||||+|||++||+++++|+ |++++||++|++|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~------lt~~~v~~~L~~t 285 (285)
T cd07496 227 NGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPS------LTPAQIESLLQST 285 (285)
T ss_pred CCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCC------CCHHHHHHHHHhC
Confidence 42 35788999999999999999999999999 9999999999876
No 29
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=2.8e-40 Score=377.75 Aligned_cols=205 Identities=32% Similarity=0.425 Sum_probs=169.4
Q ss_pred CCCCCcchhhhhhhccCC---CcccccCCCeEEEEEEecCCCCC--chHHHHHHHHHHHhCCCeEEEecCCCCCCC--Ch
Q 040133 231 DNLGHGTFVAGVVAGQDA---ECLGFAPDTEIYAFRVFTDAQVS--YTSWFLDAFNYAIATNIDVLNLSIGGPDYL--DL 303 (1013)
Q Consensus 231 D~~gHGThVAGIIAg~~~---~~~GVAP~A~I~~vrV~~~~g~~--~~s~il~Ai~~Ai~~gadVINlS~G~~~~~--~~ 303 (1013)
|+.+|||||||||||..+ +..||||+|+|+++|+++..... ...++++||++|++++++|||||||.+... ..
T Consensus 183 d~~gHGThVAGIIAg~~~~~~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG~~~~~~~~~ 262 (412)
T cd04857 183 DSGAHGTHVAGIAAAHFPEEPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYGEATHWPNSG 262 (412)
T ss_pred CCCCCHHHHHHHHhCCCCCCCceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCCcCCCCccch
Confidence 456899999999999753 36899999999999998654321 235699999999999999999999986432 23
Q ss_pred HHHHHHHHH-hcCCeEEEEeccCCCCCCCCCCCCC-CCCCceEEeeeec--------------CCCccccCCCCCCcccc
Q 040133 304 PFIEKIWEI-TANNIIMVSAIGNDGPLYGTLNNPA-DQSDVIGVGGIDY--------------NDHIASFSSRGMSTWEI 367 (1013)
Q Consensus 304 ~~~~ai~~a-~~~GIivVaAAGN~G~~~~~i~~PA-~~~~VItVGAvd~--------------~g~~a~fSs~G~st~~~ 367 (1013)
.+.+++.++ .++|+++|+||||+|+..+++.+|+ ..++||+|||+.. .+.+..|||+|
T Consensus 263 ~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y~~~~~~~~~~~~fSSrG------ 336 (412)
T cd04857 263 RIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEYSLREKLPGNQYTWSSRG------ 336 (412)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccccccccccCCccccccccC------
Confidence 455566554 4589999999999999888888997 5899999999853 35678999999
Q ss_pred CCCCCCCcceEEecCCceeee--cCCCCeeeeCCchhHHHHHHHHHHHHHHhCCCCCcCCCCCHHHHHHHHHhccccC
Q 040133 368 PHGYGRVKPDVVAYGREIMGS--KISTGCKSLSGTSVASPVVAGVVCLLVSVIPENNRKNILNPASMKQALVEGAAKL 443 (1013)
Q Consensus 368 P~~~G~~KpDI~APG~~I~St--~~~~~y~~~sGTSmAAP~VAGvaALLls~~P~~~~~~~ltp~~VK~~L~~TA~~~ 443 (1013)
|..+|+.||||+|||..|.+. +...+|..++|||||||||||++|||+|+++. ++..++|.+||++|++||+++
T Consensus 337 P~~dG~~~pdI~APG~~I~s~p~~~~~~~~~~sGTSmAaP~VAG~aALllSa~k~--~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 337 PTADGALGVSISAPGGAIASVPNWTLQGSQLMNGTSMSSPNACGGIALLLSGLKA--EGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred CcccCCcCceEEeCCCcEEEcccCCCCCeEEecccHHHHHHHHHHHHHHHhhhhh--cCCCCCHHHHHHHHHHhCccC
Confidence 778999999999999999875 33467899999999999999999999987653 334499999999999999864
No 30
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.6e-40 Score=353.05 Aligned_cols=222 Identities=33% Similarity=0.414 Sum_probs=192.8
Q ss_pred cEEEEEcCCCCCCCCCccc---ccccccCCCCC-CCCCCCCCcchhhhhhhccCC---CcccccCCCeEEEEEEecCCCC
Q 040133 198 VKMAIFDTGIRENHPHFRN---IKERTNWTNED-TLNDNLGHGTFVAGVVAGQDA---ECLGFAPDTEIYAFRVFTDAQV 270 (1013)
Q Consensus 198 V~VaVIDTGId~~Hpdl~~---i~~~~~~~~~~-~~~D~~gHGThVAGIIAg~~~---~~~GVAP~A~I~~vrV~~~~g~ 270 (1013)
|+|||||+||+.+||+|++ +...+++...+ ...|..+|||||||||++..+ .+.||||+|+|+.+|++...+.
T Consensus 1 V~VaviDsGi~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~HGT~vAgiiag~~~~~~~~~Gvap~a~i~~~~~~~~~~~ 80 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKPKLVPGWNFVSNNDPTSDIDGHGTACAGVAAAVGNNGLGVAGVAPGAKLMPVRIADSLGY 80 (242)
T ss_pred CEEEEecCCCCCCChhhccCcCccCCccccCCCCCCCCCCCCHHHHHHHHHhccCCCceeEeECCCCEEEEEEEECCCCC
Confidence 7899999999999999997 44444444333 356788999999999999764 3689999999999999988766
Q ss_pred CchHHHHHHHHHHHhCCCeEEEecCCCCCCC---ChHHHHHHHHHhc-CCeEEEEeccCCCCCCCCCCCCCCCCCceEEe
Q 040133 271 SYTSWFLDAFNYAIATNIDVLNLSIGGPDYL---DLPFIEKIWEITA-NNIIMVSAIGNDGPLYGTLNNPADQSDVIGVG 346 (1013)
Q Consensus 271 ~~~s~il~Ai~~Ai~~gadVINlS~G~~~~~---~~~~~~ai~~a~~-~GIivVaAAGN~G~~~~~i~~PA~~~~VItVG 346 (1013)
...+.++++++|+++++++|||+|||..... ...+.+++.++.. +|+++|+||||+|.... .+|+..+++|+||
T Consensus 81 ~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~--~~pa~~~~vi~Vg 158 (242)
T cd07498 81 AYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVS--SGYAANPSVIAVA 158 (242)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHHHHHHhhcCCeEEEEecCCCCCccC--CCCcCCCCeEEEE
Confidence 7888999999999999999999999976542 2456667777888 99999999999997533 3899999999999
Q ss_pred eeecCCCccccCCCCCCccccCCCCCCCcceEEecCCceeee---------cCCCCeeeeCCchhHHHHHHHHHHHHHHh
Q 040133 347 GIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGS---------KISTGCKSLSGTSVASPVVAGVVCLLVSV 417 (1013)
Q Consensus 347 Avd~~g~~a~fSs~G~st~~~P~~~G~~KpDI~APG~~I~St---------~~~~~y~~~sGTSmAAP~VAGvaALLls~ 417 (1013)
+++..+.+++||++|+ .+|++|||.++.+. ...+.|..++|||||||+|||++|||+++
T Consensus 159 a~~~~~~~~~~s~~g~------------~~~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~ 226 (242)
T cd07498 159 ATDSNDARASYSNYGN------------YVDLVAPGVGIWTTGTGRGSAGDYPGGGYGSFSGTSFASPVAAGVAALILSA 226 (242)
T ss_pred EeCCCCCccCcCCCCC------------CeEEEeCcCCcccCCccccccccCCCCceEeeCcHHHHHHHHHHHHHHHHHh
Confidence 9999999999999996 58999999999887 45677889999999999999999999999
Q ss_pred CCCCCcCCCCCHHHHHHHHHhc
Q 040133 418 IPENNRKNILNPASMKQALVEG 439 (1013)
Q Consensus 418 ~P~~~~~~~ltp~~VK~~L~~T 439 (1013)
+|+ |++++||++|++|
T Consensus 227 ~p~------l~~~~i~~~L~~t 242 (242)
T cd07498 227 NPN------LTPAEVEDILTST 242 (242)
T ss_pred CCC------CCHHHHHHHHHhC
Confidence 999 9999999999975
No 31
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.2e-40 Score=363.75 Aligned_cols=255 Identities=26% Similarity=0.386 Sum_probs=201.0
Q ss_pred CCCCCCCcEEEEEcCCCCCCCCCcccc-cccccCCCCCCCCCCCCCcchhhhhhhccCCC--cccccCCCeEEEEEEecC
Q 040133 191 KGYTGAKVKMAIFDTGIRENHPHFRNI-KERTNWTNEDTLNDNLGHGTFVAGVVAGQDAE--CLGFAPDTEIYAFRVFTD 267 (1013)
Q Consensus 191 ~g~tG~GV~VaVIDTGId~~Hpdl~~i-~~~~~~~~~~~~~D~~gHGThVAGIIAg~~~~--~~GVAP~A~I~~vrV~~~ 267 (1013)
.+++|+||+|||||+||+.+||+|.+. ....+|.+.....|..+|||||||+|+|..++ ..||||+|+|+.+|++..
T Consensus 3 ~~~tG~gv~VaVlDsGv~~~hp~l~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~GvAp~a~i~~~~~~~~ 82 (297)
T cd07480 3 SPFTGAGVRVAVLDTGIDLTHPAFAGRDITTKSFVGGEDVQDGHGHGTHCAGTIFGRDVPGPRYGVARGAEIALIGKVLG 82 (297)
T ss_pred CCCCCCCCEEEEEcCCCCCCChhhcCCcccCcccCCCCCCCCCCCcHHHHHHHHhcccCCCcccccCCCCEEEEEEEEeC
Confidence 468999999999999999999999853 34456666656678899999999999987543 579999999999999987
Q ss_pred CCCCchHHHHHHHHHHHhCCCeEEEecCCCCC--------CCCh----HHHHHHHHH---------------hcCCeEEE
Q 040133 268 AQVSYTSWFLDAFNYAIATNIDVLNLSIGGPD--------YLDL----PFIEKIWEI---------------TANNIIMV 320 (1013)
Q Consensus 268 ~g~~~~s~il~Ai~~Ai~~gadVINlS~G~~~--------~~~~----~~~~ai~~a---------------~~~GIivV 320 (1013)
......+.+++||+||++++++|||+|||... .... .+.+....+ ..+|+++|
T Consensus 83 ~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV 162 (297)
T cd07480 83 DGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIV 162 (297)
T ss_pred CCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEE
Confidence 77777888999999999999999999999743 1111 122222223 57899999
Q ss_pred EeccCCCCCCCC---CCCCCCCCCceEEeeeecCCCccccCCCCCCccccCCCCCCCcceEEecCCceeeecCCCCeeee
Q 040133 321 SAIGNDGPLYGT---LNNPADQSDVIGVGGIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSL 397 (1013)
Q Consensus 321 aAAGN~G~~~~~---i~~PA~~~~VItVGAvd~~g~~a~fSs~G~st~~~P~~~G~~KpDI~APG~~I~St~~~~~y~~~ 397 (1013)
+||||++..... ...|+..+.+++|++++..+....|++... ++..+|||+|||.+|.++..+++|..+
T Consensus 163 ~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~~~~~~~~~~~~~~--------~~~~~~dv~ApG~~i~s~~~~~~~~~~ 234 (297)
T cd07480 163 AAAGNESQRPAGIPPVGNPAACPSAMGVAAVGALGRTGNFSAVAN--------FSNGEVDIAAPGVDIVSAAPGGGYRSM 234 (297)
T ss_pred EecCCCCCCCCCCCCccCccccccccEEEEECCCCCCCCccccCC--------CCCCceEEEeCCCCeEeecCCCcEEEe
Confidence 999999864322 334555667777777777776666655432 334589999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHhCCCCCcCCCCCHHHHHHHHHh------ccccCCCCCCCCccccccCHH
Q 040133 398 SGTSVASPVVAGVVCLLVSVIPENNRKNILNPASMKQALVE------GAAKLSGPNMYEQGAGRVDLL 459 (1013)
Q Consensus 398 sGTSmAAP~VAGvaALLls~~P~~~~~~~ltp~~VK~~L~~------TA~~~~~~~~~~~G~G~lna~ 459 (1013)
+|||||||+|||++||+++++|+ +++.+++++|++ +....++.+..++|+|++++.
T Consensus 235 sGTS~AaP~VaG~aAll~~~~p~------~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 235 SGTSMATPHVAGVAALWAEALPK------AGGRALAALLQARLTAARTTQFAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred CcHHHHHHHHHHHHHHHHHhCcc------cCHHHHHHHHHHHHhhcccCCCCCCCChhhcCCceeecC
Confidence 99999999999999999999999 888887777763 223344455667899999864
No 32
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.6e-40 Score=354.56 Aligned_cols=205 Identities=18% Similarity=0.280 Sum_probs=177.6
Q ss_pred CCCcEEEEEcCCCCCCCCCccc-ccccccCCCCCC--------CCCCCCCcchhhhhhhccCCCcccccCCCeEEEEEEe
Q 040133 195 GAKVKMAIFDTGIRENHPHFRN-IKERTNWTNEDT--------LNDNLGHGTFVAGVVAGQDAECLGFAPDTEIYAFRVF 265 (1013)
Q Consensus 195 G~GV~VaVIDTGId~~Hpdl~~-i~~~~~~~~~~~--------~~D~~gHGThVAGIIAg~~~~~~GVAP~A~I~~vrV~ 265 (1013)
|++|+|||||||||.+||+|++ +....+|...+. ..|..||||||||||+ |+||+|+|+++|++
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~i~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiI~-------gvap~a~i~~~kv~ 74 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGKIIGGKSFSPYEGDGNKVSPYYVSADGHGTAMARMIC-------RICPSAKLYVIKLE 74 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccccccCCCCCCCCCCcccCCCCCCCCCCcHHHHHHHHH-------HHCCCCeEEEEEec
Confidence 6899999999999999999996 345555554321 2467899999999995 68999999999999
Q ss_pred cCCC------CCchHHHHHHHHHHHhCCCeEEEecCCCCCC-----CChHHHHHHHHHhcCCeEEEEeccCCCCCCC-CC
Q 040133 266 TDAQ------VSYTSWFLDAFNYAIATNIDVLNLSIGGPDY-----LDLPFIEKIWEITANNIIMVSAIGNDGPLYG-TL 333 (1013)
Q Consensus 266 ~~~g------~~~~s~il~Ai~~Ai~~gadVINlS~G~~~~-----~~~~~~~ai~~a~~~GIivVaAAGN~G~~~~-~i 333 (1013)
+..+ ......+++||+||+++|++|||||||.... ....+.+++.+|.++|+++|+||||+|.... .+
T Consensus 75 ~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~ 154 (247)
T cd07491 75 DRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTY 154 (247)
T ss_pred ccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcc
Confidence 8654 3456789999999999999999999997653 1456788999999999999999999998654 56
Q ss_pred CCCCCCCCceEEeeeecCCCccccCCCCCCccccCCCCCCCcceEEecCCceeeecC---CCCeeeeCCchhHHHHHHHH
Q 040133 334 NNPADQSDVIGVGGIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKI---STGCKSLSGTSVASPVVAGV 410 (1013)
Q Consensus 334 ~~PA~~~~VItVGAvd~~g~~a~fSs~G~st~~~P~~~G~~KpDI~APG~~I~St~~---~~~y~~~sGTSmAAP~VAGv 410 (1013)
.+|+..++||+|||++.++.++.||++|. .+|++|||.+|.++.. .+.|..++|||||||+|||+
T Consensus 155 ~~pa~~~~Vi~VgA~~~~g~~~~~S~~g~------------~vd~~APG~~i~s~~~~~~~~~~~~~sGTS~Atp~vaGv 222 (247)
T cd07491 155 PPPAARDRIFRIGAADEDGGADAPVGDED------------RVDYILPGENVEARDRPPLSNSFVTHTGSSVATALAAGL 222 (247)
T ss_pred cCcccCCCeEEEEeeCCCCCCccccCCCC------------cceEEeCCCceecCCcCCCCCCeeeeccHHHHHHHHHHH
Confidence 67999999999999999999999999985 5899999999999865 67899999999999999999
Q ss_pred HHHHHHhC
Q 040133 411 VCLLVSVI 418 (1013)
Q Consensus 411 aALLls~~ 418 (1013)
+||+++..
