Query 040136
Match_columns 681
No_of_seqs 666 out of 3570
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 05:29:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040136.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040136hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.6E-74 3.5E-79 642.8 63.1 574 84-677 92-674 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 2.7E-72 5.8E-77 625.1 59.9 573 81-678 54-643 (857)
3 PLN03218 maturation of RBCL 1; 100.0 2.4E-69 5.2E-74 587.6 67.0 520 111-661 367-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 1.2E-66 2.6E-71 566.5 65.0 512 84-626 376-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 1.2E-63 2.5E-68 542.6 53.2 473 148-657 86-560 (697)
6 PLN03081 pentatricopeptide (PP 100.0 2.3E-61 5.1E-66 524.5 53.2 507 82-661 91-611 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 6.3E-34 1.4E-38 326.0 72.9 570 89-678 306-889 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.6E-33 5.7E-38 320.8 70.6 551 84-653 335-899 (899)
9 PRK11447 cellulose synthase su 100.0 2.7E-25 5.9E-30 254.1 67.7 554 86-653 70-739 (1157)
10 PRK11447 cellulose synthase su 100.0 1.2E-23 2.6E-28 240.7 64.9 573 87-677 37-728 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 7E-21 1.5E-25 207.7 65.2 543 87-660 53-710 (987)
12 KOG2002 TPR-containing nuclear 99.9 1.2E-21 2.5E-26 199.3 52.0 552 87-654 139-745 (1018)
13 PRK09782 bacteriophage N4 rece 99.9 1.1E-19 2.5E-24 198.3 64.1 526 122-678 52-695 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 1.7E-21 3.6E-26 188.1 40.0 440 154-636 53-501 (966)
15 KOG4626 O-linked N-acetylgluco 99.9 1.5E-20 3.2E-25 181.6 39.2 377 186-601 117-501 (966)
16 TIGR00990 3a0801s09 mitochondr 99.9 8E-19 1.7E-23 188.9 51.8 426 189-654 131-571 (615)
17 KOG2002 TPR-containing nuclear 99.9 2.5E-18 5.5E-23 175.3 51.4 570 96-677 112-733 (1018)
18 PRK11788 tetratricopeptide rep 99.9 2.7E-20 5.8E-25 190.4 33.7 278 358-661 71-354 (389)
19 TIGR00990 3a0801s09 mitochondr 99.9 1.3E-17 2.8E-22 179.5 48.7 426 152-619 130-571 (615)
20 PRK11788 tetratricopeptide rep 99.9 3.1E-19 6.8E-24 182.5 33.7 301 194-556 44-354 (389)
21 PRK15174 Vi polysaccharide exp 99.9 1.1E-17 2.5E-22 179.1 45.0 360 195-619 15-381 (656)
22 PRK15174 Vi polysaccharide exp 99.9 3.9E-17 8.4E-22 175.0 46.7 358 159-549 15-381 (656)
23 PRK10049 pgaA outer membrane p 99.9 2.5E-16 5.4E-21 172.6 52.5 411 148-618 14-455 (765)
24 PRK10049 pgaA outer membrane p 99.8 3.2E-16 7E-21 171.7 51.1 431 182-670 12-470 (765)
25 PRK14574 hmsH outer membrane p 99.8 3.3E-15 7.1E-20 160.3 54.0 445 123-594 43-521 (822)
26 PRK14574 hmsH outer membrane p 99.8 4.6E-15 1E-19 159.1 54.5 440 156-628 41-520 (822)
27 KOG0495 HAT repeat protein [RN 99.8 4.3E-14 9.3E-19 138.4 54.2 551 92-675 265-866 (913)
28 KOG2076 RNA polymerase III tra 99.8 2.8E-14 6E-19 145.3 51.7 558 88-654 149-849 (895)
29 KOG4422 Uncharacterized conser 99.8 1.2E-14 2.6E-19 135.1 41.5 365 182-584 204-590 (625)
30 KOG2076 RNA polymerase III tra 99.8 4.6E-14 9.9E-19 143.8 48.3 541 117-667 142-780 (895)
31 KOG4422 Uncharacterized conser 99.8 4E-14 8.6E-19 131.8 42.9 352 252-656 204-592 (625)
32 KOG1915 Cell cycle control pro 99.8 2.1E-13 4.6E-18 128.6 47.1 476 148-653 72-584 (677)
33 KOG2003 TPR repeat-containing 99.8 6.8E-15 1.5E-19 137.6 36.3 466 191-677 207-711 (840)
34 KOG0495 HAT repeat protein [RN 99.8 2.4E-12 5.2E-17 126.4 54.0 453 161-653 418-879 (913)
35 KOG2003 TPR repeat-containing 99.7 6E-14 1.3E-18 131.4 35.7 483 113-640 200-709 (840)
36 KOG1915 Cell cycle control pro 99.7 1.6E-11 3.4E-16 116.2 47.9 465 116-619 75-585 (677)
37 KOG1155 Anaphase-promoting com 99.6 3.9E-11 8.4E-16 113.5 41.2 386 217-674 161-554 (559)
38 KOG1155 Anaphase-promoting com 99.6 4.5E-11 9.8E-16 113.1 40.6 332 287-654 161-495 (559)
39 KOG2047 mRNA splicing factor [ 99.6 7.5E-10 1.6E-14 109.1 49.4 507 117-640 105-709 (835)
40 KOG4318 Bicoid mRNA stability 99.6 2.8E-11 6.1E-16 123.2 38.0 536 106-671 17-641 (1088)
41 KOG0547 Translocase of outer m 99.6 4.8E-11 1E-15 113.6 36.9 220 402-653 336-565 (606)
42 PF13429 TPR_15: Tetratricopep 99.6 1.2E-14 2.6E-19 140.4 13.0 260 363-653 15-276 (280)
43 PRK10747 putative protoheme IX 99.6 1.5E-11 3.2E-16 124.4 35.2 116 268-387 97-217 (398)
44 KOG2047 mRNA splicing factor [ 99.6 5.6E-09 1.2E-13 103.1 50.8 502 87-606 111-710 (835)
45 PRK10747 putative protoheme IX 99.6 1.5E-11 3.2E-16 124.5 35.0 259 367-653 129-389 (398)
46 KOG1173 Anaphase-promoting com 99.6 7.6E-11 1.7E-15 114.5 37.5 490 91-634 29-531 (611)
47 TIGR00540 hemY_coli hemY prote 99.6 2E-11 4.4E-16 124.2 35.3 132 484-617 262-397 (409)
48 TIGR00540 hemY_coli hemY prote 99.6 3.1E-11 6.8E-16 122.8 35.4 230 398-653 159-398 (409)
49 KOG1126 DNA-binding cell divis 99.6 8.7E-13 1.9E-17 130.5 22.9 163 486-653 456-619 (638)
50 PF13429 TPR_15: Tetratricopep 99.6 3.5E-14 7.6E-19 137.2 12.7 260 261-582 14-275 (280)
51 KOG1173 Anaphase-promoting com 99.6 3.4E-10 7.3E-15 110.1 39.3 510 112-673 14-535 (611)
52 COG2956 Predicted N-acetylgluc 99.5 3.5E-11 7.7E-16 108.6 29.1 221 198-421 48-278 (389)
53 KOG1126 DNA-binding cell divis 99.5 7.2E-12 1.6E-16 124.1 25.5 277 304-619 333-620 (638)
54 KOG4318 Bicoid mRNA stability 99.5 3.8E-10 8.2E-15 115.2 36.1 450 178-654 18-557 (1088)
55 KOG0547 Translocase of outer m 99.5 4.2E-10 9.2E-15 107.3 33.9 209 438-678 337-555 (606)
56 COG2956 Predicted N-acetylgluc 99.5 2E-10 4.3E-15 103.8 29.5 296 303-654 48-347 (389)
57 COG3071 HemY Uncharacterized e 99.5 2E-09 4.3E-14 100.7 36.9 282 268-582 97-388 (400)
58 KOG1156 N-terminal acetyltrans 99.5 1.2E-08 2.6E-13 101.2 43.9 460 151-652 10-509 (700)
59 KOG3785 Uncharacterized conser 99.5 9E-10 2E-14 100.7 33.2 157 501-664 339-498 (557)
60 COG3071 HemY Uncharacterized e 99.5 7.9E-10 1.7E-14 103.3 32.1 186 190-377 87-284 (400)
61 KOG1156 N-terminal acetyltrans 99.4 2.1E-08 4.5E-13 99.5 43.4 469 91-618 20-510 (700)
62 KOG3785 Uncharacterized conser 99.4 2.7E-08 5.8E-13 91.3 37.8 449 91-593 35-497 (557)
63 KOG1129 TPR repeat-containing 99.4 4.1E-11 8.9E-16 108.1 19.3 233 396-659 227-461 (478)
64 KOG1174 Anaphase-promoting com 99.4 2.2E-08 4.9E-13 93.7 37.5 274 389-673 229-517 (564)
65 PF12569 NARP1: NMDA receptor- 99.4 5.3E-08 1.2E-12 99.5 41.5 50 600-650 466-516 (517)
66 KOG1174 Anaphase-promoting com 99.4 4.8E-07 1E-11 85.1 43.7 196 398-625 306-504 (564)
67 TIGR02521 type_IV_pilW type IV 99.3 1.3E-09 2.8E-14 102.8 27.3 200 427-653 31-231 (234)
68 KOG4162 Predicted calmodulin-b 99.3 3.6E-08 7.9E-13 99.9 37.9 448 109-619 318-783 (799)
69 KOG2376 Signal recognition par 99.3 1.2E-07 2.7E-12 93.1 39.7 124 154-285 17-140 (652)
70 PF12569 NARP1: NMDA receptor- 99.3 1.3E-08 2.8E-13 103.9 34.6 287 86-384 12-332 (517)
71 KOG4162 Predicted calmodulin-b 99.3 1.2E-07 2.7E-12 96.1 40.6 131 520-654 650-783 (799)
72 KOG0985 Vesicle coat protein c 99.3 3.6E-07 7.7E-12 95.1 44.1 549 68-675 634-1264(1666)
73 PRK12370 invasion protein regu 99.3 1.4E-09 3E-14 115.3 28.5 149 165-317 320-468 (553)
74 KOG1840 Kinesin light chain [C 99.3 3.5E-09 7.5E-14 106.6 28.8 246 392-653 199-478 (508)
75 TIGR02521 type_IV_pilW type IV 99.3 4.1E-09 8.8E-14 99.4 27.3 200 392-618 31-231 (234)
76 PRK12370 invasion protein regu 99.3 3.1E-09 6.7E-14 112.6 28.8 249 372-655 277-536 (553)
77 KOG2376 Signal recognition par 99.3 3.8E-07 8.1E-12 89.9 39.3 463 115-649 13-515 (652)
78 KOG1129 TPR repeat-containing 99.2 3.7E-10 8E-15 102.1 16.5 223 191-420 229-457 (478)
79 KOG0985 Vesicle coat protein c 99.2 2.9E-06 6.2E-11 88.6 46.1 244 192-451 488-748 (1666)
80 KOG1840 Kinesin light chain [C 99.2 4.7E-09 1E-13 105.7 25.8 252 290-582 199-477 (508)
81 KOG3617 WD40 and TPR repeat-co 99.2 3.6E-07 7.7E-12 93.1 38.2 225 91-350 741-992 (1416)
82 PF13041 PPR_2: PPR repeat fam 99.2 5.3E-11 1.1E-15 79.9 6.4 49 253-301 1-49 (50)
83 COG3063 PilF Tfp pilus assembl 99.2 1.2E-08 2.6E-13 88.4 21.8 186 487-677 37-224 (250)
84 KOG0548 Molecular co-chaperone 99.2 5.2E-07 1.1E-11 88.1 35.4 244 395-672 227-471 (539)
85 KOG4340 Uncharacterized conser 99.2 7.1E-08 1.5E-12 86.5 26.9 404 220-663 10-450 (459)
86 KOG1127 TPR repeat-containing 99.2 2.1E-06 4.6E-11 89.7 40.7 551 91-654 471-1104(1238)
87 PF13041 PPR_2: PPR repeat fam 99.2 1.1E-10 2.4E-15 78.3 6.6 44 555-598 3-46 (50)
88 KOG3616 Selective LIM binding 99.2 4.1E-07 8.9E-12 91.4 34.0 195 397-648 737-931 (1636)
89 COG3063 PilF Tfp pilus assembl 99.2 5.3E-08 1.2E-12 84.4 24.1 207 429-664 37-244 (250)
90 PRK11189 lipoprotein NlpI; Pro 99.1 8.8E-08 1.9E-12 92.8 27.0 227 406-665 40-275 (296)
91 KOG1127 TPR repeat-containing 99.1 2.6E-06 5.5E-11 89.1 35.9 484 129-652 473-994 (1238)
92 PRK04841 transcriptional regul 99.0 7.5E-05 1.6E-09 85.7 51.7 339 300-655 384-761 (903)
93 KOG3617 WD40 and TPR repeat-co 99.0 5.9E-06 1.3E-10 84.5 36.3 411 124-616 738-1171(1416)
94 PRK11189 lipoprotein NlpI; Pro 99.0 3E-07 6.5E-12 89.1 26.8 150 164-317 41-192 (296)
95 KOG2053 Mitochondrial inherita 99.0 9.3E-05 2E-09 77.2 46.0 522 91-652 22-606 (932)
96 PF04733 Coatomer_E: Coatomer 98.9 4.6E-08 9.9E-13 93.1 16.7 82 500-583 182-264 (290)
97 cd05804 StaR_like StaR_like; a 98.9 5.5E-06 1.2E-10 83.6 32.9 203 428-654 115-336 (355)
98 cd05804 StaR_like StaR_like; a 98.9 7.5E-06 1.6E-10 82.6 33.9 310 114-456 6-336 (355)
99 KOG3616 Selective LIM binding 98.9 1.2E-05 2.7E-10 81.2 33.8 107 332-450 739-847 (1636)
100 KOG1914 mRNA cleavage and poly 98.9 9.4E-05 2E-09 72.7 39.8 190 463-654 306-501 (656)
101 KOG0548 Molecular co-chaperone 98.9 3.3E-05 7.1E-10 75.9 34.6 220 359-584 227-455 (539)
102 KOG0624 dsRNA-activated protei 98.9 9E-06 2E-10 74.8 27.7 313 324-654 37-370 (504)
103 KOG1125 TPR repeat-containing 98.9 5E-07 1.1E-11 89.0 21.0 247 401-677 294-559 (579)
104 KOG0624 dsRNA-activated protei 98.8 9.2E-05 2E-09 68.4 33.1 312 221-550 39-371 (504)
105 PRK04841 transcriptional regul 98.8 5E-05 1.1E-09 87.1 39.6 370 192-584 348-760 (903)
106 KOG4340 Uncharacterized conser 98.8 1.9E-05 4.1E-10 71.3 26.9 302 91-418 23-336 (459)
107 KOG3081 Vesicle coat complex C 98.8 1.4E-05 3.1E-10 71.2 25.7 248 300-583 18-270 (299)
108 PF04733 Coatomer_E: Coatomer 98.8 3.7E-07 8E-12 87.0 16.4 249 230-514 11-265 (290)
109 KOG1125 TPR repeat-containing 98.7 4.8E-06 1E-10 82.3 23.6 256 366-644 295-561 (579)
110 KOG1128 Uncharacterized conser 98.7 1.3E-05 2.9E-10 81.4 25.3 216 359-619 401-616 (777)
111 KOG2053 Mitochondrial inherita 98.7 0.00086 1.9E-08 70.3 43.2 516 125-676 20-595 (932)
112 PLN02789 farnesyltranstransfer 98.7 4.6E-05 9.9E-10 73.8 27.6 224 400-652 45-300 (320)
113 KOG1070 rRNA processing protei 98.7 1.2E-05 2.6E-10 87.2 25.2 225 426-675 1457-1686(1710)
114 PRK10370 formate-dependent nit 98.6 8.5E-06 1.8E-10 73.3 21.0 99 484-584 72-173 (198)
115 KOG1070 rRNA processing protei 98.6 2.3E-05 4.9E-10 85.2 26.9 227 391-644 1457-1690(1710)
116 TIGR03302 OM_YfiO outer membra 98.6 7.1E-06 1.5E-10 77.1 20.6 168 484-654 32-232 (235)
117 PLN02789 farnesyltranstransfer 98.6 5.7E-05 1.2E-09 73.1 25.0 203 128-337 51-267 (320)
118 KOG1128 Uncharacterized conser 98.6 2E-05 4.2E-10 80.2 22.2 212 188-420 401-615 (777)
119 PRK14720 transcript cleavage f 98.5 4.1E-05 8.9E-10 82.6 26.0 169 113-319 30-198 (906)
120 PRK10370 formate-dependent nit 98.5 2.1E-05 4.6E-10 70.7 20.6 164 492-672 23-189 (198)
121 PF12854 PPR_1: PPR repeat 98.5 1.4E-07 3.1E-12 56.5 3.8 28 252-279 4-31 (34)
122 COG5010 TadD Flp pilus assembl 98.5 3.4E-05 7.3E-10 69.0 20.2 160 431-617 70-229 (257)
123 PF12854 PPR_1: PPR repeat 98.5 1.7E-07 3.7E-12 56.1 4.0 28 587-614 4-31 (34)
124 PRK15359 type III secretion sy 98.5 1E-05 2.3E-10 68.6 16.1 94 558-653 27-120 (144)
125 COG5107 RNA14 Pre-mRNA 3'-end 98.5 0.0016 3.4E-08 62.9 37.7 146 520-671 397-546 (660)
126 KOG1914 mRNA cleavage and poly 98.5 0.0019 4.2E-08 63.8 41.7 98 484-583 401-500 (656)
127 COG4783 Putative Zn-dependent 98.5 0.00027 5.9E-09 69.1 26.2 148 494-664 315-463 (484)
128 KOG3060 Uncharacterized conser 98.4 0.00032 6.9E-09 62.4 24.1 167 482-653 48-219 (289)
129 PF07079 DUF1347: Protein of u 98.4 0.002 4.3E-08 62.4 44.7 217 427-666 298-531 (549)
130 COG5010 TadD Flp pilus assembl 98.4 6.3E-05 1.4E-09 67.3 20.0 165 484-653 66-230 (257)
131 PRK14720 transcript cleavage f 98.4 0.00013 2.8E-09 78.8 26.1 232 391-636 30-268 (906)
132 TIGR03302 OM_YfiO outer membra 98.4 3.9E-05 8.5E-10 72.1 20.2 187 112-318 31-231 (235)
133 KOG3081 Vesicle coat complex C 98.4 0.0006 1.3E-08 61.2 25.1 121 493-618 145-270 (299)
134 PRK15179 Vi polysaccharide bio 98.4 9.9E-05 2.1E-09 79.0 24.5 147 482-632 83-229 (694)
135 PRK15179 Vi polysaccharide bio 98.4 0.0001 2.2E-09 78.9 23.5 134 182-319 83-217 (694)
136 PRK15359 type III secretion sy 98.4 5.2E-05 1.1E-09 64.3 17.3 92 490-583 29-120 (144)
137 TIGR02552 LcrH_SycD type III s 98.3 2.8E-05 6E-10 65.7 15.2 103 556-662 18-120 (135)
138 TIGR02552 LcrH_SycD type III s 98.3 5.7E-05 1.2E-09 63.8 15.4 98 519-618 16-113 (135)
139 COG4783 Putative Zn-dependent 98.2 0.00084 1.8E-08 65.8 23.2 136 231-385 317-453 (484)
140 PF09976 TPR_21: Tetratricopep 98.1 0.00013 2.9E-09 62.2 14.5 117 533-651 24-144 (145)
141 PF09976 TPR_21: Tetratricopep 98.1 0.00023 5.1E-09 60.7 15.7 127 486-616 13-144 (145)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00018 3.8E-09 71.1 16.2 122 489-617 173-295 (395)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00028 6.1E-09 69.8 16.3 125 521-652 170-295 (395)
144 KOG3060 Uncharacterized conser 98.0 0.0042 9.1E-08 55.5 20.8 163 152-319 55-220 (289)
145 KOG2041 WD40 repeat protein [G 97.9 0.035 7.6E-07 56.9 31.5 205 182-417 689-903 (1189)
146 PF10037 MRP-S27: Mitochondria 97.9 0.0003 6.4E-09 69.9 13.6 123 516-638 62-186 (429)
147 TIGR00756 PPR pentatricopeptid 97.9 2.8E-05 6.1E-10 47.4 4.2 32 258-289 3-34 (35)
148 TIGR00756 PPR pentatricopeptid 97.8 2.9E-05 6.4E-10 47.3 4.3 32 593-624 3-34 (35)
149 KOG0550 Molecular chaperone (D 97.8 0.012 2.7E-07 56.4 22.9 52 228-280 57-108 (486)
150 COG4700 Uncharacterized protei 97.8 0.011 2.4E-07 50.1 19.8 133 517-653 86-221 (251)
151 PRK10153 DNA-binding transcrip 97.8 0.0016 3.5E-08 67.7 18.7 143 516-664 333-490 (517)
152 KOG0550 Molecular chaperone (D 97.8 0.025 5.4E-07 54.5 24.3 68 481-549 283-350 (486)
153 PF05843 Suf: Suppressor of fo 97.8 0.0007 1.5E-08 64.8 14.8 129 487-618 3-135 (280)
154 KOG0553 TPR repeat-containing 97.8 0.00044 9.5E-09 63.4 12.3 99 527-630 88-187 (304)
155 PF13812 PPR_3: Pentatricopept 97.8 4.8E-05 1E-09 46.0 4.3 31 257-287 3-33 (34)
156 KOG2041 WD40 repeat protein [G 97.8 0.066 1.4E-06 55.0 29.3 212 111-356 689-909 (1189)
157 cd00189 TPR Tetratricopeptide 97.8 0.00057 1.2E-08 53.2 11.7 93 559-653 4-96 (100)
158 PF13812 PPR_3: Pentatricopept 97.7 6.8E-05 1.5E-09 45.3 4.5 31 592-622 3-33 (34)
159 PF10037 MRP-S27: Mitochondria 97.7 0.00061 1.3E-08 67.7 13.4 125 479-603 60-186 (429)
160 PLN03088 SGT1, suppressor of 97.7 0.00098 2.1E-08 66.3 15.1 100 526-629 8-107 (356)
161 PF12895 Apc3: Anaphase-promot 97.7 8E-05 1.7E-09 56.5 5.5 80 568-650 2-83 (84)
162 PF07079 DUF1347: Protein of u 97.7 0.062 1.3E-06 52.5 38.7 141 87-231 15-178 (549)
163 PRK02603 photosystem I assembl 97.7 0.0026 5.6E-08 56.1 15.7 87 521-608 36-124 (172)
164 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.002 4.3E-08 52.8 14.1 24 630-653 81-104 (119)
165 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0013 2.7E-08 54.0 12.8 99 521-619 3-105 (119)
166 PF14938 SNAP: Soluble NSF att 97.6 0.006 1.3E-07 58.8 18.9 66 394-459 157-228 (282)
167 PRK10866 outer membrane biogen 97.6 0.013 2.8E-07 54.7 20.3 160 490-652 37-239 (243)
168 PF05843 Suf: Suppressor of fo 97.6 0.0012 2.7E-08 63.1 13.9 144 521-669 2-149 (280)
169 KOG2796 Uncharacterized conser 97.6 0.032 7E-07 50.2 21.1 129 489-618 181-314 (366)
170 COG4235 Cytochrome c biogenesi 97.6 0.0065 1.4E-07 56.3 17.5 117 465-584 137-256 (287)
171 cd00189 TPR Tetratricopeptide 97.6 0.0014 3E-08 51.0 11.8 92 525-618 5-96 (100)
172 KOG0553 TPR repeat-containing 97.6 0.0011 2.5E-08 60.7 12.2 130 492-625 88-221 (304)
173 PRK15363 pathogenicity island 97.6 0.0057 1.2E-07 51.2 15.1 93 525-619 40-132 (157)
174 PLN03088 SGT1, suppressor of 97.6 0.0021 4.5E-08 64.0 15.1 102 491-596 8-109 (356)
175 KOG1130 Predicted G-alpha GTPa 97.6 0.0021 4.4E-08 61.3 13.5 133 521-653 196-343 (639)
176 PRK15363 pathogenicity island 97.6 0.0028 6E-08 53.0 12.9 98 555-654 35-132 (157)
177 PF14938 SNAP: Soluble NSF att 97.5 0.0032 6.9E-08 60.7 15.4 140 523-667 117-275 (282)
178 KOG1130 Predicted G-alpha GTPa 97.5 0.0016 3.4E-08 62.1 12.6 286 263-583 25-343 (639)
179 PF08579 RPM2: Mitochondrial r 97.5 0.0017 3.6E-08 50.2 10.4 74 529-602 34-116 (120)
180 PF08579 RPM2: Mitochondrial r 97.5 0.0012 2.6E-08 51.0 9.6 74 228-301 33-115 (120)
181 CHL00033 ycf3 photosystem I as 97.5 0.0024 5.3E-08 56.1 13.4 63 521-583 36-100 (168)
182 PRK10153 DNA-binding transcrip 97.5 0.0078 1.7E-07 62.7 18.8 144 480-628 332-489 (517)
183 CHL00033 ycf3 photosystem I as 97.5 0.0028 6E-08 55.7 13.1 114 536-651 15-139 (168)
184 PF12895 Apc3: Anaphase-promot 97.5 0.00021 4.5E-09 54.2 5.1 81 533-615 2-83 (84)
185 COG4700 Uncharacterized protei 97.4 0.024 5.2E-07 48.2 16.9 102 112-213 87-188 (251)
186 PF01535 PPR: PPR repeat; Int 97.4 0.00019 4E-09 42.2 3.5 27 258-284 3-29 (31)
187 PRK02603 photosystem I assembl 97.4 0.0083 1.8E-07 52.9 15.4 115 555-675 35-166 (172)
188 PF01535 PPR: PPR repeat; Int 97.4 0.00019 4E-09 42.2 3.4 26 593-618 3-28 (31)
189 PF14559 TPR_19: Tetratricopep 97.4 0.00069 1.5E-08 48.9 7.0 64 601-667 2-65 (68)
190 PF12688 TPR_5: Tetratrico pep 97.4 0.012 2.7E-07 47.4 14.4 89 562-652 8-102 (120)
191 PF06239 ECSIT: Evolutionarily 97.4 0.0031 6.8E-08 55.3 11.2 36 161-197 64-99 (228)
192 PF13432 TPR_16: Tetratricopep 97.3 0.0011 2.3E-08 47.3 6.7 55 597-653 4-59 (65)
193 PF13414 TPR_11: TPR repeat; P 97.3 0.0013 2.7E-08 47.7 6.9 63 589-653 2-66 (69)
194 PF06239 ECSIT: Evolutionarily 97.2 0.006 1.3E-07 53.6 11.8 87 219-305 46-153 (228)
195 COG4235 Cytochrome c biogenesi 97.2 0.019 4E-07 53.4 15.5 98 554-653 155-255 (287)
196 PRK10866 outer membrane biogen 97.2 0.15 3.2E-06 47.6 21.9 57 363-421 39-98 (243)
197 PF12688 TPR_5: Tetratrico pep 97.2 0.027 5.9E-07 45.5 14.6 90 527-618 8-103 (120)
198 KOG2796 Uncharacterized conser 97.1 0.026 5.6E-07 50.8 14.6 137 116-284 179-315 (366)
199 KOG2280 Vacuolar assembly/sort 97.1 0.52 1.1E-05 49.4 33.0 111 520-649 684-794 (829)
200 PF13432 TPR_16: Tetratricopep 97.1 0.0029 6.2E-08 45.1 7.0 57 561-618 3-59 (65)
201 PF13525 YfiO: Outer membrane 97.1 0.054 1.2E-06 49.2 16.8 63 488-550 8-72 (203)
202 PF14559 TPR_19: Tetratricopep 97.0 0.0026 5.5E-08 45.9 6.5 57 567-626 3-59 (68)
203 PF13281 DUF4071: Domain of un 97.0 0.24 5.3E-06 48.5 21.4 169 484-654 140-334 (374)
204 PF13525 YfiO: Outer membrane 96.9 0.12 2.7E-06 46.8 18.2 170 434-645 12-198 (203)
205 PF13414 TPR_11: TPR repeat; P 96.9 0.0041 9E-08 44.9 6.9 63 555-618 3-66 (69)
206 PRK10803 tol-pal system protei 96.9 0.029 6.3E-07 52.7 14.1 84 566-653 154-245 (263)
207 PF04840 Vps16_C: Vps16, C-ter 96.9 0.48 1E-05 46.1 28.1 105 328-449 180-284 (319)
208 KOG1538 Uncharacterized conser 96.9 0.13 2.9E-06 52.5 18.5 280 255-619 556-846 (1081)
209 PF13371 TPR_9: Tetratricopept 96.9 0.0074 1.6E-07 44.2 7.8 63 598-663 3-65 (73)
210 PRK10803 tol-pal system protei 96.8 0.035 7.6E-07 52.2 13.4 102 522-625 145-250 (263)
211 COG3898 Uncharacterized membra 96.7 0.64 1.4E-05 44.8 30.6 223 403-658 165-396 (531)
212 PF03704 BTAD: Bacterial trans 96.7 0.09 2E-06 44.8 14.5 58 594-652 66-123 (146)
213 PF03704 BTAD: Bacterial trans 96.7 0.078 1.7E-06 45.2 14.0 71 487-558 64-139 (146)
214 KOG2114 Vacuolar assembly/sort 96.6 1.1 2.4E-05 47.7 23.7 176 154-353 339-518 (933)
215 PF13424 TPR_12: Tetratricopep 96.5 0.0078 1.7E-07 44.7 6.0 61 592-652 7-73 (78)
216 KOG1538 Uncharacterized conser 96.5 0.28 6E-06 50.3 17.8 100 289-420 746-845 (1081)
217 PRK15331 chaperone protein Sic 96.5 0.25 5.4E-06 41.9 14.9 87 565-653 47-133 (165)
218 COG3898 Uncharacterized membra 96.4 1 2.2E-05 43.6 30.6 305 92-420 67-391 (531)
219 PF04840 Vps16_C: Vps16, C-ter 96.4 1.1 2.3E-05 43.7 30.5 107 292-415 179-285 (319)
220 PF13424 TPR_12: Tetratricopep 96.4 0.011 2.3E-07 44.0 6.0 63 556-618 6-74 (78)
221 PRK15331 chaperone protein Sic 96.3 0.36 7.8E-06 40.9 15.0 88 494-583 46-133 (165)
222 KOG2280 Vacuolar assembly/sort 96.3 1.9 4E-05 45.6 27.4 339 75-452 426-795 (829)
223 PF13371 TPR_9: Tetratricopept 96.2 0.035 7.5E-07 40.5 7.8 54 564-618 4-57 (73)
224 COG5107 RNA14 Pre-mRNA 3'-end 96.2 1.5 3.3E-05 43.2 35.6 147 428-601 398-546 (660)
225 PLN03098 LPA1 LOW PSII ACCUMUL 96.2 0.061 1.3E-06 53.4 11.3 97 554-656 74-176 (453)
226 KOG1920 IkappaB kinase complex 96.1 2.6 5.6E-05 47.1 23.7 31 287-318 788-820 (1265)
227 KOG0543 FKBP-type peptidyl-pro 96.1 0.18 4E-06 48.9 13.7 97 555-654 257-355 (397)
228 PF12921 ATP13: Mitochondrial 96.1 0.15 3.3E-06 41.6 11.5 101 519-639 1-102 (126)
229 PF12921 ATP13: Mitochondrial 95.8 0.12 2.7E-06 42.1 9.9 96 428-531 3-99 (126)
230 KOG1585 Protein required for f 95.8 0.94 2E-05 40.8 15.6 145 487-648 93-250 (308)
231 COG3118 Thioredoxin domain-con 95.7 1.1 2.4E-05 41.9 16.3 53 229-282 143-195 (304)
232 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.17 3.6E-06 50.4 11.9 66 517-584 72-141 (453)
233 smart00299 CLH Clathrin heavy 95.6 1 2.2E-05 38.0 15.3 44 489-533 11-54 (140)
234 COG3118 Thioredoxin domain-con 95.5 1.8 3.9E-05 40.5 17.1 165 167-339 121-286 (304)
235 PF10300 DUF3808: Protein of u 95.5 1.3 2.8E-05 46.0 18.4 164 487-653 190-375 (468)
236 KOG4555 TPR repeat-containing 95.4 0.36 7.8E-06 38.6 10.6 91 529-620 52-145 (175)
237 KOG1920 IkappaB kinase complex 95.4 6.2 0.00013 44.3 26.2 127 153-283 681-820 (1265)
238 COG4105 ComL DNA uptake lipopr 95.3 2.3 4.9E-05 39.1 21.5 171 486-661 36-238 (254)
239 COG1729 Uncharacterized protei 95.3 0.24 5.1E-06 45.7 10.9 61 189-249 182-244 (262)
240 COG1729 Uncharacterized protei 95.3 0.27 5.8E-06 45.3 11.2 95 557-654 144-244 (262)
241 KOG0543 FKBP-type peptidyl-pro 95.2 0.25 5.4E-06 48.0 11.2 78 591-671 258-335 (397)
242 COG4105 ComL DNA uptake lipopr 95.1 2.6 5.7E-05 38.7 18.4 57 491-548 173-232 (254)
243 KOG2610 Uncharacterized conser 95.1 0.6 1.3E-05 44.0 12.7 116 498-616 116-235 (491)
244 PF08631 SPO22: Meiosis protei 95.0 3.4 7.5E-05 39.6 25.3 230 403-652 4-273 (278)
245 PF13281 DUF4071: Domain of un 95.0 4 8.7E-05 40.3 23.2 52 426-477 304-355 (374)
246 KOG4555 TPR repeat-containing 95.0 0.35 7.6E-06 38.7 9.5 92 563-655 51-145 (175)
247 PF10300 DUF3808: Protein of u 95.0 0.79 1.7E-05 47.6 15.1 129 84-214 194-334 (468)
248 smart00299 CLH Clathrin heavy 95.0 1.9 4.1E-05 36.3 15.7 128 523-673 10-138 (140)
249 KOG1941 Acetylcholine receptor 94.8 2.2 4.7E-05 40.9 15.6 57 491-547 128-189 (518)
250 PRK11906 transcriptional regul 94.8 3.4 7.3E-05 41.6 17.8 110 501-615 320-432 (458)
251 KOG1585 Protein required for f 94.7 2.6 5.6E-05 38.2 14.9 206 223-450 34-250 (308)
252 PRK11906 transcriptional regul 94.6 3.6 7.9E-05 41.4 17.6 146 501-653 274-435 (458)
253 KOG1258 mRNA processing protei 94.5 7 0.00015 40.5 33.5 398 93-534 60-489 (577)
254 KOG2114 Vacuolar assembly/sort 94.5 8.7 0.00019 41.5 28.0 46 596-645 711-756 (933)
255 PF04184 ST7: ST7 protein; In 94.4 3.5 7.7E-05 41.6 16.9 58 525-582 264-322 (539)
256 PF04053 Coatomer_WDAD: Coatom 94.3 2 4.4E-05 44.0 15.8 99 495-614 328-426 (443)
257 PF04053 Coatomer_WDAD: Coatom 94.0 2.7 5.9E-05 43.1 16.0 27 325-351 347-373 (443)
258 COG4649 Uncharacterized protei 94.0 3.5 7.7E-05 35.1 14.4 136 487-623 61-200 (221)
259 PF09205 DUF1955: Domain of un 94.0 2.8 6E-05 33.9 16.5 67 485-552 86-152 (161)
260 KOG3941 Intermediate in Toll s 93.8 0.75 1.6E-05 42.3 10.1 69 165-234 88-172 (406)
261 PF04184 ST7: ST7 protein; In 93.7 3.2 6.8E-05 42.0 15.1 57 561-617 265-322 (539)
262 KOG1941 Acetylcholine receptor 93.7 6.9 0.00015 37.7 19.4 174 358-548 85-274 (518)
263 COG4649 Uncharacterized protei 93.7 4 8.6E-05 34.8 13.8 135 113-249 58-196 (221)
264 PF07035 Mic1: Colon cancer-as 93.6 4.2 9.2E-05 35.0 15.2 100 241-350 15-114 (167)
265 PF13512 TPR_18: Tetratricopep 93.5 2.3 5.1E-05 35.2 11.7 71 160-230 21-92 (142)
266 COG0457 NrfG FOG: TPR repeat [ 93.5 6.2 0.00013 36.3 25.0 223 92-319 37-265 (291)
267 KOG3941 Intermediate in Toll s 93.3 0.84 1.8E-05 42.0 9.6 50 518-567 65-119 (406)
268 PF13512 TPR_18: Tetratricopep 93.2 3.5 7.6E-05 34.2 12.3 74 492-566 17-93 (142)
269 PF09613 HrpB1_HrpK: Bacterial 93.2 1 2.2E-05 38.1 9.4 112 555-673 7-122 (160)
270 COG3629 DnrI DNA-binding trans 93.1 1.1 2.4E-05 42.0 10.6 76 555-631 153-233 (280)
271 PF09205 DUF1955: Domain of un 93.1 4 8.7E-05 33.1 15.4 68 589-657 85-152 (161)
272 COG0457 NrfG FOG: TPR repeat [ 93.0 7.3 0.00016 35.8 30.4 223 406-654 37-265 (291)
273 COG1747 Uncharacterized N-term 92.9 12 0.00026 38.0 23.0 163 484-654 65-234 (711)
274 PF08631 SPO22: Meiosis protei 92.7 9.9 0.00021 36.5 23.7 122 91-214 6-150 (278)
275 KOG2610 Uncharacterized conser 92.6 7.2 0.00016 37.1 14.8 117 196-315 114-234 (491)
276 PF02259 FAT: FAT domain; Int 92.6 12 0.00026 37.4 24.6 64 555-618 146-212 (352)
277 PF13428 TPR_14: Tetratricopep 92.5 0.49 1.1E-05 30.2 5.3 27 488-514 4-30 (44)
278 PF13428 TPR_14: Tetratricopep 92.5 0.48 1E-05 30.2 5.3 23 596-618 7-29 (44)
279 COG3629 DnrI DNA-binding trans 92.2 1.8 4E-05 40.7 10.7 78 486-564 154-236 (280)
280 PF09613 HrpB1_HrpK: Bacterial 91.9 7.1 0.00015 33.2 13.2 51 125-176 21-71 (160)
281 PF04097 Nic96: Nup93/Nic96; 91.7 23 0.0005 38.5 20.7 21 530-553 515-535 (613)
282 PF13176 TPR_7: Tetratricopept 91.3 0.46 1E-05 28.7 4.0 26 627-652 1-26 (36)
283 PF13176 TPR_7: Tetratricopept 91.3 0.51 1.1E-05 28.5 4.1 27 592-618 1-27 (36)
284 PF10602 RPN7: 26S proteasome 90.9 2.3 5E-05 37.4 9.6 62 522-583 38-101 (177)
285 PF10602 RPN7: 26S proteasome 90.9 3.7 8E-05 36.1 10.8 98 556-653 37-141 (177)
286 PF13170 DUF4003: Protein of u 90.8 16 0.00035 35.2 17.9 132 501-634 78-226 (297)
287 KOG1586 Protein required for f 90.7 13 0.00027 33.8 21.6 25 400-424 162-186 (288)
288 PF00637 Clathrin: Region in C 90.7 0.0075 1.6E-07 51.3 -6.1 128 526-675 13-140 (143)
289 KOG0276 Vesicle coat complex C 90.7 5.3 0.00011 41.2 12.6 96 336-453 597-692 (794)
290 PF00515 TPR_1: Tetratricopept 90.6 0.66 1.4E-05 27.4 4.2 27 627-653 3-29 (34)
291 cd00923 Cyt_c_Oxidase_Va Cytoc 90.3 2.2 4.8E-05 32.3 7.3 60 572-632 24-83 (103)
292 PF07719 TPR_2: Tetratricopept 90.3 0.66 1.4E-05 27.3 4.0 26 628-653 4-29 (34)
293 PF07035 Mic1: Colon cancer-as 89.9 12 0.00026 32.3 15.0 23 258-280 92-114 (167)
294 KOG0890 Protein kinase of the 89.9 59 0.0013 40.2 34.2 149 119-279 1388-1542(2382)
295 KOG2062 26S proteasome regulat 89.7 32 0.00069 36.9 32.9 120 530-653 511-634 (929)
296 TIGR02561 HrpB1_HrpK type III 89.6 3.5 7.6E-05 34.3 8.7 101 554-661 6-113 (153)
297 PF00515 TPR_1: Tetratricopept 89.5 0.93 2E-05 26.7 4.2 27 592-618 3-29 (34)
298 PF02284 COX5A: Cytochrome c o 89.1 6.6 0.00014 30.2 9.1 60 573-633 28-87 (108)
299 PF07719 TPR_2: Tetratricopept 88.7 1.1 2.4E-05 26.3 4.2 27 592-618 3-29 (34)
300 PF13431 TPR_17: Tetratricopep 88.6 0.59 1.3E-05 27.8 2.8 21 625-645 13-33 (34)
301 PF02259 FAT: FAT domain; Int 88.5 29 0.00062 34.7 25.8 65 391-455 145-212 (352)
302 KOG4234 TPR repeat-containing 88.1 14 0.00031 32.5 11.6 96 526-625 101-201 (271)
303 PF06552 TOM20_plant: Plant sp 88.0 3.1 6.8E-05 35.9 7.7 112 536-656 7-138 (186)
304 KOG2396 HAT (Half-A-TPR) repea 88.0 33 0.00072 35.0 40.4 99 552-653 456-558 (568)
305 KOG4570 Uncharacterized conser 87.9 7.5 0.00016 36.7 10.5 103 515-619 59-164 (418)
306 KOG4648 Uncharacterized conser 87.8 3 6.5E-05 39.7 8.1 94 526-624 103-197 (536)
307 PRK11619 lytic murein transgly 87.5 48 0.001 36.2 41.5 23 490-512 351-373 (644)
308 COG2976 Uncharacterized protei 87.4 20 0.00042 31.6 14.3 89 529-619 98-188 (207)
309 KOG1550 Extracellular protein 87.4 45 0.00098 35.8 23.5 147 165-320 228-394 (552)
310 PF13431 TPR_17: Tetratricopep 87.0 0.86 1.9E-05 27.1 2.8 22 518-539 11-32 (34)
311 KOG1550 Extracellular protein 86.8 48 0.0011 35.6 26.0 77 500-584 454-538 (552)
312 COG4785 NlpI Lipoprotein NlpI, 86.5 24 0.00051 31.7 14.9 63 113-176 98-160 (297)
313 COG4785 NlpI Lipoprotein NlpI, 86.4 24 0.00052 31.6 15.9 29 393-421 238-266 (297)
314 PF00637 Clathrin: Region in C 86.4 0.8 1.7E-05 38.8 3.5 83 226-315 13-95 (143)
315 PF13170 DUF4003: Protein of u 86.2 34 0.00073 33.1 21.3 135 272-436 79-226 (297)
316 cd00923 Cyt_c_Oxidase_Va Cytoc 85.6 6.6 0.00014 29.8 7.3 47 501-547 23-69 (103)
317 KOG4570 Uncharacterized conser 85.3 3 6.5E-05 39.2 6.7 48 235-282 115-162 (418)
318 KOG1258 mRNA processing protei 85.1 53 0.0012 34.4 38.7 130 117-249 48-180 (577)
319 KOG0276 Vesicle coat complex C 84.6 14 0.00031 38.3 11.5 148 233-417 599-746 (794)
320 PF06552 TOM20_plant: Plant sp 84.2 21 0.00045 31.1 10.7 111 501-620 7-137 (186)
321 PF02284 COX5A: Cytochrome c o 84.0 5.7 0.00012 30.5 6.4 46 503-548 28-73 (108)
322 KOG1464 COP9 signalosome, subu 83.8 37 0.0008 31.5 16.5 222 285-546 21-257 (440)
323 PF13181 TPR_8: Tetratricopept 83.8 1.8 3.9E-05 25.4 3.3 26 628-653 4-29 (34)
324 PF11207 DUF2989: Protein of u 83.7 12 0.00025 33.3 9.3 72 572-644 123-197 (203)
325 PF13374 TPR_10: Tetratricopep 83.6 2.7 5.9E-05 26.0 4.3 28 626-653 3-30 (42)
326 PRK09687 putative lyase; Provi 83.5 43 0.00093 32.1 26.6 15 114-128 37-51 (280)
327 COG2909 MalT ATP-dependent tra 83.0 82 0.0018 34.9 26.9 221 231-452 426-684 (894)
328 TIGR02561 HrpB1_HrpK type III 83.0 27 0.00058 29.3 11.8 50 126-176 22-71 (153)
329 PF13374 TPR_10: Tetratricopep 82.9 3.3 7.1E-05 25.6 4.5 28 591-618 3-30 (42)
330 PRK09687 putative lyase; Provi 82.8 46 0.001 31.9 29.1 171 483-672 103-279 (280)
331 PRK15180 Vi polysaccharide bio 82.5 28 0.00061 35.1 12.2 98 483-584 323-420 (831)
332 KOG4648 Uncharacterized conser 82.4 10 0.00023 36.2 9.0 97 490-590 102-198 (536)
333 COG3947 Response regulator con 82.1 46 0.001 31.4 15.6 71 592-663 281-356 (361)
334 COG2976 Uncharacterized protei 81.6 37 0.0008 30.0 14.0 91 560-655 94-189 (207)
335 PF13181 TPR_8: Tetratricopept 81.6 2.7 5.8E-05 24.6 3.5 27 592-618 3-29 (34)
336 KOG2063 Vacuolar assembly/sort 81.2 1E+02 0.0022 34.7 17.5 115 223-337 507-638 (877)
337 PF08424 NRDE-2: NRDE-2, neces 80.8 60 0.0013 31.9 18.0 136 484-621 18-185 (321)
338 COG4455 ImpE Protein of avirul 80.8 13 0.00028 33.3 8.3 76 488-564 4-81 (273)
339 PF10345 Cohesin_load: Cohesin 80.7 92 0.002 34.0 42.6 187 95-282 38-252 (608)
340 PF13929 mRNA_stabil: mRNA sta 80.6 53 0.0011 31.2 16.3 117 163-279 142-262 (292)
341 PF10345 Cohesin_load: Cohesin 80.1 97 0.0021 33.9 43.9 185 167-352 39-252 (608)
342 KOG1586 Protein required for f 80.0 48 0.001 30.3 17.8 16 438-453 25-40 (288)
343 TIGR03504 FimV_Cterm FimV C-te 79.1 3.4 7.4E-05 26.3 3.3 23 596-618 5-27 (44)
344 KOG4234 TPR repeat-containing 78.8 41 0.00089 29.8 10.6 54 529-583 143-196 (271)
345 KOG4077 Cytochrome c oxidase, 77.8 16 0.00036 29.3 7.3 58 574-632 68-125 (149)
346 KOG2066 Vacuolar assembly/sort 77.8 1.1E+02 0.0024 33.3 25.7 76 122-202 364-440 (846)
347 COG4455 ImpE Protein of avirul 77.5 40 0.00086 30.4 10.3 54 262-316 8-61 (273)
348 PF13174 TPR_6: Tetratricopept 77.1 4.7 0.0001 23.2 3.5 20 599-618 9-28 (33)
349 KOG2066 Vacuolar assembly/sort 76.5 1.2E+02 0.0026 33.0 27.4 53 228-282 364-419 (846)
350 PRK15180 Vi polysaccharide bio 76.2 94 0.002 31.6 32.1 103 568-672 711-825 (831)
351 PF13929 mRNA_stabil: mRNA sta 75.7 75 0.0016 30.2 17.4 57 517-573 199-256 (292)
352 PF07721 TPR_4: Tetratricopept 75.6 4.2 9.2E-05 22.2 2.7 21 153-173 5-25 (26)
353 COG3947 Response regulator con 74.2 81 0.0018 29.9 18.8 71 557-628 281-356 (361)
354 PF13174 TPR_6: Tetratricopept 74.1 3.8 8.3E-05 23.6 2.6 27 628-654 3-29 (33)
355 KOG2471 TPR repeat-containing 73.7 1.1E+02 0.0024 31.3 17.7 110 563-673 248-382 (696)
356 TIGR02508 type_III_yscG type I 73.6 31 0.00067 26.6 7.5 51 158-215 48-98 (115)
357 PF14853 Fis1_TPR_C: Fis1 C-te 73.4 11 0.00023 25.3 4.6 36 631-668 7-42 (53)
358 KOG0687 26S proteasome regulat 73.1 92 0.002 30.0 13.6 67 394-460 106-177 (393)
359 KOG4642 Chaperone-dependent E3 72.9 70 0.0015 29.4 10.8 118 495-616 20-143 (284)
360 KOG4507 Uncharacterized conser 72.8 17 0.00036 37.7 7.8 105 159-266 617-721 (886)
361 PF11207 DUF2989: Protein of u 71.9 74 0.0016 28.4 12.4 72 537-609 123-197 (203)
362 PF04910 Tcf25: Transcriptiona 71.8 1.1E+02 0.0025 30.6 19.3 100 148-247 39-166 (360)
363 TIGR03504 FimV_Cterm FimV C-te 69.8 12 0.00025 23.9 4.0 23 561-583 5-27 (44)
364 PF07163 Pex26: Pex26 protein; 69.8 66 0.0014 30.3 10.3 88 491-578 89-181 (309)
365 KOG4507 Uncharacterized conser 68.8 20 0.00044 37.1 7.5 102 552-654 604-705 (886)
366 KOG2908 26S proteasome regulat 67.4 79 0.0017 30.6 10.5 53 531-583 86-143 (380)
367 PF09986 DUF2225: Uncharacteri 67.3 1E+02 0.0022 28.2 11.4 68 591-658 119-198 (214)
368 COG5159 RPN6 26S proteasome re 67.0 1.2E+02 0.0025 28.7 19.6 31 192-222 10-40 (421)
369 PF10579 Rapsyn_N: Rapsyn N-te 66.4 18 0.00039 26.4 4.8 46 602-647 18-65 (80)
370 KOG3364 Membrane protein invol 66.4 74 0.0016 26.3 10.4 20 599-618 80-99 (149)
371 KOG4642 Chaperone-dependent E3 66.2 1.1E+02 0.0024 28.2 12.4 113 449-564 9-126 (284)
372 PF10579 Rapsyn_N: Rapsyn N-te 65.9 20 0.00043 26.2 4.9 46 567-612 18-65 (80)
373 PF04097 Nic96: Nup93/Nic96; 65.4 2.1E+02 0.0046 31.2 23.3 42 225-267 116-157 (613)
374 PF08424 NRDE-2: NRDE-2, neces 64.8 1.5E+02 0.0032 29.2 19.0 138 517-656 16-185 (321)
375 COG1747 Uncharacterized N-term 64.6 1.8E+02 0.0039 30.1 25.4 165 390-584 64-234 (711)
376 KOG0687 26S proteasome regulat 64.3 1.4E+02 0.0031 28.8 12.9 97 555-653 104-209 (393)
377 KOG0376 Serine-threonine phosp 64.2 11 0.00023 38.1 4.6 105 527-637 11-117 (476)
378 smart00028 TPR Tetratricopepti 63.2 15 0.00033 20.1 3.7 26 628-653 4-29 (34)
379 PF08311 Mad3_BUB1_I: Mad3/BUB 61.8 88 0.0019 25.6 9.3 44 608-651 81-125 (126)
380 KOG2297 Predicted translation 61.7 1.5E+02 0.0033 28.3 17.4 18 592-609 323-340 (412)
381 TIGR02508 type_III_yscG type I 61.5 74 0.0016 24.6 8.5 53 562-620 46-98 (115)
382 COG0790 FOG: TPR repeat, SEL1 60.6 1.6E+02 0.0035 28.3 25.4 156 499-664 91-276 (292)
383 cd00280 TRFH Telomeric Repeat 60.1 76 0.0016 27.8 8.2 66 570-638 84-156 (200)
384 KOG1464 COP9 signalosome, subu 60.1 1.5E+02 0.0033 27.7 17.3 212 422-653 21-259 (440)
385 PF07163 Pex26: Pex26 protein; 60.1 1.6E+02 0.0034 27.9 12.7 109 363-478 90-204 (309)
386 PHA02875 ankyrin repeat protei 60.1 2.1E+02 0.0045 29.4 16.5 12 415-426 218-229 (413)
387 PF14669 Asp_Glu_race_2: Putat 59.6 1.3E+02 0.0027 26.7 14.8 56 397-452 137-206 (233)
388 cd08819 CARD_MDA5_2 Caspase ac 59.4 68 0.0015 24.1 6.8 38 232-274 48-85 (88)
389 PF12862 Apc5: Anaphase-promot 58.5 59 0.0013 24.9 7.0 23 631-653 47-69 (94)
390 COG2909 MalT ATP-dependent tra 58.2 3.1E+02 0.0067 30.7 28.9 230 402-650 425-684 (894)
391 PF09670 Cas_Cas02710: CRISPR- 56.5 2E+02 0.0044 29.1 12.3 55 494-549 140-198 (379)
392 PF14689 SPOB_a: Sensor_kinase 55.9 34 0.00073 23.8 4.7 25 628-652 26-50 (62)
393 PF11663 Toxin_YhaV: Toxin wit 55.8 15 0.00032 30.1 3.2 26 635-660 105-130 (140)
394 KOG4077 Cytochrome c oxidase, 55.7 86 0.0019 25.4 7.2 40 544-583 73-112 (149)
395 PF11846 DUF3366: Domain of un 54.8 30 0.00064 31.0 5.6 30 147-176 142-171 (193)
396 KOG2908 26S proteasome regulat 54.6 1.4E+02 0.003 29.1 9.7 94 558-653 78-182 (380)
397 KOG2063 Vacuolar assembly/sort 53.0 3.9E+02 0.0085 30.4 20.1 27 257-283 506-532 (877)
398 PRK10941 hypothetical protein; 52.5 2.2E+02 0.0047 27.2 11.1 76 594-671 185-262 (269)
399 PF00244 14-3-3: 14-3-3 protei 51.8 2E+02 0.0044 26.7 10.8 59 490-548 6-65 (236)
400 COG0735 Fur Fe2+/Zn2+ uptake r 51.1 90 0.0019 26.4 7.5 60 105-165 12-71 (145)
401 PF11846 DUF3366: Domain of un 50.9 72 0.0016 28.5 7.4 32 622-653 141-172 (193)
402 COG5187 RPN7 26S proteasome re 50.7 2.3E+02 0.0049 27.0 10.9 121 554-674 114-241 (412)
403 PF11663 Toxin_YhaV: Toxin wit 50.6 14 0.00031 30.1 2.4 32 566-599 106-137 (140)
404 PF11848 DUF3368: Domain of un 50.4 66 0.0014 20.9 5.1 31 637-667 14-44 (48)
405 PF14669 Asp_Glu_race_2: Putat 50.3 1.8E+02 0.004 25.7 14.7 54 561-614 138-205 (233)
406 PRK10941 hypothetical protein; 50.0 2.4E+02 0.0051 26.9 11.0 57 526-583 187-243 (269)
407 PRK11619 lytic murein transgly 49.7 3.9E+02 0.0085 29.4 40.6 115 337-455 253-374 (644)
408 PF09986 DUF2225: Uncharacteri 49.7 2.1E+02 0.0045 26.2 11.4 25 560-584 170-194 (214)
409 PRK14956 DNA polymerase III su 49.4 3.3E+02 0.0072 28.5 12.5 101 502-626 183-284 (484)
410 PF14853 Fis1_TPR_C: Fis1 C-te 49.4 70 0.0015 21.4 5.2 26 598-625 9-34 (53)
411 KOG0991 Replication factor C, 48.6 2.2E+02 0.0048 26.2 12.7 141 487-637 132-284 (333)
412 PF04762 IKI3: IKI3 family; I 48.6 4.7E+02 0.01 30.4 14.8 135 463-616 791-927 (928)
413 cd00280 TRFH Telomeric Repeat 48.0 1.4E+02 0.0029 26.3 7.8 66 536-604 85-157 (200)
414 PF13934 ELYS: Nuclear pore co 47.9 2.3E+02 0.005 26.2 11.0 121 112-244 76-197 (226)
415 PF14689 SPOB_a: Sensor_kinase 47.1 60 0.0013 22.5 4.8 20 527-546 30-49 (62)
416 PF15297 CKAP2_C: Cytoskeleton 47.1 2.2E+02 0.0048 27.9 10.0 61 572-634 120-184 (353)
417 PF07575 Nucleopor_Nup85: Nup8 46.7 2.1E+02 0.0046 30.9 11.4 93 256-352 373-465 (566)
418 PF04190 DUF410: Protein of un 46.5 2.6E+02 0.0057 26.5 17.1 81 324-421 89-170 (260)
419 cd08819 CARD_MDA5_2 Caspase ac 46.4 1.3E+02 0.0027 22.7 6.9 38 337-375 48-85 (88)
420 PF09670 Cas_Cas02710: CRISPR- 45.4 3.4E+02 0.0074 27.5 12.5 52 462-514 143-198 (379)
421 PRK13184 pknD serine/threonine 45.2 5.4E+02 0.012 29.7 26.1 89 565-653 777-868 (932)
422 KOG4521 Nuclear pore complex, 44.8 4.6E+02 0.01 30.5 13.1 137 151-307 922-1071(1480)
423 PF12862 Apc5: Anaphase-promot 44.7 1.4E+02 0.003 22.8 7.9 24 596-619 47-70 (94)
424 PF10366 Vps39_1: Vacuolar sor 44.5 1E+02 0.0022 24.4 6.4 19 359-377 42-60 (108)
425 COG0790 FOG: TPR repeat, SEL1 44.4 3E+02 0.0064 26.5 25.2 84 500-586 128-222 (292)
426 PF11848 DUF3368: Domain of un 43.7 85 0.0018 20.4 4.9 34 124-157 12-45 (48)
427 PF09477 Type_III_YscG: Bacter 43.5 1.6E+02 0.0035 23.2 9.2 10 159-168 50-59 (116)
428 KOG1308 Hsp70-interacting prot 42.4 17 0.00037 35.0 2.0 118 531-653 125-243 (377)
429 PF09454 Vps23_core: Vps23 cor 42.4 51 0.0011 23.2 3.9 49 588-637 6-54 (65)
430 KOG2396 HAT (Half-A-TPR) repea 41.6 4.3E+02 0.0093 27.5 42.4 95 522-618 462-558 (568)
431 KOG0376 Serine-threonine phosp 41.5 63 0.0014 32.9 5.8 106 491-602 10-117 (476)
432 PF10366 Vps39_1: Vacuolar sor 41.4 1.8E+02 0.0039 23.1 7.5 27 257-283 41-67 (108)
433 COG0735 Fur Fe2+/Zn2+ uptake r 41.1 1.9E+02 0.0042 24.4 8.0 60 614-674 10-69 (145)
434 PRK13342 recombination factor 40.8 4.2E+02 0.0092 27.2 19.6 46 489-534 231-279 (413)
435 PF11768 DUF3312: Protein of u 40.4 4.5E+02 0.0098 27.8 11.6 60 152-214 411-473 (545)
436 KOG2422 Uncharacterized conser 40.4 4.8E+02 0.01 27.7 19.3 91 192-282 349-446 (665)
437 COG5159 RPN6 26S proteasome re 39.9 3.4E+02 0.0073 25.8 21.7 100 431-549 129-235 (421)
438 KOG2659 LisH motif-containing 39.7 3E+02 0.0065 25.3 9.1 56 397-452 69-128 (228)
439 KOG2659 LisH motif-containing 39.7 3E+02 0.0066 25.2 9.3 101 516-618 22-131 (228)
440 KOG0890 Protein kinase of the 39.1 9.5E+02 0.021 30.8 36.1 147 89-244 1394-1542(2382)
441 PRK09462 fur ferric uptake reg 38.9 1.7E+02 0.0036 24.8 7.4 59 106-165 9-68 (148)
442 COG5187 RPN7 26S proteasome re 38.9 3.5E+02 0.0077 25.8 16.1 100 518-619 113-221 (412)
443 KOG0128 RNA-binding protein SA 38.8 6E+02 0.013 28.4 38.2 110 536-645 442-554 (881)
444 PRK11639 zinc uptake transcrip 38.4 1.8E+02 0.0038 25.4 7.6 60 106-166 18-77 (169)
445 KOG2034 Vacuolar sorting prote 37.9 6.4E+02 0.014 28.4 27.2 54 119-176 363-416 (911)
446 PRK10564 maltose regulon perip 37.2 70 0.0015 30.6 5.1 30 258-287 260-289 (303)
447 PRK13800 putative oxidoreducta 37.2 7.2E+02 0.016 28.9 30.8 167 483-669 726-893 (897)
448 KOG2168 Cullins [Cell cycle co 37.0 6.5E+02 0.014 28.3 26.7 33 599-633 797-829 (835)
449 cd08326 CARD_CASP9 Caspase act 37.0 1.8E+02 0.0039 21.8 7.4 60 205-272 19-78 (84)
450 PRK10564 maltose regulon perip 35.6 77 0.0017 30.3 5.1 30 593-622 260-289 (303)
451 PF02184 HAT: HAT (Half-A-TPR) 35.5 90 0.0019 18.3 3.4 12 607-618 4-15 (32)
452 KOG4279 Serine/threonine prote 35.4 6.5E+02 0.014 27.8 14.5 52 370-421 257-316 (1226)
453 PF11817 Foie-gras_1: Foie gra 35.3 2E+02 0.0042 27.0 8.0 21 596-616 184-204 (247)
454 PRK09857 putative transposase; 34.9 3.6E+02 0.0079 26.1 9.8 63 560-623 211-273 (292)
455 PF09454 Vps23_core: Vps23 cor 34.8 1.1E+02 0.0023 21.6 4.5 48 253-301 6-53 (65)
456 PF09868 DUF2095: Uncharacteri 33.8 1.6E+02 0.0035 23.3 5.6 37 632-669 68-104 (128)
457 smart00386 HAT HAT (Half-A-TPR 33.7 89 0.0019 17.3 4.3 12 607-618 4-15 (33)
458 PF13762 MNE1: Mitochondrial s 33.7 2.9E+02 0.0064 23.3 9.7 47 393-439 80-127 (145)
459 PF11838 ERAP1_C: ERAP1-like C 33.6 4.6E+02 0.01 25.6 14.5 82 201-285 146-231 (324)
460 PRK09857 putative transposase; 33.2 3.1E+02 0.0067 26.6 9.0 66 593-659 209-274 (292)
461 cd07153 Fur_like Ferric uptake 33.1 1.2E+02 0.0027 24.1 5.6 43 632-674 7-49 (116)
462 KOG2422 Uncharacterized conser 32.6 6.4E+02 0.014 26.9 17.7 51 531-581 353-404 (665)
463 KOG1308 Hsp70-interacting prot 32.6 32 0.00069 33.3 2.1 92 496-590 125-217 (377)
464 PRK14956 DNA polymerase III su 32.4 5.8E+02 0.013 26.8 11.1 99 132-255 184-283 (484)
465 PF01475 FUR: Ferric uptake re 32.3 1.1E+02 0.0024 24.6 5.1 48 629-676 11-58 (120)
466 PF11817 Foie-gras_1: Foie gra 32.2 2.4E+02 0.0053 26.4 8.1 22 592-613 220-241 (247)
467 PF11838 ERAP1_C: ERAP1-like C 32.1 4.9E+02 0.011 25.4 18.2 110 236-350 146-262 (324)
468 KOG3364 Membrane protein invol 31.8 3E+02 0.0066 22.9 10.5 21 633-653 79-99 (149)
469 PF10255 Paf67: RNA polymerase 31.6 5.8E+02 0.012 26.1 11.3 174 115-296 123-318 (404)
470 KOG1839 Uncharacterized protei 31.1 7.5E+02 0.016 29.3 12.4 154 495-648 942-1122(1236)
471 PRK14962 DNA polymerase III su 31.0 6.5E+02 0.014 26.5 14.8 144 93-262 177-326 (472)
472 PRK08691 DNA polymerase III su 30.7 7.7E+02 0.017 27.4 12.1 48 500-549 179-227 (709)
473 PF12926 MOZART2: Mitotic-spin 30.3 2.4E+02 0.0052 21.2 7.5 42 241-282 29-70 (88)
474 cd07153 Fur_like Ferric uptake 30.3 1.4E+02 0.0031 23.7 5.5 47 120-166 6-52 (116)
475 PRK06645 DNA polymerase III su 30.3 4.5E+02 0.0099 27.9 10.3 103 93-218 188-290 (507)
476 COG5108 RPO41 Mitochondrial DN 30.1 2.7E+02 0.0059 29.9 8.2 91 525-618 33-131 (1117)
477 KOG0991 Replication factor C, 29.8 4.6E+02 0.0099 24.3 13.5 102 495-600 169-282 (333)
478 KOG1839 Uncharacterized protei 29.6 8.4E+02 0.018 29.0 12.5 131 118-248 936-1085(1236)
479 COG4259 Uncharacterized protei 29.5 2.7E+02 0.0058 21.6 6.8 46 131-176 54-99 (121)
480 PF10155 DUF2363: Uncharacteri 29.5 3.2E+02 0.0069 22.4 12.2 51 164-221 4-54 (126)
481 PF03745 DUF309: Domain of unk 29.4 2E+02 0.0043 20.0 5.6 47 566-612 10-61 (62)
482 KOG0403 Neoplastic transformat 29.2 6.4E+02 0.014 25.9 30.0 59 525-584 514-572 (645)
483 PRK11639 zinc uptake transcrip 29.2 3.8E+02 0.0082 23.3 8.1 59 583-642 19-77 (169)
484 PF09477 Type_III_YscG: Bacter 29.1 2.9E+02 0.0063 21.9 8.7 78 91-176 19-96 (116)
485 KOG0686 COP9 signalosome, subu 29.0 6.2E+02 0.013 25.6 14.7 16 604-619 318-333 (466)
486 smart00777 Mad3_BUB1_I Mad3/BU 28.9 3.3E+02 0.0071 22.3 9.5 42 608-649 81-123 (125)
487 KOG0292 Vesicle coat complex C 28.7 9E+02 0.02 27.4 24.4 105 566-670 1002-1130(1202)
488 PRK08691 DNA polymerase III su 28.5 8.1E+02 0.018 27.2 11.8 86 536-624 180-279 (709)
489 COG4003 Uncharacterized protei 28.5 2.2E+02 0.0048 20.9 5.2 23 633-655 39-61 (98)
490 KOG0545 Aryl-hydrocarbon recep 28.2 5E+02 0.011 24.3 10.7 58 595-653 235-292 (329)
491 COG5108 RPO41 Mitochondrial DN 27.6 4.8E+02 0.01 28.2 9.4 91 490-583 33-131 (1117)
492 KOG4279 Serine/threonine prote 27.6 8.7E+02 0.019 26.9 13.3 23 532-556 299-321 (1226)
493 PF13762 MNE1: Mitochondrial s 27.5 3.8E+02 0.0082 22.7 10.8 81 558-638 42-128 (145)
494 PF10475 DUF2450: Protein of u 27.2 3.7E+02 0.008 26.0 8.6 120 154-280 103-222 (291)
495 PF07064 RIC1: RIC1; InterPro 26.9 5.5E+02 0.012 24.3 16.2 154 487-653 84-248 (258)
496 PRK07003 DNA polymerase III su 26.8 9.6E+02 0.021 27.1 12.6 47 501-549 180-227 (830)
497 PF00244 14-3-3: 14-3-3 protei 26.8 5.2E+02 0.011 24.0 10.3 40 398-437 7-46 (236)
498 PRK14963 DNA polymerase III su 26.7 6.4E+02 0.014 26.8 10.7 33 142-176 190-222 (504)
499 COG2178 Predicted RNA-binding 26.5 4.7E+02 0.01 23.4 10.3 19 299-317 38-56 (204)
500 PF02847 MA3: MA3 domain; Int 26.2 3.1E+02 0.0068 21.6 6.8 23 489-511 6-28 (113)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.6e-74 Score=642.84 Aligned_cols=574 Identities=20% Similarity=0.255 Sum_probs=530.8
Q ss_pred HHHHhcCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 040136 84 LCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGG 163 (681)
Q Consensus 84 ~~~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 163 (681)
+...+...+..+.+..++..+.+ .+..++...++.++..|++.|+++.|.++|++|.+ ++..+|+.++.+|++.|
T Consensus 92 ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g 166 (857)
T PLN03077 92 LFRLCEWKRAVEEGSRVCSRALS-SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAG 166 (857)
T ss_pred HHHHHhhCCCHHHHHHHHHHHHH-cCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCC
Confidence 33444556778888888887654 45567777888888888888888888888888864 35568888888888888
Q ss_pred ChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 040136 164 VPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLL 243 (681)
Q Consensus 164 ~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 243 (681)
++++|+++|++|. ..|+.||..+|+.++.++...++...+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|
T Consensus 167 ~~~~A~~~f~~M~-~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf 245 (857)
T PLN03077 167 YFDEALCLYHRML-WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVF 245 (857)
T ss_pred CHHHHHHHHHHHH-HcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHH
Confidence 8888888888888 678888888888888888888888888888888888888888888999999999999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040136 244 RDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTP 323 (681)
Q Consensus 244 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 323 (681)
++|.. ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.|
T Consensus 246 ~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 321 (857)
T PLN03077 246 DRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321 (857)
T ss_pred hcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc
Confidence 99864 67899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 040136 324 DDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLC 403 (681)
Q Consensus 324 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~ 403 (681)
|..+|+.++.+|++.|++++|.++|++|..+|..+||.++.+|.+.|++++|++ +++.|...|+.||..||+.++.+|+
T Consensus 322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~-lf~~M~~~g~~Pd~~t~~~ll~a~~ 400 (857)
T PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALE-TYALMEQDNVSPDEITIASVLSACA 400 (857)
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHH-HHHHHHHhCCCCCceeHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc--------cccHHHHHHHHHH
Q 040136 404 KQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNT--------GDRIEEALGLYQD 475 (681)
Q Consensus 404 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------~~~~~~a~~~~~~ 475 (681)
+.|+++.|.++++.+.+.|+.|+..+|+.|+++|++.|++++|.++|++|.+.+..... .++.++|+.+|++
T Consensus 401 ~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~ 480 (857)
T PLN03077 401 CLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQ 480 (857)
T ss_pred ccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999876554332 7889999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 040136 476 MLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSS 555 (681)
Q Consensus 476 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 555 (681)
|.. ++.||..+|+.++.+|++.|+.+.+.+++..+.+.|..+|..++++|+++|+++|++++|..+|+.+ .||.
T Consensus 481 m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~ 554 (857)
T PLN03077 481 MLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDV 554 (857)
T ss_pred HHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCCh
Confidence 986 5899999999999999999999999999999999999999999999999999999999999999987 5799
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHH
Q 040136 556 ISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQ-AEGIYPDAVTYNTLISW 634 (681)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~ 634 (681)
.+|+.++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|+.++++
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~ 634 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDL 634 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 56999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCccc
Q 040136 635 HFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKEINME 677 (681)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 677 (681)
|.+.|++++|.+++++|. +.||..+|..|+.+|...|+.+
T Consensus 635 l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e 674 (857)
T PLN03077 635 LGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVE 674 (857)
T ss_pred HHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChH
Confidence 999999999999999994 7999999999999999888765
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.7e-72 Score=625.12 Aligned_cols=573 Identities=19% Similarity=0.237 Sum_probs=548.5
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 040136 81 PFQLCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYG 160 (681)
Q Consensus 81 ~~~~~~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (681)
...+...+...|++++|+.+|+.+. ..|++|+..+|..++..|.+.+.+..+.+++..+.+.+..++...++.|+..|+
T Consensus 54 ~n~~i~~l~~~g~~~~A~~l~~~m~-~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~ 132 (857)
T PLN03077 54 SNSQLRALCSHGQLEQALKLLESMQ-ELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFV 132 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH-hcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHH
Confidence 3445666777899999999999965 467889999999999999999999999999999999998889999999999999
Q ss_pred hCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHH
Q 040136 161 RGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSAC 240 (681)
Q Consensus 161 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 240 (681)
+.|+.+.|.++|++|. +||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..++++.+.
T Consensus 133 ~~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 133 RFGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred hCCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 9999999999999999 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040136 241 SLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRG 320 (681)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 320 (681)
+++..|.+.|+.||+.+|+++|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|...|
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999997 5789999999999999999999999999999999
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCC----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHH
Q 040136 321 FTPDDITYGVLMHGLCRTGRVDEARALLNKIPS----ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFN 396 (681)
Q Consensus 321 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 396 (681)
+.||..+|+.++.+|++.|+.+.|.+++..+.. +|..+||.|+.+|++.|++++|.+ +++.|. .||..+|+
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~-vf~~m~----~~d~~s~n 358 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK-VFSRME----TKDAVSWT 358 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHH-HHhhCC----CCCeeeHH
Confidence 999999999999999999999999999998876 899999999999999999999999 888886 47889999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc------------cc
Q 040136 397 ILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNT------------GD 464 (681)
Q Consensus 397 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------~~ 464 (681)
.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|..++. .+
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999999999999988765 78
Q ss_pred cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040136 465 RIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFE 544 (681)
Q Consensus 465 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 544 (681)
++++|.++|++|.+ +|..+|+++|.+|++.|+.++|+++|++|.. +++||..+|+.++.+|++.|+++.+.+++.
T Consensus 439 ~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~ 513 (857)
T PLN03077 439 CIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHA 513 (857)
T ss_pred CHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHH
Confidence 99999999999965 5889999999999999999999999999986 589999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040136 545 EMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD 624 (681)
Q Consensus 545 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 624 (681)
.+.+.|+.++..+++.++++|++.|++++|.++|+++ .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||
T Consensus 514 ~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd 588 (857)
T PLN03077 514 HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD 588 (857)
T ss_pred HHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999999987 58999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCcccc
Q 040136 625 AVTYNTLISWHFKEGLFDDAFLILHKGV-ANGFVPNDATWYILVRNLVKEINMES 678 (681)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~g~~~~~~~~~~ll~~~~~~g~~~~ 678 (681)
..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|+.+++.|.+.|+.++
T Consensus 589 ~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~e 643 (857)
T PLN03077 589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTE 643 (857)
T ss_pred cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHH
Confidence 9999999999999999999999999999 67999999999999999999998765
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.4e-69 Score=587.60 Aligned_cols=520 Identities=20% Similarity=0.268 Sum_probs=490.4
Q ss_pred CCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHH
Q 040136 111 CHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGI-ICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYN 189 (681)
Q Consensus 111 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 189 (681)
.++...|..+...+++.|++++|.++|++|.+.|+ +++...+..++..|.+.|..++|..+|+.|. .|+..+|+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-----~pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-----NPTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-----CCCHHHHH
Confidence 35677888888999999999999999999999985 4566677789999999999999999999998 59999999
Q ss_pred HHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 040136 190 VVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSN 269 (681)
Q Consensus 190 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 269 (681)
.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 040136 270 RVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLV--RGFTPDDITYGVLMHGLCRTGRVDEARAL 347 (681)
Q Consensus 270 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 347 (681)
++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 67899999999999999999999999999
Q ss_pred HhhcCC----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 040136 348 LNKIPS----ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGC 423 (681)
Q Consensus 348 ~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 423 (681)
|++|.+ ++..+|+.+|.+|++.|++++|.+ +++.|...|+.||..+|+.++.+|++.|++++|.++++.|.+.|+
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~-lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS-IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 999987 677999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 040136 424 EPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHE 503 (681)
Q Consensus 424 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 503 (681)
.|+..+|+.++.+|++.|++++|.++|++|.+.+ +.||..+|+.||.+|++.|++++
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g-----------------------~~PdvvtyN~LI~gy~k~G~~ee 737 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK-----------------------LRPTVSTMNALITALCEGNQLPK 737 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----------------------CCCCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999999999988887654 57899999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-----------
Q 040136 504 AHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCR----T----------- 568 (681)
Q Consensus 504 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~----------- 568 (681)
|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++..|.+ .
T Consensus 738 Alelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~ 817 (1060)
T PLN03218 738 ALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFD 817 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999876432 1
Q ss_pred --------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040136 569 --------RKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGL 640 (681)
Q Consensus 569 --------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 640 (681)
+..++|..+|++|.+.|+.||..||+.++.++++.+..+.+..+++.|...+..|+..+|+.+++++.+.
T Consensus 818 ~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~-- 895 (1060)
T PLN03218 818 SGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY-- 895 (1060)
T ss_pred ccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--
Confidence 2246799999999999999999999999998889999999999999998888899999999999998432
Q ss_pred hhHHHHHHHHHHHCCCCCCHH
Q 040136 641 FDDAFLILHKGVANGFVPNDA 661 (681)
Q Consensus 641 ~~~A~~~~~~~~~~g~~~~~~ 661 (681)
.++|..++++|.+.|+.|+..
T Consensus 896 ~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 896 DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hHHHHHHHHHHHHcCCCCCcc
Confidence 368999999999999999874
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-66 Score=566.45 Aligned_cols=512 Identities=16% Similarity=0.207 Sum_probs=480.7
Q ss_pred HHHHhcCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 040136 84 LCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGG 163 (681)
Q Consensus 84 ~~~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 163 (681)
+...+.+.|+++.|+++|+++....-.+++...+..++..|.+.|..++|..+++.|.. |+..+|+.++.+|++.|
T Consensus 376 ~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g 451 (1060)
T PLN03218 376 AYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQ 451 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCc
Confidence 44444567999999999999876555667888888899999999999999999999975 68999999999999999
Q ss_pred ChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 040136 164 VPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLL 243 (681)
Q Consensus 164 ~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 243 (681)
+++.|.++|+.|. ..|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|
T Consensus 452 ~~e~A~~lf~~M~-~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 452 DIDGALRVLRLVQ-EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred CHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 9999999999999 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040136 244 RDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMIL--MGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGF 321 (681)
Q Consensus 244 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~--~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 321 (681)
+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+
T Consensus 531 ~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi 610 (1060)
T PLN03218 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999986 67899999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHhhcCC----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 040136 322 TPDDITYGVLMHGLCRTGRVDEARALLNKIPS----ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNI 397 (681)
Q Consensus 322 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 397 (681)
.|+..+|+.++.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|+.++|.+ +++.|.+.|+.||..+|+.
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~-l~~eM~k~G~~pd~~tyns 689 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE-ILQDARKQGIKLGTVSYSS 689 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH-HHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999987 899999999999999999999999 9999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHH
Q 040136 398 LIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDML 477 (681)
Q Consensus 398 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 477 (681)
+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|...
T Consensus 690 LI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~--------------------- 748 (1060)
T PLN03218 690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL--------------------- 748 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---------------------
Confidence 99999999999999999999999999999999999999999999999999998888775
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cC-------------------
Q 040136 478 LEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCN----AG------------------- 534 (681)
Q Consensus 478 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g------------------- 534 (681)
|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ ++
T Consensus 749 --Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~ 826 (1060)
T PLN03218 749 --GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENK 826 (1060)
T ss_pred --CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccc
Confidence 46789999999999999999999999999999999999999999999876432 11
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040136 535 AVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFD 614 (681)
Q Consensus 535 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 614 (681)
..++|..+|++|++.|+.||..||+.++.+++..+..+.+..+++.|...+..|+..+|+++++++.+. .++|..+++
T Consensus 827 w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~ 904 (1060)
T PLN03218 827 WTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLE 904 (1060)
T ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHH
Confidence 236799999999999999999999999999989999999999999999888899999999999998543 478999999
Q ss_pred HHHHCCCCCCHH
Q 040136 615 KLQAEGIYPDAV 626 (681)
Q Consensus 615 ~~~~~~~~p~~~ 626 (681)
+|.+.|+.|+..
T Consensus 905 em~~~Gi~p~~~ 916 (1060)
T PLN03218 905 EAASLGVVPSVS 916 (1060)
T ss_pred HHHHcCCCCCcc
Confidence 999999999875
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-63 Score=542.57 Aligned_cols=473 Identities=20% Similarity=0.305 Sum_probs=451.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHH
Q 040136 148 RESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVM 227 (681)
Q Consensus 148 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 227 (681)
+...++.++..|.+.|++++|+++|+.|....++.||..+|+.++.++.+.++.+.|.+++..|.+.|+.||..+|+.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 34467888899999999999999999998445578999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 040136 228 KALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIH 307 (681)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 307 (681)
.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|+++|++|.+.|+.|+..+|+.++.++++.|..+
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 999999999999999999964 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 040136 308 EAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVG 387 (681)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 387 (681)
.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|..+|+++||.++.+|++.|+.++|++ +|+.|...|
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~-lf~~M~~~g 320 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALC-LYYEMRDSG 320 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHH-HHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHH
Q 040136 388 CIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIE 467 (681)
Q Consensus 388 ~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 467 (681)
+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+++|++.|++++|.++|++|.+
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~------------ 388 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR------------ 388 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC------------
Confidence 99999999999999999999999999999999999999999999999999999999999999988854
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040136 468 EALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMM 547 (681)
Q Consensus 468 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 547 (681)
||..+|++||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.
T Consensus 389 ---------------~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 389 ---------------KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred ---------------CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999998
Q ss_pred H-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H
Q 040136 548 R-KGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-A 625 (681)
Q Consensus 548 ~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~ 625 (681)
+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..+++++.+ +.|+ .
T Consensus 454 ~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~ 528 (697)
T PLN03081 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKL 528 (697)
T ss_pred HhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCC
Confidence 7 599999999999999999999999999999876 4789999999999999999999999999999976 4564 6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 040136 626 VTYNTLISWHFKEGLFDDAFLILHKGVANGFV 657 (681)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 657 (681)
.+|..|++.|.+.|++++|.+++++|.++|+.
T Consensus 529 ~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 529 NNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred cchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 79999999999999999999999999999874
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.3e-61 Score=524.54 Aligned_cols=507 Identities=18% Similarity=0.256 Sum_probs=444.8
Q ss_pred HHHHHHhcCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 040136 82 FQLCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGR 161 (681)
Q Consensus 82 ~~~~~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (681)
..+...+...+++++|+++|+|+....++.|+..+|..++.+|.+.++++.+.+++..|.+.|+.|+..+++.|+..|++
T Consensus 91 ~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k 170 (697)
T PLN03081 91 CSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVK 170 (697)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhc
Confidence 34455566789999999999998877778899999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 040136 162 GGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACS 241 (681)
Q Consensus 162 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 241 (681)
.|++++|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+
T Consensus 171 ~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 245 (697)
T PLN03081 171 CGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQ 245 (697)
T ss_pred CCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHH
Confidence 999999999999998 699999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040136 242 LLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGF 321 (681)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 321 (681)
++..+.+.|+.||..+|+++|.+|++.|++++|.++|++|. .+|..+|+.+|.+|++.|+.++|.++|++|.+.|+
T Consensus 246 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 246 LHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999996 56999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 040136 322 TPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHG 401 (681)
Q Consensus 322 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~ 401 (681)
.||..||+.++.+|++.|++++|.++ +..|.+.|+.||..+|+.++.+
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i--------------------------------~~~m~~~g~~~d~~~~~~Li~~ 369 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQA--------------------------------HAGLIRTGFPLDIVANTALVDL 369 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHH--------------------------------HHHHHHhCCCCCeeehHHHHHH
Confidence 99999999999988888888877774 5556677888999999999999
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCC
Q 040136 402 LCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGV 481 (681)
Q Consensus 402 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 481 (681)
|++.|++++|.++|++|. .||..+|+.++.+|++.|+.++|.++|++|.+. |+
T Consensus 370 y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-----------------------g~ 422 (697)
T PLN03081 370 YSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAE-----------------------GV 422 (697)
T ss_pred HHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------CC
Confidence 999999999999999886 468889999999999999998888888877765 45
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 040136 482 TANTVTYNTLIHAFLRRGSLHEAHKLVNDMLF-RGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNI 560 (681)
Q Consensus 482 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 560 (681)
.||..||+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| +..|+..+|+.
T Consensus 423 ~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~ 499 (697)
T PLN03081 423 APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAA 499 (697)
T ss_pred CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHH
Confidence 78999999999999999999999999999976 588999999999999999999999999988765 56789999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH------
Q 040136 561 LINGLCRTRKANTALEFLRDMIHRGLTP-DIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDA-VTYNTLI------ 632 (681)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~------ 632 (681)
++.+|+..|+++.|..+++++.+ ..| +..+|..|++.|++.|++++|.++++.|.+.|+.... .+|..+.
T Consensus 500 Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f 577 (697)
T PLN03081 500 LLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSF 577 (697)
T ss_pred HHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEE
Confidence 99999999999999999998875 345 4678999999999999999999999999998875332 2221110
Q ss_pred -HH---HH-hcCChhHHHHHHHHHHHCCCCCCHH
Q 040136 633 -SW---HF-KEGLFDDAFLILHKGVANGFVPNDA 661 (681)
Q Consensus 633 -~~---~~-~~g~~~~A~~~~~~~~~~g~~~~~~ 661 (681)
.. +- ...-++...++..+|.+.|+.||..
T Consensus 578 ~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 578 FSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred ccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 00 00 0011345566788888889988753
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.3e-34 Score=325.97 Aligned_cols=570 Identities=12% Similarity=0.044 Sum_probs=445.7
Q ss_pred cCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHH
Q 040136 89 RLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQA 168 (681)
Q Consensus 89 ~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 168 (681)
...|+++.|...|+.+....+ .+...+..+...+.+.|++++|...++.+.+.++ .+...+..+...+.+.|++++|
T Consensus 306 ~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A 382 (899)
T TIGR02917 306 YQLGNLEQAYQYLNQILKYAP--NSHQARRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKA 382 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 345667777777766655433 3445556666677777777777777777776653 3566777777777777888888
Q ss_pred HHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040136 169 TRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTK 248 (681)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 248 (681)
.++|+++. ... +.+...+..+...+...|++++|.+.|+++.+.+.. .......++..+.+.|++++|..+++.+..
T Consensus 383 ~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 459 (899)
T TIGR02917 383 AEYLAKAT-ELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEK 459 (899)
T ss_pred HHHHHHHH-hcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 87777776 222 345566667777777777888888887777765422 234455566777788888888888888876
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccH
Q 040136 249 HGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITY 328 (681)
Q Consensus 249 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 328 (681)
.. +++..++..+..++...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++...+ +.+..++
T Consensus 460 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 536 (899)
T TIGR02917 460 KQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAI 536 (899)
T ss_pred hC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHH
Confidence 53 5667788888888888888888888888887754 4456677778888888888888888888888764 3356677
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 040136 329 GVLMHGLCRTGRVDEARALLNKIPS---ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQ 405 (681)
Q Consensus 329 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 405 (681)
..+...+.+.|+.++|...++++.. .+...+..++..|...|++++|.. +++.+... .+.+...|..+...+...
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~-~~~~~~~~~~l~~~~~~~ 614 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALA-ILNEAADA-APDSPEAWLMLGRAQLAA 614 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHH-HHHHHHHc-CCCCHHHHHHHHHHHHHc
Confidence 8888888888999999888888755 455677788888899999999998 77777653 345677888888899999
Q ss_pred CChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc-----------cccHHHHHHHHH
Q 040136 406 RRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNT-----------GDRIEEALGLYQ 474 (681)
Q Consensus 406 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------~~~~~~a~~~~~ 474 (681)
|++++|...++.+.+.. +.+...+..+..++.+.|++++|...++++.+....... .++.++|..+++
T Consensus 615 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999888763 446677888888899999999999999988876543222 678899999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 040136 475 DMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPS 554 (681)
Q Consensus 475 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 554 (681)
.+....+ .+...+..+...+...|++++|.+.++.+...+ |+..++..++.++.+.|++++|...++++.+.. +.+
T Consensus 694 ~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~ 769 (899)
T TIGR02917 694 SLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PND 769 (899)
T ss_pred HHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 8887753 467778888889999999999999999988874 444677788899999999999999999998874 347
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISW 634 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 634 (681)
...+..++..|...|+.++|.+.|+++.+.. +.+..+++.+...+...|+ .+|+.+++++.+.. +-+..++..++..
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 846 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWL 846 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 7888999999999999999999999999863 4577889999999999999 88999999998852 3346677888999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcccc
Q 040136 635 HFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKEINMES 678 (681)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 678 (681)
+...|++++|.++++++++.+. .+..++..+...+.+.|+.++
T Consensus 847 ~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~ 889 (899)
T TIGR02917 847 LVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAE 889 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999753 388899999999999998765
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.6e-33 Score=320.81 Aligned_cols=551 Identities=13% Similarity=0.057 Sum_probs=477.6
Q ss_pred HHHHhcCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 040136 84 LCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGG 163 (681)
Q Consensus 84 ~~~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 163 (681)
+..++...|+++.|+..++.+....+ .+...+..+...+.+.|++++|.++|+++.+..+ .+...+..+...+...|
T Consensus 335 la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 411 (899)
T TIGR02917 335 LASIQLRLGRVDEAIATLSPALGLDP--DDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQG 411 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCC
Confidence 44455678999999999998876543 5677888899999999999999999999998764 46778889999999999
Q ss_pred ChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 040136 164 VPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLL 243 (681)
Q Consensus 164 ~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 243 (681)
++++|.+.|+++. ... +........++..+.+.|++++|..+++++.... +++..++..+...+...|++++|.+.|
T Consensus 412 ~~~~A~~~~~~a~-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 488 (899)
T TIGR02917 412 DPSEAIADLETAA-QLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAF 488 (899)
T ss_pred ChHHHHHHHHHHH-hhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999988 332 3344566778889999999999999999998863 446788999999999999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040136 244 RDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTP 323 (681)
Q Consensus 244 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 323 (681)
+++.+.. +.+...+..+...+...|++++|.+.++++.+.+ +.+..++..+...+.+.|+.++|..+++++...+ +.
T Consensus 489 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 565 (899)
T TIGR02917 489 EKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQ 565 (899)
T ss_pred HHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cc
Confidence 9998875 5567788889999999999999999999998765 5678889999999999999999999999998764 34
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHhhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 040136 324 DDITYGVLMHGLCRTGRVDEARALLNKIPS---ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIH 400 (681)
Q Consensus 324 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~ 400 (681)
+...+..++..|...|++++|..+++++.. .+...|..++.+|...|++++|+. .++.+.+.. +.+...+..+..
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~-~~~~~~~~~l~~ 643 (899)
T TIGR02917 566 EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVS-SFKKLLALQ-PDSALALLLLAD 643 (899)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhC-CCChHHHHHHHH
Confidence 566788899999999999999999998875 567889999999999999999999 777777643 346677888999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc-----------cccHHHH
Q 040136 401 GLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNT-----------GDRIEEA 469 (681)
Q Consensus 401 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------~~~~~~a 469 (681)
.+...|++++|...++.+.+.. +.+...+..++..+...|++++|..+++.+.+....... .++.++|
T Consensus 644 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 722 (899)
T TIGR02917 644 AYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAA 722 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999998763 446788999999999999999999999999887644332 6899999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 040136 470 LGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK 549 (681)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (681)
...++.+...++ +..++..++.++.+.|++++|.+.++.+.+.. |.+..++..+...|...|++++|...|+++.+.
T Consensus 723 ~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 723 IQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 999999988754 44777889999999999999999999999874 778899999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040136 550 GIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYN 629 (681)
Q Consensus 550 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 629 (681)
.. .+...++.++..+...|+ .+|+..++++.+.. +-+..++..+..++...|++++|..+++++++.+ +.+..++.
T Consensus 800 ~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~ 875 (899)
T TIGR02917 800 AP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRY 875 (899)
T ss_pred CC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHH
Confidence 53 478889999999999999 88999999999852 3356778889999999999999999999999975 34888999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 040136 630 TLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
.++.++.+.|++++|.+++++|++
T Consensus 876 ~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 876 HLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhC
Confidence 999999999999999999999863
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=2.7e-25 Score=254.12 Aligned_cols=554 Identities=12% Similarity=0.043 Sum_probs=370.8
Q ss_pred HHhcCCCChHHHHHHHHHhhhCCCCCCCHHH--------------HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHH
Q 040136 86 KLLRLPLDVDTSMEIFTWAGSQEGYCHTFDV--------------YYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESL 151 (681)
Q Consensus 86 ~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~--------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 151 (681)
++....|+.++|.+.++.+....|-.+.... .....+.+.+.|++++|.+.++.+.+.+++.....
T Consensus 70 ~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la 149 (1157)
T PRK11447 70 RLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLA 149 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHH
Confidence 3444678888888888887776653332211 12234467788888888888888887664322212
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCC--------------
Q 040136 152 FILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGIS-------------- 217 (681)
Q Consensus 152 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~-------------- 217 (681)
...........|+.++|++.|+++.... +.+...+..+...+...|++++|+..++++......
T Consensus 150 ~~y~~~~~~~~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~ 227 (1157)
T PRK11447 150 VEYWRLVAKLPAQRPEAINQLQRLNADY--PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKD 227 (1157)
T ss_pred HHHHHHHhhCCccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 2122222234588888888888887331 445667777888888888888888888888654210
Q ss_pred ----CCh-hhHHH----------------------------------HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH
Q 040136 218 ----PTV-YTFGV----------------------------------VMKALCMVNEVDSACSLLRDMTKHGCVPNSVVY 258 (681)
Q Consensus 218 ----p~~-~~~~~----------------------------------ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 258 (681)
+.. ..+.. ....+...|++++|...|++..+.. +.+..++
T Consensus 228 ~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~ 306 (1157)
T PRK11447 228 MPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEAL 306 (1157)
T ss_pred cCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 000 00110 0122345567777777777776654 4456666
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc
Q 040136 259 QTLIHALSKSNRVSEALMLLEEMILMGCTS-DVQTFN------------DVIHGLCKVNRIHEAAKLVDRMLVRGFTPDD 325 (681)
Q Consensus 259 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~-~~~~~~------------~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 325 (681)
..+..++.+.|++++|+..|++..+..... ....+. .....+.+.|++++|+..+++++... +.+.
T Consensus 307 ~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~ 385 (1157)
T PRK11447 307 GALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDS 385 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 777777777777777777777766543111 111111 12334556677777777777776652 2234
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHhhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--------CCHHH
Q 040136 326 ITYGVLMHGLCRTGRVDEARALLNKIPS---ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCI--------PDVFT 394 (681)
Q Consensus 326 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--------p~~~~ 394 (681)
..+..+..++...|++++|++.|+++.. .+...+..+...|. .++.++|+. +++.+...... .....
T Consensus 386 ~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~-~l~~l~~~~~~~~~~~~~~l~~~~ 463 (1157)
T PRK11447 386 YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALA-FIASLSASQRRSIDDIERSLQNDR 463 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHH-HHHhCCHHHHHHHHHHHHHhhhhH
Confidence 4556666777777777777777776654 33445555555553 345666666 44433221100 01122
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc-----------c
Q 040136 395 FNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNT-----------G 463 (681)
Q Consensus 395 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------~ 463 (681)
+..+...+...|++++|...+++..+.. +.+...+..+...|.+.|++++|...++++.+....... .
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~ 542 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGS 542 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhC
Confidence 3445566778899999999999988763 335667788888999999999999999998876443221 4
Q ss_pred ccHHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 040136 464 DRIEEALGLYQDMLLEGVTANT---------VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAG 534 (681)
Q Consensus 464 ~~~~~a~~~~~~~~~~~~~~~~---------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 534 (681)
++.++|+..++.+......++. ..+..+...+...|+.++|.++++. .|.+...+..+...+.+.|
T Consensus 543 ~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g 617 (1157)
T PRK11447 543 DRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRG 617 (1157)
T ss_pred CCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcC
Confidence 6677788877765433222221 1233456778899999999999872 3667778888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040136 535 AVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFD 614 (681)
Q Consensus 535 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 614 (681)
++++|+..|+++++... .+...+..++..|...|++++|++.++...+.. +.+...+..+..++...|++++|.++++
T Consensus 618 ~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 618 DYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999743 367888999999999999999999999888642 2345667778888999999999999999
Q ss_pred HHHHCCC--CC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 615 KLQAEGI--YP---DAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 615 ~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
+++...- .| +...+..+...+...|++++|.+.|++++.
T Consensus 696 ~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 696 RLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9987521 12 234666778889999999999999999974
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.2e-23 Score=240.66 Aligned_cols=573 Identities=13% Similarity=0.020 Sum_probs=400.1
Q ss_pred HhcCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHH--------------
Q 040136 87 LLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLF-------------- 152 (681)
Q Consensus 87 ~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------- 152 (681)
+-...++++.|.+.++.+....+ .++..+..++.++.+.|+.++|.+.++++.+..+. +....
T Consensus 37 ~~~~~~~~d~a~~~l~kl~~~~p--~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~~~ 113 (1157)
T PRK11447 37 LGEATHREDLVRQSLYRLELIDP--NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPEGR 113 (1157)
T ss_pred HHHhhCChHHHHHHHHHHHccCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCchh
Confidence 33468999999999999877655 56888888999999999999999999999998853 43332
Q ss_pred --HHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHh-HHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHH
Q 040136 153 --ILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRS-YNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKA 229 (681)
Q Consensus 153 --~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 229 (681)
..+.+.+.+.|++++|++.|+++. .. .+++... ...........|+.++|++.++++.+.. +-+...+..+...
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l-~~-~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~l 190 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLF-NG-APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALL 190 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHc-cC-CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344557889999999999999988 22 2444321 1111222234689999999999999975 2356778888999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChh---h-----------------HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 040136 230 LCMVNEVDSACSLLRDMTKHGCVPNSV---V-----------------YQTLIHALSKSNRVSEALMLLEEMILMGCTSD 289 (681)
Q Consensus 230 ~~~~g~~~~A~~~~~~~~~~~~~~~~~---~-----------------~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~ 289 (681)
+...|+.++|+..++++.... ..+.. . +...+..+-.......|...+.++......|+
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~-~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~ 269 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSP-AGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA 269 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCC-CchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc
Confidence 999999999999999987643 11111 1 11111111112223455555555544322333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCC--CCh---HHHH----
Q 040136 290 VQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPS--ANV---VLLN---- 360 (681)
Q Consensus 290 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~---- 360 (681)
... ......+...|++++|+..|++.++.. +.+...+..+..++.+.|++++|+..|++..+ ++. ..|.
T Consensus 270 ~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 270 FRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred hHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 221 234566778999999999999999863 23677889999999999999999999998776 221 1121
Q ss_pred --------HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHH
Q 040136 361 --------TVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTI 432 (681)
Q Consensus 361 --------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 432 (681)
.+...+.+.|++++|++ .++...... +.+...+..+...+...|++++|.+.|++..+.. +.+...+..
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~-~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~ 424 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAER-LYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRG 424 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 23456788999999999 777777654 3456777888999999999999999999999763 334556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC--------------------CCccccHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 040136 433 LVDGFCKEGQLEKANIIINEMLAKGLS--------------------LNTGDRIEEALGLYQDMLLEGVTANTVTYNTLI 492 (681)
Q Consensus 433 ll~~~~~~g~~~~A~~~~~~~~~~~~~--------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 492 (681)
+...|. .++.++|..+++.+...... ....++.++|+..+++..+..+. +...+..+.
T Consensus 425 L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA 502 (1157)
T PRK11447 425 LANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLA 502 (1157)
T ss_pred HHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 666664 45678887777654321100 01157788888888888876543 567777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----------------------
Q 040136 493 HAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK----------------------- 549 (681)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------------------- 549 (681)
..|.+.|++++|...++++.+.. |.+...+..+...+...++.++|...++.+...
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence 88888888888888888887653 334444433333344445555554444332110
Q ss_pred ----------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040136 550 ----------------GIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLF 613 (681)
Q Consensus 550 ----------------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 613 (681)
..+.+...+..+...+.+.|++++|++.+++.++.. +.+...+..++..+...|++++|++.+
T Consensus 582 ~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 012345566778888899999999999999998862 336778888999999999999999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCccc
Q 040136 614 DKLQAEGIYP-DAVTYNTLISWHFKEGLFDDAFLILHKGVANGF--VP---NDATWYILVRNLVKEINME 677 (681)
Q Consensus 614 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~~---~~~~~~~ll~~~~~~g~~~ 677 (681)
+.+.+. .| +..++..+..++...|++++|.+++++++...- .| +...+..+...+...|+.+
T Consensus 661 ~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~ 728 (1157)
T PRK11447 661 AKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQ 728 (1157)
T ss_pred HHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHH
Confidence 988874 44 455667788888899999999999999987421 11 1234445556666666654
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=7e-21 Score=207.72 Aligned_cols=543 Identities=13% Similarity=0.047 Sum_probs=374.4
Q ss_pred HhcCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChH
Q 040136 87 LLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPG 166 (681)
Q Consensus 87 ~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 166 (681)
.....|++++|+..|+.+....| .+..++..++.++...|++++|+..+++..+.++ .+...+..+. ..++.+
T Consensus 53 ~~~~~Gd~~~A~~~l~~Al~~dP--~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~La----~i~~~~ 125 (987)
T PRK09782 53 KAQKNNDEATAIREFEYIHQQVP--DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSLA----AIPVEV 125 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHHH----HhccCh
Confidence 34457999999999999988776 4588889999999999999999999999999875 3444444442 228999
Q ss_pred HHHHHHHHcHhhcCCCCCHHhHHHHHHH--------HHhcCCcCcHHHHHHHHHHCCCCCChhhHHHH-HHHHHhcCChh
Q 040136 167 QATRLLLDMKSVYGCQPTFRSYNVVLDV--------LVAGNCHKVAPNLFYDMLSKGISPTVYTFGVV-MKALCMVNEVD 237 (681)
Q Consensus 167 ~A~~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~g~~~ 237 (681)
+|..+++++.... +-+...+..+... |.+. ++|.+.++ .......|+..+.... .+.|.+.|+++
T Consensus 126 kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~ 199 (987)
T PRK09782 126 KSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWS 199 (987)
T ss_pred hHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHH
Confidence 9999999998432 3345555555444 5555 55555554 3333334445544444 89999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040136 238 SACSLLRDMTKHGCVPNSVVYQTLIHALSK-SNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRM 316 (681)
Q Consensus 238 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 316 (681)
+|++++.++.+.+ +.+......+..+|.. .++ +++..+++. ..+.+...+..++..+.+.|+.++|.++++++
T Consensus 200 ~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~ 273 (987)
T PRK09782 200 QADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIEN 273 (987)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 9999999999987 5556667778788887 466 777777553 23467888999999999999999999999887
Q ss_pred HHCCCC-CCcccH------------------------------HHHHHHHHhcCCHHHHHHHHhhcCC------------
Q 040136 317 LVRGFT-PDDITY------------------------------GVLMHGLCRTGRVDEARALLNKIPS------------ 353 (681)
Q Consensus 317 ~~~~~~-~~~~~~------------------------------~~l~~~~~~~g~~~~A~~~~~~~~~------------ 353 (681)
...-.. |+..++ ..++..+.+.++++.+.++..--+.
T Consensus 274 ~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 353 (987)
T PRK09782 274 KPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSV 353 (987)
T ss_pred cccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhcc
Confidence 543111 222211 2235666777778777766432221
Q ss_pred --------------------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-C-CCCCCHHHHHHHHHHHHhcCC---h
Q 040136 354 --------------------ANVVLLNTVINGYVISGRFDEAKAIFYDSMLS-V-GCIPDVFTFNILIHGLCKQRR---F 408 (681)
Q Consensus 354 --------------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-~~~p~~~~~~~ll~~~~~~~~---~ 408 (681)
.+......+....++.|+.++|.+ +++.... . ...++......++..|.+.+. .
T Consensus 354 ~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 432 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAAD-LLLQRYPFQGDARLSQTLMARLASLLESHPYLATP 432 (987)
T ss_pred ccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHH-HHHHhcCCCcccccCHHHHHHHHHHHHhCCcccch
Confidence 011122222333456788888888 5554443 1 122333444466777766655 2
Q ss_pred hHHHHH----------------------HHHHHhc-CC-Cc--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-
Q 040136 409 GSALEL----------------------VNAMAVK-GC-EP--NIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLN- 461 (681)
Q Consensus 409 ~~A~~~----------------------~~~~~~~-~~-~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~- 461 (681)
.++..+ ++..... +. ++ +...|..+..++.. ++.++|...+.+.....+...
T Consensus 433 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~ 511 (987)
T PRK09782 433 AKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQ 511 (987)
T ss_pred HHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHH
Confidence 222222 1111111 11 23 45667777777766 788888887777766543321
Q ss_pred ---------ccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 040136 462 ---------TGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCN 532 (681)
Q Consensus 462 ---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 532 (681)
..++.++|...++++... +|+...+..+..++.+.|+.++|...++..++.. +.+...+..+.....+
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHh
Confidence 157788888888887554 3344456667778888899999999998888764 4444444444445556
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040136 533 AGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNL 612 (681)
Q Consensus 533 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 612 (681)
.|++++|...++++++. .|+...+..+..++.+.|++++|+..+++.++.. +.+...++.+..++...|++++|+..
T Consensus 589 ~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 589 PGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 69999999999998875 4567788888888999999999999999988852 33566777888888889999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 040136 613 FDKLQAEGIYP-DAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPND 660 (681)
Q Consensus 613 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 660 (681)
++++.+. .| +...+..+..++...|++++|+..++++++ +.|+.
T Consensus 666 l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~ 710 (987)
T PRK09782 666 LERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQ 710 (987)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCC
Confidence 9998884 44 466788888889999999999999999987 45654
No 12
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.2e-21 Score=199.26 Aligned_cols=552 Identities=13% Similarity=0.066 Sum_probs=422.5
Q ss_pred HhcCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChH
Q 040136 87 LLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPG 166 (681)
Q Consensus 87 ~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 166 (681)
++....+.+.|...|..+.++.| ++...+..-+.+....|++..|..+|..+....+...+.....+..++.+.|+.+
T Consensus 139 l~~~~~~~~~A~a~F~~Vl~~sp--~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~ 216 (1018)
T KOG2002|consen 139 LLEGDKSMDDADAQFHFVLKQSP--DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSE 216 (1018)
T ss_pred hhcCCccHHHHHHHHHHHHhhCC--cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchh
Confidence 33344557999999999988876 6666666666777789999999999999888776556667777778889999999
Q ss_pred HHHHHHHHcHhhcCCCCCHHhHHHHHHHH---Hhc---CCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHH
Q 040136 167 QATRLLLDMKSVYGCQPTFRSYNVVLDVL---VAG---NCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSAC 240 (681)
Q Consensus 167 ~A~~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~---~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 240 (681)
.|+..|.+.. +.|+...++++... ... ..+..+++++...-... .-++...+.|.+.|.-.|++..++
T Consensus 217 ~a~~a~~ral-----qLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~ 290 (1018)
T KOG2002|consen 217 KALLAFERAL-----QLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVW 290 (1018)
T ss_pred hHHHHHHHHH-----hcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHH
Confidence 9999999998 34444444443322 222 33566777777766654 236788899999999999999999
Q ss_pred HHHHHHHhCCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040136 241 SLLRDMTKHGCV--PNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSD--VQTFNDVIHGLCKVNRIHEAAKLVDRM 316 (681)
Q Consensus 241 ~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~ 316 (681)
.+...+...... .-...|-.+.++|-..|++++|...|.+..... ++ +..+--+...+.+.|+++.+...|+.+
T Consensus 291 ~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv 368 (1018)
T KOG2002|consen 291 HLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKV 368 (1018)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHH
Confidence 999988875311 123457789999999999999999999888654 34 344556788999999999999999999
Q ss_pred HHCCCCCCcccHHHHHHHHHhcC----CHHHHHHHHhhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHH----HHHHh
Q 040136 317 LVRGFTPDDITYGVLMHGLCRTG----RVDEARALLNKIPS---ANVVLLNTVINGYVISGRFDEAKAIFY----DSMLS 385 (681)
Q Consensus 317 ~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~----~~~~~ 385 (681)
.+. .+.+..+...|...|+..+ ..+.|..++.+... .|...|-.+...+....-+.. +. ++ +.+..
T Consensus 369 ~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~-~~~~A~d~L~~ 445 (1018)
T KOG2002|consen 369 LKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LD-AYGNALDILES 445 (1018)
T ss_pred HHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HH-HHHHHHHHHHH
Confidence 987 2335677788888887775 56778888877766 566678888777766554443 44 33 23445
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc---CCCcCH------hhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 386 VGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVK---GCEPNI------VTYTILVDGFCKEGQLEKANIIINEMLAK 456 (681)
Q Consensus 386 ~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~---~~~~~~------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 456 (681)
.+..+.....|.+...+...|++..|...|...... ...++. .+--.+..++-..++++.|.+.|..+.+.
T Consensus 446 ~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 446 KGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred cCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 555577888999999999999999999999988765 122232 23334556667788999999999999887
Q ss_pred CCCCCc-----------cccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHH
Q 040136 457 GLSLNT-----------GDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRG-CPLDEITYN 524 (681)
Q Consensus 457 ~~~~~~-----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 524 (681)
.+.... .+...+|...+.+.....- .++..+..+...+.+...+..|.+-|+.+...- ..+|..+..
T Consensus 526 hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysli 604 (1018)
T KOG2002|consen 526 HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLI 604 (1018)
T ss_pred CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHH
Confidence 654433 4677888888888877543 366667777778889889988888776665542 236888888
Q ss_pred HHHHHHHH------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 040136 525 GLIKALCN------------AGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVT 592 (681)
Q Consensus 525 ~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 592 (681)
+|.+.|.+ .+..++|+++|.++++..+. |...-|.+.-+++..|++.+|..+|.+..+... -+..+
T Consensus 605 aLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv 682 (1018)
T KOG2002|consen 605 ALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDV 682 (1018)
T ss_pred HhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCce
Confidence 88886653 34578899999999987544 778888999999999999999999999998733 35567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040136 593 YNSLINGLCKMGCIQEALNLFDKLQAEGI-YPDAVTYNTLISWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
|-.+.++|..+|++-.|+++|+...+.-. .-+..+...|.+++...|.+.+|.+.+..+...
T Consensus 683 ~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 683 WLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 88999999999999999999999988722 335778899999999999999999999999874
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=1.1e-19 Score=198.30 Aligned_cols=526 Identities=12% Similarity=0.022 Sum_probs=365.7
Q ss_pred HHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCc
Q 040136 122 DKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCH 201 (681)
Q Consensus 122 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 201 (681)
..+...|++++|...|+++.+..+. +..++..|...|...|+.++|+..+++.. ... +.|...+..+ ..+ +++
T Consensus 52 ~~~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv-~ld-P~n~~~~~~L-a~i---~~~ 124 (987)
T PRK09782 52 LKAQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQL-KRH-PGDARLERSL-AAI---PVE 124 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcC-cccHHHHHHH-HHh---ccC
Confidence 3445569999999999999999875 58899999999999999999999999998 322 3344444443 333 899
Q ss_pred CcHHHHHHHHHHCCCCCChhhHHHHHHH--------HHhcCChhHHHHHHHHHHhCCCCCChhhHHHH-HHHHHhcCChh
Q 040136 202 KVAPNLFYDMLSKGISPTVYTFGVVMKA--------LCMVNEVDSACSLLRDMTKHGCVPNSVVYQTL-IHALSKSNRVS 272 (681)
Q Consensus 202 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~ 272 (681)
++|..+++++...... +..++..+... |.+. ++|.+.++ .......|+..+.... .+.|.+.|+++
T Consensus 125 ~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~ 199 (987)
T PRK09782 125 VKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWS 199 (987)
T ss_pred hhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHH
Confidence 9999999999998532 45555555554 5444 55555555 3333323345544444 89999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhc
Q 040136 273 EALMLLEEMILMGCTSDVQTFNDVIHGLCK-VNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKI 351 (681)
Q Consensus 273 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 351 (681)
+|+++++++.+.+ +.+......|...|.. .++ +++..+++. ...-+......++..|.+.|+.++|..+++++
T Consensus 200 ~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~ 273 (987)
T PRK09782 200 QADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIEN 273 (987)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 9999999999987 4456667777778877 466 777777553 23357788899999999999999999999988
Q ss_pred CC-----CChHHH------------------------------HHHHHHHHhcCCHHHHHHHHHH---------------
Q 040136 352 PS-----ANVVLL------------------------------NTVINGYVISGRFDEAKAIFYD--------------- 381 (681)
Q Consensus 352 ~~-----~~~~~~------------------------------~~l~~~~~~~g~~~~a~~~~~~--------------- 381 (681)
.. +...+| -.++..+.+.++++-+.+ +..
T Consensus 274 ~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~~~~ 352 (987)
T PRK09782 274 KPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQK-LLATLPANEMLEERYAVS 352 (987)
T ss_pred cccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHH-HhcCCCcchHHHHHHhhc
Confidence 66 111111 122455666666665554 211
Q ss_pred --------------HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-C-CCcCHhhHHHHHHHHHhcCC---
Q 040136 382 --------------SMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVK-G-CEPNIVTYTILVDGFCKEGQ--- 442 (681)
Q Consensus 382 --------------~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~ll~~~~~~g~--- 442 (681)
.|... .+-+......+.-...+.|+.++|.++++..... + -..+.....-++..|.+.+.
T Consensus 353 ~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 431 (987)
T PRK09782 353 VATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLAT 431 (987)
T ss_pred cccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccc
Confidence 00000 0012222222233345677788888888777652 1 12234445567777777665
Q ss_pred HHHHHHH----------------------HHHHHHC-CCCCC--c------------cccHHHHHHHHHHHHhcCCCCCH
Q 040136 443 LEKANII----------------------INEMLAK-GLSLN--T------------GDRIEEALGLYQDMLLEGVTANT 485 (681)
Q Consensus 443 ~~~A~~~----------------------~~~~~~~-~~~~~--~------------~~~~~~a~~~~~~~~~~~~~~~~ 485 (681)
..++..+ +...... +..+. . .+..++|+..+.+..... |+.
T Consensus 432 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~--Pd~ 509 (987)
T PRK09782 432 PAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQ--PDA 509 (987)
T ss_pred hHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhC--Cch
Confidence 3333222 1111111 11111 1 345567888777776653 454
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 486 VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGL 565 (681)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 565 (681)
.....+...+...|++++|...++++... +|+...+..+..++.+.|+.++|...++++++.+. .+...+..+....
T Consensus 510 ~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l 586 (987)
T PRK09782 510 WQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQR 586 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHH
Confidence 44444555567899999999999997665 45555667778888999999999999999988642 2333344444455
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHH
Q 040136 566 CRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGLFDDA 644 (681)
Q Consensus 566 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 644 (681)
...|++++|...+++.++. .|+...+..+..++.+.|++++|+..++++.+. .|+ ...+..+..++...|++++|
T Consensus 587 ~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 587 YIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 5669999999999999984 577888999999999999999999999999995 554 66778888899999999999
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCcccc
Q 040136 645 FLILHKGVANGFVP-NDATWYILVRNLVKEINMES 678 (681)
Q Consensus 645 ~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~g~~~~ 678 (681)
+..++++++. .| +...+..+..++...|+.++
T Consensus 663 i~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 663 REMLERAHKG--LPDDPALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 9999999984 45 46778889999999998764
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=1.7e-21 Score=188.11 Aligned_cols=440 Identities=17% Similarity=0.136 Sum_probs=313.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 040136 154 LIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMV 233 (681)
Q Consensus 154 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 233 (681)
.|..-.-+.|++.+|++.-..+-++. +.+....-.+-..+.+..+.+.....-...++.. +.-..+|..+.+.+-..
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 34444445566666655544433110 1111222222233444444444443333333332 12356777777777777
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHH
Q 040136 234 NEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFND-VIHGLCKVNRIHEAAKL 312 (681)
Q Consensus 234 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~ 312 (681)
|+++.|+.+++.+.+.. +..+..|..+..++...|+.+.|.+.|.+.++. .|+.....+ +...+-..|++++|...
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 77777777777777765 445677777777777777777777777777764 355443333 33334456777777777
Q ss_pred HHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 040136 313 VDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSAN---VVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCI 389 (681)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 389 (681)
+.+.++... -=...|..|.-.+...|+...|+..|++....| ...|-.|...|-..+.+++|+. .|...... .
T Consensus 207 YlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs-~Y~rAl~l--r 282 (966)
T KOG4626|consen 207 YLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVS-CYLRALNL--R 282 (966)
T ss_pred HHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHH-HHHHHHhc--C
Confidence 777766521 124567777777777788888888777776633 3467777778888888888888 44444432 3
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHH
Q 040136 390 P-DVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPN-IVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIE 467 (681)
Q Consensus 390 p-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 467 (681)
| ....+..+...|...|.++.|+..+++.++. .|+ ...|+.|..++-..|+..+|...+++.+...
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~---------- 350 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC---------- 350 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC----------
Confidence 4 3566777777888999999999999999886 444 6789999999999999999999998888763
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040136 468 EALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMM 547 (681)
Q Consensus 468 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 547 (681)
+......+.|...|...|.+++|..+|....+. .|.-....+.|...|-+.|++++|+..|++++
T Consensus 351 --------------p~hadam~NLgni~~E~~~~e~A~~ly~~al~v-~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 351 --------------PNHADAMNNLGNIYREQGKIEEATRLYLKALEV-FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred --------------CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh-ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 225677889999999999999999999999886 34456788899999999999999999999999
Q ss_pred HCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-
Q 040136 548 RKGIKPS-SISCNILINGLCRTRKANTALEFLRDMIHRGLTPD-IVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD- 624 (681)
Q Consensus 548 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~- 624 (681)
+ +.|+ ...|+.+...|-..|+...|.+.+.+.+. +.|. ....+.|...|..+|++.+|++-+++..+ ++||
T Consensus 416 r--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 416 R--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred h--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 8 5666 47899999999999999999999999998 4554 46788999999999999999999999998 6887
Q ss_pred HHHHHHHHHHHH
Q 040136 625 AVTYNTLISWHF 636 (681)
Q Consensus 625 ~~~~~~l~~~~~ 636 (681)
...|..++.++-
T Consensus 490 pdA~cNllh~lq 501 (966)
T KOG4626|consen 490 PDAYCNLLHCLQ 501 (966)
T ss_pred chhhhHHHHHHH
Confidence 445666665543
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=1.5e-20 Score=181.62 Aligned_cols=377 Identities=15% Similarity=0.136 Sum_probs=219.3
Q ss_pred HhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH-HHHHHH
Q 040136 186 RSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVY-QTLIHA 264 (681)
Q Consensus 186 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~ 264 (681)
.+|.-+...+-..|++++|+.+++.+++.... ....|..+..++...|+.+.|.+.|.+..+.+ |+.... +.+...
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnL 193 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHH
Confidence 34444444444445555555555444443211 23444444444444455555554444444432 222221 222223
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCCHHH
Q 040136 265 LSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPD-DITYGVLMHGLCRTGRVDE 343 (681)
Q Consensus 265 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 343 (681)
+-..|+.++|...+.+..+.. +--...|+.|...+-.+|+...|++.|++.++. .|+ ...|-.|...|...+.+++
T Consensus 194 lka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchH
Confidence 333444555544444444321 112334444444444455555555555554433 222 2234444455555555555
Q ss_pred HHHHHhhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 344 ARALLNKIPS---ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPD-VFTFNILIHGLCKQRRFGSALELVNAMA 419 (681)
Q Consensus 344 A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 419 (681)
|...|.+... ...+++..+...|...|..+-|+. .|+...+. .|+ ...|+.+..++-..|++.+|.+.+.+.+
T Consensus 271 Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~-~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 271 AVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAID-TYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHH-HHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 5555444333 223344444455555555555555 44444433 233 4567778888888888888888887777
Q ss_pred hcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 040136 420 VKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRG 499 (681)
Q Consensus 420 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 499 (681)
... +.-....+.|...|...|.++.|..+|....+-. +--....+.|...|-+.|
T Consensus 348 ~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~------------------------p~~aaa~nNLa~i~kqqg 402 (966)
T KOG4626|consen 348 RLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF------------------------PEFAAAHNNLASIYKQQG 402 (966)
T ss_pred HhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC------------------------hhhhhhhhhHHHHHHhcc
Confidence 652 2235567777888888888888877777666542 112355677888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 040136 500 SLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPS-SISCNILINGLCRTRKANTALEFL 578 (681)
Q Consensus 500 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 578 (681)
++++|+..|++.+... |.-...|+.+...|-..|+++.|.+.+.+++.. .|. ....+.|...|...|+..+|++-+
T Consensus 403 nl~~Ai~~YkealrI~-P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 403 NLDDAIMCYKEALRIK-PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred cHHHHHHHHHHHHhcC-chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 8888888888888762 445667888888888889999999988888875 343 467788888888999999999999
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHHH
Q 040136 579 RDMIHRGLTPDI-VTYNSLINGLC 601 (681)
Q Consensus 579 ~~~~~~~~~p~~-~~~~~l~~~~~ 601 (681)
++.+. ++||. ..|..++.++-
T Consensus 480 ~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 480 RTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHc--cCCCCchhhhHHHHHHH
Confidence 88887 45653 44555555443
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=8e-19 Score=188.86 Aligned_cols=426 Identities=12% Similarity=0.046 Sum_probs=253.6
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 040136 189 NVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKS 268 (681)
Q Consensus 189 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 268 (681)
......+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|.+.++...+.+ +.+..+|..+..+|...
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 34455566677777777777776654 3555666667777777777777777777777654 44556667777777777
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 040136 269 NRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALL 348 (681)
Q Consensus 269 ~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 348 (681)
|++++|+.-|......+. .+......++..+.. ..+........+.. +++...+..+.. |......+.+..-+
T Consensus 208 g~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 208 GKYADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGL 280 (615)
T ss_pred CCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhh
Confidence 777777766665544321 111111111111111 12222222222221 112222222222 21111111111111
Q ss_pred hhcCCCCh---HHHHHHHHH---HHhcCCHHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040136 349 NKIPSANV---VLLNTVING---YVISGRFDEAKAIFYDSMLSVG-CIP-DVFTFNILIHGLCKQRRFGSALELVNAMAV 420 (681)
Q Consensus 349 ~~~~~~~~---~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~-~~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 420 (681)
......+. ..+..+... ....+++++|.+ .++.....+ ..| ....+..+...+...|++++|...+++..+
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~-~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAAR-AFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHH-HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11111111 111111111 122366777777 666665543 222 345566667777778888888888888776
Q ss_pred cCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 040136 421 KGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGS 500 (681)
Q Consensus 421 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 500 (681)
.. +.....|..+...+...|++++|...|+++++.. +.+...|..+...+...|+
T Consensus 360 l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------------------------p~~~~~~~~lg~~~~~~g~ 414 (615)
T TIGR00990 360 LD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN------------------------SEDPDIYYHRAQLHFIKGE 414 (615)
T ss_pred cC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------CCCHHHHHHHHHHHHHcCC
Confidence 52 2235567777777788888888888887776653 2256677777888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040136 501 LHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRD 580 (681)
Q Consensus 501 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 580 (681)
+++|...|++.++.. |.+...+..+..++.+.|++++|+..|+++++.. +.+...++.+...+...|++++|++.|++
T Consensus 415 ~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 415 FAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred HHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 888888888887763 5566777777788888888888888888887753 23567777788888888888888888888
Q ss_pred HHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 581 MIHRGLTPDI------VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 581 ~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
.++.....+. ..++..+..+...|++++|.++++++.+. .|+ ...+..++..+...|++++|.+.|+++.+
T Consensus 493 Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 493 AIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7764211111 11122222333468888888888887774 344 44677788888888888888888888876
Q ss_pred C
Q 040136 654 N 654 (681)
Q Consensus 654 ~ 654 (681)
.
T Consensus 571 l 571 (615)
T TIGR00990 571 L 571 (615)
T ss_pred H
Confidence 3
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.5e-18 Score=175.32 Aligned_cols=570 Identities=15% Similarity=0.068 Sum_probs=404.3
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHc
Q 040136 96 TSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDM 175 (681)
Q Consensus 96 ~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 175 (681)
.|.-+|+.+..-.-..+....+...........+.+.|.+.|..+.+..++ +.-.+..-.......|++..|+.+|..+
T Consensus 112 ~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~-Nil~LlGkA~i~ynkkdY~~al~yyk~a 190 (1018)
T KOG2002|consen 112 KATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPD-NILALLGKARIAYNKKDYRGALKYYKKA 190 (1018)
T ss_pred HHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 444555544333222333333333332222223358999999999988753 4444444444455678999999999995
Q ss_pred Hh-hcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---CChhHHHHHHHHHHhCCC
Q 040136 176 KS-VYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMV---NEVDSACSLLRDMTKHGC 251 (681)
Q Consensus 176 ~~-~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~~~~A~~~~~~~~~~~~ 251 (681)
.. ...+++|+.. .+...+++.|+.+.|+..|.+.++.+. -++.++..|.-.-... ..+..+..++...-..+
T Consensus 191 l~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n- 266 (1018)
T KOG2002|consen 191 LRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN- 266 (1018)
T ss_pred HhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-
Confidence 41 3444566542 333566799999999999999999753 2344444443333233 34556777777766654
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHH
Q 040136 252 VPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGC--TSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYG 329 (681)
Q Consensus 252 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 329 (681)
+-|+.+.+.|.+.|...|++..+..+...+..... ..-...|-.+.+++...|++++|..+|.+..+....--...+.
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 56889999999999999999999999999886431 1223457788999999999999999999888763221133455
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC---CChHHHHHHHHHHHhcC----CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 040136 330 VLMHGLCRTGRVDEARALLNKIPS---ANVVLLNTVINGYVISG----RFDEAKAIFYDSMLSVGCIPDVFTFNILIHGL 402 (681)
Q Consensus 330 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~ 402 (681)
-+.+.|.+.|+++.+...|+++.. .+..+...|...|...+ ..+.|.. +.....+.. +.|...|-.+...+
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~-~l~K~~~~~-~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASN-VLGKVLEQT-PVDSEAWLELAQLL 424 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHH-HHHHHHhcc-cccHHHHHHHHHHH
Confidence 688999999999999999999877 45667777788887775 4566666 444444332 44777787777666
Q ss_pred HhcCChhHHHHHHHHHH----hcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCCc-------------
Q 040136 403 CKQRRFGSALELVNAMA----VKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGL---SLNT------------- 462 (681)
Q Consensus 403 ~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~~~------------- 462 (681)
....-+ .++..|.... ..+..+.+...|.+...+...|+++.|...|......-. ..+.
T Consensus 425 e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 EQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 654443 3366665543 445567788999999999999999999999999877611 1111
Q ss_pred -----cccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 040136 463 -----GDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVD 537 (681)
Q Consensus 463 -----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 537 (681)
.++.+.|.+.|..+....+. =+..|..++-.-...+...+|...++...... ..++..+..++..+.+...+.
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhc
Confidence 45667777888888876422 22333333322233467889999999988764 567778888888999988999
Q ss_pred HHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040136 538 KGLGLFEEMMRK-GIKPSSISCNILINGLCRT------------RKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMG 604 (681)
Q Consensus 538 ~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 604 (681)
.|..-|..+.+. ...+|..+.-.|.+.|... +..++|+++|.+.+... +-|...-|.+.-+++..|
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhcc
Confidence 999888877765 2236777777777766542 45788999999998863 447778888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCccc
Q 040136 605 CIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANG-FVPNDATWYILVRNLVKEINME 677 (681)
Q Consensus 605 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~g~~~ 677 (681)
++.+|..+|.+..+.. .-+..+|..+..+|...|+|-.|.+.|+...+.- -..+..+...|.+++++.|...
T Consensus 661 ~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ 733 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQ 733 (1018)
T ss_pred CchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHH
Confidence 9999999999999873 3356788899999999999999999999999763 3446788889999999988743
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=2.7e-20 Score=190.39 Aligned_cols=278 Identities=18% Similarity=0.153 Sum_probs=209.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHH
Q 040136 358 LLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPD---VFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILV 434 (681)
Q Consensus 358 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 434 (681)
++..+...+...|++++|.. +++.+...+..++ ...+..+...|.+.|+++.|..+|+++.+.. +.+..++..++
T Consensus 71 ~~~~la~~~~~~g~~~~A~~-~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la 148 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIR-IHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLL 148 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 34444444444555555555 4444444322111 2456677788888888888888888887652 44667788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040136 435 DGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFR 514 (681)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 514 (681)
..+.+.|++++|...++.+.+.+..... ......+..+...+.+.|++++|...++++.+.
T Consensus 149 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 209 (389)
T PRK11788 149 EIYQQEKDWQKAIDVAERLEKLGGDSLR-------------------VEIAHFYCELAQQALARGDLDAARALLKKALAA 209 (389)
T ss_pred HHHHHhchHHHHHHHHHHHHHhcCCcch-------------------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH
Confidence 8888888888888888887765321100 001224566777888999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040136 515 GCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYN 594 (681)
Q Consensus 515 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 594 (681)
. +.+...+..+...+.+.|++++|..+|+++.+.+......+++.++.+|...|++++|.+.++++.+. .|+...+.
T Consensus 210 ~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~ 286 (389)
T PRK11788 210 D-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLL 286 (389)
T ss_pred C-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHH
Confidence 4 55677888888999999999999999999998643333467888999999999999999999999885 56766778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHH
Q 040136 595 SLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFK---EGLFDDAFLILHKGVANGFVPNDA 661 (681)
Q Consensus 595 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~~~~~ 661 (681)
.++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..++++|+++++.|++.
T Consensus 287 ~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 287 ALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 8999999999999999999999884 7898889888887764 568999999999999988777765
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=1.3e-17 Score=179.54 Aligned_cols=426 Identities=12% Similarity=-0.025 Sum_probs=281.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 040136 152 FILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALC 231 (681)
Q Consensus 152 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 231 (681)
+......|.+.|++++|+..|++... ..|+...|..+..+|.+.|++++|+..+...++.+. .+...+..+..++.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 44566677788888888888887762 256677777777788888888888888888877642 24567777788888
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040136 232 MVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAK 311 (681)
Q Consensus 232 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 311 (681)
..|++++|...|..+...+- .+......++..+.. ..+.....+..+.. +++...+..+.. +...........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchh
Confidence 88888888877766655431 111111112211111 12222222222221 122222222211 211111111111
Q ss_pred HHHHHHHCCCCCC-cccHHHHHHHH---HhcCCHHHHHHHHhhcCC------CChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040136 312 LVDRMLVRGFTPD-DITYGVLMHGL---CRTGRVDEARALLNKIPS------ANVVLLNTVINGYVISGRFDEAKAIFYD 381 (681)
Q Consensus 312 ~~~~~~~~~~~~~-~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 381 (681)
-+....+ ..++ ...+..+...+ ...+++++|.+.|++... .....|+.+...+...|++++|+. .++
T Consensus 279 ~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~-~~~ 355 (615)
T TIGR00990 279 GLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALA-DLS 355 (615)
T ss_pred hhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHH-HHH
Confidence 1111111 1111 11111111111 234677888888877654 234467777888888899999988 666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040136 382 SMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLN 461 (681)
Q Consensus 382 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 461 (681)
...... +-+...|..+...+...|++++|...++...+.. +.+..+|..+...+...|++++|...|++.++..
T Consensus 356 kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~---- 429 (615)
T TIGR00990 356 KSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD---- 429 (615)
T ss_pred HHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----
Confidence 666542 2245677888888899999999999999988763 4467788889999999999999999999888763
Q ss_pred ccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040136 462 TGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLG 541 (681)
Q Consensus 462 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 541 (681)
+.+...+..+..++.+.|++++|+..+++.++. .|.+...++.+...+...|++++|+.
T Consensus 430 --------------------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 430 --------------------PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred --------------------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHH
Confidence 235677788888999999999999999998876 36678889999999999999999999
Q ss_pred HHHHHHHCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040136 542 LFEEMMRKGIKPSSI------SCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDK 615 (681)
Q Consensus 542 ~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 615 (681)
.|+++++.....+.. .++..+..+...|++++|.+++++.++.. +.+...+..+..++.+.|++++|+..|++
T Consensus 489 ~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 489 KFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999998863221111 12222233445699999999999988753 23456788899999999999999999999
Q ss_pred HHHC
Q 040136 616 LQAE 619 (681)
Q Consensus 616 ~~~~ 619 (681)
+.+.
T Consensus 568 A~~l 571 (615)
T TIGR00990 568 AAEL 571 (615)
T ss_pred HHHH
Confidence 9875
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=3.1e-19 Score=182.51 Aligned_cols=301 Identities=15% Similarity=0.125 Sum_probs=176.6
Q ss_pred HHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCC
Q 040136 194 VLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPN---SVVYQTLIHALSKSNR 270 (681)
Q Consensus 194 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~ 270 (681)
.+...|++++|...|.++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34455666666666666666531 2344566666666677777777777766665431111 2345666677777777
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHhcCCHHHHHH
Q 040136 271 VSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDD----ITYGVLMHGLCRTGRVDEARA 346 (681)
Q Consensus 271 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~ 346 (681)
+++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~------------ 189 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ------------ 189 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH------------
Confidence 777777777776542 345566677777777777777777777777654322111 012223333
Q ss_pred HHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcC
Q 040136 347 LLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPN 426 (681)
Q Consensus 347 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~ 426 (681)
+.+.|+.++|.. .++.+.+.. +.+...+..+...+.+.|++++|.++++++.+.+....
T Consensus 190 -------------------~~~~~~~~~A~~-~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 248 (389)
T PRK11788 190 -------------------ALARGDLDAARA-LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL 248 (389)
T ss_pred -------------------HHhCCCHHHHHH-HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence 334444444444 333333322 12344555556666666666666666666665421212
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040136 427 IVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHK 506 (681)
Q Consensus 427 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 506 (681)
..++..++.+|...|++++|...++.+.+. .|+...+..++..+.+.|++++|..
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-------------------------~p~~~~~~~la~~~~~~g~~~~A~~ 303 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEE-------------------------YPGADLLLALAQLLEEQEGPEAAQA 303 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------------CCCchHHHHHHHHHHHhCCHHHHHH
Confidence 345566666777777777777777666554 2344445666677777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHH
Q 040136 507 LVNDMLFRGCPLDEITYNGLIKALCN---AGAVDKGLGLFEEMMRKGIKPSSI 556 (681)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~ 556 (681)
+++++.+. .|+...++.++..+.. .|+.+++..+++++.++++.|++.
T Consensus 304 ~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 304 LLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 77776665 4566666666666554 446777777777777665555544
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=1.1e-17 Score=179.06 Aligned_cols=360 Identities=13% Similarity=0.071 Sum_probs=187.1
Q ss_pred HHhcCCcCcHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 040136 195 LVAGNCHKVAPNLFYDMLSKG--ISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVS 272 (681)
Q Consensus 195 ~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 272 (681)
+.++.+++...-+|....+.. -.-+..-...++..+.+.|+.++|..+++...... +-+...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHH
Confidence 344555555554444433220 01122233344555556666666666666665543 333444445555555566666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcC
Q 040136 273 EALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIP 352 (681)
Q Consensus 273 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 352 (681)
+|...++++.... +.+...+..+...+...|++++|...++++.... +.+...+..+..++...|++++|...+++
T Consensus 94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~-- 169 (656)
T PRK15174 94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLART-- 169 (656)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHH--
Confidence 6666666666543 3344555555566666666666666666665431 11233444455555555555555554443
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHH
Q 040136 353 SANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTI 432 (681)
Q Consensus 353 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 432 (681)
+...... +...+..+ ..+...|++++|...++.+......++...+..
T Consensus 170 ------------------------------~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~ 217 (656)
T PRK15174 170 ------------------------------QAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGL 217 (656)
T ss_pred ------------------------------HHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 3322211 12222222 234555666666666655554422222333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHH
Q 040136 433 LVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHE----AHKLV 508 (681)
Q Consensus 433 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~ 508 (681)
+...+.+.|++++|...++++.... +.+...+..+...+...|++++ |...+
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~------------------------p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARG------------------------LDGAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC------------------------CCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 4445555666666666655555432 1244555556666666666654 56666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040136 509 NDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTP 588 (681)
Q Consensus 509 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 588 (681)
+++.+.. |.+..++..+...+...|++++|...++++.+.... +...+..+..++...|++++|++.++++.+. .|
T Consensus 274 ~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P 349 (656)
T PRK15174 274 RHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KG 349 (656)
T ss_pred HHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cc
Confidence 6666552 445556666666666666666666666666654322 3444555666666666666666666666653 23
Q ss_pred CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 589 DIV-TYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 589 ~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
+.. .+..+..++...|+.++|+..|+++.+.
T Consensus 350 ~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 350 VTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 332 2223345556666666666666666653
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=3.9e-17 Score=174.96 Aligned_cols=358 Identities=13% Similarity=0.045 Sum_probs=249.7
Q ss_pred HHhCCChHHHHHHHHHcHhhcCCCC-CHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChh
Q 040136 159 YGRGGVPGQATRLLLDMKSVYGCQP-TFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVD 237 (681)
Q Consensus 159 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 237 (681)
+.++.+++..--+|....+....+. +......++..+.+.|++++|..+++..+..... +......++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence 3466666665556655543221111 2233455677888999999999999999987544 4455666667777899999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 238 SACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRML 317 (681)
Q Consensus 238 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 317 (681)
+|...++++.... |.+...+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|...++.+.
T Consensus 94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 9999999999986 6667889999999999999999999999999863 4567788889999999999999999999887
Q ss_pred HCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH
Q 040136 318 VRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSA----NVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVF 393 (681)
Q Consensus 318 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 393 (681)
..... +...+..+ ..+...|++++|...++.+... +...+..+...+...|++++|+. .++...... +.+..
T Consensus 172 ~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~-~~~~al~~~-p~~~~ 247 (656)
T PRK15174 172 QEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQ-TGESALARG-LDGAA 247 (656)
T ss_pred HhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHH-HHHHHHhcC-CCCHH
Confidence 65332 22233333 3477888999998888776542 22334445566777777777777 556555543 23455
Q ss_pred HHHHHHHHHHhcCChhH----HHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHH
Q 040136 394 TFNILIHGLCKQRRFGS----ALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEA 469 (681)
Q Consensus 394 ~~~~ll~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a 469 (681)
.+..+...+...|++++ |...++...+.. +.+...+..+...+.+.|++++|...++++....
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~------------ 314 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH------------ 314 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------
Confidence 66667777777777764 677777776652 3355667777777777777777777777766642
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 040136 470 LGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK 549 (681)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (681)
+.+...+..+..++.+.|++++|...++.+...+ |.+...+..+..++...|+.++|...|+++.+.
T Consensus 315 ------------P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 315 ------------PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred ------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 1245556666777777777777777777776652 223333444456667777777777777777765
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=2.5e-16 Score=172.64 Aligned_cols=411 Identities=13% Similarity=0.048 Sum_probs=178.4
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHH
Q 040136 148 RESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVM 227 (681)
Q Consensus 148 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 227 (681)
++....-.+......|+.++|++++.+... .. +.+...+..+...+...|++++|.+++++.++.. +.+...+..+.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~-~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRV-HM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 444444445555555555555555555441 11 2333344555555555555555555555554442 11233344444
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 040136 228 KALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIH 307 (681)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 307 (681)
.++...|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+...+...+..+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChH
Confidence 44555555555555555554442 33333 4444455555555555555555555432 223333333444444445555
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHH-----HhcCCH---HHHHHHH
Q 040136 308 EAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGY-----VISGRF---DEAKAIF 379 (681)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~---~~a~~~~ 379 (681)
.|++.++.+.. .|+. ..-+ +. .....++..+ ...+++ ++|++ .
T Consensus 168 ~Al~~l~~~~~---~p~~---~~~l-------~~---------------~~~~~~~r~~~~~~~~~~~r~~~ad~Al~-~ 218 (765)
T PRK10049 168 PALGAIDDANL---TPAE---KRDL-------EA---------------DAAAELVRLSFMPTRSEKERYAIADRALA-Q 218 (765)
T ss_pred HHHHHHHhCCC---CHHH---HHHH-------HH---------------HHHHHHHHhhcccccChhHHHHHHHHHHH-H
Confidence 55544443332 1110 0000 00 0000111111 111122 44454 4
Q ss_pred HHHHHhC-CCCCCHH-HH----HHHHHHHHhcCChhHHHHHHHHHHhcCCC-cCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 040136 380 YDSMLSV-GCIPDVF-TF----NILIHGLCKQRRFGSALELVNAMAVKGCE-PNIVTYTILVDGFCKEGQLEKANIIINE 452 (681)
Q Consensus 380 ~~~~~~~-~~~p~~~-~~----~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 452 (681)
++.+.+. ...|+.. .+ ...+..+...|++++|...|+.+.+.+.+ |+. ....+...|...|++++|...|++
T Consensus 219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHH
Confidence 4444422 1122211 11 01122344556666666666666655321 211 111234456666666666666666
Q ss_pred HHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------------CC-
Q 040136 453 MLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCP------------LD- 519 (681)
Q Consensus 453 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------------~~- 519 (681)
+....... ..........+..++...|++++|.++++.+.... | |+
T Consensus 298 ~l~~~p~~--------------------~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~-P~~~~~~~~~~~~p~~ 356 (765)
T PRK10049 298 LFYHPETI--------------------ADLSDEELADLFYSLLESENYPGALTVTAHTINNS-PPFLRLYGSPTSIPND 356 (765)
T ss_pred HhhcCCCC--------------------CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC-CceEeecCCCCCCCCc
Confidence 55432100 00012233444445566666666666666655441 1 11
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 040136 520 --EITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPD-IVTYNSL 596 (681)
Q Consensus 520 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 596 (681)
...+..+...+...|+.++|+..++++..... .+...+..++..+...|++++|++.+++.++. .|+ ...+...
T Consensus 357 ~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P-~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~ 433 (765)
T PRK10049 357 DWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP-GNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQ 433 (765)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHH
Confidence 11223334444455555555555555544321 13444445555555555555555555555542 232 3333344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 040136 597 INGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 597 ~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
+..+...|++++|+.+++++++
T Consensus 434 a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 434 AWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 4444455555555555555554
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=3.2e-16 Score=171.73 Aligned_cols=431 Identities=11% Similarity=0.050 Sum_probs=301.5
Q ss_pred CCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 040136 182 QPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTL 261 (681)
Q Consensus 182 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 261 (681)
+.++.-..-.+.+....|+.++|++++.+..... +.+...+..+...+.+.|++++|.+++++..+.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3444445566777788889999998888887632 3345568888888888899999999999888764 5556777788
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCH
Q 040136 262 IHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRV 341 (681)
Q Consensus 262 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 341 (681)
+.++...|++++|...++++.+.. +.+.. +..+...+...|+.++|+..++++.+.... +...+..+..++...+..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCh
Confidence 888888899999999998888763 44555 777888888889999999999888876322 444556677777778888
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHH
Q 040136 342 DEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRF---GSALELVNAM 418 (681)
Q Consensus 342 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~---~~A~~~~~~~ 418 (681)
+.|+..++++.. ++.....+ ....+.. ..+ ..+.......+++ ++|+..++.+
T Consensus 167 e~Al~~l~~~~~-~p~~~~~l--------~~~~~~~-~~r--------------~~~~~~~~~~~r~~~ad~Al~~~~~l 222 (765)
T PRK10049 167 APALGAIDDANL-TPAEKRDL--------EADAAAE-LVR--------------LSFMPTRSEKERYAIADRALAQYDAL 222 (765)
T ss_pred HHHHHHHHhCCC-CHHHHHHH--------HHHHHHH-HHH--------------hhcccccChhHHHHHHHHHHHHHHHH
Confidence 888887776655 22100000 0000000 000 0000111122233 6788888888
Q ss_pred Hhc-CCCcCHh-hH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 040136 419 AVK-GCEPNIV-TY----TILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLI 492 (681)
Q Consensus 419 ~~~-~~~~~~~-~~----~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 492 (681)
.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.. .|+. ....+.