T Consensus 223 aAL~l~~~ 230 (247)
T cd07491 223 AALILYCV 230 (247)
T ss_pred HHHHHHHH
Confidence 99999865
No 33
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.8e-39 Score=347.64 Aligned_cols=228 Identities=32% Similarity=0.480 Sum_probs=196.9
Q ss_pred CCcEEEEEcCCCCCCCCCccccccc--------------ccCC----------CCCCCCCCCCCcchhhhhhhccCCC--
Q 040133 196 AKVKMAIFDTGIRENHPHFRNIKER--------------TNWT----------NEDTLNDNLGHGTFVAGVVAGQDAE-- 249 (1013)
Q Consensus 196 ~GV~VaVIDTGId~~Hpdl~~i~~~--------------~~~~----------~~~~~~D~~gHGThVAGIIAg~~~~-- 249 (1013)
+||+||||||||+++||+|.+.... ..+. ......|..+|||||||+|++..++
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~HGT~va~ii~~~~~~~~ 81 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPGEIPGNGIDDDGNGYVDDIYGWNFVNNDNDPMDDNGHGTHVAGIIGAVGNNGI 81 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcccccccCcccCCCCcccCCCcccccCCCCCCCCCCCcHHHHHHHHHCcCCCCC
Confidence 6899999999999999999963210 0111 1123467789999999999997643
Q ss_pred -cccccCCCeEEEEEEecCCCCCchHHHHHHHHHHHhCCCeEEEecCCCCCCCChHHHHHHHHHhcCCeEEEEeccCCCC
Q 040133 250 -CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYLDLPFIEKIWEITANNIIMVSAIGNDGP 328 (1013)
Q Consensus 250 -~~GVAP~A~I~~vrV~~~~g~~~~s~il~Ai~~Ai~~gadVINlS~G~~~~~~~~~~~ai~~a~~~GIivVaAAGN~G~ 328 (1013)
..||||+|+|+.+|++...+......++++++++++.+++|||+|||.... ...+.+++.++..+|+++|+||||+|.
T Consensus 82 ~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~-~~~~~~~~~~~~~~g~ivV~aaGN~g~ 160 (259)
T cd07473 82 GIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP-SQALRDAIARAIDAGILFVAAAGNDGT 160 (259)
T ss_pred ceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC-CHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 489999999999999988777888899999999999999999999998765 567888999999999999999999987
Q ss_pred CCC-CCCCCCC--CCCceEEeeeecCCCccccCCCCCCccccCCCCCCCcceEEecCCceeeecCCCCeeeeCCchhHHH
Q 040133 329 LYG-TLNNPAD--QSDVIGVGGIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASP 405 (1013)
Q Consensus 329 ~~~-~i~~PA~--~~~VItVGAvd~~g~~a~fSs~G~st~~~P~~~G~~KpDI~APG~~I~St~~~~~y~~~sGTSmAAP 405 (1013)
... ...+|+. .+++|+||+++..+.+..||++|+. ++|++|||.++++....+.|..++|||||||
T Consensus 161 ~~~~~~~~p~~~~~~~vi~Vga~~~~~~~~~~s~~g~~-----------~~~~~apG~~~~~~~~~~~~~~~~GTS~AaP 229 (259)
T cd07473 161 NNDKTPTYPASYDLDNIISVAATDSNDALASFSNYGKK-----------TVDLAAPGVDILSTSPGGGYGYMSGTSMATP 229 (259)
T ss_pred CCCCCcCcCcccCCCCeEEEEecCCCCCcCcccCCCCC-----------CcEEEeccCCeEeccCCCcEEEeccHhHHHH
Confidence 522 2345664 5889999999999999999999953 6999999999999988899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCcCCCCCHHHHHHHHHhccc
Q 040133 406 VVAGVVCLLVSVIPENNRKNILNPASMKQALVEGAA 441 (1013)
Q Consensus 406 ~VAGvaALLls~~P~~~~~~~ltp~~VK~~L~~TA~ 441 (1013)
+|||++||++|++|. +++++||++|++||+
T Consensus 230 ~vaG~~All~~~~~~------~t~~~v~~~L~~tA~ 259 (259)
T cd07473 230 HVAGAAALLLSLNPN------LTAAQIKDAILSSAD 259 (259)
T ss_pred HHHHHHHHHHHhCCC------CCHHHHHHHHHHhCC
Confidence 999999999999999 999999999999984
No 34
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=2.1e-39 Score=353.68 Aligned_cols=253 Identities=36% Similarity=0.572 Sum_probs=209.3
Q ss_pred EEEEEcCCCCCCCCCcc-c-cc-----ccccCCCC----CCCCCCCCCcchhhhhhhccC-C---CcccccCCCeEEEEE
Q 040133 199 KMAIFDTGIRENHPHFR-N-IK-----ERTNWTNE----DTLNDNLGHGTFVAGVVAGQD-A---ECLGFAPDTEIYAFR 263 (1013)
Q Consensus 199 ~VaVIDTGId~~Hpdl~-~-i~-----~~~~~~~~----~~~~D~~gHGThVAGIIAg~~-~---~~~GVAP~A~I~~vr 263 (1013)
+||||||||+.+||+|. + +. ..++|... ....|..+|||||||+|++.. . ...|+||+|+|+.+|
T Consensus 1 ~V~viDtGid~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~va~ii~~~~~~~~~~~~Gva~~a~l~~~~ 80 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNFIWSKVPGGYNFVDGNPNPSPSDDDNGHGTHVAGIIAGNGGNNGPGINGVAPNAKLYSYK 80 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTEEEEEEEEEEETTTTBSTTTSSSTSSSHHHHHHHHHHHTTSSSSSSETCSSTTSEEEEEE
T ss_pred CEEEEcCCcCCCChhHccCCcccccccceeeccCCCCCcCccccCCCccchhhhhccccccccccccccccccccccccc
Confidence 69999999999999999 3 22 13445443 345677899999999999985 2 258999999999999
Q ss_pred EecCCCCCchHHHHHHHHHHH-hCCCeEEEecCCCC--CCC---ChHHHHHHHHHhcCCeEEEEeccCCCCCCCC-CCCC
Q 040133 264 VFTDAQVSYTSWFLDAFNYAI-ATNIDVLNLSIGGP--DYL---DLPFIEKIWEITANNIIMVSAIGNDGPLYGT-LNNP 336 (1013)
Q Consensus 264 V~~~~g~~~~s~il~Ai~~Ai-~~gadVINlS~G~~--~~~---~~~~~~ai~~a~~~GIivVaAAGN~G~~~~~-i~~P 336 (1013)
+++..+ ....+++++|++++ +.+++|||+|||.. ... ...+..++..+.++|+++|+||||+|..... +.+|
T Consensus 81 i~~~~~-~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~P 159 (282)
T PF00082_consen 81 IFDNSG-GTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFP 159 (282)
T ss_dssp CSSTTS-EEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBT
T ss_pred cccccc-cccccccchhhhhhhccCCccccccccccccccccccccccccccccccccCcceeecccccccccccccccc
Confidence 987766 77888999999999 89999999999872 211 1123345667888999999999999875444 7899
Q ss_pred CCCCCceEEeeeecCCCccccCCCCCCccccCCCCCCCcceEEecCCceeeecCCCC---eeeeCCchhHHHHHHHHHHH
Q 040133 337 ADQSDVIGVGGIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTG---CKSLSGTSVASPVVAGVVCL 413 (1013)
Q Consensus 337 A~~~~VItVGAvd~~g~~a~fSs~G~st~~~P~~~G~~KpDI~APG~~I~St~~~~~---y~~~sGTSmAAP~VAGvaAL 413 (1013)
+..+++|+||+++.++.++.||++|. +...++.|||++|||.++.+...... +...+|||||||+|||++||
T Consensus 160 a~~~~vi~Vg~~~~~~~~~~~s~~g~-----~~~~~~~~~di~a~G~~i~~~~~~~~~~~~~~~~GTS~Aap~vag~~Al 234 (282)
T PF00082_consen 160 ASSPNVITVGAVDNNGQPASYSNYGG-----PSDDGRIKPDIAAPGGNILSAVPGSDRGSYTSFSGTSFAAPVVAGAAAL 234 (282)
T ss_dssp TTSTTSEEEEEEETTSSBSTTSSBST-----TETTCTTCEEEEEECSSEEEEETTTESEEEEEEESHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccc-----cccccccccccccccccccccccccccccccccCcCCchHHHHHHHHHH
Confidence 99999999999999999999999984 55688999999999999988877654 77899999999999999999
Q ss_pred HHHhCCCCCcCCCCCHHHHHHHHHhccccCCCC----CCCCccccccCHHHHHH
Q 040133 414 LVSVIPENNRKNILNPASMKQALVEGAAKLSGP----NMYEQGAGRVDLLESYE 463 (1013)
Q Consensus 414 Lls~~P~~~~~~~ltp~~VK~~L~~TA~~~~~~----~~~~~G~G~lna~~Av~ 463 (1013)
+++++|+ +++++||++|++||++.... ....+|||++|+.+|++
T Consensus 235 l~~~~p~------~~~~~i~~~l~~ta~~~~~~~~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 235 LLSKYPN------LTPAEIKALLINTADDLGSTNGEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHHSTT------SHHHHHHHHHHHHSBESSETTSSSSHHHHTTSBE-HHHHHH
T ss_pred HHHHCCC------CCHHHHHHHHHHhCcccCcCCCCCCCCCccCChhCHHHHhC
Confidence 9999999 99999999999999998721 22357999999999985
No 35
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=6.8e-39 Score=352.67 Aligned_cols=225 Identities=32% Similarity=0.503 Sum_probs=185.0
Q ss_pred CcEEEEEcCCCCCCCCCcccc-cccc-------cCCC--------CCCCCCCCCCcchhhhhhhccCCCcccccCCCeEE
Q 040133 197 KVKMAIFDTGIRENHPHFRNI-KERT-------NWTN--------EDTLNDNLGHGTFVAGVVAGQDAECLGFAPDTEIY 260 (1013)
Q Consensus 197 GV~VaVIDTGId~~Hpdl~~i-~~~~-------~~~~--------~~~~~D~~gHGThVAGIIAg~~~~~~GVAP~A~I~ 260 (1013)
.|+||||||||+.+||+|++. .... .+.. .+...|..||||||||+|+|..+ ..||||+|+|+
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~~-~~GvAp~a~i~ 79 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSYSKNLVPKGGYDGKEAGETGDINDIVDKLGHGTAVAGQIAANGN-IKGVAPGIGIV 79 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccccccccccCCCcCCccccccCCCCcCCCCCCcHhHHHHHHhcCCC-CceeCCCCEEE
Confidence 489999999999999999942 1111 1111 11234668999999999999754 34999999999
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHhCCCeEEEecCCCCCCCC----------hHHHHHHHHHhcCCeEEEEeccCCCCCC
Q 040133 261 AFRVFTDAQVSYTSWFLDAFNYAIATNIDVLNLSIGGPDYLD----------LPFIEKIWEITANNIIMVSAIGNDGPLY 330 (1013)
Q Consensus 261 ~vrV~~~~g~~~~s~il~Ai~~Ai~~gadVINlS~G~~~~~~----------~~~~~ai~~a~~~GIivVaAAGN~G~~~ 330 (1013)
.+|+++..+....++++++|+||++++++|||+|||...... ..+.+++.++.++|++||+||||+|...
T Consensus 80 ~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 80 SYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred EEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence 999998876668899999999999999999999999643211 2456677778889999999999999643
Q ss_pred --------------------CCCCCCCCCCCceEEeeeecCCCccccCCCCCCccccCCCCCCCcceEEecCCceee---
Q 040133 331 --------------------GTLNNPADQSDVIGVGGIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMG--- 387 (1013)
Q Consensus 331 --------------------~~i~~PA~~~~VItVGAvd~~g~~a~fSs~G~st~~~P~~~G~~KpDI~APG~~I~S--- 387 (1013)
..+.+|+..+++|+|||++.++.++.||++|.. ++|++|||+++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~~~~~~~~~~S~~g~~-----------~~~~~apG~~~~~~~~ 228 (294)
T cd07482 160 SNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSATDNNGNLSSFSNYGNS-----------RIDLAAPGGDFLLLDQ 228 (294)
T ss_pred ccccccccccccccccccCCcceecccccCceEEEEeeCCCCCcCccccCCCC-----------cceEECCCCCcccccc
Confidence 146789999999999999999999999999853 6899999988741
Q ss_pred -------------------ecCCCCeeeeCCchhHHHHHHHHHHHHHHhCCCCCcCCCCCH-HHHHHHHHhc
Q 040133 388 -------------------SKISTGCKSLSGTSVASPVVAGVVCLLVSVIPENNRKNILNP-ASMKQALVEG 439 (1013)
Q Consensus 388 -------------------t~~~~~y~~~sGTSmAAP~VAGvaALLls~~P~~~~~~~ltp-~~VK~~L~~T 439 (1013)
....+.|..++|||||||+|||++|||++++|. +++ .+||++|++|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~------~~~~~~v~~~L~~T 294 (294)
T cd07482 229 YGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPL------KKPPDEAIRILYNT 294 (294)
T ss_pred cCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCC------CCcHHHHHHHHhhC
Confidence 233456888999999999999999999999999 898 9999999986
No 36
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.4e-38 Score=334.92 Aligned_cols=214 Identities=26% Similarity=0.361 Sum_probs=184.4
Q ss_pred CcEEEEEcCCCCCCCCCcccccc-cccC------CCCCCCCCCCCCcchhhhhhhccCCCcccccCCCeEEEEEEecCCC
Q 040133 197 KVKMAIFDTGIRENHPHFRNIKE-RTNW------TNEDTLNDNLGHGTFVAGVVAGQDAECLGFAPDTEIYAFRVFTDAQ 269 (1013)
Q Consensus 197 GV~VaVIDTGId~~Hpdl~~i~~-~~~~------~~~~~~~D~~gHGThVAGIIAg~~~~~~GVAP~A~I~~vrV~~~~g 269 (1013)
||+||||||||+.+||+|.+... ...+ ...+...|..||||||||+|++. +|+++|+.+|+++..+
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~-------~p~~~i~~~~v~~~~~ 73 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALDGEVTIDLEIIVVSAEGGDKDGHGTACAGIIKKY-------APEAEIGSIKILGEDG 73 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccccccccccccccCCCCCCCCCCcHHHHHHHHHcc-------CCCCeEEEEEEeCCCC
Confidence 79999999999999999996433 2222 22345567889999999999864 6999999999998887
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEecCCCCCCC-ChHHHHHHHHHhcCCeEEEEeccCCCCCCCCCCCCCCCCCceEEeee
Q 040133 270 VSYTSWFLDAFNYAIATNIDVLNLSIGGPDYL-DLPFIEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGI 348 (1013)
Q Consensus 270 ~~~~s~il~Ai~~Ai~~gadVINlS~G~~~~~-~~~~~~ai~~a~~~GIivVaAAGN~G~~~~~i~~PA~~~~VItVGAv 348 (1013)
.+..+++++||+|+++++++|||||||..... ...+.+++.++.++|+++|+||||++... .+|+..++||+||+.