T Consensus 223 l~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~----------------------~P~~-a~~~la 279 (765)
T PRK10049 223 EALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQI----------------------IPPW-AQRWVA 279 (765)
T ss_pred HhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC----------------------CCHH-HHHHHH
Confidence 754 1122221 11 11133445678889988888887765311 1221 122256
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----------CCC---
Q 040136 493 HAFLRRGSLHEAHKLVNDMLFRGCPLD----EITYNGLIKALCNAGAVDKGLGLFEEMMRKGI-----------KPS--- 554 (681)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~--- 554 (681)
.+|...|++++|+..|+++.+.. +.+ ......+..++...|++++|..+++.+.+... .|+
T Consensus 280 ~~yl~~g~~e~A~~~l~~~l~~~-p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~ 358 (765)
T PRK10049 280 SAYLKLHQPEKAQSILTELFYHP-ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDW 358 (765)
T ss_pred HHHHhcCCcHHHHHHHHHHhhcC-CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchH
Confidence 78999999999999999987653 212 34566677788999999999999999987531 123
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLIS 633 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 633 (681)
...+..++..+...|+.++|++.++++... .+.+...+..+...+...|++++|++.++++.+. .|+ ...+..++.
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~ 435 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAW 435 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHH
Confidence 234567788899999999999999999886 3446788889999999999999999999999985 566 566677888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 634 WHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNL 670 (681)
Q Consensus 634 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~ 670 (681)
.+...|++++|.++++++++ ..|+......+-..+
T Consensus 436 ~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 436 TALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred HHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 89999999999999999998 467766655554444
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=3.3e-15 Score=160.31 Aligned_cols=445 Identities=11% Similarity=0.044 Sum_probs=254.0
Q ss_pred HHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHh---HHHHHHHHHhcC
Q 040136 123 KLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRS---YNVVLDVLVAGN 199 (681)
Q Consensus 123 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~ 199 (681)
...+.|++..|...|+++.+..+...+.++ .++..+...|+.++|+..+++.. .|+... ...+...+...|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~-----~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ-----SSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc-----cCCCCCHHHHHHHHHHHHHcC
Confidence 344555555555555555555432111222 44455555555555555555554 222111 111233444455
Q ss_pred CcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 040136 200 CHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLE 279 (681)
Q Consensus 200 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 279 (681)
++++|+++|+++++.... +...+..++..+...++.++|++.++.+.+.. |+...+..++..+...++..+|++.++
T Consensus 117 dyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 117 RWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred CHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 555555555555554322 23344444455555555555555555555442 333333333333333344434555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccH------HHHHHHH---H--hcC---CHHHHH
Q 040136 280 EMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITY------GVLMHGL---C--RTG---RVDEAR 345 (681)
Q Consensus 280 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~---~--~~g---~~~~A~ 345 (681)
++.+.. +.+...+..++.++.+.|-...|.++..+-... +.+....+ ..+++.- . ... -.+.|+
T Consensus 194 kll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 194 EAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 555543 333444455555555555555555444331100 00000000 0000000 0 001 123344
Q ss_pred HHHhhcCC-----CCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 040136 346 ALLNKIPS-----ANV-----VLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELV 415 (681)
Q Consensus 346 ~~~~~~~~-----~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~ 415 (681)
.-++.+.. |.. ....-.+-++...|++.++++ -++.+...+.+....+-..+..+|...++.++|..++
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~-~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIK-EYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHH-HHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 44444332 211 112234557788899999999 8999998887656667888999999999999999999
Q ss_pred HHHHhcC-----CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCccccHHHHHHHHHHHHhcCCCCCHH-HH
Q 040136 416 NAMAVKG-----CEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLS-LNTGDRIEEALGLYQDMLLEGVTANTV-TY 488 (681)
Q Consensus 416 ~~~~~~~-----~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~ 488 (681)
+.+.... .+++......|.-+|...+++++|..+++.+.+..+. ...-+. ....+.||-. .+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~-----------~~~~pn~d~~~~~ 419 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGL-----------PGKEPNDDWIEGQ 419 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCC-----------CCCCCCccHHHHH
Confidence 9987642 1224444578888999999999999999999874220 000000 0011122322 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 489 NTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRT 568 (681)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 568 (681)
..++..+...|+..+|++.++++... .|-|......+.+.+...|.+.+|+..++.+.... +-+..+....+.++...
T Consensus 420 ~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l 497 (822)
T PRK14574 420 TLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMAL 497 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhh
Confidence 44566778889999999999998777 37788888999999999999999999997776653 22556677788888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040136 569 RKANTALEFLRDMIHRGLTPDIVTYN 594 (681)
Q Consensus 569 g~~~~A~~~~~~~~~~~~~p~~~~~~ 594 (681)
|++.+|..+.+...+. .|+.....
T Consensus 498 ~e~~~A~~~~~~l~~~--~Pe~~~~~ 521 (822)
T PRK14574 498 QEWHQMELLTDDVISR--SPEDIPSQ 521 (822)
T ss_pred hhHHHHHHHHHHHHhh--CCCchhHH
Confidence 9999999999888874 45544333
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=4.6e-15 Score=159.15 Aligned_cols=440 Identities=13% Similarity=0.058 Sum_probs=307.5
Q ss_pred HHHHHhCCChHHHHHHHHHcHhhcCCCCCH--HhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 040136 156 MKYYGRGGVPGQATRLLLDMKSVYGCQPTF--RSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMV 233 (681)
Q Consensus 156 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 233 (681)
+-...+.|+++.|+..|+++.+. .|+. ..+ .++..+...|+.++|+..+++..... .........+...+...
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~---~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKA---GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhh---CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHc
Confidence 33455999999999999999832 3442 233 88888889999999999999988321 11223333335688888
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040136 234 NEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLV 313 (681)
Q Consensus 234 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 313 (681)
|++++|.++|+++.+.. +.++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.+
T Consensus 116 gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 116 KRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred CCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 99999999999999986 566788888889999999999999999999876 466666655555555567776799999
Q ss_pred HHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCC-CChHHHHH----HHHHHHh---------cCC---HHHHH
Q 040136 314 DRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPS-ANVVLLNT----VINGYVI---------SGR---FDEAK 376 (681)
Q Consensus 314 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~----l~~~~~~---------~g~---~~~a~ 376 (681)
+++.+.. +-+...+..+..++.+.|-...|.++..+-+. -+...+.- .+.-.++ .++ .+.|+
T Consensus 193 ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 193 SEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 9999873 33567778889999999999999999888765 11111111 0111111 112 23344
Q ss_pred HHHHHHHHh-CCCCCCH-HH----HHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHH
Q 040136 377 AIFYDSMLS-VGCIPDV-FT----FNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIII 450 (681)
Q Consensus 377 ~~~~~~~~~-~~~~p~~-~~----~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 450 (681)
. -++.+.. .+..|.. .. ..-.+-++...|++.++++.++.+...+.+....+-..+.++|...+++++|..++
T Consensus 272 a-~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 272 A-DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred H-HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 4 3333332 2222322 11 12335567788889999999999988776655667788888999999999999888
Q ss_pred HHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CC-
Q 040136 451 NEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGC-----------PL- 518 (681)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~- 518 (681)
.++....... ....++......|..+|...+++++|..+++.+.+... .|
T Consensus 351 ~~~~~~~~~~------------------~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn 412 (822)
T PRK14574 351 SSLYYSDGKT------------------FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN 412 (822)
T ss_pred HHHhhccccc------------------cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence 8886642110 00122344456788888889999999999988887411 11
Q ss_pred -CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 040136 519 -DE-ITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTP-DIVTYNS 595 (681)
Q Consensus 519 -~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ 595 (681)
|- ..+..++..+...|++.+|++.++++....+ -|......+.+.+...|.+.+|++.++..... .| +..+...
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP-~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~ 489 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAP-ANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERA 489 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHH
Confidence 11 2233455667778888888888888877643 37777888888888888888888888666653 44 4456667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 040136 596 LINGLCKMGCIQEALNLFDKLQAEGIYPDAVTY 628 (681)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 628 (681)
.+.++...|++.+|..+.+.+.+. .|+....
T Consensus 490 ~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~ 520 (822)
T PRK14574 490 QAETAMALQEWHQMELLTDDVISR--SPEDIPS 520 (822)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhh--CCCchhH
Confidence 777788888888888888888874 5665433
No 27
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.83 E-value=4.3e-14 Score=138.39 Aligned_cols=551 Identities=11% Similarity=0.054 Sum_probs=403.9
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHH-
Q 040136 92 LDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATR- 170 (681)
Q Consensus 92 ~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~- 170 (681)
+|...|..++..+...+|-.|....-. .+.--..|.+..|..++..--+.- +-++++|...+ +...++.|..
T Consensus 265 ~DikKaR~llKSvretnP~hp~gWIAs--ArLEEvagKl~~Ar~~I~~GCe~c-prSeDvWLeai----RLhp~d~aK~v 337 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPKHPPGWIAS--ARLEEVAGKLSVARNLIMKGCEEC-PRSEDVWLEAI----RLHPPDVAKTV 337 (913)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHH--HHHHHHhhHHHHHHHHHHHHHhhC-CchHHHHHHHH----hcCChHHHHHH
Confidence 567788888888776666444443333 333345566666666555443332 22444443332 2222222322
Q ss_pred ------------------------------HHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCh
Q 040136 171 ------------------------------LLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTV 220 (681)
Q Consensus 171 ------------------------------~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 220 (681)
++++..+ ..+.++..|... +...+.+.|.-++.+..+. + |.
T Consensus 338 vA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe--~iP~sv~LWKaA----VelE~~~darilL~rAvec-c-p~- 408 (913)
T KOG0495|consen 338 VANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALE--HIPRSVRLWKAA----VELEEPEDARILLERAVEC-C-PQ- 408 (913)
T ss_pred HHHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHH--hCCchHHHHHHH----HhccChHHHHHHHHHHHHh-c-cc-
Confidence 3333331 112333334332 3344555677777777664 1 22
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH----HCCCCCCHHHHHHH
Q 040136 221 YTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMI----LMGCTSDVQTFNDV 296 (681)
Q Consensus 221 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~----~~~~~~~~~~~~~l 296 (681)
-.-|.-++.+...++.|..++....+. ++.+...|.+-...--.+|+.+...+++.+-. ..|+..+...|..=
T Consensus 409 --s~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~e 485 (913)
T KOG0495|consen 409 --SMDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKE 485 (913)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHH
Confidence 223445667778899999999999876 67788899888888888999999988877654 57888899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--cccHHHHHHHHHhcCCHHHHHHHHhhcCC---CChHHHHHHHHHHHhcCC
Q 040136 297 IHGLCKVNRIHEAAKLVDRMLVRGFTPD--DITYGVLMHGLCRTGRVDEARALLNKIPS---ANVVLLNTVINGYVISGR 371 (681)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~ 371 (681)
...|-..|..-.+..+....+..|+.-. ..+|..-...|.+.+.++-|+.+|....+ .+...|...+..--..|.
T Consensus 486 Ae~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt 565 (913)
T KOG0495|consen 486 AEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGT 565 (913)
T ss_pred HHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCc
Confidence 9999999999999999999988877633 46888889999999999999999998877 556778888887778899
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 040136 372 FDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIIN 451 (681)
Q Consensus 372 ~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 451 (681)
.++... +++..... ++-....|......+-..|++..|..++....+.. +-+...|-.-+..-....+++.|..+|.
T Consensus 566 ~Esl~A-llqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~lla 642 (913)
T KOG0495|consen 566 RESLEA-LLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLA 642 (913)
T ss_pred HHHHHH-HHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHH
Confidence 998888 66666653 45566677777778888999999999999988874 3367788888888999999999999999
Q ss_pred HHHHCCCCCCc----------cccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 040136 452 EMLAKGLSLNT----------GDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEI 521 (681)
Q Consensus 452 ~~~~~~~~~~~----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 521 (681)
+....+.+... .+..++|..++++.++.- +.-...|..+...+-+.++.+.|.+.|..-.+. +|....
T Consensus 643 kar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ip 720 (913)
T KOG0495|consen 643 KARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIP 720 (913)
T ss_pred HHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCch
Confidence 98886554433 688899999998888763 223567788888899999999999999877666 566777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLC 601 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 601 (681)
.|..|...-.+.|.+-+|..++++..-+++. +...|-..+.+-.+.|+.+.|..+..+.++. ++.+...|..-|...-
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~ 798 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEP 798 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhcc
Confidence 8888888888899999999999999888655 7888999999999999999999999998875 5556677777777666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCc
Q 040136 602 KMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPN-DATWYILVRNLVKEIN 675 (681)
Q Consensus 602 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~ 675 (681)
+.++-......+++. .-|..+...+...+....+++.|++.|.+.++. .|| ..+|..+..-....|.
T Consensus 799 ~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~ 866 (913)
T KOG0495|consen 799 RPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGT 866 (913)
T ss_pred CcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCC
Confidence 666654444444433 446777777888888888888888888888874 344 4667666666666663
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.81 E-value=2.8e-14 Score=145.33 Aligned_cols=558 Identities=15% Similarity=0.092 Sum_probs=376.5
Q ss_pred hcCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHH
Q 040136 88 LRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQ 167 (681)
Q Consensus 88 l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 167 (681)
+-.+|+.+.|.+++..+.++.+ ..+..|..+..++-.+|+.+.+...+-.+.-..+ .+...|..+.....+.|++++
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHH
Confidence 3347999999999999999886 6678899999999999999999988777766664 467999999999999999999
Q ss_pred HHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHH----HHHHHHHhcCChhHHHHHH
Q 040136 168 ATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFG----VVMKALCMVNEVDSACSLL 243 (681)
Q Consensus 168 A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~----~ll~~~~~~g~~~~A~~~~ 243 (681)
|.-.|.++.+ .. +++...+---...|-+.|+...|...|.++.....+.|..-+. .+++.+...++.+.|.+.+
T Consensus 226 A~~cy~rAI~-~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 226 ARYCYSRAIQ-AN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHh-cC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999983 32 4555555556778889999999999999999985433333233 3456677778889999999
Q ss_pred HHHHhCC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH----------------------HH----HH
Q 040136 244 RDMTKHG-CVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQT----------------------FN----DV 296 (681)
Q Consensus 244 ~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~----------------------~~----~l 296 (681)
+.....+ -..+...++.++..+.+...++.|......+......+|..- |. .+
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 9887632 234556788999999999999999998888776222222111 11 22
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC--CcccHHHHHHHHHhcCCHHHHHHHHhhcCC----CChHHHHHHHHHHHhcC
Q 040136 297 IHGLCKVNRIHEAAKLVDRMLVRGFTP--DDITYGVLMHGLCRTGRVDEARALLNKIPS----ANVVLLNTVINGYVISG 370 (681)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g 370 (681)
.-++.+....+....+.....+....| +...|.-+..+|...|++.+|+.+|..+.. .+...|-.+..+|...|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 234445555666666666666666443 456788899999999999999999999877 56778999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh--------cCCCcCHhhHHHHHHHHHhcCC
Q 040136 371 RFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAV--------KGCEPNIVTYTILVDGFCKEGQ 442 (681)
Q Consensus 371 ~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~~ll~~~~~~g~ 442 (681)
..++|.+ +|+...... +-+...-..|...+.+.|+.++|.+.++.+.. .+..|+..........+.+.|+
T Consensus 464 e~e~A~e-~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 464 EYEEAIE-FYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred hHHHHHH-HHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 9999999 888777653 22444556677788999999999999988542 2334455555566677888888
Q ss_pred HHHHHHHHHHHHHCCC-----CCCc------------c--------------------ccHHHHH---HHHHHHHhcCCC
Q 040136 443 LEKANIIINEMLAKGL-----SLNT------------G--------------------DRIEEAL---GLYQDMLLEGVT 482 (681)
Q Consensus 443 ~~~A~~~~~~~~~~~~-----~~~~------------~--------------------~~~~~a~---~~~~~~~~~~~~ 482 (681)
.++-..+..+|+.... -+.. . ...+.+. ..+......+..
T Consensus 542 ~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Ls 621 (895)
T KOG2076|consen 542 REEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLS 621 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCc
Confidence 8776655555543211 0100 0 0000000 001111111111
Q ss_pred CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC
Q 040136 483 ANT--VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCP-LDEI----TYNGLIKALCNAGAVDKGLGLFEEMMRK-GIKPS 554 (681)
Q Consensus 483 ~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~ 554 (681)
.+. ..+..++.++++.+++++|..+...+.+.... .+.. .-...+.+.+..+++..|...++.|+.. +...+
T Consensus 622 iddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~ 701 (895)
T KOG2076|consen 622 IDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLD 701 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhh
Confidence 111 23455677888999999999998888765321 1222 2234456667788899998888888765 11111
Q ss_pred ---HHHHHHHHHHH-----------------------------------HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040136 555 ---SISCNILINGL-----------------------------------CRTRKANTALEFLRDMIHRGLTPDIVTYNSL 596 (681)
Q Consensus 555 ---~~~~~~l~~~~-----------------------------------~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 596 (681)
...|+...+.. ..++.+..|+..+-+.... .||...++.+
T Consensus 702 ~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~--~pd~Pl~nl~ 779 (895)
T KOG2076|consen 702 VYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ--NPDSPLINLC 779 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh--CCCCcHHHHH
Confidence 12333222211 2235566777776666653 5664444433
Q ss_pred HH-HHH----------hcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040136 597 IN-GLC----------KMGCIQEALNLFDKLQAEGIY-PDAVTYNTLISWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 597 ~~-~~~----------~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
+. ++. ++-.+-.++.++++..+.... --..++-.++++|...|-..-|..+|++.++.
T Consensus 780 lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 780 LGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCC
Confidence 32 121 111234566676666654211 13567778999999999999999999999974
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=1.2e-14 Score=135.14 Aligned_cols=365 Identities=15% Similarity=0.163 Sum_probs=175.5
Q ss_pred CCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 040136 182 QPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTL 261 (681)
Q Consensus 182 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 261 (681)
+.+..+|..+|.++|+--..+.|.+++++......+.+..+||.+|.+-.- ....+++.+|....+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHH
Confidence 345556666666666666666666666666655555566666666554322 1225566666666666666666666
Q ss_pred HHHHHhcCChhH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH----CCCCC----CcccH
Q 040136 262 IHALSKSNRVSE----ALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHE-AAKLVDRMLV----RGFTP----DDITY 328 (681)
Q Consensus 262 i~~~~~~~~~~~----A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~~~~~ 328 (681)
+.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. ..++| |...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 666666665543 34556666666666666666666666666555533 3333333332 11222 12234
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc
Q 040136 329 GVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPD---VFTFNILIHGLCKQ 405 (681)
Q Consensus 329 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~ 405 (681)
...+..|.+..+.+-|.++..-....+ -.. -+.|+ ..-|..+....|+.
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~----------------N~~------------~ig~~~~~~fYyr~~~~licq~ 411 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGD----------------NWK------------FIGPDQHRNFYYRKFFDLICQM 411 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCC----------------chh------------hcChHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554443322200 000 01111 12234444445555
Q ss_pred CChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCH
Q 040136 406 RRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANT 485 (681)
Q Consensus 406 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 485 (681)
...+.-..+|+.|.-.-.-|+..+...++.+..-.+.++-..+++..+..-|... +-+-..+++..+....+.|+.
T Consensus 412 es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~----r~~l~eeil~~L~~~k~hp~t 487 (625)
T KOG4422|consen 412 ESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTF----RSDLREEILMLLARDKLHPLT 487 (625)
T ss_pred HHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhh----hHHHHHHHHHHHhcCCCCCCC
Confidence 5555555555555544444445555555555555555555555555554443221 011112222222222222222
Q ss_pred HHHHHHHHHHHhc-CCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC---CHHHHH
Q 040136 486 VTYNTLIHAFLRR-GSLHEAH-KLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGI-KP---SSISCN 559 (681)
Q Consensus 486 ~~~~~li~~~~~~-g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p---~~~~~~ 559 (681)
..-..+-.+..+. -++.++. ..-.++.+. .......+.+.-.+.+.|..++|.++|..+.+++- .| ......
T Consensus 488 p~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~ 565 (625)
T KOG4422|consen 488 PEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMA 565 (625)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHH
Confidence 2111111111110 0111211 122233333 33444566666667777888888888777765432 22 223333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 560 ILINGLCRTRKANTALEFLRDMIHR 584 (681)
Q Consensus 560 ~l~~~~~~~g~~~~A~~~~~~~~~~ 584 (681)
-+++.....++...|..+++-|...
T Consensus 566 El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 566 ELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 4455555566666777777666554
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.79 E-value=4.6e-14 Score=143.78 Aligned_cols=541 Identities=12% Similarity=0.063 Sum_probs=346.6
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHH
Q 040136 117 YYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLV 196 (681)
Q Consensus 117 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 196 (681)
....+..+..+|++++|..++.++++..+ .....|..|...|-..|+.+++...+-.+. ... +-|...|..+.....
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAA-HL~-p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAA-HLN-PKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHH-hcC-CCChHHHHHHHHHHH
Confidence 34445566777999999999999999986 478899999999999999999998776665 222 566788999999999
Q ss_pred hcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH----HHHHHHHHhcCChh
Q 040136 197 AGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVY----QTLIHALSKSNRVS 272 (681)
Q Consensus 197 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~li~~~~~~~~~~ 272 (681)
+.|++++|.-.|.+.++.. +++...+-.-...|-+.|+...|..-|.++.....+.|..-. ..+++.+...++.+
T Consensus 219 ~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred hcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999985 335555556677888999999999999999987522222222 23456677778889
Q ss_pred HHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------------------------CCCC
Q 040136 273 EALMLLEEMILM-GCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRG---------------------------FTPD 324 (681)
Q Consensus 273 ~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~ 324 (681)
.|.+.++..... +-..+...++.++..+.+...++.|......+.... ..++
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 999999888762 224456678888999999999999999888877611 1222
Q ss_pred ccc-HHHHHHHHHhcCCHHHHHHHHhhcCC----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 040136 325 DIT-YGVLMHGLCRTGRVDEARALLNKIPS----ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILI 399 (681)
Q Consensus 325 ~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll 399 (681)
..+ ...+.-...+.++..+++.-|..... .++..|..+..+|...|++.+|+. ++..+......-+...|..+.
T Consensus 378 l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~-~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 378 LRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALR-LLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred chhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHH-HHHHHhcCccccchhhhHHHH
Confidence 222 11122222334445555444433222 456678899999999999999999 888888776666788899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc-----------------
Q 040136 400 HGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNT----------------- 462 (681)
Q Consensus 400 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------- 462 (681)
.+|...|.++.|...|+..+... +.+...-..|...+.+.|+.++|.+.+..+...+.....
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~ 535 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDI 535 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHH
Confidence 99999999999999999998763 335666777888899999999999999987633211000
Q ss_pred ---cccHHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------------------
Q 040136 463 ---GDRIEEALGLYQDMLLEGV-----TANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFR-------------------- 514 (681)
Q Consensus 463 ---~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------- 514 (681)
.|+.++-+.....|..... -|+..--.....+-...+...+-......+...
T Consensus 536 l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~ 615 (895)
T KOG2076|consen 536 LFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAV 615 (895)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhh
Confidence 2233322222222221110 000000000000000000011101111111110
Q ss_pred ---CCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 515 ---GCPLD-E-ITYNGLIKALCNAGAVDKGLGLFEEMMRKGI--KPSS---ISCNILINGLCRTRKANTALEFLRDMIHR 584 (681)
Q Consensus 515 ---~~~~~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 584 (681)
|...+ . ..+..++.++++.+++++|..+...+..... .++. ..-...+.+.+..+++..|...++.|...
T Consensus 616 e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 616 ELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred hhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 11111 1 2344566677888888888888888776521 1111 22345566677788888888888888764
Q ss_pred -CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 040136 585 -GL--TPD-IVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDA--VTYNTLISWHFKEGLFDDAFLILHKGVANGFVP 658 (681)
Q Consensus 585 -~~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 658 (681)
+. .|. ...|+...+...+.++-.--.+++..+... .|+. ..+......+...+.+..|++.+-++.. ..|
T Consensus 696 ~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~--~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~--~~p 771 (895)
T KOG2076|consen 696 FQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVK--NKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR--QNP 771 (895)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CccCCcceeeeechhHhhccchHHHHHHHHHHHH--hCC
Confidence 11 121 234554555555555544444444444432 3332 2222233345677888999998888887 467
Q ss_pred CHHHHHHHH
Q 040136 659 NDATWYILV 667 (681)
Q Consensus 659 ~~~~~~~ll 667 (681)
|....+.++
T Consensus 772 d~Pl~nl~l 780 (895)
T KOG2076|consen 772 DSPLINLCL 780 (895)
T ss_pred CCcHHHHHH
Confidence 766555444
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=4e-14 Score=131.77 Aligned_cols=352 Identities=16% Similarity=0.146 Sum_probs=257.7
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 040136 252 VPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVL 331 (681)
Q Consensus 252 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 331 (681)
+.+..++..||.++|+.-..+.|.+++++......+.+..+||.+|.+-.-. ...+++.+|......||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHH
Confidence 4457899999999999999999999999998877788999999998765433 338889999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH-
Q 040136 332 MHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGS- 410 (681)
Q Consensus 332 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~- 410 (681)
+.+.++-|+++.|+..+-+ +..+|++-|+.|...+|..+|..+++.++..+
T Consensus 280 L~c~akfg~F~~ar~aalq----------------------------il~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQ----------------------------ILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred HHHHHHhcchHHHHHHHHH----------------------------HHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 9999999999998886554 77889999999999999999999998887644
Q ss_pred HHHHHHHHHh----cCCCc----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCC
Q 040136 411 ALELVNAMAV----KGCEP----NIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVT 482 (681)
Q Consensus 411 A~~~~~~~~~----~~~~~----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 482 (681)
+..++.++.. +.++| |...|...+..|.+..+.+-|..+-.-+.... .... +.
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~-N~~~------------------ig 392 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD-NWKF------------------IG 392 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhh------------------cC
Confidence 4444444433 22333 44566777788888888888887766554431 1100 11
Q ss_pred C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040136 483 A---NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCN 559 (681)
Q Consensus 483 ~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 559 (681)
| ...-|..+..+.|+....+.-...|+.|+-.-+-|+..+...++.+..-.|.++-.-++|.+++..|...+.....
T Consensus 393 ~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~e 472 (625)
T KOG4422|consen 393 PDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLRE 472 (625)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHH
Confidence 1 2234666777888888899999999998877777888888888888888888888888888888877555555554
Q ss_pred HHHHHHHhcC-CH--------H-----HHHHHH-------HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 560 ILINGLCRTR-KA--------N-----TALEFL-------RDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 560 ~l~~~~~~~g-~~--------~-----~A~~~~-------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
.++..+++.. +. . -|..++ .++... .......+..+-.+.+.|+.++|.+++..+.+
T Consensus 473 eil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~ 550 (625)
T KOG4422|consen 473 EILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLR 550 (625)
T ss_pred HHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHh
Confidence 5555555443 11 0 011111 122222 33444566777778899999999999999976
Q ss_pred CC----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 040136 619 EG----IYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGF 656 (681)
Q Consensus 619 ~~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 656 (681)
.+ ..|.......+++.-...+....|...++-|...+.
T Consensus 551 ~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 551 KHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred cCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 53 233333444666777888889999999999887654
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=2.1e-13 Score=128.64 Aligned_cols=476 Identities=11% Similarity=0.071 Sum_probs=296.2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHH
Q 040136 148 RESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVM 227 (681)
Q Consensus 148 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 227 (681)
+...|.....--..+++...|..+|++.. ... ..+...|--.+..=.++.+...|..++++....-+.. ...|--.+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERAL-dvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV-dqlWyKY~ 148 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERAL-DVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV-DQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH-hcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH-HHHHHHHH
Confidence 34455555555555667777888888777 222 5566667777777777778888888887777652221 22344444
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 040136 228 KALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIH 307 (681)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 307 (681)
..--..|++..|.++|+...+- .|+..+|++.|+.-.+.+..+.|..++++..-. .|++.+|-....--.+.|...
T Consensus 149 ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHH
Confidence 4445567788888888877653 577888888888878888888888888777653 577777777777777778888
Q ss_pred HHHHHHHHHHHC-CC-CCCcccHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChHHHHHHHHHHHhcCCHHHHHHHH-
Q 040136 308 EAAKLVDRMLVR-GF-TPDDITYGVLMHGLCRTGRVDEARALLNKIPS-----ANVVLLNTVINGYVISGRFDEAKAIF- 379 (681)
Q Consensus 308 ~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~- 379 (681)
.+..+++.+.+. |- ..+...+.+....-.++..++.|.-+|+-..+ .....|..+...--+-|+.....+.+
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 888887777653 11 11233444455545566677777777654433 11334444444333444444333211
Q ss_pred ------HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCH--hhHHHHHHHHHhcCCHHHHHHHHH
Q 040136 380 ------YDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNI--VTYTILVDGFCKEGQLEKANIIIN 451 (681)
Q Consensus 380 ------~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~ 451 (681)
++.+.+. -+-|-.+|-..++.-...|+.+...++++..... ++|-. ..|.-.|-.+..- .+|.
T Consensus 305 ~KRk~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinY-------alye 375 (677)
T KOG1915|consen 305 GKRKFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINY-------ALYE 375 (677)
T ss_pred hhhhhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHH-------HHHH
Confidence 2222222 2335556666666666667777777777766654 23311 1122222221110 0111
Q ss_pred HHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 040136 452 EMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAF----LRRGSLHEAHKLVNDMLFRGCPLDEITYNGLI 527 (681)
Q Consensus 452 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 527 (681)
++. ..+++.+.++|+..+.. ++....|+..+--.| .++.+...|.+++...+. ..|-..+|...|
T Consensus 376 Ele--------~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YI 444 (677)
T KOG1915|consen 376 ELE--------AEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYI 444 (677)
T ss_pred HHH--------hhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHH
Confidence 111 12344444444444441 333445554443333 467788889888887764 467788888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCH
Q 040136 528 KALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGL-TPDIVTYNSLINGLCKMGCI 606 (681)
Q Consensus 528 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~ 606 (681)
..=.+.+++|....++++.++-++. +..+|......-...|+.+.|..+|+-.++... ......|.+.|..-...|.+
T Consensus 445 elElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ 523 (677)
T KOG1915|consen 445 ELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEF 523 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchH
Confidence 8888889999999999999887644 678888887777788999999999998887521 12235677777777788999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----hcC-----------ChhHHHHHHHHHHH
Q 040136 607 QEALNLFDKLQAEGIYPDAVTYNTLISWHF-----KEG-----------LFDDAFLILHKGVA 653 (681)
Q Consensus 607 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 653 (681)
+.|..+++.+++. .+...+|..+...-. +.| ....|..+|+++..
T Consensus 524 ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 524 EKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 9999999999885 455556666665433 334 45677788877765
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=6.8e-15 Score=137.64 Aligned_cols=466 Identities=12% Similarity=0.059 Sum_probs=293.0
Q ss_pred HHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhH-HHHHHHHHhcCChhHHHHHHHHHHhCCCC----CChhhHHHHHHHH
Q 040136 191 VLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTF-GVVMKALCMVNEVDSACSLLRDMTKHGCV----PNSVVYQTLIHAL 265 (681)
Q Consensus 191 ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~ 265 (681)
+.+-|..+....+|+..|+-+.++...|+.... ..+.+.+.+...+.+|++.++.....-.. ......+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 344555566778888888888888777776543 34556677888889999988877654211 1123455555567
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccH--------HHHHHHHHh
Q 040136 266 SKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITY--------GVLMHGLCR 337 (681)
Q Consensus 266 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~ 337 (681)
.+.|+++.|+.-|+...+. .|+..+-..|+-++...|+.++..+.|.+|+.....||..-| ..|+.-..+
T Consensus 287 iq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred EecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 7889999999999888776 578777666777777889999999999998765333332211 122221111
Q ss_pred c---------C--CHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 040136 338 T---------G--RVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIP-DVFTFNILIHGLCKQ 405 (681)
Q Consensus 338 ~---------g--~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~ 405 (681)
. + +.++++-.-.++..|-+. -++....++..+.+......| -...-..-..-+.+.
T Consensus 365 nd~lk~~ek~~ka~aek~i~ta~kiiapvi~------------~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~ 432 (840)
T KOG2003|consen 365 NDHLKNMEKENKADAEKAIITAAKIIAPVIA------------PDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKN 432 (840)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhccccc------------cchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhc
Confidence 1 1 112222111111111000 000000010111111111000 000001112346677
Q ss_pred CChhHHHHHHHHHHhcCCCcCHhhHHHHHHHH-Hh-cCCHHHHHHHHHHHHHCCC-----------CCCccccHHHHHHH
Q 040136 406 RRFGSALELVNAMAVKGCEPNIVTYTILVDGF-CK-EGQLEKANIIINEMLAKGL-----------SLNTGDRIEEALGL 472 (681)
Q Consensus 406 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~-~~-~g~~~~A~~~~~~~~~~~~-----------~~~~~~~~~~a~~~ 472 (681)
|+++.|.++++-+.+..-+.....-+.|-..+ .+ -.++..|..+-+..+..+. ..-..|+.+.|.+.
T Consensus 433 ~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ 512 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEF 512 (840)
T ss_pred cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHH
Confidence 78888777777666543222222223232222 22 2345666655555443221 11126778888888
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 040136 473 YQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIK 552 (681)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 552 (681)
|++.+.....-....| .+.-.+-..|+.++|++.|-++... ...+..+...+.+.|....+...|++++.+.... ++
T Consensus 513 ykeal~ndasc~ealf-niglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip 589 (840)
T KOG2003|consen 513 YKEALNNDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IP 589 (840)
T ss_pred HHHHHcCchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CC
Confidence 8877765222111222 2333467789999999988776543 2446777888888898899999999999888775 55
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 553 PSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLI 632 (681)
Q Consensus 553 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 632 (681)
.|+....-|...|-+.|+-.+|.+..-+--.. ++-+..+..+|..-|....-+++|+.+|+++.- +.|+..-|..++
T Consensus 590 ~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmi 666 (840)
T KOG2003|consen 590 NDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMI 666 (840)
T ss_pred CCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHH
Confidence 67888899999999999999998887654443 566788888888888888889999999998876 689999998877
Q ss_pred HH-HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCccc
Q 040136 633 SW-HFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKEINME 677 (681)
Q Consensus 633 ~~-~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 677 (681)
.. +.+.|++..|..+++...++ ++.|......|++.+...|-.+
T Consensus 667 asc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 667 ASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence 55 46689999999999999875 6778888888888887777544
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.77 E-value=2.4e-12 Score=126.37 Aligned_cols=453 Identities=11% Similarity=0.049 Sum_probs=253.2
Q ss_pred hCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHH----HHCCCCCChhhHHHHHHHHHhcCCh
Q 040136 161 RGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDM----LSKGISPTVYTFGVVMKALCMVNEV 236 (681)
Q Consensus 161 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m----~~~~~~p~~~~~~~ll~~~~~~g~~ 236 (681)
+...++.|..++++..+ .++.+...|.+-...=-.+|+.+.+.+++.+- ...|+..+..-|..=...|-..|.+
T Consensus 418 rLetYenAkkvLNkaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv 495 (913)
T KOG0495|consen 418 RLETYENAKKVLNKARE--IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSV 495 (913)
T ss_pred HHHHHHHHHHHHHHHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCCh
Confidence 33444555555555441 22444444444444444455555544444332 2234444444444444455555555
Q ss_pred hHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040136 237 DSACSLLRDMTKHGCVP--NSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVD 314 (681)
Q Consensus 237 ~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 314 (681)
-.+..+....+..|+.- .-.+|+.-...|.+.+.++-|..+|...++.- +-+...|...+..--..|..+....+++
T Consensus 496 ~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allq 574 (913)
T KOG0495|consen 496 ITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQ 574 (913)
T ss_pred hhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 55555555555444321 12345555555555555555555555554432 2334444444444444455555555555
Q ss_pred HHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC
Q 040136 315 RMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPS---ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPD 391 (681)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 391 (681)
++... ++-....|.....-+-..|++..|+.++.+.-+ .+...|-.-+.....+..++.|.. ++..... ..|+
T Consensus 575 kav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~-llakar~--~sgT 650 (913)
T KOG0495|consen 575 KAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARD-LLAKARS--ISGT 650 (913)
T ss_pred HHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHH-HHHHHhc--cCCc
Confidence 55544 122333344444444455555555555554433 233445555555555555555555 4433332 2344
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHH
Q 040136 392 VFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALG 471 (681)
Q Consensus 392 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~ 471 (681)
...|..-+...--.+..++|.+++++.++. ++.-...|..+.+.+-+.++++.|...|..-.+.
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--------------- 714 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--------------- 714 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc---------------
Confidence 444444444444445555555555555543 1222344555555555555555555544433332
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 040136 472 LYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGI 551 (681)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 551 (681)
++-.+..|..+...--+.|++-.|..+++...-.+ |-+...|...+.+=.+.|..+.|..+..++++. .
T Consensus 715 ---------cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-c 783 (913)
T KOG0495|consen 715 ---------CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-C 783 (913)
T ss_pred ---------CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-C
Confidence 23345667777777777788888888888877764 667888888888888888888888888888776 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040136 552 KPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTL 631 (681)
Q Consensus 552 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 631 (681)
+-+-..|..-|....+.++-....+.+++. .-|..+.-.+...+.....+++|.+.|.+.++.+ +.+-.+|..+
T Consensus 784 p~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~f 857 (913)
T KOG0495|consen 784 PSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWF 857 (913)
T ss_pred CccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHH
Confidence 334556666666666666655555444443 3466666677777777788888888888888753 3335677778
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 040136 632 ISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 632 ~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
...+...|.-++-.+++.+...
T Consensus 858 ykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 858 YKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHhCCHHHHHHHHHHHhc
Confidence 8888888887777788887776
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=6e-14 Score=131.41 Aligned_cols=483 Identities=12% Similarity=0.072 Sum_probs=290.6
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhCCChHHHHHHHHHcHhhc-CCCC--CHHhH
Q 040136 113 TFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFI-LIMKYYGRGGVPGQATRLLLDMKSVY-GCQP--TFRSY 188 (681)
Q Consensus 113 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~--~~~~~ 188 (681)
+..++..+..-|..+....+|...++-+++...-|+..... .+...+.+...+.+|+++|+...... .+.. .+...
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 44555556666666667777777777777765444444332 45666777778888888877665211 0011 11233
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH--------HH
Q 040136 189 NVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVY--------QT 260 (681)
Q Consensus 189 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------~~ 260 (681)
+-+...+++.|+++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|.+|......+|..-| ..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 44445567788888888888877765 467666555555666678888888888887654222221111 11
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCcccHHHHH
Q 040136 261 LIHALSKSNRVSEALMLLEEMILMGCTSDVQTF----NDVIHGLCKVN----RIHEAAKLVDRMLVRGFTPDDITYGVLM 332 (681)
Q Consensus 261 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~----~~li~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 332 (681)
|+.--.+. +.++.|.+.. +.+..-+ ..+|.- .-.- ..+..++.++.-....+..+. -..-.
T Consensus 358 ll~eai~n-------d~lk~~ek~~-ka~aek~i~ta~kiiap-vi~~~fa~g~dwcle~lk~s~~~~la~dl--ei~ka 426 (840)
T KOG2003|consen 358 LLNEAIKN-------DHLKNMEKEN-KADAEKAIITAAKIIAP-VIAPDFAAGCDWCLESLKASQHAELAIDL--EINKA 426 (840)
T ss_pred HHHHHHhh-------HHHHHHHHhh-hhhHHHHHHHHHHHhcc-ccccchhcccHHHHHHHHHhhhhhhhhhh--hhhHH
Confidence 11111111 1122222111 0111000 000000 0000 012222222221111000000 01112
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChHH----HHHHHHHHHh--cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 040136 333 HGLCRTGRVDEARALLNKIPSANVVL----LNTVINGYVI--SGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQR 406 (681)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 406 (681)
.-|.+.|+++.|.++++-+...|..+ -+.|-..+.. ..++.+|.+ +-+...... +-+......-.+.....|
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqq-yad~aln~d-ryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQ-YADIALNID-RYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHH-HHHHHhccc-ccCHHHhhcCCceeeecC
Confidence 34678888888888887776644433 2223222222 234555555 333332211 112222222222334578
Q ss_pred ChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHH
Q 040136 407 RFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTV 486 (681)
Q Consensus 407 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 486 (681)
++++|...+++.+...-.-....|+ +.-.+-..|++++|+..|-.+..- + ..+..
T Consensus 505 d~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i--------------------l----~nn~e 559 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI--------------------L----LNNAE 559 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH--------------------H----HhhHH
Confidence 8889988888887652111112222 223456678888888777655432 1 12677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 487 TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLC 566 (681)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 566 (681)
+...+.+.|-...+...|++++-+.... +|.|+.+...|...|-+.|+-..|.+.+-+--+. ++.+..+...|...|.
T Consensus 560 vl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyi 637 (840)
T KOG2003|consen 560 VLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYI 637 (840)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHH
Confidence 7788888999999999999999888766 6889999999999999999999999877665554 4568889999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040136 567 RTRKANTALEFLRDMIHRGLTPDIVTYNSLINGL-CKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGL 640 (681)
Q Consensus 567 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 640 (681)
...-+++|+.+|++..- +.|+..-|..++..| .+.|++++|.++++...++ ++-|.....-|++.+...|.
T Consensus 638 dtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 638 DTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred hhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 99999999999998765 789999999887755 5899999999999999986 67778888888888887775
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.6e-11 Score=116.23 Aligned_cols=465 Identities=12% Similarity=0.072 Sum_probs=320.0
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHH
Q 040136 116 VYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVL 195 (681)
Q Consensus 116 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~ 195 (681)
.+.....--..++++..|..+|+.+...+. .+...|...+.+-.++..+..|..++++.... ++.-...|.-.+-.=
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHH
Confidence 333334444466778888888888888764 46677888888888888888888888887621 122223444445445
Q ss_pred HhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 040136 196 VAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEAL 275 (681)
Q Consensus 196 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 275 (681)
-..|+...|.++|++..+. .|+...|.+.++.-.+.+..+.|..+++...-. .|++.+|-...+.-.+.|+...|.
T Consensus 152 E~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHH
Confidence 5678888888888888775 688888888888888888888888888887764 388888888888888888888888
Q ss_pred HHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--cccHHHHHHHHHhcCC---HHHHHHH-
Q 040136 276 MLLEEMILM-GC-TSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPD--DITYGVLMHGLCRTGR---VDEARAL- 347 (681)
Q Consensus 276 ~~~~~m~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~---~~~A~~~- 347 (681)
.+++...+. |- ..+...+.+...--..+..++.|.-+++-.++. ++.+ ...|..+...--+-|+ +++++--
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 888877753 10 111223333334344566777888888777765 2222 2334434333334444 3333321
Q ss_pred ----HhhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH--HHHHH--------HHHHHhcCChhH
Q 040136 348 ----LNKIPS---ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVF--TFNIL--------IHGLCKQRRFGS 410 (681)
Q Consensus 348 ----~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~--~~~~l--------l~~~~~~~~~~~ 410 (681)
++.... .|..+|-..+......|+.+...+ .|+.... +++|-.. .|... +-.-....+.+.
T Consensus 307 Rk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire-~yErAIa-nvpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRE-TYERAIA-NVPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHH-HHHHHHc-cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 222222 455677777777778899999988 7776665 4555321 12211 112235788999
Q ss_pred HHHHHHHHHhcCCCcCHhhHHHHHHH----HHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHH
Q 040136 411 ALELVNAMAVKGCEPNIVTYTILVDG----FCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTV 486 (681)
Q Consensus 411 A~~~~~~~~~~~~~~~~~~~~~ll~~----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 486 (681)
+.++++..++. ++....|+..+--. -.++.++..|.+++...+.. .|...
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~-------------------------cPK~K 438 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK-------------------------CPKDK 438 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc-------------------------CCchh
Confidence 99999998874 34455555554444 44677888888888776654 57788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHH
Q 040136 487 TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKG-IKPSSISCNILINGL 565 (681)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~ 565 (681)
++...|..-.+.++++.+..+|++.++-+ |-+..+|......=...|+.+.|..+|.-+++.. .......|...|+.-
T Consensus 439 lFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFE 517 (677)
T KOG1915|consen 439 LFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFE 517 (677)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhh
Confidence 88888998899999999999999999985 6788899888888888999999999999998862 333456777788888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHHC
Q 040136 566 CRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLC-----KMG-----------CIQEALNLFDKLQAE 619 (681)
Q Consensus 566 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~ 619 (681)
...|.++.|..+++++++. .+...+|-.+...-. +.+ ....|..+|+.+...
T Consensus 518 i~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 518 IEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred hhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 8899999999999999986 344556665554332 333 456788888876653
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=3.9e-11 Score=113.50 Aligned_cols=386 Identities=14% Similarity=0.081 Sum_probs=252.2
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHH
Q 040136 217 SPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSD--VQTFN 294 (681)
Q Consensus 217 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~--~~~~~ 294 (681)
..|.+.+-.....+-+.|....|+..|......- |-.-.+|..|.+... + ++.+..... |.+.| ...=-
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit---~----~e~~~~l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELIT---D----IEILSILVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhc---h----HHHHHHHHh-cCcccchHHHHH
Confidence 3454444444455666777888888887776653 334444444433322 1 122222221 11211 11111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHH
Q 040136 295 DVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDE 374 (681)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 374 (681)
-+..++....+.+++.+-.+.....|++.+...-+....+.....++++|+.+|+++.+.|+.-
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYR---------------- 295 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYR---------------- 295 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc----------------
Confidence 2345555666777777777777777776555555555555556667777777666654422100
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 375 AKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEML 454 (681)
Q Consensus 375 a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 454 (681)
--|..+|+.++-. +..+- .+..+.+-...--+-.+.|...+.+-|.-.++.++|...|+..+
T Consensus 296 --------------l~dmdlySN~LYv--~~~~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRAL 357 (559)
T KOG1155|consen 296 --------------LDDMDLYSNVLYV--KNDKS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRAL 357 (559)
T ss_pred --------------chhHHHHhHHHHH--HhhhH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHH
Confidence 1144555555532 22211 11111111111012345567777778888888888888888888
Q ss_pred HCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 040136 455 AKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAG 534 (681)
Q Consensus 455 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 534 (681)
+.+. .....|+.+.+-|...++...|++-++.+++.+ |.|-..|-.|+.+|.-.+
T Consensus 358 kLNp------------------------~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~ 412 (559)
T KOG1155|consen 358 KLNP------------------------KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMK 412 (559)
T ss_pred hcCc------------------------chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhc
Confidence 7642 256678888888999999999999999998874 778889999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040136 535 AVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFD 614 (681)
Q Consensus 535 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 614 (681)
.+.-|+-+|+++.+-. +.|...|.+|+.+|.+.++.++|++.|++....|-. +...+..|.+.+-+.++.++|...|+
T Consensus 413 Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~ye 490 (559)
T KOG1155|consen 413 MHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYE 490 (559)
T ss_pred chHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999998863 337788999999999999999999999998886533 55778889999999999999999888
Q ss_pred HHHHC----CCCCC-H-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040136 615 KLQAE----GIYPD-A-VTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKEI 674 (681)
Q Consensus 615 ~~~~~----~~~p~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 674 (681)
+.++. |...+ . ....-|...+.+.+++++|..+...... | .+...--..|++.+.+..
T Consensus 491 k~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~-~-~~e~eeak~LlReir~~~ 554 (559)
T KOG1155|consen 491 KYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK-G-ETECEEAKALLREIRKIQ 554 (559)
T ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc-C-CchHHHHHHHHHHHHHhc
Confidence 87763 33323 2 1223356677888999999988887776 3 677777778888777654
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=4.5e-11 Score=113.09 Aligned_cols=332 Identities=11% Similarity=0.034 Sum_probs=233.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCC-ChHHHHHHHHH
Q 040136 287 TSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSA-NVVLLNTVING 365 (681)
Q Consensus 287 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~ 365 (681)
..|...+-.....+-+.|....|++.|...+.. -+..|.+-+....-..+.+.+..+...+... ....--.+..+
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKA 236 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 445444444444556677788888888777654 2233433333333333444444433333331 11122233455
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CcCHhhHHHHHHHHHhcCCH
Q 040136 366 YVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGC--EPNIVTYTILVDGFCKEGQL 443 (681)
Q Consensus 366 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~ 443 (681)
+....+.++++. =.+.....|++-+...-+....+.....+++.|+.+|+++.+... -.|..+|..++-. +..+-
T Consensus 237 ~~el~q~~e~~~-k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~s 313 (559)
T KOG1155|consen 237 YQELHQHEEALQ-KKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKS 313 (559)
T ss_pred HHHHHHHHHHHH-HHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhH
Confidence 666667777777 556666666665555555555566677888888888888887621 0155667666533 22221
Q ss_pred HHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 040136 444 EKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITY 523 (681)
Q Consensus 444 ~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 523 (681)
.- ..+.+-... + . +--+.|...+.+-|.-.++.++|...|+..++.+ |-...+|
T Consensus 314 kL--s~LA~~v~~-------------------i--d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aW 367 (559)
T KOG1155|consen 314 KL--SYLAQNVSN-------------------I--D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAW 367 (559)
T ss_pred HH--HHHHHHHHH-------------------h--c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHH
Confidence 11 111110000 0 0 1134566777788889999999999999999985 5677889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 524 NGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKM 603 (681)
Q Consensus 524 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 603 (681)
+.+++-|...++...|++-++++++-.. .|...|-.|+.+|.-.+...-|+-+|++..+. .+-|...|.+|.++|.+.
T Consensus 368 TLmGHEyvEmKNt~AAi~sYRrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl 445 (559)
T KOG1155|consen 368 TLMGHEYVEMKNTHAAIESYRRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKL 445 (559)
T ss_pred HHhhHHHHHhcccHHHHHHHHHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHh
Confidence 9999999999999999999999999753 38899999999999999999999999999985 244789999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040136 604 GCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 604 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
++.++|++.|......| ..+...+..|.+.|-+.++.++|.+.+++.++.
T Consensus 446 ~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 446 NRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred ccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999976 446789999999999999999999999988873
No 39
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.62 E-value=7.5e-10 Score=109.07 Aligned_cols=507 Identities=13% Similarity=0.146 Sum_probs=288.8
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHH
Q 040136 117 YYVLIDKLGANKEFKVIDSVLLQMKEEG-IICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVL 195 (681)
Q Consensus 117 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~ 195 (681)
+..-+..+..+|+.......|+.....- +.....+|...++.....|.++-+..+|++.. +.++..-+-.|..+
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYL-----k~~P~~~eeyie~L 179 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYL-----KVAPEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHH-----hcCHHHHHHHHHHH
Confidence 3344455567777778888887766543 23345677788888888888888888888888 56666677888888
Q ss_pred HhcCCcCcHHHHHHHHHHCC------CCCChhhHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCCCh--hhHHHHHHH
Q 040136 196 VAGNCHKVAPNLFYDMLSKG------ISPTVYTFGVVMKALCMVNEV---DSACSLLRDMTKHGCVPNS--VVYQTLIHA 264 (681)
Q Consensus 196 ~~~~~~~~A~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~g~~---~~A~~~~~~~~~~~~~~~~--~~~~~li~~ 264 (681)
+..+++++|.+.+...+... -+.+...|..+-....+.-+. -....+++.+...- +|. ..|++|.+-
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf--tDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF--TDQLGFLWCSLADY 257 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC--cHHHHHHHHHHHHH
Confidence 88888888888887776542 122444555555544443322 23444555554432 333 568888888
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHCCC-
Q 040136 265 LSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVN----------------------RIHEAAKLVDRMLVRGF- 321 (681)
Q Consensus 265 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~----------------------~~~~a~~~~~~~~~~~~- 321 (681)
|.+.|.+++|.+++++.... ...+.-|..+.+.|..-. +++....-|+.+...+.
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 99999999999998887754 223333444444443211 12223333333333210
Q ss_pred ----------CCCcccHHHHHHHHHhcCCHHHHHHHHhhcCC---------CChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040136 322 ----------TPDDITYGVLMHGLCRTGRVDEARALLNKIPS---------ANVVLLNTVINGYVISGRFDEAKAIFYDS 382 (681)
Q Consensus 322 ----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 382 (681)
+-++..|..-+.. ..|+..+-...|.+... .-...|..+...|-..|+.+.|.. +++.
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv-ifek 412 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARV-IFEK 412 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHH-HHHH
Confidence 1112222222222 23444444445544332 222468888889999999999998 7777
Q ss_pred HHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-----------CCc------CHhhHHHHHHHHHhcCC
Q 040136 383 MLSVGCIPD---VFTFNILIHGLCKQRRFGSALELVNAMAVKG-----------CEP------NIVTYTILVDGFCKEGQ 442 (681)
Q Consensus 383 ~~~~~~~p~---~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-----------~~~------~~~~~~~ll~~~~~~g~ 442 (681)
..+...+-- ..+|.....+-.+..+++.|+++++.....- .++ +...|...++.--..|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 666544322 2445555666667888888888887765321 111 23356666666666778
Q ss_pred HHHHHHHHHHHHHCCCCCCc-----------cccHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHh---cCCHHHHHHH
Q 040136 443 LEKANIIINEMLAKGLSLNT-----------GDRIEEALGLYQDMLLEGVTANT-VTYNTLIHAFLR---RGSLHEAHKL 507 (681)
Q Consensus 443 ~~~A~~~~~~~~~~~~~~~~-----------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~---~g~~~~A~~~ 507 (681)
++....+++.+++..+..+. ..-++++...|++-+..-..|+. ..|+..+.-+.+ ...++.|..+
T Consensus 493 festk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 88888888888776554332 34455555555554444344444 345554444432 2246667777
Q ss_pred HHHHHhCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 508 VNDMLFRGCPLDEITYNGLIK--ALCNAGAVDKGLGLFEEMMRKGIKPS--SISCNILINGLCRTRKANTALEFLRDMIH 583 (681)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 583 (681)
|++.++ |+||...-+.-|+- .=.+.|....|+.+++++... +++. ...||..|.-....=-+.....++++.++
T Consensus 573 FEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe 650 (835)
T KOG2047|consen 573 FEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE 650 (835)
T ss_pred HHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH
Confidence 777666 45543322222211 112346666666666665543 2222 24455555444444444555666666666
Q ss_pred CCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCC
Q 040136 584 RGLTPDIVTYNS---LINGLCKMGCIQEALNLFDKLQAEGIYP--DAVTYNTLISWHFKEGL 640 (681)
Q Consensus 584 ~~~~p~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~ 640 (681)
. -|+...-.. ..+.-++.|..+.|..++....+. +.| +...|.+.=..-.+.|+
T Consensus 651 ~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 651 S--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred h--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCC
Confidence 3 444433322 223335667777777776666554 233 34455655555666666
No 40
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.60 E-value=2.8e-11 Score=123.18 Aligned_cols=536 Identities=14% Similarity=0.078 Sum_probs=312.4
Q ss_pred hCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCH
Q 040136 106 SQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTF 185 (681)
Q Consensus 106 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 185 (681)
...|..|+..+|..++.-|+..|+.+.|- +|.-|.-...+.+..+|..++.+..++|+.+.+. .|-.
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------------ep~a 83 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------------EPLA 83 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------------CCch
Confidence 44678888889999999999999999888 8888887777778888888888877777776552 5677
Q ss_pred HhHHHHHHHHHhcCCcCcHHHHHHH-HHH-------CCC-----------------CCChhhHHHHHHHHHhcCChhHHH
Q 040136 186 RSYNVVLDVLVAGNCHKVAPNLFYD-MLS-------KGI-----------------SPTVYTFGVVMKALCMVNEVDSAC 240 (681)
Q Consensus 186 ~~~~~ll~~~~~~~~~~~A~~~~~~-m~~-------~~~-----------------~p~~~~~~~ll~~~~~~g~~~~A~ 240 (681)
.+|..++.+|.+.|+... ++..++ |.. .|+ -||..+ ++......|-++.+.
T Consensus 84 Dtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqll 159 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLL 159 (1088)
T ss_pred hHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHH
Confidence 788888888888887654 222222 111 111 112111 111111112222222
Q ss_pred ------------------------------HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 040136 241 ------------------------------SLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDV 290 (681)
Q Consensus 241 ------------------------------~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~ 290 (681)
+++.......-.|++.+|.+++++-...|+.+.|..++.+|.+.|.+.+.
T Consensus 160 kll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred HHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 22222221111488999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcC
Q 040136 291 QTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISG 370 (681)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g 370 (681)
..|-.|+-+ .++...++.++.-|.+.|+.|+..|+..-+-.+..+|....+......-.......+..+..+.....
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k 316 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANK 316 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHH
Confidence 877777755 88889999999999999999999999887777777665333222211111111222333333211111
Q ss_pred CHHHH-----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC--C-CcCHhhHHHHHHHHHhcCC
Q 040136 371 RFDEA-----KAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKG--C-EPNIVTYTILVDGFCKEGQ 442 (681)
Q Consensus 371 ~~~~a-----~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~--~-~~~~~~~~~ll~~~~~~g~ 442 (681)
+.+.- .. .++...-.|.......|.... -...+|.-+...++...+..-- . ..++..|..++.-|.+.-+
T Consensus 317 ~l~~nl~~~v~~-s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e 394 (1088)
T KOG4318|consen 317 RLRQNLRKSVIG-STKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIE 394 (1088)
T ss_pred HHHHHHHHHHHH-HhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHH
Confidence 11111 11 111111113222223333222 2233677777777776665321 1 1234455555555544322
Q ss_pred HHHHHHHHH--HHHHCCCCCCc-------------cccHHHHHHHHHHHHhcCCC-------CCHHHHHHHHHHHHhcCC
Q 040136 443 LEKANIIIN--EMLAKGLSLNT-------------GDRIEEALGLYQDMLLEGVT-------ANTVTYNTLIHAFLRRGS 500 (681)
Q Consensus 443 ~~~A~~~~~--~~~~~~~~~~~-------------~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~li~~~~~~g~ 500 (681)
......++. +.+........ +.....-..+...-...... +-...-+.++..+++.-+
T Consensus 395 ~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n 474 (1088)
T KOG4318|consen 395 RHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYN 474 (1088)
T ss_pred hhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 111111111 11111111000 00000000000000000000 111233455666666666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040136 501 LHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK--GIKPSSISCNILINGLCRTRKANTALEFL 578 (681)
Q Consensus 501 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 578 (681)
..+++..-+.....-++ ..|..|++-++.....+.|..+.++.... .+..+..-+..+.+.+.+.+....+..++
T Consensus 475 ~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL 551 (1088)
T KOG4318|consen 475 KLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTIL 551 (1088)
T ss_pred HHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHH
Confidence 66666444433332111 57889999999999999999999988654 33445666788899999999999999999
Q ss_pred HHHHHCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 040136 579 RDMIHRGL-TPD-IVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGF 656 (681)
Q Consensus 579 ~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 656 (681)
+++.+.-. .|+ ..+.-.+++.....|+.+.-.++++-+...|+... ..++..+.+.++...|.+..+..... +
T Consensus 552 ~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qk-y 626 (1088)
T KOG4318|consen 552 YEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQK-Y 626 (1088)
T ss_pred hhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHHHH-h
Confidence 99987411 222 34555677777888999999999988888775442 44555666777777777777666553 4
Q ss_pred CCCHHHHHHHHHHHH
Q 040136 657 VPNDATWYILVRNLV 671 (681)
Q Consensus 657 ~~~~~~~~~ll~~~~ 671 (681)
+|.+.....+.+.+.
T Consensus 627 k~~P~~~e~lcrlv~ 641 (1088)
T KOG4318|consen 627 KPYPKDLEGLCRLVY 641 (1088)
T ss_pred cCChHHHHHHHHHHH
Confidence 555555444444433
No 41
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=4.8e-11 Score=113.63 Aligned_cols=220 Identities=19% Similarity=0.145 Sum_probs=167.0
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCC
Q 040136 402 LCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGV 481 (681)
Q Consensus 402 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 481 (681)
+.-.|+...|..-|+........ +...|-.+..+|....+.++....|+...+.+.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp----------------------- 391 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDP----------------------- 391 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-----------------------
Confidence 33467888888888888876422 333477777788899999998888888877653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040136 482 TANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNIL 561 (681)
Q Consensus 482 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 561 (681)
.|+.+|..-...+.-.+++++|..-|++.+... |-+...|..+.-+..+.+++++++..|++.+++ ++..+..|+..
T Consensus 392 -~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~f 468 (606)
T KOG0547|consen 392 -ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLF 468 (606)
T ss_pred -CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHH
Confidence 366777777777888888999999999888774 557777877777778888999999999998887 44467888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-------H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 040136 562 INGLCRTRKANTALEFLRDMIHRGLTPD-------I--VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTL 631 (681)
Q Consensus 562 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 631 (681)
...+..++++++|.+.|+..++. .|+ . .+-..++. +.-.+++..|++++.++.+. .|- ...|..|
T Consensus 469 AeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~tl 543 (606)
T KOG0547|consen 469 AEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIEL--DPKCEQAYETL 543 (606)
T ss_pred HHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHcc--CchHHHHHHHH
Confidence 89999999999999999988874 333 1 11122222 22348888999999998884 554 5678888
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 040136 632 ISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 632 ~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
.......|+.++|+++|++...
T Consensus 544 aq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 544 AQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 8888999999999999988764
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=1.2e-14 Score=140.39 Aligned_cols=260 Identities=15% Similarity=0.145 Sum_probs=109.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcC
Q 040136 363 INGYVISGRFDEAKAIFYDSMLSVG-CIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEG 441 (681)
Q Consensus 363 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 441 (681)
...+.+.|++++|++ +++...... .+.|...|..+.......++++.|...++++...+. .+...+..++.. ...+
T Consensus 15 A~~~~~~~~~~~Al~-~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKALE-VLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-cccc
Confidence 445556666666666 443222222 122344444455566677888888888888877642 255566666666 6788
Q ss_pred CHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCH
Q 040136 442 QLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRG-CPLDE 520 (681)
Q Consensus 442 ~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 520 (681)
++++|..++....+. .+++..+..++..+.+.++++++.++++.+.... .+.+.
T Consensus 92 ~~~~A~~~~~~~~~~-------------------------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 146 (280)
T PF13429_consen 92 DPEEALKLAEKAYER-------------------------DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSA 146 (280)
T ss_dssp ---------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-H
T ss_pred ccccccccccccccc-------------------------ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCH
Confidence 888888777665443 2356667778888889999999999998876542 34577
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 521 ITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGL 600 (681)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 600 (681)
..|..+...+.+.|+.++|+..++++++..+. |....+.++..+...|+.+++.++++...... +.|...+..+..++
T Consensus 147 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~ 224 (280)
T PF13429_consen 147 RFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAY 224 (280)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHh
Confidence 78888889999999999999999999987432 57778889999999999999888888887752 44566788899999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 601 CKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
...|+.++|...+++..+.. +.|..+...+++++...|+.++|.++++++.+
T Consensus 225 ~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 225 LQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 99999999999999998852 44677778899999999999999999888764
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=1.5e-11 Score=124.42 Aligned_cols=116 Identities=11% Similarity=0.031 Sum_probs=56.9
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHH--HHHHHHHhcCCHHHHH
Q 040136 268 SNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYG--VLMHGLCRTGRVDEAR 345 (681)
Q Consensus 268 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~ 345 (681)
.|+++.|.+.+....+..-. ....|........+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 46666666666654443211 1222222334445666667776666666553 33332221 2244555666666666
Q ss_pred HHHhhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 040136 346 ALLNKIPS---ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVG 387 (681)
Q Consensus 346 ~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 387 (681)
..++++.+ .++.....+...|.+.|++++|.+ ++..+.+.+
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~-~l~~l~k~~ 217 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD-ILPSMAKAH 217 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHcC
Confidence 65555444 233344444445555555555555 444444433
No 44
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.58 E-value=5.6e-09 Score=103.09 Aligned_cols=502 Identities=10% Similarity=0.038 Sum_probs=330.3
Q ss_pred HhcCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChH
Q 040136 87 LLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPG 166 (681)
Q Consensus 87 ~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 166 (681)
.+-.+++...-...|+.++..-+.......+...+......|-++-+.+++++..+..+ .....-+..++..++.+
T Consensus 111 ~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P----~~~eeyie~L~~~d~~~ 186 (835)
T KOG2047|consen 111 FLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAP----EAREEYIEYLAKSDRLD 186 (835)
T ss_pred HHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCH----HHHHHHHHHHHhccchH
Confidence 33457888888888888888777777777888888888899999999999999998654 45667788888999999
Q ss_pred HHHHHHHHcHhh------cCCCCCHHhHHHHHHHHHhcCC---cCcHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCC
Q 040136 167 QATRLLLDMKSV------YGCQPTFRSYNVVLDVLVAGNC---HKVAPNLFYDMLSKGISPT--VYTFGVVMKALCMVNE 235 (681)
Q Consensus 167 ~A~~~~~~~~~~------~~~~~~~~~~~~ll~~~~~~~~---~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~ 235 (681)
+|.+.+..+... .| +.+-..|..+-...+++-+ --....+++.++.. -+| ...|..|.+.|.+.|.
T Consensus 187 eaa~~la~vln~d~f~sk~g-kSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~ 263 (835)
T KOG2047|consen 187 EAAQRLATVLNQDEFVSKKG-KSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGL 263 (835)
T ss_pred HHHHHHHHhcCchhhhhhcc-cchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhh
Confidence 999999887621 11 4455567777666665533 33444555555544 334 4578999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC----------------------ChhHHHHHHHHHHHCC--------
Q 040136 236 VDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSN----------------------RVSEALMLLEEMILMG-------- 285 (681)
Q Consensus 236 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----------------------~~~~A~~~~~~m~~~~-------- 285 (681)
+++|..+|++....- .++.-|..+.++|+... +++-.+.-|+.+...+
T Consensus 264 ~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 264 FEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred hHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 999999999987652 33444555555554321 1222333444444321
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------cccHHHHHHHHHhcCCHHHHHHHHhhcCCCCh
Q 040136 286 ---CTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPD------DITYGVLMHGLCRTGRVDEARALLNKIPSANV 356 (681)
Q Consensus 286 ---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 356 (681)
-+.++..|..-+. +..|+..+-...+.++.+. +.|. ...|..+.+.|-..|+++.|+.+|++....+-
T Consensus 342 LRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 1223344443333 2356777888888888764 3332 23578889999999999999999999887332
Q ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-----------------CHHHHHHHHHHHHhcCChhHHH
Q 040136 357 -------VLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIP-----------------DVFTFNILIHGLCKQRRFGSAL 412 (681)
Q Consensus 357 -------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-----------------~~~~~~~ll~~~~~~~~~~~A~ 412 (681)
.+|-.-...-.+..+++.|++ +.+......-.| +...|...+......|-++...
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~-lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk 497 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALK-LMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTK 497 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHH-HHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHH
Confidence 345555566667788888988 544443221111 2234455566666678888999
Q ss_pred HHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc----------------cccHHHHHHHHHHH
Q 040136 413 ELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNT----------------GDRIEEALGLYQDM 476 (681)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~~a~~~~~~~ 476 (681)
.+++.+.+..+.. +.......-.+-.+..++++.+++++-+..-.-|+. ..+++.|..+|++.
T Consensus 498 ~vYdriidLriaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 498 AVYDRIIDLRIAT-PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9999998875432 222222222234455677777776543332222221 56889999999999
Q ss_pred HhcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 040136 477 LLEGVTANTVTYNTLIH--AFLRRGSLHEAHKLVNDMLFRGCPLD--EITYNGLIKALCNAGAVDKGLGLFEEMMRKGIK 552 (681)
Q Consensus 477 ~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 552 (681)
++ |.+|...-+.-|+- .--+.|-...|+.+++++... +++. ...||..|.--...=.+.....+|+++++. -
T Consensus 577 L~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--L 652 (835)
T KOG2047|consen 577 LD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--L 652 (835)
T ss_pred Hh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--C
Confidence 98 55554332222221 223457788899999997654 4432 346777666544444467788999999986 4
Q ss_pred CCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCH
Q 040136 553 PSSIS---CNILINGLCRTRKANTALEFLRDMIHR-GLTPDIVTYNSLINGLCKMGCI 606 (681)
Q Consensus 553 p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~ 606 (681)
|+... .--+.+.-++.|..+.|..++.-..+- +..-+...|.+.-..-.+.|+-
T Consensus 653 p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGne 710 (835)
T KOG2047|consen 653 PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNE 710 (835)
T ss_pred ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCH
Confidence 55433 334455667889999999999877664 2333567788888888899993
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=1.5e-11 Score=124.50 Aligned_cols=259 Identities=12% Similarity=0.049 Sum_probs=184.4
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHH
Q 040136 367 VISGRFDEAKAIFYDSMLSVGCIPDVFTFN--ILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLE 444 (681)
Q Consensus 367 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~--~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 444 (681)
.+.|+++.|.. .+..+.+. .|+..... .....+...|+++.|...++.+.+.. +-+...+..+...|.+.|+++
T Consensus 129 ~~~g~~~~A~~-~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 129 QQRGDEARANQ-HLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHCCCHHHHHH-HHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHH
Confidence 45555555555 55555432 34433222 23556777888888888888887764 446677788888888888888
Q ss_pred HHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 040136 445 KANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYN 524 (681)
Q Consensus 445 ~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 524 (681)
+|..++..+.+...... ++..++ ....|..++.......+.+...++++.+.+. .+.++....
T Consensus 205 ~a~~~l~~l~k~~~~~~-----~~~~~l-----------~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~ 267 (398)
T PRK10747 205 SLLDILPSMAKAHVGDE-----EHRAML-----------EQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQV 267 (398)
T ss_pred HHHHHHHHHHHcCCCCH-----HHHHHH-----------HHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHH
Confidence 88888888877643210 000000 0012333333334445566666777666544 356888889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040136 525 GLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMG 604 (681)
Q Consensus 525 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 604 (681)
.+...+...|+.++|...+++..+. .|+.... ++.+....++.+++++..++..+. .+-|...+..+...|.+.|
T Consensus 268 ~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~-~P~~~~l~l~lgrl~~~~~ 342 (398)
T PRK10747 268 AMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ-HGDTPLLWSTLGQLLMKHG 342 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999999885 4454322 234444669999999999999886 3345667888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 605 CIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 605 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
++++|.+.|+++.+ ..|+..++..+..++.+.|+.++|.+++++.+.
T Consensus 343 ~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 343 EWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999998 489999999999999999999999999998875
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=7.6e-11 Score=114.51 Aligned_cols=490 Identities=13% Similarity=0.058 Sum_probs=236.3
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 040136 91 PLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATR 170 (681)
Q Consensus 91 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 170 (681)
+..+..|+-+-+. ..+...++....++...+.-.|.+..|..++..-.-.+ .+......+..++.+..++++|..
T Consensus 29 q~~y~~a~f~adk---V~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~--~d~~cryL~~~~l~~lk~~~~al~ 103 (611)
T KOG1173|consen 29 QHRYKTALFWADK---VAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEK--RDIACRYLAAKCLVKLKEWDQALL 103 (611)
T ss_pred HHhhhHHHHHHHH---HHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555443333 33445666666777777777777777777776654433 255666777777777777777777
Q ss_pred HHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 040136 171 LLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHG 250 (681)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 250 (681)
++.+.. +..++..|..--. ...-..+.+. ++.. +......+-.-.+.|....+.++|...+.+....+
T Consensus 104 vl~~~~----~~~~~f~yy~~~~--~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D 171 (611)
T KOG1173|consen 104 VLGRGH----VETNPFSYYEKDA--ANTLELNSAG----EDLM--INLESSICYLRGKVYVALDNREEARDKYKEALLAD 171 (611)
T ss_pred Hhcccc----hhhcchhhcchhh--hceeccCccc----cccc--ccchhceeeeeeehhhhhccHHHHHHHHHHHHhcc
Confidence 765332 0112222111100 0000011111 0000 11111122222334555566777777777766543
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc
Q 040136 251 CVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMG----CTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDI 326 (681)
Q Consensus 251 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 326 (681)
...+..+...-.. ..-.+.+.++.+.... ...+......+.........-+.....-.+..-.+..-+..
T Consensus 172 ----~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~d 245 (611)
T KOG1173|consen 172 ----AKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLD 245 (611)
T ss_pred ----hhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHH
Confidence 3333332221111 1111222222222110 00111111111111100000000000000000111222333
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 040136 327 TYGVLMHGLCRTGRVDEARALLNKIPSA---NVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLC 403 (681)
Q Consensus 327 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~ 403 (681)
....-.+-+...+++.+..++++.+.+. ....+..-|.++...|+..+-.. +-..+.+. .+-...+|-++.-.|.
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~-lsh~LV~~-yP~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFL-LSHKLVDL-YPSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHH-HHHHHHHh-CCCCCcchhhHHHHHH
Confidence 3344444455555666666655555442 22233334445555555555544 33334432 2334455666655555
Q ss_pred hcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCC
Q 040136 404 KQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTA 483 (681)
Q Consensus 404 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 483 (681)
..|+..+|.+.|.+..... +.=...|-.+...|+-.|..++|...+...-+.- +-
T Consensus 324 ~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~------------------------~G 378 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM------------------------PG 378 (611)
T ss_pred HhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc------------------------cC
Confidence 6666666666665554331 1112345555556666666666655555443320 00
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCC----CCHHH
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK--GIK----PSSIS 557 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----p~~~~ 557 (681)
...-+.-+.--|.+.++.+.|.+.|.+.... .|.|+..++-+.-.....+.+.+|..+|+..+.. ... -...+
T Consensus 379 ~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~ 457 (611)
T KOG1173|consen 379 CHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPT 457 (611)
T ss_pred CcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHH
Confidence 1111222333456667777777777776665 3556667776666666667777777777766521 000 12345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 558 CNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISW 634 (681)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 634 (681)
++.|+.+|.+.+++++|+..+++.+.. .+-|..++.++.-.|...|+++.|++.|.+.+. +.||..+...+++.
T Consensus 458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 458 LNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL 531 (611)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence 666777777777777777777776664 334666666676677777777777777777665 46666555555543
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.57 E-value=2e-11 Score=124.22 Aligned_cols=132 Identities=13% Similarity=-0.015 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHH
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIK--ALCNAGAVDKGLGLFEEMMRKGIKPSS--ISCN 559 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~ 559 (681)
+...+..+...+...|+.++|.+++++..+.. +.+......++. .....++.+.+...++...+... -|. ....
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p-~~~~~~ll~ 339 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD-DKPKCCINR 339 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC-CChhHHHHH
Confidence 34444444445555555555555555554431 111110000111 11223444555555555554321 122 3444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 560 ILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQ 617 (681)
Q Consensus 560 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 617 (681)
++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555555532222234555555555555555566555655555543
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=3.1e-11 Score=122.85 Aligned_cols=230 Identities=13% Similarity=0.054 Sum_probs=160.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHH
Q 040136 398 LIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDML 477 (681)
Q Consensus 398 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 477 (681)
....+...|+++.|...++.+.+.. +-+..++..+...+.+.|+++.|.+.+..+.+.+..
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~------------------ 219 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF------------------ 219 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC------------------
Confidence 4666777888888888888887764 335667777888888888888888888887776422
Q ss_pred hcCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 040136 478 LEGVTANTVTYN----TLIHAFLRRGSLHEAHKLVNDMLFRG---CPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKG 550 (681)
Q Consensus 478 ~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 550 (681)
+...+. .........+..+++.+.+..+.+.. .+.+...+..+...+...|+.++|...+++..+..
T Consensus 220 ------~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~ 293 (409)
T TIGR00540 220 ------DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL 293 (409)
T ss_pred ------CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Confidence 222111 11111122233333344444444431 12478889999999999999999999999999974
Q ss_pred CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 040136 551 IKPSSIS-CNILINGLCRTRKANTALEFLRDMIHRGLTPDI--VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVT 627 (681)
Q Consensus 551 ~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 627 (681)
....... ...........++.+.+.+.+++..+. .+-|. ....++.+.+.+.|++++|.+.|+........|+...
T Consensus 294 pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~ 372 (409)
T TIGR00540 294 GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND 372 (409)
T ss_pred CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH
Confidence 3322111 122222234457889999999988875 22244 5667899999999999999999995444335899999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 628 YNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
+..+...+.+.|+.++|.+++++.+.
T Consensus 373 ~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 373 LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999998765
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=8.7e-13 Score=130.53 Aligned_cols=163 Identities=17% Similarity=0.127 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 486 VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGL 565 (681)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 565 (681)
.+|+.+.+-+.....+|.|...|+..+... +-+-.+|-.++..|.+.++++.|+-.|+.+++.++. +.+....++..+
T Consensus 456 YayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~ 533 (638)
T KOG1126|consen 456 YAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQ 533 (638)
T ss_pred hhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHH
Confidence 344444444444444444444444444331 122233444444555555555555555555543322 334444444445
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHH
Q 040136 566 CRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGLFDDA 644 (681)
Q Consensus 566 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 644 (681)
-+.|+.++|+++++++...+.+ |+-.--.-+..+...+++++|...++++.+. .|+ ..++..++..|.+.|+.+.|
T Consensus 534 ~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~A 610 (638)
T KOG1126|consen 534 HQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLA 610 (638)
T ss_pred HHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHH
Confidence 5555555555555555443211 2222222333444445555555555555552 332 33444455555555555555
Q ss_pred HHHHHHHHH
Q 040136 645 FLILHKGVA 653 (681)
Q Consensus 645 ~~~~~~~~~ 653 (681)
+.-|.-|.+
T Consensus 611 l~~f~~A~~ 619 (638)
T KOG1126|consen 611 LLHFSWALD 619 (638)
T ss_pred HHhhHHHhc
Confidence 555555544
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.55 E-value=3.5e-14 Score=137.22 Aligned_cols=260 Identities=16% Similarity=0.161 Sum_probs=69.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 040136 261 LIHALSKSNRVSEALMLLEEMILMG-CTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTG 339 (681)
Q Consensus 261 li~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 339 (681)
+...+.+.|++++|++++++..... .+.|...|..+...+...++++.|++.++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 3445555555555555554332221 1223333344444444555555555555555544322 33334444433 3444
Q ss_pred CHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 340 RVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMA 419 (681)
Q Consensus 340 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 419 (681)
++++|.+++++.-+ . .++...+..++..+.+.++++++..+++.+.
T Consensus 92 ~~~~A~~~~~~~~~--------------------------------~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~ 137 (280)
T PF13429_consen 92 DPEEALKLAEKAYE--------------------------------R--DGDPRYLLSALQLYYRLGDYDEAEELLEKLE 137 (280)
T ss_dssp ------------------------------------------------------------H-HHHTT-HHHHHHHHHHHH
T ss_pred cccccccccccccc--------------------------------c--ccccchhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44544444333111 1 1233333444444555555555555555544
Q ss_pred hcC-CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 040136 420 VKG-CEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRR 498 (681)
Q Consensus 420 ~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 498 (681)
... .+.+...|..+...+.+.|+.++|...+++.++.. +.|......++..+...
T Consensus 138 ~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~------------------------P~~~~~~~~l~~~li~~ 193 (280)
T PF13429_consen 138 ELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD------------------------PDDPDARNALAWLLIDM 193 (280)
T ss_dssp H-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-------------------------TT-HHHHHHHHHHHCTT
T ss_pred hccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------------CCCHHHHHHHHHHHHHC
Confidence 321 22344455555555555555555555555555542 11344555555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040136 499 GSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFL 578 (681)
Q Consensus 499 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 578 (681)
|+.+++.++++...+.. +.|+..+..+..+|...|+.++|..+|++..+.. +.|+.....+..++...|+.++|.++.
T Consensus 194 ~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~ 271 (280)
T PF13429_consen 194 GDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLR 271 (280)
T ss_dssp CHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT------------
T ss_pred CChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccc
Confidence 55555555555554442 3344455555556666666666666666655542 225555555556666666666666555
Q ss_pred HHHH
Q 040136 579 RDMI 582 (681)
Q Consensus 579 ~~~~ 582 (681)
++..
T Consensus 272 ~~~~ 275 (280)
T PF13429_consen 272 RQAL 275 (280)
T ss_dssp ----
T ss_pred cccc
Confidence 5543
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.4e-10 Score=110.14 Aligned_cols=510 Identities=13% Similarity=0.047 Sum_probs=323.0
Q ss_pred CCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHH
Q 040136 112 HTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVV 191 (681)
Q Consensus 112 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 191 (681)
.+..-+..+++-+..+.++.-|.-+-+++...+ .++.-...++.++.-.|+++.|..+...-.-+ ..|..+....
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le---~~d~~cryL~ 88 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE---KRDIACRYLA 88 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh---hhhHHHHHHH
Confidence 456667777777777777888877777777666 35555556677777777777777766654311 5666666677
Q ss_pred HHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 040136 192 LDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRV 271 (681)
Q Consensus 192 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 271 (681)
...+.+..++++|..++..-. +.-+.+.|...=. ...-..+.+.+.. .. ......+-.-...|....+.
T Consensus 89 ~~~l~~lk~~~~al~vl~~~~---~~~~~f~yy~~~~--~~~l~~n~~~~~~----~~--~~essic~lRgk~y~al~n~ 157 (611)
T KOG1173|consen 89 AKCLVKLKEWDQALLVLGRGH---VETNPFSYYEKDA--ANTLELNSAGEDL----MI--NLESSICYLRGKVYVALDNR 157 (611)
T ss_pred HHHHHHHHHHHHHHHHhcccc---hhhcchhhcchhh--hceeccCcccccc----cc--cchhceeeeeeehhhhhccH
Confidence 777777777777777765320 1111111111000 0111111111000 00 00111111122345556677
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHC-CCCCCcccHHHHHHHHHhcCCHHHHHHHH-
Q 040136 272 SEALMLLEEMILMGCTSDVQTFNDVIHGLCKV-NRIHEAAKLVDRMLVR-GFTPDDITYGVLMHGLCRTGRVDEARALL- 348 (681)
Q Consensus 272 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~- 348 (681)
++|...+.+.... |...+..+...-... -..++-..+++.+--. -..-+......+.....-...-+.....-
T Consensus 158 ~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~ 233 (611)
T KOG1173|consen 158 EEARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNE 233 (611)
T ss_pred HHHHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCc
Confidence 8888888877743 444443332211110 0011112222210000 00011111111211110000000000000
Q ss_pred -hhcCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc
Q 040136 349 -NKIPS--ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEP 425 (681)
Q Consensus 349 -~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~ 425 (681)
+.+.. .++.......+-+...+++.+..+ +.+.+.+. .++....+..-|.++...|+..+-..+=.++.+. .|.
T Consensus 234 ~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~k-it~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~ 310 (611)
T KOG1173|consen 234 DESLIGLAENLDLLAEKADRLYYGCRFKECLK-ITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPS 310 (611)
T ss_pred hhhhhhhhhcHHHHHHHHHHHHHcChHHHHHH-HhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCC
Confidence 01111 455566666777888999999999 66665553 2445555555667888899888877777777766 355
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040136 426 NIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAH 505 (681)
Q Consensus 426 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 505 (681)
...+|-++.--|.-.|..++|++.|.+....+.. =...|....+.|+-.|..++|.
T Consensus 311 ~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~------------------------fgpaWl~fghsfa~e~EhdQAm 366 (611)
T KOG1173|consen 311 KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT------------------------FGPAWLAFGHSFAGEGEHDQAM 366 (611)
T ss_pred CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc------------------------ccHHHHHHhHHhhhcchHHHHH
Confidence 6788999998888899999999999887665321 2457888999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 040136 506 KLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHR- 584 (681)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 584 (681)
..+..+.+. .+-....+--+.--|.+.+..+.|.++|.++.... +-|+..++-+.-.....+.+.+|..+|+..+..
T Consensus 367 aaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~i 444 (611)
T KOG1173|consen 367 AAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVI 444 (611)
T ss_pred HHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHh
Confidence 999887765 23333344455667888999999999999998863 337788888888888899999999999988742
Q ss_pred -CCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 040136 585 -GLT----PDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPN 659 (681)
Q Consensus 585 -~~~----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 659 (681)
.+. --..+++.|..+|.+.+.+++|+..+++.+.. .+-|..++.+++-.|...|+++.|.+.|.+.+- +.|+
T Consensus 445 k~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~ 521 (611)
T KOG1173|consen 445 KSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPD 521 (611)
T ss_pred hhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCc
Confidence 111 13456889999999999999999999999986 356788999999999999999999999999995 8899
Q ss_pred HHHHHHHHHHHHhc
Q 040136 660 DATWYILVRNLVKE 673 (681)
Q Consensus 660 ~~~~~~ll~~~~~~ 673 (681)
..+...++..+...
T Consensus 522 n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 522 NIFISELLKLAIED 535 (611)
T ss_pred cHHHHHHHHHHHHh
Confidence 98888887766544
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=3.5e-11 Score=108.57 Aligned_cols=221 Identities=15% Similarity=0.128 Sum_probs=142.1
Q ss_pred cCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCChhHH
Q 040136 198 GNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVP---NSVVYQTLIHALSKSNRVSEA 274 (681)
Q Consensus 198 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A 274 (681)
.++.++|...|.+|.+.+ +.+..+-.+|.+.|.+.|.+|.|+++...+.++.--+ ...+...|.+-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467888888888888864 2255666778888888888999998888887652111 112344566778888888999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHhcCCHHHHHHHHhh
Q 040136 275 LMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDD----ITYGVLMHGLCRTGRVDEARALLNK 350 (681)
Q Consensus 275 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~ 350 (681)
.++|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+..+.. ..|.-+...+....+.+.|+.++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99988888754 334566778888888888899999888888877554332 2355555555566667777776666
Q ss_pred cCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 040136 351 IPSAN---VVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVK 421 (681)
Q Consensus 351 ~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 421 (681)
..+.| +.+--.+.+.+...|+++.|++ .++.+.+.+..--..+...|..+|...|+.++....+..+.+.
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~-~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVE-ALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHH-HHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 55422 2233334455555566666655 4455554433323344455555566666666665555555544
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=7.2e-12 Score=124.14 Aligned_cols=277 Identities=15% Similarity=0.119 Sum_probs=223.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCC------CChHHHHHHHHHHHhcCCHHHHHH
Q 040136 304 NRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPS------ANVVLLNTVINGYVISGRFDEAKA 377 (681)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~ 377 (681)
=+..+|...|.....+ +.-...+...+..+|...+++++|+++|+.+.+ .+..+|.+.+..+-+. -++.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence 3678999999995544 333346778899999999999999999999877 6677888888766433 2333
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 378 IFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEP-NIVTYTILVDGFCKEGQLEKANIIINEMLAK 456 (681)
Q Consensus 378 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 456 (681)
.+-+.+.+. .+-.+.+|.++.++|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+..
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 233444443 2446789999999999999999999999999876 44 6788888888888888999999988887664
Q ss_pred CCCCCccccHHHHHHHHHHHHhcCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 040136 457 GLSLNTGDRIEEALGLYQDMLLEGVTANTVTYN---TLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNA 533 (681)
Q Consensus 457 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 533 (681)
|+..|+ .+...|.+.++++.|+-.|+++.+.+ |-+......++..+.+.
T Consensus 485 ---------------------------~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~ 536 (638)
T KOG1126|consen 485 ---------------------------DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQL 536 (638)
T ss_pred ---------------------------CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHh
Confidence 555555 46778999999999999999999885 66888888999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 040136 534 GAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTP-DIVTYNSLINGLCKMGCIQEALNL 612 (681)
Q Consensus 534 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 612 (681)
|+.|+|+++++++.....+ |+..--..+..+...+++++|+..++++++. .| +...+..+...|.+.|+.+.|+.-
T Consensus 537 k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~ 613 (638)
T KOG1126|consen 537 KRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLH 613 (638)
T ss_pred hhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHh
Confidence 9999999999999987655 4444445677788899999999999999984 55 457788889999999999999999
Q ss_pred HHHHHHC
Q 040136 613 FDKLQAE 619 (681)
Q Consensus 613 ~~~~~~~ 619 (681)
|--+.+.
T Consensus 614 f~~A~~l 620 (638)
T KOG1126|consen 614 FSWALDL 620 (638)
T ss_pred hHHHhcC
Confidence 9999885
No 54
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.49 E-value=3.8e-10 Score=115.15 Aligned_cols=450 Identities=16% Similarity=0.136 Sum_probs=231.4
Q ss_pred hcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhh
Q 040136 178 VYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVV 257 (681)
Q Consensus 178 ~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 257 (681)
..|..|+..+|..+|.-|+..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+. .|-..+
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt 85 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADT 85 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence 4566677777777777777777777666 6666666655556666777776666666666554 355667
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH-HH-------HCC-----------------CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040136 258 YQTLIHALSKSNRVSEALMLLEE-MI-------LMG-----------------CTSDVQTFNDVIHGLCKVNRIHEAAKL 312 (681)
Q Consensus 258 ~~~li~~~~~~~~~~~A~~~~~~-m~-------~~~-----------------~~~~~~~~~~li~~~~~~~~~~~a~~~ 312 (681)
|..|..+|...|+... ++..++ |. ..| .-||. ..++....-.|-++.++++
T Consensus 86 yt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred HHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHHHHHHHHHHH
Confidence 7777777777776543 111111 11 111 11111 1222333334445555554
Q ss_pred HHHHHHCCCCCCcccHHHHHHHHH-hcCCHHHHHHHHhhcCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC
Q 040136 313 VDRMLVRGFTPDDITYGVLMHGLC-RTGRVDEARALLNKIPS-ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIP 390 (681)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 390 (681)
+..+-..... . ....+++-+. ....+++-..+.....+ +++.++..++..-..+|+.+.|.. +...|.+.|.+.
T Consensus 162 l~~~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~-ll~emke~gfpi 237 (1088)
T KOG4318|consen 162 LAKVPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKN-LLYEMKEKGFPI 237 (1088)
T ss_pred HhhCCccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHH-HHHHHHHcCCCc
Confidence 4443211100 0 1111122222 22334544455444444 777777777777777777777777 677777777777
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHH-----------HHHHHHHCCCC
Q 040136 391 DVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANI-----------IINEMLAKGLS 459 (681)
Q Consensus 391 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~-----------~~~~~~~~~~~ 459 (681)
+..-|-.++-+ .++...+..+++.|.+.|+.|+..|+...+..+..+|....+.. +...+......
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a 314 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLA 314 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHh
Confidence 76655555543 67777777777777777777777777766665555443222111 11111110000
Q ss_pred CCc--cccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcC
Q 040136 460 LNT--GDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRG---CPLDEITYNGLIKALCNAG 534 (681)
Q Consensus 460 ~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g 534 (681)
... .....-....+.+..-.|......+|...+. ....|.-++..++...+..-- .+.+...|..++.-|.+.-
T Consensus 315 ~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~ 393 (1088)
T KOG4318|consen 315 NKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRI 393 (1088)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHH
Confidence 000 0011111122222222233333334433333 223555555555555443211 1112333333333332211
Q ss_pred ----------------------CHHHHHHHHHHHHHC----------------CCCC-------CHHHHHHHHHHHHhcC
Q 040136 535 ----------------------AVDKGLGLFEEMMRK----------------GIKP-------SSISCNILINGLCRTR 569 (681)
Q Consensus 535 ----------------------~~~~A~~~~~~~~~~----------------~~~p-------~~~~~~~l~~~~~~~g 569 (681)
+..+..+........ .+.| -...-+.++..++..-
T Consensus 394 e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~ 473 (1088)
T KOG4318|consen 394 ERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEY 473 (1088)
T ss_pred HhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 111111111111000 0000 0122244555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 040136 570 KANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE--GIYPDAVTYNTLISWHFKEGLFDDAFLI 647 (681)
Q Consensus 570 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 647 (681)
+..+++..-++....-+ + ..|..|++-+......+.|..+.++.... .+..|..-+..+.+.+.+.+...++..+
T Consensus 474 n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~ti 550 (1088)
T KOG4318|consen 474 NKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTI 550 (1088)
T ss_pred HHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHH
Confidence 55555554444433211 1 56788888888888888888888887654 2344556677888888899999999999
Q ss_pred HHHHHHC
Q 040136 648 LHKGVAN 654 (681)
Q Consensus 648 ~~~~~~~ 654 (681)
++++.+.
T Consensus 551 L~e~ks~ 557 (1088)
T KOG4318|consen 551 LYEDKSS 557 (1088)
T ss_pred HhhhhHH
Confidence 8888763
No 55
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=4.2e-10 Score=107.33 Aligned_cols=209 Identities=13% Similarity=0.098 Sum_probs=161.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 040136 438 CKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCP 517 (681)
Q Consensus 438 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 517 (681)
.-.|+.-.|..-|+..++... . +...|-.+..+|....+.++..+.|++....+ |
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~-----------------------~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p 391 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDP-----------------------A-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-P 391 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCc-----------------------c-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-C
Confidence 335666666666666666532 2 33337778888999999999999999999885 6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 518 LDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLI 597 (681)
Q Consensus 518 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 597 (681)
-|+.+|..=...+.-.+++++|..-|++.++.... +...|-.+..+..+.+++++++..|++.+.+ ++--+..|+-..
T Consensus 392 ~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fA 469 (606)
T KOG0547|consen 392 ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFA 469 (606)
T ss_pred CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHH
Confidence 68888888888888899999999999999986433 5677777778888999999999999999986 665678999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-------H--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 040136 598 NGLCKMGCIQEALNLFDKLQAEGIYPD-------A--VTYNTLISWHFKEGLFDDAFLILHKGVANGFVPND-ATWYILV 667 (681)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~ll 667 (681)
+.+...++++.|.+.|+..++. .|. . .+.-.++-.- -.++++.|..++.++.+ +.|.. ..+..|.
T Consensus 470 eiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tla 544 (606)
T KOG0547|consen 470 EILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLA 544 (606)
T ss_pred HHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHH
Confidence 9999999999999999999984 444 1 1222222222 33899999999999998 55654 5566777
Q ss_pred HHHHhcCcccc
Q 040136 668 RNLVKEINMES 678 (681)
Q Consensus 668 ~~~~~~g~~~~ 678 (681)
..-...|+.++
T Consensus 545 q~~lQ~~~i~e 555 (606)
T KOG0547|consen 545 QFELQRGKIDE 555 (606)
T ss_pred HHHHHHhhHHH
Confidence 77777776654
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=2e-10 Score=103.82 Aligned_cols=296 Identities=16% Similarity=0.141 Sum_probs=191.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCC-CChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040136 303 VNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPS-ANVVLLNTVINGYVISGRFDEAKAIFYD 381 (681)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 381 (681)
.++.++|.++|-+|.+.. +-...+..+|.+.|-+.|..|.|+.+...+.. ||. ++..
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdl-T~~q-------------------- 105 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDL-TFEQ-------------------- 105 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCC-chHH--------------------
Confidence 456777777777777641 11233445666666777777777766555433 221 0000
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040136 382 SMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLN 461 (681)
Q Consensus 382 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 461 (681)
-....-.|..-|...|-+|.|+.+|..+.+.+ .--......|+..|-+..+|++|+++-+++.+.+....
T Consensus 106 ---------r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~ 175 (389)
T COG2956 106 ---------RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY 175 (389)
T ss_pred ---------HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc
Confidence 01122334555666777777777777766543 22344566677777777777777777666665532110
Q ss_pred ccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040136 462 TGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLG 541 (681)
Q Consensus 462 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 541 (681)
. ..-...|..+...+....+.+.|..++.+..+.+ +....+-..+.+.....|+++.|++
T Consensus 176 ~-------------------~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~ 235 (389)
T COG2956 176 R-------------------VEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVE 235 (389)
T ss_pred h-------------------hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHH
Confidence 0 0012345556666667788888899888888774 4455566667788888999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040136 542 LFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGI 621 (681)
Q Consensus 542 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 621 (681)
.|+.+.+.+..--..+...|..+|...|+.++...++.++.+.. +....-..+.+.-....-.+.|...+.+-+..
T Consensus 236 ~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r-- 311 (389)
T COG2956 236 ALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR-- 311 (389)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--
Confidence 99999988655556778888999999999999999999988853 33334444444444444456666666555553
Q ss_pred CCCHHHHHHHHHHHHh---cCChhHHHHHHHHHHHC
Q 040136 622 YPDAVTYNTLISWHFK---EGLFDDAFLILHKGVAN 654 (681)
Q Consensus 622 ~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~ 654 (681)
.|+...+..+++.... .|++.+.+..+++|+..
T Consensus 312 ~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 312 KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 8899888888887643 45677788888888764
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.48 E-value=2e-09 Score=100.70 Aligned_cols=282 Identities=13% Similarity=0.099 Sum_probs=165.6
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 040136 268 SNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARAL 347 (681)
Q Consensus 268 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 347 (681)
.|++.+|++++.+-.+.+ +-....|..-+.+....|+.+.+-.++.++.+..-.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 678888888888877766 2334556666677777888888888888877653344555666667777777887777776
Q ss_pred HhhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCChhHHHHHHHH
Q 040136 348 LNKIPS---ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVF-------TFNILIHGLCKQRRFGSALELVNA 417 (681)
Q Consensus 348 ~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-------~~~~ll~~~~~~~~~~~A~~~~~~ 417 (681)
++++.. .++........+|.+.|++.+... +...+.+.+.-.|.. +|..++.-....+..+.-...++.
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~-~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLA-ILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHH-HHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 665544 556666667777777777777777 667777766554442 334444433333333333334444
Q ss_pred HHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 040136 418 MAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLR 497 (681)
Q Consensus 418 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 497 (681)
.... .+-++..-..++.-+.++|+.++|.++..+..+++. |.. . ...-.+.+
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~-------------------------D~~-L-~~~~~~l~ 306 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW-------------------------DPR-L-CRLIPRLR 306 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc-------------------------Chh-H-HHHHhhcC
Confidence 3322 223444445555556666666666666665555431 111 1 11112344
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040136 498 RGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEF 577 (681)
Q Consensus 498 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 577 (681)
.++...-++..++..+. .+.++..+.+|+..|.+.+.+.+|...|+..++. .|+..+|+.+.+++.+.|+..+|.++
T Consensus 307 ~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~ 383 (400)
T COG3071 307 PGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQV 383 (400)
T ss_pred CCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHH
Confidence 45555555555554444 2444455666666666666666666666655553 45666666666666666666666666
Q ss_pred HHHHH
Q 040136 578 LRDMI 582 (681)
Q Consensus 578 ~~~~~ 582 (681)
.++.+
T Consensus 384 r~e~L 388 (400)
T COG3071 384 RREAL 388 (400)
T ss_pred HHHHH
Confidence 65554
No 58
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.48 E-value=1.2e-08 Score=101.17 Aligned_cols=460 Identities=15% Similarity=0.110 Sum_probs=234.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 040136 151 LFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKAL 230 (681)
Q Consensus 151 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 230 (681)
.|..+++.| ..+++...+++.+.+...+ +....+.....-.+...|+-++|......-++.++. +.+.|.++.-.+
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHH
Confidence 344555555 5566666666666666322 233333333333445566677777766666665433 455666665555
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040136 231 CMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAA 310 (681)
Q Consensus 231 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 310 (681)
....++++|++.|......+ +.|...+.-+.-.-++.++++.....-..+.+.. +.....|..++.++.-.|++..|.
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777665 5556666666666666666666666555555432 334556666666777777777777
Q ss_pred HHHHHHHHCC-CCCCcccHHHHH------HHHHhcCCHHHHHHHHhhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHH
Q 040136 311 KLVDRMLVRG-FTPDDITYGVLM------HGLCRTGRVDEARALLNKIPS---ANVVLLNTVINGYVISGRFDEAKAIFY 380 (681)
Q Consensus 311 ~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~ 380 (681)
.++++..+.. ..|+...+.... ....+.|..++|.+.+..... .....--+-...+.+.++.++|.. ++
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~-~y 242 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVK-VY 242 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHH-HH
Confidence 7777776543 234444443222 233455666666666555443 112222333455666777777777 55
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHH-hcCChhHHH-HHHHHHHhcCCCcCHhh-HHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040136 381 DSMLSVGCIPDVFTFNILIHGLC-KQRRFGSAL-ELVNAMAVKGCEPNIVT-YTILVDGFCKEGQLEKANIIINEMLAKG 457 (681)
Q Consensus 381 ~~~~~~~~~p~~~~~~~ll~~~~-~~~~~~~A~-~~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 457 (681)
..+... .||...|...+..+. +..+.-++. .+|....+. .|.... -..=+.......-.+....++...+++|
T Consensus 243 ~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 243 RRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 555543 355555544443333 233333333 444433332 111000 0000111111111222233344444443
Q ss_pred CCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------------CCCCCHHHH
Q 040136 458 LSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFR--------------GCPLDEITY 523 (681)
Q Consensus 458 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------------~~~~~~~~~ 523 (681)
+++ ++..+...|-.....+-..++...+... --+|....|
T Consensus 319 ~p~--------------------------vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllW 372 (700)
T KOG1156|consen 319 VPS--------------------------VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLW 372 (700)
T ss_pred CCc--------------------------hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHH
Confidence 321 1222222221111111111111111100 014555444
Q ss_pred H--HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 524 N--GLIKALCNAGAVDKGLGLFEEMMRKGIKPSS-ISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGL 600 (681)
Q Consensus 524 ~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 600 (681)
. .+...+-+.|+++.|..+.+.++.. .|+. ..|..=.+.+...|++++|..++++..+.+ .+|...-..-..-.
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHH
Confidence 3 3455566777777777777777764 3442 445555667777777777777777777653 34544433555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH--------HHHH--HHHHHHhcCChhHHHHHHHHHH
Q 040136 601 CKMGCIQEALNLFDKLQAEGIYPDAV--------TYNT--LISWHFKEGLFDDAFLILHKGV 652 (681)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~~~~~p~~~--------~~~~--l~~~~~~~g~~~~A~~~~~~~~ 652 (681)
.++++.++|.++.....+.|. +.. .|.. -+.+|.+.|++-+|++=|..+.
T Consensus 450 LrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 677777777777777776653 211 2222 2245666677666665444433
No 59
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=9e-10 Score=100.69 Aligned_cols=157 Identities=12% Similarity=0.033 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040136 501 LHEAHKLVNDMLFRGCPLD-EITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLR 579 (681)
Q Consensus 501 ~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 579 (681)
..-|.+.|...-+.+..-| ..-..++...+.-..++++.+.+++.+...-...|...+ .+..+++..|++.+|.++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHh
Confidence 4556666665555443333 233456666677777889999988888876544455554 46788999999999999998
Q ss_pred HHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHHCCCC
Q 040136 580 DMIHRGLTPDIVTYN-SLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNT-LISWHFKEGLFDDAFLILHKGVANGFV 657 (681)
Q Consensus 580 ~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~g~~ 657 (681)
++....++ |..+|. .|..+|.+.+..+.|..++-++-. +.+..+... +..-|.+.+.+--|-+.|+.+.. ..
T Consensus 418 ~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lD 491 (557)
T KOG3785|consen 418 RISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LD 491 (557)
T ss_pred hhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cC
Confidence 87765444 445554 566788899999988877765542 334444444 44668899998888888888876 56
Q ss_pred CCHHHHH
Q 040136 658 PNDATWY 664 (681)
Q Consensus 658 ~~~~~~~ 664 (681)
|++..|.
T Consensus 492 P~pEnWe 498 (557)
T KOG3785|consen 492 PTPENWE 498 (557)
T ss_pred CCccccC
Confidence 8877775
No 60
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=7.9e-10 Score=103.32 Aligned_cols=186 Identities=13% Similarity=0.141 Sum_probs=126.7
Q ss_pred HHHHHHH--hcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 040136 190 VVLDVLV--AGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSK 267 (681)
Q Consensus 190 ~ll~~~~--~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 267 (681)
.+..++. -.|++.+|.+...+-.+.+..| ...|..-..+--..|+.+.+-.++.++.+.--.++...+-+..+....
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 3444443 4688999999988877766443 345666677777889999999999998886335667777788888888
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc-------cHHHHHHHHHhcCC
Q 040136 268 SNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDI-------TYGVLMHGLCRTGR 340 (681)
Q Consensus 268 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~ 340 (681)
.|+++.|..-+.++.+.+ +.+.........+|.+.|++.....++..+.+.|.--|.. +|..+++-....+.
T Consensus 166 ~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 166 RRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred CCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999998888888876 5567778888899999999999999999999887654432 34444444444444
Q ss_pred HHHHHHHHhhcCC---CChHHHHHHHHHHHhcCCHHHHHH
Q 040136 341 VDEARALLNKIPS---ANVVLLNTVINGYVISGRFDEAKA 377 (681)
Q Consensus 341 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~ 377 (681)
.+.-...++..+. .++..-..++.-+.+.|+.++|.+
T Consensus 245 ~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~ 284 (400)
T COG3071 245 SEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQE 284 (400)
T ss_pred chHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHH
Confidence 4444444444443 334444444444444444444444
No 61
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.45 E-value=2.1e-08 Score=99.53 Aligned_cols=469 Identities=12% Similarity=0.050 Sum_probs=236.2
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 040136 91 PLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATR 170 (681)
Q Consensus 91 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 170 (681)
.+.+...+.+.+......+ -..++.....-.+...|+-++|..........++. +...|-.+.-.+....++++|++
T Consensus 20 ~kQYkkgLK~~~~iL~k~~--eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFP--EHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHhHHHHHHHHHHhCC--ccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHH
Confidence 4556666666666555332 33333333333455556666666666665555442 44455555555555566666666
Q ss_pred HHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 040136 171 LLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHG 250 (681)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 250 (681)
.|.... ..+ +.|...|.-+.-.-++.++++.....-.++++.. +-....|..+..+..-.|+...|..+++...+..
T Consensus 97 cy~nAl-~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 97 CYRNAL-KIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHH-hcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666655 222 4445555544444455555555555555555542 1123345555555555566666666665555432
Q ss_pred -CCCChhhHHHHHHH------HHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040136 251 -CVPNSVVYQTLIHA------LSKSNRVSEALMLLEEMILMGCTSDVQT-FNDVIHGLCKVNRIHEAAKLVDRMLVRGFT 322 (681)
Q Consensus 251 -~~~~~~~~~~li~~------~~~~~~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 322 (681)
-.|+...+.-.... ..+.|..+.|++.+..-... ..|... -..-...+.+.+++++|..++..++.. .
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--n 249 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--N 249 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--C
Confidence 12444444332222 22344445554444433221 112221 122333444555555555555555544 3
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHH-HHHH
Q 040136 323 PDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNI-LIHG 401 (681)
Q Consensus 323 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-ll~~ 401 (681)
||...|..... .++.+-.+.-+++..++....+.- |-...-.. =+..
T Consensus 250 Pdn~~Yy~~l~------------------------------~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsv 297 (700)
T KOG1156|consen 250 PDNLDYYEGLE------------------------------KALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSV 297 (700)
T ss_pred chhHHHHHHHH------------------------------HHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHH
Confidence 33333332222 222222223333322444333321 11100000 0111
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCccccHHHHHHHHHHHHh
Q 040136 402 LCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLA---KGLSLNTGDRIEEALGLYQDMLL 478 (681)
Q Consensus 402 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~a~~~~~~~~~ 478 (681)
.....-.+..-.++..+.+.|+++ ++..+...|-.-...+ +++++.. .+..........+.-
T Consensus 298 l~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~-------- 362 (700)
T KOG1156|consen 298 LNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDG-------- 362 (700)
T ss_pred hCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCCccccc--------
Confidence 111222334445566666667554 2333333332211111 2222211 111111000000000
Q ss_pred cCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 040136 479 EGVTANTVT--YNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSI 556 (681)
Q Consensus 479 ~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 556 (681)
..-+|.+.. +--++..|-+.|+++.|...++..+.+ .|.-...|..=...+...|++++|..++++..+.+ .+|..
T Consensus 363 ~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH-TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~ 440 (700)
T KOG1156|consen 363 KQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH-TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRA 440 (700)
T ss_pred ccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHH
Confidence 001445544 455778889999999999999999987 23334455556688899999999999999999875 34665
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HHHHHHH--HHHHHhcCCHHHHHHHHHHHHH
Q 040136 557 SCNILINGLCRTRKANTALEFLRDMIHRGLT--PD----IVTYNSL--INGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~----~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
.-.--+....++.+.++|.++.......|.. -+ .-+|-.+ ..+|.+.|++..|++-|..+.+
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 5556677778899999999999998887641 01 1223332 4567788888888776665544
No 62
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=2.7e-08 Score=91.30 Aligned_cols=449 Identities=10% Similarity=0.027 Sum_probs=243.1
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 040136 91 PLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATR 170 (681)
Q Consensus 91 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 170 (681)
++|+.-|..+++.... .+-.-...+-.++..++.+.|++++|...+.-+.+..- ++...+..|.-++.-.|.+.+|..
T Consensus 35 ~rDytGAislLefk~~-~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~-~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLN-LDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDD-APAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred cccchhHHHHHHHhhc-cchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCC-CCcccchhHHHHHHHHHHHHHHHH
Confidence 4699999999988543 23233345566777888999999999999998877553 566777788888888899999988
Q ss_pred HHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 040136 171 LLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHG 250 (681)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 250 (681)
+-.... .++..-..+...-.+.|+-++-..+-+.+.+. ..--.+|.......-.+++|++++..+...+
T Consensus 113 ~~~ka~------k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 113 IAEKAP------KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHhhCC------CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 876554 34444455566666777776666665554432 2223344444444556889999999988765
Q ss_pred CCCChhhHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHH
Q 040136 251 CVPNSVVYQTL-IHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYG 329 (681)
Q Consensus 251 ~~~~~~~~~~l-i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 329 (681)
|+-...|.. .-+|.+..-++-+.++++-..+. ++.+..+.|..+....+.=.-..|++-...+...+-. .|
T Consensus 182 --~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~----~~- 253 (557)
T KOG3785|consen 182 --PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ----EY- 253 (557)
T ss_pred --hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc----cc-
Confidence 555555543 34567777788888888877765 2334555555554444433333344444444433211 01
Q ss_pred HHHHHHHhcC-----CHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-
Q 040136 330 VLMHGLCRTG-----RVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLC- 403 (681)
Q Consensus 330 ~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~- 403 (681)
-.+.-+++.+ .-+.|++++-.+...-+.+.-.|+--|.+.++..+|.. +.+.+. ...|-......+..+-.
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~-L~Kdl~--PttP~EyilKgvv~aalG 330 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAIS-LCKDLD--PTTPYEYILKGVVFAALG 330 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHH-HHhhcC--CCChHHHHHHHHHHHHhh
Confidence 1222223322 23555665554444334444555556777777777777 433221 11122222222221111
Q ss_pred ----hcCChhHHHHHHHHHHhcCCCcCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHh
Q 040136 404 ----KQRRFGSALELVNAMAVKGCEPNI-VTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLL 478 (681)
Q Consensus 404 ----~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 478 (681)
....+.-|.+.|+..-+.+..-|. .--..+...+.-..++++.+..++.+..-
T Consensus 331 Qe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY---------------------- 388 (557)
T KOG3785|consen 331 QETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY---------------------- 388 (557)
T ss_pred hhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 111233444555444444333222 12233333333444455554444443332
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-H
Q 040136 479 EGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNG-LIKALCNAGAVDKGLGLFEEMMRKGIKPSS-I 556 (681)
Q Consensus 479 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~ 556 (681)
-.. |...-..+..+++..|++.+|.++|-.+....+. |..+|.+ |..+|.+.+.++.|+.++-.+-.. .+. .
T Consensus 389 -F~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~---~e~fs 462 (557)
T KOG3785|consen 389 -FTN-DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTP---SERFS 462 (557)
T ss_pred -hcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc---hhHHH
Confidence 111 2222233556666677777777776655443322 3444433 345566666666666554433221 122 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 040136 557 SCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTY 593 (681)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 593 (681)
....+.+-|.+.+.+--|-+.|+.+.. ..|++..|
T Consensus 463 LLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 463 LLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 233444556666666666666665554 34555444
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=4.1e-11 Score=108.09 Aligned_cols=233 Identities=12% Similarity=0.072 Sum_probs=185.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHH
Q 040136 396 NILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQD 475 (681)
Q Consensus 396 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 475 (681)
+.+.++|.+.|.+.+|.+.++..+++ .|-+.+|-.|-..|.+..++..|+.++.+.++.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~------------------- 285 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS------------------- 285 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-------------------
Confidence 56778888888888888888888776 566777888888888888888888888887765
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 040136 476 MLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSS 555 (681)
Q Consensus 476 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 555 (681)
++-|+.....+...+-..++.++|.++|+...+.. +.+.....++...|...++++-|+.+|+++++.|+. +.
T Consensus 286 -----fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-sp 358 (478)
T KOG1129|consen 286 -----FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SP 358 (478)
T ss_pred -----CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-Ch
Confidence 12244444456677778888999999999988874 667777778888888889999999999999998876 88
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 556 ISCNILINGLCRTRKANTALEFLRDMIHRGLTPD--IVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLIS 633 (681)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 633 (681)
..|+.+.-+|...++++-++.-|++.+..-..|+ ..+|-.+.......||+..|.+.|+-....+ .-+...++.|.-
T Consensus 359 eLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLav 437 (478)
T KOG1129|consen 359 ELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAV 437 (478)
T ss_pred HHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHH
Confidence 8888888888889999999999988887544444 3668788888888999999999999888763 334678888888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCC
Q 040136 634 WHFKEGLFDDAFLILHKGVANGFVPN 659 (681)
Q Consensus 634 ~~~~~g~~~~A~~~~~~~~~~g~~~~ 659 (681)
.-.+.|+.++|..++..+.. ..|+
T Consensus 438 L~~r~G~i~~Arsll~~A~s--~~P~ 461 (478)
T KOG1129|consen 438 LAARSGDILGARSLLNAAKS--VMPD 461 (478)
T ss_pred HHhhcCchHHHHHHHHHhhh--hCcc
Confidence 88899999999999988876 4454
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.2e-08 Score=93.73 Aligned_cols=274 Identities=16% Similarity=0.114 Sum_probs=183.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------
Q 040136 389 IPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPN-IVTYTILVDGFCKEGQLEKANIIINEMLAKG---------- 457 (681)
Q Consensus 389 ~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---------- 457 (681)
+-|......+...+...|+.+.|...|++.... .|+ +.......-.+.+.|+++....+...+....
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~ 306 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVH 306 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence 334445555555555555555555555554433 121 1111111222334444444444444433321
Q ss_pred -CCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 040136 458 -LSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAV 536 (681)
Q Consensus 458 -~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 536 (681)
.......+.+.|+.+-.+.++.... +...|..-..++...|++++|.-.|+..+... |-+...|..|+.+|...|.+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 1111144555555555555554322 55566666678889999999999999988763 56889999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHH
Q 040136 537 DKGLGLFEEMMRKGIKPSSISCNILI-NGLCR-TRKANTALEFLRDMIHRGLTPDI-VTYNSLINGLCKMGCIQEALNLF 613 (681)
Q Consensus 537 ~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 613 (681)
.+|..+-+...+. +..+..+.+.+. ..+.. -..-++|.+++++.+. +.|+. ...+.+...|...|..++++.++
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 9999888877765 344666666653 33332 2335789999998876 46764 56778888899999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 614 DKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKE 673 (681)
Q Consensus 614 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 673 (681)
++... ..||....+.|.+.+...+.+++|...|..+++ +.|+......=++.+-|+
T Consensus 462 e~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~~sl~Gl~~lEK~ 517 (564)
T KOG1174|consen 462 EKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKSKRTLRGLRLLEKS 517 (564)
T ss_pred HHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccchHHHHHHHHHHhc
Confidence 99998 489999999999999999999999999999997 567765544444444444
No 65
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.36 E-value=5.3e-08 Score=99.48 Aligned_cols=50 Identities=20% Similarity=0.159 Sum_probs=39.7
Q ss_pred HHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 040136 600 LCKMG-CIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHK 650 (681)
Q Consensus 600 ~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 650 (681)
+.+.. =+++|.++++-+.+.+ ..+..+|..-...|.+.|++--|++.+.+
T Consensus 466 L~~t~dPLe~A~kfl~pL~~~a-~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 466 LLKTEDPLEEAMKFLKPLLELA-PDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HhcCCcHHHHHHHHHHHHHHhC-ccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 33444 4688999999999863 44677999999999999999999887765
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=4.8e-07 Score=85.07 Aligned_cols=196 Identities=15% Similarity=0.118 Sum_probs=139.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHH
Q 040136 398 LIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDML 477 (681)
Q Consensus 398 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 477 (681)
-+......+++..|+.+-++..+.. +-++..|-.-...+...++.++|.-.|+......
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-------------------- 364 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-------------------- 364 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc--------------------
Confidence 3344456677888888877777653 2244555555566777888888888887776542
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHHCCCCCCH
Q 040136 478 LEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLI-KALCN-AGAVDKGLGLFEEMMRKGIKPSS 555 (681)
Q Consensus 478 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~p~~ 555 (681)
+-+..+|..|+++|...|+..+|..+-+..... .+.+..+...+. ..+.- ..--++|..+++..++. .|+.
T Consensus 365 ----p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y 437 (564)
T KOG1174|consen 365 ----PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIY 437 (564)
T ss_pred ----hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCcc
Confidence 226678888888888888888888777776655 355666665553 22221 22247788888877764 4543
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 040136 556 -ISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDA 625 (681)
Q Consensus 556 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 625 (681)
...+.+...+...|+.++++.++++.+. ..||....+.|.+.+...+.+++|...|..+.. +.|+.
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 4556777888888999999999998886 468888888999999999999999999988887 45654
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=1.3e-09 Score=102.82 Aligned_cols=200 Identities=16% Similarity=0.119 Sum_probs=148.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040136 427 IVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHK 506 (681)
Q Consensus 427 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 506 (681)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~------------------------p~~~~~~~~la~~~~~~~~~~~A~~ 86 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD------------------------PDDYLAYLALALYYQQLGELEKAED 86 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 4556666777777888888877777766542 2245667777778888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040136 507 LVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGI-KPSSISCNILINGLCRTRKANTALEFLRDMIHRG 585 (681)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 585 (681)
.+++..+.. +.+...+..+...+...|++++|...++++.+... ......+..+...+...|++++|.+.+++..+..
T Consensus 87 ~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 87 SFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888877763 45666777778888888888888888888876422 2234566677788888888888888888888752
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 586 LTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 586 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
+.+...+..+...+...|++++|...++++.+. .+.+...+..++..+...|+.++|..+.+.+.+
T Consensus 166 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 166 -PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred -cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 234567777888888888898888888888875 244556666777888888888888888877765
No 68
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.34 E-value=3.6e-08 Score=99.88 Aligned_cols=448 Identities=13% Similarity=0.037 Sum_probs=226.0
Q ss_pred CCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhH
Q 040136 109 GYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSY 188 (681)
Q Consensus 109 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 188 (681)
.+..++..|..+.-++.+.|++..+-+.|++....-+ .....|..+...|..+|.-..|..+++.-......++++..+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 3445677777777777777777777777777765443 255667777777777777777777776654222112233333
Q ss_pred HHHHHHHH-hcCCcCcHHHHHHHHHHC--CC--CCChhhHHHHHHHHHhc-----------CChhHHHHHHHHHHhCCCC
Q 040136 189 NVVLDVLV-AGNCHKVAPNLFYDMLSK--GI--SPTVYTFGVVMKALCMV-----------NEVDSACSLLRDMTKHGCV 252 (681)
Q Consensus 189 ~~ll~~~~-~~~~~~~A~~~~~~m~~~--~~--~p~~~~~~~ll~~~~~~-----------g~~~~A~~~~~~~~~~~~~ 252 (681)
-..-..|. +.+..++++.+-.+.+.. +. ......|..+.-+|... -...++.+.+++..+.+ +
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~ 475 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-P 475 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-C
Confidence 33333333 345666666666665552 11 11222333333333211 12345666666666654 2
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHH
Q 040136 253 PNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLM 332 (681)
Q Consensus 253 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 332 (681)
.|+.+.-.+.--|+..++.+.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+.....- .-|-.....-+
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~ 554 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKI 554 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhh
Confidence 33333333444566677777777777777776545667777777777777777777777777666431 11111122222
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 040136 333 HGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSAL 412 (681)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~ 412 (681)
+.-..-++.++++.....+.. .|... ......++-....+ ....+.-. + ++..+
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~----~we~~-~~~q~~~~~g~~~~-lk~~l~la---~---------------~q~~~-- 608 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLA----LWEAE-YGVQQTLDEGKLLR-LKAGLHLA---L---------------SQPTD-- 608 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHH----HHHhh-hhHhhhhhhhhhhh-hhcccccC---c---------------ccccc--
Confidence 223334555555554433221 00000 00000011001111 10000000 0 00000
Q ss_pred HHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 040136 413 ELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLI 492 (681)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 492 (681)
.+.++..+.......+ +.+..-.. +......+.....+.. ....|....
T Consensus 609 -------------a~s~sr~ls~l~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~---------------~~~lwllaa 657 (799)
T KOG4162|consen 609 -------------AISTSRYLSSLVASQL--KSAGSELK-LPSSTVLPGPDSLWYL---------------LQKLWLLAA 657 (799)
T ss_pred -------------cchhhHHHHHHHHhhh--hhcccccc-cCcccccCCCCchHHH---------------HHHHHHHHH
Confidence 1111111111111000 00000000 0000000000000000 022344455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 040136 493 HAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKAN 572 (681)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 572 (681)
..+.+.+..++|.-.+.+.... .+..+..|......+...|...+|.+.|..+...++. ++.+..++..++.+.|+..
T Consensus 658 ~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~ 735 (799)
T KOG4162|consen 658 DLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPR 735 (799)
T ss_pred HHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcc
Confidence 5566666777776666666555 3556666666666777777777777777777765322 4456667777777777766
Q ss_pred HHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 573 TALE--FLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 573 ~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
-|.. ++.++.+.+ +.+...|-.+...+.+.|+.+.|.+.|....+.
T Consensus 736 la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 736 LAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 6666 777777653 335677777777777777777777777777664
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=1.2e-07 Score=93.15 Aligned_cols=124 Identities=13% Similarity=0.044 Sum_probs=80.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 040136 154 LIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMV 233 (681)
Q Consensus 154 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 233 (681)
.=++.+...|++++|.+...++. .. .+.+...+..-+-++++.+.+++|+.+.+.-... ..+..-+---..+..+.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil-~~-~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKIL-SI-VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHH-hc-CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHc
Confidence 34566778888888888888888 33 3666777778888888888888888554432211 11111111112333477
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 040136 234 NEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMG 285 (681)
Q Consensus 234 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 285 (681)
+..|+|...+.-..+ .+..+...-...+.+.|++++|+++|+.+.+.+
T Consensus 93 nk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred ccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 888888888872221 223355556677788888888888888887765
No 70
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.32 E-value=1.3e-08 Score=103.89 Aligned_cols=287 Identities=14% Similarity=0.121 Sum_probs=200.3
Q ss_pred HHhcCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC--
Q 040136 86 KLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGG-- 163 (681)
Q Consensus 86 ~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 163 (681)
.++...|++++|++++..... -+......+...+..+.+.|+.++|..++..+++.++ .+...|..+..+.+-..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhccc
Confidence 466778999999999977332 3445566778888999999999999999999999996 36666667777663332
Q ss_pred ---ChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCc-CcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHH
Q 040136 164 ---VPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCH-KVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSA 239 (681)
Q Consensus 164 ---~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A 239 (681)
..+...++|+.+...+ |.......+.-.+.....+ ..+...+..++..|+++ +|..+-..|......+-.
T Consensus 89 ~~~~~~~~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred ccccHHHHHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 5677788888887432 3222222221111221222 34556677778888763 556665556544555555
Q ss_pred HHHHHHHHhC----C----------CCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 240 CSLLRDMTKH----G----------CVPNS--VVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKV 303 (681)
Q Consensus 240 ~~~~~~~~~~----~----------~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 303 (681)
.+++..+... + -+|.. .++..+...|-..|++++|++.+++.++.. +..+..|..-...+-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHC
Confidence 5555555432 1 12444 344566777889999999999999999874 33477888888999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChH----------HH--HHHHHHHHhcCC
Q 040136 304 NRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVV----------LL--NTVINGYVISGR 371 (681)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~--~~l~~~~~~~g~ 371 (681)
|++++|.+.++........ |...-+..+..+.+.|++++|.+++......+.. .| .....+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999877433 6667777888889999999999999888774411 22 344678889999
Q ss_pred HHHHHHHHHHHHH
Q 040136 372 FDEAKAIFYDSML 384 (681)
Q Consensus 372 ~~~a~~~~~~~~~ 384 (681)
+..|++ .+..+.
T Consensus 321 ~~~ALk-~~~~v~ 332 (517)
T PF12569_consen 321 YGLALK-RFHAVL 332 (517)
T ss_pred HHHHHH-HHHHHH
Confidence 999888 444443
No 71
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.32 E-value=1.2e-07 Score=96.12 Aligned_cols=131 Identities=14% Similarity=-0.008 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 040136 520 EITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPD-IVTYNSLIN 598 (681)
Q Consensus 520 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 598 (681)
...|......+.+.+..++|...+.++.+.. .-....|......+...|..++|.+.|...... .|+ .....++..
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHH
Confidence 3456667778888899999998888887753 335677888888899999999999999998874 554 577889999
Q ss_pred HHHhcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040136 599 GLCKMGCIQEALN--LFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 599 ~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
++.+.|+..-|.. ++..+.+.+ +.+...|..+...+.+.|+.++|.+.|..+.+.
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 9999998888877 999999864 556889999999999999999999999999873
No 72
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=3.6e-07 Score=95.06 Aligned_cols=549 Identities=13% Similarity=0.145 Sum_probs=296.2
Q ss_pred ChhHHhhhcCCCCHHHHHHHhcCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHc-C--
Q 040136 68 DLNELRKSLHKITPFQLCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEE-G-- 144 (681)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-- 144 (681)
|+.+...+.+.++|.-+..-+.. -.++.+++.+..++. .+++.+......+..-|..+=..+...++|+....- |
T Consensus 634 DIKR~vVhth~L~pEwLv~yFg~-lsve~s~eclkaml~-~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~ 711 (1666)
T KOG0985|consen 634 DIKRVVVHTHLLNPEWLVNYFGS-LSVEDSLECLKAMLS-ANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLY 711 (1666)
T ss_pred HHHHHHHHhccCCHHHHHHHHHh-cCHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHH
Confidence 44555556667777665554443 366777777777654 344555555555555555554555555666654431 1
Q ss_pred --------CCCCHHHHHHHHHHHHhCCChHHHHHHHHHcH--------------------------hhcCCCCCHHhHH-
Q 040136 145 --------IICRESLFILIMKYYGRGGVPGQATRLLLDMK--------------------------SVYGCQPTFRSYN- 189 (681)
Q Consensus 145 --------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------------------~~~~~~~~~~~~~- 189 (681)
...++.+....+.+.++.|+..+..++.++-. .++++-+|...|-
T Consensus 712 yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLy 791 (1666)
T KOG0985|consen 712 YFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLY 791 (1666)
T ss_pred HHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHH
Confidence 34567777888888888888887777654321 1122222322221
Q ss_pred -----HHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHH------------HHhcCChhHHHHHHHHHHhCCCC
Q 040136 190 -----VVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKA------------LCMVNEVDSACSLLRDMTKHGCV 252 (681)
Q Consensus 190 -----~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~------------~~~~g~~~~A~~~~~~~~~~~~~ 252 (681)
-.|..|++.=++...-.+...++..+.. ....-+.++.. .-+.++..--...++.....| .
T Consensus 792 rnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~-E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG-~ 869 (1666)
T KOG0985|consen 792 RNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCS-EDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEG-S 869 (1666)
T ss_pred HhhHHHHHHHHHhhcCCcccchhhhhhhcCCCc-HHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhcc-C
Confidence 1234444444444444444444333221 11222222221 223344444444555555555 3
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCcccH
Q 040136 253 PNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLV----RGFTPDDITY 328 (681)
Q Consensus 253 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 328 (681)
.+..++|+|...|...++-.+-. .+ -+...=+..+.-||..+++..|.-.+++-.. .++......|
T Consensus 870 ~d~a~hnAlaKIyIDSNNnPE~f------Lk----eN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlf 939 (1666)
T KOG0985|consen 870 QDPATHNALAKIYIDSNNNPERF------LK----ENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLF 939 (1666)
T ss_pred cchHHHhhhhheeecCCCChHHh------cc----cCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHH
Confidence 45566666666665544322110 00 0111111122223332222211111110000 0000011122
Q ss_pred HHHHHHHHhcCCHHHHHH-----------HHhhcCC------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CC-
Q 040136 329 GVLMHGLCRTGRVDEARA-----------LLNKIPS------ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVG-CI- 389 (681)
Q Consensus 329 ~~l~~~~~~~g~~~~A~~-----------~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~- 389 (681)
....+.+.+..+.+-=.+ +.+++.+ .|+...+.-+.+++..+-..+.++ +++.+.-.+ .-
T Consensus 940 K~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIE-LLEKIvL~~S~Fs 1018 (1666)
T KOG0985|consen 940 KSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIE-LLEKIVLDNSVFS 1018 (1666)
T ss_pred HHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHH-HHHHHhcCCcccc
Confidence 223333333333222111 1122111 555666666777777777777777 555444322 11
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCcccc
Q 040136 390 PDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGL----SLNTGDR 465 (681)
Q Consensus 390 p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~ 465 (681)
-+...-+.++-...+. +.....+..+++.... .|+ +.......+-+++|..+|+..-..+. ....-+.
T Consensus 1019 e~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ 1090 (1666)
T KOG0985|consen 1019 ENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGS 1090 (1666)
T ss_pred cchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhh
Confidence 1122223333333332 3344444444443321 112 23334445556666666655322110 0011234
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040136 466 IEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEE 545 (681)
Q Consensus 466 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 545 (681)
++.|.+.-++.- .+..|..+..+-.+.|...+|++-|-+ ..|+..|..+++...+.|.+++-..++..
T Consensus 1091 ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~M 1158 (1666)
T KOG0985|consen 1091 LDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLM 1158 (1666)
T ss_pred HHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 444444443332 567899999999999999999887754 23777899999999999999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 040136 546 MMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDA 625 (681)
Q Consensus 546 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 625 (681)
+.++.-+|.+.+ .|+-+|++.++..+-.+++ ..||......+.+-|...|.++.|.-++.. .
T Consensus 1159 aRkk~~E~~id~--eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------v 1220 (1666)
T KOG0985|consen 1159 ARKKVREPYIDS--ELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------V 1220 (1666)
T ss_pred HHHhhcCccchH--HHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------h
Confidence 888877776664 7888899999987765544 358888888899999999999988776653 4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc
Q 040136 626 VTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKEIN 675 (681)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 675 (681)
..|..|...+...|.+..|....+++ .+..||.-+-.+|...+.
T Consensus 1221 SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~E 1264 (1666)
T KOG0985|consen 1221 SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEE 1264 (1666)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhh
Confidence 45788888899999998888776655 356788888777776543
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=99.32 E-value=1.4e-09 Score=115.25 Aligned_cols=149 Identities=11% Similarity=-0.037 Sum_probs=66.8
Q ss_pred hHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 040136 165 PGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLR 244 (681)
Q Consensus 165 ~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 244 (681)
.++|...+++.. ... +.+...+..+...+...|++++|...|++.++.+. .+...+..+...+...|++++|...++
T Consensus 320 ~~~A~~~~~~Al-~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 320 MIKAKEHAIKAT-ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred HHHHHHHHHHHH-hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 445555555544 221 23344444444445555555555555555555431 123344444455555555555555555
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 245 DMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRML 317 (681)
Q Consensus 245 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 317 (681)
+..+.+ +.+...+..++..+...|++++|...++++.+...+.+...+..+...+...|+.++|...+.++.
T Consensus 397 ~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 397 ECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 555443 112222222233344445555555555554433211123333444444445555555555554443
No 74
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=3.5e-09 Score=106.57 Aligned_cols=246 Identities=19% Similarity=0.164 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhc-----CC-CcCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccc
Q 040136 392 VFTFNILIHGLCKQRRFGSALELVNAMAVK-----GC-EPNIV-TYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGD 464 (681)
Q Consensus 392 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 464 (681)
..+...+...|...|+++.|..+++...+. |. .|.+. ..+.+...|...+++++|..+|++++.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~--------- 269 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT--------- 269 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH---------
Confidence 345566888899999999999998887654 21 22222 334467788999999999999877654
Q ss_pred cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCCH-HHHHHHHHHHHHcCCHH
Q 040136 465 RIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFR-----GC-PLDE-ITYNGLIKALCNAGAVD 537 (681)
Q Consensus 465 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~ 537 (681)
+++.......+.-..+++.|..+|.+.|++++|...++.+.+. +. .+.. ..++.+...|+..++++
T Consensus 270 -------i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~E 342 (508)
T KOG1840|consen 270 -------IREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYE 342 (508)
T ss_pred -------HHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchh
Confidence 3444433333334567788888999999999988887776542 11 1222 24566677888999999
Q ss_pred HHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC--CC-CHHHHHHHHHHHHhc
Q 040136 538 KGLGLFEEMMRK---GIKPS----SISCNILINGLCRTRKANTALEFLRDMIHR----GL--TP-DIVTYNSLINGLCKM 603 (681)
Q Consensus 538 ~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--~p-~~~~~~~l~~~~~~~ 603 (681)
+|..+++...+. -+.++ ..+++.|...|...|++++|.+++++++.. +. .+ ....++.+...|.+.
T Consensus 343 ea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~ 422 (508)
T KOG1840|consen 343 EAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEEL 422 (508)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHh
Confidence 999999987653 12222 367899999999999999999999998863 11 22 245678899999999
Q ss_pred CCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 604 GCIQEALNLFDKLQAE----GI-YPD-AVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 604 g~~~~A~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
+++.+|.++|.+...- |. .|+ ..+|..|+..|...|++++|.++.+.+..
T Consensus 423 k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 423 KKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred cccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 9999999988876543 21 333 45888999999999999999999988874
No 75
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.29 E-value=4.1e-09 Score=99.39 Aligned_cols=200 Identities=16% Similarity=0.066 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHH
Q 040136 392 VFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALG 471 (681)
Q Consensus 392 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~ 471 (681)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------- 95 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-------------- 95 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------
Confidence 4556666777777888888888887776653 3345667777777888888888888877776642
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 040136 472 LYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGC-PLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKG 550 (681)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 550 (681)
+.+...+..+...+...|++++|.+.+++...... +.....+..+...+...|++++|...+++..+..
T Consensus 96 ----------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 96 ----------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred ----------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 22455667777778888888888888888776421 2344566677778888888899988888888764
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 551 IKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 551 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
. .+...+..+...+...|++++|.+.+++..+. .+.+...+..++..+...|+.++|..+.+.+..
T Consensus 166 ~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 166 P-QRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred c-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 2 24567778888888889999999888888775 344566666777778888888888888887765
No 76
>PRK12370 invasion protein regulator; Provisional
Probab=99.28 E-value=3.1e-09 Score=112.60 Aligned_cols=249 Identities=12% Similarity=0.056 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---------hcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCC
Q 040136 372 FDEAKAIFYDSMLSVGCIPDVFTFNILIHGLC---------KQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQ 442 (681)
Q Consensus 372 ~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~---------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 442 (681)
.++|++ +++...+.. +-+...|..+..++. ..+++++|...+++..+.. +.+...+..+...+...|+
T Consensus 277 ~~~A~~-~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALK-LLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHH-HHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 445666 445444432 113334444443332 2344778888888888763 3356677777777888888
Q ss_pred HHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 040136 443 LEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEIT 522 (681)
Q Consensus 443 ~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 522 (681)
+++|...|+++++.+ +.+...+..+..++...|++++|...++++.+.. |.+...
T Consensus 354 ~~~A~~~~~~Al~l~------------------------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~ 408 (553)
T PRK12370 354 YIVGSLLFKQANLLS------------------------PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAA 408 (553)
T ss_pred HHHHHHHHHHHHHhC------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhh
Confidence 888888888887764 2256677778888888888998988888888774 334334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 040136 523 YNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPD-IVTYNSLINGLC 601 (681)
Q Consensus 523 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 601 (681)
+..++..+...|++++|+..++++.+...+-+...+..+..++...|+.++|...++++... .|+ ....+.+...++
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHh
Confidence 44445556678888888888888876532224555677778888889999998888887653 333 344555556666
Q ss_pred hcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 040136 602 KMGCIQEALNLFDKLQAE-GIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANG 655 (681)
Q Consensus 602 ~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 655 (681)
..| ++|...++.+.+. ...+....+ +...+.-.|+.+.+..+ +++.+.|
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 666 4777777776654 112222222 33334445665555555 7776543
No 77
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=3.8e-07 Score=89.87 Aligned_cols=463 Identities=11% Similarity=0.071 Sum_probs=231.1
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHH--HH
Q 040136 115 DVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNV--VL 192 (681)
Q Consensus 115 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--ll 192 (681)
..+..=++.....|++++|.+...++...++ .+..++..-+.++.+.+++++|+.+.+.-. -..+++. +=
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~p-dd~~a~~cKvValIq~~ky~~ALk~ikk~~-------~~~~~~~~~fE 84 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVP-DDEDAIRCKVVALIQLDKYEDALKLIKKNG-------ALLVINSFFFE 84 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCC-CcHhhHhhhHhhhhhhhHHHHHHHHHHhcc-------hhhhcchhhHH
Confidence 4455567778899999999999999999884 577778777888889999999996655432 1122222 23
Q ss_pred HHHH--hcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcC
Q 040136 193 DVLV--AGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALS-KSN 269 (681)
Q Consensus 193 ~~~~--~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~ 269 (681)
.+|| +.|..++|+..++-..+ .+..+...-...+.+.|++++|..+|+.+.+.+. ++ +...+++-+ ..+
T Consensus 85 KAYc~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd---~d~~~r~nl~a~~ 156 (652)
T KOG2376|consen 85 KAYCEYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DD---QDEERRANLLAVA 156 (652)
T ss_pred HHHHHHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-ch---HHHHHHHHHHHHH
Confidence 4444 78999999999882222 2445677777888999999999999999988762 22 222222111 111
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 040136 270 RVSEALMLLEEMILMGCTSDVQTFNDV---IHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARA 346 (681)
Q Consensus 270 ~~~~A~~~~~~m~~~~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 346 (681)
-...+ ++++... ..| ..+|..+ ...+...|++.+|+++++.....+..- +. .++.. -.+
T Consensus 157 a~l~~-~~~q~v~---~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~-----------l~-~~d~~-eEe 218 (652)
T KOG2376|consen 157 AALQV-QLLQSVP---EVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREK-----------LE-DEDTN-EEE 218 (652)
T ss_pred HhhhH-HHHHhcc---CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh-----------hc-ccccc-hhh
Confidence 11111 1222222 222 2344433 344567899999999999884432110 00 00000 000
Q ss_pred HHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH---HHHhcCChhH--HHHHHHHHHhc
Q 040136 347 LLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIH---GLCKQRRFGS--ALELVNAMAVK 421 (681)
Q Consensus 347 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~---~~~~~~~~~~--A~~~~~~~~~~ 421 (681)
+-.+ =..+...|...+...|+.++|.+ ++....+.. ++|........+ +...-.++-+ ++..++.....
T Consensus 219 ie~e----l~~IrvQlayVlQ~~Gqt~ea~~-iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~ 292 (652)
T KOG2376|consen 219 IEEE----LNPIRVQLAYVLQLQGQTAEASS-IYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFK 292 (652)
T ss_pred HHHH----HHHHHHHHHHHHHHhcchHHHHH-HHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHH
Confidence 0000 00112223344555666666666 555554433 223322111111 1111111111 11111111110
Q ss_pred -----------CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHH
Q 040136 422 -----------GCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNT 490 (681)
Q Consensus 422 -----------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 490 (681)
.-...+.--+.++..|. +..+.+.++..... +..|. ..+..
T Consensus 293 l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp-------------------------~~~p~-~~~~~ 344 (652)
T KOG2376|consen 293 LAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLP-------------------------GMSPE-SLFPI 344 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCC-------------------------ccCch-HHHHH
Confidence 00001111112222221 11222222111110 11122 22223
Q ss_pred HHHH-HH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCCHHHHHH
Q 040136 491 LIHA-FL-RRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFE--------EMMRKGIKPSSISCNI 560 (681)
Q Consensus 491 li~~-~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~ 560 (681)
++.. .. +...+..+.+++...-+....-...+....+......|+++.|.+++. .+.+.+..|.. ...
T Consensus 345 ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~a 422 (652)
T KOG2376|consen 345 LLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT--VGA 422 (652)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHH
Confidence 3322 21 222456666666665554211123344455555667777777777777 44443444433 344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 561 LINGLCRTRKANTALEFLRDMIHR--GLTPDI----VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISW 634 (681)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 634 (681)
+...+.+.++-+.|..++.+.... .-.+.. .++..+...-.+.|+-++|..+++++.+.+ ++|..+...++.+
T Consensus 423 iv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a 501 (652)
T KOG2376|consen 423 IVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTA 501 (652)
T ss_pred HHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHH
Confidence 555666666655566666555432 011111 223333334446677788888888887753 5566777777777
Q ss_pred HHhcCChhHHHHHHH
Q 040136 635 HFKEGLFDDAFLILH 649 (681)
Q Consensus 635 ~~~~g~~~~A~~~~~ 649 (681)
|++. +.+.|..+-+
T Consensus 502 ~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 502 YARL-DPEKAESLSK 515 (652)
T ss_pred HHhc-CHHHHHHHhh
Confidence 7765 3455555443
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=3.7e-10 Score=102.09 Aligned_cols=223 Identities=14% Similarity=0.064 Sum_probs=112.7
Q ss_pred HHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 040136 191 VLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNR 270 (681)
Q Consensus 191 ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 270 (681)
+..+|.+.|.+.+|.+.|+.-+.. .|-+.||..|-++|.+..++..|+.++.+-.+. +|-|+....-+.+.+-..++
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHh
Confidence 444555555555555555554443 334445555555555555555555555555443 23333333444555555555
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhh
Q 040136 271 VSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNK 350 (681)
Q Consensus 271 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 350 (681)
.++|.++++...+.. +.++.....+...|.-.++++-|+.++++++..|+. +...|+.+.-+|.-.+++|-++..|++
T Consensus 306 ~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 555555555555443 334444444555555555555666666655555544 445555555555555555555555544
Q ss_pred cCC----CC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040136 351 IPS----AN--VVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAV 420 (681)
Q Consensus 351 ~~~----~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 420 (681)
... ++ ..+|-.+.......|++.-|.. .|+.....+ .-+...++.|.-.-.+.|+++.|..++.....