T Consensus 74 ~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~---~~Pa~~~~vi~V~~~ 150 (222)
T cd07492 74 RCNSFVLEKALRACVENDIRIVNLSLGGPGDRDFPLLKELLEYAYKAGGIIVAAAPNNNDIG---TPPASFPNVIGVKSD 150 (222)
T ss_pred CcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCCcCHHHHHHHHHHHHCCCEEEEECCCCCCCC---CCCccCCceEEEEec
Confidence 77888999999999999999999999986542 34567888888899999999999998642 349999999999999
Q ss_pred ecCCCccccCCCCCCccccCCCCCCCcceEEecCCceeeecCCCCeeeeCCchhHHHHHHHHHHHHHHhCCCCCcCCCCC
Q 040133 349 DYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASPVVAGVVCLLVSVIPENNRKNILN 428 (1013)
Q Consensus 349 d~~g~~a~fSs~G~st~~~P~~~G~~KpDI~APG~~I~St~~~~~y~~~sGTSmAAP~VAGvaALLls~~P~~~~~~~lt 428 (1013)
+..+..+.| +. ++|++|||.+|.++...+.|..++|||||||+|||++|||++++|+ |+
T Consensus 151 ~~~~~~~~~---~~------------~~~~~apg~~i~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~------l~ 209 (222)
T cd07492 151 TADDPKSFW---YI------------YVEFSADGVDIIAPAPHGRYLTVSGNSFAAPHVTGMVALLLSEKPD------ID 209 (222)
T ss_pred CCCCCcccc---cC------------CceEEeCCCCeEeecCCCCEEEeccHHHHHHHHHHHHHHHHHhCCC------CC
Confidence 877665443 32 6899999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHhccc
Q 040133 429 PASMKQALVEGAA 441 (1013)
Q Consensus 429 p~~VK~~L~~TA~ 441 (1013)
++|||++|++||+
T Consensus 210 ~~~v~~~L~~tA~ 222 (222)
T cd07492 210 ANDLKRLLQRLAV 222 (222)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999985
No 37
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=4.8e-38 Score=339.11 Aligned_cols=233 Identities=30% Similarity=0.411 Sum_probs=196.2
Q ss_pred CCCCcEEEEEcCCCCCCCCCcccccccccCC---C---CCCCCCCCCCcchhhhhhhccCCC--cccccCCCeEEEEEEe
Q 040133 194 TGAKVKMAIFDTGIRENHPHFRNIKERTNWT---N---EDTLNDNLGHGTFVAGVVAGQDAE--CLGFAPDTEIYAFRVF 265 (1013)
Q Consensus 194 tG~GV~VaVIDTGId~~Hpdl~~i~~~~~~~---~---~~~~~D~~gHGThVAGIIAg~~~~--~~GVAP~A~I~~vrV~ 265 (1013)
+|+||+|||||+|++.+||+|.+........ . .....|..+|||||||+|+|..++ ..|+||+|+|+.+|++
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~vagiiag~~~~~~~~GiAp~a~i~~~~~~ 80 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEASYYVAVNDAGYASNGDGDSHGTHVAGVIAAARDGGGMHGVAPDATLYSARAS 80 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccccccccccccCCCCCCCCChHHHHHHHHhcCcCCCCcccCCcCCEEEEEecc
Confidence 6999999999999999999999643322211 1 134567789999999999998654 6799999999999999
Q ss_pred cCCC-CCchHHHHHHHHHHHhCCCeEEEecCCCCCC--------------CChHHHHHHHHHhcCCeEEEEeccCCCCCC
Q 040133 266 TDAQ-VSYTSWFLDAFNYAIATNIDVLNLSIGGPDY--------------LDLPFIEKIWEITANNIIMVSAIGNDGPLY 330 (1013)
Q Consensus 266 ~~~g-~~~~s~il~Ai~~Ai~~gadVINlS~G~~~~--------------~~~~~~~ai~~a~~~GIivVaAAGN~G~~~ 330 (1013)
+..+ ......+.++++++++.+++|||+|||.... ....+.+.+..+.++|+++|+||||++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~ 160 (267)
T cd04848 81 ASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQAN 160 (267)
T ss_pred CCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCC
Confidence 8765 5667889999999999999999999997652 334566778888899999999999998643
Q ss_pred CCC-------CCCCCCCCceEEeeeecCCCcccc--CCCCCCccccCCCCCCCcceEEecCCceeeecC--CCCeeeeCC
Q 040133 331 GTL-------NNPADQSDVIGVGGIDYNDHIASF--SSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKI--STGCKSLSG 399 (1013)
Q Consensus 331 ~~i-------~~PA~~~~VItVGAvd~~g~~a~f--Ss~G~st~~~P~~~G~~KpDI~APG~~I~St~~--~~~y~~~sG 399 (1013)
... ..|+..+++|+||+++.++....+ |++|.. ....+++|||.+|.+... ...|..++|
T Consensus 161 ~~~~~~~~~~~~~~~~~~vi~Vga~~~~~~~~~~~~s~~~~~---------~~~~~~~apG~~i~~~~~~~~~~~~~~~G 231 (267)
T cd04848 161 PSLAAAALPYLEPELEGGWIAVVAVDPNGTIASYSYSNRCGV---------AANWCLAAPGENIYSTDPDGGNGYGRVSG 231 (267)
T ss_pred CccccccccccCccccCCEEEEEEecCCCCcccccccccchh---------hhhheeecCcCceeecccCCCCcccccce
Confidence 322 347778999999999999999988 998842 124679999999999988 678999999
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCcCCCCCHHHHHHHHHhccc
Q 040133 400 TSVASPVVAGVVCLLVSVIPENNRKNILNPASMKQALVEGAA 441 (1013)
Q Consensus 400 TSmAAP~VAGvaALLls~~P~~~~~~~ltp~~VK~~L~~TA~ 441 (1013)
||||||+|||++||+++++|+ +++++||++|++||+
T Consensus 232 TS~Aap~vaG~~Al~~~~~p~------l~~~~v~~~l~~tA~ 267 (267)
T cd04848 232 TSFAAPHVSGAAALLAQKFPW------LTADQVRQTLLTTAT 267 (267)
T ss_pred eEchHHHHHHHHHHHHHHCCC------CCHHHHHHHHHhhcC
Confidence 999999999999999999999 999999999999985
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-34 Score=331.96 Aligned_cols=359 Identities=26% Similarity=0.363 Sum_probs=249.3
Q ss_pred CCCCcchhhhhhhccCCC---cccccCCCeEEEEEEecCCCC--CchHHHHHHHHHHHhCCCeEEEecCCCCCCCC--hH
Q 040133 232 NLGHGTFVAGVVAGQDAE---CLGFAPDTEIYAFRVFTDAQV--SYTSWFLDAFNYAIATNIDVLNLSIGGPDYLD--LP 304 (1013)
Q Consensus 232 ~~gHGThVAGIIAg~~~~---~~GVAP~A~I~~vrV~~~~g~--~~~s~il~Ai~~Ai~~gadVINlS~G~~~~~~--~~ 304 (1013)
...||||||||++|+... ..||||+|+|+++++-+..-. .+...+.+|+..++++++||||||+|.+.... ..
T Consensus 309 Sg~HGTHVAgIa~anhpe~p~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a~~pn~GR 388 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETPELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDAHLPNSGR 388 (1304)
T ss_pred CCCCcceehhhhccCCCCCccccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccCCCCCcch
Confidence 456999999999998653 689999999999999654321 23346889999999999999999999764322 24
Q ss_pred HHHHHHHHh-cCCeEEEEeccCCCCCCCCCCCCCC-CCCceEEeeeec--------------CCCccccCCCCCCccccC
Q 040133 305 FIEKIWEIT-ANNIIMVSAIGNDGPLYGTLNNPAD-QSDVIGVGGIDY--------------NDHIASFSSRGMSTWEIP 368 (1013)
Q Consensus 305 ~~~ai~~a~-~~GIivVaAAGN~G~~~~~i~~PA~-~~~VItVGAvd~--------------~g~~a~fSs~G~st~~~P 368 (1013)
+.+.+.+++ ++|+++|+||||+|+...+++.|+. ...+|+|||.-. .+..-.||||| |
T Consensus 389 viEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a~y~~~e~vp~~~YtWsSRg------P 462 (1304)
T KOG1114|consen 389 VIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQAEYSVREPVPSNPYTWSSRG------P 462 (1304)
T ss_pred HHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHhhhhhhccCCCCccccccCC------C
Confidence 667777765 4699999999999999999999876 568999999743 24567899999 7
Q ss_pred CCCCCCcceEEecCCceeeecC--CCCeeeeCCchhHHHHHHHHHHHHHHhCCCCCcCCCCCHHHHHHHHHhccccCCCC
Q 040133 369 HGYGRVKPDVVAYGREIMGSKI--STGCKSLSGTSVASPVVAGVVCLLVSVIPENNRKNILNPASMKQALVEGAAKLSGP 446 (1013)
Q Consensus 369 ~~~G~~KpDI~APG~~I~St~~--~~~y~~~sGTSmAAP~VAGvaALLls~~P~~~~~~~ltp~~VK~~L~~TA~~~~~~ 446 (1013)
+.+|...+.|+|||+.|.+... -.+...|+|||||+|+++|.+|||+|.... .+..+||..||.+|++||.++++.
T Consensus 463 ~~DG~lGVsi~APggAiAsVP~~tlq~~qLMNGTSMsSP~acG~IAllLSgLKa--~ni~ytpysVrrAlenTa~~l~~i 540 (1304)
T KOG1114|consen 463 CLDGDLGVSISAPGGAIASVPQYTLQNSQLMNGTSMSSPSACGAIALLLSGLKA--QNIPYTPYSVRRALENTATKLGDI 540 (1304)
T ss_pred CcCCCcceEEecCCccccCCchhhhhhhhhhCCcccCCccccchHHHHHHHHHh--cCCCCcHHHHHHHHHhcccccCcc
Confidence 8899999999999999986532 345678999999999999999999998865 556699999999999999999999
Q ss_pred CCCCccccccCHHHHHHHHHhcCCCcccCCccccc-CCCCCCCCcccccccC-----CCccEEEEEEeecCC----CCC-
Q 040133 447 NMYEQGAGRVDLLESYEILKNYQPRASIFPSVLDY-TDCPYSWPFCRQPLYA-----GAMPVIFNVTILNGW----EGN- 515 (1013)
Q Consensus 447 ~~~~~G~G~lna~~Av~~l~~~~p~~~~~p~~l~~-~~~~~~~p~~~~~~~~-----g~~pvt~n~ti~n~~----~g~- 515 (1013)
+.+.+|.|++++++|++.+.+.. ..+|..+.| +..- --.|+..+|. -..|..+++.+.+-+ +..
T Consensus 541 d~faqG~GmlqVdkAyEyL~q~~---~~f~~~l~f~~v~V--gN~~srGIyLRep~~~~~p~e~~i~VePiF~~~~e~~k 615 (1304)
T KOG1114|consen 541 DSFAQGQGMLQVDKAYEYLAQSD---FSFPNALGFINVNV--GNSCSRGIYLREPTQVCSPSEHTIGVEPIFENGEENEK 615 (1304)
T ss_pred chhccCcceeehhHHHHHHHHhh---hcCCccceeEEEee--ccccccceEecCCcccCCccccceeccccccCcccccc
Confidence 99999999999999999999875 455666666 1100 0122333331 122344444444333 111
Q ss_pred ---ee----EEEEEcceeeeec-----ccEEEEEEEEcCCCccceeeEEeEEEEEEEcCCCCCCCCCcceeEEEEEEEEE
Q 040133 516 ---LL----NIRFTYSEVIWPW-----TGYLALHMQIKEEGAKFSGEIEGNVSVSVHSPPARGEKSSRRCTCMLQLKLKV 583 (1013)
Q Consensus 516 ---~~----~v~~s~s~v~~p~-----~G~~~v~vtv~~~~~~f~g~~~G~v~~tv~s~~~~~~~~~~~~~~~~~v~v~v 583 (1013)
.. .+..+.+=|-.|. .+.-.+-|+|+|.+.. .|..-+.|.---... ..+..-++|||+| |
T Consensus 616 eki~Fe~~L~L~st~pwVq~p~~l~l~~~~R~i~VrVDpt~l~-~G~hy~eV~gyD~~~------p~~gplFrIPVTV-i 687 (1304)
T KOG1114|consen 616 EKISFEVQLSLASTQPWVQCPEYLMLANQGRGINVRVDPTGLA-PGVHYTEVLGYDTAN------PSRGPLFRIPVTV-I 687 (1304)
T ss_pred ccccceeeEeeecCCcceeCchhheeccCCceeEEEECCcCCC-CCcceEEEEEeecCC------cccCceEEeeeEE-E
Confidence 11 1111111111111 1222466888888654 243333321111111 2234446666663 2
Q ss_pred ecCCCCCCcceeeee----eecCCCCCCCcCCCCCCC
Q 040133 584 VPTPPRSKRVLWDQF----HSIKYPPGYIPRDSLDVR 616 (1013)
Q Consensus 584 ~p~p~r~~r~l~dq~----h~~~yp~g~~prd~l~~~ 616 (1013)
.|.- +-=||| -++.|-||+|.|+++.++
T Consensus 688 ~P~~-----v~~~~~t~~f~~~~F~pg~i~R~FievP 719 (1304)
T KOG1114|consen 688 KPKV-----VANDQYTLRFVSVEFEPGLIERRFIEVP 719 (1304)
T ss_pred cccc-----ccCCCCccccccccccCCceeeeeEecC
Confidence 3322 122333 336788999999999998
No 39
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.2e-33 Score=299.62 Aligned_cols=225 Identities=24% Similarity=0.257 Sum_probs=173.1
Q ss_pred EEEcCCCCCCCCCccc-ccccccCCCCCCCCCCCCCcchhhhhhhccCCCcccccCCCeEEEEEEecCCCCCchHHHHHH
Q 040133 201 AIFDTGIRENHPHFRN-IKERTNWTNEDTLNDNLGHGTFVAGVVAGQDAECLGFAPDTEIYAFRVFTDAQVSYTSWFLDA 279 (1013)
Q Consensus 201 aVIDTGId~~Hpdl~~-i~~~~~~~~~~~~~D~~gHGThVAGIIAg~~~~~~GVAP~A~I~~vrV~~~~g~~~~s~il~A 279 (1013)
+++|.+..+.++.+.. ...+..+... ...|.++|||||||||||.. |++|+++++..++... ..+.+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~HGThVAgiiag~~----~~~p~a~~~~~~~~~~----~~~~~~~~ 75 (247)
T cd07488 5 FLWDKNDSKNAPNTLAAVFIRNNPRFG-RNNTFDDHATLVASIMGGRD----GGLPAVNLYSSAFGIK----SNNGQWQE 75 (247)
T ss_pred cccccccccCccceeeeeecccccccc-CCCCCCCHHHHHHHHHHhcc----CCCCccceehhhhCCC----CCCccHHH
Confidence 4688888888776532 2223333332 45688999999999999974 5679999987655222 22335667
Q ss_pred HHHH--HhCCCeEEEecCCCCCCCC--------hHHHHHHHHHhcC-CeEEEEeccCCCCC---CCCCCCCCCCCCceEE
Q 040133 280 FNYA--IATNIDVLNLSIGGPDYLD--------LPFIEKIWEITAN-NIIMVSAIGNDGPL---YGTLNNPADQSDVIGV 345 (1013)
Q Consensus 280 i~~A--i~~gadVINlS~G~~~~~~--------~~~~~ai~~a~~~-GIivVaAAGN~G~~---~~~i~~PA~~~~VItV 345 (1013)
+.|+ .+.+++|||||||++.... ..+..+++++..+ |+++|+||||+|.+ +..+..|+..+++|+|
T Consensus 76 i~~~~~~~~gv~VINmS~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItV 155 (247)
T cd07488 76 CLEAQQNGNNVKIINHSYGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVV 155 (247)
T ss_pred HHHHHHhcCCceEEEeCCccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEE
Confidence 7777 6789999999999764332 1345667776666 99999999999974 3456789999999999
Q ss_pred eeeecCCCccc---cCCCCCCccccCCCCCCCcceEEecCCceeeecCCCCeeeeCCchhHHHHHHHHHHHHHHhCCCCC
Q 040133 346 GGIDYNDHIAS---FSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASPVVAGVVCLLVSVIPENN 422 (1013)
Q Consensus 346 GAvd~~g~~a~---fSs~G~st~~~P~~~G~~KpDI~APG~~I~St~~~~~y~~~sGTSmAAP~VAGvaALLls~~P~~~ 422 (1013)
||++..+.++. ||+++.. |..+++.||||+|||++|.+ ..+.|..++|||||||||||++|||++++|+..
T Consensus 156 GA~d~~g~~~~~s~~sn~~~~----~~~~~~~~~di~APG~~i~s--~~~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~ 229 (247)
T cd07488 156 GSTDRNGDRFFASDVSNAGSE----INSYGRRKVLIVAPGSNYNL--PDGKDDFVSGTSFSAPLVTGIIALLLEFYDRQY 229 (247)
T ss_pred EEecCCCCcceecccccccCC----CCCCCCceeEEEEeeeeEEC--CCCceeeecccchHHHHHHHHHHHHHHHChhhh
Confidence 99999998754 4665532 56678889999999999998 677899999999999999999999999999976
Q ss_pred cCCCCCHHHHHHHHHhcc
Q 040133 423 RKNILNPASMKQALVEGA 440 (1013)
Q Consensus 423 ~~~~ltp~~VK~~L~~TA 440 (1013)
....++--++|.++..|+
T Consensus 230 ~~~~~~~~~~~~~~~~~~ 247 (247)
T cd07488 230 KKGNNNLIALRALVSSSV 247 (247)
T ss_pred hCcchhHHHHHHHHhccC
Confidence 566677777888887663
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=100.00 E-value=7.6e-32 Score=283.19 Aligned_cols=224 Identities=36% Similarity=0.557 Sum_probs=188.2
Q ss_pred cEEEEEcCCCCCCCCCcc----cccccccCCCC----CCCCCCCCCcchhhhhhhccCCC--cccccCCCeEEEEEEecC
Q 040133 198 VKMAIFDTGIRENHPHFR----NIKERTNWTNE----DTLNDNLGHGTFVAGVVAGQDAE--CLGFAPDTEIYAFRVFTD 267 (1013)
Q Consensus 198 V~VaVIDTGId~~Hpdl~----~i~~~~~~~~~----~~~~D~~gHGThVAGIIAg~~~~--~~GVAP~A~I~~vrV~~~ 267 (1013)
|+|||||+|++.+|++|. ......++... ....+..+|||||||+|++...+ ..|+||+++|+.+|+...