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~r-cfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKR-CFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHH-HHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 332 11 2234444444444455555555 444443322 22344555555555566666666666655544
No 79
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=2.9e-06 Score=88.62 Aligned_cols=244 Identities=12% Similarity=0.142 Sum_probs=139.9
Q ss_pred HHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 040136 192 LDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRV 271 (681)
Q Consensus 192 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 271 (681)
+.+|+..|+++++.-.. .+.|..|| |..+++...+ -..|.+.+....+.... +...-++.+...+...+..
T Consensus 488 i~cfAE~Gqf~KiilY~---kKvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~--~~~~die~I~DlFme~N~i 558 (1666)
T KOG0985|consen 488 IQCFAETGQFKKIILYA---KKVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDE--EPLADIEQIVDLFMELNLI 558 (1666)
T ss_pred HHHHHHhcchhHHHHHH---HHcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccC--CCcccHHHHHHHHHHHHhh
Confidence 34444444444443332 34567776 4556666555 56888888887777654 2344466677777777777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhc
Q 040136 272 SEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKI 351 (681)
Q Consensus 272 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 351 (681)
..+...+-..++.. .|+.....+-+---...+ |.++.+.++..+. ....-+..+.+.|.+.|-+..|++.+..+
T Consensus 559 Qq~TSFLLdaLK~~-~Pd~g~LQTrLLE~NL~~----aPqVADAILgN~m-FtHyDra~IAqLCEKAGL~qraLehytDl 632 (1666)
T KOG0985|consen 559 QQCTSFLLDALKLN-SPDEGHLQTRLLEMNLVH----APQVADAILGNDM-FTHYDRAEIAQLCEKAGLLQRALEHYTDL 632 (1666)
T ss_pred hhhHHHHHHHhcCC-ChhhhhHHHHHHHHHhcc----chHHHHHHHhccc-cccccHHHHHHHHHhcchHHHHHHhcccH
Confidence 77777766666543 455444333222122222 2333333332221 12333677888888999999998888776
Q ss_pred CC-CChHHHHHH-----HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----
Q 040136 352 PS-ANVVLLNTV-----INGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVK---- 421 (681)
Q Consensus 352 ~~-~~~~~~~~l-----~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~---- 421 (681)
.+ .-.++...+ +-.|...-.++++.+ ..+.|...+++.|..+...+..-|...=-.+...++|+.....
T Consensus 633 ~DIKR~vVhth~L~pEwLv~yFg~lsve~s~e-clkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~ 711 (1666)
T KOG0985|consen 633 YDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLE-CLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLY 711 (1666)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHhcCHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHH
Confidence 65 112222221 234555566777777 7777777777767666666555555554455555555554332
Q ss_pred -------CCCcCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 040136 422 -------GCEPNIVTYTILVDGFCKEGQLEKANIIIN 451 (681)
Q Consensus 422 -------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 451 (681)
++..|+.+....+.+-|+.|++.+..++.+
T Consensus 712 yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicr 748 (1666)
T KOG0985|consen 712 YFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICR 748 (1666)
T ss_pred HHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHh
Confidence 234455556666777777777777666554
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=4.7e-09 Score=105.66 Aligned_cols=252 Identities=19% Similarity=0.169 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCCccc-HHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHH
Q 040136 290 VQTFNDVIHGLCKVNRIHEAAKLVDRMLVR-----G-FTPDDIT-YGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTV 362 (681)
Q Consensus 290 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 362 (681)
..+...+...|...|+++.|+.+++..++. | ..|...+ .+.+...|...+++++|..+|+++..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~--------- 269 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT--------- 269 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH---------
Confidence 345555677777777777777777766543 1 1122222 22355566666777777766655322
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-----CC-CcCH-hhHHHHHH
Q 040136 363 INGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVK-----GC-EPNI-VTYTILVD 435 (681)
Q Consensus 363 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~~-~~~~~ll~ 435 (681)
+++...-...+.-..+++.|...|.+.|++++|...++...+. |. .|.+ ..++.+..
T Consensus 270 ----------------i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~ 333 (508)
T KOG1840|consen 270 ----------------IREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAA 333 (508)
T ss_pred ----------------HHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 2221111111112244556666677777777776666655432 11 1222 34666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 040136 436 GFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRG 515 (681)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 515 (681)
.++..+++++|..++....+ ++.+.....-.--..+++.|...|.+.|++++|.+++++++...
T Consensus 334 ~~~~~~~~Eea~~l~q~al~----------------i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 334 ILQSMNEYEEAKKLLQKALK----------------IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred HHHHhcchhHHHHHHHHHHH----------------HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 88889999999998875544 33322222111234678888888888888888888888876531
Q ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 516 -------CPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK----GIK-P-SSISCNILINGLCRTRKANTALEFLRDMI 582 (681)
Q Consensus 516 -------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 582 (681)
..-....++.|...|.+.+.+.+|.++|.+...- |.. | ...+|..|...|...|+++.|.++.+...
T Consensus 398 ~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 398 RELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1223456677777788888888787777765432 211 1 23556667777777777777777766655
No 81
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=3.6e-07 Score=93.06 Aligned_cols=225 Identities=13% Similarity=0.072 Sum_probs=131.9
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhC
Q 040136 91 PLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEG--------IICRESLFILIMKYYGRG 162 (681)
Q Consensus 91 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~ 162 (681)
-|+.+.|.+-.+.. .+..+|..+.+.|.+..+++.|.-.+..|.... ....+..-..........
T Consensus 741 iG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieL 813 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIEL 813 (1416)
T ss_pred eccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHH
Confidence 57777777666553 235678888998988888887766555543321 010112222333334577
Q ss_pred CChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 040136 163 GVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSL 242 (681)
Q Consensus 163 g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 242 (681)
|..++|..+|++-+ + |..|-..|-..|.+++|+++-+.--+... ..||....+.+-..++.+.|++.
T Consensus 814 gMlEeA~~lYr~ck-R---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 814 GMLEEALILYRQCK-R---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred hhHHHHHHHHHHHH-H---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHH
Confidence 89999999998887 2 23444556677889999888765333222 24566666666667777777777
Q ss_pred HHHHH----------hCC---------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 243 LRDMT----------KHG---------CVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKV 303 (681)
Q Consensus 243 ~~~~~----------~~~---------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 303 (681)
|++.. ... -..|...|......+-..|+++.|+.++....+ |-++++..|-+
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~q 951 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQ 951 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeec
Confidence 66532 111 012334444444455557888888888776653 34445555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhh
Q 040136 304 NRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNK 350 (681)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 350 (681)
|+.++|-++-++- -|......+.+.|-..|++.+|...|-+
T Consensus 952 Gk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 952 GKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred cCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6666555554432 1333444455555555555555555544
No 82
>PF13041 PPR_2: PPR repeat family
Probab=99.19 E-value=5.3e-11 Score=79.92 Aligned_cols=49 Identities=43% Similarity=0.693 Sum_probs=30.4
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 253 PNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLC 301 (681)
Q Consensus 253 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 301 (681)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4556666666666666666666666666666666666666666666554
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.19 E-value=1.2e-08 Score=88.41 Aligned_cols=186 Identities=15% Similarity=0.099 Sum_probs=156.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 487 TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLC 566 (681)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 566 (681)
+...|.-.|.+.|+...|.+-+++.++.. |.+..++..+...|.+.|+.+.|.+.|+++++.... +-...|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 45566778999999999999999999984 667888999999999999999999999999987433 5678889999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHH
Q 040136 567 RTRKANTALEFLRDMIHRGLTP-DIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGLFDDA 644 (681)
Q Consensus 567 ~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 644 (681)
..|++++|...|++......-+ -..+|..+.-+..+.|+.+.|...|++.++. .|+ ..+...+...+.+.|++..|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999999863222 2468888888889999999999999999985 454 56778899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCccc
Q 040136 645 FLILHKGVANGFVPNDATWYILVRNLVKEINME 677 (681)
Q Consensus 645 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 677 (681)
..++++....+ .++..+....++.-.+.|+.+
T Consensus 193 r~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~ 224 (250)
T COG3063 193 RLYLERYQQRG-GAQAESLLLGIRIAKRLGDRA 224 (250)
T ss_pred HHHHHHHHhcc-cccHHHHHHHHHHHHHhccHH
Confidence 99999998865 488888777777777777654
No 84
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=5.2e-07 Score=88.10 Aligned_cols=244 Identities=16% Similarity=0.100 Sum_probs=154.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHH
Q 040136 395 FNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQ 474 (681)
Q Consensus 395 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 474 (681)
...+.++..+..++..|.+-+....+.. .++.-++....+|...|.+...........+.|.. ....++
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre---------~rad~k 295 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE---------LRADYK 295 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH---------HHHHHH
Confidence 4567778888888999999888888764 56666777778888888888877776665554311 111111
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 040136 475 DMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPS 554 (681)
Q Consensus 475 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 554 (681)
-+ ...+..+..+|.+.++++.|+..|.+.+.....|+. ..+....+++........-.+..-
T Consensus 296 lI--------ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~- 357 (539)
T KOG0548|consen 296 LI--------AKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK- 357 (539)
T ss_pred HH--------HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-
Confidence 11 112233555777788888899888887665434332 122333445554444443322221
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLIS 633 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 633 (681)
..-...-...+.+.|++..|++.|.+++... +-|...|..-.-+|.+.|.+..|+.-.+..++. .|+ ...|..=..
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~ 434 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGA 434 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHH
Confidence 1112222556677788888888888888764 446677777777888888888888877777774 444 445555556
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 634 WHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVK 672 (681)
Q Consensus 634 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 672 (681)
++....+|++|.+.|.+.++ ..|+..-+.--+.-|..
T Consensus 435 al~~mk~ydkAleay~eale--~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 435 ALRAMKEYDKALEAYQEALE--LDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHH
Confidence 66666778888888888877 44666555555555544
No 85
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=7.1e-08 Score=86.48 Aligned_cols=404 Identities=14% Similarity=0.140 Sum_probs=232.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHH
Q 040136 220 VYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFND-VIH 298 (681)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~-li~ 298 (681)
..-+..++..+.+..+++.|++++....++. +.+......+..+|....++..|.+.++++-.. .|...-|.. -..
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ 86 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 3346666777777788888888888777765 335666777778888888888888888887764 455444443 345
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCcc--cHHHHHHHHHhcCCHHHHHHHHhhcCC-CChHHHHHHHHHHHhcCCHHHH
Q 040136 299 GLCKVNRIHEAAKLVDRMLVRGFTPDDI--TYGVLMHGLCRTGRVDEARALLNKIPS-ANVVLLNTVINGYVISGRFDEA 375 (681)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a 375 (681)
.+.+.+.+..|+.+...|... ++.. +...-..+....+++..+..+.++.+. .+..+.+.......+.|++++|
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHH
Confidence 666778888888888777542 1111 111111223456788888888888885 6666777777778888999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc-------------CHh--------------
Q 040136 376 KAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEP-------------NIV-------------- 428 (681)
Q Consensus 376 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~-------------~~~-------------- 428 (681)
.+-+-..+.-.|.. ....|+..+ +..+.|+++.|++...++.++|++. |+.
T Consensus 164 vqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 98444444445555 445666555 4557788999999999988876531 110
Q ss_pred -hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040136 429 -TYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKL 507 (681)
Q Consensus 429 -~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 507 (681)
.+|.-...+.+.|+++.|.+.+-.|..+. ....|++|...+.-. -..+++.+..+-
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRa----------------------E~elDPvTLHN~Al~-n~~~~p~~g~~K 298 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRA----------------------EEELDPVTLHNQALM-NMDARPTEGFEK 298 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcc----------------------cccCCchhhhHHHHh-cccCCccccHHH
Confidence 12222223445566666655554443221 112355665544322 123445555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCC
Q 040136 508 VNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGI-KPSSISCNILINGLC-RTRKANTALEFLRDMIHRG 585 (681)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~ 585 (681)
+.-+...+ |-...||..++-.||+..-++.|-.++.+-..... -.+...|+. ++++. ..-..++|.+-++.+...
T Consensus 299 LqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La~~- 375 (459)
T KOG4340|consen 299 LQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLAGM- 375 (459)
T ss_pred HHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHH-
Confidence 55555553 45677888888889998888888777654322111 113334433 33333 345677777666655432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 040136 586 LTPDIVTYNSLINGLCKMGCIQE---ALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDAT 662 (681)
Q Consensus 586 ~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 662 (681)
+.-......+-++.-...++-.+ |++-+++..+. =..+..+-.+.|++..++..+.++|+.-++ +..+..+
T Consensus 376 l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve--fC~ehd~ 449 (459)
T KOG4340|consen 376 LTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVE--FCNDHDV 449 (459)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHh--hhcccce
Confidence 00011111111222222222221 22222222221 112233445667788889999999988876 3444444
Q ss_pred H
Q 040136 663 W 663 (681)
Q Consensus 663 ~ 663 (681)
|
T Consensus 450 W 450 (459)
T KOG4340|consen 450 W 450 (459)
T ss_pred e
Confidence 4
No 86
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.16 E-value=2.1e-06 Score=89.71 Aligned_cols=551 Identities=12% Similarity=-0.023 Sum_probs=298.2
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 040136 91 PLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATR 170 (681)
Q Consensus 91 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 170 (681)
+++...|+..|=.+.+... .-...|..+..+|..-.|...|...|..+-+.+. .+......+...|++..+.+.|..
T Consensus 471 rK~~~~al~ali~alrld~--~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDV--SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred hhhHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHH
Confidence 4567777777766555432 2345677777777777788888888888888774 366777888888999998888888
Q ss_pred HHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 040136 171 LLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHG 250 (681)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 250 (681)
+.-..-+......-...|-.+.-.+.+.++..+|+.-|+..++..+. |...|..++.+|...|++..|.++|.++....
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 74443311110111122333444566778888888888888887544 77888889999999999999999998887754
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------H
Q 040136 251 CVPNSVVYQTLIHALSKSNRVSEALMLLEEMILM------GCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRM-------L 317 (681)
Q Consensus 251 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-------~ 317 (681)
|.+...---..-..+..|.+.+|+..+...... +...-..++..+...+...|-..++.+.++.. .
T Consensus 627 -P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 627 -PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred -cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 222222222334456788888888888776532 11111223333333333333333333333322 2
Q ss_pred HCCCCCCcccHHHHHH-------------------HHHh----cCCH---H---HHHHHHhhcCC--CChHHHHHHHHHH
Q 040136 318 VRGFTPDDITYGVLMH-------------------GLCR----TGRV---D---EARALLNKIPS--ANVVLLNTVINGY 366 (681)
Q Consensus 318 ~~~~~~~~~~~~~l~~-------------------~~~~----~g~~---~---~A~~~~~~~~~--~~~~~~~~l~~~~ 366 (681)
.+...-+...|-.+.+ ++.+ .+.. | -+.+.+-.-.+ .+...|..|+..|
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINY 785 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHH
Confidence 2211111111211111 1111 1110 0 00000000000 2234455554444
Q ss_pred Hh----c---C-CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHH
Q 040136 367 VI----S---G-RFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFC 438 (681)
Q Consensus 367 ~~----~---g-~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 438 (681)
.+ . + +...|+. .+....+.. .-+..+|+.|. .....|.+.-|.--|-+-... .+....+|..+...+.
T Consensus 786 lr~f~~l~et~~~~~~Ai~-c~KkaV~L~-ann~~~WnaLG-Vlsg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l 861 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIR-CCKKAVSLC-ANNEGLWNALG-VLSGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVL 861 (1238)
T ss_pred HHHHHHcCCcchhHHHHHH-HHHHHHHHh-hccHHHHHHHH-Hhhccchhhhhhhhhhhhhhc-cccchhheeccceeEE
Confidence 33 1 1 1123444 222222211 12444555443 334445555554444433332 1335567777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCc-----------cccHHHHHHHHHHH--H--hcCCCCCHHHHHHHHHHHHhcCCHHH
Q 040136 439 KEGQLEKANIIINEMLAKGLSLNT-----------GDRIEEALGLYQDM--L--LEGVTANTVTYNTLIHAFLRRGSLHE 503 (681)
Q Consensus 439 ~~g~~~~A~~~~~~~~~~~~~~~~-----------~~~~~~a~~~~~~~--~--~~~~~~~~~~~~~li~~~~~~g~~~~ 503 (681)
+..+++.|...|.......+.... .|++-++..+|..- . ..|-.++..-|-.........|+.++
T Consensus 862 ~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~ 941 (1238)
T KOG1127|consen 862 ENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEE 941 (1238)
T ss_pred ecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHH
Confidence 888888888888877665433222 34455555555441 1 12334455445444445566666655
Q ss_pred HHHHHHHHHh---------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHH----HHHHHHHhcC
Q 040136 504 AHKLVNDMLF---------RGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK-GIKPSSISCN----ILINGLCRTR 569 (681)
Q Consensus 504 A~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~----~l~~~~~~~g 569 (681)
-+...+.+.. .+.|.+...|...+....+.+.+..|.....+++.. ..+-+...|+ .+.+.++..|
T Consensus 942 ~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslg 1021 (1238)
T KOG1127|consen 942 SINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLG 1021 (1238)
T ss_pred HHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhc
Confidence 4444333322 135667788888888888888888888777775432 1122334444 3445556667
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCChhHHHHH
Q 040136 570 KANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE-GIYPDA-VTYNTLISWHFKEGLFDDAFLI 647 (681)
Q Consensus 570 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~ 647 (681)
.++.|..-+..... ..+......-+.. .-.|+++++.+.|+++... +-.-+. +....++-+....|..+.|...
T Consensus 1022 efe~A~~a~~~~~~---evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~l 1097 (1238)
T KOG1127|consen 1022 EFESAKKASWKEWM---EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFL 1097 (1238)
T ss_pred chhhHhhhhcccch---hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHH
Confidence 77765544432211 1122221111111 3458999999999998874 112232 3445556666777888888887
Q ss_pred HHHHHHC
Q 040136 648 LHKGVAN 654 (681)
Q Consensus 648 ~~~~~~~ 654 (681)
+-+....
T Consensus 1098 Lfe~~~l 1104 (1238)
T KOG1127|consen 1098 LFEVKSL 1104 (1238)
T ss_pred HHHHHHh
Confidence 7777653
No 87
>PF13041 PPR_2: PPR repeat family
Probab=99.16 E-value=1.1e-10 Score=78.31 Aligned_cols=44 Identities=43% Similarity=0.794 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLIN 598 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 598 (681)
..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.+++
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~ 46 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILIN 46 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333
No 88
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.16 E-value=4.1e-07 Score=91.43 Aligned_cols=195 Identities=15% Similarity=0.192 Sum_probs=122.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHH
Q 040136 397 ILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDM 476 (681)
Q Consensus 397 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 476 (681)
..+.+....+.+.+|+.+++.+..+. .....|..+.+.|...|+++.|.++|.+.
T Consensus 737 kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~----------------------- 791 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA----------------------- 791 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc-----------------------
Confidence 34556667788888888888887763 34456778888899999999988888543
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 040136 477 LLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSI 556 (681)
Q Consensus 477 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 556 (681)
..++-.|..|.+.|+|+.|.++-.+.. |.......|.+-..-+-++|++.+|.++|-.+. .|+
T Consensus 792 ---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-- 854 (1636)
T KOG3616|consen 792 ---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-- 854 (1636)
T ss_pred ---------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch--
Confidence 234455677888888888888776653 223344455555556667788888877764432 233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 557 SCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHF 636 (681)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 636 (681)
.-|.+|-+.|..+..+++.++--.. .-..|...+..-+-..|+..+|...|-+..+ |.+-+..|.
T Consensus 855 ---~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk 919 (1636)
T KOG3616|consen 855 ---KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYK 919 (1636)
T ss_pred ---HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhh
Confidence 2355677777777777666553211 1123445556666677777777766655443 334445555
Q ss_pred hcCChhHHHHHH
Q 040136 637 KEGLFDDAFLIL 648 (681)
Q Consensus 637 ~~g~~~~A~~~~ 648 (681)
..+.|++|.++.
T Consensus 920 ~s~lw~dayria 931 (1636)
T KOG3616|consen 920 ASELWEDAYRIA 931 (1636)
T ss_pred hhhhHHHHHHHH
Confidence 555566555543
No 89
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.15 E-value=5.3e-08 Score=84.44 Aligned_cols=207 Identities=15% Similarity=0.092 Sum_probs=172.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040136 429 TYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLV 508 (681)
Q Consensus 429 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 508 (681)
+...|.-.|.+.|++..|..-+++.++.++ -+..+|..+...|-+.|+.+.|.+.|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DP------------------------s~~~a~~~~A~~Yq~~Ge~~~A~e~Y 92 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDP------------------------SYYLAHLVRAHYYQKLGENDLADESY 92 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc------------------------ccHHHHHHHHHHHHHcCChhhHHHHH
Confidence 345566679999999999999999888753 26678889999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040136 509 NDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKG-IKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLT 587 (681)
Q Consensus 509 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 587 (681)
++.+... |-+..+.|-...-+|..|++++|...|++++..- ..--..+|..+.-+..+.|+.+.|.+.|++.++.. +
T Consensus 93 rkAlsl~-p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p 170 (250)
T COG3063 93 RKALSLA-PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-P 170 (250)
T ss_pred HHHHhcC-CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-c
Confidence 9999874 6688899999999999999999999999999862 12234688888888999999999999999999863 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 040136 588 PDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWY 664 (681)
Q Consensus 588 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 664 (681)
-...+.-.+.....+.|++..|..+++.....+ .++.......|..-...|+.+.|.++=..+.+ .-|.+.-+-
T Consensus 171 ~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e~q 244 (250)
T COG3063 171 QFPPALLELARLHYKAGDYAPARLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEEYQ 244 (250)
T ss_pred CCChHHHHHHHHHHhcccchHHHHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHH
Confidence 245667788888999999999999999999876 48888888888888999999988888777776 356555443
No 90
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.11 E-value=8.8e-08 Score=92.75 Aligned_cols=227 Identities=17% Similarity=0.083 Sum_probs=152.6
Q ss_pred CChhHHHHHHHHHHhcC-CCc--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCC
Q 040136 406 RRFGSALELVNAMAVKG-CEP--NIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVT 482 (681)
Q Consensus 406 ~~~~~A~~~~~~~~~~~-~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 482 (681)
+..+.++.-+.+++... ..| ....|..+...|...|+.++|...|++.++.. +
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~------------------------P 95 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR------------------------P 95 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC------------------------C
Confidence 45566666666666532 122 23457777778888898888888888887763 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 483 ANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILI 562 (681)
Q Consensus 483 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 562 (681)
.+...|+.+...+...|++++|...|+..++.. |.+..++..+..++...|++++|...|++..+.. |+........
T Consensus 96 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~ 172 (296)
T PRK11189 96 DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWL 172 (296)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 367888888899999999999999999988763 5567788888888888999999999999988864 3322122222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCC-CHHHHHHHHHHHH
Q 040136 563 NGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE---G--IYP-DAVTYNTLISWHF 636 (681)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~p-~~~~~~~l~~~~~ 636 (681)
..+...++.++|.+.+++.... ..|+...+ .......|+..++ +.++.+.+. . +.| ....|..+...+.
T Consensus 173 ~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~ 247 (296)
T PRK11189 173 YLAESKLDPKQAKENLKQRYEK-LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYL 247 (296)
T ss_pred HHHHccCCHHHHHHHHHHHHhh-CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 2334567889999999776543 23332222 2233345666554 345555432 0 111 2357888899999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 040136 637 KEGLFDDAFLILHKGVANGFVPNDATWYI 665 (681)
Q Consensus 637 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 665 (681)
+.|++++|...|+++++.. +||..-+..
T Consensus 248 ~~g~~~~A~~~~~~Al~~~-~~~~~e~~~ 275 (296)
T PRK11189 248 SLGDLDEAAALFKLALANN-VYNFVEHRY 275 (296)
T ss_pred HCCCHHHHHHHHHHHHHhC-CchHHHHHH
Confidence 9999999999999999743 346655544
No 91
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.06 E-value=2.6e-06 Score=89.10 Aligned_cols=484 Identities=11% Similarity=-0.001 Sum_probs=269.9
Q ss_pred CchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHH
Q 040136 129 EFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLF 208 (681)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~ 208 (681)
+...|...|-+..+.++. -..+|..|...|....+...|.+.|+... +.. ..+...+......|++..+++.|..+.
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAF-eLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAF-ELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 355566666666665532 34578888888888888888999998887 332 445667788888999999999998884
Q ss_pred HHHHHCCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 040136 209 YDMLSKGIS-PTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCT 287 (681)
Q Consensus 209 ~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 287 (681)
-..-+.... .-..-|..+.-.|...++...|..-|+...+.. |.|...|..+..+|...|++..|.++|.+.... .
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 333332100 001112223344667788888888888888876 667888999999999999999999999888764 3
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCC-------
Q 040136 288 SD-VQTFNDVIHGLCKVNRIHEAAKLVDRMLVRG------FTPDDITYGVLMHGLCRTGRVDEARALLNKIPS------- 353 (681)
Q Consensus 288 ~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 353 (681)
|+ ...---.....+..|.+.+|+..+....... ..--..++..+...+.-.|-..+|...+++..+
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 33 2222223344577889999988888776431 111112222222333333444444444443222
Q ss_pred ----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---h---HHHHHHHHHHhcCC
Q 040136 354 ----ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRF---G---SALELVNAMAVKGC 423 (681)
Q Consensus 354 ----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~---~---~A~~~~~~~~~~~~ 423 (681)
.+...|-.+.+ |.. ++-... .. .|+......+..-....+.. + -+.+.+-.-. .+
T Consensus 707 h~~~~~~~~Wi~asd----------ac~-~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl 771 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASD----------ACY-IFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SL 771 (1238)
T ss_pred HhhhhhHHHHHHHhH----------HHH-HHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HH
Confidence 11222222222 112 222121 11 22322222222212222222 1 0111110001 11
Q ss_pred CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 040136 424 EPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHE 503 (681)
Q Consensus 424 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 503 (681)
..+...|..++..|.+ .....+-. ..+...|+..+++..+.. ..+..+|+.|.-. ...|++.-
T Consensus 772 ~~~~~~WyNLGinylr------------~f~~l~et---~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~ 834 (1238)
T KOG1127|consen 772 AIHMYPWYNLGINYLR------------YFLLLGET---MKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVAC 834 (1238)
T ss_pred hhccchHHHHhHHHHH------------HHHHcCCc---chhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhh
Confidence 1223344444333322 11111000 011123333333333321 2266777776655 66678888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--H
Q 040136 504 AHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRD--M 581 (681)
Q Consensus 504 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--~ 581 (681)
|...|-+-... .|....+|..+...+.+..+++-|...|.......+. +...|-.........|+.-++..+|.. .
T Consensus 835 aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~e 912 (1238)
T KOG1127|consen 835 AQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDE 912 (1238)
T ss_pred hhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHH
Confidence 88777776655 3557778888888888899999999999988875322 455565555555677888888888776 2
Q ss_pred HH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 040136 582 IH--RGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE---------GIYPDAVTYNTLISWHFKEGLFDDAFLILHK 650 (681)
Q Consensus 582 ~~--~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 650 (681)
.. .|-.|+..-|-.........|+.++-+...+++-.. +.+-+...|...+...-+.+.+.+|.....+
T Consensus 913 l~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~R 992 (1238)
T KOG1127|consen 913 LCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATR 992 (1238)
T ss_pred hhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 22 244555555555445555666666654444433221 3344466777777777777777777776666
Q ss_pred HH
Q 040136 651 GV 652 (681)
Q Consensus 651 ~~ 652 (681)
+.
T Consensus 993 li 994 (1238)
T KOG1127|consen 993 LI 994 (1238)
T ss_pred HH
Confidence 54
No 92
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.04 E-value=7.5e-05 Score=85.71 Aligned_cols=339 Identities=12% Similarity=0.039 Sum_probs=208.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCC----C----C----hHHHHHHHHHHH
Q 040136 300 LCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPS----A----N----VVLLNTVINGYV 367 (681)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~----~----~~~~~~l~~~~~ 367 (681)
....|+++.+..++..+.......+..........+...|+++++...+..... . + ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 445677777777666542211112223334445556677888888877765432 1 1 112223344567
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhcCC---Cc--CHhhHHHHHHHHH
Q 040136 368 ISGRFDEAKAIFYDSMLSVGCIPDV----FTFNILIHGLCKQRRFGSALELVNAMAVKGC---EP--NIVTYTILVDGFC 438 (681)
Q Consensus 368 ~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~---~~--~~~~~~~ll~~~~ 438 (681)
..|++++|.. ..+.........+. ...+.+...+...|+++.|...+++.....- .+ ....+..+...+.
T Consensus 464 ~~g~~~~A~~-~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 464 NDGDPEEAER-LAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred hCCCHHHHHH-HHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 7899999998 66655442111121 2345556667789999999999988765311 11 1234556667788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C
Q 040136 439 KEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRG--C 516 (681)
Q Consensus 439 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~ 516 (681)
..|+++.|...+++.... ...............+..+...+...|++++|...+.+..... .
T Consensus 543 ~~G~~~~A~~~~~~al~~----------------~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 606 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQL----------------IEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY 606 (903)
T ss_pred HCCCHHHHHHHHHHHHHH----------------HHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc
Confidence 899999999988776542 1111000001122344555666778899999999988875531 1
Q ss_pred CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHH--H--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040136 517 PL--DEITYNGLIKALCNAGAVDKGLGLFEEMMRKG--IKPSSI--S--CNILINGLCRTRKANTALEFLRDMIHRGLTP 588 (681)
Q Consensus 517 ~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~--~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 588 (681)
.+ ....+..+...+...|++++|...++++.... ...... . ....+..+...|+.+.|.+.+..........
T Consensus 607 ~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~ 686 (903)
T PRK04841 607 QPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFAN 686 (903)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCcc
Confidence 11 23344456667788999999999998886531 111111 0 0112244556889999999987765421111
Q ss_pred CH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 040136 589 DI---VTYNSLINGLCKMGCIQEALNLFDKLQAE----GIYPD-AVTYNTLISWHFKEGLFDDAFLILHKGVANG 655 (681)
Q Consensus 589 ~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 655 (681)
.. ..+..+..++...|+.++|...++++... |...+ ..+...+..++.+.|+.++|...+.++++..
T Consensus 687 ~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 687 NHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 11 11345677788999999999999988764 32222 3456677788999999999999999998853
No 93
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=5.9e-06 Score=84.55 Aligned_cols=411 Identities=14% Similarity=0.110 Sum_probs=198.7
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCC--------CCCHHhHHHHHHHH
Q 040136 124 LGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGC--------QPTFRSYNVVLDVL 195 (681)
Q Consensus 124 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~~ll~~~ 195 (681)
|..-|+.+.|.+-+.-++ +..+|..+.+.+.+..+.+-|.-.+-.|....|. .++ ..-.-+...-
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 445566666655555443 3346667777666666666665555444422221 111 1111111222
Q ss_pred HhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 040136 196 VAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEAL 275 (681)
Q Consensus 196 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 275 (681)
.+.|..++|..+|.+-.+ |..|=+.|-..|.+++|.++-+.--+... ..||.....-+-..++.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHH
Confidence 345556666666655443 33344445555666666665544322211 234444444445555566666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 040136 276 MLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSAN 355 (681)
Q Consensus 276 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 355 (681)
+.|++.-. +--..+..|. .++....++.+++. |...|.--...+-..|+.+.|+.+|...++
T Consensus 879 eyyEK~~~----hafev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-- 940 (1416)
T KOG3617|consen 879 EYYEKAGV----HAFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD-- 940 (1416)
T ss_pred HHHHhcCC----hHHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh--
Confidence 55554210 1111111110 12222222222222 334455555556667888888887776543
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHH
Q 040136 356 VVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVD 435 (681)
Q Consensus 356 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 435 (681)
|-.+++..+-.|+.++|-. +-+ +. -|......+.+.|...|++.+|...|.+... +...|.
T Consensus 941 ---~fs~VrI~C~qGk~~kAa~-iA~---es---gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIR 1001 (1416)
T KOG3617|consen 941 ---YFSMVRIKCIQGKTDKAAR-IAE---ES---GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIR 1001 (1416)
T ss_pred ---hhhheeeEeeccCchHHHH-HHH---hc---ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHH
Confidence 5566666777788887777 322 22 2556667778888888888888887766542 223333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----
Q 040136 436 GFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVND----- 510 (681)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----- 510 (681)
.| +.+++++-+.-+.-|.. ..+.-.|...|++..- -....+..|.+.|.+.+|+++-=+
T Consensus 1002 lc-KEnd~~d~L~nlal~s~-------~~d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQf~ 1065 (1416)
T KOG3617|consen 1002 LC-KENDMKDRLANLALMSG-------GSDLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQFS 1065 (1416)
T ss_pred HH-HhcCHHHHHHHHHhhcC-------chhHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhcccH
Confidence 22 22222222111111110 1122222233322210 112233446666666666554211
Q ss_pred ---HHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-C
Q 040136 511 ---MLFR--GCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIH-R 584 (681)
Q Consensus 511 ---~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~ 584 (681)
++.. ....|+...+.-.+.++...++++|..++-...+. ..-+. +|...+..-..++-+.|.- +
T Consensus 1066 aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~---------~~Alq-lC~~~nv~vtee~aE~mTp~K 1135 (1416)
T KOG3617|consen 1066 ALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF---------SGALQ-LCKNRNVRVTEEFAELMTPTK 1135 (1416)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHHH-HHhcCCCchhHHHHHhcCcCc
Confidence 1111 22346666666677777777777777776655442 11121 2333333333333333321 1
Q ss_pred CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040136 585 GLTPDI----VTYNSLINGLCKMGCIQEALNLFDKL 616 (681)
Q Consensus 585 ~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 616 (681)
+-.|+. .....+...|.++|.+..|-+-|-++
T Consensus 1136 d~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1136 DDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred CCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 122332 34566677788888887776655544
No 94
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.03 E-value=3e-07 Score=89.07 Aligned_cols=150 Identities=10% Similarity=-0.111 Sum_probs=81.1
Q ss_pred ChHHHHHHHHHcHhhcCCCCC--HHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 040136 164 VPGQATRLLLDMKSVYGCQPT--FRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACS 241 (681)
Q Consensus 164 ~~~~A~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 241 (681)
..+.++.-+.++.......|+ ...|..+...+...|+.++|...|++.++... .+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 444455555444422111222 23455555556666666666666666666532 245566666666666666666666
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 242 LLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRML 317 (681)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 317 (681)
.|+...+.. +.+..+|..+..++...|++++|.+.+++..+.. |+..............++.++|...+.+..
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 666666654 3345566666666666667777776666666542 222111111122234556666666665544
No 95
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.97 E-value=9.3e-05 Score=77.20 Aligned_cols=522 Identities=14% Similarity=0.106 Sum_probs=283.8
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 040136 91 PLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATR 170 (681)
Q Consensus 91 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 170 (681)
.++...|+.-...+++++|-.+...++..+. +.|.|+.++|..+++.....+.. +..+...+...|.+.|+.++|..
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 4678889998988888876544444444444 67889999999888887776654 77888889999999999999999
Q ss_pred HHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC----------ChhHHH
Q 040136 171 LLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVN----------EVDSAC 240 (681)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g----------~~~~A~ 240 (681)
+|++..+. -|+......+..+|++.+++.+-.+.--+|.+. .+-+.+.+=++++.....- -..-|.
T Consensus 99 ~Ye~~~~~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 99 LYERANQK---YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 99998833 455555556666777777766554444444443 2335566666666554331 123466
Q ss_pred HHHHHHHhCC-CCCChhhHHHHHHHHHhcCChhHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 241 SLLRDMTKHG-CVPNSVVYQTLIHALSKSNRVSEALMLL-EEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLV 318 (681)
Q Consensus 241 ~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~-~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 318 (681)
+.++.+.+.+ -.-+..-.......+-..|.+++|++++ ....+.-...+...-+.-+..+...+++.+..++..++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 6777776654 1122222333345566788899999888 3444432233444444556667778888888888888887
Q ss_pred CCCCCCcccHHHHHHHHH----------------hcCCHHHHHHHHhhcCC---CChH-HHHHHHHHHHhcCCHHHHHHH
Q 040136 319 RGFTPDDITYGVLMHGLC----------------RTGRVDEARALLNKIPS---ANVV-LLNTVINGYVISGRFDEAKAI 378 (681)
Q Consensus 319 ~~~~~~~~~~~~l~~~~~----------------~~g~~~~A~~~~~~~~~---~~~~-~~~~l~~~~~~~g~~~~a~~~ 378 (681)
.|.. | |...++.+. ..+..+...+...+... +++. ++-.+..-+..-|+.+++...
T Consensus 255 k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~ 330 (932)
T KOG2053|consen 255 KGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSY 330 (932)
T ss_pred hCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHH
Confidence 7543 2 333222211 11223333333322222 2222 122222223345777776654
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHh-------hHHHHHHHHHhcCC-----HHHH
Q 040136 379 FYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIV-------TYTILVDGFCKEGQ-----LEKA 446 (681)
Q Consensus 379 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~ll~~~~~~g~-----~~~A 446 (681)
+++.. |..| .|..=+..|...=..+.-..++...... .++.. -+...+..-.-.|. -+.-
T Consensus 331 y~~kf---g~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i 402 (932)
T KOG2053|consen 331 YFKKF---GDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSI 402 (932)
T ss_pred HHHHh---CCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHH
Confidence 44433 3222 1111222222222222333333333221 11111 01111111111221 1111
Q ss_pred HHHHHHHH---HCCCCCCccccHHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHHHhcCCHH---HHHHHHHHH
Q 040136 447 NIIINEML---AKGLSLNTGDRIEEALGLYQDMLLEGVTANT---------VTYNTLIHAFLRRGSLH---EAHKLVNDM 511 (681)
Q Consensus 447 ~~~~~~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~li~~~~~~g~~~---~A~~~~~~~ 511 (681)
..++.+.. +.|... .++.-|+. -+-+.|++.|.+.++.. +|+-+++..
T Consensus 403 ~a~~~kl~~~ye~gls~-----------------~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~g 465 (932)
T KOG2053|consen 403 LAYVRKLKLTYEKGLSL-----------------SKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENG 465 (932)
T ss_pred HHHHHHHHHHHhccccc-----------------cccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 22221111 111000 00111121 23467788888888755 566666666
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-
Q 040136 512 LFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDI- 590 (681)
Q Consensus 512 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~- 590 (681)
.... +.|..+-..++..|+-.|-+..|..+|+.+--+.+..|...|- +...+...|++..+...++....- ...+.
T Consensus 466 lt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkf-y~~~~k 542 (932)
T KOG2053|consen 466 LTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKF-YDSSLK 542 (932)
T ss_pred hhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHH-Hhhhhh
Confidence 6553 6677777889999999999999999999987776666655443 344556677888777777765542 11111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH---HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 591 VTYNSLINGLCKMGCIQEALNLF---DKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGV 652 (681)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~---~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (681)
.+-..+..+| +.|.+.+..++. +++......--..+-+..++.++..++.++-...++.|.
T Consensus 543 E~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 543 ETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred hhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 1222223333 456665544432 233222111123344566677777888877777777665
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.93 E-value=4.6e-08 Score=93.10 Aligned_cols=82 Identities=17% Similarity=0.171 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 040136 500 SLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKA-NTALEFL 578 (681)
Q Consensus 500 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~ 578 (681)
.+.+|..+|+++.+. .++++.+.+.+..++...|++++|..++.++.+.+.. +..+...++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 345555555554433 3444455555555555555555555555554443222 334444444444444444 3344444
Q ss_pred HHHHH
Q 040136 579 RDMIH 583 (681)
Q Consensus 579 ~~~~~ 583 (681)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 44443
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.93 E-value=5.5e-06 Score=83.61 Aligned_cols=203 Identities=13% Similarity=0.097 Sum_probs=121.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040136 428 VTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKL 507 (681)
Q Consensus 428 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 507 (681)
.....+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~------------------------p~~~~~~~~la~i~~~~g~~~eA~~~ 170 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALELN------------------------PDDAWAVHAVAHVLEMQGRFKEGIAF 170 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------------------------CCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 344455567778888888888888877753 22556677778888888888888888
Q ss_pred HHHHHhCCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--H
Q 040136 508 VNDMLFRGC-PLDE--ITYNGLIKALCNAGAVDKGLGLFEEMMRKGI-KPSSISC-N--ILINGLCRTRKANTALEF--L 578 (681)
Q Consensus 508 ~~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~-~--~l~~~~~~~g~~~~A~~~--~ 578 (681)
+++...... .++. ..|..+...+...|++++|..+++++..... .+..... + .++.-+...|....+.+. +
T Consensus 171 l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~ 250 (355)
T cd05804 171 MESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDL 250 (355)
T ss_pred HHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHH
Confidence 888776531 1222 3455677778888888888888888764322 1112111 1 233333444443333332 1
Q ss_pred HHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---C-----CHHHHHHHHHHHHhcCChhHHHHHH
Q 040136 579 RDMIHRGLT--PDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIY---P-----DAVTYNTLISWHFKEGLFDDAFLIL 648 (681)
Q Consensus 579 ~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p-----~~~~~~~l~~~~~~~g~~~~A~~~~ 648 (681)
......... ...........++...|+.+.|..+++.+...... - .........-++...|++++|.+.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L 330 (355)
T cd05804 251 ADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELL 330 (355)
T ss_pred HHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHH
Confidence 111111001 11122224566777888999999999888764211 0 1222233334567889999999999
Q ss_pred HHHHHC
Q 040136 649 HKGVAN 654 (681)
Q Consensus 649 ~~~~~~ 654 (681)
.+.+..
T Consensus 331 ~~al~~ 336 (355)
T cd05804 331 GPVRDD 336 (355)
T ss_pred HHHHHH
Confidence 888764
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.93 E-value=7.5e-06 Score=82.62 Aligned_cols=310 Identities=11% Similarity=-0.049 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCC-CCCH-HHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHH
Q 040136 114 FDVYYVLIDKLGANKEFKVIDSVLLQMKEEGI-ICRE-SLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVV 191 (681)
Q Consensus 114 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 191 (681)
...|..+...+...|+.+.+...+........ ..+. .........+...|++++|...+++.... .+.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~- 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL- 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-
Confidence 34455555555566666666555555444332 1121 12222333445667777777777666522 1333333332
Q ss_pred HHHHHhc----CCcCcHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 040136 192 LDVLVAG----NCHKVAPNLFYDMLSKGISPT-VYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALS 266 (681)
Q Consensus 192 l~~~~~~----~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 266 (681)
...+... +....+.+.+.. .....|+ ......+...+...|++++|.+.+++..+.. +.+...+..+..++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~ 159 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE 159 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 2222222 333333333332 1111122 2233344455566666666666666666654 444555666666666
Q ss_pred hcCChhHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHH
Q 040136 267 KSNRVSEALMLLEEMILMGC-TSDV--QTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDE 343 (681)
Q Consensus 267 ~~~~~~~A~~~~~~m~~~~~-~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 343 (681)
..|++++|...+++...... .++. ..|..+...+...|++++|..++++...... .......+..
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~--~~~~~~~~~~---------- 227 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA--ESDPALDLLD---------- 227 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc--CCChHHHHhh----------
Confidence 66666666666666654321 1221 2233455566666666666666666543211 0111100000
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHH--HHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040136 344 ARALLNKIPSANVVLLNTVINGYVISGRFDEAKAI--FYDSMLSVGC-IPDVFTFNILIHGLCKQRRFGSALELVNAMAV 420 (681)
Q Consensus 344 A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~--~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 420 (681)
...++.-+...|....+..+ +......... ............++...|+.+.|..+++.+..
T Consensus 228 ---------------~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 228 ---------------AASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred ---------------HHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 00111111222222222220 1111111000 11112223456677888999999999988766
Q ss_pred cCCC---c-----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 421 KGCE---P-----NIVTYTILVDGFCKEGQLEKANIIINEMLAK 456 (681)
Q Consensus 421 ~~~~---~-----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 456 (681)
.... - .+...-...-++...|++++|...+...+..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 293 RASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3222 0 1122222233456789999999988877654
No 99
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.93 E-value=1.2e-05 Score=81.18 Aligned_cols=107 Identities=17% Similarity=0.290 Sum_probs=59.5
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChH--HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 040136 332 MHGLCRTGRVDEARALLNKIPSANVV--LLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFG 409 (681)
Q Consensus 332 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 409 (681)
+.+.....++.+|+.+++.+...++. -|..+.+.|...|+++-|.+ +|.. ...++-.|.+|.+.|+++
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~-lf~e---------~~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEE-LFTE---------ADLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHH-HHHh---------cchhHHHHHHHhccccHH
Confidence 34444556666666666666553332 35555666666677666666 3321 123445566667777777
Q ss_pred HHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHH
Q 040136 410 SALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIII 450 (681)
Q Consensus 410 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 450 (681)
+|.++-++.. |....+..|-.-..-+-+.|++.+|.+++
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 7666655443 22334445555555555666666665554
No 100
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.90 E-value=9.4e-05 Score=72.68 Aligned_cols=190 Identities=12% Similarity=0.164 Sum_probs=139.0
Q ss_pred cccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 040136 463 GDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRG---SLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKG 539 (681)
Q Consensus 463 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 539 (681)
....+++..++++....-..-+..+|..+...--..- ..+....+++++...-...-..+|..+++.-.+..-+..|
T Consensus 306 ~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaa 385 (656)
T KOG1914|consen 306 KSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAA 385 (656)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHH
Confidence 3445556666666554333334455554443221111 2566667777766553333345788888888888889999
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 540 LGLFEEMMRKGIKP-SSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 540 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
+.+|.++.+.+..+ ++..+++++..|| +++.+.|.++|+--+.. ...+..-....+.-+...|+-..|..+|++.+.
T Consensus 386 R~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 386 RKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLT 463 (656)
T ss_pred HHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 99999999987666 7788888888776 67889999999987765 333445556788888999999999999999999
Q ss_pred CCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040136 619 EGIYPD--AVTYNTLISWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 619 ~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
.++.|+ ..+|..+++.-...|+++.+.++-+++...
T Consensus 464 s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 464 SVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred ccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 876666 579999999999999999999988887763
No 101
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=3.3e-05 Score=75.92 Aligned_cols=220 Identities=15% Similarity=0.143 Sum_probs=123.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHH------
Q 040136 359 LNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTI------ 432 (681)
Q Consensus 359 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------ 432 (681)
...+.....+..+++.|++ -+....... -+..-++....+|...|.+..+........+.|.. ...-|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q-~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~ 302 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQ-HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALA 302 (539)
T ss_pred HHHHHHHHHHhhhHHHHHH-HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHH
Confidence 4456667777778888887 666555543 35555666777888888888888777776666522 1222332
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 040136 433 -LVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLE-GVTANT-VTYNTLIHAFLRRGSLHEAHKLVN 509 (681)
Q Consensus 433 -ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~ 509 (681)
+..+|.+.++++.++..|.+.+.....++......++.+........ -+.|.. .-...-...+.+.|++..|.+.|.
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 33356667788888888888777655544433333333333222211 111111 111222444556666666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 510 DMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHR 584 (681)
Q Consensus 510 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 584 (681)
+++... |.|...|.--.-+|.+.|.+..|+.-.+..++.. ++....|..=+.++....+++.|++.|.+.++.
T Consensus 383 eAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 383 EAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666653 5566666666666666666666666555555542 112333433344444455566666666666553
No 102
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.86 E-value=9e-06 Score=74.84 Aligned_cols=313 Identities=13% Similarity=0.124 Sum_probs=209.8
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHH---HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHH-HHH
Q 040136 324 DDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVI---NGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFN-ILI 399 (681)
Q Consensus 324 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-~ll 399 (681)
++.-...+...+...|++.+|+.-|....+.|+..|.++. ..|...|+..-|+. =+....+ .+||...-. .-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~-Dl~rVle--lKpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQ-DLSRVLE--LKPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchh-hHHHHHh--cCccHHHHHHHhc
Confidence 3344456788888899999999999999888877777664 46888888888887 4444544 356653321 123
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhc
Q 040136 400 HGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLE 479 (681)
Q Consensus 400 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 479 (681)
..+.+.|.++.|..-|+.++... |+.. ....++.+.-..++-..+..+++.. ...|+...+++....+++-
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~---~~~eaqskl~~~~e~~~l~~ql~s~----~~~GD~~~ai~~i~~llEi 184 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNG---LVLEAQSKLALIQEHWVLVQQLKSA----SGSGDCQNAIEMITHLLEI 184 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcc---hhHHHHHHHHhHHHHHHHHHHHHHH----hcCCchhhHHHHHHHHHhc
Confidence 45778999999999999988773 3211 1122222222222222222222211 1124444555555555544
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040136 480 GVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCN 559 (681)
Q Consensus 480 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 559 (681)
. +.+...|..-..+|...|++..|+.-++...+.. ..+..++-.+-..+...|+.+.++...++.++. .||...+-
T Consensus 185 ~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf 260 (504)
T KOG0624|consen 185 Q-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCF 260 (504)
T ss_pred C-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHH
Confidence 3 3488888888999999999999999888887764 456666777778888999999999988888875 45543221
Q ss_pred ----HH---------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040136 560 ----IL---------INGLCRTRKANTALEFLRDMIHRGLTPDIVT---YNSLINGLCKMGCIQEALNLFDKLQAEGIYP 623 (681)
Q Consensus 560 ----~l---------~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 623 (681)
.+ +......+++.++++-.+...+.......+. +..+-.++...|++.+|++.-.+.++ +.|
T Consensus 261 ~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~ 338 (504)
T KOG0624|consen 261 PFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDP 338 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCc
Confidence 11 2223456777777777777776432212233 33455667788899999999999988 466
Q ss_pred C-HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040136 624 D-AVTYNTLISWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 624 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
| ..++..-..+|.-...+++|+.-|+++.+.
T Consensus 339 ~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 339 DDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 5 778888889999999999999999999873
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.86 E-value=5e-07 Score=88.98 Aligned_cols=247 Identities=14% Similarity=0.092 Sum_probs=173.1
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcC
Q 040136 401 GLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEG 480 (681)
Q Consensus 401 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 480 (681)
-+.+.|++.+|.-.|+...... +-+...|..|.......++-..|+..+.+.++.++
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP---------------------- 350 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDP---------------------- 350 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC----------------------
Confidence 3567788888888888877663 33567777777777777777777777777766542
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-------HHHHHcCCHHHHHHHHHHHH-HCCCC
Q 040136 481 VTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLI-------KALCNAGAVDKGLGLFEEMM-RKGIK 552 (681)
Q Consensus 481 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~g~~~~A~~~~~~~~-~~~~~ 552 (681)
.|.....+|.-.|...|.-..|++.++..+....+ -...-..=. ..+.....+....++|-++. ..+..
T Consensus 351 --~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~ 427 (579)
T KOG1125|consen 351 --TNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTK 427 (579)
T ss_pred --ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 26777788888888888888888888888665311 100000000 01111112334444554444 44545
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 040136 553 PSSISCNILINGLCRTRKANTALEFLRDMIHRGLTP-DIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNT 630 (681)
Q Consensus 553 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ 630 (681)
+|+.....|.-.|.-.|++++|.+.|+.++.. .| |..+||.|...++...+.++|+..|+++++ +.|+ +.+...
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyN 503 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYN 503 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehh
Confidence 77888888888899999999999999999984 45 678899999999999999999999999998 6888 446667
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC---------CCCCCHHHHHHHHHHHHhcCccc
Q 040136 631 LISWHFKEGLFDDAFLILHKGVAN---------GFVPNDATWYILVRNLVKEINME 677 (681)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~~~---------g~~~~~~~~~~ll~~~~~~g~~~ 677 (681)
|.-.|...|.+.||.+.|-+++.- +..++...|..|-.++.-.++.|
T Consensus 504 lgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 504 LGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 888899999999999988877652 11223457777776666665544
No 104
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.83 E-value=9.2e-05 Score=68.42 Aligned_cols=312 Identities=12% Similarity=0.054 Sum_probs=171.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHH
Q 040136 221 YTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTF-NDVIHG 299 (681)
Q Consensus 221 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~-~~li~~ 299 (681)
.-..-+.+.+...|++..|+.-|....+.+ +.+-.++-.-...|...|+...|+.=|.+.++. +||-..- ..-...
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchh
Confidence 334445555666666666666666666543 112222223334566666666666666666654 4553221 112334
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCc--c------------cHHHHHHHHHhcCCHHHHHHHHhhcCC---CChHHHHHH
Q 040136 300 LCKVNRIHEAAKLVDRMLVRGFTPDD--I------------TYGVLMHGLCRTGRVDEARALLNKIPS---ANVVLLNTV 362 (681)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~--~------------~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 362 (681)
+.++|.++.|..-|+.++++....+. . .....+..+...|+...|+.....+.+ -+...+..-
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~R 195 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQAR 195 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHH
Confidence 55666677776666666655221110 0 112233445566777777777666655 445556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCC
Q 040136 363 INGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQ 442 (681)
Q Consensus 363 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 442 (681)
..+|...|.+..|+. =.+...+... -+..++..+-..+...|+.+.++...++.++. .||....... |-+...
T Consensus 196 akc~i~~~e~k~AI~-Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~---YKklkK 268 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIH-DLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPF---YKKLKK 268 (504)
T ss_pred HHHHHhcCcHHHHHH-HHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHH---HHHHHH
Confidence 777777777777776 3333333322 24445555666677777777777777777655 4554322111 111122
Q ss_pred HHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 040136 443 LEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTV---TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLD 519 (681)
Q Consensus 443 ~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 519 (681)
+.+.+.-.++.++. +.+.++++..+...+..+..... .+..+-.++...|++.+|++.-.+++... +.|
T Consensus 269 v~K~les~e~~ie~-------~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~d 340 (504)
T KOG0624|consen 269 VVKSLESAEQAIEE-------KHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDD 340 (504)
T ss_pred HHHHHHHHHHHHhh-------hhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chH
Confidence 22222222222221 34555555555555443332222 23345556667778888888888887762 445
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 040136 520 EITYNGLIKALCNAGAVDKGLGLFEEMMRKG 550 (681)
Q Consensus 520 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 550 (681)
..++.--..+|.-...++.|+.-|+.+.+.+
T Consensus 341 v~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 341 VQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 7777777788887888888888888887753
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.82 E-value=5e-05 Score=87.13 Aligned_cols=370 Identities=12% Similarity=0.010 Sum_probs=214.7
Q ss_pred HHHHHhcCCcCcHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 040136 192 LDVLVAGNCHKVAPNLFYDMLSKGISPT-VYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNR 270 (681)
Q Consensus 192 l~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 270 (681)
...+...|++.+|....... +..+. ..............|+++.+...++.+.......+..........+...|+
T Consensus 348 a~~~~~~g~~~~Al~~a~~a---~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~ 424 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAA---GDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHR 424 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHC---CCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCC
Confidence 34455666666665544332 21110 011112223344567777777777665322111223333344455567788
Q ss_pred hhHHHHHHHHHHHCCC------CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHhc
Q 040136 271 VSEALMLLEEMILMGC------TSDV--QTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDD----ITYGVLMHGLCRT 338 (681)
Q Consensus 271 ~~~A~~~~~~m~~~~~------~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 338 (681)
++++...+......-- .+.. .....+...+...|++++|...+++....-...+. ...+.+...+...
T Consensus 425 ~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 504 (903)
T PRK04841 425 YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK 504 (903)
T ss_pred HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc
Confidence 8888888877654210 1111 12222334456788888888888887653111111 2345566677788
Q ss_pred CCHHHHHHHHhhcCC-------CC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHH
Q 040136 339 GRVDEARALLNKIPS-------AN--VVLLNTVINGYVISGRFDEAKAIFYDSMLS----VGCI--P-DVFTFNILIHGL 402 (681)
Q Consensus 339 g~~~~A~~~~~~~~~-------~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~--p-~~~~~~~ll~~~ 402 (681)
|++++|...+++... .. ...+..+...+...|++++|.. .++.... .+.. + ....+..+...+
T Consensus 505 G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 505 GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYE-TQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 888888888776653 11 2345556677888899999888 5444332 2211 1 223344555667
Q ss_pred HhcCChhHHHHHHHHHHhcC--CCc--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHh
Q 040136 403 CKQRRFGSALELVNAMAVKG--CEP--NIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLL 478 (681)
Q Consensus 403 ~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 478 (681)
...|++++|...+++..... ..+ ....+..+...+...|+++.|...+.+.......
T Consensus 584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~------------------- 644 (903)
T PRK04841 584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGN------------------- 644 (903)
T ss_pred HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-------------------
Confidence 77899999999988875531 112 2334445666778899999999888776542100
Q ss_pred cCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----
Q 040136 479 EGVTANT--VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDE---ITYNGLIKALCNAGAVDKGLGLFEEMMRK---- 549 (681)
Q Consensus 479 ~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 549 (681)
.+..... ......+..+...|+.+.|.+.+............ ..+..+..++...|++++|...++++...
T Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~ 724 (903)
T PRK04841 645 GRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSL 724 (903)
T ss_pred ccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 0000000 00011224455678999999988775543211111 11345667788899999999999988763
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 550 GIKPS-SISCNILINGLCRTRKANTALEFLRDMIHR 584 (681)
Q Consensus 550 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 584 (681)
|...+ ..+...+..++...|+.++|...+.+..+.
T Consensus 725 g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 725 RLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 32222 245667778888999999999999998875
No 106
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=1.9e-05 Score=71.31 Aligned_cols=302 Identities=13% Similarity=0.039 Sum_probs=176.4
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhCCChHHHH
Q 040136 91 PLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFI-LIMKYYGRGGVPGQAT 169 (681)
Q Consensus 91 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~ 169 (681)
..++..|.+++..-....+ .+...++.+..++.+..++..|...++++-...+ ...-|. --...+-+.+.+.+|+
T Consensus 23 d~ry~DaI~~l~s~~Er~p--~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P--~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSP--RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP--ELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HhhHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh--HHHHHHHHHHHHHHHhcccHHHH
Confidence 3567777777765443322 3666677777888888888888888888877653 333332 2244455788888888
Q ss_pred HHHHHcHhhcCCCCCHHhHHHHHH--HHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 170 RLLLDMKSVYGCQPTFRSYNVVLD--VLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMT 247 (681)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 247 (681)
++...|.. .++...-..-+. .....+++-.+..++++....| +..+.+...-...+.|+++.|.+-|....
T Consensus 99 rV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 99 RVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred HHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHH
Confidence 88887772 233332222222 2345677888888887765433 34444555555567888888888888877
Q ss_pred hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040136 248 KHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTF----NDVIHGLCKVNRIHEAAKLVDRMLVRGFTP 323 (681)
Q Consensus 248 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 323 (681)
+.+.-....+||..+ +..+.|+++.|++...++.++|++..+..- ...+++- ..|+ -..+....
T Consensus 172 qvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgN---t~~lh~Sa------- 239 (459)
T KOG4340|consen 172 QVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGN---TLVLHQSA------- 239 (459)
T ss_pred hhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccc---hHHHHHHH-------
Confidence 754333355666444 445668888888888888887754322210 0000000 0000 00000000
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 040136 324 DDITYGVLMHGLCRTGRVDEARALLNKIPS-----ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNIL 398 (681)
Q Consensus 324 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 398 (681)
-...+|.-..++.+.|+.+.|.+.+-.|+. .|+++...+.-.-+. +++.+..+ -+..+...+. -...||..+
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~-~~p~~g~~-KLqFLL~~nP-fP~ETFANl 316 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMD-ARPTEGFE-KLQFLLQQNP-FPPETFANL 316 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhccc-CCccccHH-HHHHHHhcCC-CChHHHHHH
Confidence 011233344556788889999988888876 566666555433222 22222222 1223333332 345678888
Q ss_pred HHHHHhcCChhHHHHHHHHH
Q 040136 399 IHGLCKQRRFGSALELVNAM 418 (681)
Q Consensus 399 l~~~~~~~~~~~A~~~~~~~ 418 (681)
+-.||+..-++.|.+++.+-
T Consensus 317 LllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhC
Confidence 88889988888888887553
No 107
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=1.4e-05 Score=71.20 Aligned_cols=248 Identities=12% Similarity=0.099 Sum_probs=145.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 040136 300 LCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIF 379 (681)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 379 (681)
+.-.|.+..++.......... -+...-..+.++|...|++.....-...-..+.......+......-++.++.+.-+
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l 95 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASL 95 (299)
T ss_pred HHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHH
Confidence 334455554444333332221 223333334455555555443333222222233333333333333344444444446
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040136 380 YDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLS 459 (681)
Q Consensus 380 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 459 (681)
.+.+.......+......-...|+..|++++|++...... +......=+..+.+..+.+-|...+++|.+-+
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id-- 167 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID-- 167 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--
Confidence 6666665555454444444556788888888888776522 33333333455666777777777777776642
Q ss_pred CCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 040136 460 LNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLR----RGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGA 535 (681)
Q Consensus 460 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 535 (681)
+..+.+-|..++.+ .+.+.+|.-+|++|.+. .+|+..+.+....++...|+
T Consensus 168 ------------------------ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 168 ------------------------EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred ------------------------hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 55566666666543 34688888889888876 58888888888888888899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 040136 536 VDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANT-ALEFLRDMIH 583 (681)
Q Consensus 536 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 583 (681)
+++|..+++.++.+... ++.+...++-.-...|...+ ..+.+.++..
T Consensus 223 ~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99999999888887544 56666666666666666544 4455555554
No 108
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.76 E-value=3.7e-07 Score=86.96 Aligned_cols=249 Identities=15% Similarity=0.118 Sum_probs=123.6
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 040136 230 LCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEA 309 (681)
Q Consensus 230 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 309 (681)
+.-.|++..++.-.+ .....-..+......+.+++...|+++.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 334566666665444 222221222334445666777777665433 3332222 45555554444433333444445
Q ss_pred HHHHHHHHHCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 040136 310 AKLVDRMLVRGFTP-DDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGC 388 (681)
Q Consensus 310 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 388 (681)
+.-+++....+... +.........++...|++++|++++.+. .+.......+..|.+.++++.|.+ .++.|.+..
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k-~l~~~~~~~- 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEK-ELKNMQQID- 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHH-HHHHHHCCS-
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHH-HHHHHHhcC-
Confidence 44444433332221 2222223334455667777777766654 445555556666667777777776 556665532
Q ss_pred CCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccc
Q 040136 389 IPDVFTFNILIHGLCK----QRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGD 464 (681)
Q Consensus 389 ~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 464 (681)
.| .+...+..++.. .+.+.+|..+|+++.+. +.+++.+.+.+..++...|++++|..++.+....+
T Consensus 162 -eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~------- 231 (290)
T PF04733_consen 162 -ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD------- 231 (290)
T ss_dssp -CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--------
T ss_pred -Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-------
Confidence 22 333334443332 23566777777776543 34566666666666666777777766666654432
Q ss_pred cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhC
Q 040136 465 RIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSL-HEAHKLVNDMLFR 514 (681)
Q Consensus 465 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~ 514 (681)
+-++.+...++.+....|+. +.+.+.+.++...
T Consensus 232 -----------------~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 -----------------PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred -----------------cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 12445555556555566655 4455555555543
No 109
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=4.8e-06 Score=82.28 Aligned_cols=256 Identities=15% Similarity=0.124 Sum_probs=119.4
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHH
Q 040136 366 YVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEK 445 (681)
Q Consensus 366 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 445 (681)
+.+.|++.+|.- +|+...+.. +-+...|..|.......++-..|+..+++..+.. +.+......|.-.|...|.-..
T Consensus 295 lm~nG~L~~A~L-afEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAAL-AFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHH-HHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 344455555544 444444432 2245555555555555666566666666665542 2345555666666666666666
Q ss_pred HHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhCCCCCCHHHHH
Q 040136 446 ANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDM-LFRGCPLDEITYN 524 (681)
Q Consensus 446 A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~ 524 (681)
|...|+.-+...+.... ....+. +...-.. ..+..........++|-++ ...+..+|+.+..
T Consensus 372 Al~~L~~Wi~~~p~y~~-------------l~~a~~--~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~ 434 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVH-------------LVSAGE--NEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQS 434 (579)
T ss_pred HHHHHHHHHHhCccchh-------------ccccCc--cccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHh
Confidence 66666655443211100 000000 0000000 0000011112222233222 2222234555555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhc
Q 040136 525 GLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDI-VTYNSLINGLCKM 603 (681)
Q Consensus 525 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~ 603 (681)
.|.-.|.-.|++++|++.|+.++...+. |..+||-|...++...+.++|+..|++.++ +.|+. .+.-.|.-+|...
T Consensus 435 ~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNl 511 (579)
T KOG1125|consen 435 GLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNL 511 (579)
T ss_pred hhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhh
Confidence 5555566666666666666666654221 445566666666666666666666666665 34442 2233344455566
Q ss_pred CCHHHHHHHHHHHHHC---------CCCCCHHHHHHHHHHHHhcCChhHH
Q 040136 604 GCIQEALNLFDKLQAE---------GIYPDAVTYNTLISWHFKEGLFDDA 644 (681)
Q Consensus 604 g~~~~A~~~~~~~~~~---------~~~p~~~~~~~l~~~~~~~g~~~~A 644 (681)
|.+++|.+.|-.++.. +-.++..+|.+|=.++.-.++.|-+
T Consensus 512 G~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 512 GAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred hhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 6666666655544432 0111234555555555555554433
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=1.3e-05 Score=81.38 Aligned_cols=216 Identities=18% Similarity=0.167 Sum_probs=148.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHH
Q 040136 359 LNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFC 438 (681)
Q Consensus 359 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 438 (681)
-..+...+...|-..+|+. +++.+ ..|..+|.+|+..|+..+|..+..+..++ +|+...|..+.+...
T Consensus 401 q~~laell~slGitksAl~-I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALV-IFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHcchHHHHHH-HHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 4456778888899999988 66543 35677888999999999999998888874 788888888888877
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 040136 439 KEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPL 518 (681)
Q Consensus 439 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 518 (681)
...-+++|.++.+....+ .-..+.....+.+++.++.+.++.-.+.+ +.
T Consensus 469 d~s~yEkawElsn~~sar------------------------------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-pl 517 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR------------------------------AQRSLALLILSNKDFSEADKHLERSLEIN-PL 517 (777)
T ss_pred ChHHHHHHHHHhhhhhHH------------------------------HHHhhccccccchhHHHHHHHHHHHhhcC-cc
Confidence 777788888887765432 11111112233567777777777666653 55
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 519 DEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLIN 598 (681)
Q Consensus 519 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 598 (681)
...+|-.+..+..+.++++.|.+.|.......+ -+...||.+-.+|.+.++..+|...+++..+.+ .-+...|...+-
T Consensus 518 q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENyml 595 (777)
T KOG1128|consen 518 QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYML 595 (777)
T ss_pred chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhh
Confidence 666677777777777777777777777766421 144667777777777777777777777777665 334455666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 040136 599 GLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~~ 619 (681)
...+.|.+++|++.+.++...
T Consensus 596 vsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 596 VSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhhhcccHHHHHHHHHHHHHh
Confidence 666777777777777766654
No 111
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.68 E-value=0.00086 Score=70.30 Aligned_cols=516 Identities=11% Similarity=-0.001 Sum_probs=265.4
Q ss_pred HcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcH
Q 040136 125 GANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVA 204 (681)
Q Consensus 125 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A 204 (681)
...+++..|.+-..++.+..+. ...+...=.-.+.+.|+.++|..+++... ..+ ..|..+..++-.+|...|+.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~-~~~-~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPN-ALYAKVLKALSLFRLGKGDEALKLLEALY-GLK-GTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhc-cCC-CCchHHHHHHHHHHHHHhhhhHH
Confidence 4568899999999998887642 22222222334568999999998888876 333 33778888999999999999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC----------hhHH
Q 040136 205 PNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNR----------VSEA 274 (681)
Q Consensus 205 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~A 274 (681)
..+|++.... -|+......+..+|.+.+++.+-.++--++.+. ++-+...+-+++..+...-. ..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 9999999876 467777788888999999887766665555553 34556666666666654221 2235
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcC
Q 040136 275 LMLLEEMILMG-CTSDVQTFNDVIHGLCKVNRIHEAAKLVDR-MLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIP 352 (681)
Q Consensus 275 ~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 352 (681)
.+.++.+.+.+ -.-+..-...-...+...|.+++|.+++.. ..+.-..-+...-+.-+..+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 56666666543 111222233334556678889999998843 3333222233334455677778888887777666554
Q ss_pred CCChHHHHHHHHHHH----------------hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---hcCChhHHHH
Q 040136 353 SANVVLLNTVINGYV----------------ISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLC---KQRRFGSALE 413 (681)
Q Consensus 353 ~~~~~~~~~l~~~~~----------------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~---~~~~~~~A~~ 413 (681)
..+..-|...++.+. ..+..+...+ ..+...... ....|-+-+.... ..|+.+++..
T Consensus 254 ~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~e-k~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~ 329 (932)
T KOG2053|consen 254 EKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIE-KAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLS 329 (932)
T ss_pred HhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHH-HHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHH
Confidence 411111332222211 1122222222 111111110 0111222222222 2344444433
Q ss_pred HHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 040136 414 LVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIH 493 (681)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 493 (681)
.|-+ .-|..| .|..=+..|...=..+.-..++........... .+.+.+. -+...+.
T Consensus 330 ~y~~--kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s------~~~k~l~------------~h~c~l~ 386 (932)
T KOG2053|consen 330 YYFK--KFGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSS------GDEKVLQ------------QHLCVLL 386 (932)
T ss_pred HHHH--HhCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccCCcch------hhHHHHH------------HHHHHHH
Confidence 3221 112111 111111112111122222222222222111000 0000000 0111111
Q ss_pred HHHhcCC-----HHHHHHHHHHHH---hCC------CCCCH---------HHHHHHHHHHHHcCCHH---HHHHHHHHHH
Q 040136 494 AFLRRGS-----LHEAHKLVNDML---FRG------CPLDE---------ITYNGLIKALCNAGAVD---KGLGLFEEMM 547 (681)
Q Consensus 494 ~~~~~g~-----~~~A~~~~~~~~---~~~------~~~~~---------~~~~~l~~~~~~~g~~~---~A~~~~~~~~ 547 (681)
.-.-.|. -+....++.+.. ++| .-|+. .+.+.|++.+-+.++.. +|+.+++.-.
T Consensus 387 ~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~gl 466 (932)
T KOG2053|consen 387 LLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGL 466 (932)
T ss_pred HHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 1111111 112222221111 111 11221 24556778888888755 5555666655
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 040136 548 RKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVT 627 (681)
Q Consensus 548 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 627 (681)
... .-|..+--.+++.|+-.|-...|.++++.+--+.+.-|..-|- +...+...|++..+...++....- ..-+..-
T Consensus 467 t~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkf-y~~~~kE 543 (932)
T KOG2053|consen 467 TKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKF-YDSSLKE 543 (932)
T ss_pred hcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHH-Hhhhhhh
Confidence 542 2255566678999999999999999999887665665654442 344566788998888888877663 1111111
Q ss_pred HHHHHHHHHhcCChhH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcc
Q 040136 628 YNTLISWHFKEGLFDD---AFLILHKGVANGFVPNDATWYILVRNLVKEINM 676 (681)
Q Consensus 628 ~~~l~~~~~~~g~~~~---A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~ 676 (681)
-.-+|..-++.|.+.. ....-+++..+-......+-+..++.++..++.