T Consensus 1 v~VaiiD~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HGt~va~~i~~~~~~~~~~g~a~~a~i~~~~~~~~ 80 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGLFGGGDGGNDDDDNENGPTDPDDGNGHGTHVAGIIAASANNGGGVGVAPGAKLIPVKVLDG 80 (241)
T ss_pred CEEEEEeCCCCCCCcchhccccCcccccccccCcCCCCCCCCCCCcHHHHHHHHhcCCCCCCCEEeCCCCEEEEEEEecC
Confidence 689999999999999852 22222222211 23456789999999999997654 379999999999999987
Q ss_pred CCCCchHHHHHHHHHHH-hCCCeEEEecCCCCCCC-ChHHHHHHHHHhcC-CeEEEEeccCCCCCCCC-CCCCCCCCCce
Q 040133 268 AQVSYTSWFLDAFNYAI-ATNIDVLNLSIGGPDYL-DLPFIEKIWEITAN-NIIMVSAIGNDGPLYGT-LNNPADQSDVI 343 (1013)
Q Consensus 268 ~g~~~~s~il~Ai~~Ai-~~gadVINlS~G~~~~~-~~~~~~ai~~a~~~-GIivVaAAGN~G~~~~~-i~~PA~~~~VI 343 (1013)
........+++++++++ .++++|||+|||..... ...+.+.+.++..+ |+++|+|+||++..... ...|+..+++|
T Consensus 81 ~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi 160 (241)
T cd00306 81 DGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSPPSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVI 160 (241)
T ss_pred CCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceE
Confidence 76677888999999999 89999999999987542 44677888888888 99999999999975322 46899999999
Q ss_pred EEeeeecCCCcc-ccCCCCCCccccCCCCCCCcceEEecCCceee--ecCCCCeeeeCCchhHHHHHHHHHHHHHHhCCC
Q 040133 344 GVGGIDYNDHIA-SFSSRGMSTWEIPHGYGRVKPDVVAYGREIMG--SKISTGCKSLSGTSVASPVVAGVVCLLVSVIPE 420 (1013)
Q Consensus 344 tVGAvd~~g~~a-~fSs~G~st~~~P~~~G~~KpDI~APG~~I~S--t~~~~~y~~~sGTSmAAP~VAGvaALLls~~P~ 420 (1013)
+||+++..+... .++++|. +||+.|||.++.. ......+..++|||+|||+|||++||+++++|+
T Consensus 161 ~Vga~~~~~~~~~~~~~~~~------------~~~~~apg~~~~~~~~~~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~ 228 (241)
T cd00306 161 AVGAVDRDGTPASPSSNGGA------------GVDIAAPGGDILSSPTTGGGGYATLSGTSMAAPIVAGVAALLLSANPD 228 (241)
T ss_pred EEEecCcCCCccCCcCCCCC------------CceEEeCcCCccCcccCCCCCeEeeccHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999888 7887775 8999999999987 455678999999999999999999999999999
Q ss_pred CCcCCCCCHHHHHHHHHhc
Q 040133 421 NNRKNILNPASMKQALVEG 439 (1013)
Q Consensus 421 ~~~~~~ltp~~VK~~L~~T 439 (1013)
+++.++|++|+.|
T Consensus 229 ------~~~~~~~~~l~~t 241 (241)
T cd00306 229 ------LTPAQVKAALLST 241 (241)
T ss_pred ------CCHHHHHHHHhhC
Confidence 9999999999875
No 41
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.4e-29 Score=268.27 Aligned_cols=390 Identities=21% Similarity=0.241 Sum_probs=263.9
Q ss_pred CcccCCcEEEEeCCCCChHHHHHHHHhhcCCCCCchhhccCCC---ccccceee-eEEecccccHHHHHHHHcCCCceEE
Q 040133 45 TRISRNNYIVRFREYKTAEDHCSYLKSRITPDGWKWIERKNPA---SKYPTDFG-LISVEESAKQGLIEEIERLNLVKDV 120 (1013)
Q Consensus 45 ~~~v~~~yIV~fk~~~~~~~~~~~l~~~~~~~~~~~v~r~~~~---~~~~~~f~-v~~v~~~~~~~~i~~L~~~P~V~~V 120 (1013)
..+..+.|+|.|+++...+..++...+ .+-. .|..+. ..|..... ++.-.......--++|+++|.|+-+
T Consensus 27 ~~vftnhflv~l~~g~g~~~ah~va~~-hgf~-----nrg~~~a~d~eyhf~h~~l~har~rrsl~h~~~l~~dp~v~~a 100 (629)
T KOG3526|consen 27 VDVFTNHFLVHLKEGGGLEDAHRVAKR-HGFI-----NRGQVAASDNEYHFVHPALVHARTRRSLGHHAKLHNDPEVKMA 100 (629)
T ss_pred cceeeeeEEEEEeccCChHHHHHHHHH-hCcc-----ccccccccCceeeeeccccchhhhhcccchhhhhccChhHhhh
Confidence 356689999999999777655544332 2211 111110 11221111 1111111112234679999999999
Q ss_pred EeCceeeecccCCcccCCCCCCCccccccccccCcccccccccCCcccccccccccc-ccccccCchhhhhCCCCCCCcE
Q 040133 121 SVDSSYKRGLLGGAFEDGKKRPGKIFTSMSFNEGEHYTATTSNCTINWRRHLLMQRS-QVTSLFGADALWGKGYTGAKVK 199 (1013)
Q Consensus 121 epd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~W~l~~~~~~~-~~~~~i~a~~aW~~g~tG~GV~ 199 (1013)
+.+.-+.+.... -++- .. ++ ....++....||.+.+..|.. ...-++|+.++|++|++|++|+
T Consensus 101 ~qq~gf~r~krg-------yrp~---~~--fd----~~~~dplf~~qwylkntgqaggk~rldlnv~~awa~g~tgknvt 164 (629)
T KOG3526|consen 101 LQQEGFDRKKRG-------YRPI---NE--FD----INMNDPLFTKQWYLKNTGQAGGKPRLDLNVAEAWALGYTGKNVT 164 (629)
T ss_pred hhccccchhhcc-------CCch---hh--hc----cccCCcccceeeeeecccccCCcccccccHHHHHhhcccCCCce
Confidence 887666553220 0110 00 11 112467888999999988754 4556799999999999999999
Q ss_pred EEEEcCCCCCCCCCccc---ccccccCCCCCCC-----CC--CCCCcchhhhhhhccCC-C--cccccCCCeEEEEEEec
Q 040133 200 MAIFDTGIRENHPHFRN---IKERTNWTNEDTL-----ND--NLGHGTFVAGVVAGQDA-E--CLGFAPDTEIYAFRVFT 266 (1013)
Q Consensus 200 VaVIDTGId~~Hpdl~~---i~~~~~~~~~~~~-----~D--~~gHGThVAGIIAg~~~-~--~~GVAP~A~I~~vrV~~ 266 (1013)
+||+|.|||+-||||+. ....++|..+++. .| -+.|||.|||-+++..+ + ..|||.+.++..+|+++
T Consensus 165 taimddgvdymhpdlk~nynaeasydfssndpfpyprytddwfnshgtrcagev~aardngicgvgvaydskvagirmld 244 (629)
T KOG3526|consen 165 TAIMDDGVDYMHPDLKSNYNAEASYDFSSNDPFPYPRYTDDWFNSHGTRCAGEVVAARDNGICGVGVAYDSKVAGIRMLD 244 (629)
T ss_pred EEeecCCchhcCcchhcccCceeecccccCCCCCCCcccchhhhccCccccceeeeeccCCceeeeeeeccccceeeecC
Confidence 99999999999999993 3445666555431 22 26899999998876544 4 47999999999999986
Q ss_pred CCCCCchHHHHHHHHHHHh-CCCeEEEecCCCCCC------CChHHHHHHHHHhc-----CCeEEEEeccCCCCC-CCCC
Q 040133 267 DAQVSYTSWFLDAFNYAIA-TNIDVLNLSIGGPDY------LDLPFIEKIWEITA-----NNIIMVSAIGNDGPL-YGTL 333 (1013)
Q Consensus 267 ~~g~~~~s~il~Ai~~Ai~-~gadVINlS~G~~~~------~~~~~~~ai~~a~~-----~GIivVaAAGN~G~~-~~~i 333 (1013)
. .++.++++|-....+ ..++|.+.|||..+. .......++.+-+. .|-|+|+|+|..|.. .+..
T Consensus 245 q---pymtdlieansmghep~kihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcnc 321 (629)
T KOG3526|consen 245 Q---PYMTDLIEANSMGHEPSKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNC 321 (629)
T ss_pred C---chhhhhhhhcccCCCCceEEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCC
Confidence 5 466777766443332 478999999996532 12233444444443 368999999999863 3455
Q ss_pred CCCCCCCCceEEeeeecCCCccccCCCCCCccccCCCCCCCcceEEecCCceeeecCCCC-eeeeCCchhHHHHHHHHHH
Q 040133 334 NNPADQSDVIGVGGIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTG-CKSLSGTSVASPVVAGVVC 412 (1013)
Q Consensus 334 ~~PA~~~~VItVGAvd~~g~~a~fSs~G~st~~~P~~~G~~KpDI~APG~~I~St~~~~~-y~~~sGTSmAAP~VAGvaA 412 (1013)
...|.+.+.|++-+.-++++-+-|-..+++|.....+.|...| -..+.++..-+. ....||||.|||-.||+.|
T Consensus 322 dgyaasmwtisinsaindg~nahydescsstlastfsng~rnp-----etgvattdlyg~ct~~hsgtsaaapeaagvfa 396 (629)
T KOG3526|consen 322 DGYAASMWTISINSAINDGENAHYDESCSSTLASTFSNGGRNP-----ETGVATTDLYGRCTRSHSGTSAAAPEAAGVFA 396 (629)
T ss_pred ccchhheEEEEeehhhcCCccccccchhhHHHHHHhhcCCcCC-----CcceeeeccccceecccCCccccCccccceee
Confidence 6678889999999888888777665555554433333343333 334555555444 4579999999999999999
Q ss_pred HHHHhCCCCCcCCCCCHHHHHHHHHhccccCCCCC----------------CCCccccccCHHHHHHHHHhcCC
Q 040133 413 LLVSVIPENNRKNILNPASMKQALVEGAAKLSGPN----------------MYEQGAGRVDLLESYEILKNYQP 470 (1013)
Q Consensus 413 LLls~~P~~~~~~~ltp~~VK~~L~~TA~~~~~~~----------------~~~~G~G~lna~~Av~~l~~~~p 470 (1013)
|.++++|. ||+.+++.+-.-|+.+..-.+ ..-+|||.+|+.+.+.+++.|+.
T Consensus 397 laleanp~------ltwrd~qhltvltskrnslfd~~~rf~w~mngvglefnhlfgfgvldagamv~lak~wkt 464 (629)
T KOG3526|consen 397 LALEANPS------LTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEFNHLFGFGVLDAGAMVMLAKAWKT 464 (629)
T ss_pred eeeccCCC------cchhhhhheeeeecccchhhcccceEEEeccccceeeecccccccccHHHHHHHHHHhcc
Confidence 99999999 999999999888876542211 12369999999999999999883
No 42
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.5e-25 Score=255.33 Aligned_cols=264 Identities=32% Similarity=0.475 Sum_probs=215.2
Q ss_pred cCchhhhhC--CCCCCCcEEEEEcCCCCCCCCCcccccc-cccCCCCCC---CCCCCCCcchhhhhhhcc--C--CCccc
Q 040133 183 FGADALWGK--GYTGAKVKMAIFDTGIRENHPHFRNIKE-RTNWTNEDT---LNDNLGHGTFVAGVVAGQ--D--AECLG 252 (1013)
Q Consensus 183 i~a~~aW~~--g~tG~GV~VaVIDTGId~~Hpdl~~i~~-~~~~~~~~~---~~D~~gHGThVAGIIAg~--~--~~~~G 252 (1013)
+.....|.. +++|+||+|+|+|+||+..||+|.+... ..+|..... ..|..+|||||+|+|++. . ....|
T Consensus 127 ~~~~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~hGt~vag~ia~~~~~~~~~~~g 206 (508)
T COG1404 127 ISVGALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVAGGDFVDGDPEPPFLDDNGHGTHVAGTIAAVIFDNGAGVAG 206 (508)
T ss_pred cccccccccccCCCCCCeEEEEeccCCCCCChhhhcccccccccccCCCCCCCCCCCCCcceeeeeeeeecccCCCcccc
Confidence 456677887 8999999999999999999999986432 245544443 468899999999999983 1 23789
Q ss_pred ccCCCeEEEEEEecCC-CCCchHHHHHHHHHHHhCC--CeEEEecCCCC--CCCChHHHHHHHHHhcCC-eEEEEeccCC
Q 040133 253 FAPDTEIYAFRVFTDA-QVSYTSWFLDAFNYAIATN--IDVLNLSIGGP--DYLDLPFIEKIWEITANN-IIMVSAIGND 326 (1013)
Q Consensus 253 VAP~A~I~~vrV~~~~-g~~~~s~il~Ai~~Ai~~g--adVINlS~G~~--~~~~~~~~~ai~~a~~~G-IivVaAAGN~ 326 (1013)
++|+++++.++++... +....+.++++|.++++.+ +++||+|+|.. .........++..+...| +++|+++||.
T Consensus 207 ~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~~~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~ 286 (508)
T COG1404 207 VAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGND 286 (508)
T ss_pred ccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCCCccccccHHHHHHHHHHHHcCCEEEEEecccC
Confidence 9999999999999876 7788888999999999998 99999999975 223445667788877777 9999999999
Q ss_pred CCCCC--CCCCCCCCC--CceEEeeeecCCCccccCCCCCCccccCCCCCCCcceEEecCCceee-----ecCCCC--ee
Q 040133 327 GPLYG--TLNNPADQS--DVIGVGGIDYNDHIASFSSRGMSTWEIPHGYGRVKPDVVAYGREIMG-----SKISTG--CK 395 (1013)
Q Consensus 327 G~~~~--~i~~PA~~~--~VItVGAvd~~g~~a~fSs~G~st~~~P~~~G~~KpDI~APG~~I~S-----t~~~~~--y~ 395 (1013)
|.+.. ...+|+.+. .+|+||+++..+..+.||++|.. ..+|+++||.++.+ ...+.. +.
T Consensus 287 ~~~~~~~~~~~p~~~~~~~~i~v~a~~~~~~~~~~s~~g~~----------~~~~~~apg~~i~~~~~~~~~~~~~~~~~ 356 (508)
T COG1404 287 GSNASGGDLAYPASYPAPNVIAVGALDLSDTVASFSNDGSP----------TGVDIAAPGVNILSLSAVNTLPGDGADYV 356 (508)
T ss_pred CCCCccccccCCcccCCCceEEEecCCCCCccccccccCCC----------CCcceeCCCccccccccceeeeCCccceE
Confidence 87542 466788888 99999999999999999999952 25899999999987 666666 99
Q ss_pred eeCCchhHHHHHHHHHHHHHHhCC-CCCcCCCCCHHHHHHHHHhcccc-CCCCCCCCccccccCHHHHH
Q 040133 396 SLSGTSVASPVVAGVVCLLVSVIP-ENNRKNILNPASMKQALVEGAAK-LSGPNMYEQGAGRVDLLESY 462 (1013)
Q Consensus 396 ~~sGTSmAAP~VAGvaALLls~~P-~~~~~~~ltp~~VK~~L~~TA~~-~~~~~~~~~G~G~lna~~Av 462 (1013)
.++|||||+|+|+|++||+++.+| . +++.+++..+..++.. ........++.|..+...+.
T Consensus 357 ~~~Gts~a~p~v~g~aal~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (508)
T COG1404 357 TLSGTSMAAPHVSGVAALVLSANPNE------LTPAQVRNLIVTTAGLTPLSGVDNLVGGGLANLDAAA 419 (508)
T ss_pred eeccccccccHHHHHHHHHHccCccc------CCHHHHHHHHhhccccccCCccccccccCcccccccc
Confidence 999999999999999999999999 6 8999999998888873 22222334566666655543
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.79 E-value=1.6e-18 Score=198.19 Aligned_cols=166 Identities=25% Similarity=0.279 Sum_probs=125.7
Q ss_pred cccccCCCeEEEEEEecCCCCCchHHHHHHHHHHHhC---CCeEEEecCCCCCCCC-----hHHHHHHHHHhcCCeEEEE
Q 040133 250 CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIAT---NIDVLNLSIGGPDYLD-----LPFIEKIWEITANNIIMVS 321 (1013)
Q Consensus 250 ~~GVAP~A~I~~vrV~~~~g~~~~s~il~Ai~~Ai~~---gadVINlS~G~~~~~~-----~~~~~ai~~a~~~GIivVa 321 (1013)
..||||+|+|+.+++.+.. ...++.++.++++. +++|||+|||...... ..+.+++.++.++||.||+
T Consensus 83 ~~gvAP~a~i~~~~~~~~~----~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitvva 158 (361)
T cd04056 83 AGAIAPGANITLYFAPGTV----TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLA 158 (361)
T ss_pred HHhccCCCeEEEEEECCcC----ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 5899999999999997653 34567788888876 9999999999875431 3466778888899999999
Q ss_pred eccCCCCCCC---------CCCCCCCCCCceEEeeeecCCCcc--------------------ccCCCCCC-ccc-----
Q 040133 322 AIGNDGPLYG---------TLNNPADQSDVIGVGGIDYNDHIA--------------------SFSSRGMS-TWE----- 366 (1013)
Q Consensus 322 AAGN~G~~~~---------~i~~PA~~~~VItVGAvd~~g~~a--------------------~fSs~G~s-t~~----- 366 (1013)
||||+|.... ++.+|+++|+|++|||++...... .||++=+. .|.
T Consensus 159 AsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~~~~~~~~~~~~~~~~~~~~SGGG~S~~f~~P~yQ~~~~~ 238 (361)
T cd04056 159 ASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTGGTGSSAESTVWSSEGGWGGSGGGFSNYFPRPSYQSGAVL 238 (361)
T ss_pred eCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCCCcccccccccccccCCcccccCCcCCCCCCChhhhhccc
Confidence 9999997543 466899999999999997643322 23332111 111
Q ss_pred ------cCCCCCCCcceEEec---CCceeeecCCCCeeeeCCchhHHHHHHHHHHHHHHhCCC
Q 040133 367 ------IPHGYGRVKPDVVAY---GREIMGSKISTGCKSLSGTSVASPVVAGVVCLLVSVIPE 420 (1013)
Q Consensus 367 ------~P~~~G~~KpDI~AP---G~~I~St~~~~~y~~~sGTSmAAP~VAGvaALLls~~P~ 420 (1013)
.....||..|||+|. +.+.... ..+.+...+|||+|||++||++|||.|++..
T Consensus 239 ~~~~~~~~~~~gR~~PDVaa~a~~~~g~~i~-~~g~~~~~gGTS~aaP~~Ag~~Al~n~~~~~ 300 (361)
T cd04056 239 GLPPSGLYNGSGRGVPDVAANADPGTGYLVV-VNGQWYLVGGTSAAAPLFAGLIALINQARLA 300 (361)
T ss_pred CCCCCCCCCCCCCcCCeeecccCCCCCEEEE-ECCeEEeeCCccHHHHHHHHHHHHHHHHhhh
Confidence 123468999999998 4444332 3367888999999999999999999998864
No 44
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.7e-09 Score=126.18 Aligned_cols=286 Identities=21% Similarity=0.231 Sum_probs=184.3
Q ss_pred CCccccccccccccccccccCchhhhhCCCCCCCcEEEEEcCCCCCCCCCcccc---cccccCCCCC-------CCCCCC
Q 040133 164 CTINWRRHLLMQRSQVTSLFGADALWGKGYTGAKVKMAIFDTGIRENHPHFRNI---KERTNWTNED-------TLNDNL 233 (1013)
Q Consensus 164 ~~~~W~l~~~~~~~~~~~~i~a~~aW~~g~tG~GV~VaVIDTGId~~Hpdl~~i---~~~~~~~~~~-------~~~D~~ 233 (1013)
...+|.+.... ....++++..+|..+++|+++.|+|+|+|+...|+++.+. ...++....+ ......
T Consensus 4 ~~~~w~l~~~~---~~~~d~~v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~~~~~~s~d~~~~~~~p~~~~~~~~~~ 80 (431)
T KOG3525|consen 4 SIHMWYLNAQE---FPGSDLNVQNAWCKGYTGTRVSVTILDDGLECSHPDLRNNYDPLGSYDVNRHDNDPEPRCDGTNEN 80 (431)
T ss_pred ccceEEecCCc---cccccceeeeccccCCCCCceEEEEeeccccccCcccccccCcceeEeeecCCCCcccccCCCCcc
Confidence 34567765432 2245688999999999999999999999999999999853 2222222211 111247
Q ss_pred CCcchhhhhhhccCCC---cccccCCCeEEEEEEecCCCCCchHHHHHHHHHHH-hCCCeEEEecCCCCCC------CCh
Q 040133 234 GHGTFVAGVVAGQDAE---CLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAI-ATNIDVLNLSIGGPDY------LDL 303 (1013)
Q Consensus 234 gHGThVAGIIAg~~~~---~~GVAP~A~I~~vrV~~~~g~~~~s~il~Ai~~Ai-~~gadVINlS~G~~~~------~~~ 303 (1013)
.|||-||+-+++..++ ..|+++++++..+|++...-. +...+..... ...+++...|||..+. ...
T Consensus 81 ~~g~~Ca~~~a~~~~~~~C~vg~~~~~~~~g~~~l~~~v~----~~~~~~~~~~~~~~~di~scsw~pddd~~t~~~~~~ 156 (431)
T KOG3525|consen 81 KHGTRCAGCVAARANNLTCGVGVAYNATIGGIRMLAGCVS----DAVEAPSLGFGPCHIDIYSCSWGPDDDGKTCDGPGT 156 (431)
T ss_pred ccCCCCCcccccccCCCcCCCCcccCccccceeeeeeecc----cceecccccCCCCCceeecCcCCcccCCCcCCCCcc
Confidence 8999999999998644 589999999999999864321 1111211111 2357899999995421 111
Q ss_pred HHHHHHHHH-----hcCCeEEEEeccCCCCCCCCC--CCCCCCCCceEEeeeecCCCccccCCCCCCccccCCCCCCCcc
Q 040133 304 PFIEKIWEI-----TANNIIMVSAIGNDGPLYGTL--NNPADQSDVIGVGGIDYNDHIASFSSRGMSTWEIPHGYGRVKP 376 (1013)
Q Consensus 304 ~~~~ai~~a-----~~~GIivVaAAGN~G~~~~~i--~~PA~~~~VItVGAvd~~g~~a~fSs~G~st~~~P~~~G~~Kp 376 (1013)
....+...+ ..+|-++|+|.||.|...+.. ....+....++.+.++..+....|+-+..... .+.++-.
T Consensus 157 l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d~c~c~~y~~~i~t~~~~~~~~~~~~p~y~~~C~~~~--~s~~s~~-- 232 (431)
T KOG3525|consen 157 LAREALVYGRGCGRHGKGSIFVWASGNGGTCGDSCHCDGYTNSIYTLSISCATQCGKKPQYRERCASCL--ASTYSSG-- 232 (431)
T ss_pred hhhhhhhccccccccCCCCeeEEEecCccccccccccccccCcceecccccccccCCCccccccccccc--cccccCC--
Confidence 122333332 346889999999988643332 23334455566666766666544444433221 1111110
Q ss_pred eEEecC-CceeeecCC-CCeeeeCCchhHHHHHHHHHHHHHHhCCCCCcCCCCCHHHHHHHHHhccccCCCCC-------
Q 040133 377 DVVAYG-REIMGSKIS-TGCKSLSGTSVASPVVAGVVCLLVSVIPENNRKNILNPASMKQALVEGAAKLSGPN------- 447 (1013)
Q Consensus 377 DI~APG-~~I~St~~~-~~y~~~sGTSmAAP~VAGvaALLls~~P~~~~~~~ltp~~VK~~L~~TA~~~~~~~------- 447 (1013)
.|+ .-|..+... .......|||.++|+.||.+++.++++|. ++..++..+...++.......
T Consensus 233 ---~~~~~~~~~~~~~~~c~e~h~g~s~~~~~~a~~~~~~~~~~~~------ls~~d~~~l~~~~~~~~~~~~~~~~~n~ 303 (431)
T KOG3525|consen 233 ---GPTEECIVCTDPRHSCTEGHTGTSASAPLAAGIIALALEANPC------LSWRDSQHLIVLTSRPKVLLKGKWKSNG 303 (431)
T ss_pred ---CCcceeeeecCCCccccccCCCCcCccchhcchhhhhhccCcc------ccccchhhhhhhhcchhhccCCCceEec
Confidence 110 113344443 34557889999999999999999999999 899999999888887643211
Q ss_pred -----CCCccccccCHHHHHHHHHhcC
Q 040133 448 -----MYEQGAGRVDLLESYEILKNYQ 469 (1013)
Q Consensus 448 -----~~~~G~G~lna~~Av~~l~~~~ 469 (1013)
...+|+|++|+..-+.+++.+.
T Consensus 304 ~g~~~~h~~g~~~~~~~~~~~~~~~~~ 330 (431)
T KOG3525|consen 304 AGGLVSHLYGFGLLDAKALVSCAKTWT 330 (431)
T ss_pred CCceeeeeecccccCcchhhhhhccCc
Confidence 1256999999999888777444
No 45
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=6.2e-09 Score=130.01 Aligned_cols=236 Identities=23% Similarity=0.239 Sum_probs=134.3
Q ss_pred cccccCchhhhhCCCCCCCcEEEEEc-CCCCCCCCCcccccccccCCCCC-----CCCCCCCCcchhhhhhhccCCCccc
Q 040133 179 VTSLFGADALWGKGYTGAKVKMAIFD-TGIRENHPHFRNIKERTNWTNED-----TLNDNLGHGTFVAGVVAGQDAECLG 252 (1013)
Q Consensus 179 ~~~~i~a~~aW~~g~tG~GV~VaVID-TGId~~Hpdl~~i~~~~~~~~~~-----~~~D~~gHGThVAGIIAg~~~~~~G 252 (1013)
.....|+..+.+.|.+|+|++|||+| -|-.....|+.......+..... ......+|+||-+.-+.=.-.-..-
T Consensus 211 l~~~ynit~l~~~g~tGkG~tIaIid~yG~p~~~~dl~~Fd~~~Gip~~~~~~V~~ig~g~~~~~~g~~E~sLDVE~s~A 290 (1174)
T COG4934 211 LAKAYNITALYESGATGKGETIAIIDAYGDPYNNQDLYSFDQQYGIPNPILSRVTYIGPGIGSGTGGAEETSLDVEWSHA 290 (1174)
T ss_pred hhhhcceeecccCCCCCCCcEEEEEeccCCcccHHHHHHHHHhhCCCCCCceEEEEeCCCCCCCCCccccceeehhhhhc
Confidence 44456777888889999999999999 66554444443211111111110 1113467888877543222112456
Q ss_pred ccCCCeEEEEEEecCCCCCchHHHHHHHHHHHhCCC-eEEEecCCCCC-----C--CChHHHHHHHHHhcCCeEEEEecc
Q 040133 253 FAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNI-DVLNLSIGGPD-----Y--LDLPFIEKIWEITANNIIMVSAIG 324 (1013)
Q Consensus 253 VAP~A~I~~vrV~~~~g~~~~s~il~Ai~~Ai~~ga-dVINlS~G~~~-----~--~~~~~~~ai~~a~~~GIivVaAAG 324 (1013)
+||+|+|..+-.- . .....+..|+++....-. -++-.||+... . .-+.+....+.+.++||.+++|+|
T Consensus 291 ~AP~A~I~lvvap-~---~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~AASG 366 (1174)
T COG4934 291 MAPKANIDLVVAP-N---PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFAASG 366 (1174)
T ss_pred cCccCceEEEEcC-C---CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEEecc
Confidence 7999999887662 2 233344445554443221 23335665321 1 112234455667889999999999
Q ss_pred CCCCCC------CCCCCCCCCCCceEEee--ee----cCCCcc-----ccCCCCC---------C-----cc-ccC---C
Q 040133 325 NDGPLY------GTLNNPADQSDVIGVGG--ID----YNDHIA-----SFSSRGM---------S-----TW-EIP---H 369 (1013)
Q Consensus 325 N~G~~~------~~i~~PA~~~~VItVGA--vd----~~g~~a-----~fSs~G~---------s-----t~-~~P---~ 369 (1013)
..|... .++.+|++.|.|.+||+ +- ..+..- +++..|+ + .| +.. .
T Consensus 367 D~Gay~~~~~~~~sv~~PasSPYVtsVGG~~~~~~~~~~~g~f~~~aW~~~~~g~g~vgsggGyS~~f~~PwyQ~~~~~~ 446 (1174)
T COG4934 367 DSGAYDDTPTPYLSVNFPASSPYVTSVGGYPISNAKFTSNGSFTETAWGYSSYGPGSVGSGGGYSIFFPRPWYQDGPSVP 446 (1174)
T ss_pred cccccCCCcccceeecccCCCccEEeecCeeEEEEEEecCceeEEEccCcccccCccccCCCceeeeeccceeecccccC
Confidence 998643 35779999999999999 43 111111 1222221 0 00 000 0
Q ss_pred CCCCCcceE---EecCCceeeecCCCCeeeeCCchhHHHHHHHHHHHHHHhCC
Q 040133 370 GYGRVKPDV---VAYGREIMGSKISTGCKSLSGTSVASPVVAGVVCLLVSVIP 419 (1013)
Q Consensus 370 ~~G~~KpDI---~APG~~I~St~~~~~y~~~sGTSmAAP~VAGvaALLls~~P 419 (1013)
..+|.-||+ .+|...+.-... +......|||.|||+.||+.|++-|..-
T Consensus 447 ~~~r~i~dv~~~anp~~g~~~~~g-~~~~~~GGTS~AtPltAGiiAdi~q~~~ 498 (1174)
T COG4934 447 STGRLIPDVVAIANPYTGVVIVFG-NQTYVAGGTSLATPLTAGIIADIEQYIG 498 (1174)
T ss_pred CcceecCCccccccccCceEEEEC-cEEEEecccccccchHHHHHHHHHHHhc
Confidence 123333333 333333322222 3455788999999999999999999764
No 46
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=97.29 E-value=0.00098 Score=73.76 Aligned_cols=104 Identities=23% Similarity=0.342 Sum_probs=80.9
Q ss_pred CCCCcHHHHHHHHHHcCeEEEEcCCccccccCCCceeEEEecCCCcCCHHHHHHHHHHHhhCCCcEEEEeeeccccccce
Q 040133 626 HLHTNFHIMFNMLRDAGYYVETLGSPFTCFDAHQYGTLMLVDLEDEYFEEEIEKLSYDVLNTGLGLAVFSEWYNVETMVK 705 (1013)
Q Consensus 626 h~~tn~~~~~~~l~~~g~~~e~l~~~~tcf~~~~y~~l~~vd~e~~~~~~e~~~l~~~v~~~~l~~~v~~dwy~~~~~~~ 705 (1013)
+.-+.+..+.+.|++. |=|+.+.--..-. +.++.+|+|+.|..+|.++|+.+|.+.+ .+|-+|+++.|.+......
T Consensus 166 ~~~~~~~~l~~~L~~~-y~V~~~~l~~~~I-P~~~d~Lvi~~P~~~ls~~e~~~l~~yl-~~GG~ll~~~d~~~~~~~~- 241 (271)
T PF09822_consen 166 SQSTSYSSLKSLLEKN-YDVEELNLANEEI-PDDADVLVIAGPKTDLSEEELYALDQYL-MNGGKLLILLDPFSVELQG- 241 (271)
T ss_pred cCcchHHHHHHHHHhc-CceeecCCccccc-CCCCCEEEEECCCCCCCHHHHHHHHHHH-HcCCeEEEEECCccccccc-
Confidence 3456788999999999 9998854432333 5889999999999999999999999999 5788999999999665321
Q ss_pred eecccCCCCccccccCCCCCchhhhhhcccccceecCeEE
Q 040133 706 MRFFDDNTRSWWTPVTGGANIPALNDLLAPFGIAFGDKIL 745 (1013)
Q Consensus 706 ~~f~d~~~~~~w~p~~gg~n~paln~ll~~~~~~~~~~~~ 745 (1013)
-| .+++..-+-||+||+.|||.+.+.+.