T Consensus 544 ~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~ 595 (932)
T KOG2053|consen 544 TPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRG 595 (932)
T ss_pred hHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 1223333345555543 333444444322222334445555555555443
No 112
>PLN02789 farnesyltranstransferase
Probab=98.66 E-value=4.6e-05 Score=73.77 Aligned_cols=224 Identities=10% Similarity=0.023 Sum_probs=144.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHh
Q 040136 400 HGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEG-QLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLL 478 (681)
Q Consensus 400 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 478 (681)
..+...+..++|+.+..++++.. +-+..+|+....++...| ++++++..++++.+.+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-------------------- 103 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-------------------- 103 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC--------------------
Confidence 33445567778888887777652 223345555545555555 45666666666655432
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 040136 479 EGVTANTVTYNTLIHAFLRRGSL--HEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSI 556 (681)
Q Consensus 479 ~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 556 (681)
.+..+|+.....+.+.|+. ++++.+++++++.. +-|..+|+....++.+.|++++++..++++++.+.. +..
T Consensus 104 ----knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~s 177 (320)
T PLN02789 104 ----KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNS 177 (320)
T ss_pred ----cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chh
Confidence 2555566555555555553 66788888887764 567888888888888888888888888888887654 566
Q ss_pred HHHHHHHHHHhc---CC----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCH
Q 040136 557 SCNILINGLCRT---RK----ANTALEFLRDMIHRGLTPDIVTYNSLINGLCKM----GCIQEALNLFDKLQAEGIYPDA 625 (681)
Q Consensus 557 ~~~~l~~~~~~~---g~----~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~ 625 (681)
.|+.....+.+. |. .++++++..+++... +-|...|+.+...+... ++..+|...+.+..+.+ ..+.
T Consensus 178 AW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~ 255 (320)
T PLN02789 178 AWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHV 255 (320)
T ss_pred HHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcH
Confidence 676666555544 22 246777777777642 33567787777777663 34566888888877642 3356
Q ss_pred HHHHHHHHHHHhcC------------------ChhHHHHHHHHHH
Q 040136 626 VTYNTLISWHFKEG------------------LFDDAFLILHKGV 652 (681)
Q Consensus 626 ~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~ 652 (681)
.....|++.|+... ..++|.+++..+.
T Consensus 256 ~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 256 FALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 67777888887532 2366778887774
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.65 E-value=1.2e-05 Score=87.21 Aligned_cols=225 Identities=12% Similarity=0.075 Sum_probs=149.2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040136 426 NIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAH 505 (681)
Q Consensus 426 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 505 (681)
....|-..+....+.++.++|++++++++..= .+ .+- .--...|.++++.-..-|.-+...
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tI-N~------REe------------eEKLNiWiA~lNlEn~yG~eesl~ 1517 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTI-NF------REE------------EEKLNIWIAYLNLENAYGTEESLK 1517 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhC-Cc------chh------------HHHHHHHHHHHhHHHhhCcHHHHH
Confidence 45567777777777888888888887776541 00 000 001235666666666667777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040136 506 KLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRG 585 (681)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 585 (681)
++|+++.+. ......|..|...|.+.+.+++|.++++.|.++ .......|...+..+.++.+-+.|..++++.++.
T Consensus 1518 kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~- 1593 (1710)
T KOG1070|consen 1518 KVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS- 1593 (1710)
T ss_pred HHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-
Confidence 888877765 223456777778888888888888888888776 2346677777888888888888888888887764
Q ss_pred CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--
Q 040136 586 LTPD---IVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPND-- 660 (681)
Q Consensus 586 ~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~-- 660 (681)
-|. .......++.-.+.|+.+.+..+|+..+.. .+--...|+.+++.-.++|+.+.++.+|++++..++.|-.
T Consensus 1594 -lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmK 1671 (1710)
T KOG1070|consen 1594 -LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMK 1671 (1710)
T ss_pred -cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhH
Confidence 333 233444455556778888888888887775 2334667888888888888888888888888877766543
Q ss_pred HHHHHHHHHHHhcCc
Q 040136 661 ATWYILVRNLVKEIN 675 (681)
Q Consensus 661 ~~~~~ll~~~~~~g~ 675 (681)
.-|...+..=...|+
T Consensus 1672 fffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1672 FFFKKWLEYEKSHGD 1686 (1710)
T ss_pred HHHHHHHHHHHhcCc
Confidence 334444443333343
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.65 E-value=8.5e-06 Score=73.26 Aligned_cols=99 Identities=14% Similarity=0.158 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHCCCCCCHHHHHH
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKAL-CNAGA--VDKGLGLFEEMMRKGIKPSSISCNI 560 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~ 560 (681)
|...|..+...|...|++++|...|++..+.. |.+...+..+..++ ...|+ .++|..+++++++.+.. +...+..
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~ 149 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALML 149 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHH
Confidence 55555566666666666666666666655553 44555555555542 44444 35666666666554332 4455555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 561 LINGLCRTRKANTALEFLRDMIHR 584 (681)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~~~~ 584 (681)
+...+...|++++|+..|+++++.
T Consensus 150 LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 150 LASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 555555666666666666665554
No 115
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.64 E-value=2.3e-05 Score=85.20 Aligned_cols=227 Identities=9% Similarity=0.043 Sum_probs=142.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCc---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccH
Q 040136 391 DVFTFNILIHGLCKQRRFGSALELVNAMAVK-GCEP---NIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRI 466 (681)
Q Consensus 391 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 466 (681)
+...|-..|......++.++|.++.++.+.. ++.- -.-.|.++++.-...|.-+...++|+++.+..
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--------- 1527 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--------- 1527 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc---------
Confidence 4456666666677777777777777766543 1111 12356666666666666666777777766542
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040136 467 EEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEM 546 (681)
Q Consensus 467 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 546 (681)
-.-..|..|...|.+.+..++|.++++.|.+. +......|...+..+.+..+-+.|..++.++
T Consensus 1528 ----------------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rA 1590 (1710)
T KOG1070|consen 1528 ----------------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRA 1590 (1710)
T ss_pred ----------------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 12345666777777777777777777777766 3345667777777777777777777777777
Q ss_pred HHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-
Q 040136 547 MRKGIK-PSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD- 624 (681)
Q Consensus 547 ~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~- 624 (681)
++.=.+ -......-.+..-.+.|+.+.+..+|+..+.. .+--...|+.+++.-.++|+.+.++.+|+++...++.|-
T Consensus 1591 L~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1591 LKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred HhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 764111 12233344455556677777777777777664 233456677777777777777777777777777766654
Q ss_pred -HHHHHHHHHHHHhcCChhHH
Q 040136 625 -AVTYNTLISWHFKEGLFDDA 644 (681)
Q Consensus 625 -~~~~~~l~~~~~~~g~~~~A 644 (681)
...|...+..--+.|+-..+
T Consensus 1670 mKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1670 MKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hHHHHHHHHHHHHhcCchhhH
Confidence 23455555555555554433
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.62 E-value=7.1e-06 Score=77.15 Aligned_cols=168 Identities=18% Similarity=0.118 Sum_probs=128.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHH
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDE---ITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSS--ISC 558 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~ 558 (681)
....+..+...+...|++++|...++++.... |.+. .++..+..++...|++++|...++++.+....... ..+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 56677788888999999999999999988763 3333 46677888999999999999999999986432121 245
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCH-HHH-----------------HHHHHHHHhcCCHHHHHHH
Q 040136 559 NILINGLCRT--------RKANTALEFLRDMIHRGLTPDI-VTY-----------------NSLINGLCKMGCIQEALNL 612 (681)
Q Consensus 559 ~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~-~~~-----------------~~l~~~~~~~g~~~~A~~~ 612 (681)
..+..++... |+.++|.+.++++... .|+. ..+ ..+...+.+.|++++|+..
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 188 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINR 188 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 5566666654 7889999999999875 3332 221 1345667888999999999
Q ss_pred HHHHHHCCC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040136 613 FDKLQAEGI-YP-DAVTYNTLISWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 613 ~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
++++.+..- .| ....+..++.++.+.|++++|..+++.+...
T Consensus 189 ~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 189 FETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999998510 12 2568889999999999999999999988764
No 117
>PLN02789 farnesyltranstransferase
Probab=98.55 E-value=5.7e-05 Score=73.13 Aligned_cols=203 Identities=7% Similarity=0.006 Sum_probs=96.8
Q ss_pred CCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCc--CcH
Q 040136 128 KEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGG-VPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCH--KVA 204 (681)
Q Consensus 128 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~A 204 (681)
+..++|..+..++++..+ -+..+|.....++...| .+++++..++++.+ .. +.+..+|+....++.+.|.. +++
T Consensus 51 e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~-~n-pknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 51 ERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAE-DN-PKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH-HC-CcchHHhHHHHHHHHHcCchhhHHH
Confidence 445555555555555443 23344444444444444 34556666555552 11 33334444443333344432 445
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---CCh----hHHHHH
Q 040136 205 PNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKS---NRV----SEALML 277 (681)
Q Consensus 205 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~----~~A~~~ 277 (681)
+.+++++++.+.+ +..+|+....++.+.|+++++++.++++++.+ +.|..+|+....++.+. |+. ++.++.
T Consensus 128 l~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 5555565555422 45555555555555566666666666666554 33445555444443332 111 234444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 040136 278 LEEMILMGCTSDVQTFNDVIHGLCKV----NRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCR 337 (681)
Q Consensus 278 ~~~m~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (681)
..+++... +-|...|+-+...+... +...+|...+.+....+ +.+......|++.|+.
T Consensus 206 ~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 206 TIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 44444432 34455555555555442 23344555555544432 1234445555555553
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=2e-05 Score=80.21 Aligned_cols=212 Identities=13% Similarity=0.075 Sum_probs=119.0
Q ss_pred HHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 040136 188 YNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSK 267 (681)
Q Consensus 188 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 267 (681)
-..+...+...|....|..+|+++.. +..++.+|+..|+.++|..+..+-.++ +|+...|..+.++...
T Consensus 401 q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 34445555666666666666655432 344555666666666666666665553 3566666666555555
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 040136 268 SNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARAL 347 (681)
Q Consensus 268 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 347 (681)
..-+++|.++.+....+ +-..+.......++++++.+.++.-.+.. +.-..+|..+.-++.+.+++..|.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 55555565555543321 11111111223566666666666555432 22344555555566666666666666
Q ss_pred HhhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040136 348 LNKIPS---ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAV 420 (681)
Q Consensus 348 ~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 420 (681)
|..... .+...||.+..+|.+.++-.+|.. .+.+..+.+ .-+-..|...+....+.|.+++|.+.+.++..
T Consensus 542 F~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~-~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 542 FHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFR-KLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHH-HHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 665544 334567777777777777777777 445555444 22444555566666777777777777777654
No 119
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.55 E-value=4.1e-05 Score=82.57 Aligned_cols=169 Identities=11% Similarity=0.085 Sum_probs=90.7
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHH
Q 040136 113 TFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVL 192 (681)
Q Consensus 113 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll 192 (681)
....+..++..+...+++++|.++.+...+..+ -....|..+...+.+.++.+++..+ . ++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P-~~i~~yy~~G~l~~q~~~~~~~~lv--~----------------~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHK-KSISALYISGILSLSRRPLNDSNLL--N----------------LI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-cceehHHHHHHHHHhhcchhhhhhh--h----------------hh
Confidence 445566666666666666666666665555543 2334444444455555554444333 1 11
Q ss_pred HHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 040136 193 DVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVS 272 (681)
Q Consensus 193 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 272 (681)
+......++..+..+...|... .-+...+..+..+|-+.|+.++|..+++++.+.+ +.|+.+.|.+...|... +++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 2222222332222233333332 1233456666666666666666666666666665 55666666666666666 666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 273 EALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVR 319 (681)
Q Consensus 273 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 319 (681)
+|.+++.+.... +...+++..+.+++.++...
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 666666655532 44455666666666666654
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.55 E-value=2.1e-05 Score=70.70 Aligned_cols=164 Identities=15% Similarity=0.117 Sum_probs=122.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 040136 492 IHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKA 571 (681)
Q Consensus 492 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 571 (681)
+..|...|+++.+..-.+.+... .. .+...++.+++...++..++.+. .+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~---~~---------~~~~~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP---LH---------QFASQQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc---cc---------cccCchhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCH
Confidence 45688999988875544332211 10 12235677888888888888753 4788999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 040136 572 NTALEFLRDMIHRGLTPDIVTYNSLINGL-CKMGC--IQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLIL 648 (681)
Q Consensus 572 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 648 (681)
++|...+++..... +.+...+..+..++ ...|+ .++|.++++++.+.+ +-+..++..+...+...|++++|...|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999863 33677788888764 67777 599999999999963 335778889999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 649 HKGVANGFVPNDATWYILVRNLVK 672 (681)
Q Consensus 649 ~~~~~~g~~~~~~~~~~ll~~~~~ 672 (681)
+++++. .+|+.... .+|.+...
T Consensus 168 ~~aL~l-~~~~~~r~-~~i~~i~~ 189 (198)
T PRK10370 168 QKVLDL-NSPRVNRT-QLVESINM 189 (198)
T ss_pred HHHHhh-CCCCccHH-HHHHHHHH
Confidence 999985 35555443 34455433
No 121
>PF12854 PPR_1: PPR repeat
Probab=98.51 E-value=1.4e-07 Score=56.51 Aligned_cols=28 Identities=43% Similarity=0.694 Sum_probs=10.5
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHH
Q 040136 252 VPNSVVYQTLIHALSKSNRVSEALMLLE 279 (681)
Q Consensus 252 ~~~~~~~~~li~~~~~~~~~~~A~~~~~ 279 (681)
.||..+|+++|++|++.|++++|.++|+
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3333333333333333333333333333
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.51 E-value=3.4e-05 Score=69.03 Aligned_cols=160 Identities=15% Similarity=0.073 Sum_probs=109.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040136 431 TILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVND 510 (681)
Q Consensus 431 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 510 (681)
..+-..+...|+-+.+..+........ +.+.......+....+.|++..|...+++
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~------------------------~~d~~ll~~~gk~~~~~g~~~~A~~~~rk 125 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY------------------------PKDRELLAAQGKNQIRNGNFGEAVSVLRK 125 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC------------------------cccHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 444555666666666655555443321 23555566677777788888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 040136 511 MLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDI 590 (681)
Q Consensus 511 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 590 (681)
..... |+|..+|+.+.-+|.+.|++++|..-|.+..+.... +...++.+.-.+.-.|+.+.|..++......+. -|.
T Consensus 126 A~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~ 202 (257)
T COG5010 126 AARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADS 202 (257)
T ss_pred HhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-Cch
Confidence 77663 778888888888888888888888888888776322 556667777777778888888888877776532 255
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 591 VTYNSLINGLCKMGCIQEALNLFDKLQ 617 (681)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 617 (681)
.+-..+.-+....|++++|.++...-.
T Consensus 203 ~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 203 RVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHHHHhhcCChHHHHhhccccc
Confidence 556666667777888888877765544
No 123
>PF12854 PPR_1: PPR repeat
Probab=98.50 E-value=1.7e-07 Score=56.14 Aligned_cols=28 Identities=61% Similarity=1.166 Sum_probs=10.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040136 587 TPDIVTYNSLINGLCKMGCIQEALNLFD 614 (681)
Q Consensus 587 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 614 (681)
.||..+|++||.+|++.|++++|.++|+
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3333333333333333333333333333
No 124
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.49 E-value=1e-05 Score=68.63 Aligned_cols=94 Identities=6% Similarity=-0.153 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 558 CNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFK 637 (681)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 637 (681)
+..+...+...|++++|...|+...... +.+...|..+..++...|++++|+..|+++.+.+ +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3344555566666666666666666542 2245556666666666666666666666666532 2345556666666666
Q ss_pred cCChhHHHHHHHHHHH
Q 040136 638 EGLFDDAFLILHKGVA 653 (681)
Q Consensus 638 ~g~~~~A~~~~~~~~~ 653 (681)
.|++++|...++++++
T Consensus 105 ~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 105 MGEPGLAREAFQTAIK 120 (144)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666665
No 125
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.48 E-value=0.0016 Score=62.87 Aligned_cols=146 Identities=12% Similarity=0.185 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHH
Q 040136 520 EITYNGLIKALCNAGAVDKGLGLFEEMMRKG-IKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVT-YNSLI 597 (681)
Q Consensus 520 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~ 597 (681)
..+|...++.-.+...++.|..+|-++.+.+ ..+++..+++++..++ +|+...|.++|+--+.. -||... .+..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4567777887777777888999999988887 5677888888887664 67888888888876654 344433 35566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 598 NGLCKMGCIQEALNLFDKLQAEGIYPD--AVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLV 671 (681)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~ 671 (681)
..+...++-+.|..+|+..++. +..+ ..+|..+++.-..-|+...+..+=+++.+ ..|...+.....+.+.
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 7777888889999999977664 3334 56888888888888999888888888877 4565555544444443
No 126
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.47 E-value=0.0019 Score=63.85 Aligned_cols=98 Identities=9% Similarity=0.072 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHH
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPS--SISCNIL 561 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l 561 (681)
++.++++++..||. ++.+-|.++|+--++. .+.++.--...++-+...++-..|..+|++.+..++.|+ ...|..+
T Consensus 401 hVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~ 478 (656)
T KOG1914|consen 401 HVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRM 478 (656)
T ss_pred hhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHH
Confidence 45555666665443 5566666666655444 233444444555566666666666666666666544333 3556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 040136 562 INGLCRTRKANTALEFLRDMIH 583 (681)
Q Consensus 562 ~~~~~~~g~~~~A~~~~~~~~~ 583 (681)
+..-..-|+...++++-+++..
T Consensus 479 l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 479 LEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHhcccHHHHHHHHHHHHH
Confidence 6666666666666666666554
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=0.00027 Score=69.05 Aligned_cols=148 Identities=16% Similarity=0.172 Sum_probs=119.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 040136 494 AFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPS-SISCNILINGLCRTRKAN 572 (681)
Q Consensus 494 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 572 (681)
.+...|+.++|+..++.++.. .|.|+..+......+.+.++.++|.+.++.++.. .|+ ....-.+..+|.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 356778999999999998876 4667777788888999999999999999999986 344 566677888999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 573 TALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGV 652 (681)
Q Consensus 573 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (681)
+|+.++++.... .+-|+..|..|.++|...|+..+|..... ..|...|++++|...+..+.
T Consensus 392 eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 392 EAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHH
Confidence 999999998876 45688899999999999999888765443 34667799999999998888
Q ss_pred HCCCCCCHHHHH
Q 040136 653 ANGFVPNDATWY 664 (681)
Q Consensus 653 ~~g~~~~~~~~~ 664 (681)
+. ..++..+|.
T Consensus 453 ~~-~~~~~~~~a 463 (484)
T COG4783 453 QQ-VKLGFPDWA 463 (484)
T ss_pred Hh-ccCCcHHHH
Confidence 75 355555553
No 128
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=0.00032 Score=62.38 Aligned_cols=167 Identities=15% Similarity=0.169 Sum_probs=131.1
Q ss_pred CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 040136 482 TANTV-TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNI 560 (681)
Q Consensus 482 ~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 560 (681)
.++.. .|..++-+....|+.+.|..+++.+... +|-+..+-..-...+-..|.+++|+++++.+++.+ +.|.+++--
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KR 125 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKR 125 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHH
Confidence 34543 3455666677889999999999998877 35455544444445667899999999999999986 346777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 040136 561 LINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYP-DAVTYNTLISWHFKEG 639 (681)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 639 (681)
=+.....+|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++++-. .| +...+..+.+.++-.|
T Consensus 126 KlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 126 KLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQG 202 (289)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHh
Confidence 777778889988999999998886 7779999999999999999999999999999974 55 4555667888776655
Q ss_pred ---ChhHHHHHHHHHHH
Q 040136 640 ---LFDDAFLILHKGVA 653 (681)
Q Consensus 640 ---~~~~A~~~~~~~~~ 653 (681)
+..-|+++|.+.++
T Consensus 203 g~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 203 GAENLELARKYYERALK 219 (289)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45678999999998
No 129
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.44 E-value=0.002 Score=62.41 Aligned_cols=217 Identities=18% Similarity=0.168 Sum_probs=121.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040136 427 IVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHK 506 (681)
Q Consensus 427 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 506 (681)
+.++..++....+.++...|...+.-+.-.++.....++.--..+.+.++... |...++.+ ..=+.
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~----DD~~~Tkl----------r~yL~ 363 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCE----DDESYTKL----------RDYLN 363 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhc----chHHHHHH----------HHHHH
Confidence 34567777777777888887777777666554444444443334444444432 22222221 12233
Q ss_pred HHHHHHhCCCCCCHHHHHHHH---HHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHh---cCCHHHHH
Q 040136 507 LVNDMLFRGCPLDEITYNGLI---KALCNAGA-VDKGLGLFEEMMRKGIKPSSISCNILIN----GLCR---TRKANTAL 575 (681)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~----~~~~---~g~~~~A~ 575 (681)
+++......+.- ......|+ .-+-+.|. -++|+.+++.+++-. .-|...-|.+.. .|.. .....+-+
T Consensus 364 lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLl 441 (549)
T PF07079_consen 364 LWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLL 441 (549)
T ss_pred HHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 344433332111 11111121 12334444 677888888777641 224333333221 2211 12334444
Q ss_pred HHHHHHHHCCCCCCH----HHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 040136 576 EFLRDMIHRGLTPDI----VTYNSLING--LCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILH 649 (681)
Q Consensus 576 ~~~~~~~~~~~~p~~----~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 649 (681)
++-+-+.+.|++|-. ..-|.|.++ +...|++.++.-.-.-+.+ +.|++.+|..++-++....++++|..++.
T Consensus 442 kLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 442 KLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444445556777643 334444443 4578999999887777776 78999999999999999999999999887
Q ss_pred HHHHCCCCCCHHHHHHH
Q 040136 650 KGVANGFVPNDATWYIL 666 (681)
Q Consensus 650 ~~~~~g~~~~~~~~~~l 666 (681)
.+ +|+..+++.-
T Consensus 520 ~L-----P~n~~~~dsk 531 (549)
T PF07079_consen 520 KL-----PPNERMRDSK 531 (549)
T ss_pred hC-----CCchhhHHHH
Confidence 65 5666666543
No 130
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.43 E-value=6.3e-05 Score=67.31 Aligned_cols=165 Identities=16% Similarity=0.092 Sum_probs=137.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILIN 563 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 563 (681)
|... ..+-..+...|+-+....+....... .+.|.......+....+.|++.+|+..++++.... ++|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 3444 56667788889999888888886654 36677788889999999999999999999999864 568899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 040136 564 GLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDD 643 (681)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 643 (681)
+|.+.|+.+.|..-|.+..+. ..-+...++.+.-.+.-.|+.+.|..++......+ .-|..+-..+.-.....|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHH
Confidence 999999999999999999985 22355678888888999999999999999999863 3367777888888999999999
Q ss_pred HHHHHHHHHH
Q 040136 644 AFLILHKGVA 653 (681)
Q Consensus 644 A~~~~~~~~~ 653 (681)
|..+...-+.
T Consensus 221 A~~i~~~e~~ 230 (257)
T COG5010 221 AEDIAVQELL 230 (257)
T ss_pred HHhhcccccc
Confidence 9998766553
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.43 E-value=0.00013 Score=78.83 Aligned_cols=232 Identities=11% Similarity=0.091 Sum_probs=142.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHH
Q 040136 391 DVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPN-IVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEA 469 (681)
Q Consensus 391 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a 469 (681)
+...+..|+..+...+++++|.++.+...+. .|+ ...|-.+...+.+.++++++..+ .+... .....++...
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~---~~~~~~~~~v 102 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS---FSQNLKWAIV 102 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh---cccccchhHH
Confidence 3455666666666667777777766655544 232 33333333355566666655554 22211 1122233333
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 040136 470 LGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK 549 (681)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (681)
..++..+... .-+...+..+..+|-+.|+.++|..+|+++++.. +.|+.+.|-+...|... ++++|.+++.+++..
T Consensus 103 e~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 103 EHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 3333344432 2255688889999999999999999999999986 77999999999999999 999999999998875
Q ss_pred CCCCCHHHHHHHHH---HH--HhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040136 550 GIKPSSISCNILIN---GL--CRTRKANTALEFLRDMIHR-GLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYP 623 (681)
Q Consensus 550 ~~~p~~~~~~~l~~---~~--~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 623 (681)
-+ +..-|+.+.. -+ ....+++.-.++.+.+... |..--..++-.+...|...++|++++.+++.+.+.. +-
T Consensus 179 ~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~ 255 (906)
T PRK14720 179 FI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NK 255 (906)
T ss_pred HH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-Cc
Confidence 11 1111111111 11 1122334444444444433 222234455566677888889999999999999863 33
Q ss_pred CHHHHHHHHHHHH
Q 040136 624 DAVTYNTLISWHF 636 (681)
Q Consensus 624 ~~~~~~~l~~~~~ 636 (681)
|.....-++.+|.
T Consensus 256 n~~a~~~l~~~y~ 268 (906)
T PRK14720 256 NNKAREELIRFYK 268 (906)
T ss_pred chhhHHHHHHHHH
Confidence 5667777777776
No 132
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.43 E-value=3.9e-05 Score=72.08 Aligned_cols=187 Identities=9% Similarity=0.009 Sum_probs=91.0
Q ss_pred CCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCH-HhH
Q 040136 112 HTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIIC--RESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTF-RSY 188 (681)
Q Consensus 112 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~ 188 (681)
.....+...+..+...|+++.|...++++.+..+.. ...++..+..+|.+.|++++|...|+++.+...-.+.. ..+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 345556666666667777777777777766654321 12355566666777777777777777666322211111 123
Q ss_pred HHHHHHHHhc--------CCcCcHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHH
Q 040136 189 NVVLDVLVAG--------NCHKVAPNLFYDMLSKGISPTV-YTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQ 259 (681)
Q Consensus 189 ~~ll~~~~~~--------~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 259 (681)
..+..++.+. |++++|.+.|+++.+.. |+. .....+... .. ... .. .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~-~~---~~~------~~--------~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM-DY---LRN------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH-HH---HHH------HH--------HHHHH
Confidence 3333333332 44555555555555442 221 111111100 00 000 00 00011
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 260 TLIHALSKSNRVSEALMLLEEMILMG--CTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLV 318 (681)
Q Consensus 260 ~li~~~~~~~~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 318 (681)
.+...+.+.|++++|...+++..+.. .+.....+..+..++.+.|++++|..+++.+..
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445556666666666666665431 111234555566666666666666666555543
No 133
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.0006 Score=61.18 Aligned_cols=121 Identities=17% Similarity=0.188 Sum_probs=62.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 493 HAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCN----AGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRT 568 (681)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 568 (681)
..+.+..+.+-|.+.+++|.+.. +..+.+.|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+....++...
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~ 220 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHh
Confidence 33455556666666666665532 44455555555443 23456666666666554 345666666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 040136 569 RKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCI-QEALNLFDKLQA 618 (681)
Q Consensus 569 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 618 (681)
|++++|..++++.+.+. .-++.+...++-+-...|.. +...+.+.++..
T Consensus 221 ~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 221 GRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred cCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 66666666666666542 22344443333333333332 333344444444
No 134
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.41 E-value=9.9e-05 Score=79.02 Aligned_cols=147 Identities=10% Similarity=0.054 Sum_probs=122.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040136 482 TANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNIL 561 (681)
Q Consensus 482 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 561 (681)
+.++..+..|.....+.|..++|..+++...+. .|.+......+...+.+.+++++|+...++....... +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~-~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR-FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 346888889999999999999999999999987 3667778888899999999999999999999987543 66778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 562 INGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLI 632 (681)
Q Consensus 562 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 632 (681)
..++.+.|++++|..+|+++... .+-+..++..+..++.+.|+.++|...|++..+. ..|....|+.++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 89999999999999999999984 2334788889999999999999999999999886 344455554433
No 135
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.36 E-value=0.0001 Score=78.89 Aligned_cols=134 Identities=9% Similarity=0.031 Sum_probs=101.4
Q ss_pred CCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHH
Q 040136 182 QPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPT-VYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQT 260 (681)
Q Consensus 182 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 260 (681)
+.+...+-.|..+..+.|.+++|..+++...+. .|+ ......+...+.+.+++++|...+++..... +.+......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 456777777778888888888888888888776 344 4566677777888888888888888888775 455666777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 261 LIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVR 319 (681)
Q Consensus 261 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 319 (681)
+..++.+.|++++|..+|+++...+ +.+..++..+...+-..|+.++|...|++..+.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777888888888888888888743 344677777888888888888888888887764
No 136
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.36 E-value=5.2e-05 Score=64.34 Aligned_cols=92 Identities=10% Similarity=-0.043 Sum_probs=44.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040136 490 TLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTR 569 (681)
Q Consensus 490 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 569 (681)
.+..++...|++++|...|+...... |.+...+..+..++...|++++|...|+++.+... .+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcC
Confidence 34444445555555555555544442 33444445555555555555555555555554321 13444444444455555
Q ss_pred CHHHHHHHHHHHHH
Q 040136 570 KANTALEFLRDMIH 583 (681)
Q Consensus 570 ~~~~A~~~~~~~~~ 583 (681)
+.++|+..|++.++
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555444
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.33 E-value=2.8e-05 Score=65.74 Aligned_cols=103 Identities=13% Similarity=0.079 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 556 ISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWH 635 (681)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 635 (681)
.....++..+...|++++|.+.++++...+ +.+...|..+..++...|++++|...+++..+.+ +.+...+..+..++
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 344455555666666666666666665532 2245555566666666666666666666665542 33445555566666
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHH
Q 040136 636 FKEGLFDDAFLILHKGVANGFVPNDAT 662 (681)
Q Consensus 636 ~~~g~~~~A~~~~~~~~~~g~~~~~~~ 662 (681)
...|++++|...+++.++ ..|+...
T Consensus 96 ~~~g~~~~A~~~~~~al~--~~p~~~~ 120 (135)
T TIGR02552 96 LALGEPESALKALDLAIE--ICGENPE 120 (135)
T ss_pred HHcCCHHHHHHHHHHHHH--hccccch
Confidence 666666666666666665 3344444
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.26 E-value=5.7e-05 Score=63.81 Aligned_cols=98 Identities=17% Similarity=0.057 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 519 DEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLIN 598 (681)
Q Consensus 519 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 598 (681)
+......+...+...|++++|...|+.+...+. .+...+..+...+...|++++|...+++..+.+ +.+...+..+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 334455555566666666666666666665432 245556666666666666666666666665542 334455555666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 040136 599 GLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~ 618 (681)
++...|++++|...|+...+
T Consensus 94 ~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666777777776666666
No 139
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.19 E-value=0.00084 Score=65.75 Aligned_cols=136 Identities=20% Similarity=0.270 Sum_probs=94.1
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 040136 231 CMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSD-VQTFNDVIHGLCKVNRIHEA 309 (681)
Q Consensus 231 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a 309 (681)
...|++++|+..++.+.+.- |.|+..+......+.+.++..+|.+.++++... .|+ ....-.+..++.+.|++.+|
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 35677778888877776653 555666666777777888888888888877765 344 44555566777778888888
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 040136 310 AKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLS 385 (681)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (681)
+.+++..... .+-|...|..|..+|...|+..++..-..+ .|...|++++|+. +.....+
T Consensus 394 i~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE--------------~~~~~G~~~~A~~-~l~~A~~ 453 (484)
T COG4783 394 IRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE--------------GYALAGRLEQAII-FLMRASQ 453 (484)
T ss_pred HHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH--------------HHHhCCCHHHHHH-HHHHHHH
Confidence 8777777655 344677777788888877777777665443 6777777777777 4444443
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.10 E-value=0.00013 Score=62.19 Aligned_cols=117 Identities=18% Similarity=0.187 Sum_probs=55.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHH
Q 040136 533 AGAVDKGLGLFEEMMRKGIKP--SSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDI--VTYNSLINGLCKMGCIQE 608 (681)
Q Consensus 533 ~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~ 608 (681)
.++.+.+...++.+.+....- .....-.+...+...|++++|...|+........|+. ...-.|..++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555555555542111 0122233444555556666666666555554311111 122334455555666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 040136 609 ALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKG 651 (681)
Q Consensus 609 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 651 (681)
|+..++..... ......+....++|.+.|++++|...|++.
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66665443221 122334445555666666666666665543
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.09 E-value=0.00023 Score=60.68 Aligned_cols=127 Identities=17% Similarity=0.174 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHH
Q 040136 486 VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLD---EITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSS--ISCNI 560 (681)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~ 560 (681)
..|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+.+......|+. .....
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 3455555555 4888999999999988873 434 234444667888999999999999999997633332 34455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040136 561 LINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKL 616 (681)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 616 (681)
+...+...|++++|+..++..... ......+.....++.+.|++++|+..|++.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 788899999999999999775432 334556778889999999999999999875
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.06 E-value=0.00018 Score=71.12 Aligned_cols=122 Identities=18% Similarity=0.206 Sum_probs=60.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 489 NTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRT 568 (681)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 568 (681)
.+++..+...++++.|.++++++.+.. |+ ....++..+...++-.+|.+++++.++.. +.+...+..-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344444444555555555555555442 22 22234444445555555555555555432 22344444444455555
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 569 RKANTALEFLRDMIHRGLTPD-IVTYNSLINGLCKMGCIQEALNLFDKLQ 617 (681)
Q Consensus 569 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 617 (681)
++++.|+++.+++.+. .|+ ..+|..|..+|.+.|+++.|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 5555555555555542 332 3455555555555555555555555443
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.00 E-value=0.00028 Score=69.76 Aligned_cols=125 Identities=19% Similarity=0.196 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 521 ITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGL 600 (681)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 600 (681)
.....|+..+...++++.|+.+|+++.+.. |+. ...++..+...++-.+|++++++.++. .+-+...+......|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 334445555556667777777777777653 333 334666666667777777777777754 233555666666667
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 601 CKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGLFDDAFLILHKGV 652 (681)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (681)
.+.++++.|+.+.+++.+. .|+ ..+|..|+.+|...|++++|+..++.+-
T Consensus 245 l~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7777777777777777773 554 4477777777777777777777766654
No 144
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=0.0042 Score=55.50 Aligned_cols=163 Identities=13% Similarity=0.108 Sum_probs=97.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 040136 152 FILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALC 231 (681)
Q Consensus 152 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 231 (681)
+..++-+....|+.+.|...++++..++.-++-+.- .-.-.+-..|++++|.++++.+++.+ +.|..++-.-+-..-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~--lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGK--LKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHH--HHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 334455555667777777777776644321222221 11222345677777777777777765 234555555555555
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHH
Q 040136 232 MVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVN---RIHE 308 (681)
Q Consensus 232 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~---~~~~ 308 (681)
..|+.-+|++-+....+. +..|..+|.-+...|...|++++|.-.++++.-.. |.+...+..+...+.-.| +.+.
T Consensus 132 a~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 666666777777766664 46677777777777777777777777777777542 334444444444443333 4566
Q ss_pred HHHHHHHHHHC
Q 040136 309 AAKLVDRMLVR 319 (681)
Q Consensus 309 a~~~~~~~~~~ 319 (681)
+.+++.+.++.
T Consensus 210 arkyy~~alkl 220 (289)
T KOG3060|consen 210 ARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHh
Confidence 77777777765
No 145
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.93 E-value=0.035 Score=56.92 Aligned_cols=205 Identities=16% Similarity=0.144 Sum_probs=113.0
Q ss_pred CCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHC-CCCCC--------hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 040136 182 QPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSK-GISPT--------VYTFGVVMKALCMVNEVDSACSLLRDMTKHGCV 252 (681)
Q Consensus 182 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-~~~p~--------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 252 (681)
.|.+..|..+...-...-.++.|...|-+...- |++.- ...-..=+. .--|++++|.+++-++.+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhh--
Confidence 677788887776666666666666666443321 22100 000001111 12377788888877776654
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 040136 253 PNSVVYQTLIHALSKSNRVSEALMLLEEMILM-GCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVL 331 (681)
Q Consensus 253 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 331 (681)
..|..+.+.|++-...++++.--.. .-..-..+|+.+..-+.....|++|.+++..-.. ....
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence 2455666777776666655431100 0011134667777777777777777777765321 1234
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 040136 332 MHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSA 411 (681)
Q Consensus 332 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A 411 (681)
+.++.+..++++-+.+...+++ +....-.+.+++...|..++|.+.+++. +.+ .+.+..|...+++.+|
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~----s~p------kaAv~tCv~LnQW~~a 897 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRR----SLP------KAAVHTCVELNQWGEA 897 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhc----cCc------HHHHHHHHHHHHHHHH
Confidence 5566666666665555555444 3345556677777777777777733221 111 2345566677777777
Q ss_pred HHHHHH
Q 040136 412 LELVNA 417 (681)
Q Consensus 412 ~~~~~~ 417 (681)
.++-+.
T Consensus 898 velaq~ 903 (1189)
T KOG2041|consen 898 VELAQR 903 (1189)
T ss_pred HHHHHh
Confidence 766544
No 146
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.86 E-value=0.0003 Score=69.87 Aligned_cols=123 Identities=13% Similarity=0.205 Sum_probs=71.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 040136 516 CPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK--GIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTY 593 (681)
Q Consensus 516 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 593 (681)
.+.+......+++.+....+++.+..++.+.... ....-..|..++++.|.+.|..++++++++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3455555666666665555666666666665543 11111233346666666666666666666666666666666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 594 NSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKE 638 (681)
Q Consensus 594 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 638 (681)
|.|++.+.+.|++..|.++.-.|...+...+..|+...+.+|++.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666666666666554444555555544444444
No 147
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.85 E-value=2.8e-05 Score=47.39 Aligned_cols=32 Identities=50% Similarity=0.718 Sum_probs=14.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 040136 258 YQTLIHALSKSNRVSEALMLLEEMILMGCTSD 289 (681)
Q Consensus 258 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~ 289 (681)
||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 44444444444444444444444444444443
No 148
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.84 E-value=2.9e-05 Score=47.30 Aligned_cols=32 Identities=56% Similarity=1.067 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040136 593 YNSLINGLCKMGCIQEALNLFDKLQAEGIYPD 624 (681)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 624 (681)
|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 44444444444444444444444444444443
No 149
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.012 Score=56.42 Aligned_cols=52 Identities=17% Similarity=0.035 Sum_probs=25.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 040136 228 KALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEE 280 (681)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 280 (681)
..+.+..++..|+..+...++.. +.+...|..-...+...|++++|.--.+.
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~ 108 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQ 108 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhh
Confidence 34444555555555555555543 33344444444445555555555444333
No 150
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.81 E-value=0.011 Score=50.11 Aligned_cols=133 Identities=15% Similarity=0.110 Sum_probs=104.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHH
Q 040136 517 PLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRG---LTPDIVTY 593 (681)
Q Consensus 517 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~ 593 (681)
.|+......|..+....|+..+|...|++...--..-|....-.+.++....+++..|...++++.+.+ -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 566666677888889999999999999998875445577788888888889999999999999988752 2333 33
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 594 NSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 594 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
-.+...+...|..+.|+..|+.+.. ..|+...-......+.+.|+.++|..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4567788889999999999999988 477877767777888889988888776666554
No 151
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.80 E-value=0.0016 Score=67.66 Aligned_cols=143 Identities=15% Similarity=0.065 Sum_probs=86.6
Q ss_pred CCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc--------CCHHHHHHHHHHH
Q 040136 516 CPLDEITYNGLIKALCNA-----GAVDKGLGLFEEMMRKGIKPS-SISCNILINGLCRT--------RKANTALEFLRDM 581 (681)
Q Consensus 516 ~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~ 581 (681)
.+.+...|...+.+.... ++.+.|..+|+++++. .|+ ...+..+..++... ++...+.+...+.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 355666666666654332 1255677777777764 333 23333333322221 1223444444443
Q ss_pred HHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 040136 582 IHR-GLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPND 660 (681)
Q Consensus 582 ~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 660 (681)
... ....+...|..+.-.....|++++|...++++++. .|+...|..+.+.+...|+.++|.+.++++.. +.|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 332 12334566766666666678888888888888884 56777888888888888888888888888886 56666
Q ss_pred HHHH
Q 040136 661 ATWY 664 (681)
Q Consensus 661 ~~~~ 664 (681)
.+|.
T Consensus 487 pt~~ 490 (517)
T PRK10153 487 NTLY 490 (517)
T ss_pred chHH
Confidence 6553
No 152
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.025 Score=54.46 Aligned_cols=68 Identities=16% Similarity=0.065 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 040136 481 VTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK 549 (681)
Q Consensus 481 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (681)
..++...|.....+..+.|+.++|+.--++..... +.-...+..-..++...+++++|.+-|+...+.
T Consensus 283 ~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 283 KKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667777777777888888888888887776542 111122223334555677888888888887775
No 153
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.79 E-value=0.0007 Score=64.82 Aligned_cols=129 Identities=12% Similarity=0.099 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 487 TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCN-AGAVDKGLGLFEEMMRKGIKPSSISCNILINGL 565 (681)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 565 (681)
+|..++....+.+..+.|..+|.++.+.+ ..+..+|......-.+ .++.+.|..+|+..++. ...+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555555555555555332 2233333333333222 34444455555555554 223445555555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 566 CRTRKANTALEFLRDMIHRGLTPDI---VTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 566 ~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
...++.+.|..+|++.... +.++. ..|..+++.-.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555543 22211 3555555555555555555555555555
No 154
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.78 E-value=0.00044 Score=63.37 Aligned_cols=99 Identities=13% Similarity=0.181 Sum_probs=62.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 040136 527 IKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPD-IVTYNSLINGLCKMGC 605 (681)
Q Consensus 527 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 605 (681)
.+-..+.+++.+|+..|.++++.... |.+-|..-..+|.+.|.++.|++-.+..+.. .|. ..+|..|..+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCc
Confidence 33445566777777777777765322 5556666666777777777777766666653 333 3566667777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHH
Q 040136 606 IQEALNLFDKLQAEGIYPDAVTYNT 630 (681)
Q Consensus 606 ~~~A~~~~~~~~~~~~~p~~~~~~~ 630 (681)
+++|++.|++.++ +.|+..+|-.
T Consensus 165 ~~~A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 165 YEEAIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHHHHhhhc--cCCCcHHHHH
Confidence 7777777777766 5666655544
No 155
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.77 E-value=4.8e-05 Score=45.95 Aligned_cols=31 Identities=32% Similarity=0.478 Sum_probs=14.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 040136 257 VYQTLIHALSKSNRVSEALMLLEEMILMGCT 287 (681)
Q Consensus 257 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 287 (681)
+|+.++.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444443
No 156
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.77 E-value=0.066 Score=55.04 Aligned_cols=212 Identities=13% Similarity=0.071 Sum_probs=104.2
Q ss_pred CCCHHHHHHHHHHHHcCCCchHHHHHHHHHHH-cCCCCCHHHHHH------HHHHHHhCCChHHHHHHHHHcHhhcCCCC
Q 040136 111 CHTFDVYYVLIDKLGANKEFKVIDSVLLQMKE-EGIICRESLFIL------IMKYYGRGGVPGQATRLLLDMKSVYGCQP 183 (681)
Q Consensus 111 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 183 (681)
.|.+..|..++......-+++.|+..|-+... .|+..-...... -...-+--|++++|.++|-++- ..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~d-----rr 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDAD-----RR 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccc-----hh
Confidence 36677777777776666677777777665543 222111111000 0111122366666666666655 12
Q ss_pred CHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 040136 184 TFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGI--SPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTL 261 (681)
Q Consensus 184 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 261 (681)
| ..|..+.+.|++-.+.++++.--. +. .--...++.+...+.....+++|.+.+..-.. ....
T Consensus 764 D-----LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~ 828 (1189)
T KOG2041|consen 764 D-----LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ 828 (1189)
T ss_pred h-----hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence 2 223444445554444443321000 00 00123455555566665666666665554221 1234
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCH
Q 040136 262 IHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRV 341 (681)
Q Consensus 262 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 341 (681)
+.++.+..++++-..+.+.+ +.|....-.+...+...|.-++|.+.+-+. +.+ ...+..|...+++
T Consensus 829 ~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~p------kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SLP------KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cCc------HHHHHHHHHHHHH
Confidence 55555555555444443333 334455556666777777777776655432 111 2345556666677
Q ss_pred HHHHHHHhhcCCCCh
Q 040136 342 DEARALLNKIPSANV 356 (681)
Q Consensus 342 ~~A~~~~~~~~~~~~ 356 (681)
.+|.++-++..-|.+
T Consensus 895 ~~avelaq~~~l~qv 909 (1189)
T KOG2041|consen 895 GEAVELAQRFQLPQV 909 (1189)
T ss_pred HHHHHHHHhccchhH
Confidence 777776665544443
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.75 E-value=0.00057 Score=53.21 Aligned_cols=93 Identities=22% Similarity=0.242 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 559 NILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKE 638 (681)
Q Consensus 559 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 638 (681)
..++..+...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.++...+.. +.+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 344445555566666666666555431 1223445555555556666666666666655532 22334555555666666
Q ss_pred CChhHHHHHHHHHHH
Q 040136 639 GLFDDAFLILHKGVA 653 (681)
Q Consensus 639 g~~~~A~~~~~~~~~ 653 (681)
|++++|...+.+..+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 666666666666554
No 158
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.73 E-value=6.8e-05 Score=45.26 Aligned_cols=31 Identities=39% Similarity=0.684 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040136 592 TYNSLINGLCKMGCIQEALNLFDKLQAEGIY 622 (681)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 622 (681)
+|+.++.+|.+.|+++.|.++|+.|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444333
No 159
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.73 E-value=0.00061 Score=67.70 Aligned_cols=125 Identities=16% Similarity=0.216 Sum_probs=102.9
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 040136 479 EGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFR--GCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSI 556 (681)
Q Consensus 479 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 556 (681)
.+.+.+......+++.+....+.+.+..++-+.... ....-+.|..++++.|.+.|..++++.+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 445567788888888888888899999988888765 222334456789999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 557 SCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKM 603 (681)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 603 (681)
+++.|++.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999988877777777776666666665
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.72 E-value=0.00098 Score=66.33 Aligned_cols=100 Identities=10% Similarity=-0.010 Sum_probs=72.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040136 526 LIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGC 605 (681)
Q Consensus 526 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 605 (681)
-...+...|++++|+..|+++++.... +...|..+..+|...|++++|+..++++++.. +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 345566778888888888888876433 56777777888888888888888888887752 2356677777788888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHH
Q 040136 606 IQEALNLFDKLQAEGIYPDAVTYN 629 (681)
Q Consensus 606 ~~~A~~~~~~~~~~~~~p~~~~~~ 629 (681)
+++|+..|+++++. .|+.....
T Consensus 86 ~~eA~~~~~~al~l--~P~~~~~~ 107 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDSRFT 107 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHH
Confidence 88888888888873 55544333
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.70 E-value=8e-05 Score=56.53 Aligned_cols=80 Identities=19% Similarity=0.289 Sum_probs=43.3
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHH
Q 040136 568 TRKANTALEFLRDMIHRGL-TPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGLFDDAF 645 (681)
Q Consensus 568 ~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 645 (681)
.|+++.|+.+++++.+... .++...+-.+..++.+.|++++|+.++++ .+ ..+. ......++.+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4566666666666666422 11333444466666666666666666666 22 1222 233334456666667777766
Q ss_pred HHHHH
Q 040136 646 LILHK 650 (681)
Q Consensus 646 ~~~~~ 650 (681)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
No 162
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.69 E-value=0.062 Score=52.53 Aligned_cols=141 Identities=11% Similarity=0.104 Sum_probs=85.1
Q ss_pred HhcCCCChHHHHHHHHHhhhCCC---CCCCHHHH-HHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHH--HH
Q 040136 87 LLRLPLDVDTSMEIFTWAGSQEG---YCHTFDVY-YVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKY--YG 160 (681)
Q Consensus 87 ~l~~~~~~~~al~~~~~~~~~~~---~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 160 (681)
+|+.+++..+|-++|.......- +....+++ ..+++++. ..+.+.....+....+.... ..|..|..+ .-
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~---s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGK---SAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCC---chHHHHHHHHHHH
Confidence 45668899999999988755422 22222333 34445554 45667777777776664422 223333222 23
Q ss_pred hCCChHHHHHHHHHcHhhc-CCC------------CCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCC----CCCChhhH
Q 040136 161 RGGVPGQATRLLLDMKSVY-GCQ------------PTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKG----ISPTVYTF 223 (681)
Q Consensus 161 ~~g~~~~A~~~~~~~~~~~-~~~------------~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~----~~p~~~~~ 223 (681)
+.|.+++|.+.+..-.... +.+ +|...=+..+..+...|++.++..++++|...= ...+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 7788899988887665221 111 122223455678889999999999888887653 33677888
Q ss_pred HHHHHHHH
Q 040136 224 GVVMKALC 231 (681)
Q Consensus 224 ~~ll~~~~ 231 (681)
+.++-.+.
T Consensus 171 d~~vlmls 178 (549)
T PF07079_consen 171 DRAVLMLS 178 (549)
T ss_pred HHHHHHHh
Confidence 87655544
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.68 E-value=0.0026 Score=56.14 Aligned_cols=87 Identities=16% Similarity=0.111 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 521 ITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPS--SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLIN 598 (681)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 598 (681)
..+..+...+...|++++|...|+++++....+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3455555556666666666666666665432221 2455556666666666666666666666531 113444445555
Q ss_pred HHHhcCCHHH
Q 040136 599 GLCKMGCIQE 608 (681)
Q Consensus 599 ~~~~~g~~~~ 608 (681)
++...|+...
T Consensus 115 ~~~~~g~~~~ 124 (172)
T PRK02603 115 IYHKRGEKAE 124 (172)
T ss_pred HHHHcCChHh
Confidence 5555555433
No 164
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.67 E-value=0.002 Score=52.81 Aligned_cols=24 Identities=17% Similarity=-0.071 Sum_probs=9.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 040136 630 TLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
.+..++.+.|++++|.+.++++++
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHH
Confidence 333334444444444444444443
No 165
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.67 E-value=0.0013 Score=53.99 Aligned_cols=99 Identities=13% Similarity=0.068 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 040136 521 ITYNGLIKALCNAGAVDKGLGLFEEMMRKGIK--PSSISCNILINGLCRTRKANTALEFLRDMIHRGLT--PDIVTYNSL 596 (681)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l 596 (681)
.++..++..+.+.|++++|...|..+.+.... .....+..+..++.+.|++++|.+.++++...... .....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45667788889999999999999999886322 12456777899999999999999999999875211 124567788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 040136 597 INGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 597 ~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
..++.+.|+.++|...++++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 88999999999999999999986
No 166
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.65 E-value=0.006 Score=58.75 Aligned_cols=66 Identities=14% Similarity=0.085 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc-----CHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040136 394 TFNILIHGLCKQRRFGSALELVNAMAVKGCEP-----NIV-TYTILVDGFCKEGQLEKANIIINEMLAKGLS 459 (681)
Q Consensus 394 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 459 (681)
.+..+...+.+.|++++|.++|+++....... +.. .+-..+-++...|++..|...+++.....+.
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45667778889999999999999887643221 221 2233344566788999999888888766433
No 167
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.64 E-value=0.013 Score=54.66 Aligned_cols=160 Identities=14% Similarity=0.110 Sum_probs=103.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 490 TLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITY---NGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLC 566 (681)
Q Consensus 490 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 566 (681)
.....+...|++++|.+.|+.+.... |-+.... -.++.++.+.+++++|...+++.++..+.-...-+...+.+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 34445677899999999999988863 4344433 3456778899999999999999988743322233333333322
Q ss_pred h--c---------------CC---HHHHHHHHHHHHHCCCCCCHHH-----------H-------HHHHHHHHhcCCHHH
Q 040136 567 R--T---------------RK---ANTALEFLRDMIHRGLTPDIVT-----------Y-------NSLINGLCKMGCIQE 608 (681)
Q Consensus 567 ~--~---------------g~---~~~A~~~~~~~~~~~~~p~~~~-----------~-------~~l~~~~~~~g~~~~ 608 (681)
. . .+ ..+|++.|+++++. -|+..- - -.+..-|.+.|.+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~A 193 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVA 193 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence 1 1 12 34566777777764 333211 0 123455778888888
Q ss_pred HHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 609 ALNLFDKLQAE--GIYPDAVTYNTLISWHFKEGLFDDAFLILHKGV 652 (681)
Q Consensus 609 A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (681)
|+.-++.+++. +.+........++.+|.+.|..++|.++...+.
T Consensus 194 A~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 194 VVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 88888888886 222234566677888888888888888776654
No 168
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.63 E-value=0.0012 Score=63.13 Aligned_cols=144 Identities=10% Similarity=0.169 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 521 ITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCR-TRKANTALEFLRDMIHRGLTPDIVTYNSLING 599 (681)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 599 (681)
.+|..++....+.+..+.|+.+|.++.+.+ ..+...|-..+..-.. .++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467888888888888999999999998653 2244555555555333 56677799999998886 56677888899999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 600 LCKMGCIQEALNLFDKLQAEGIYPDA---VTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRN 669 (681)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 669 (681)
+...|+.+.|..+|++.+.. +.++. ..|...++.-.+.|+++.+.++.+++.+ ..|+......+++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~r 149 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSDR 149 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHCC
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHHH
Confidence 99999999999999999875 33333 4899999999999999999999999987 45555444444443
No 169
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.032 Score=50.24 Aligned_cols=129 Identities=10% Similarity=0.090 Sum_probs=67.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHH
Q 040136 489 NTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKG-----IKPSSISCNILIN 563 (681)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~~l~~ 563 (681)
+.++..+.-.|.+.-...++++.++...+.++.....|+..-.+.|+.+.|...|++..+.. +.-+.........
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 34445555556666666666666665445556666666666666666666666666554431 1112222222233
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 564 GLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
.|.-++++..|...+.++...+ .-|+...|.-.-++.-.|+..+|++.++.|.+
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444556666666666665542 22333333333333444666666666666665
No 170
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0065 Score=56.33 Aligned_cols=117 Identities=13% Similarity=0.097 Sum_probs=68.2
Q ss_pred cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHH
Q 040136 465 RIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAG---AVDKGLG 541 (681)
Q Consensus 465 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~ 541 (681)
..+....-++.-.+.++. |...|..|..+|...|+...|..-|....+. .++++..+..+..++.... ...++..
T Consensus 137 ~~~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 137 EMEALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred cHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 344444444444444332 6666666666677777777776666666665 2556666666665544322 2355666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 542 LFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHR 584 (681)
Q Consensus 542 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 584 (681)
+|++++..+.. |+.+...|...+...|++.+|...|+.|++.
T Consensus 215 ll~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 215 LLRQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 66666665422 5555566666666666666666666666664
No 171
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.61 E-value=0.0014 Score=50.98 Aligned_cols=92 Identities=20% Similarity=0.216 Sum_probs=49.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040136 525 GLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMG 604 (681)
Q Consensus 525 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 604 (681)
.+...+...|++++|...++++.+... .+...+..+...+...|++++|.+.+++..... +.+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 344445555666666666665555421 123445555555555666666666666655532 223345555555666666
Q ss_pred CHHHHHHHHHHHHH
Q 040136 605 CIQEALNLFDKLQA 618 (681)
Q Consensus 605 ~~~~A~~~~~~~~~ 618 (681)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 66666666665554
No 172
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.60 E-value=0.0011 Score=60.74 Aligned_cols=130 Identities=18% Similarity=0.201 Sum_probs=97.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 040136 492 IHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKA 571 (681)
Q Consensus 492 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 571 (681)
.+-+.+.+++++|+..|.+.++.. |-|++.|.-=..+|++.|.++.|++-.+..+..+.. -..+|..|..+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcH
Confidence 556778899999999999999983 678888888899999999999999999988885321 347899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHH---HHHHHHHHHHHCCCCCCH
Q 040136 572 NTALEFLRDMIHRGLTPDIVTYNSLINGL-CKMGCIQ---EALNLFDKLQAEGIYPDA 625 (681)
Q Consensus 572 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~---~A~~~~~~~~~~~~~p~~ 625 (681)
++|++.|++.++ +.|+-.+|..=+... .+.+... .+..-++-....|..|+.
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS 221 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence 999999999998 678777765444332 2333333 344444444444544554
No 173
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.58 E-value=0.0057 Score=51.20 Aligned_cols=93 Identities=8% Similarity=-0.141 Sum_probs=52.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040136 525 GLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMG 604 (681)
Q Consensus 525 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 604 (681)
.+...+...|++++|..+|+.+....+. +..-|..|..++...|++++|+..|......+ +-|+..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 3444455566666666666666554322 34444555555666666666666666665543 224455555566666666
Q ss_pred CHHHHHHHHHHHHHC
Q 040136 605 CIQEALNLFDKLQAE 619 (681)
Q Consensus 605 ~~~~A~~~~~~~~~~ 619 (681)
+.+.|++.|+..+..
T Consensus 118 ~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 118 NVCYAIKALKAVVRI 132 (157)
T ss_pred CHHHHHHHHHHHHHH
Confidence 666666666655553
No 174
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.58 E-value=0.0021 Score=64.00 Aligned_cols=102 Identities=11% Similarity=0.013 Sum_probs=81.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040136 491 LIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRK 570 (681)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 570 (681)
-...+...|++++|++.|+++++.. +.+...|..+..+|.+.|++++|+..++++++... .+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCC
Confidence 3456677899999999999998874 66788888888899999999999999999988643 266778888889999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040136 571 ANTALEFLRDMIHRGLTPDIVTYNSL 596 (681)
Q Consensus 571 ~~~A~~~~~~~~~~~~~p~~~~~~~l 596 (681)
+++|+..|++.++. .|+......+
T Consensus 86 ~~eA~~~~~~al~l--~P~~~~~~~~ 109 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 99999999998874 4554443333
No 175
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.55 E-value=0.0021 Score=61.34 Aligned_cols=133 Identities=15% Similarity=0.061 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCH
Q 040136 521 ITYNGLIKALCNAGAVDKGLGLFEEMMR----KGIK-PSSISCNILINGLCRTRKANTALEFLRDMIHR----GL-TPDI 590 (681)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~ 590 (681)
..|..|.+.|.-.|+++.|+...+.-+. -|-+ .....+..+.+++.-.|+++.|.+.|+..... |- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3566667777778888888877654332 1211 12356777888888889999998888875432 11 1233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 591 VTYNSLINGLCKMGCIQEALNLFDKLQAE-----GIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
.+.-+|...|.-..++++|+.++.+-... ...-....+.+|..++...|..+.|+.+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45557778888788888888887764432 1122456778888888888888888877776655
No 176
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.55 E-value=0.0028 Score=53.03 Aligned_cols=98 Identities=8% Similarity=-0.133 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISW 634 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 634 (681)
....-.+...+...|++++|.++|+-+...+ +-+..-|-.|.-++...|++++|+..+..+.... +-|...+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3445566777889999999999999998753 2356778889999999999999999999999964 3457788999999
Q ss_pred HHhcCChhHHHHHHHHHHHC
Q 040136 635 HFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~~~ 654 (681)
+...|+.+.|++.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999874
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.54 E-value=0.0032 Score=60.66 Aligned_cols=140 Identities=12% Similarity=0.095 Sum_probs=83.8
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCH
Q 040136 523 YNGLIKALCNA-GAVDKGLGLFEEMMRK----GIKPS--SISCNILINGLCRTRKANTALEFLRDMIHRGLT-----PDI 590 (681)
Q Consensus 523 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~ 590 (681)
+..+...|... |++++|++.|+++.+. + .+. ...+..++..+.+.|++++|.++|++....... .+.
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 33445556666 8899999999888764 2 111 345667788899999999999999998874222 122
Q ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHh--cCChhHHHHHHHHHHHCCCCCCHHHH
Q 040136 591 V-TYNSLINGLCKMGCIQEALNLFDKLQAE--GIYPD--AVTYNTLISWHFK--EGLFDDAFLILHKGVANGFVPNDATW 663 (681)
Q Consensus 591 ~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~g~~~~~~~~ 663 (681)
. .+-..+-++...||...|.+.+++.... ++..+ ......|+.++-. ...+++|..-|+.+. +.|..-.
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~----~ld~w~~ 271 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS----RLDNWKT 271 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-------HHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC----ccHHHHH
Confidence 1 2222333666789999999999998864 22222 3455667777644 245666666666664 3455444
Q ss_pred HHHH
Q 040136 664 YILV 667 (681)
Q Consensus 664 ~~ll 667 (681)
..|+
T Consensus 272 ~~l~ 275 (282)
T PF14938_consen 272 KMLL 275 (282)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 178
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.54 E-value=0.0016 Score=62.12 Aligned_cols=286 Identities=16% Similarity=0.108 Sum_probs=156.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHH--H--CCCC-CCcccHHHHHH
Q 040136 263 HALSKSNRVSEALMLLEEMILMGCTSDVQT----FNDVIHGLCKVNRIHEAAKLVDRML--V--RGFT-PDDITYGVLMH 333 (681)
Q Consensus 263 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~----~~~li~~~~~~~~~~~a~~~~~~~~--~--~~~~-~~~~~~~~l~~ 333 (681)
.-+|+.|+....+.+|+..++.| .-|..| |..|..+|.-.+++++|+++...=+ . .|-+ -.......|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 34788899999999999988877 334433 5555666777778888887764211 1 1111 12233344555
Q ss_pred HHHhcCCHHHHHHHHhhcCC---------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 040136 334 GLCRTGRVDEARALLNKIPS---------ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCK 404 (681)
Q Consensus 334 ~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 404 (681)
.+--.|.+++|.....+-.. .....+-.+...|...|+.-.... -.+.|-.++..+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~-----pee~g~f~~ev~---------- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA-----PEEKGAFNAEVT---------- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC-----hhhcccccHHHH----------
Confidence 55566677776654433222 111223333333433333211100 000011111110
Q ss_pred cCChhHHHHHHHHHHh----cCCC-cCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhc
Q 040136 405 QRRFGSALELVNAMAV----KGCE-PNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLE 479 (681)
Q Consensus 405 ~~~~~~A~~~~~~~~~----~~~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 479 (681)
..++.|.++|.+=++ .|-. .--..|..|.+.|.-.|+++.|+...+.=+. -|.+.=++.
T Consensus 169 -~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~------------ia~efGDrA--- 232 (639)
T KOG1130|consen 169 -SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLE------------IAQEFGDRA--- 232 (639)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHH------------HHHHhhhHH---
Confidence 012233333332111 1100 0113455666666667888888765543221 111111111
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----
Q 040136 480 GVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLF----RG-CPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK----- 549 (681)
Q Consensus 480 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 549 (681)
.....+..+.++++-.|+++.|.+.|+.... .| -........+|.+.|.-..++++|+.++.+-+..
T Consensus 233 ---aeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~ 309 (639)
T KOG1130|consen 233 ---AERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE 309 (639)
T ss_pred ---HHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1235677788888889999999988876532 22 1234556777888888888899999888765431
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 550 GIKPSSISCNILINGLCRTRKANTALEFLRDMIH 583 (681)
Q Consensus 550 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 583 (681)
...-...++.+|..+|...|..++|+.+.+.-++
T Consensus 310 DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 310 DRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1112456778889999999999999888877554
No 179
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.54 E-value=0.0017 Score=50.17 Aligned_cols=74 Identities=23% Similarity=0.360 Sum_probs=40.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 529 ALCNAGAVDKGLGLFEEMMRKGI-KPSSISCNILINGLCRTR--------KANTALEFLRDMIHRGLTPDIVTYNSLING 599 (681)
Q Consensus 529 ~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 599 (681)
.+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+++.|+..+++|+..+|+.++..
T Consensus 34 ~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~ 113 (120)
T PF08579_consen 34 SCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGS 113 (120)
T ss_pred HHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 33344555555555665555555 555566655555544432 233455566666666666666666666655
Q ss_pred HHh
Q 040136 600 LCK 602 (681)
Q Consensus 600 ~~~ 602 (681)
+.+
T Consensus 114 Llk 116 (120)
T PF08579_consen 114 LLK 116 (120)
T ss_pred HHH
Confidence 543
No 180
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.53 E-value=0.0012 Score=50.97 Aligned_cols=74 Identities=14% Similarity=0.347 Sum_probs=37.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcC--------ChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 228 KALCMVNEVDSACSLLRDMTKHGC-VPNSVVYQTLIHALSKSN--------RVSEALMLLEEMILMGCTSDVQTFNDVIH 298 (681)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~--------~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 298 (681)
..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++-..+.+++.|...+++|+..+|+.++.
T Consensus 33 ~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~ 112 (120)
T PF08579_consen 33 NSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLG 112 (120)
T ss_pred HHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 333444555555555555555555 455555555555444422 12334455555555555555555555555
Q ss_pred HHH
Q 040136 299 GLC 301 (681)
Q Consensus 299 ~~~ 301 (681)
.+.
T Consensus 113 ~Ll 115 (120)
T PF08579_consen 113 SLL 115 (120)
T ss_pred HHH
Confidence 443
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.53 E-value=0.0024 Score=56.08 Aligned_cols=63 Identities=21% Similarity=0.138 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 521 ITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKP--SSISCNILINGLCRTRKANTALEFLRDMIH 583 (681)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 583 (681)
..+..++..+...|++++|...|++++.....+ ...++..+...+...|++++|++.+++..+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444555555566666666666555432111 123455555555555666666665555554
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.52 E-value=0.0078 Score=62.69 Aligned_cols=144 Identities=15% Similarity=0.068 Sum_probs=105.0
Q ss_pred CCCCCHHHHHHHHHHHHhc--C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHH
Q 040136 480 GVTANTVTYNTLIHAFLRR--G---SLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAG--------AVDKGLGLFEEM 546 (681)
Q Consensus 480 ~~~~~~~~~~~li~~~~~~--g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~ 546 (681)
..+.+...|...+.+.... + +.+.|..+|++.++.. |-....+..+..++.... +...+.+...+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3456888888888775432 2 3778999999999884 556666766655553321 233444444444
Q ss_pred HHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 040136 547 MRK-GIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDA 625 (681)
Q Consensus 547 ~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 625 (681)
... ....+...|..+.-.....|++++|...++++++. .|+...|..+...+...|+.++|.+.++++.. +.|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 332 12335577887777777889999999999999995 57888999999999999999999999999998 46766
Q ss_pred HHH
Q 040136 626 VTY 628 (681)
Q Consensus 626 ~~~ 628 (681)
.+|
T Consensus 487 pt~ 489 (517)
T PRK10153 487 NTL 489 (517)
T ss_pred chH
Confidence 554
No 183
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.49 E-value=0.0028 Score=55.74 Aligned_cols=114 Identities=9% Similarity=-0.021 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 040136 536 VDKGLGLFEEMMRK-GIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTP--DIVTYNSLINGLCKMGCIQEALNL 612 (681)
Q Consensus 536 ~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~ 612 (681)
+..+...+..+.+. +..-....+..++..+...|++++|+..+++.......+ ...+|..+..++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34444555555322 222235667778888889999999999999998753222 235788899999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHH-------hcCChhHHHHHHHHH
Q 040136 613 FDKLQAEGIYPD-AVTYNTLISWHF-------KEGLFDDAFLILHKG 651 (681)
Q Consensus 613 ~~~~~~~~~~p~-~~~~~~l~~~~~-------~~g~~~~A~~~~~~~ 651 (681)
++++.+. .|+ ..++..+...+. ..|++++|...+++.
T Consensus 95 ~~~Al~~--~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 95 YFQALER--NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHh--CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 9999985 443 456666666666 778877555555543
No 184
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.48 E-value=0.00021 Score=54.22 Aligned_cols=81 Identities=20% Similarity=0.271 Sum_probs=44.3
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040136 533 AGAVDKGLGLFEEMMRKGIK-PSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALN 611 (681)
Q Consensus 533 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 611 (681)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|.+++++ .+.+. .+....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35666777777776665321 1333444466667777777777777766 22111 122333344666667777777777
Q ss_pred HHHH
Q 040136 612 LFDK 615 (681)
Q Consensus 612 ~~~~ 615 (681)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.44 E-value=0.024 Score=48.16 Aligned_cols=102 Identities=13% Similarity=-0.035 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHH
Q 040136 112 HTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVV 191 (681)
Q Consensus 112 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 191 (681)
|+..--..+...+...|+..+|...|++...--...+..+...+.++....+++..|...++++-+...--.++...-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 34444444555555555555555555555443333344444455555555555555555555544111001111222333
Q ss_pred HHHHHhcCCcCcHHHHHHHHHH
Q 040136 192 LDVLVAGNCHKVAPNLFYDMLS 213 (681)
Q Consensus 192 l~~~~~~~~~~~A~~~~~~m~~ 213 (681)
.+.|...|.+.+|..-|+..+.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH
Confidence 4444444444444444444444
No 186
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.44 E-value=0.00019 Score=42.19 Aligned_cols=27 Identities=33% Similarity=0.469 Sum_probs=12.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040136 258 YQTLIHALSKSNRVSEALMLLEEMILM 284 (681)
Q Consensus 258 ~~~li~~~~~~~~~~~A~~~~~~m~~~ 284 (681)
|+.++++|++.|++++|.++|++|.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 444444444444444444444444443
No 187
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.43 E-value=0.0083 Score=52.92 Aligned_cols=115 Identities=15% Similarity=0.094 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTPD--IVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYP-DAVTYNTL 631 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 631 (681)
...+..+...+...|++++|...+++.++....+. ...+..+..++.+.|++++|+..++++.+. .| +...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 45677888889999999999999999987532222 467888899999999999999999999985 45 45566777
Q ss_pred HHHHHhcCC--------------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc
Q 040136 632 ISWHFKEGL--------------FDDAFLILHKGVANGFVPNDATWYILVRNLVKEIN 675 (681)
Q Consensus 632 ~~~~~~~g~--------------~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 675 (681)
..++...|+ +++|.++++++.+ ..|+. +..++.-+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~--~~p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR--LAPNN--YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh--hCchh--HHHHHHHHHhcCc
Confidence 778877776 4667777777765 34544 4455555555554
No 188
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.43 E-value=0.00019 Score=42.18 Aligned_cols=26 Identities=58% Similarity=1.090 Sum_probs=10.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 593 YNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 33334444444444444444433333
No 189
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.42 E-value=0.00069 Score=48.88 Aligned_cols=64 Identities=22% Similarity=0.289 Sum_probs=40.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 601 CKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILV 667 (681)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 667 (681)
.+.|++++|+++|+++.+.. +-+...+..++.+|.+.|++++|.++++++.. ..|+...+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHHHH
Confidence 35677777777777777642 22556666677777777777777777777776 346655554443
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.39 E-value=0.012 Score=47.40 Aligned_cols=89 Identities=21% Similarity=0.231 Sum_probs=41.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHH
Q 040136 562 INGLCRTRKANTALEFLRDMIHRGLTPD--IVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD----AVTYNTLISWH 635 (681)
Q Consensus 562 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~ 635 (681)
..++-..|+.++|+.+|++.+..|.... ...+-.+...+...|++++|..++++.... .|+ ......+..++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHH
Confidence 3444445555555555555555443332 123334444555555555555555555543 222 11112223344
Q ss_pred HhcCChhHHHHHHHHHH
Q 040136 636 FKEGLFDDAFLILHKGV 652 (681)
Q Consensus 636 ~~~g~~~~A~~~~~~~~ 652 (681)
...|+.++|.+.+-..+
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 55555555555554443
No 191
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.35 E-value=0.0031 Score=55.33 Aligned_cols=36 Identities=25% Similarity=0.376 Sum_probs=25.2
Q ss_pred hCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHh
Q 040136 161 RGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVA 197 (681)
Q Consensus 161 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 197 (681)
+.|..+-....+..|. ++|+..|..+|+.|++++=+
T Consensus 64 RRGHVeFI~aAL~~M~-efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 64 RRGHVEFIYAALKKMD-EFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred CcChHHHHHHHHHHHH-HcCCcccHHHHHHHHHhCCC
Confidence 4466666666677777 77778888888877776643
No 192
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.30 E-value=0.0011 Score=47.34 Aligned_cols=55 Identities=18% Similarity=0.369 Sum_probs=31.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 597 INGLCKMGCIQEALNLFDKLQAEGIYP-DAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 597 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
...+.+.|++++|+..|+++++. .| +...+..+..++...|++++|...++++++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455666666666666666654 23 344555566666666666666666666655
No 193
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.26 E-value=0.0013 Score=47.67 Aligned_cols=63 Identities=22% Similarity=0.246 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHHHH
Q 040136 589 DIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYP-DAVTYNTLISWHFKEG-LFDDAFLILHKGVA 653 (681)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 653 (681)
+..+|..+...+...|++++|+..|++.++. .| +...|..+..+|...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3455666666666666666666666666664 33 3445666666666666 56666666666654
No 194
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.25 E-value=0.006 Score=53.60 Aligned_cols=87 Identities=21% Similarity=0.238 Sum_probs=54.7
Q ss_pred ChhhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----------------cCChhHHHHH
Q 040136 219 TVYTFGVVMKALCM-----VNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSK----------------SNRVSEALML 277 (681)
Q Consensus 219 ~~~~~~~ll~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----------------~~~~~~A~~~ 277 (681)
|-.+|..++..|.+ .|.++-....+..|.+.|+..|..+|+.|++++=+ -.+.+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44555555555542 24455555555666666666666666666655433 1234567788
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040136 278 LEEMILMGCTSDVQTFNDVIHGLCKVNR 305 (681)
Q Consensus 278 ~~~m~~~~~~~~~~~~~~li~~~~~~~~ 305 (681)
+++|...|+-||..++..++..+++.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 8888888888888888888888766654
No 195
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.019 Score=53.39 Aligned_cols=98 Identities=14% Similarity=0.077 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 040136 554 SSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMG---CIQEALNLFDKLQAEGIYPDAVTYNT 630 (681)
Q Consensus 554 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~ 630 (681)
|...|..|...|...|+...|..-|.+..+. -.++...+..+..++..+. +..++.++|++++... +-|......