T Consensus 242 ----------~~--~~~~~~~~~L~~lL~~~Gi~~~~~~V 269 (271)
T PF09822_consen 242 ----------LW--AGGAQRDSNLNDLLEEYGIRINPGLV 269 (271)
T ss_pred ----------cc--ccccccccCHHHHHHHcCCEeCCCEe
Confidence 11 11111268999999999999988753
No 47
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=97.26 E-value=0.0003 Score=63.12 Aligned_cols=78 Identities=22% Similarity=0.151 Sum_probs=43.4
Q ss_pred cEEEEeCCCCChHHHHHHHHhhcCCCCCchhh---ccCCCccccceeeeEEecccccHHHHHHHHcCCCceEEEeCceee
Q 040133 51 NYIVRFREYKTAEDHCSYLKSRITPDGWKWIE---RKNPASKYPTDFGLISVEESAKQGLIEEIERLNLVKDVSVDSSYK 127 (1013)
Q Consensus 51 ~yIV~fk~~~~~~~~~~~l~~~~~~~~~~~v~---r~~~~~~~~~~f~v~~v~~~~~~~~i~~L~~~P~V~~Vepd~~~~ 127 (1013)
+|||.|++....+...+.+.+......-+... ..+....+.+...+.++.+..+++.+++|+++|+|++||||..++
T Consensus 1 ~YIV~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~ 80 (82)
T PF05922_consen 1 RYIVVFKDDASAASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVS 80 (82)
T ss_dssp EEEEEE-TTSTHHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEE
T ss_pred CEEEEECCCCCcchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEe
Confidence 69999999877654222222222211000111 111111222222244556677889999999999999999999987
Q ss_pred e
Q 040133 128 R 128 (1013)
Q Consensus 128 ~ 128 (1013)
.
T Consensus 81 l 81 (82)
T PF05922_consen 81 L 81 (82)
T ss_dssp E
T ss_pred c
Confidence 5
No 48
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=96.81 E-value=0.0045 Score=54.51 Aligned_cols=63 Identities=24% Similarity=0.336 Sum_probs=55.5
Q ss_pred HHHHHHHHHHcCeEEEEcCCccccccCCCceeEEEecCCCcCC-HHHHHHHHHHHhhCCCcEEEEe
Q 040133 631 FHIMFNMLRDAGYYVETLGSPFTCFDAHQYGTLMLVDLEDEYF-EEEIEKLSYDVLNTGLGLAVFS 695 (1013)
Q Consensus 631 ~~~~~~~l~~~g~~~e~l~~~~tcf~~~~y~~l~~vd~e~~~~-~~e~~~l~~~v~~~~l~~~v~~ 695 (1013)
.+.+|+.|++.|+-|+....|+.-.+ ..-+|||+++|...+. ++|++.|.+-|+ +|-.|||.|
T Consensus 7 ~~a~~~~L~~~g~~v~~~~~~~~~l~-~~~~tll~i~~~~~~~~~~~~~~l~~~v~-~G~~lvl~a 70 (70)
T PF14258_consen 7 TYALYQLLEEQGVKVERWRKPYEALE-ADDGTLLVIGPDLRLSEPEEAEALLEWVE-AGNTLVLAA 70 (70)
T ss_pred HHHHHHHHHHCCCeeEEecccHHHhC-CCCCEEEEEeCCCCCCchHHHHHHHHHHH-cCCEEEEeC
Confidence 57899999999999999999988554 5899999999999999 599999999995 798888764
No 49
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.59 E-value=0.11 Score=63.66 Aligned_cols=101 Identities=16% Similarity=0.227 Sum_probs=71.5
Q ss_pred HHHHHHHHHHcCeEEEEcCCc-------cccccCCCceeEEEecCCCcCCHHHHHHHHHHHhhCCCcEEEEeeecccccc
Q 040133 631 FHIMFNMLRDAGYYVETLGSP-------FTCFDAHQYGTLMLVDLEDEYFEEEIEKLSYDVLNTGLGLAVFSEWYNVETM 703 (1013)
Q Consensus 631 ~~~~~~~l~~~g~~~e~l~~~-------~tcf~~~~y~~l~~vd~e~~~~~~e~~~l~~~v~~~~l~~~v~~dwy~~~~~ 703 (1013)
+..+.+.|+ .+|-|+-+.-- -.-=|++++-.|+|+.|.+.|.++|+.+|...+ .+|-.+++|.|=.+..+-
T Consensus 200 ~~~l~~~L~-~~y~v~~l~l~~~~~~~~~ip~~l~d~d~LvI~~P~~~ls~~e~~~Ldqfl-~~GG~ll~~~dp~~~~~~ 277 (552)
T TIGR03521 200 IADLVSTLK-EYYFIAPFTLDSVAANPAKTLADLKKFDLIVIAKPTEAFSEREKYILDQYI-MNGGKALFLVDAVAMEMD 277 (552)
T ss_pred HHHHHHHHH-hcCceeeecchhcccCcccccccccCcCEEEEeCCCccCCHHHHHHHHHHH-HcCCeEEEEecCcccccc
Confidence 467788888 89988754321 111234689999999999999999999999999 679999999986653221
Q ss_pred ceeecccCCCCccccccCCCC----CchhhhhhcccccceecCeEE
Q 040133 704 VKMRFFDDNTRSWWTPVTGGA----NIPALNDLLAPFGIAFGDKIL 745 (1013)
Q Consensus 704 ~~~~f~d~~~~~~w~p~~gg~----n~paln~ll~~~~~~~~~~~~ 745 (1013)
.. .+..|+. .-+-|++||..|||.+.+.+.
T Consensus 278 -~~-----------~~~~g~~~~~~~~~~L~~Ll~~~Gi~~~~~~V 311 (552)
T TIGR03521 278 -SL-----------YNGDGATFALPRDLNLDDLLFKYGIRINPDLV 311 (552)
T ss_pred -cc-----------cccCCccccCCCCCCHHHHHHHhCeEeCcCeE
Confidence 00 0111111 125799999999999985543
No 50
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=88.10 E-value=3.5 Score=38.61 Aligned_cols=98 Identities=13% Similarity=0.192 Sum_probs=67.5
Q ss_pred CCcccCCcccccCCCCCCCCcc--cccccCCCccEEEEEEeecCCCCCeeEEEEEcceeeeecccEEEEEEEEcCCCccc
Q 040133 470 PRASIFPSVLDYTDCPYSWPFC--RQPLYAGAMPVIFNVTILNGWEGNLLNIRFTYSEVIWPWTGYLALHMQIKEEGAKF 547 (1013)
Q Consensus 470 p~~~~~p~~l~~~~~~~~~p~~--~~~~~~g~~pvt~n~ti~n~~~g~~~~v~~s~s~v~~p~~G~~~v~vtv~~~~~~f 547 (1013)
|...+.|..++|+.+...-.++ -+..+.+..|..+++..... ... .+++++..-.++++....+.|+..+...
T Consensus 2 P~l~v~P~~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~-~~~--~~~v~~~~g~l~PG~~~~~~V~~~~~~~-- 76 (102)
T PF14874_consen 2 PTLEVSPKELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPES-LSS--FFSVEPPSGFLAPGESVELEVTFSPTKP-- 76 (102)
T ss_pred CEEEEeCCEEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCc-CCC--CEEEECCCCEECCCCEEEEEEEEEeCCC--
Confidence 4566788999999877655554 33457888899888875431 223 3455666667889999999998885432
Q ss_pred eeeEEeEEEEEEEcCCCCCCCCCcceeEEEEEEEEE
Q 040133 548 SGEIEGNVSVSVHSPPARGEKSSRRCTCMLQLKLKV 583 (1013)
Q Consensus 548 ~g~~~G~v~~tv~s~~~~~~~~~~~~~~~~~v~v~v 583 (1013)
.|.+++.+.++.+ .+.+.|+|++++
T Consensus 77 ~g~~~~~l~i~~e-----------~~~~~i~v~a~~ 101 (102)
T PF14874_consen 77 LGDYEGSLVITTE-----------GGSFEIPVKAEV 101 (102)
T ss_pred CceEEEEEEEEEC-----------CeEEEEEEEEEE
Confidence 2667788777654 245888888875
No 51
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=84.93 E-value=1.3 Score=42.56 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=40.9
Q ss_pred ccccCCCccEEEEEEeecCC-------CCCe--------e-EEEEEcceeeeecccEEEEEEEEcCCC-cc--ceeeEEe
Q 040133 493 QPLYAGAMPVIFNVTILNGW-------EGNL--------L-NIRFTYSEVIWPWTGYLALHMQIKEEG-AK--FSGEIEG 553 (1013)
Q Consensus 493 ~~~~~g~~pvt~n~ti~n~~-------~g~~--------~-~v~~s~s~v~~p~~G~~~v~vtv~~~~-~~--f~g~~~G 553 (1013)
...+.|..+++++++..... .+.. . .+.++...+++|++++..|+|+++++. .. -...++|
T Consensus 15 tl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p~~~~~~~~~~~eG 94 (112)
T PF06280_consen 15 TLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPPSGLDASNGPFYEG 94 (112)
T ss_dssp EEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--GGGHHTT-EEEEE
T ss_pred EEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEehhcCCcccCCEEEE
Confidence 44567888888887766211 1111 0 567777899999999999999998854 22 1478999
Q ss_pred EEEEEEE
Q 040133 554 NVSVSVH 560 (1013)
Q Consensus 554 ~v~~tv~ 560 (1013)
+|.|+-.
T Consensus 95 ~I~~~~~ 101 (112)
T PF06280_consen 95 FITFKSS 101 (112)
T ss_dssp EEEEESS
T ss_pred EEEEEcC
Confidence 9988754
No 52
>KOG3861 consensus Sensory cilia assembly protein [Extracellular structures]
Probab=82.62 E-value=3.5 Score=46.45 Aligned_cols=91 Identities=25% Similarity=0.384 Sum_probs=74.4
Q ss_pred CcHHHHHHHHHHcCeEEEEcCCccccccCCCceeEEEecCCCcCCHHHHHHHHHHHhhCCCcEEEEeeeccccccceeec
Q 040133 629 TNFHIMFNMLRDAGYYVETLGSPFTCFDAHQYGTLMLVDLEDEYFEEEIEKLSYDVLNTGLGLAVFSEWYNVETMVKMRF 708 (1013)
Q Consensus 629 tn~~~~~~~l~~~g~~~e~l~~~~tcf~~~~y~~l~~vd~e~~~~~~e~~~l~~~v~~~~l~~~v~~dwy~~~~~~~~~f 708 (1013)
.-||-|..+||. .+-||++..|++-=.+..--.+++--|.+-|-..|++.|++.|+. |-+|+|..-
T Consensus 23 sGfr~m~rkLks-nw~ve~n~~ei~~e~L~~Vk~~i~agP~~~Ft~~Efevlkkyve~-GGsl~vllG------------ 88 (438)
T KOG3861|consen 23 SGFRMMHRKLKS-NWNVEQNDAEIRMERLARVKIFILAGPQDRFTEDEFEVLKKYVEV-GGSLVVLLG------------ 88 (438)
T ss_pred hhHHHHHHHHhh-ccceeeccchhhhhhhcceeEEEecCcccccchhHHHHHHHHHhc-CCeEEEEec------------
Confidence 358999999985 489999999999998888999999999999999999999999966 888888632
Q ss_pred ccCCCCccccccCCCCCc--hhhhhhccccccee-cCeEE
Q 040133 709 FDDNTRSWWTPVTGGANI--PALNDLLAPFGIAF-GDKIL 745 (1013)
Q Consensus 709 ~d~~~~~~w~p~~gg~n~--paln~ll~~~~~~~-~~~~~ 745 (1013)
.||--- ..+|.+|..|||.. ||.|.
T Consensus 89 ------------EGGE~rf~tnvNf~le~YGI~vN~DtVv 116 (438)
T KOG3861|consen 89 ------------EGGEPRFNTNVNFFLEQYGIYVNGDTVV 116 (438)
T ss_pred ------------CCCCccccccHHHHHHHhCeEecCCcee
Confidence 233322 56899999999974 44443
No 53
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=80.47 E-value=0.94 Score=44.64 Aligned_cols=31 Identities=10% Similarity=0.378 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHhh--hhhhhhhhhhccccCC
Q 040133 975 LIPAVVAVTGVLVFL--SFWRIRQKRRRRRKGS 1005 (1013)
Q Consensus 975 ~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 1005 (1013)
+=|+|+++.+|+++. .+|+.++||+++||+.
T Consensus 83 ~G~vlLs~GLmlL~~~alcW~~~~rkK~~kr~e 115 (129)
T PF15099_consen 83 FGPVLLSLGLMLLACSALCWKPIIRKKKKKRRE 115 (129)
T ss_pred ehHHHHHHHHHHHHhhhheehhhhHhHHHHhhh
Confidence 347888888876664 4899999988755554
No 54
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=78.79 E-value=4.1 Score=43.50 Aligned_cols=60 Identities=27% Similarity=0.252 Sum_probs=35.5
Q ss_pred cHHHHHHHHHHcCeEEEEcCCccccccCCCceeEEEecCCCcCCHHHHHHHHHHHhhCCCcEEEE
Q 040133 630 NFHIMFNMLRDAGYYVETLGSPFTCFDAHQYGTLMLVDLEDEYFEEEIEKLSYDVLNTGLGLAVF 694 (1013)
Q Consensus 630 n~~~~~~~l~~~g~~~e~l~~~~tcf~~~~y~~l~~vd~e~~~~~~e~~~l~~~v~~~~l~~~v~ 694 (1013)
+++.+|..|+++|+-++++... . |++.|-.|++-.. .-..+++.++|++.|+. |-.||+-
T Consensus 31 ~~~~~y~al~~~gi~vDvv~~~-~--dL~~Ykllv~P~~-~~l~~~~~~~L~~yV~~-GG~li~~ 90 (207)
T PF08532_consen 31 QVRGWYRALRELGIPVDVVSPD-D--DLSGYKLLVLPSL-YILSPEFAERLRAYVEN-GGTLILT 90 (207)
T ss_dssp HHHHHHHHHHTTT--EEEE-TT-S----TT-SEEEES---SC--HHH---HHHHHT--SS-EEE-
T ss_pred HHHHHHHHHHHcCCceEEecCc-C--CcccCcEEEEeeE-EEEChHHHHHHHHHHHC-CCEEEEE
Confidence 4688999999999999999877 3 9999996665444 45778888999999954 6666653
No 55
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=72.49 E-value=3.4 Score=38.28 Aligned_cols=30 Identities=17% Similarity=0.322 Sum_probs=24.3
Q ss_pred chhHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 040133 973 HWLIPAVVAVTGVLVFLSFWRIRQKRRRRR 1002 (1013)
Q Consensus 973 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1002 (1013)
.|++=|++|+..+++.+.||..|.|.||+=
T Consensus 36 ~~lvI~~iFil~VilwfvCC~kRkrsRrPI 65 (94)
T PF05393_consen 36 WFLVICGIFILLVILWFVCCKKRKRSRRPI 65 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCCc
Confidence 489999999999888888888877777653
No 56
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=71.88 E-value=1.4 Score=53.08 Aligned_cols=68 Identities=13% Similarity=0.043 Sum_probs=51.4
Q ss_pred cCcceEEEEec----------CccccCCCCCC------CcH---HHHHHHHHHHhcCCCCCccccCCCCCCCCCCCCCCC
Q 040133 808 VGEGRIAVYGD----------SNCLDSSHMVT------NCY---WLLRKILDFTSANIRDSVLFSDSSKHDTPLVEDDNQ 868 (1013)
Q Consensus 808 ~~~g~~~~~gd----------s~cld~~~~~~------~c~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1013)
+..|++.|++| |+||+..|.+. .|+ ||.-..|+++..+.-...|..+.++..++.....-+
T Consensus 882 p~~g~~~v~p~r~~~~~~~~yS~vl~~~l~~~~~r~~~ac~~~~wl~~~~ln~~~ps~H~~~L~~~Ln~~ve~~~~~r~~ 961 (1033)
T KOG4266|consen 882 PVIGDEKVLPSRRTDVNFSTYSSVLGKELICESDRFEVACTKGYWLHVRGLNRRLPSYHGIDLGRGLNFTVESKRPTRWR 961 (1033)
T ss_pred CCcccccccccccccccchhhhhhhhhhhcCCCcCcccccccccccceecccccCcchhhhhhhcCccceeccccccccc
Confidence 46799999999 99999988776 798 999999999998854445556777777666555455
Q ss_pred CCcccCC
Q 040133 869 LPSRRTD 875 (1013)
Q Consensus 869 ~p~r~~~ 875 (1013)
+|+|...
T Consensus 962 ~~~~~~~ 968 (1033)
T KOG4266|consen 962 SAKEGGE 968 (1033)
T ss_pred ccccCCc
Confidence 5555443
No 57
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=71.49 E-value=1.7 Score=34.79 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=19.0
Q ss_pred chhHHHHHHHHHHHHhhhhhhhhhh
Q 040133 973 HWLIPAVVAVTGVLVFLSFWRIRQK 997 (1013)
Q Consensus 973 ~~~~p~~~~~~~~~~~~~~~~~~~~ 997 (1013)
.=.||+++.+..++++|++|+.|+|
T Consensus 16 ~VvVPV~vI~~vl~~~l~~~~rR~k 40 (40)
T PF08693_consen 16 GVVVPVGVIIIVLGAFLFFWYRRKK 40 (40)
T ss_pred EEEechHHHHHHHHHHhheEEeccC
Confidence 3368999888887788888876654
No 58
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=66.35 E-value=4.1 Score=51.74 Aligned_cols=24 Identities=38% Similarity=0.725 Sum_probs=22.2
Q ss_pred CCCCCCcEEEEEcCCCCCCCCCcc
Q 040133 192 GYTGAKVKMAIFDTGIRENHPHFR 215 (1013)
Q Consensus 192 g~tG~GV~VaVIDTGId~~Hpdl~ 215 (1013)
.|+|+||+|||+|||+|..-|.+.