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 4555555555555555555555555555543 1223444444444443222 2345555555555531 223344444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 040136 631 LISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
|...+...|++.+|...|+.|++
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHh
Confidence 55555555666666666665555
No 196
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.23 E-value=0.15 Score=47.62 Aligned_cols=57 Identities=11% Similarity=0.035 Sum_probs=31.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHhc
Q 040136 363 INGYVISGRFDEAKAIFYDSMLSVGCIPDVFTF---NILIHGLCKQRRFGSALELVNAMAVK 421 (681)
Q Consensus 363 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~---~~ll~~~~~~~~~~~A~~~~~~~~~~ 421 (681)
...+...|++++|.+ .++.+......+ .... -.++.++.+.++++.|...+++..+.
T Consensus 39 A~~~~~~g~y~~Ai~-~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAIT-QLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHH-HHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 334455566666666 555555432221 1221 33455667777777777777777665
No 197
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.22 E-value=0.027 Score=45.45 Aligned_cols=90 Identities=20% Similarity=0.216 Sum_probs=48.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---H-HHHHHHHHHH
Q 040136 527 IKALCNAGAVDKGLGLFEEMMRKGIKPS--SISCNILINGLCRTRKANTALEFLRDMIHRGLTPD---I-VTYNSLINGL 600 (681)
Q Consensus 527 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~-~~~~~l~~~~ 600 (681)
..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|+.++++.... .|+ . .....+.-++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHH
Confidence 3445556666666666666666554433 234445556666666666666666666553 122 1 1111222345
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 040136 601 CKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~ 618 (681)
...|+.++|+..+-....
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 566666666666655443
No 198
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.026 Score=50.84 Aligned_cols=137 Identities=15% Similarity=0.057 Sum_probs=72.6
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHH
Q 040136 116 VYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVL 195 (681)
Q Consensus 116 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~ 195 (681)
+...+++.+.-.|.+.....++.++++.+++.++.....|++.-.+.|+.+.|...|+++.+..+ ..+....+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V--- 254 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMV--- 254 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHH---
Confidence 34455566666667777777777777666556666666666666666776666666665552211 11111111111
Q ss_pred HhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 040136 196 VAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEAL 275 (681)
Q Consensus 196 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 275 (681)
.......+.-.+++.+|...+.++...+ +.|+..-|.-.-+..-.|+..+|+
T Consensus 255 ---------------------------~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAi 306 (366)
T KOG2796|consen 255 ---------------------------LMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDAL 306 (366)
T ss_pred ---------------------------HhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHH
Confidence 1111122334455555555565555544 334444444444444456666666
Q ss_pred HHHHHHHHC
Q 040136 276 MLLEEMILM 284 (681)
Q Consensus 276 ~~~~~m~~~ 284 (681)
+.++.|.+.
T Consensus 307 K~~e~~~~~ 315 (366)
T KOG2796|consen 307 KQLEAMVQQ 315 (366)
T ss_pred HHHHHHhcc
Confidence 666666654
No 199
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.52 Score=49.45 Aligned_cols=111 Identities=13% Similarity=0.148 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 520 EITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLING 599 (681)
Q Consensus 520 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 599 (681)
..+.+--+.-+...|+-.+|.++-.+.. -||-..|-.-+.+++..+++++-+++-+... .+.-|.-+..+
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~ 753 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEA 753 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHH
Confidence 3344555566677888888887665553 4688888888889999999998777666543 24457778889
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 040136 600 LCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILH 649 (681)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 649 (681)
|.+.|+.++|.+++-+.-. .. -...+|.+.|++.+|.+..-
T Consensus 754 c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHH
Confidence 9999999999988876532 11 56778888898888876543
No 200
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.06 E-value=0.0029 Score=45.08 Aligned_cols=57 Identities=16% Similarity=0.227 Sum_probs=36.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 561 LINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
+...+...|++++|.+.|+++++.. +-+...+..+..++...|++++|...|+++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666677777777777776652 22455666666677777777777777777665
No 201
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.05 E-value=0.054 Score=49.18 Aligned_cols=63 Identities=19% Similarity=0.228 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 040136 488 YNTLIHAFLRRGSLHEAHKLVNDMLFRG--CPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKG 550 (681)
Q Consensus 488 ~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 550 (681)
+-.....+...|++++|.+.|+.+.... .+.-....-.++.++.+.|+++.|...+++.++.-
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3344555778899999999999998762 12234556677888999999999999999988863
No 202
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.03 E-value=0.0026 Score=45.86 Aligned_cols=57 Identities=23% Similarity=0.297 Sum_probs=31.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 040136 567 RTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAV 626 (681)
Q Consensus 567 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 626 (681)
..|++++|+++|+++.+.. +-+...+..+..+|.+.|++++|.++++++... .|+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~ 59 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNP 59 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHH
Confidence 4566666666666665541 224455555666666666666666666666653 44433
No 203
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.01 E-value=0.24 Score=48.55 Aligned_cols=169 Identities=16% Similarity=0.095 Sum_probs=111.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHH
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRG---CPLDEITYNGLIKALCN---AGAVDKGLGLFEEMMRKGIKPSSIS 557 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~ 557 (681)
+..+...++-+|....+++..+++++.+...- +.....+--...-++.+ .|+.++|++++..++...-.++..+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 33444566667999999999999999988751 12233333344556667 8999999999999777666788899
Q ss_pred HHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHH----HHHHHCC
Q 040136 558 CNILINGLCRT---------RKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCI----QEALNLF----DKLQAEG 620 (681)
Q Consensus 558 ~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----~~A~~~~----~~~~~~~ 620 (681)
|..+++.|... ...++|+..|.+.-+. .||...=-.++-.+...|.. .+..++- ..+.++|
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 98888877532 2477888888887764 35543222222223333322 1222222 2222333
Q ss_pred C---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040136 621 I---YPDAVTYNTLISWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 621 ~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
. ..+-..+.+++.++.-.|+.++|.+..++|.+.
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2 234456677889999999999999999999974
No 204
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.95 E-value=0.12 Score=46.80 Aligned_cols=170 Identities=17% Similarity=0.119 Sum_probs=86.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040136 434 VDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLF 513 (681)
Q Consensus 434 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 513 (681)
...+...|++.+|...|+.+....+.. +--......++.++.+.|+++.|...++.+++
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s---------------------~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNS---------------------PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTS---------------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCC---------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334555666777666666666542211 11223444566677777777777777777766
Q ss_pred CCCCCCHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040136 514 RGCPLDEITYNGLIKALCNA-------------GAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRD 580 (681)
Q Consensus 514 ~~~~~~~~~~~~l~~~~~~~-------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 580 (681)
.........+...+.+.+.. +...+|... +..++.-|-...-..+|.+.+..
T Consensus 71 ~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~ 135 (203)
T PF13525_consen 71 LYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAE 135 (203)
T ss_dssp H-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHH
T ss_pred HCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHH
Confidence 52111111222222222111 111223333 33444444445555555555554
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHH
Q 040136 581 MIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD----AVTYNTLISWHFKEGLFDDAF 645 (681)
Q Consensus 581 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~ 645 (681)
+.+. .-. .--.+...|.+.|.+..|..-++.+++. -|+ ......++.+|.+.|..+.|.
T Consensus 136 l~~~---la~-~e~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 136 LRNR---LAE-HELYIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHH---HHH-HHHHHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHH---HHH-HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 4431 011 1123566788888888888888888886 444 234566777888888877443
No 205
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.92 E-value=0.0041 Score=44.90 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMG-CIQEALNLFDKLQA 618 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 618 (681)
...|..+...+...|++++|+..|++.++.+ +-+...|..+..++...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455555566666666666666666665542 223455555555666666 46666666665554
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.91 E-value=0.029 Score=52.74 Aligned_cols=84 Identities=14% Similarity=0.124 Sum_probs=44.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHh
Q 040136 566 CRTRKANTALEFLRDMIHRGLTPDI----VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD----AVTYNTLISWHFK 637 (681)
Q Consensus 566 ~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~ 637 (681)
.+.|++++|...|+.+++. .|+. ..+-.+..+|...|++++|...|+.+++. .|+ ...+..++.++..
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~klg~~~~~ 229 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKVGVIMQD 229 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHHHHHHHH
Confidence 4445566666666665553 2221 34445555666666666666666666553 222 2333344445555
Q ss_pred cCChhHHHHHHHHHHH
Q 040136 638 EGLFDDAFLILHKGVA 653 (681)
Q Consensus 638 ~g~~~~A~~~~~~~~~ 653 (681)
.|++++|..+++++++
T Consensus 230 ~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 230 KGDTAKAKAVYQQVIK 245 (263)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666665
No 207
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.89 E-value=0.48 Score=46.08 Aligned_cols=105 Identities=14% Similarity=0.131 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 040136 328 YGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRR 407 (681)
Q Consensus 328 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 407 (681)
.+..+.-+...|+...|.++-.+..-++...|...+.+++..+++++..+ +... .-++.-|..++.+|.+.|.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~-fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEK-FAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHH-HHhC------CCCCCChHHHHHHHHHCCC
Confidence 33444445555666666666666655666666666666666666665555 3211 1123455566666666666
Q ss_pred hhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHH
Q 040136 408 FGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANII 449 (681)
Q Consensus 408 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 449 (681)
..+|..+...+ .+..-+..|.+.|++.+|.+.
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 66666555441 123445555566666555443
No 208
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.86 E-value=0.13 Score=52.46 Aligned_cols=280 Identities=16% Similarity=0.139 Sum_probs=133.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHH---------HHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCC
Q 040136 255 SVVYQTLIHALSKSNRVSEALMLL---------EEMILMGCTSDVQTFNDVIHGLCKVNRIH--EAAKLVDRMLVRGFTP 323 (681)
Q Consensus 255 ~~~~~~li~~~~~~~~~~~A~~~~---------~~m~~~~~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~~~~~~~~~ 323 (681)
...+.+-+..|...|.+++|.++- +.+... ..+...++..=.+|.+..+.. +.+.-++++.+.|-.|
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 334444455667777777776531 111111 112333444455666555433 3444456677777777
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 040136 324 DDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLC 403 (681)
Q Consensus 324 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~ 403 (681)
+... +...++-.|++.+|-++|.+ +|....|++ +|..|.- --...-+.
T Consensus 634 ~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlE-myTDlRM----------FD~aQE~~ 681 (1081)
T KOG1538|consen 634 NDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALE-MYTDLRM----------FDYAQEFL 681 (1081)
T ss_pred hHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHH-HHHHHHH----------HHHHHHHh
Confidence 7653 44566778888888887765 455555555 4333321 11222333
Q ss_pred hcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCC
Q 040136 404 KQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTA 483 (681)
Q Consensus 404 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 483 (681)
..|.-++-..+.++-.+. ..++.-=.+....+...|+.++|..+..+ .+-.+-+.++-+++.. .
T Consensus 682 ~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d----------~gW~d~lidI~rkld~----~ 745 (1081)
T KOG1538|consen 682 GSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGD----------HGWVDMLIDIARKLDK----A 745 (1081)
T ss_pred hcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhc----------ccHHHHHHHHHhhcch----h
Confidence 444444333333322211 00111112233344455666665544321 0112222222222211 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILIN 563 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 563 (681)
+..+...+...+.+...+.-|.++|..|-.. ..++......+++++|..+-+...+. .|+ .|.-...
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~d--Vy~pyaq 812 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDD--VYMPYAQ 812 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--ccc--ccchHHH
Confidence 3334444444444555566666666655322 24455555666666666655554432 222 2223333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 564 GLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
-++...++++|.+ +|.+.|+-.+|..+++++...
T Consensus 813 wLAE~DrFeEAqk----------------------AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 813 WLAENDRFEEAQK----------------------AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HhhhhhhHHHHHH----------------------HHHHhcchHHHHHHHHHhhhh
Confidence 3444444444443 555677778888888777654
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.86 E-value=0.0074 Score=44.17 Aligned_cols=63 Identities=16% Similarity=0.212 Sum_probs=38.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 040136 598 NGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATW 663 (681)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 663 (681)
..|.+.+++++|+++++.+++.+ +.+...+.....++.+.|++++|.+.+++.++ ..|+....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcHHH
Confidence 34566666777777777666642 22344556666666677777777777777666 33554443
No 210
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.77 E-value=0.035 Score=52.23 Aligned_cols=102 Identities=13% Similarity=0.132 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHH
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPS--SISCNILINGLCRTRKANTALEFLRDMIHRG--LTPDIVTYNSLI 597 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~ 597 (681)
.|...+..+.+.|++++|...|+.+++..+... ...+..++..|...|++++|...|+.+.+.- -+.....+-.++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444556777777777777776532211 2455666777777777777777777776531 011133444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 040136 598 NGLCKMGCIQEALNLFDKLQAEGIYPDA 625 (681)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 625 (681)
.++...|+.++|..+++++++. .|+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~--yP~s 250 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK--YPGT 250 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CcCC
Confidence 5666777777777777777764 4543
No 211
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.70 E-value=0.64 Score=44.85 Aligned_cols=223 Identities=16% Similarity=0.093 Sum_probs=137.1
Q ss_pred HhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCC
Q 040136 403 CKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVT 482 (681)
Q Consensus 403 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 482 (681)
.+.|+.+.|...-+..-..- +.-.-.+...+...|..|+++.|+++++.-+...+..
T Consensus 165 qr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie---------------------- 221 (531)
T COG3898 165 QRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIE---------------------- 221 (531)
T ss_pred HhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc----------------------
Confidence 35667777766666655441 1223456677777778888888887777655432211
Q ss_pred CCHH--HHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 040136 483 ANTV--TYNTLIHAF---LRRGSLHEAHKLVNDMLFRGCPLDEIT-YNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSI 556 (681)
Q Consensus 483 ~~~~--~~~~li~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 556 (681)
++.. .-..|+.+- .-..+...|...-.+..+. .||... -..-..++.+.|+..++-.+++.+-+....|+
T Consensus 222 ~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~-- 297 (531)
T COG3898 222 KDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD-- 297 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--
Confidence 1110 011111111 1112355555555555543 444332 22345678899999999999999998754444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 557 SCNILINGLCRTRKANTALEFLRDMIHR-GLTPD-IVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISW 634 (681)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 634 (681)
.+.. ..+.+.|+ .++.-+++.... ..+|| ....-.+.++-...|++..|..--+.... ..|....|..|.+.
T Consensus 298 ia~l--Y~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdI 371 (531)
T COG3898 298 IALL--YVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADI 371 (531)
T ss_pred HHHH--HHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHH
Confidence 3322 22334554 444444443321 24454 56667778888899999999988888877 58888899999888
Q ss_pred HHhc-CChhHHHHHHHHHHHCCCCC
Q 040136 635 HFKE-GLFDDAFLILHKGVANGFVP 658 (681)
Q Consensus 635 ~~~~-g~~~~A~~~~~~~~~~g~~~ 658 (681)
-... |+-.++...+.+.++..-.|
T Consensus 372 eeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 372 EEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HhhccCchHHHHHHHHHHhcCCCCC
Confidence 6554 99999999999999854333
No 212
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.68 E-value=0.09 Score=44.82 Aligned_cols=58 Identities=22% Similarity=0.228 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 594 NSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGV 652 (681)
Q Consensus 594 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (681)
..++..+...|++++|..+.+.+.... +-|...|..++.+|...|+..+|.+.|+++.
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344444445555555555555555431 2234455555555555555555555554443
No 213
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.67 E-value=0.078 Score=45.22 Aligned_cols=71 Identities=32% Similarity=0.490 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 040136 487 TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMR-----KGIKPSSISC 558 (681)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~ 558 (681)
....++..+...|++++|..+.+.+.... |.+...|..++.+|...|+..+|.+.|+++.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34455666667777777777777777663 66777777777777777777777777776643 2666665543
No 214
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=1.1 Score=47.75 Aligned_cols=176 Identities=16% Similarity=0.123 Sum_probs=85.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHH----HHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHH
Q 040136 154 LIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYN----VVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKA 229 (681)
Q Consensus 154 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 229 (681)
.-+..+.+...++.|+.+-..-. .+..... ...+-+.+.|++++|...|-+-+.. +.| ..+++-
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~------~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQH------LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 34455556666666665543322 1222222 2233344566666666666554432 111 223444
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 040136 230 LCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEA 309 (681)
Q Consensus 230 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 309 (681)
|....+..+-..+++.+.+.|. .+...-..|+.+|.+.++.++-.+..+.-. .|.. ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 4455555555666666666663 334444556666676666666555554433 2211 11133445555555555555
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 040136 310 AKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPS 353 (681)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 353 (681)
..+-..... .... +--.+-..+++++|.+.+..++-
T Consensus 483 ~~LA~k~~~-----he~v---l~ille~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWV---LDILLEDLHNYEEALRYISSLPI 518 (933)
T ss_pred HHHHHHhcc-----CHHH---HHHHHHHhcCHHHHHHHHhcCCH
Confidence 555444322 1111 22223345666666666666553
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.52 E-value=0.0078 Score=44.74 Aligned_cols=61 Identities=28% Similarity=0.419 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 592 TYNSLINGLCKMGCIQEALNLFDKLQAE--GIY---PD-AVTYNTLISWHFKEGLFDDAFLILHKGV 652 (681)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (681)
+++.+..+|...|++++|+..|++..+. ... |+ ..++..+..++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555555554432 011 11 2344455555555555555555555544
No 216
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.48 E-value=0.28 Score=50.28 Aligned_cols=100 Identities=22% Similarity=0.156 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHh
Q 040136 289 DVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVI 368 (681)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 368 (681)
+..+...+...+.+...+..|-++|..|-. ...+++.....+++++|..+-++.++--..+|....+.++.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAE 816 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhh
Confidence 445555555556666677777777776642 23566777778888888888888777434444444555555
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040136 369 SGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAV 420 (681)
Q Consensus 369 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 420 (681)
..+++||.+ +|.+.|+-.+|..+++++..
T Consensus 817 ~DrFeEAqk-----------------------AfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 817 NDRFEEAQK-----------------------AFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhHHHHHH-----------------------HHHHhcchHHHHHHHHHhhh
Confidence 555555555 34455666666666666543
No 217
>PRK15331 chaperone protein SicA; Provisional
Probab=96.46 E-value=0.25 Score=41.86 Aligned_cols=87 Identities=10% Similarity=-0.135 Sum_probs=41.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 040136 565 LCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDA 644 (681)
Q Consensus 565 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 644 (681)
+...|++++|..+|.-+.-.+. -+..-|..|..++-..+++++|+..|......+ .-|...+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHH
Confidence 3345555555555555444321 133334445555555555555555555544432 12333344445555555555555
Q ss_pred HHHHHHHHH
Q 040136 645 FLILHKGVA 653 (681)
Q Consensus 645 ~~~~~~~~~ 653 (681)
+..|+..++
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 555555554
No 218
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.40 E-value=1 Score=43.58 Aligned_cols=305 Identities=14% Similarity=0.064 Sum_probs=165.6
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH--HcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhCCChHH
Q 040136 92 LDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKL--GANKEFKVIDSVLLQMKEEGIICRESLFILIMK--YYGRGGVPGQ 167 (681)
Q Consensus 92 ~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~ 167 (681)
..|..+...|....+..| |..+-..+ .-.||-..|.++-.+..+.- ..+......|+. +-.-.|+++.
T Consensus 67 ~sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~ll-ssDqepLIhlLeAQaal~eG~~~~ 138 (531)
T COG3898 67 ESPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKLL-SSDQEPLIHLLEAQAALLEGDYED 138 (531)
T ss_pred hCcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhhh-hccchHHHHHHHHHHHHhcCchHH
Confidence 456666777766554433 34443333 34677777777766654321 123334444443 3345689999
Q ss_pred HHHHHHHcHhhcCCCCCHHhHHHHHHHH----HhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 040136 168 ATRLLLDMKSVYGCQPTFRSYNVVLDVL----VAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLL 243 (681)
Q Consensus 168 A~~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 243 (681)
|.+-|+.|. .|+.+-..-++++ -+.|..+.|.++-++....-.. -......++...|..|+++.|++++
T Consensus 139 Ar~kfeAMl------~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 139 ARKKFEAML------DDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred HHHHHHHHh------cChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHH
Confidence 999999988 2344333333333 2568888888888777665322 2457778888888999999999988
Q ss_pred HHHHhCC-CCCChhh--HHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHH
Q 040136 244 RDMTKHG-CVPNSVV--YQTLIHALSK---SNRVSEALMLLEEMILMGCTSDVQTFN-DVIHGLCKVNRIHEAAKLVDRM 316 (681)
Q Consensus 244 ~~~~~~~-~~~~~~~--~~~li~~~~~---~~~~~~A~~~~~~m~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~~ 316 (681)
+.-.... +.+++.- -..|+.+-.. .-+...|.+.-.+..+ +.||...-. .-..++.+.|+..++-.+++.+
T Consensus 212 d~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~a 289 (531)
T COG3898 212 DAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETA 289 (531)
T ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHH
Confidence 8766543 2233321 1222222111 2234455554444443 345543322 3346778888888888888888
Q ss_pred HHCCCCCCcccHHHHHHHHHhcCCHHHHH----HHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH
Q 040136 317 LVRGFTPDDITYGVLMHGLCRTGRVDEAR----ALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDV 392 (681)
Q Consensus 317 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 392 (681)
-+....|+.. .+..+.+.|+..... +-++.|+..+..+...+..+-...|++..|.. --+... ...|..
T Consensus 290 WK~ePHP~ia----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa-~Aeaa~--r~~pre 362 (531)
T COG3898 290 WKAEPHPDIA----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARA-KAEAAA--REAPRE 362 (531)
T ss_pred HhcCCChHHH----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHH-HHHHHh--hhCchh
Confidence 8775555532 222344555422111 12334444555555555555555666655554 222222 223444
Q ss_pred HHHHHHHHHHHh-cCChhHHHHHHHHHHh
Q 040136 393 FTFNILIHGLCK-QRRFGSALELVNAMAV 420 (681)
Q Consensus 393 ~~~~~ll~~~~~-~~~~~~A~~~~~~~~~ 420 (681)
..|..|...-.. .|+-.++..++.+...
T Consensus 363 s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 363 SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 444444443322 3555555555555544
No 219
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.40 E-value=1.1 Score=43.75 Aligned_cols=107 Identities=16% Similarity=0.180 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCC
Q 040136 292 TFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGR 371 (681)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 371 (681)
+.+..|.-+...|+...|.++..+.. .|+...|...+.+++..++|++-..+... ..++..|-..+..+.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCC
Confidence 34444555556666666666544432 24666666666666666666666554432 3455666666666666666
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 040136 372 FDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELV 415 (681)
Q Consensus 372 ~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~ 415 (681)
..+|.. +... ++ +..-+..|.+.|++.+|.+.-
T Consensus 253 ~~eA~~-yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 253 KKEASK-YIPK-----IP-----DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHH-HHHh-----CC-----hHHHHHHHHHCCCHHHHHHHH
Confidence 666666 3322 11 133455666666666665543
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.39 E-value=0.011 Score=44.03 Aligned_cols=63 Identities=24% Similarity=0.299 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 556 ISCNILINGLCRTRKANTALEFLRDMIHR----GL-TPD-IVTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
.+|+.+...|...|++++|++.+++.++. |- .|+ ..++..+..++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555666666666666666666655532 10 111 34556666666677777777776666553
No 221
>PRK15331 chaperone protein SicA; Provisional
Probab=96.31 E-value=0.36 Score=40.92 Aligned_cols=88 Identities=15% Similarity=0.024 Sum_probs=57.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 040136 494 AFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANT 573 (681)
Q Consensus 494 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 573 (681)
-+...|++++|..+|.-+...+ +-+..-+..|..++-..+++++|+..|..+...+. -|+..+-....++...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 3456777777777777766653 44555666677777777777777777776665432 244444455667777777777
Q ss_pred HHHHHHHHHH
Q 040136 574 ALEFLRDMIH 583 (681)
Q Consensus 574 A~~~~~~~~~ 583 (681)
|.+.|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 7777777665
No 222
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=1.9 Score=45.56 Aligned_cols=339 Identities=13% Similarity=0.072 Sum_probs=186.1
Q ss_pred hcCCCCHHH--------HHHHhcCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHH---c
Q 040136 75 SLHKITPFQ--------LCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKE---E 143 (681)
Q Consensus 75 ~~~~~~~~~--------~~~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~ 143 (681)
-+.++|.++ +...+...+.+..|.++-.|+.. +......+|...+....+..+... ..+++.+.+ .
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~--p~~~~~~Vl~~Wa~~kI~~~d~~d-~~vld~I~~kls~ 502 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNL--PESQGDRVLLEWARRKIKQSDKMD-EEVLDKIDEKLSA 502 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCC--ccccccHHHHHHHHHHHhccCccc-hHHHHHHHHHhcc
Confidence 345666654 33344557899999999999643 222236677777776666543221 223333322 1
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCC----CCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCC
Q 040136 144 GIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQ----PTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPT 219 (681)
Q Consensus 144 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~ 219 (681)
-.. .--.|..+.+..-.+|+.+-|..+++.=+ +.+.+ .+...+..-+.-..+.|+.+-...++..+...- +
T Consensus 503 ~~~-~~iSy~~iA~~Ay~~GR~~LA~kLle~E~-~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~ 577 (829)
T KOG2280|consen 503 KLT-PGISYAAIARRAYQEGRFELARKLLELEP-RSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---N 577 (829)
T ss_pred cCC-CceeHHHHHHHHHhcCcHHHHHHHHhcCC-CccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---H
Confidence 112 22345566666668999999998887544 21111 011123333444445555555555554444321 1
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHH-HHHH----HCCCCCCHHHHH
Q 040136 220 VYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLL-EEMI----LMGCTSDVQTFN 294 (681)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~-~~m~----~~~~~~~~~~~~ 294 (681)
...|... ..+..-|..++.+..+.. |.. .+-+.|-...+...+-.+. +... ..|..|+. .
T Consensus 578 ~s~l~~~------l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k 642 (829)
T KOG2280|consen 578 RSSLFMT------LRNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---K 642 (829)
T ss_pred HHHHHHH------HHhchhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---H
Confidence 1111111 123344555555554421 010 1112222222222221111 1100 11222332 2
Q ss_pred HHHHHHHhcCCH----------HHHHHHHHHHH-HCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHH
Q 040136 295 DVIHGLCKVNRI----------HEAAKLVDRML-VRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVI 363 (681)
Q Consensus 295 ~li~~~~~~~~~----------~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 363 (681)
.....+.+.... .+-+++.+.+. +.|......+.+--+.-+...|+..+|.++-.+.+-+|-..|-.-+
T Consensus 643 ~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~ 722 (829)
T KOG2280|consen 643 TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKL 722 (829)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHH
Confidence 233333333221 11122222222 1233344455666677788899999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCH
Q 040136 364 NGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQL 443 (681)
Q Consensus 364 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 443 (681)
.+++..+++++.++ +-+... .+.-|.-+..+|.+.|+.++|.+.+-+... +.....+|.+.|++
T Consensus 723 ~aLa~~~kweeLek-fAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~ 786 (829)
T KOG2280|consen 723 TALADIKKWEELEK-FAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDV 786 (829)
T ss_pred HHHHhhhhHHHHHH-HHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccH
Confidence 99999999999888 533222 245677788999999999999988855432 12577889999999
Q ss_pred HHHHHHHHH
Q 040136 444 EKANIIINE 452 (681)
Q Consensus 444 ~~A~~~~~~ 452 (681)
.+|.++--+
T Consensus 787 ~eAad~A~~ 795 (829)
T KOG2280|consen 787 KEAADLAAE 795 (829)
T ss_pred HHHHHHHHH
Confidence 998776543
No 223
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.20 E-value=0.035 Score=40.53 Aligned_cols=54 Identities=19% Similarity=0.180 Sum_probs=30.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 564 GLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
.|.+.+++++|.++++.++..+ +.+...|.....++.+.|++++|.+.+++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4555566666666666665541 22344455555555666666666666666665
No 224
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.16 E-value=1.5 Score=43.21 Aligned_cols=147 Identities=12% Similarity=0.174 Sum_probs=94.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040136 428 VTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKL 507 (681)
Q Consensus 428 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 507 (681)
.+|...++...+..-++.|..+|.+..+.++ +.+++.++++++..++ .|+..-|..+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~----------------------~~h~vyi~~A~~E~~~-~~d~~ta~~i 454 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGI----------------------VGHHVYIYCAFIEYYA-TGDRATAYNI 454 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCC----------------------CCcceeeeHHHHHHHh-cCCcchHHHH
Confidence 4555566666666666666666666655542 3457777888887554 4777788888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040136 508 VNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPS--SISCNILINGLCRTRKANTALEFLRDMIHRG 585 (681)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 585 (681)
|+--... .+.+..--+..+.-+...++-..|..+|+..+.. +..+ ...|..++..-..-|+...+..+-++|.+.
T Consensus 455 felGl~~-f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~- 531 (660)
T COG5107 455 FELGLLK-FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL- 531 (660)
T ss_pred HHHHHHh-CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH-
Confidence 8775554 2334444455666677788888888888866553 2222 467778888778888888888887777763
Q ss_pred CCCCHHHHHHHHHHHH
Q 040136 586 LTPDIVTYNSLINGLC 601 (681)
Q Consensus 586 ~~p~~~~~~~l~~~~~ 601 (681)
.|-..+...+..-|.
T Consensus 532 -~pQen~~evF~Sry~ 546 (660)
T COG5107 532 -VPQENLIEVFTSRYA 546 (660)
T ss_pred -cCcHhHHHHHHHHHh
Confidence 455444444444443
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.15 E-value=0.061 Score=53.36 Aligned_cols=97 Identities=9% Similarity=-0.024 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040136 554 SSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDI----VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYN 629 (681)
Q Consensus 554 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 629 (681)
+...++.+..+|...|++++|+..|++.++. .|+. .+|..+..+|...|+.++|++.++++++.+ .+ .|.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~ 147 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFS 147 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHH
Confidence 5678899999999999999999999999984 5664 358899999999999999999999999852 11 222
Q ss_pred HHHH--HHHhcCChhHHHHHHHHHHHCCC
Q 040136 630 TLIS--WHFKEGLFDDAFLILHKGVANGF 656 (681)
Q Consensus 630 ~l~~--~~~~~g~~~~A~~~~~~~~~~g~ 656 (681)
.+.. .+.......+..++++.+.+.|.
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1111 11122334566777777777664
No 226
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.11 E-value=2.6 Score=47.10 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 040136 287 TSDVQTFNDVIHGLCKVN--RIHEAAKLVDRMLV 318 (681)
Q Consensus 287 ~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~ 318 (681)
.|+ .....+|..+.+.+ ..+.+++...+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 344 33445666777666 56666666665553
No 227
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.18 Score=48.89 Aligned_cols=97 Identities=13% Similarity=0.077 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHH
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVT-YNTLIS 633 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~ 633 (681)
..++..+..+|.+.+++.+|++.-++.++.+ ++|....-.=.++|...|+++.|+..|+++++ +.|+... -+.++.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHH
Confidence 3456778888999999999999999999863 55777777778899999999999999999998 5776554 445555
Q ss_pred HHHhcCChh-HHHHHHHHHHHC
Q 040136 634 WHFKEGLFD-DAFLILHKGVAN 654 (681)
Q Consensus 634 ~~~~~g~~~-~A~~~~~~~~~~ 654 (681)
.--+..+.. ...++|..|...
T Consensus 334 l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 555555544 447788888864
No 228
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.06 E-value=0.15 Score=41.62 Aligned_cols=101 Identities=20% Similarity=0.226 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 519 DEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLIN 598 (681)
Q Consensus 519 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 598 (681)
|..++..++-++++.|+.+....+.+..- |+..+... ..+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566667777777777776666665433 22211100 0000 0112346688888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcC
Q 040136 599 GLCKMGCIQEALNLFDKLQAE-GIYPDAVTYNTLISWHFKEG 639 (681)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g 639 (681)
+|+..|++..|.++.+...+. +++.+..+|..|+......-
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 888888888888888888776 66667888888887765443
No 229
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.79 E-value=0.12 Score=42.12 Aligned_cols=96 Identities=14% Similarity=0.144 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040136 428 VTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKL 507 (681)
Q Consensus 428 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 507 (681)
.++..++.++++.|+.+....+++..-.-++.....+.. --......|+..+..+++.+|+..|++..|.++
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~--------~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~ 74 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGD--------YPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKL 74 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCc--------cCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHH
Confidence 445555566666666665555554432211111000000 011234568888888888888888888888888
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHH
Q 040136 508 VNDMLFR-GCPLDEITYNGLIKALC 531 (681)
Q Consensus 508 ~~~~~~~-~~~~~~~~~~~l~~~~~ 531 (681)
++...+. +++.+..+|..|+.-..
T Consensus 75 vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 75 VDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 8887654 56667777877776543
No 230
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.77 E-value=0.94 Score=40.80 Aligned_cols=145 Identities=13% Similarity=0.031 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---C--CCCCHHHHHHH
Q 040136 487 TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK---G--IKPSSISCNIL 561 (681)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~p~~~~~~~l 561 (681)
.|+.....|...|.++-|-..+++.-+. ....++++|+++|++...- + ...-...+...
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 3444555566666666665555544322 2334566677777665442 1 01112344555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C--CCCHHHHHHHHH
Q 040136 562 INGLCRTRKANTALEFLRDMIHR----GLTPDI-VTYNSLINGLCKMGCIQEALNLFDKLQAEG-I--YPDAVTYNTLIS 633 (681)
Q Consensus 562 ~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~--~p~~~~~~~l~~ 633 (681)
.+.+.+..++++|-..+.+-... .-.++. ..|-..|-.+....|+..|...++.--+.+ + .-+..+...|+.
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 66677777777766555443221 111222 234444555666678888888888755431 1 223556777777
Q ss_pred HHHhcCChhHHHHHH
Q 040136 634 WHFKEGLFDDAFLIL 648 (681)
Q Consensus 634 ~~~~~g~~~~A~~~~ 648 (681)
+| ..|+.+++..++
T Consensus 237 ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 237 AY-DEGDIEEIKKVL 250 (308)
T ss_pred Hh-ccCCHHHHHHHH
Confidence 65 557777665543
No 231
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=1.1 Score=41.87 Aligned_cols=53 Identities=21% Similarity=0.213 Sum_probs=30.8
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 229 ALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMI 282 (681)
Q Consensus 229 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 282 (681)
.....|+..+|..+|....... +-+...--.++++|...|+.+.|..++..+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 3445666666666666665543 2334445556666666666666666666554
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.66 E-value=0.17 Score=50.41 Aligned_cols=66 Identities=17% Similarity=0.145 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 517 PLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSS----ISCNILINGLCRTRKANTALEFLRDMIHR 584 (681)
Q Consensus 517 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 584 (681)
|.+...++.+..+|.+.|++++|+..|++.++.. |+. .+|..+..+|...|+.++|++.+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5678899999999999999999999999999964 453 45899999999999999999999999984
No 233
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.58 E-value=1 Score=37.99 Aligned_cols=44 Identities=16% Similarity=0.170 Sum_probs=22.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 040136 489 NTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNA 533 (681)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 533 (681)
..++..+...+.......+++.+...+ +.+....+.++..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 344445555555555555555555544 24444555555555543
No 234
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=1.8 Score=40.51 Aligned_cols=165 Identities=16% Similarity=0.077 Sum_probs=102.7
Q ss_pred HHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 040136 167 QATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDM 246 (681)
Q Consensus 167 ~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 246 (681)
...++++++. ++....--.-.......|++.+|...|......... +...-..+..+|...|+.+.|..++..+
T Consensus 121 qlr~~ld~~~-----~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 121 QLRQFLDKVL-----PAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred HHHHHHHHhc-----ChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 4445555555 222222223334566788899999999888886433 4566777888899999999999999987
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCc
Q 040136 247 TKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGF-TPDD 325 (681)
Q Consensus 247 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~ 325 (681)
....-.........-|..+.+.....+...+-++.... +-|...-..+...+...|+.+.|.+.+-.++.... .-|.
T Consensus 195 P~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~ 272 (304)
T COG3118 195 PLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDG 272 (304)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCc
Confidence 75431122222233455666666666555655555542 33677777788888888999998887777665421 1234
Q ss_pred ccHHHHHHHHHhcC
Q 040136 326 ITYGVLMHGLCRTG 339 (681)
Q Consensus 326 ~~~~~l~~~~~~~g 339 (681)
..-..++..+.--|
T Consensus 273 ~~Rk~lle~f~~~g 286 (304)
T COG3118 273 EARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHHHhcC
Confidence 44445554444433
No 235
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.46 E-value=1.3 Score=46.03 Aligned_cols=164 Identities=15% Similarity=0.038 Sum_probs=111.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHH
Q 040136 487 TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEI------TYNGLIKALCN----AGAVDKGLGLFEEMMRKGIKPSSI 556 (681)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~ 556 (681)
.+..++....=.|+-+.+++.+.+..+.+---.+. .|..++..++. ....+.|.++++.+.+. -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 45567777777899999999998877653222222 23333333332 34678899999999886 35544
Q ss_pred HH-HHHHHHHHhcCCHHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 557 SC-NILINGLCRTRKANTALEFLRDMIHRG--L-TPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLI 632 (681)
Q Consensus 557 ~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 632 (681)
.| -.-.+.+...|++++|++.+++..... . ......+--+..++.-.++|++|...|..+.+.+ .-+..+|..+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 44 334566778899999999999866421 1 1123445567778888999999999999999863 44455565555
Q ss_pred HH-HHhcCCh-------hHHHHHHHHHHH
Q 040136 633 SW-HFKEGLF-------DDAFLILHKGVA 653 (681)
Q Consensus 633 ~~-~~~~g~~-------~~A~~~~~~~~~ 653 (681)
.+ +...|+. ++|.+++++...
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 44 4567777 888888887664
No 236
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.44 E-value=0.36 Score=38.60 Aligned_cols=91 Identities=19% Similarity=0.120 Sum_probs=64.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCC
Q 040136 529 ALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDI---VTYNSLINGLCKMGC 605 (681)
Q Consensus 529 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~ 605 (681)
+....|+.+.|++.|.+.+..- +.....||.-..++.-+|+.++|++-+++.++..-.-.. ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4567788888888888888753 236678888888888888888888888888774211121 223333445677888
Q ss_pred HHHHHHHHHHHHHCC
Q 040136 606 IQEALNLFDKLQAEG 620 (681)
Q Consensus 606 ~~~A~~~~~~~~~~~ 620 (681)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888888887766
No 237
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.36 E-value=6.2 Score=44.31 Aligned_cols=127 Identities=13% Similarity=0.170 Sum_probs=61.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHcHhhcCC--CCCHHhHHHHHHHHHhc-CCcCcHHHHHHHHHHCCCCCChhhHHHH---
Q 040136 153 ILIMKYYGRGGVPGQATRLLLDMKSVYGC--QPTFRSYNVVLDVLVAG-NCHKVAPNLFYDMLSKGISPTVYTFGVV--- 226 (681)
Q Consensus 153 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~-~~~~~A~~~~~~m~~~~~~p~~~~~~~l--- 226 (681)
...++.+.+.+++.+|..+.++-.-...+ ..++..+-.-+.++++. ++.+-...++-.+...++.-+ .|...
T Consensus 681 La~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvtk~--~y~~~~~s 758 (1265)
T KOG1920|consen 681 LAKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVTKT--MYSSTSGS 758 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhhhh--hccccccc
Confidence 34566677788888887777665422221 12233333334455543 344444444444433221111 11111
Q ss_pred -HHHHHhc----CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC--ChhHHHHHHHHHHH
Q 040136 227 -MKALCMV----NEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSN--RVSEALMLLEEMIL 283 (681)
Q Consensus 227 -l~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~ 283 (681)
...|... ..++...+.++....+. .|+ .-...+|..|.+.+ ..+.|+....+...
T Consensus 759 ~k~~~~~r~~~d~kv~~vc~~vr~~l~~~-~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 759 GKQVYMSRDPYDNKVNSVCDAVRNALERR-APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred cceeEEeccchhhHHHHHHHHHHHHHhhc-Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 0111111 22344444444444443 454 44566788888877 67777777766664
No 238
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.33 E-value=2.3 Score=39.09 Aligned_cols=171 Identities=23% Similarity=0.305 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 486 VTYNTLIHAFLRRGSLHEAHKLVNDMLFRG--CPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILIN 563 (681)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 563 (681)
..|+.-+ .-.+.|++++|.+.|+.+.... .+-...+...++-++.+.+++++|+...++.+.....-...-|-..+.
T Consensus 36 ~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 36 ELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 3444333 3567899999999999998762 223455666677788899999999999999988733222233333344
Q ss_pred HHHh-------cCCH---HHHHHHHHHHHHC----CCCCCHHHH------------HHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 564 GLCR-------TRKA---NTALEFLRDMIHR----GLTPDIVTY------------NSLINGLCKMGCIQEALNLFDKLQ 617 (681)
Q Consensus 564 ~~~~-------~g~~---~~A~~~~~~~~~~----~~~p~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~ 617 (681)
+++. ..+. .+|..-|++++.+ ...||...- ..+..-|.+.|.+..|..-++.|+
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~ 194 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVL 194 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 4332 1233 3455555555543 223333211 245677889999999999999999
Q ss_pred HCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 040136 618 AEGIYPD----AVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDA 661 (681)
Q Consensus 618 ~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 661 (681)
+. .|+ ...+-.+..+|...|..++|.+.-+-+..+ .|+..
T Consensus 195 e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N--~p~s~ 238 (254)
T COG4105 195 EN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN--YPDSQ 238 (254)
T ss_pred hc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc--CCCCc
Confidence 97 333 335566778899999999999987777653 45544
No 239
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.33 E-value=0.24 Score=45.68 Aligned_cols=61 Identities=20% Similarity=0.176 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHHHCCC-CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 040136 189 NVVLDVLVAGNCHKVAPNLFYDMLSKGI-SP-TVYTFGVVMKALCMVNEVDSACSLLRDMTKH 249 (681)
Q Consensus 189 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 249 (681)
--|..++...|++++|..+|..+.+.-. .| -...+.-|..+..+.|+.++|...|+++.+.
T Consensus 182 yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 182 YWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3344555555555555555555544311 11 1233444444555555666666666655554
No 240
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.30 E-value=0.27 Score=45.32 Aligned_cols=95 Identities=18% Similarity=0.150 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHH
Q 040136 557 SCNILINGLCRTRKANTALEFLRDMIHRGL--TPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD----AVTYNT 630 (681)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~ 630 (681)
.|+.-+.. .+.|++..|.+.|...++... .-....+-+|.+++...|++++|..+|..+.+. .|+ ...+.-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~--~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD--YPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh--CCCCCCChHHHHH
Confidence 34443333 345556666666666665410 001223445666666666666666666666654 222 345555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC
Q 040136 631 LISWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
|..+..+.|+.++|..+|+++.+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 666666666666666666666653
No 241
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.25 Score=48.03 Aligned_cols=78 Identities=14% Similarity=0.017 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 591 VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNL 670 (681)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~ 670 (681)
.++..|..++.+.+++.+|++.-++.++.+ ++|......-..+|...|+++.|+..|+++++ +.|+......=+..|
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 456778889999999999999999999974 66777888889999999999999999999998 678876665555554
Q ss_pred H
Q 040136 671 V 671 (681)
Q Consensus 671 ~ 671 (681)
.
T Consensus 335 ~ 335 (397)
T KOG0543|consen 335 K 335 (397)
T ss_pred H
Confidence 4
No 242
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.11 E-value=2.6 Score=38.65 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=32.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040136 491 LIHAFLRRGSLHEAHKLVNDMLFRGCPLDE---ITYNGLIKALCNAGAVDKGLGLFEEMMR 548 (681)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 548 (681)
+...|.+.|.+..|..-+++|++. .+-.. ..+-.+..+|...|-.++|...-.-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 445566777777777777777665 23222 2334445566666666666655444433
No 243
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.07 E-value=0.6 Score=44.00 Aligned_cols=116 Identities=18% Similarity=0.078 Sum_probs=61.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHH--HHHHHHHHhcCCHHH
Q 040136 498 RGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSS--ISC--NILINGLCRTRKANT 573 (681)
Q Consensus 498 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~--~~l~~~~~~~g~~~~ 573 (681)
.|+..+|-..++++++. .|.|...++..=.+|...|+.+.-...++++... -.++. .+| ..+.-++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45555555556665554 4556666665556666666666665555555543 11222 122 223334445566666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040136 574 ALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKL 616 (681)
Q Consensus 574 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 616 (681)
|.+.-++..+-+ +.|...-.++...+-..|++.++.+++.+-
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 666666655532 224444445555555666666666665543
No 244
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.05 E-value=3.4 Score=39.63 Aligned_cols=230 Identities=13% Similarity=0.108 Sum_probs=122.9
Q ss_pred HhcCChhHHHHHHHHHHhcC--CCcCH------hhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCccccHHHHHHHH
Q 040136 403 CKQRRFGSALELVNAMAVKG--CEPNI------VTYTILVDGFCKEG-QLEKANIIINEMLAKGLSLNTGDRIEEALGLY 473 (681)
Q Consensus 403 ~~~~~~~~A~~~~~~~~~~~--~~~~~------~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~ 473 (681)
.+.|+.+.|..++.+..... ..|+. ..|+.-...+ +.+ +++.|...+++..+ ++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~----------------~l 66 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYD----------------IL 66 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHH----------------HH
Confidence 34566666666666655432 12221 1233333333 344 78888777765543 22
Q ss_pred HH-HHhcCCCCC-----HHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040136 474 QD-MLLEGVTAN-----TVTYNTLIHAFLRRGSLH---EAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFE 544 (681)
Q Consensus 474 ~~-~~~~~~~~~-----~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 544 (681)
.. -......++ ..++..++.+|...+..+ +|..+++.+... .+..+.++..-+..+.+.++.+++.+.+.
T Consensus 67 ~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~ 145 (278)
T PF08631_consen 67 EKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILM 145 (278)
T ss_pred HhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHH
Confidence 22 110111222 245677888888877654 566666666544 33345555556677777899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHH-HHH-HHHH---HHHhcCC------HHHHH
Q 040136 545 EMMRKGIKPSSISCNILINGL---CRTRKANTALEFLRDMIHRGLTPDIV-TYN-SLIN---GLCKMGC------IQEAL 610 (681)
Q Consensus 545 ~~~~~~~~p~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~-~l~~---~~~~~g~------~~~A~ 610 (681)
+|+..- .-....+..++..+ ... ....|...+..++...+.|... ... .++. .....++ .+...
T Consensus 146 ~mi~~~-~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~ 223 (278)
T PF08631_consen 146 RMIRSV-DHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLE 223 (278)
T ss_pred HHHHhc-ccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHH
Confidence 999862 21233344444443 333 3456777777766654555543 111 1111 1122222 34444
Q ss_pred HHHHHHHHC-CCCCCHHHHH---HHH----HHHHhcCChhHHHHHHHHHH
Q 040136 611 NLFDKLQAE-GIYPDAVTYN---TLI----SWHFKEGLFDDAFLILHKGV 652 (681)
Q Consensus 611 ~~~~~~~~~-~~~p~~~~~~---~l~----~~~~~~g~~~~A~~~~~~~~ 652 (681)
+++....+. +.+.+..+-. +++ ..+.+.+++++|.+.|+-.+
T Consensus 224 ~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 224 ELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 445533332 2233333322 232 34678899999999998655
No 245
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.04 E-value=4 Score=40.34 Aligned_cols=52 Identities=13% Similarity=0.064 Sum_probs=32.4
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHH
Q 040136 426 NIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDML 477 (681)
Q Consensus 426 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 477 (681)
+--.+..++.++.-.|++++|.+..+.|.+.....+..+..-+-+.++.+..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni~Li~~~~ 355 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENIKLIRHFR 355 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHh
Confidence 4445567777888888888888888888876544333333333444444433
No 246
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.01 E-value=0.35 Score=38.65 Aligned_cols=92 Identities=17% Similarity=0.046 Sum_probs=73.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcC
Q 040136 563 NGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD---AVTYNTLISWHFKEG 639 (681)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g 639 (681)
-++...|+.+.|++.|.+.+.. .+-....||.-.+++.-.|+.++|+.=+++.++..-.-. ...|..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3567889999999999999985 445778999999999999999999999999998621112 223444556688899
Q ss_pred ChhHHHHHHHHHHHCC
Q 040136 640 LFDDAFLILHKGVANG 655 (681)
Q Consensus 640 ~~~~A~~~~~~~~~~g 655 (681)
+-+.|..-|+.+.+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 9999999999888866
No 247
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.99 E-value=0.79 Score=47.61 Aligned_cols=129 Identities=14% Similarity=0.122 Sum_probs=73.2
Q ss_pred HHHHhcCCCChHHHHHHHHHhhhCCCCCCCHH-----HHHHHHHH-HHc---CCCchHHHHHHHHHHHcCCCCCHHHHH-
Q 040136 84 LCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFD-----VYYVLIDK-LGA---NKEFKVIDSVLLQMKEEGIICRESLFI- 153 (681)
Q Consensus 84 ~~~~l~~~~~~~~al~~~~~~~~~~~~~~~~~-----~~~~l~~~-~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~- 153 (681)
+..++-..||-+..++.+..+.+..++....- .|+.++.. +.- ..+.+.|.+++..+.+.-+ +...|.
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP--~s~lfl~ 271 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYP--NSALFLF 271 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCC--CcHHHHH
Confidence 34444568888888888888766555443322 23333322 222 4566678888888877653 333333
Q ss_pred HHHHHHHhCCChHHHHHHHHHcHhhcCC--CCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHC
Q 040136 154 LIMKYYGRGGVPGQATRLLLDMKSVYGC--QPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSK 214 (681)
Q Consensus 154 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 214 (681)
.-.+.+...|++++|++.|++......- +.....+--+.-.+.-.+++++|...|.++.+.
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 4566677778888888888765411000 111122333344455566666666666666664
No 248
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.97 E-value=1.9 Score=36.27 Aligned_cols=128 Identities=13% Similarity=0.184 Sum_probs=91.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 523 YNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCK 602 (681)
Q Consensus 523 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 602 (681)
...++..+...+.......+++.+...+. .+....+.++..|++.+ ..+.+++++. ..+......++..|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 34567777778889999999999998864 57788899999998764 4455555552 1234445567888889
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 603 MGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKE-GLFDDAFLILHKGVANGFVPNDATWYILVRNLVKE 673 (681)
Q Consensus 603 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 673 (681)
.+-++++.-++.++.. +...+..+... ++.+.|.+++++- .+...|..++..+...
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~~ 138 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLDK 138 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHcc
Confidence 9999999999988743 22334444444 8889999988763 2677888888877643
No 249
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.80 E-value=2.2 Score=40.93 Aligned_cols=57 Identities=14% Similarity=0.005 Sum_probs=26.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040136 491 LIHAFLRRGSLHEAHKLVNDMLFRGC-----PLDEITYNGLIKALCNAGAVDKGLGLFEEMM 547 (681)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 547 (681)
+..++...+.++++++.|+...+.-. -....++..|...|.+..|+++|.-+...+.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~ 189 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAA 189 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHH
Confidence 44444445555555555555433210 0122345555555555555555555544443
No 250
>PRK11906 transcriptional regulator; Provisional
Probab=94.78 E-value=3.4 Score=41.63 Aligned_cols=110 Identities=12% Similarity=0.030 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040136 501 LHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRD 580 (681)
Q Consensus 501 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 580 (681)
..+|.++.+...+.+ +.|+.....+..+....++++.|..+|+++...++. ...+|........-.|+.++|.+.+++
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445566666666664 556666666666666666677777777777664321 334555555555666777777777776
Q ss_pred HHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHH
Q 040136 581 MIHRGLTPDI---VTYNSLINGLCKMGCIQEALNLFDK 615 (681)
Q Consensus 581 ~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~ 615 (681)
..+. .|.. .+....++.|+. ...++|+.++-+
T Consensus 398 alrL--sP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 432 (458)
T PRK11906 398 SLQL--EPRRRKAVVIKECVDMYVP-NPLKNNIKLYYK 432 (458)
T ss_pred Hhcc--CchhhHHHHHHHHHHHHcC-CchhhhHHHHhh
Confidence 5553 3332 222233334443 345556655544
No 251
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.67 E-value=2.6 Score=38.15 Aligned_cols=206 Identities=15% Similarity=0.137 Sum_probs=99.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 223 FGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCK 302 (681)
Q Consensus 223 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 302 (681)
|.....+|....++++|..-+.+..+.. ..|...|. ..+.++.|.-+++++.+. .--+..|+.....|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~y-Ennrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 4444455666677777776666655321 11111111 122234444444444432 1122334444555555
Q ss_pred cCCHHHHHHHHHHHHHC--CCCCCc--ccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 040136 303 VNRIHEAAKLVDRMLVR--GFTPDD--ITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAI 378 (681)
Q Consensus 303 ~~~~~~a~~~~~~~~~~--~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 378 (681)
.|..+.|-..+++.-+. ++.|+. ..|.--+......++...|.++ +......+++..++.+|-..
T Consensus 104 ~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el-----------~gk~sr~lVrl~kf~Eaa~a 172 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL-----------YGKCSRVLVRLEKFTEAATA 172 (308)
T ss_pred hCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH-----------HHHhhhHhhhhHHhhHHHHH
Confidence 66655555555544321 222321 1122222222223333333333 33344566666666666552
Q ss_pred HHHHHHh---CCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCcCHhhHHHHHHHHHhcCCHHHHHHHH
Q 040136 379 FYDSMLS---VGCIPDV-FTFNILIHGLCKQRRFGSALELVNAMAVKG---CEPNIVTYTILVDGFCKEGQLEKANIII 450 (681)
Q Consensus 379 ~~~~~~~---~~~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 450 (681)
+.+...- ..-.++. ..|...|-.+.-..++..|.+.++.--+.+ -..+..+...|+.+|- .|+.+++..++
T Consensus 173 ~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 173 FLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 3222111 0111121 335555666777788999999988754432 1235567777887774 67777766655
No 252
>PRK11906 transcriptional regulator; Provisional
Probab=94.59 E-value=3.6 Score=41.39 Aligned_cols=146 Identities=14% Similarity=0.034 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHH---hCCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 501 LHEAHKLVNDML---FRGCPLDEITYNGLIKALCN---------AGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRT 568 (681)
Q Consensus 501 ~~~A~~~~~~~~---~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 568 (681)
.+.|..+|.+.. +.. |.....|..+..++.. ..+..+|.++-+++++.+.. |......+..+....
T Consensus 274 ~~~Al~lf~ra~~~~~ld-p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQ-TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCC-cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence 556777777777 331 2235555555444432 23456788888888887644 788888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhHH
Q 040136 569 RKANTALEFLRDMIHRGLTPD-IVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDA---VTYNTLISWHFKEGLFDDA 644 (681)
Q Consensus 569 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A 644 (681)
++.+.|...|++.... .|| ..+|......+.-.|+.++|.+.+++..+ +.|.. .+....++.|+.. ..++|
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~-~~~~~ 426 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPN-PLKNN 426 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCC-chhhh
Confidence 9999999999999984 565 46666677777889999999999999887 46653 3334445566655 56778
Q ss_pred HHHHHHHHH
Q 040136 645 FLILHKGVA 653 (681)
Q Consensus 645 ~~~~~~~~~ 653 (681)
.+++-+-.+
T Consensus 427 ~~~~~~~~~ 435 (458)
T PRK11906 427 IKLYYKETE 435 (458)
T ss_pred HHHHhhccc
Confidence 877765443
No 253
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.48 E-value=7 Score=40.51 Aligned_cols=398 Identities=13% Similarity=0.061 Sum_probs=199.5
Q ss_pred ChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hCCChHHHHHH
Q 040136 93 DVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYG-RGGVPGQATRL 171 (681)
Q Consensus 93 ~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~ 171 (681)
+++.+...++..+...| --...|...+..=.+.|..+.+..+|++.+..- +.+...|......+. ..|+.+.....
T Consensus 60 ~~~~~r~~y~~fL~kyP--l~~gyW~kfA~~E~klg~~~~s~~Vfergv~ai-p~SvdlW~~Y~~f~~n~~~d~~~lr~~ 136 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYP--LCYGYWKKFADYEYKLGNAENSVKVFERGVQAI-PLSVDLWLSYLAFLKNNNGDPETLRDL 136 (577)
T ss_pred HHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 34455555555554443 223345555666678899999999999987653 356667765544443 45788888889
Q ss_pred HHHcHhhcCCCC-CHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHH---Hhc------CChhHHHH
Q 040136 172 LLDMKSVYGCQP-TFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKAL---CMV------NEVDSACS 241 (681)
Q Consensus 172 ~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~------g~~~~A~~ 241 (681)
|++...-.|..- ....|...|..-..++++.....++++.++. |. ..|+....-| .+. ...+++.+
T Consensus 137 fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~-~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~ 212 (577)
T KOG1258|consen 137 FERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PL-HQLNRHFDRFKQLLNQNEEKILLSIDELIQ 212 (577)
T ss_pred HHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hh-hHhHHHHHHHHHHHhcCChhhhcCHHHHHH
Confidence 998885555322 2345777787778888889999999998875 22 2233222222 111 22233333
Q ss_pred HHHHHHhC-C---CCCChhhHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040136 242 LLRDMTKH-G---CVPNSVVYQTLIHALSK-SNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRM 316 (681)
Q Consensus 242 ~~~~~~~~-~---~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 316 (681)
+-....+. . ..+....+..-+.--.. .+..+++..++.+... ..-..+...-......-.++.-
T Consensus 213 l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~~s~~~~~kr~~fE~~ 281 (577)
T KOG1258|consen 213 LRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQKSEEEEEKRWGFEEG 281 (577)
T ss_pred HhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-----------HHHHHHHhhHhHHHHHHhhhhh
Confidence 32222211 0 00011111111111000 1111111111111110 0001111111222222233333
Q ss_pred HHCC---CC----CCcccHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 040136 317 LVRG---FT----PDDITYGVLMHGLCRTGRVDEARALLNKIPSA---NVVLLNTVINGYVISGRFDEAKAIFYDSMLSV 386 (681)
Q Consensus 317 ~~~~---~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 386 (681)
.+.. ++ ++..+|..-+..-...|+.+.+.-+|++..-+ -...|-..+......|+.+-|.. +.....+-
T Consensus 282 IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~-~~~~~~~i 360 (577)
T KOG1258|consen 282 IKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANN-VLARACKI 360 (577)
T ss_pred ccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHH-HHHhhhhh
Confidence 3221 12 23346677777777888888888888887663 23456666666666688887776 33333332
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccc
Q 040136 387 GCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIV-TYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDR 465 (681)
Q Consensus 387 ~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 465 (681)
.++-.+.+.-.-....-..|+++.|..+++.+.+.- |+.. .-..-+..-.+.|..+.+.. ..++...-.
T Consensus 361 ~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~~------- 430 (577)
T KOG1258|consen 361 HVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANY-KNELYSSIY------- 430 (577)
T ss_pred cCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhH-HHHHHHHhc-------
Confidence 333222222222222345678999999998888763 4432 22222333445666666552 112111100
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 040136 466 IEEALGLYQDMLLEGVTANTVTYNTLIHA-----FLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAG 534 (681)
Q Consensus 466 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 534 (681)
.| .-+......+.-- +.-.++.+.|..++.++.+. .+++...|..++......+
T Consensus 431 -------------~~-~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 431 -------------EG-KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred -------------cc-ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 00 0122222222211 22356778888888887776 5667777777766554443
No 254
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.45 E-value=8.7 Score=41.47 Aligned_cols=46 Identities=15% Similarity=0.303 Sum_probs=24.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 040136 596 LINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAF 645 (681)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 645 (681)
++..+.+..+.+.++.+.+..-+. +...|..+++.+.+.+..+.-.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~ 756 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCY 756 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHH
Confidence 344455555566555555544332 4555666666666655444333
No 255
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.42 E-value=3.5 Score=41.62 Aligned_cols=58 Identities=12% Similarity=0.135 Sum_probs=31.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 525 GLIKALCNAGAVDKGLGLFEEMMRKGIK-PSSISCNILINGLCRTRKANTALEFLRDMI 582 (681)
Q Consensus 525 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 582 (681)
.+..++-+.|+.++|++.|+++.+.... .+......|+.++...+.+.++..++.+.-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3444555566666666666666553211 122344556666666666666666666543
No 256
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.30 E-value=2 Score=43.95 Aligned_cols=99 Identities=15% Similarity=0.163 Sum_probs=49.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 040136 495 FLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTA 574 (681)
Q Consensus 495 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 574 (681)
..+.|+.+.|.++.++ ..+...|..|.+...+.|+++-|+..|.+... +..|+-.|.-.|+.+.-
T Consensus 328 Al~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHH
Confidence 4455666666655432 22555666666666666666666666655432 23444445556665555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040136 575 LEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFD 614 (681)
Q Consensus 575 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 614 (681)
.++.+.....| -++....++...|+.++..+++.
T Consensus 393 ~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 393 SKLAKIAEERG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555544432 13333344444555555554443
No 257
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.02 E-value=2.7 Score=43.07 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=13.0
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHhhc
Q 040136 325 DITYGVLMHGLCRTGRVDEARALLNKI 351 (681)
Q Consensus 325 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 351 (681)
...|..|.+...+.|+++-|++.|.+.
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 334445555555555555555544443
No 258
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.96 E-value=3.5 Score=35.13 Aligned_cols=136 Identities=12% Similarity=0.088 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHH--HHH
Q 040136 487 TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEI-TYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSI-SCN--ILI 562 (681)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~--~l~ 562 (681)
.|...+. +.+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.....|-.. -.. --.
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 3433333 456777888888888887776543222 22223344566788888888888877654333322 111 112
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040136 563 NGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYP 623 (681)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 623 (681)
..+...|.+++.....+.+...+-+.-...-..|.-+-.+.|++.+|...|..+......|
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 2345667777776666665544333333344556666667777777777777776653344
No 259
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.96 E-value=2.8 Score=33.92 Aligned_cols=67 Identities=15% Similarity=0.230 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 040136 485 TVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIK 552 (681)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 552 (681)
.......+......|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.++-+.|++
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 334455566667777777777777777653 3567777777777888888888888888877777653
No 260
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.81 E-value=0.75 Score=42.31 Aligned_cols=69 Identities=22% Similarity=0.255 Sum_probs=34.3
Q ss_pred hHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcC----------------CcCcHHHHHHHHHHCCCCCChhhHHHHHH
Q 040136 165 PGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGN----------------CHKVAPNLFYDMLSKGISPTVYTFGVVMK 228 (681)
Q Consensus 165 ~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------------~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 228 (681)
++--...+..|. ++|+..|..+|+.||.++-+.. +.+=++.++++|...|+.||..+-..|++
T Consensus 88 veFIy~ALk~m~-eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn 166 (406)
T KOG3941|consen 88 VEFIYTALKYMK-EYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN 166 (406)
T ss_pred HHHHHHHHHHHH-HhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 333334445555 6666677777766666543322 11224444455555555555555555555
Q ss_pred HHHhcC
Q 040136 229 ALCMVN 234 (681)
Q Consensus 229 ~~~~~g 234 (681)
++.+.+
T Consensus 167 ~FGr~~ 172 (406)
T KOG3941|consen 167 AFGRWN 172 (406)
T ss_pred Hhcccc
Confidence 544443
No 261
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.75 E-value=3.2 Score=41.95 Aligned_cols=57 Identities=16% Similarity=0.255 Sum_probs=28.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 561 LINGLCRTRKANTALEFLRDMIHRGLT-PDIVTYNSLINGLCKMGCIQEALNLFDKLQ 617 (681)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 617 (681)
+..++.+.|+.++|++.+++|.+.... -+..+...|+.++...+.+.++..++.+--
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 444445555555555555555543111 112334455555555555555555555543
No 262
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.72 E-value=6.9 Score=37.71 Aligned_cols=174 Identities=12% Similarity=0.055 Sum_probs=104.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-----cCHh
Q 040136 358 LLNTVINGYVISGRFDEAKAIFYDSML-SVGCIPD---VFTFNILIHGLCKQRRFGSALELVNAMAVKGCE-----PNIV 428 (681)
Q Consensus 358 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~p~---~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~ 428 (681)
.|..+.+++.+..++.+++. +-+.-. -.|..|. ......+..++...+.++++++.|+........ ....
T Consensus 85 a~lnlar~~e~l~~f~kt~~-y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTIS-YCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHH-HHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 45556666666666666666 433322 2232221 123344667777788899999998887653211 1245
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHH
Q 040136 429 TYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVT--ANTVTYNTLIHAFLRRGSLHEAHK 506 (681)
Q Consensus 429 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~ 506 (681)
++-.|...|.+..++++|.-+.....+. .+...-.++. -.....-.|.-++...|+...|.+
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~l----------------v~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e 227 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAEL----------------VNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAME 227 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHH----------------HHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 7888999999999999998776654432 1111100000 011122334556777888777777
Q ss_pred HHHHHHh----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040136 507 LVNDMLF----RGCPL-DEITYNGLIKALCNAGAVDKGLGLFEEMMR 548 (681)
Q Consensus 507 ~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 548 (681)
.-++..+ .|-.+ .......+.+.|...|+.+.|+.-|+++..
T Consensus 228 ~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 228 CCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 7666543 34222 334556678889999999999988887654
No 263
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.70 E-value=4 Score=34.84 Aligned_cols=135 Identities=10% Similarity=0.048 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHH
Q 040136 113 TFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESL-FILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVV 191 (681)
Q Consensus 113 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 191 (681)
+...|...+. +.+.+..++|..-|.++.+.|...-+.. .....-.....|+...|...|+++- .....|.+.--..-
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia-~dt~~P~~~rd~AR 135 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIA-ADTSIPQIGRDLAR 135 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHh-ccCCCcchhhHHHH
Confidence 3344444443 3455666777777777777665333322 2233444556677777777777776 22222322211111
Q ss_pred H---HHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 040136 192 L---DVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKH 249 (681)
Q Consensus 192 l---~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 249 (681)
+ -.++.+|.+++.....+-+...+-+.-...-..|.-+-.+.|++..|.+.|..+...
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 1 234567777777777776665543333444555666666778888888888777654
No 264
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.64 E-value=4.2 Score=34.98 Aligned_cols=100 Identities=21% Similarity=0.278 Sum_probs=46.5
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040136 241 SLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRG 320 (681)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 320 (681)
+.++.+.+.+++|+...+..+++.+.+.|++.. +..+...++-+|.......+-.+.. ....+.++--.|.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence 334444555666666666666666666666433 3334444445555444443322222 222233333333221
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHhh
Q 040136 321 FTPDDITYGVLMHGLCRTGRVDEARALLNK 350 (681)
Q Consensus 321 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 350 (681)
=...+..+++.+...|++-+|.+...+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 001233445555555555555555444
No 265
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.48 E-value=2.3 Score=35.23 Aligned_cols=71 Identities=10% Similarity=0.005 Sum_probs=31.5
Q ss_pred HhCCChHHHHHHHHHcHhhcCCCC-CHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 040136 160 GRGGVPGQATRLLLDMKSVYGCQP-TFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKAL 230 (681)
Q Consensus 160 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 230 (681)
.+.|++++|.+.|+.+..++...+ ....--.++.++.+.+++++|...+++.++....-...-|...+.++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 345555555555555543222211 12233344455555555555555555555553222223344444443
No 266
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.48 E-value=6.2 Score=36.33 Aligned_cols=223 Identities=14% Similarity=0.035 Sum_probs=119.8
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCChHHHHH
Q 040136 92 LDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEE-GIICRESLFILIMKYYGRGGVPGQATR 170 (681)
Q Consensus 92 ~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 170 (681)
+....+...+...............+......+...+++..+...+...... ........+..+...+...+....+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3445555555554433321123455666666677777777777777776652 222345556666666667777777777
Q ss_pred HHHHcHhhcCCCCCHHhHHHHHH-HHHhcCCcCcHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 171 LLLDMKSVYGCQPTFRSYNVVLD-VLVAGNCHKVAPNLFYDMLSKGI--SPTVYTFGVVMKALCMVNEVDSACSLLRDMT 247 (681)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 247 (681)
.+.... .....+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+....
T Consensus 117 ~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKAL-ALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHH-cCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 777766 221111 122222222 56677777777777777654221 0122233333333455666777777766666
Q ss_pred hCCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 248 KHGCVP-NSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSD-VQTFNDVIHGLCKVNRIHEAAKLVDRMLVR 319 (681)
Q Consensus 248 ~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 319 (681)
... +. ....+..+...+...++.+.+...+....... |+ ...+..+...+...+..+.+...+......
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 553 22 24555566666666666666666666666542 22 233333333333445566666665555543
No 267
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.33 E-value=0.84 Score=41.99 Aligned_cols=50 Identities=12% Similarity=0.068 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 518 LDEITYNGLIKALCNA-----GAVDKGLGLFEEMMRKGIKPSSISCNILINGLCR 567 (681)
Q Consensus 518 ~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 567 (681)
-|..+|...+..+... +.++-....++.|.+.|++-|..+|+.|++.+-+
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK 119 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK 119 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc
Confidence 3556666666665432 3455555566677777777777777777776543
No 268
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.23 E-value=3.5 Score=34.23 Aligned_cols=74 Identities=19% Similarity=0.325 Sum_probs=47.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 492 IHAFLRRGSLHEAHKLVNDMLFRGCPL---DEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLC 566 (681)
Q Consensus 492 i~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 566 (681)
.....+.|++++|.+.|+.+... .|. ...+-..|+.+|.+.|++++|...+++.++..+.-...-|-..+.+++
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 33456778888888888887766 233 334555677788888888888888888887644333344444444443
No 269
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.17 E-value=1 Score=38.05 Aligned_cols=112 Identities=17% Similarity=0.091 Sum_probs=69.7
Q ss_pred HHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 040136 555 SISCNILING---LCRTRKANTALEFLRDMIHRGLTPDIVTYNSL-INGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNT 630 (681)
Q Consensus 555 ~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 630 (681)
..+.+.|+.. -.+.++.+++..++..+.- ..|.......+ ...+...|+|.+|+.+|+.+.+. .|.......