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 589999999999999999988886
No 59
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=66.06 E-value=16 Score=39.61 Aligned_cols=58 Identities=28% Similarity=0.405 Sum_probs=44.8
Q ss_pred HHHHHcCeEEE--EcCCccccc---cCCCceeEEEe-cCC-CcCCHHHHHHHHHHHhhCCCcEEEE
Q 040133 636 NMLRDAGYYVE--TLGSPFTCF---DAHQYGTLMLV-DLE-DEYFEEEIEKLSYDVLNTGLGLAVF 694 (1013)
Q Consensus 636 ~~l~~~g~~~e--~l~~~~tcf---~~~~y~~l~~v-d~e-~~~~~~e~~~l~~~v~~~~l~~~v~ 694 (1013)
..|++.||-|+ .|-.|-.-| ++++|-+|++. +.- +++.++..++|++.| ++|.+||+.
T Consensus 30 ~~L~~~gf~V~~~~~~d~~~~~~~~~L~~~D~lV~~~~~~~~~l~~eq~~~l~~~V-~~GgGlv~l 94 (215)
T cd03142 30 AALAEYGFDVQTATLDEPEHGLTEEVLAETDVLLWWGHIAHDEVKDEIVERVHRRV-LDGMGLIVL 94 (215)
T ss_pred HHHHhcCcEEEEEeccCccccCCHhHHhcCCEEEEeCCCCcCcCCHHHHHHHHHHH-HcCCCEEEE
Confidence 46789999888 466662223 46789988873 555 899999999999999 569999885
No 60
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=62.73 E-value=24 Score=35.57 Aligned_cols=55 Identities=24% Similarity=0.237 Sum_probs=45.7
Q ss_pred cHHHHHHHHHHcCeEEEEcCCccccccCCCceeEEEecCCCcCCHHHHHHHHHHHhhCC
Q 040133 630 NFHIMFNMLRDAGYYVETLGSPFTCFDAHQYGTLMLVDLEDEYFEEEIEKLSYDVLNTG 688 (1013)
Q Consensus 630 n~~~~~~~l~~~g~~~e~l~~~~tcf~~~~y~~l~~vd~e~~~~~~e~~~l~~~v~~~~ 688 (1013)
-++..|..|++.|+-++++... -|+++|-.|++=+..- ..+++.++|++.|++-|
T Consensus 27 ~~~~~~~~l~~~gi~~d~v~~~---~~l~~y~~vi~P~~~~-~~~~~~~~l~~~v~~GG 81 (154)
T cd03143 27 LALALYRALRELGIPVDVVPPD---ADLSGYKLVVLPDLYL-LSDATAAALRAYVENGG 81 (154)
T ss_pred HHHHHHHHHHHCCCCEEEECCC---CCcccCCEEEECchhc-CCHHHHHHHHHHHHCCC
Confidence 4788999999999999998732 3667899988877754 67899999999997766
No 61
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=55.31 E-value=12 Score=36.38 Aligned_cols=31 Identities=26% Similarity=0.659 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHh---hhhhhhhhhhhccccC
Q 040133 974 WLIPAVVAVTGVLVF---LSFWRIRQKRRRRRKG 1004 (1013)
Q Consensus 974 ~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 1004 (1013)
|++|.++++.+++.+ ++.||+.||+++..+.
T Consensus 1 w~Ll~il~llLll~l~asl~~wr~~~rq~k~~~~ 34 (107)
T PF15330_consen 1 WLLLGILALLLLLSLAASLLAWRMKQRQKKAGQY 34 (107)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Confidence 888866666554332 7778888776655544
No 62
>PF15102 TMEM154: TMEM154 protein family
Probab=52.62 E-value=8.2 Score=39.33 Aligned_cols=14 Identities=43% Similarity=0.501 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHh
Q 040133 975 LIPAVVAVTGVLVF 988 (1013)
Q Consensus 975 ~~p~~~~~~~~~~~ 988 (1013)
+||..|++.+++++
T Consensus 62 lIP~VLLvlLLl~v 75 (146)
T PF15102_consen 62 LIPLVLLVLLLLSV 75 (146)
T ss_pred eHHHHHHHHHHHHH
Confidence 78954444443333
No 63
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=47.69 E-value=42 Score=33.20 Aligned_cols=64 Identities=20% Similarity=0.210 Sum_probs=46.1
Q ss_pred ccCCCccEEEEEEeecCCCCC---------------eeEEEEE-----cceeeeecccEEEEEEEEcCCCccceeeEEeE
Q 040133 495 LYAGAMPVIFNVTILNGWEGN---------------LLNIRFT-----YSEVIWPWTGYLALHMQIKEEGAKFSGEIEGN 554 (1013)
Q Consensus 495 ~~~g~~pvt~n~ti~n~~~g~---------------~~~v~~s-----~s~v~~p~~G~~~v~vtv~~~~~~f~g~~~G~ 554 (1013)
.+.++.++++++++.++.... .+.+.++ ...|++|++.+..|+++++-+...|+|++-|-
T Consensus 36 ~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~~~~sk~V~~~i~~P~~~f~G~ilGG 115 (121)
T PF06030_consen 36 TNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLPPNESKTVTFTIKMPKKAFDGIILGG 115 (121)
T ss_pred EeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEECCCCEEEEEEEEEcCCCCcCCEEEee
Confidence 367888899988877665111 1111110 12389999999999999999889999999999
Q ss_pred EEEE
Q 040133 555 VSVS 558 (1013)
Q Consensus 555 v~~t 558 (1013)
+.++
T Consensus 116 i~~~ 119 (121)
T PF06030_consen 116 IYFS 119 (121)
T ss_pred EEEE
Confidence 8875
No 64
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=38.12 E-value=42 Score=31.89 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=34.0
Q ss_pred CCceeEEEecCC--CcCCHHHHHHHHHHHhhCCCcEEEEeeec
Q 040133 658 HQYGTLMLVDLE--DEYFEEEIEKLSYDVLNTGLGLAVFSEWY 698 (1013)
Q Consensus 658 ~~y~~l~~vd~e--~~~~~~e~~~l~~~v~~~~l~~~v~~dwy 698 (1013)
++|-+++|++|+ ||=..+.++++++-+.++|-.++-+-+|=
T Consensus 6 r~YE~~~Il~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG 48 (97)
T CHL00123 6 NKYETMYLLKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRG 48 (97)
T ss_pred cceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeec
Confidence 689999999998 44455667788888999999998888884
No 65
>PF01974 tRNA_int_endo: tRNA intron endonuclease, catalytic C-terminal domain; InterPro: IPR006677 This entry represents a 3-layer alpha/beta/alpha domain found as the catalytic domain at the C-terminal in homotetrameric tRNA-intron endonucleases [], and as domains 2 and 4 (C-terminal) in the homodimeric enzymes []. tRNA-intron endonucleases (3.1.27.9 from EC) remove tRNA introns by cleaving pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-hydroxyl termini []. These enzymes recognise a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp []. Although homotetrameric enzymes contain four active sites, only two participate in the cleavage, and should therefore, be considered as a dimer of dimers.; GO: 0000213 tRNA-intron endonuclease activity, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 3IEY_B 3IF0_X 2CV8_A 3P1Z_B 3AJV_B 2GJW_D 1R0V_A 3P1Y_C 1R11_B 1RLV_A ....
Probab=31.45 E-value=2e+02 Score=26.31 Aligned_cols=61 Identities=20% Similarity=0.300 Sum_probs=39.9
Q ss_pred HHHHHHHHHcCeEEEE-c--CCccccc--cC----CCceeEEEecCCCcCCHHHHHHHHHHHhhCCCcEEE
Q 040133 632 HIMFNMLRDAGYYVET-L--GSPFTCF--DA----HQYGTLMLVDLEDEYFEEEIEKLSYDVLNTGLGLAV 693 (1013)
Q Consensus 632 ~~~~~~l~~~g~~~e~-l--~~~~tcf--~~----~~y~~l~~vd~e~~~~~~e~~~l~~~v~~~~l~~~v 693 (1013)
-..|.+||+.||+|-- + |..|.=+ |+ +.|..+ +++..+++...|+..+-+-...-.-.+|+
T Consensus 5 y~vY~dLr~rG~~v~~G~kfG~df~vY~~~p~~~Hs~~~V~-v~~~~~~~~~~~l~~~~Rla~~v~K~~il 74 (85)
T PF01974_consen 5 YAVYRDLRSRGYVVKPGIKFGCDFLVYPGDPGRYHSSYLVH-VLSEDDPISWSDLIALVRLATSVKKELIL 74 (85)
T ss_dssp HHHHHHHHHTT-EEEEEGGGTSSEEEETSCTTSSSSSEEEE-EEETTSEEEHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHHHHHCCCEECccCcCCceEEEEeCCCCCcCceEEEE-EEcCCCccCHHHHHHHHHHHhhcCcEEEE
Confidence 3579999999999976 2 5555544 22 455544 35677889899988877655554544443
No 66
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=31.27 E-value=66 Score=37.16 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=41.3
Q ss_pred CeEEEEcCCc---cccccCCCceeEEEecCCCcCCHHHH-HHHHHHHhh-CCCcEEEEeeec
Q 040133 642 GYYVETLGSP---FTCFDAHQYGTLMLVDLEDEYFEEEI-EKLSYDVLN-TGLGLAVFSEWY 698 (1013)
Q Consensus 642 g~~~e~l~~~---~tcf~~~~y~~l~~vd~e~~~~~~e~-~~l~~~v~~-~~l~~~v~~dwy 698 (1013)
=|+||+.|.. ++-.=+..=|+=+++=||++|-.+++ ++|++-... ++-.+||++|=.
T Consensus 164 ~~ivEvMGR~~G~LAl~~ala~~a~~iliPE~~~~~~~l~~~v~~~~~~g~~~~vvvvsEG~ 225 (324)
T TIGR02483 164 VMVVEVMGRHAGWIALHSGIAGGADVILIPEIPFDIDSVCEKVRERFARGKRFAIVVVAEGA 225 (324)
T ss_pred EEEEEEcCCChhHHHHHHHhccCCCEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEEecCc
Confidence 4899999976 22222233377788999999998877 556665555 778899999875
No 67
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=27.95 E-value=60 Score=34.32 Aligned_cols=71 Identities=20% Similarity=0.254 Sum_probs=49.3
Q ss_pred CCcHHHHHHHHHHcCeEEEEc-------CCcccc---ccCCCceeEEEecCCCcC------CHHHHHHHHHHHhhCCCcE
Q 040133 628 HTNFHIMFNMLRDAGYYVETL-------GSPFTC---FDAHQYGTLMLVDLEDEY------FEEEIEKLSYDVLNTGLGL 691 (1013)
Q Consensus 628 ~tn~~~~~~~l~~~g~~~e~l-------~~~~tc---f~~~~y~~l~~vd~e~~~------~~~e~~~l~~~v~~~~l~~ 691 (1013)
+.+...+-..|.+.++-+..+ .-|.+- ..+..|.+++|-|-+-.. .+..++.|++.|++ |-+|
T Consensus 26 d~~v~~l~~~l~~~~~~~~~~p~~~~~~~fP~~~lf~~~L~~yD~vIl~dv~~~~ll~~~~~~~~~~~l~~yV~~-GGgL 104 (177)
T PF07090_consen 26 DPGVDLLHFALLRPGIEVDYIPAHEALIAFPTTLLFDEELNRYDVVILSDVPANSLLKSRRSPNQLELLADYVRD-GGGL 104 (177)
T ss_dssp EESSHHHHHHHHHTT-EEEEEEHHHHHHH--SSC--SHHHCT-SEEEEES--HHHHHT----HHHHHHHHHHHHT-T-EE
T ss_pred CCChHHHHHHHhcCCccccccccchhhhhCCCchhhhhHHhcCCEEEEeCCCchhcccccCCHHHHHHHHHHHHh-CCEE
Confidence 455666778888888887765 345666 678999999999976554 48999999999976 9999
Q ss_pred EEEeeecc
Q 040133 692 AVFSEWYN 699 (1013)
Q Consensus 692 ~v~~dwy~ 699 (1013)
++++-+.+
T Consensus 105 lmigG~~s 112 (177)
T PF07090_consen 105 LMIGGPRS 112 (177)
T ss_dssp EEE-STTS
T ss_pred EEEeChhh
Confidence 99887644
No 68
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=26.30 E-value=30 Score=36.53 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHhhhhhhhhh
Q 040133 975 LIPAVVAVTGVLVFLSFWRIRQ 996 (1013)
Q Consensus 975 ~~p~~~~~~~~~~~~~~~~~~~ 996 (1013)
.+|+++++.+++|+++|++.|+
T Consensus 163 ~lPvvv~~~~~~~~~~~~~~R~ 184 (189)
T PF14610_consen 163 ALPVVVVVLALIMYGFFFWNRK 184 (189)
T ss_pred EccHHHHHHHHHHHhhheeecc
Confidence 6887776666666666666443
No 69
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=26.16 E-value=49 Score=32.11 Aligned_cols=13 Identities=31% Similarity=0.514 Sum_probs=5.7
Q ss_pred Hhhhhhhhhhhhh
Q 040133 987 VFLSFWRIRQKRR 999 (1013)
Q Consensus 987 ~~~~~~~~~~~~~ 999 (1013)
++|+.+|-++||+
T Consensus 31 ~yf~~~RpqkK~~ 43 (106)
T PRK05585 31 FYFLIIRPQQKRQ 43 (106)
T ss_pred HHHHhccHHHHHH
Confidence 3344445444444
No 70
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=25.32 E-value=56 Score=31.32 Aligned_cols=30 Identities=20% Similarity=0.182 Sum_probs=15.9
Q ss_pred chhHHHHHHHHHHHHhhh-hhhhhhhhhccc
Q 040133 973 HWLIPAVVAVTGVLVFLS-FWRIRQKRRRRR 1002 (1013)
Q Consensus 973 ~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~ 1002 (1013)
.++.+++.++..+++++| .+|-||||...+
T Consensus 7 ~~~~~ll~~vl~~~ifyFli~RPQrKr~K~~ 37 (97)
T COG1862 7 SGLVLLLPLVLIFAIFYFLIIRPQRKRMKEH 37 (97)
T ss_pred ccHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 456665555555444444 566666555333
No 71
>PRK03094 hypothetical protein; Provisional
Probab=25.05 E-value=1e+02 Score=28.57 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=24.8
Q ss_pred CcHHHHHHHHHHcCeEEEEcCCccccccCCCceeEEEe
Q 040133 629 TNFHIMFNMLRDAGYYVETLGSPFTCFDAHQYGTLMLV 666 (1013)
Q Consensus 629 tn~~~~~~~l~~~g~~~e~l~~~~tcf~~~~y~~l~~v 666 (1013)
.+.-++-++|++.||-|+-|.++ .|+..+.+.++=
T Consensus 8 ~~Ls~i~~~L~~~GYeVv~l~~~---~~~~~~Da~Vit 42 (80)
T PRK03094 8 QSLTDVQQALKQKGYEVVQLRSE---QDAQGCDCCVVT 42 (80)
T ss_pred cCcHHHHHHHHHCCCEEEecCcc---cccCCcCEEEEe
Confidence 35567889999999999999753 445555555443
No 72
>PF11377 DUF3180: Protein of unknown function (DUF3180); InterPro: IPR021517 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=23.34 E-value=99 Score=31.34 Aligned_cols=36 Identities=11% Similarity=0.237 Sum_probs=24.1
Q ss_pred cccchhHHHHHHHHHHHHhhhhhhhhhhhhccccCC
Q 040133 970 VASHWLIPAVVAVTGVLVFLSFWRIRQKRRRRRKGS 1005 (1013)
Q Consensus 970 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1005 (1013)
..-.|+.++.+.+.+++.++.=|++|++++++++++
T Consensus 27 p~~p~~~~~~l~~la~~~~~~a~~vr~~~~~~~~~~ 62 (138)
T PF11377_consen 27 PPIPWTAGVTLLVLAAVELWLAWQVRRRIEIGPGRR 62 (138)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 345688887766666677777788888884333333
No 73
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=23.09 E-value=77 Score=36.26 Aligned_cols=57 Identities=14% Similarity=0.259 Sum_probs=40.3
Q ss_pred CeEEEEcCCc---cccccCCCceeEEEecCCCcCCHHHH-HHHHHHHhh-CCCcEEEEeeec
Q 040133 642 GYYVETLGSP---FTCFDAHQYGTLMLVDLEDEYFEEEI-EKLSYDVLN-TGLGLAVFSEWY 698 (1013)
Q Consensus 642 g~~~e~l~~~---~tcf~~~~y~~l~~vd~e~~~~~~e~-~~l~~~v~~-~~l~~~v~~dwy 698 (1013)
=|+||+.|.. ++=.=+-.-|+-+++=||++|..+++ +++++-.+. ++-.+||++|-.
T Consensus 162 v~ivEvMGR~~G~lAl~~~la~gad~iliPE~~~~~~~l~~~i~~r~~~g~~~~iIvvaEG~ 223 (301)
T TIGR02482 162 AFVIEVMGRHAGDLALYSGIATGAEIIIIPEFDYDIDELIQRLKEQHEAGKKHSIIIVAEGN 223 (301)
T ss_pred EEEEEeCCCCHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 4799999975 11111223367788999999998887 556655544 778899999984
No 74
>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]
Probab=22.49 E-value=1.5e+02 Score=30.44 Aligned_cols=64 Identities=20% Similarity=0.338 Sum_probs=42.6
Q ss_pred eEEEecCCCcCCHHHHHHHHHHHhhCCCcEEEEeeecccc-cc--ceeecccCCCC-ccccccCCCCCchhhhhhc
Q 040133 662 TLMLVDLEDEYFEEEIEKLSYDVLNTGLGLAVFSEWYNVE-TM--VKMRFFDDNTR-SWWTPVTGGANIPALNDLL 733 (1013)
Q Consensus 662 ~l~~vd~e~~~~~~e~~~l~~~v~~~~l~~~v~~dwy~~~-~~--~~~~f~d~~~~-~~w~p~~gg~n~paln~ll 733 (1013)
-++-+||.+|+| ++|.++.+ .+++..-++ ... .+ -+++|||.+++ .-|+|.+|-.=|=+|+.-+
T Consensus 12 ~~~Rld~G~d~~-~~l~~~a~---~~~i~aa~v----~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i 79 (141)
T COG1661 12 IALRLDPGEDLF-SELEAFAE---QEDIHAAVV----TAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNI 79 (141)
T ss_pred EEEEeCCCccHH-HHHHHHHH---hcCceEEEE----EEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEeccee
Confidence 467899999998 66666655 666655332 222 22 28999998775 4578888876666665544
No 75
>PF12487 DUF3703: Protein of unknown function (DUF3703) ; InterPro: IPR022172 This family of proteins is found in bacteria. Proteins in this family are typically between 113 and 135 amino acids in length.
Probab=22.14 E-value=39 Score=33.13 Aligned_cols=13 Identities=46% Similarity=0.808 Sum_probs=10.3
Q ss_pred ccc--cCCCCCchhh
Q 040133 717 WTP--VTGGANIPAL 729 (1013)
Q Consensus 717 w~p--~~gg~n~pal 729 (1013)
|.| +|||+||+++
T Consensus 84 ~~P~GNtG~anV~~f 98 (112)
T PF12487_consen 84 RVPVGNTGGANVSPF 98 (112)
T ss_pred cCCCCCCCCCCCCCC
Confidence 667 7899998875
No 76
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=22.09 E-value=1e+02 Score=27.74 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=18.7
Q ss_pred CCceeEEEecCCCcCCHHHHHHHHHHHhhCCCcEEE
Q 040133 658 HQYGTLMLVDLEDEYFEEEIEKLSYDVLNTGLGLAV 693 (1013)
Q Consensus 658 ~~y~~l~~vd~e~~~~~~e~~~l~~~v~~~~l~~~v 693 (1013)
.+| .+++||+++ +..+||++|+. +|.-|||
T Consensus 25 ~~~-~v~~iD~~~-~~~~~I~~L~~----~G~~vic 54 (74)
T PF03537_consen 25 PDV-DVVVIDLFD-FSKEEIARLKA----QGKKVIC 54 (74)
T ss_dssp SS--SEEEE-SBS---HHHHHHHHH----TT-EEEE
T ss_pred CCC-CEEEECCcc-CCHHHHHHHHH----CCCEEEE
Confidence 344 467899996 88999999876 3766665
No 77
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=21.85 E-value=46 Score=33.40 Aligned_cols=105 Identities=17% Similarity=0.332 Sum_probs=59.5
Q ss_pred EEEEEEecCCCCCCcceeeeeeecCCCCCCCcCCCCCCCCCccccCCCCCCCcH-----HHHHHHHHHcCeEEEEcCCcc
Q 040133 578 QLKLKVVPTPPRSKRVLWDQFHSIKYPPGYIPRDSLDVRSDILDWHGDHLHTNF-----HIMFNMLRDAGYYVETLGSPF 652 (1013)
Q Consensus 578 ~v~v~v~p~p~r~~r~l~dq~h~~~yp~g~~prd~l~~~~~~~d~~~dh~~tn~-----~~~~~~l~~~g~~~e~l~~~~ 652 (1013)
.+++-++..|.--|..|+.++-+-.|.+.|.|....+.....+.+++..++.++ ..-|..++. .|+
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~-~~~-------- 73 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITT-AYY-------- 73 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHH-HHh--------
Confidence 366777777777787777777777777777665544332222333332221111 122333332 111
Q ss_pred ccccCCCceeEEEecCCCcCCHHHHHHHHHHHhh---CCCcEEEEe
Q 040133 653 TCFDAHQYGTLMLVDLEDEYFEEEIEKLSYDVLN---TGLGLAVFS 695 (1013)
Q Consensus 653 tcf~~~~y~~l~~vd~e~~~~~~e~~~l~~~v~~---~~l~~~v~~ 695 (1013)
-..-+.++++|..++-.-++++.+...+.. .+..++|++
T Consensus 74 ----~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~ 115 (167)
T cd01867 74 ----RGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVG 115 (167)
T ss_pred ----CCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEE
Confidence 133688999998776555566666655543 467778877
No 78
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=21.28 E-value=3.4e+02 Score=28.99 Aligned_cols=62 Identities=21% Similarity=0.274 Sum_probs=44.3
Q ss_pred HHHHHHHHH--HcCeEEEEcCCccccc---cCCCceeEEEecCC-CcCCHHHHHHHHHHHhhCCCcEEEE
Q 040133 631 FHIMFNMLR--DAGYYVETLGSPFTCF---DAHQYGTLMLVDLE-DEYFEEEIEKLSYDVLNTGLGLAVF 694 (1013)
Q Consensus 631 ~~~~~~~l~--~~g~~~e~l~~~~tcf---~~~~y~~l~~vd~e-~~~~~~e~~~l~~~v~~~~l~~~v~ 694 (1013)
...++..|- ..||=|++.-.+ ..| ++++|-+|++..-- +++.++..+.|++.|+ +|-++|++
T Consensus 20 ~~~~l~~ll~~~~~~~v~~~~~~-~~~~~~~L~~~Dvvv~~~~~~~~l~~~~~~al~~~v~-~Ggglv~l 87 (217)
T PF06283_consen 20 AKKALAQLLEESEGFEVTVTEDP-DDLTPENLKGYDVVVFYNTGGDELTDEQRAALRDYVE-NGGGLVGL 87 (217)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSG-GCTSHHCHCT-SEEEEE-SSCCGS-HHHHHHHHHHHH-TT-EEEEE
T ss_pred HHHHHHHHhccCCCEEEEEEeCc-ccCChhHhcCCCEEEEECCCCCcCCHHHHHHHHHHHH-cCCCEEEE
Confidence 344444444 589999987764 555 56999999888775 4799999999999995 79999987
No 79
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=21.21 E-value=1.5e+02 Score=30.74 Aligned_cols=40 Identities=18% Similarity=0.379 Sum_probs=32.6
Q ss_pred eEEEecCCCcCCHH-------------HHHHHHHHHhhCCCcEEEEeeecccc
Q 040133 662 TLMLVDLEDEYFEE-------------EIEKLSYDVLNTGLGLAVFSEWYNVE 701 (1013)
Q Consensus 662 ~l~~vd~e~~~~~~-------------e~~~l~~~v~~~~l~~~v~~dwy~~~ 701 (1013)
+||+||.-..|..+ .|.+|-+..+.+|+-+|..-+||..+
T Consensus 1 ALlvID~Q~~f~~~~~~~~~~~~~~~~ni~~l~~~ar~~~~~Vi~~~~~~~~~ 53 (179)
T cd01015 1 ALLVIDLVEGYTQPGSYLAPGIAAALENVQRLLAAARAAGVPVIHTTVVYDPD 53 (179)
T ss_pred CEEEEEeecceeCCCCccccchHHHHHHHHHHHHHHHHcCCCEEEEEeeECCc
Confidence 58889988888742 27888888889999999999999765
No 80
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=21.12 E-value=78 Score=33.27 Aligned_cols=32 Identities=25% Similarity=0.462 Sum_probs=27.6
Q ss_pred EEEecCCCcCCHHHHHHHHHHHhhCCCcEEEEe
Q 040133 663 LMLVDLEDEYFEEEIEKLSYDVLNTGLGLAVFS 695 (1013)
Q Consensus 663 l~~vd~e~~~~~~e~~~l~~~v~~~~l~~~v~~ 695 (1013)
.++|| |--||+++|..|-+.+.++|..|+|+|
T Consensus 79 vI~ID-EaQFf~~~i~~l~~~~~~~g~~Vi~~G 110 (176)
T PF00265_consen 79 VIGID-EAQFFDEQIVQLVEILANKGIPVICAG 110 (176)
T ss_dssp EEEES-SGGGSTTTHHHHHHHHHHTT-EEEEEE
T ss_pred EEEEe-chHhhHHHHHHHHHHHHhCCCeEEEEe
Confidence 56677 888898999999999999999999997
No 81
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=20.95 E-value=5.1e+02 Score=31.83 Aligned_cols=102 Identities=19% Similarity=0.153 Sum_probs=60.3
Q ss_pred cCeEEEEc--CCccccccCCCceeEEEecCCC-------cCCHHHHHHHHHHHhhCCCc-EEEEeeeccccccceeeccc
Q 040133 641 AGYYVETL--GSPFTCFDAHQYGTLMLVDLED-------EYFEEEIEKLSYDVLNTGLG-LAVFSEWYNVETMVKMRFFD 710 (1013)
Q Consensus 641 ~g~~~e~l--~~~~tcf~~~~y~~l~~vd~e~-------~~~~~e~~~l~~~v~~~~l~-~~v~~dwy~~~~~~~~~f~d 710 (1013)
.||..|.+ +..|-+||....-.++++|.-. .+-+++++-|++++.+..-. +|||. -+..-.+. ...-|
T Consensus 280 HGy~~~~~~~G~~YYSFd~~ggvrfIvLDSt~~~G~~~G~L~eeQL~WLeqeLa~a~~k~VVVf~-HHPp~s~g-~~~~D 357 (496)
T TIGR03767 280 HGYSEDNLSAGTGYYTFDIAGGVRGISMDTTNRAGGDEGSLGQTQFKWIKDTLRASSDTLFVLFS-HHTSWSMV-NELTD 357 (496)
T ss_pred CCcccccccCCCceEEEEeECCEEEEEEeCCCcCCCcCCccCHHHHHHHHHHHhcCCCCCEEEEE-CCCCcccc-ccccc
Confidence 46776665 6667777843334777887743 36799999999999765433 55554 22211110 00000
Q ss_pred CCCCccccccCCCCCchhhhhhcccc-cceecCeEEeeeEEeC
Q 040133 711 DNTRSWWTPVTGGANIPALNDLLAPF-GIAFGDKILNGDFSLN 752 (1013)
Q Consensus 711 ~~~~~~w~p~~gg~n~paln~ll~~~-~~~~~~~~~~~~~~~~ 752 (1013)
...|...-.|-..|=+||+.| +|.. ++.|+...+
T Consensus 358 -----p~~pg~~~~n~~eLldLL~~ypnV~a---VfsGHvH~n 392 (496)
T TIGR03767 358 -----PVDPGEKRHLGTELVSLLLEHPNVLA---WVNGHTHSN 392 (496)
T ss_pred -----cccccccccCHHHHHHHHhcCCCceE---EEECCcCCC
Confidence 001222234667899999998 6774 788887654
No 82
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=20.80 E-value=2.7e+02 Score=30.76 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=42.7
Q ss_pred CCcHHHHHHHHHHcCe-EEEEcCCccccccCCCceeEEEecCCCcCCHHHHHHHHHHHhhCCCcEEEEe
Q 040133 628 HTNFHIMFNMLRDAGY-YVETLGSPFTCFDAHQYGTLMLVDLEDEYFEEEIEKLSYDVLNTGLGLAVFS 695 (1013)
Q Consensus 628 ~tn~~~~~~~l~~~g~-~~e~l~~~~tcf~~~~y~~l~~vd~e~~~~~~e~~~l~~~v~~~~l~~~v~~ 695 (1013)
...+.+.+..+++.|| +||+-..++.|+.. ...+.+++++.|++.+++.||.+..++
T Consensus 20 ~~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~-----------~~~~~~~~~~~l~~~l~~~gl~i~~~~ 77 (283)
T PRK13209 20 GECWLEKLAIAKTAGFDFVEMSVDESDERLA-----------RLDWSREQRLALVNALVETGFRVNSMC 77 (283)
T ss_pred CCCHHHHHHHHHHcCCCeEEEecCccccchh-----------ccCCCHHHHHHHHHHHHHcCCceeEEe
Confidence 3468899999999999 99985443333211 123578899999999999999997665
No 83
>smart00002 PLP Myelin proteolipid protein (PLP or lipophilin).
Probab=20.35 E-value=40 Score=29.55 Aligned_cols=10 Identities=70% Similarity=1.325 Sum_probs=9.6
Q ss_pred cccCCCceeE
Q 040133 654 CFDAHQYGTL 663 (1013)
Q Consensus 654 cf~~~~y~~l 663 (1013)
|+|+++||.|
T Consensus 23 C~D~RQyGil 32 (60)
T smart00002 23 CVDARQYGIL 32 (60)
T ss_pred Eeechhccee
Confidence 9999999988
No 84
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=20.33 E-value=87 Score=32.76 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=17.1
Q ss_pred CCCCcccccchhHHHHHHHHHHHHhhhhhhhhhhhhccccCCC
Q 040133 964 LDMPVLVASHWLIPAVVAVTGVLVFLSFWRIRQKRRRRRKGSG 1006 (1013)
Q Consensus 964 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1013)
.|.||+-.+- =+++.+++++++++..|.-+-|||.||.++
T Consensus 89 ~d~~~l~R~~---~Vl~g~s~l~i~yfvir~~R~r~~~rktRk 128 (163)
T PF06679_consen 89 PDSPMLKRAL---YVLVGLSALAILYFVIRTFRLRRRNRKTRK 128 (163)
T ss_pred CCccchhhhH---HHHHHHHHHHHHHHHHHHHhhcccccccee
Confidence 3446554432 234444444444444444333334444333
No 85
>PRK01060 endonuclease IV; Provisional
Probab=20.15 E-value=2.3e+02 Score=31.20 Aligned_cols=54 Identities=15% Similarity=0.176 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCe-EEEE-cCCccccccCCCceeEEEecCCCcCCHHHHHHHHHHHhhCCCc---EEEEeee
Q 040133 631 FHIMFNMLRDAGY-YVET-LGSPFTCFDAHQYGTLMLVDLEDEYFEEEIEKLSYDVLNTGLG---LAVFSEW 697 (1013)
Q Consensus 631 ~~~~~~~l~~~g~-~~e~-l~~~~tcf~~~~y~~l~~vd~e~~~~~~e~~~l~~~v~~~~l~---~~v~~dw 697 (1013)
+.++...+++.|| .||+ ++.|. ++. -.++.++++++|++.+.++||. +.+-+-|
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~-~~~------------~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~~ 72 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQ-QWK------------RKPLEELNIEAFKAACEKYGISPEDILVHAPY 72 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCC-CCc------------CCCCCHHHHHHHHHHHHHcCCCCCceEEecce
Confidence 5778888889999 7888 44453 221 2236889999999999999998 5555544
No 86
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=20.04 E-value=1e+02 Score=26.23 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhh
Q 040133 974 WLIPAVVAVTGVLVFLSFWRIRQ 996 (1013)
Q Consensus 974 ~~~p~~~~~~~~~~~~~~~~~~~ 996 (1013)
.+||+-+++.++.++.++|.+|.
T Consensus 6 ~LIpiSl~l~~~~l~~f~Wavk~ 28 (51)
T TIGR00847 6 ILIPISLLLGGVGLVAFLWSLKS 28 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 48998888888888888898864
Done!