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kA 82 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKA 82 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHH
Confidence 3444444444 4567899999999998887 46655433322 34567889999999999998875 455555566
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 631 LISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKE 673 (681)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 673 (681)
|+..|....+=.+=..+-.++++.+ +|..+. .+++.+...
T Consensus 83 LlA~CL~~~~D~~Wr~~A~evle~~--~d~~a~-~Lv~~Ll~~ 122 (160)
T PF09613_consen 83 LLALCLYALGDPSWRRYADEVLESG--ADPDAR-ALVRALLAR 122 (160)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhcC--CChHHH-HHHHHHHHh
Confidence 6666665544333444555677655 333332 344444433
No 270
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.12 E-value=1.1 Score=42.04 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHH
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE-----GIYPDAVTYN 629 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~ 629 (681)
..++..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..++.+.+. |+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3445555566666666666666666666542 235555666666666666666666666555542 5555544443
Q ss_pred HH
Q 040136 630 TL 631 (681)
Q Consensus 630 ~l 631 (681)
.+
T Consensus 232 ~y 233 (280)
T COG3629 232 LY 233 (280)
T ss_pred HH
Confidence 33
No 271
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.08 E-value=4 Score=33.06 Aligned_cols=68 Identities=13% Similarity=0.069 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 040136 589 DIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFV 657 (681)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 657 (681)
+....+.-+..+..+|+-+.-.++...+.+.+ .+++...-.+..+|.+.|...++.++++++-++|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33445666778888899888888888887643 778888889999999999999999999999998864
No 272
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.01 E-value=7.3 Score=35.83 Aligned_cols=223 Identities=21% Similarity=0.155 Sum_probs=138.0
Q ss_pred CChhHHHHHHHHHHhcCCC-cCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCC
Q 040136 406 RRFGSALELVNAMAVKGCE-PNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTAN 484 (681)
Q Consensus 406 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 484 (681)
+....+...+......... .....+......+...+.+..+...+...... ......
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~ 94 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL----------------------ELLPNL 94 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh----------------------hhccch
Confidence 4445555555555444211 12455666666677777777777666655431 001224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHH
Q 040136 485 TVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIK-ALCNAGAVDKGLGLFEEMMRKGI--KPSSISCNIL 561 (681)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l 561 (681)
...+......+...++...+.+.+.........+ ......... .+...|+++.|...+.++..... ......+...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 173 (291)
T COG0457 95 AEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLAL 173 (291)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHh
Confidence 4556666666777777888888888777653222 222222233 67788888888888888755321 1233444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 040136 562 INGLCRTRKANTALEFLRDMIHRGLTP-DIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISWHFKEG 639 (681)
Q Consensus 562 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 639 (681)
...+...++.+.|...+.+.... ... ....+..+...+...++++.|...+...... .|+ ...+..+...+...|
T Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 250 (291)
T COG0457 174 GALLEALGRYEEALELLEKALKL-NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELG 250 (291)
T ss_pred hhHHHHhcCHHHHHHHHHHHHhh-CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcC
Confidence 44466778888888888888775 222 3566777777788888888888888888874 443 444555555555667
Q ss_pred ChhHHHHHHHHHHHC
Q 040136 640 LFDDAFLILHKGVAN 654 (681)
Q Consensus 640 ~~~~A~~~~~~~~~~ 654 (681)
.++++...+.+..+.
T Consensus 251 ~~~~~~~~~~~~~~~ 265 (291)
T COG0457 251 RYEEALEALEKALEL 265 (291)
T ss_pred CHHHHHHHHHHHHHh
Confidence 788888888888763
No 273
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.86 E-value=12 Score=37.98 Aligned_cols=163 Identities=16% Similarity=0.154 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILIN 563 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 563 (681)
|.....+++..+...-.+.-+..+-.+|...| .+...|..++.+|... ..+.-..+|+++.+..+. |.+.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 33344445555555555555555555555542 2444555555555544 334455555555554332 3333333333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC---C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 040136 564 GLCRTRKANTALEFLRDMIHRGLTP---D---IVTYNSLINGLCKMGCIQEALNLFDKLQAE-GIYPDAVTYNTLISWHF 636 (681)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~~~~~~~p---~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~ 636 (681)
.|-+ ++.+.+..+|.++..+ +-| + ...|..|... -..+.+....+..++... |..--.+.+..+..-|.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 3332 5555555555555443 111 0 1233333321 123444444444444443 22222334444445555
Q ss_pred hcCChhHHHHHHHHHHHC
Q 040136 637 KEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 637 ~~g~~~~A~~~~~~~~~~ 654 (681)
...+|++|+++++.+++.
T Consensus 217 ~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 217 ENENWTEAIRILKHILEH 234 (711)
T ss_pred cccCHHHHHHHHHHHhhh
Confidence 555555555555555543
No 274
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.68 E-value=9.9 Score=36.51 Aligned_cols=122 Identities=16% Similarity=0.162 Sum_probs=66.9
Q ss_pred CCChHHHHHHHHHhhhCC-CCCCCH-----HHHHHHHHHHHcCC-CchHHHHHHHHHHHc----C----CCCC-----HH
Q 040136 91 PLDVDTSMEIFTWAGSQE-GYCHTF-----DVYYVLIDKLGANK-EFKVIDSVLLQMKEE----G----IICR-----ES 150 (681)
Q Consensus 91 ~~~~~~al~~~~~~~~~~-~~~~~~-----~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~----~----~~~~-----~~ 150 (681)
+||.+.|..++..+.... ...|+. ..+..+.......+ +++.|...+++..+. + ..++ ..
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~ 85 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLS 85 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHH
Confidence 688899999998876544 222222 22333333444556 777777666654432 1 1111 13
Q ss_pred HHHHHHHHHHhCCChH---HHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHC
Q 040136 151 LFILIMKYYGRGGVPG---QATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSK 214 (681)
Q Consensus 151 ~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 214 (681)
++..|+.+|...+..+ +|..+++.+..++|-+ +..+-.-+..+.+.++.+.+.+.+.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4456666676666544 3444555555343322 333334455555566777777777777765
No 275
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.63 E-value=7.2 Score=37.15 Aligned_cols=117 Identities=10% Similarity=0.053 Sum_probs=65.4
Q ss_pred HhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHH----HHHHHHHhcCCh
Q 040136 196 VAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQ----TLIHALSKSNRV 271 (681)
Q Consensus 196 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~ 271 (681)
.-.|++-+|...++++++. .+.|...+.-.=.+|.-.|+.+.-...++++... ..++...|. .+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4456666666666666664 2335555555556666666666666666666543 123332222 223334456666
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040136 272 SEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDR 315 (681)
Q Consensus 272 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 315 (681)
++|.+.-++..+.+ +.|...-.++.+.+...|+..++.+...+
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 66666666666544 44555555566666666666666665544
No 276
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.59 E-value=12 Score=37.37 Aligned_cols=64 Identities=13% Similarity=0.033 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTP---DIVTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
..++..++..+.+.|.++.|...+.++...+... .....-.-+..+...|+.++|+..++....
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555566666666666655555432111 112222233444455555566555555554
No 277
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.48 E-value=0.49 Score=30.16 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=13.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040136 488 YNTLIHAFLRRGSLHEAHKLVNDMLFR 514 (681)
Q Consensus 488 ~~~li~~~~~~g~~~~A~~~~~~~~~~ 514 (681)
+..+..+|...|++++|.++++++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344445555555555555555555544
No 278
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.45 E-value=0.48 Score=30.20 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=9.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 040136 596 LINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
+...|...|++++|+++++++++
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333334444444444443333
No 279
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.18 E-value=1.8 Score=40.67 Aligned_cols=78 Identities=17% Similarity=0.260 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 040136 486 VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMR-----KGIKPSSISCNI 560 (681)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~ 560 (681)
.++..++..+...|+.+.+.+.++++.... |-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 456667777777778888888887777763 66777788888888888888888777777665 266666665554
Q ss_pred HHHH
Q 040136 561 LING 564 (681)
Q Consensus 561 l~~~ 564 (681)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
No 280
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.94 E-value=7.1 Score=33.18 Aligned_cols=51 Identities=14% Similarity=-0.096 Sum_probs=24.5
Q ss_pred HcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcH
Q 040136 125 GANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMK 176 (681)
Q Consensus 125 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 176 (681)
.+.++.+.++.++..+.-..+. ....-..-...+...|++.+|+++|+.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3455555555555555444321 22222233334445555555555555554
No 281
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.67 E-value=23 Score=38.50 Aligned_cols=21 Identities=29% Similarity=0.651 Sum_probs=11.6
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC
Q 040136 530 LCNAGAVDKGLGLFEEMMRKGIKP 553 (681)
Q Consensus 530 ~~~~g~~~~A~~~~~~~~~~~~~p 553 (681)
+...|++++|++.++++ ++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L---~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKL---DLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHT---T-S-
T ss_pred HHHcCCHHHHHHHHHhC---CCCC
Confidence 45678888887665554 4555
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.29 E-value=0.46 Score=28.68 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 627 TYNTLISWHFKEGLFDDAFLILHKGV 652 (681)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (681)
+|..|..+|.+.|++++|.+++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667777777788888877777754
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.25 E-value=0.51 Score=28.46 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 592 TYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
+|..|...|.+.|++++|++++++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 366778888888888888888888543
No 284
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.94 E-value=2.3 Score=37.40 Aligned_cols=62 Identities=11% Similarity=0.167 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPS--SISCNILINGLCRTRKANTALEFLRDMIH 583 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 583 (681)
.+..+..-|++.|+.+.|.+.|.++.+....+. ...+-.+++.....+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455555556666666666655555422222 23344555555555565555555555443
No 285
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.89 E-value=3.7 Score=36.11 Aligned_cols=98 Identities=11% Similarity=0.070 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHH
Q 040136 556 ISCNILINGLCRTRKANTALEFLRDMIHRGLTPDI--VTYNSLINGLCKMGCIQEALNLFDKLQAE---GIYPDAVTYNT 630 (681)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~ 630 (681)
..+..++..|++.|+.+.|++.+.++.+....+.. ..+-.++......|++..+.....++... |-.++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 56788999999999999999999999987555443 45677888899999999999998887765 21222222112
Q ss_pred HHHH--HHhcCChhHHHHHHHHHHH
Q 040136 631 LISW--HFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 631 l~~~--~~~~g~~~~A~~~~~~~~~ 653 (681)
...+ +...|++.+|-+.|-....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 2222 4567899998888776653
No 286
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.79 E-value=16 Score=35.20 Aligned_cols=132 Identities=14% Similarity=0.193 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cC----CHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC-
Q 040136 501 LHEAHKLVNDMLFRGCPLDEITYNGLIKALCN--AG----AVDKGLGLFEEMMRKGI---KPSSISCNILINGLCRTRK- 570 (681)
Q Consensus 501 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~- 570 (681)
+++...+++.+.+.|+.-+..+|-+....... .. ...+|..+|+.|.+... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44556778888888888777666554333322 12 35678888888888632 2344455555433 3333
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 571 ---ANTALEFLRDMIHRGLTPDIV--TYNSLINGLCKMGC--IQEALNLFDKLQAEGIYPDAVTYNTLISW 634 (681)
Q Consensus 571 ---~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 634 (681)
.+.+..+++.+.+.|+..+.. ....++..+-.... ...+.++++.+.+.|+++....|..++-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 355677777787777765432 23333322221111 45678888888888888777776655543
No 287
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.72 E-value=13 Score=33.75 Aligned_cols=25 Identities=8% Similarity=0.240 Sum_probs=17.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCC
Q 040136 400 HGLCKQRRFGSALELVNAMAVKGCE 424 (681)
Q Consensus 400 ~~~~~~~~~~~A~~~~~~~~~~~~~ 424 (681)
..-...+++.+|+++|+++....+.
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3345567888888888888766443
No 288
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.69 E-value=0.0075 Score=51.30 Aligned_cols=128 Identities=16% Similarity=0.223 Sum_probs=67.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040136 526 LIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGC 605 (681)
Q Consensus 526 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 605 (681)
++..+.+.+.......+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 34445555666666667777766554455666677777777776666666666511 11223345556666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc
Q 040136 606 IQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKEIN 675 (681)
Q Consensus 606 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 675 (681)
+++|.-++.++.... ..+..+...+++++|.+++.+ .++...|..+++.|...++
T Consensus 86 ~~~a~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 666666555433210 111112333455555532222 2346677777777666554
No 289
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.65 E-value=5.3 Score=41.25 Aligned_cols=96 Identities=19% Similarity=0.127 Sum_probs=49.2
Q ss_pred HhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 040136 336 CRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELV 415 (681)
Q Consensus 336 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~ 415 (681)
.-.|+++.|..++..+++ ...+.++..+.+.|-.++|++ + .+|... -.....+.|+++.|.++.
T Consensus 597 vmrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~-~---------s~D~d~---rFelal~lgrl~iA~~la 660 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALE-L---------STDPDQ---RFELALKLGRLDIAFDLA 660 (794)
T ss_pred hhhccccccccccccCch---hhhhhHHhHhhhccchHhhhh-c---------CCChhh---hhhhhhhcCcHHHHHHHH
Confidence 345666666665555442 234445555556666666665 2 122211 122334556666666555
Q ss_pred HHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 040136 416 NAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEM 453 (681)
Q Consensus 416 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 453 (681)
.+.. +..-|..|.++..+.+++..|.+.|...
T Consensus 661 ~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 661 VEAN------SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred Hhhc------chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 4332 3445666666666666666666655443
No 290
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.60 E-value=0.66 Score=27.39 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 627 TYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
+|..++.+|...|++++|+..++++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444455555555555555555544
No 291
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.35 E-value=2.2 Score=32.27 Aligned_cols=60 Identities=8% Similarity=0.140 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 572 NTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLI 632 (681)
Q Consensus 572 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 632 (681)
-++.+-++.+...++.|++.+..+-+++|.+.+|+..|+++|+....+ +..+...|..++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~l 83 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHH
Confidence 345555666666667777777777777777777777777777766643 222334454444
No 292
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.28 E-value=0.66 Score=27.30 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 628 YNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
+..+..++...|++++|++.++++++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44455555555555555555555554
No 293
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.91 E-value=12 Score=32.28 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 040136 258 YQTLIHALSKSNRVSEALMLLEE 280 (681)
Q Consensus 258 ~~~li~~~~~~~~~~~A~~~~~~ 280 (681)
+..+++.+...|++-+|++..+.
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH
Confidence 34444555555555555555544
No 294
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.89 E-value=59 Score=40.21 Aligned_cols=149 Identities=14% Similarity=0.112 Sum_probs=94.1
Q ss_pred HHHHHHHcCCCchHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH-cHhhcCCCCCHHhHHHHHH
Q 040136 119 VLIDKLGANKEFKVIDSVLLQM----KEEGIICRESLFILIMKYYGRGGVPGQATRLLLD-MKSVYGCQPTFRSYNVVLD 193 (681)
Q Consensus 119 ~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~~ll~ 193 (681)
.+..+-.+.+.+..|...+++- ++.. .....+..+...|+..+++|....+... .. .|+.. .-|-
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~---~qil 1457 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY---QQIL 1457 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH---HHHH
Confidence 4445666788888999988884 2221 1233444555599999999988887763 32 23322 2334
Q ss_pred HHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHH-HHHHHhcCChh
Q 040136 194 VLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTL-IHALSKSNRVS 272 (681)
Q Consensus 194 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~ 272 (681)
.....|++..|...|+++.+.+ ++...+++.+++.....|.++.+....+-....- .+....++++ +.+-.+.++++
T Consensus 1458 ~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1458 EHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred HHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchh
Confidence 4567789999999999999875 2236678877777777787877777665554432 2333333332 34446666766
Q ss_pred HHHHHHH
Q 040136 273 EALMLLE 279 (681)
Q Consensus 273 ~A~~~~~ 279 (681)
.....+.
T Consensus 1536 ~~e~~l~ 1542 (2382)
T KOG0890|consen 1536 LLESYLS 1542 (2382)
T ss_pred hhhhhhh
Confidence 6655544
No 295
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=89.74 E-value=32 Score=36.89 Aligned_cols=120 Identities=15% Similarity=0.099 Sum_probs=67.8
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 040136 530 LCNAGAVDKGLGLFEEMMRKGIKPSS--ISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQ 607 (681)
Q Consensus 530 ~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 607 (681)
+.--|+-++|..+.++|.... .|-. .-.-.+..+|+-+|+-....+++.-.... ...|+.-...+.-++.-..+.+
T Consensus 511 L~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~ 588 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPE 588 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChh
Confidence 444566667777777776642 2211 11234556777777776666666655442 3334444444444556666777
Q ss_pred HHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 608 EALNLFDKLQAEGIYPDAVTY--NTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 608 ~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
....+.+-+.+. ..|.+..= -+|.-+|.-.|. .+|..+++.|..
T Consensus 589 ~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 589 QLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 777777666664 34444322 233344444454 678888888764
No 296
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.59 E-value=3.5 Score=34.33 Aligned_cols=101 Identities=17% Similarity=0.139 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 040136 554 SSISCNILINGL---CRTRKANTALEFLRDMIHRGLTPDI---VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVT 627 (681)
Q Consensus 554 ~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 627 (681)
+....+.|+... ...++.+++..++..|.- +.|+. .++.. ..+...|+|++|+.+|+++.+. .+....
T Consensus 6 s~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~--~~~~p~ 79 (153)
T TIGR02561 6 SNRLLGGLIEVLMYALRSADPYDAQAMLDALRV--LRPNLKELDMFDG--WLLIARGNYDEAARILRELLSS--AGAPPY 79 (153)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhcc--CCCchH
Confidence 344445555443 457889999999988876 45554 34433 3456889999999999999885 333333
Q ss_pred HHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCHH
Q 040136 628 YNTLISWHFKE-GLFDDAFLILHKGVANGFVPNDA 661 (681)
Q Consensus 628 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~g~~~~~~ 661 (681)
-..|...|.+. |+ .+=..+-.++++.|-.|+..
T Consensus 80 ~kAL~A~CL~al~D-p~Wr~~A~~~le~~~~~~a~ 113 (153)
T TIGR02561 80 GKALLALCLNAKGD-AEWHVHADEVLARDADADAV 113 (153)
T ss_pred HHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCHhHH
Confidence 33444444443 33 22233444555655444443
No 297
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.46 E-value=0.93 Score=26.74 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 592 TYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
+|..+..++...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455556666666666666666666665
No 298
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.06 E-value=6.6 Score=30.17 Aligned_cols=60 Identities=8% Similarity=0.148 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 573 TALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLIS 633 (681)
Q Consensus 573 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 633 (681)
+..+-++.+...++.|++.+..+.+.+|.+.+++..|+++|+....+ +.+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 44555566666677777777777778888888888888887777765 2222225555543
No 299
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.67 E-value=1.1 Score=26.27 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 592 TYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
.|..+..++...|++++|++.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666777777777777777666
No 300
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.57 E-value=0.59 Score=27.77 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhcCChhHHH
Q 040136 625 AVTYNTLISWHFKEGLFDDAF 645 (681)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~ 645 (681)
...|..+...|...|++++|+
T Consensus 13 ~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhhc
Confidence 455556666666666665554
No 301
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.47 E-value=29 Score=34.69 Aligned_cols=65 Identities=17% Similarity=0.058 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 391 DVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEP---NIVTYTILVDGFCKEGQLEKANIIINEMLA 455 (681)
Q Consensus 391 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 455 (681)
...++..++..+.+.|.++.|...+..+...+... .+.+...-+...-..|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456666777777777777777777766543111 233334445555666777777777766665
No 302
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.13 E-value=14 Score=32.52 Aligned_cols=96 Identities=21% Similarity=0.191 Sum_probs=62.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 040136 526 LIKALCNAGAVDKGLGLFEEMMRKGIKPS----SISCNILINGLCRTRKANTALEFLRDMIHRGLTPD-IVTYNSLINGL 600 (681)
Q Consensus 526 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 600 (681)
=.+-+.+.|++++|..-|..++..-.... ...|..-..++.+.+.++.|++-..+.++.+ |+ ......-..+|
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeay 178 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAY 178 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHH
Confidence 35556778888888888888887522111 2345555667777888888888877777742 32 22333334567
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH
Q 040136 601 CKMGCIQEALNLFDKLQAEGIYPDA 625 (681)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~~~~~p~~ 625 (681)
.+...+++|++=++++.+. .|..
T Consensus 179 ek~ek~eealeDyKki~E~--dPs~ 201 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILES--DPSR 201 (271)
T ss_pred HhhhhHHHHHHHHHHHHHh--Ccch
Confidence 7777888888888888874 5543
No 303
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.03 E-value=3.1 Score=35.87 Aligned_cols=112 Identities=13% Similarity=0.120 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHC-----CCCCCH-HHHHHHHHHHHhcC--
Q 040136 536 VDKGLGLFEEMMRKGIKPSSISCNILINGL---CRTRKANTALEFLRDMIHR-----GLTPDI-VTYNSLINGLCKMG-- 604 (681)
Q Consensus 536 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~-----~~~p~~-~~~~~l~~~~~~~g-- 604 (681)
++.|.+.++.....++ .|...++.-..++ .+.....++.+++++.+++ .+.|+. .++..+..+|...+
T Consensus 7 FE~ark~aea~y~~nP-~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNP-LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-T-T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 5566666666555432 3555544444444 3445556787888876653 355654 66667777776443
Q ss_pred --C-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 040136 605 --C-------IQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGF 656 (681)
Q Consensus 605 --~-------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 656 (681)
+ +++|...|+++.+ ..|+...|+.-+... ++|-++..++.+++.
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred cCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHHh
Confidence 2 4556666666666 488888887766665 346777777777653
No 304
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=88.02 E-value=33 Score=34.96 Aligned_cols=99 Identities=9% Similarity=0.087 Sum_probs=76.0
Q ss_pred CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHC-CCCCCHHH
Q 040136 552 KPSSISC-NILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLC--KMGCIQEALNLFDKLQAE-GIYPDAVT 627 (681)
Q Consensus 552 ~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~-~~~p~~~~ 627 (681)
.|+..++ +.+++.+.+.|-.++|...+..+... .+|+...|..+++.-. .+.+..-+..+++.|... | -|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 4455444 56778888899999999999999886 4667788888776432 333478889999998876 5 67778
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 628 YNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
|-..+.--...|+.+.+-.++.++.+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 87777777788999888888888776
No 305
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.87 E-value=7.5 Score=36.73 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=67.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 040136 515 GCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK---GIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIV 591 (681)
Q Consensus 515 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 591 (681)
|.+....+...++..-....+++.++..+-++... -..|+...+ ..++.+ -.-++++++.++..-++.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 45555566666666656667788888777776553 111222222 222222 3346678888888888888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 592 TYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
+++.+++.+.+.+++.+|..+.-.|+..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888888776666654
No 306
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.80 E-value=3 Score=39.66 Aligned_cols=94 Identities=12% Similarity=0.087 Sum_probs=59.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040136 526 LIKALCNAGAVDKGLGLFEEMMRKGIKP-SSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMG 604 (681)
Q Consensus 526 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 604 (681)
-.+-|.+.|.+++|+..|...+.. .| +.+++..-..+|.+..++..|..-.+..+..+ ..-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 355677888888888888777764 34 77777777778888887777776666665431 111233444444444556
Q ss_pred CHHHHHHHHHHHHHCCCCCC
Q 040136 605 CIQEALNLFDKLQAEGIYPD 624 (681)
Q Consensus 605 ~~~~A~~~~~~~~~~~~~p~ 624 (681)
...+|.+=.+..++ ++|+
T Consensus 180 ~~~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA--LEPK 197 (536)
T ss_pred hHHHHHHhHHHHHh--hCcc
Confidence 66666666666666 4666
No 307
>PRK11619 lytic murein transglycosylase; Provisional
Probab=87.46 E-value=48 Score=36.19 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=15.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 040136 490 TLIHAFLRRGSLHEAHKLVNDML 512 (681)
Q Consensus 490 ~li~~~~~~g~~~~A~~~~~~~~ 512 (681)
=+..++...|+.++|...|+.+.
T Consensus 351 W~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 351 WQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHh
Confidence 34555556788888888877764
No 308
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.42 E-value=20 Score=31.63 Aligned_cols=89 Identities=18% Similarity=0.151 Sum_probs=40.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 040136 529 ALCNAGAVDKGLGLFEEMMRKGIKPS--SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCI 606 (681)
Q Consensus 529 ~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 606 (681)
.+..++++++|...++..+.....-+ ..+--.|.+.....|.+++|+..++...+.+. .......-.+.+...|+-
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k 175 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCch
Confidence 44555666666666555554311100 11112234445555555555555555443221 111122234445555555
Q ss_pred HHHHHHHHHHHHC
Q 040136 607 QEALNLFDKLQAE 619 (681)
Q Consensus 607 ~~A~~~~~~~~~~ 619 (681)
++|+.-|++.++.
T Consensus 176 ~~Ar~ay~kAl~~ 188 (207)
T COG2976 176 QEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHHHHHc
Confidence 5555555555554
No 309
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.39 E-value=45 Score=35.78 Aligned_cols=147 Identities=10% Similarity=-0.050 Sum_probs=78.0
Q ss_pred hHHHHHHHHHcHhhcCCCCCHHhHHHHH----HH-HHhcCCcCcHHHHHHHHHH-------CCCCCChhhHHHHHHHHHh
Q 040136 165 PGQATRLLLDMKSVYGCQPTFRSYNVVL----DV-LVAGNCHKVAPNLFYDMLS-------KGISPTVYTFGVVMKALCM 232 (681)
Q Consensus 165 ~~~A~~~~~~~~~~~~~~~~~~~~~~ll----~~-~~~~~~~~~A~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~ 232 (681)
...|..+++... ..| +...-..+. .+ +....+.+.|+..|+...+ .| +......+..+|.+
T Consensus 228 ~~~a~~~~~~~a-~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAA-KLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHH-hhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 346777777666 322 222222222 22 3345677778888877766 44 33345555666655
Q ss_pred cC-----ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcC
Q 040136 233 VN-----EVDSACSLLRDMTKHGCVPNSVVYQTLIHALSK-SNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLC--KVN 304 (681)
Q Consensus 233 ~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~--~~~ 304 (681)
.. +.+.|..++....+.| .|+....-..+..... ..+...|.++|......|. ++...+..+..... -..
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVER 378 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCC
Confidence 32 5566888888777776 3333322222221111 2346678888888777762 22222222221111 234
Q ss_pred CHHHHHHHHHHHHHCC
Q 040136 305 RIHEAAKLVDRMLVRG 320 (681)
Q Consensus 305 ~~~~a~~~~~~~~~~~ 320 (681)
+.+.|..++.+..+.|
T Consensus 379 ~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG 394 (552)
T ss_pred CHHHHHHHHHHHHHcc
Confidence 6777777777777776
No 310
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.97 E-value=0.86 Score=27.07 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=10.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHH
Q 040136 518 LDEITYNGLIKALCNAGAVDKG 539 (681)
Q Consensus 518 ~~~~~~~~l~~~~~~~g~~~~A 539 (681)
-+..+|+.+...|...|++++|
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhh
Confidence 3444444444444444444444
No 311
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.84 E-value=48 Score=35.56 Aligned_cols=77 Identities=12% Similarity=0.016 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCH
Q 040136 500 SLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNA----GAVDKGLGLFEEMMRKGIKPSSISCNILINGLC----RTRKA 571 (681)
Q Consensus 500 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~ 571 (681)
+.+.+...+......| +......|.+.|..- .+++.|...+......+ ....| .+...+- -.. +
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~-nlg~~~e~g~g~~~-~ 525 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALF-NLGYMHEHGEGIKV-L 525 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHh-hhhhHHhcCcCcch-h
Confidence 3455555555555444 444445555544432 24666666666666554 22222 2222221 122 5
Q ss_pred HHHHHHHHHHHHC
Q 040136 572 NTALEFLRDMIHR 584 (681)
Q Consensus 572 ~~A~~~~~~~~~~ 584 (681)
..|.+++++..+.
T Consensus 526 ~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 526 HLAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHHhc
Confidence 6677777776664
No 312
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=86.52 E-value=24 Score=31.65 Aligned_cols=63 Identities=17% Similarity=0.042 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcH
Q 040136 113 TFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMK 176 (681)
Q Consensus 113 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 176 (681)
-+.+|+.+.-.+...|+++.|.+.|+...+.++.-+-...+.-+..| --|++.-|.+-|...-
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fY 160 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFY 160 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHH
Confidence 34556666666667777777777777777776543333333333333 4467777766666555
No 313
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=86.45 E-value=24 Score=31.63 Aligned_cols=29 Identities=14% Similarity=-0.008 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 040136 393 FTFNILIHGLCKQRRFGSALELVNAMAVK 421 (681)
Q Consensus 393 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 421 (681)
.||--+.+.+...|+.++|..+|+-....
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 35556666677777777777777666543
No 314
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.35 E-value=0.8 Score=38.76 Aligned_cols=83 Identities=18% Similarity=0.150 Sum_probs=48.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040136 226 VMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNR 305 (681)
Q Consensus 226 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 305 (681)
++..+.+.+..+.+..+++.+...+...+....+.++..|++.++.++..++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4555666667777777777777655445566667777777777666666666651 111333345555566666
Q ss_pred HHHHHHHHHH
Q 040136 306 IHEAAKLVDR 315 (681)
Q Consensus 306 ~~~a~~~~~~ 315 (681)
++++.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 6665555544
No 315
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.21 E-value=34 Score=33.11 Aligned_cols=135 Identities=16% Similarity=0.180 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCCC---CCcccHHHHHHHHHhcCCHH
Q 040136 272 SEALMLLEEMILMGCTSDVQTFNDVIHGLCK--VN----RIHEAAKLVDRMLVRGFT---PDDITYGVLMHGLCRTGRVD 342 (681)
Q Consensus 272 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 342 (681)
++...+++.|.+.|...+..+|-+....... .. ....|..+++.|.+...- ++...+..++.. ...+.+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445666777777766666555543322222 12 245677788888775422 334444444432 334444
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC--hhHHHHHHHHH
Q 040136 343 EARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVF--TFNILIHGLCKQRR--FGSALELVNAM 418 (681)
Q Consensus 343 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~--~~~A~~~~~~~ 418 (681)
.-.+..+ . +|+.+...|...+.. ..+.++........ ...+..+++.+
T Consensus 157 ~l~~~~E---------------------------~-~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l 208 (297)
T PF13170_consen 157 ELAERME---------------------------Q-CYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL 208 (297)
T ss_pred HHHHHHH---------------------------H-HHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 3333222 2 677777766655432 23333322222111 45788888999
Q ss_pred HhcCCCcCHhhHHHHHHH
Q 040136 419 AVKGCEPNIVTYTILVDG 436 (681)
Q Consensus 419 ~~~~~~~~~~~~~~ll~~ 436 (681)
.+.|++.....|..+.-.
T Consensus 209 ~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 209 KKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHcCCccccccccHHHHH
Confidence 999988877776665543
No 316
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.58 E-value=6.6 Score=29.83 Aligned_cols=47 Identities=9% Similarity=0.066 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040136 501 LHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMM 547 (681)
Q Consensus 501 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 547 (681)
.-++.+-++.+.....-|++.+..+.+.+|.+.+++..|.++|+.+.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444445554444455555555555555555555555555555444
No 317
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.25 E-value=3 Score=39.20 Aligned_cols=48 Identities=17% Similarity=0.298 Sum_probs=23.6
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 235 EVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMI 282 (681)
Q Consensus 235 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 282 (681)
++++++.++..=+..|+-||.++++.+|+.+.+.+++.+|.++.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344444444444444555555555555555555555555544444444
No 318
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=85.08 E-value=53 Score=34.40 Aligned_cols=130 Identities=8% Similarity=0.014 Sum_probs=88.7
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHH
Q 040136 117 YYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLV 196 (681)
Q Consensus 117 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 196 (681)
+..++.---...+.+.+..++..+...-+ .-...|......-.+.|..+.+.++|++-. .+++.....|...+..+.
T Consensus 48 wt~li~~~~~~~~~~~~r~~y~~fL~kyP-l~~gyW~kfA~~E~klg~~~~s~~Vfergv--~aip~SvdlW~~Y~~f~~ 124 (577)
T KOG1258|consen 48 WTTLIQENDSIEDVDALREVYDIFLSKYP-LCYGYWKKFADYEYKLGNAENSVKVFERGV--QAIPLSVDLWLSYLAFLK 124 (577)
T ss_pred hHHHHhccCchhHHHHHHHHHHHHHhhCc-cHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHh
Confidence 33344333333334555566666665442 334456666777778899999999999988 466777777877776655
Q ss_pred -hcCCcCcHHHHHHHHHHC-CCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 040136 197 -AGNCHKVAPNLFYDMLSK-GIS-PTVYTFGVVMKALCMVNEVDSACSLLRDMTKH 249 (681)
Q Consensus 197 -~~~~~~~A~~~~~~m~~~-~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 249 (681)
..|+.+.....|++.... |.. -....|..++..-..++++.....+++.+++.
T Consensus 125 n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 125 NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 456777788888887765 321 24456777888778888999999999999875
No 319
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.62 E-value=14 Score=38.30 Aligned_cols=148 Identities=17% Similarity=0.183 Sum_probs=79.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040136 233 VNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKL 312 (681)
Q Consensus 233 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 312 (681)
.|+++.|..++..+.+ ...+.+++.+-++|-.++|+++ .+|.... .....+.|+++.|.++
T Consensus 599 rrd~~~a~~vLp~I~k-------~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~l 659 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPK-------EIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDL 659 (794)
T ss_pred hccccccccccccCch-------hhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHH
Confidence 4555555544443331 2344556666666666666553 2222211 1223466777777776
Q ss_pred HHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH
Q 040136 313 VDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDV 392 (681)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 392 (681)
..+.. +..-|..|.++....|++..|.+.|.+... |..|+-.+...|+.+.... +-....+.|..
T Consensus 660 a~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l~~-la~~~~~~g~~--- 724 (794)
T KOG0276|consen 660 AVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEGLAV-LASLAKKQGKN--- 724 (794)
T ss_pred HHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHHHH-HHHHHHhhccc---
Confidence 65542 445677777777777777777777766443 4445555555565554444 33333333322
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHH
Q 040136 393 FTFNILIHGLCKQRRFGSALELVNA 417 (681)
Q Consensus 393 ~~~~~ll~~~~~~~~~~~A~~~~~~ 417 (681)
|...-+|...|+++++.+++..
T Consensus 725 ---N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 725 ---NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ---chHHHHHHHcCCHHHHHHHHHh
Confidence 2233355566777777666644
No 320
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=84.21 E-value=21 Score=31.06 Aligned_cols=111 Identities=18% Similarity=0.215 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHC-----CCCCCH-HHHHHHHHHHHhcC--
Q 040136 501 LHEAHKLVNDMLFRGCPLDEITYNGLIKAL---CNAGAVDKGLGLFEEMMRK-----GIKPSS-ISCNILINGLCRTR-- 569 (681)
Q Consensus 501 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~-----~~~p~~-~~~~~l~~~~~~~g-- 569 (681)
++.|.+.++.....+ |.|...++.-..++ .+.....++..++++.+++ .+.|+. .++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 566777776655553 66666555444444 3444444555555544432 245654 77888888887654
Q ss_pred --C-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040136 570 --K-------ANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEG 620 (681)
Q Consensus 570 --~-------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 620 (681)
+ +++|.+.|++... ..|+..+|+.-+... .+|-++..++.+.+
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred cCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 2 4556666666665 578988988766532 46777777777764
No 321
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.97 E-value=5.7 Score=30.52 Aligned_cols=46 Identities=9% Similarity=0.093 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040136 503 EAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMR 548 (681)
Q Consensus 503 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 548 (681)
+..+-++.+.....-|++.+..+.+.+|.+.+++..|+++|+.+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444444445555555555555555555555555554444
No 322
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.76 E-value=37 Score=31.49 Aligned_cols=222 Identities=14% Similarity=0.102 Sum_probs=105.8
Q ss_pred CCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCc---ccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHH
Q 040136 285 GCTSDVQTFNDVIHGL-CKVNRIHEAAKLVDRMLVRGFTPDD---ITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLN 360 (681)
Q Consensus 285 ~~~~~~~~~~~li~~~-~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 360 (681)
+..||+..=|..-.+- .+...+++|+.-|.+.++....... .....++..+.+.|++++....+.++..
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT------- 93 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT------- 93 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH-------
Confidence 3456654433322111 2345678888888877764222111 2334566777777777777766665432
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-----CCCcCHhhHHHHHH
Q 040136 361 TVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVK-----GCEPNIVTYTILVD 435 (681)
Q Consensus 361 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~ll~ 435 (681)
.|.. .... .-+..+.+.++.......+.+.....++.-++. +-..--.+-..|..
T Consensus 94 -YIkS-----------------AVTr--NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgk 153 (440)
T KOG1464|consen 94 -YIKS-----------------AVTR--NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGK 153 (440)
T ss_pred -HHHH-----------------HHhc--cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhh
Confidence 1111 1111 112334445555444444444333333322211 00111123345666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 040136 436 GFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRG 515 (681)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 515 (681)
.|...+.+.+..++++++....-.-+...+... |.. -...|..-|..|....+-..-..+|++.+...
T Consensus 154 l~fd~~e~~kl~KIlkqLh~SCq~edGedD~kK-----------GtQ-LLEiYAlEIQmYT~qKnNKkLK~lYeqalhiK 221 (440)
T KOG1464|consen 154 LYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKK-----------GTQ-LLEIYALEIQMYTEQKNNKKLKALYEQALHIK 221 (440)
T ss_pred hheeHHHHHHHHHHHHHHHHHhccccCchhhhc-----------cch-hhhhHhhHhhhhhhhcccHHHHHHHHHHHHhh
Confidence 777777788877888777664222111111111 111 22455556666777777666667777655432
Q ss_pred -CCCCHHHHHHHHH-----HHHHcCCHHHHHHHHHHH
Q 040136 516 -CPLDEITYNGLIK-----ALCNAGAVDKGLGLFEEM 546 (681)
Q Consensus 516 -~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~ 546 (681)
.-|.+.... ++. ...+.|++++|..-|-++
T Consensus 222 SAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 222 SAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred ccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHH
Confidence 123333322 232 234567777765544333
No 323
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.75 E-value=1.8 Score=25.39 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 628 YNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
|..+...|...|++++|...|++.++
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444555555555555555555544
No 324
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.72 E-value=12 Score=33.29 Aligned_cols=72 Identities=11% Similarity=-0.053 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHH
Q 040136 572 NTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE---GIYPDAVTYNTLISWHFKEGLFDDA 644 (681)
Q Consensus 572 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A 644 (681)
+.|.+.|-++...+.--++.....|...|. ..|.++|+.++.+..+. +-.+|+..+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 334444444444333333333333333222 34445555554444443 1133444555555555555555444
No 325
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.62 E-value=2.7 Score=26.01 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 626 VTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
.+++.|...|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566677777777777777777777664
No 326
>PRK09687 putative lyase; Provisional
Probab=83.54 E-value=43 Score=32.12 Aligned_cols=15 Identities=13% Similarity=-0.243 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHcCC
Q 040136 114 FDVYYVLIDKLGANK 128 (681)
Q Consensus 114 ~~~~~~l~~~~~~~g 128 (681)
..+....+..+...|
T Consensus 37 ~~vR~~A~~aL~~~~ 51 (280)
T PRK09687 37 SLKRISSIRVLQLRG 51 (280)
T ss_pred HHHHHHHHHHHHhcC
Confidence 333444444444444
No 327
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=82.97 E-value=82 Score=34.89 Aligned_cols=221 Identities=13% Similarity=0.028 Sum_probs=116.3
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChh-------hHHHHHH-HHHhcCChhHHHHHHHHHHHCC----CCCCHHHHHHHHH
Q 040136 231 CMVNEVDSACSLLRDMTKHGCVPNSV-------VYQTLIH-ALSKSNRVSEALMLLEEMILMG----CTSDVQTFNDVIH 298 (681)
Q Consensus 231 ~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~-~~~~~~~~~~A~~~~~~m~~~~----~~~~~~~~~~li~ 298 (681)
.-..++++|..++.++...-..|+.. .++.+-. +....|+++.|.++.+.....= -.+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34678899998888876542222221 3333322 2334788899998888877531 2234555666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH-----HHHHHhcCCHH--HHHHHHhhcCC-----C-----ChHHHHH
Q 040136 299 GLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVL-----MHGLCRTGRVD--EARALLNKIPS-----A-----NVVLLNT 361 (681)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~g~~~--~A~~~~~~~~~-----~-----~~~~~~~ 361 (681)
+..-.|++++|..+.....+..-.-++..+... ...+...|+.. +....|..+.. . -..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 777889999999888877665333344433322 23345566332 22233332222 1 1223444
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHhcCCCcC----HhhHHHH-
Q 040136 362 VINGYVIS-GRFDEAKAIFYDSMLSVGCIPDVFT--FNILIHGLCKQRRFGSALELVNAMAVKGCEPN----IVTYTIL- 433 (681)
Q Consensus 362 l~~~~~~~-g~~~~a~~~~~~~~~~~~~~p~~~~--~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l- 433 (681)
+..++.+. +...++.. -++.-......|-... +..++......|+.++|...++++......+. ...-...
T Consensus 586 ll~~~~r~~~~~~ear~-~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 586 LLRAWLRLDLAEAEARL-GIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHhhhhHHhhh-cchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 45555441 12222222 1221111111111111 22567777889999999999988876533332 1111112
Q ss_pred -HHHHHhcCCHHHHHHHHHH
Q 040136 434 -VDGFCKEGQLEKANIIINE 452 (681)
Q Consensus 434 -l~~~~~~g~~~~A~~~~~~ 452 (681)
+......|+...+.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 2234456777777655544
No 328
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.96 E-value=27 Score=29.31 Aligned_cols=50 Identities=12% Similarity=-0.025 Sum_probs=23.2
Q ss_pred cCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcH
Q 040136 126 ANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMK 176 (681)
Q Consensus 126 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 176 (681)
..++..+++.+++.+.-..+. ....-..-...+...|++++|.++|+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELL 71 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhh
Confidence 355555555555555443321 22222223333445555555555555555
No 329
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.91 E-value=3.3 Score=25.60 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 591 VTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4667777778888888888888777765
No 330
>PRK09687 putative lyase; Provisional
Probab=82.77 E-value=46 Score=31.91 Aligned_cols=171 Identities=13% Similarity=0.052 Sum_probs=104.1
Q ss_pred CCHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 040136 483 ANTVTYNTLIHAFLRRGSL-----HEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSIS 557 (681)
Q Consensus 483 ~~~~~~~~li~~~~~~g~~-----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 557 (681)
++..+-...+.++...+.. ..+...+..... .++..+-...+.++.+.++ +++...+-.+++. ++...
T Consensus 103 ~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~V 175 (280)
T PRK09687 103 KSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDV 175 (280)
T ss_pred CCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHH
Confidence 3555555555555544321 223333333332 2366666777777777775 5667777776663 34444
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 558 CNILINGLCRTR-KANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHF 636 (681)
Q Consensus 558 ~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 636 (681)
-...+.++...+ ....+...+..++. .++..+-...+.++.+.|+ ..|+..+-+..+.+ + .....+.++.
T Consensus 176 R~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg 246 (280)
T PRK09687 176 RNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAG 246 (280)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHH
Confidence 444555555543 24567777777764 3566666777778888877 56776666666542 2 2346777888
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 637 KEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVK 672 (681)
Q Consensus 637 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 672 (681)
..|.. +|...+.++.+. .||..+....+.+|.+
T Consensus 247 ~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 247 ELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred hcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 88884 688888888863 4677777777776643
No 331
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.52 E-value=28 Score=35.09 Aligned_cols=98 Identities=10% Similarity=0.101 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 483 ANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILI 562 (681)
Q Consensus 483 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 562 (681)
|+.....+. .+...|.++.+...+...... +.....+..+++....+.|++++|...-..|+...++ +......-.
T Consensus 323 p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa 398 (831)
T PRK15180 323 PVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAA 398 (831)
T ss_pred chhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-Chhheeeec
Confidence 444444433 356789999999988776654 3445567888899999999999999999999887665 444444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 040136 563 NGLCRTRKANTALEFLRDMIHR 584 (681)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~~ 584 (681)
......|-++++...|++...-
T Consensus 399 ~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 399 GSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred ccHHHHhHHHHHHHHHHHHhcc
Confidence 4455667889999999998764
No 332
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=82.38 E-value=10 Score=36.18 Aligned_cols=97 Identities=9% Similarity=0.004 Sum_probs=71.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040136 490 TLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTR 569 (681)
Q Consensus 490 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 569 (681)
.-.+-|.+.|.+++|+..|...+.. .|.|+.++..-..+|.+...+..|+.-...++..+- .-...|..-+.+-...|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~-~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAV-YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhcc-CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHh
Confidence 3467899999999999999988876 255888888888899999999988887777776421 11234555555555567
Q ss_pred CHHHHHHHHHHHHHCCCCCCH
Q 040136 570 KANTALEFLRDMIHRGLTPDI 590 (681)
Q Consensus 570 ~~~~A~~~~~~~~~~~~~p~~ 590 (681)
+..+|.+-++..++ +.|+.
T Consensus 180 ~~~EAKkD~E~vL~--LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA--LEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHh--hCccc
Confidence 77777777777776 46663
No 333
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.05 E-value=46 Score=31.41 Aligned_cols=71 Identities=13% Similarity=0.006 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCCCCHHHH
Q 040136 592 TYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVAN-----GFVPNDATW 663 (681)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~~~~~~~ 663 (681)
+++.....|..+|.+.+|.++-+..+..+ +.+...+-.|+..+...|+--+|.+-++++.+. |+..|....
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 34556677889999999999999988853 556777888889999999988888777776653 666655443
No 334
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.61 E-value=37 Score=30.00 Aligned_cols=91 Identities=13% Similarity=0.080 Sum_probs=69.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 560 ILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYN-----SLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISW 634 (681)
Q Consensus 560 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 634 (681)
.+...+...+++++|...++..+.. |....+. .|.......|.+++|...++.....+. .......-.++
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDi 168 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDI 168 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhH
Confidence 3456678899999999999988864 2222333 455677899999999999988776432 23445566788
Q ss_pred HHhcCChhHHHHHHHHHHHCC
Q 040136 635 HFKEGLFDDAFLILHKGVANG 655 (681)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~~~g 655 (681)
+...|+.++|+.-|++.++.+
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHcCchHHHHHHHHHHHHcc
Confidence 999999999999999999875
No 335
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=81.56 E-value=2.7 Score=24.62 Aligned_cols=27 Identities=30% Similarity=0.376 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 592 TYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
+|..+...+...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666667777777777766665
No 336
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.22 E-value=1e+02 Score=34.73 Aligned_cols=115 Identities=13% Similarity=0.113 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhcCCh--hHHHHHHHHHHHCCCCCCHHHHH---
Q 040136 223 FGVVMKALCMVNEVDSACSLLRDMTKHGC---VPNSVVYQTLIHALSKSNRV--SEALMLLEEMILMGCTSDVQTFN--- 294 (681)
Q Consensus 223 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~--~~A~~~~~~m~~~~~~~~~~~~~--- 294 (681)
|..|+..|...|+.++|.+++.+.....- .--...+..+++-+.+.+.. +-+++.-....+....-....+.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 66677777777777777777777765320 00111222344444444433 33443333333221000000000
Q ss_pred ---------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 040136 295 ---------DVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCR 337 (681)
Q Consensus 295 ---------~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (681)
..+-.+.+....+-++.+++.+....-.++....+.++..|+.
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1223345555666666677666655444455555666655543
No 337
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=80.78 E-value=60 Score=31.92 Aligned_cols=136 Identities=14% Similarity=0.089 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHHHhc------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 040136 484 NTVTYNTLIHAFLRR------------GSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGI 551 (681)
Q Consensus 484 ~~~~~~~li~~~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 551 (681)
|..+|..++..--.. .-.+.-+.+++++++.+ +.+...+..++..+.+..+.++..+.|++++....
T Consensus 18 di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~ 96 (321)
T PF08424_consen 18 DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP 96 (321)
T ss_pred cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC
Confidence 677777776532221 11455678888888884 67888888889999999899999999999998743
Q ss_pred CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHC------CC------CCC--HHH---HHHHHHHHHhcCCHHHHHH
Q 040136 552 KPSSISCNILINGLCR---TRKANTALEFLRDMIHR------GL------TPD--IVT---YNSLINGLCKMGCIQEALN 611 (681)
Q Consensus 552 ~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~------~~------~p~--~~~---~~~l~~~~~~~g~~~~A~~ 611 (681)
. +...|...++.... .-.++....+|.+.+.. +. .++ ... +..+...+..+|-.+.|+.
T Consensus 97 ~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava 175 (321)
T PF08424_consen 97 G-SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVA 175 (321)
T ss_pred C-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHH
Confidence 2 67777777766544 23456666666554432 11 011 112 2223334458899999999
Q ss_pred HHHHHHHCCC
Q 040136 612 LFDKLQAEGI 621 (681)
Q Consensus 612 ~~~~~~~~~~ 621 (681)
+++.+++.++
T Consensus 176 ~~Qa~lE~n~ 185 (321)
T PF08424_consen 176 LWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHc
Confidence 9999999764
No 338
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.78 E-value=13 Score=33.31 Aligned_cols=76 Identities=24% Similarity=0.217 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHH
Q 040136 488 YNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKG--IKPSSISCNILING 564 (681)
Q Consensus 488 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~ 564 (681)
.+..+..+.+.++.++++...++-++.. |.|......++..||-.|++++|..-++-.-+.. ..+...+|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445566778888999999888877763 6677788888899999999999988887766542 23345666666654
No 339
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=80.74 E-value=92 Score=34.02 Aligned_cols=187 Identities=12% Similarity=0.087 Sum_probs=101.7
Q ss_pred HHHHHHHHHhhhCCCCCCCH--HHHHHHHHHHH-cCCCchHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhCCChH
Q 040136 95 DTSMEIFTWAGSQEGYCHTF--DVYYVLIDKLG-ANKEFKVIDSVLLQMKEEGIICRE-----SLFILIMKYYGRGGVPG 166 (681)
Q Consensus 95 ~~al~~~~~~~~~~~~~~~~--~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~ 166 (681)
..|++.++.+.++...+|.. .++..++.++. ...+++.|+..+++.......++- .....+++.|.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 35677777766555444433 34555666666 667888888888876553321111 12235667776666655
Q ss_pred HHHHHHHHcHhhcCC---CCCHHhHHHH-HHHHHhcCCcCcHHHHHHHHHHCC---CCCChhhHHHHHHHHH--hcCChh
Q 040136 167 QATRLLLDMKSVYGC---QPTFRSYNVV-LDVLVAGNCHKVAPNLFYDMLSKG---ISPTVYTFGVVMKALC--MVNEVD 237 (681)
Q Consensus 167 ~A~~~~~~~~~~~~~---~~~~~~~~~l-l~~~~~~~~~~~A~~~~~~m~~~~---~~p~~~~~~~ll~~~~--~~g~~~ 237 (681)
|...+++..+...- .+-...+..+ +..+...+++..|.+.++.+...- ..|...++-.++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 87777776533221 1222233333 333334468888888887776542 2333444444554443 345456
Q ss_pred HHHHHHHHHHhCC---------CCCChhhHHHHHHHHH--hcCChhHHHHHHHHHH
Q 040136 238 SACSLLRDMTKHG---------CVPNSVVYQTLIHALS--KSNRVSEALMLLEEMI 282 (681)
Q Consensus 238 ~A~~~~~~~~~~~---------~~~~~~~~~~li~~~~--~~~~~~~A~~~~~~m~ 282 (681)
.+.+.++.+.... ..|-..+|..+++.++ ..|++..+...++++.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666553211 1344556666666554 4666656665555443
No 340
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=80.65 E-value=53 Score=31.16 Aligned_cols=117 Identities=10% Similarity=0.031 Sum_probs=70.8
Q ss_pred CChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHh-cCCcCcH-HHHHHHHHHC-CCCCChhhHHHHHHHHHhcCChhHH
Q 040136 163 GVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVA-GNCHKVA-PNLFYDMLSK-GISPTVYTFGVVMKALCMVNEVDSA 239 (681)
Q Consensus 163 g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~A-~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~A 239 (681)
....+|+.+|+....+..+-.|......+++.+.. .+..-.| .++.+-+... +-.++..+....+..++..+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 34556777776433111223456666666776665 3322222 2222333222 3456677777788888888888888
Q ss_pred HHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 040136 240 CSLLRDMTKH-GCVPNSVVYQTLIHALSKSNRVSEALMLLE 279 (681)
Q Consensus 240 ~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 279 (681)
.++++..... +...|...|...|+.....|+..-..++..
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 8888776654 445677788888888888888765555444
No 341
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=80.08 E-value=97 Score=33.86 Aligned_cols=185 Identities=12% Similarity=0.105 Sum_probs=100.0
Q ss_pred HHHHHHHHcHhhcCCCCCHH--hHHHHHHHHH-hcCCcCcHHHHHHHHHHCCCCCChh-----hHHHHHHHHHhcCChhH
Q 040136 167 QATRLLLDMKSVYGCQPTFR--SYNVVLDVLV-AGNCHKVAPNLFYDMLSKGISPTVY-----TFGVVMKALCMVNEVDS 238 (681)
Q Consensus 167 ~A~~~~~~~~~~~~~~~~~~--~~~~ll~~~~-~~~~~~~A~~~~~~m~~~~~~p~~~-----~~~~ll~~~~~~g~~~~ 238 (681)
.|++.++.+.+...++|... ++--+...|. ...+++.|...+++....--.++.. ....+++.+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 34555655553344444333 3444555555 5677888888888765543222211 1234456666666555
Q ss_pred HHHHHHHHHhCC----CCCChhhHHHH-HHHHHhcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHH--hcCCHHH
Q 040136 239 ACSLLRDMTKHG----CVPNSVVYQTL-IHALSKSNRVSEALMLLEEMILMG---CTSDVQTFNDVIHGLC--KVNRIHE 308 (681)
Q Consensus 239 A~~~~~~~~~~~----~~~~~~~~~~l-i~~~~~~~~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~--~~~~~~~ 308 (681)
|...+++..+.- ..+-...+..+ +..+...++...|.+.++.+.... ..|....+..++.+.. ..+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 888887766531 11222233333 222333478888998888877432 2344455555555444 3455667
Q ss_pred HHHHHHHHHHCCC---------CCCcccHHHHHHHH--HhcCCHHHHHHHHhhcC
Q 040136 309 AAKLVDRMLVRGF---------TPDDITYGVLMHGL--CRTGRVDEARALLNKIP 352 (681)
Q Consensus 309 a~~~~~~~~~~~~---------~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~ 352 (681)
+.+.++.+..... .|-..++..+++.+ ...|+++.+...++++.
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777766643211 22334555555544 45677777777666544
No 342
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.04 E-value=48 Score=30.26 Aligned_cols=16 Identities=13% Similarity=0.125 Sum_probs=10.1
Q ss_pred HhcCCHHHHHHHHHHH
Q 040136 438 CKEGQLEKANIIINEM 453 (681)
Q Consensus 438 ~~~g~~~~A~~~~~~~ 453 (681)
.-.+.+++|.++|.+.
T Consensus 25 gg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERA 40 (288)
T ss_pred CCCcchHHHHHHHHHH
Confidence 3345677777777654
No 343
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.13 E-value=3.4 Score=26.26 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=11.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 040136 596 LINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34444455555555555554443
No 344
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.84 E-value=41 Score=29.80 Aligned_cols=54 Identities=11% Similarity=0.059 Sum_probs=25.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 529 ALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIH 583 (681)
Q Consensus 529 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 583 (681)
++.+.+.++.|+.-....++.+.. .....-.-..+|-+..++++|++-|+++++
T Consensus 143 a~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 143 ALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 444555555555555554443321 112222223445555555555555555555
No 345
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=77.77 E-value=16 Score=29.31 Aligned_cols=58 Identities=9% Similarity=0.186 Sum_probs=40.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 574 ALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLI 632 (681)
Q Consensus 574 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 632 (681)
..+-++.+...++.|++.....-+.+|.+.+|+..|+++|+-+..+ +.+....|-.++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 3455556666678888888888888888888888888888887765 233333454444
No 346
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.77 E-value=1.1e+02 Score=33.29 Aligned_cols=76 Identities=9% Similarity=-0.094 Sum_probs=42.7
Q ss_pred HHHHcCCCchHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCC
Q 040136 122 DKLGANKEFKVIDSVLLQMKEEGII-CRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNC 200 (681)
Q Consensus 122 ~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 200 (681)
+-+.+.+.+++|.++.+.....-.. ....+...++..+...|++++|-...-+|. .-+..-|..-+..+...++
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~-----gn~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML-----GNNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh-----cchHHHHHHHHHHhccccc
Confidence 3344556666666655544332210 123455666777777777777777776666 3445555555555555554
Q ss_pred cC
Q 040136 201 HK 202 (681)
Q Consensus 201 ~~ 202 (681)
..
T Consensus 439 l~ 440 (846)
T KOG2066|consen 439 LT 440 (846)
T ss_pred cc
Confidence 44
No 347
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.48 E-value=40 Score=30.36 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=24.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040136 262 IHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRM 316 (681)
Q Consensus 262 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 316 (681)
+..+.+.+...+++...++-.+.. +.|..+-..++..+|-.|++++|..-++..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 334444444445544444444332 333444444445555555555554444433
No 348
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=77.09 E-value=4.7 Score=23.23 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=8.0
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 040136 599 GLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~ 618 (681)
++.+.|++++|.+.|+++++
T Consensus 9 ~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 33333444444444444433
No 349
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.49 E-value=1.2e+02 Score=33.04 Aligned_cols=53 Identities=19% Similarity=0.092 Sum_probs=25.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 228 KALCMVNEVDSACSLLRDMTKHGCVP---NSVVYQTLIHALSKSNRVSEALMLLEEMI 282 (681)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 282 (681)
+.+.+.+.+++|+.+.+..... .| -...+..+|..+...|++++|-...-.|.
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh
Confidence 3344455555555554443322 12 12344555555555666666655555554
No 350
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=76.21 E-value=94 Score=31.61 Aligned_cols=103 Identities=12% Similarity=0.088 Sum_probs=49.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCC----HHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHh
Q 040136 568 TRKANTALEFLRDMIHRGLTPDIV----TYNSLINGLCKMGC----IQEALNLFDKLQAEGIYP--DAVTYNTLISWHFK 637 (681)
Q Consensus 568 ~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~ 637 (681)
.|+.++|+.++-.+.. +.||.. -|..++..+..... .-...+.++...+.-+-. |........-....
T Consensus 711 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (831)
T PRK15180 711 EGRLDEALSVLISLKR--IEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAMH 788 (831)
T ss_pred cccHHHHHHHHHhhhc--cCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhHhH
Confidence 4678888887766654 677753 24444544432211 111112222222210111 22221111112245
Q ss_pred cCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHh
Q 040136 638 EGLFDDAFLILHKGVANGFVPND--ATWYILVRNLVK 672 (681)
Q Consensus 638 ~g~~~~A~~~~~~~~~~g~~~~~--~~~~~ll~~~~~ 672 (681)
..++..|+++++++.+.+-+..+ ...+.++.++-+
T Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (831)
T PRK15180 789 LRDYTQALQYWQRLEKVNGPTEPVTRQISTCITALQK 825 (831)
T ss_pred HHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHhh
Confidence 57889999999999886432222 334455555443
No 351
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=75.72 E-value=75 Score=30.21 Aligned_cols=57 Identities=9% Similarity=0.097 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHH
Q 040136 517 PLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK-GIKPSSISCNILINGLCRTRKANT 573 (681)
Q Consensus 517 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~ 573 (681)
.++..+...++..++..+++.+-.++|+..... +...|..-|..++......|+..-
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~ 256 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEV 256 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHH
Confidence 334444445555555555555555555544433 333344445555555555555433
No 352
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.58 E-value=4.2 Score=22.22 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=10.7
Q ss_pred HHHHHHHHhCCChHHHHHHHH
Q 040136 153 ILIMKYYGRGGVPGQATRLLL 173 (681)
Q Consensus 153 ~~l~~~~~~~g~~~~A~~~~~ 173 (681)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344455555555555555443
No 353
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.24 E-value=81 Score=29.91 Aligned_cols=71 Identities=14% Similarity=0.169 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHH
Q 040136 557 SCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE-----GIYPDAVTY 628 (681)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~ 628 (681)
+++.....|..+|.+.+|.++.++.+..+ +.+...|..|++.+...||--.|...++.+.+. |+..|..++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 34556677888899999999888888752 446777888888899999877777777766543 665554443
No 354
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=74.08 E-value=3.8 Score=23.61 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=23.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040136 628 YNTLISWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
+-.+..++.+.|++++|.+.|+++++.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 456778889999999999999999974
No 355
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=73.67 E-value=1.1e+02 Score=31.29 Aligned_cols=110 Identities=22% Similarity=0.170 Sum_probs=77.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHH---CCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCCH--
Q 040136 563 NGLCRTRKANTALEFLRDMIH---RGL--TP---DIVTYNSLINGLCKMGCIQEALNLFDKLQA-------EGIYPDA-- 625 (681)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~---~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~p~~-- 625 (681)
..+...|++.+|.+++...-- .|. .| .-..||.|.-.+.+.|.+..+..+|.++.+ .|+.|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 345567999999988865321 222 22 123457777777788888888888888875 2655532
Q ss_pred --------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 626 --------VTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKE 673 (681)
Q Consensus 626 --------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 673 (681)
.+...+.-.|...|+.-.|.+.|.+.+.. +..++..|-.+..+|...
T Consensus 328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 11222344578899999999999999975 678899999999999765
No 356
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=73.58 E-value=31 Score=26.56 Aligned_cols=51 Identities=10% Similarity=0.023 Sum_probs=24.3
Q ss_pred HHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCC
Q 040136 158 YYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKG 215 (681)
Q Consensus 158 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 215 (681)
.+...|++++|..+.+.+. .||...|-++-. .+.|..+++..-+.+|...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~~-----~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLC-----YPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCCC-----CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3445555555555544432 455555544433 23444444444444444443
No 357
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=73.43 E-value=11 Score=25.26 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=18.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 631 LISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVR 668 (681)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 668 (681)
+.-++.+.|++++|.++.+.+++ +.|+..-...|..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHH
Confidence 34455666666666666666665 4555544444433
No 358
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=73.05 E-value=92 Score=30.03 Aligned_cols=67 Identities=13% Similarity=0.134 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh----cCCCcCHhhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCC
Q 040136 394 TFNILIHGLCKQRRFGSALELVNAMAV----KGCEPNIVTYTILVDG-FCKEGQLEKANIIINEMLAKGLSL 460 (681)
Q Consensus 394 ~~~~ll~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~ 460 (681)
.+......||+.|+.+.|.+.++...+ .|.+.|+..+..-+.. |....-..+-++..+.+.+.|..+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDW 177 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDW 177 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCh
Confidence 445556677888888887777766543 3556666554443333 222223344444445555555433
No 359
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=72.94 E-value=70 Score=29.36 Aligned_cols=118 Identities=10% Similarity=-0.004 Sum_probs=64.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHH
Q 040136 495 FLRRGSLHEAHKLVNDMLFRGCPLDEI-TYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSI-SCNILINGLCRTRKAN 572 (681)
Q Consensus 495 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~ 572 (681)
|....+++.|+..|.+.+.. .|+.. -|..=+.++.+..+++.+..--.+.++. .|+.+ ....+..++.....++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 55556677777766666654 44443 3344455566666777766665565553 44433 2334445555666777
Q ss_pred HHHHHHHHHHH----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040136 573 TALEFLRDMIH----RGLTPDIVTYNSLINGLCKMGCIQEALNLFDKL 616 (681)
Q Consensus 573 ~A~~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 616 (681)
+|+..+.+..+ ..+++-...+..|..+--+.=...+..++.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 77777777643 233444455555555433333344444444443
No 360
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=72.78 E-value=17 Score=37.71 Aligned_cols=105 Identities=15% Similarity=0.040 Sum_probs=59.1
Q ss_pred HHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhH
Q 040136 159 YGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDS 238 (681)
Q Consensus 159 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 238 (681)
+...|+...|...+.... ...-....+..-.+...+.+.|...+|-.++.+.+... ....-++..+.+++....+++.
T Consensus 617 wr~~gn~~~a~~cl~~a~-~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRAL-NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eeecCCcHHHHHHHHHHh-ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHH
Confidence 344577777777666654 11111112233344555666666667777766666554 2244556666677777777777
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 040136 239 ACSLLRDMTKHGCVPNSVVYQTLIHALS 266 (681)
Q Consensus 239 A~~~~~~~~~~~~~~~~~~~~~li~~~~ 266 (681)
|++.|++..+.. +.+...-+.|...-|
T Consensus 695 a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 777777766654 334455555554444
No 361
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=71.87 E-value=74 Score=28.43 Aligned_cols=72 Identities=13% Similarity=0.042 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 040136 537 DKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHR---GLTPDIVTYNSLINGLCKMGCIQEA 609 (681)
Q Consensus 537 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A 609 (681)
+.|...|-.+...+.--++.....|+..|. ..+.+++.+++.+.++. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444433333333333333332 44455555555554442 1234455555555555555555544
No 362
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=71.82 E-value=1.1e+02 Score=30.57 Aligned_cols=100 Identities=12% Similarity=0.073 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHcHhh------------------------cCCCCCHHhHHHH---HHHHHhcCC
Q 040136 148 RESLFILIMKYYGRGGVPGQATRLLLDMKSV------------------------YGCQPTFRSYNVV---LDVLVAGNC 200 (681)
Q Consensus 148 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------------~~~~~~~~~~~~l---l~~~~~~~~ 200 (681)
...++..+...+..+|+.+.|.+++++..=. +...-|...|.++ |..+.+.|.
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 4555666666666666666666555554300 1112233333333 445556666
Q ss_pred cCcHHHHHHHHHHCCCCCChhhHHHHHHHHH-hcCChhHHHHHHHHHH
Q 040136 201 HKVAPNLFYDMLSKGISPTVYTFGVVMKALC-MVNEVDSACSLLRDMT 247 (681)
Q Consensus 201 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~g~~~~A~~~~~~~~ 247 (681)
+..|+++.+-+...+..-|.......|+.|+ +.++++--.++.+...
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 6666666666666554334444444455443 4455555555555443
No 363
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=69.82 E-value=12 Score=23.87 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=11.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 040136 561 LINGLCRTRKANTALEFLRDMIH 583 (681)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~~~ 583 (681)
+..+|...|+.+.|.+++++.+.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555553
No 364
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=69.82 E-value=66 Score=30.28 Aligned_cols=88 Identities=11% Similarity=-0.059 Sum_probs=54.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---
Q 040136 491 LIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCR--- 567 (681)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--- 567 (681)
=|.+++..+++.+++...-+--+.--...+.+...-|-.|.+.|++..+.++-...+..--..+...|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 36778888888887765544333222234445555566678888888888777777764222233446655555543
Q ss_pred --cCCHHHHHHHH
Q 040136 568 --TRKANTALEFL 578 (681)
Q Consensus 568 --~g~~~~A~~~~ 578 (681)
.|.+++|.++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 58888887776
No 365
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=68.76 E-value=20 Score=37.09 Aligned_cols=102 Identities=15% Similarity=0.032 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040136 552 KPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTL 631 (681)
Q Consensus 552 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 631 (681)
.|--.+.|.-.-.....|+...|...+.........-..+....|.+...+.|...+|-.++.+..... .....++..+
T Consensus 604 ~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~ 682 (886)
T KOG4507|consen 604 APIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSL 682 (886)
T ss_pred CCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhc
Confidence 333333343333344567777777777766653211123444556666777777777777777776653 4445666777
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC
Q 040136 632 ISWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 632 ~~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
.+++.-..+.+.|++.|+.+.+.
T Consensus 683 g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 683 GNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred chhHHHHhhhHHHHHHHHHHHhc
Confidence 77777777888888888887764
No 366
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=67.37 E-value=79 Score=30.62 Aligned_cols=53 Identities=13% Similarity=0.183 Sum_probs=24.1
Q ss_pred HHcCCHHHHHHHHHHHHHC---CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 531 CNAGAVDKGLGLFEEMMRK---GIKPSSISC--NILINGLCRTRKANTALEFLRDMIH 583 (681)
Q Consensus 531 ~~~g~~~~A~~~~~~~~~~---~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 583 (681)
-+.++.++|.++++++.+. .-.|+.+.| ..+++.+...|+.+++.+.+.+..+
T Consensus 86 ~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 86 EQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3444555555555555443 122333333 2233344444555555555554444
No 367
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=67.26 E-value=1e+02 Score=28.17 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhcCCH-------HHHHHHHHHHHHCCCCC----CH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 040136 591 VTYNSLINGLCKMGCI-------QEALNLFDKLQAEGIYP----DA-VTYNTLISWHFKEGLFDDAFLILHKGVANGFVP 658 (681)
Q Consensus 591 ~~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~p----~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 658 (681)
..+-.+.+.|...|+. ..|.+.|.+..+..-.| +. ...-.++....+.|+.++|.+.|.+++..+-..
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 3444556666666663 34555666665542121 22 233345566788899999999999998764333
No 368
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=66.97 E-value=1.2e+02 Score=28.74 Aligned_cols=31 Identities=26% Similarity=0.205 Sum_probs=18.2
Q ss_pred HHHHHhcCCcCcHHHHHHHHHHCCCCCChhh
Q 040136 192 LDVLVAGNCHKVAPNLFYDMLSKGISPTVYT 222 (681)
Q Consensus 192 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 222 (681)
.+-.++.+++++|+..+.+++..|+..|..+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~ 40 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKT 40 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhh
Confidence 3444556666666666666666665555444
No 369
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=66.41 E-value=18 Score=26.44 Aligned_cols=46 Identities=17% Similarity=0.154 Sum_probs=23.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHH
Q 040136 602 KMGCIQEALNLFDKLQAEGIYPD--AVTYNTLISWHFKEGLFDDAFLI 647 (681)
Q Consensus 602 ~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~ 647 (681)
..++.++|+..|++.++.-..+. -.++..|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666655421111 22445555666666666555543
No 370
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=66.40 E-value=74 Score=26.28 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=9.6
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 040136 599 GLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~ 618 (681)
++.+.+++++++++.+.+.+
T Consensus 80 g~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 80 GHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHhhHHHHHHHHHHHHh
Confidence 44444445555444444444
No 371
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=66.23 E-value=1.1e+02 Score=28.19 Aligned_cols=113 Identities=11% Similarity=0.026 Sum_probs=70.7
Q ss_pred HHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 040136 449 IINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANT-VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLI 527 (681)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 527 (681)
.+.++.+.|-..........|+..|.+.+.. .|+. .-|+.-+.++.+..+++.+..--...++. .+......-.+.
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql-~~N~vk~h~flg 85 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL-DPNLVKAHYFLG 85 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc-ChHHHHHHHHHH
Confidence 3444455554444555566666666555543 3555 45566777888899999888777777665 233344445566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHH
Q 040136 528 KALCNAGAVDKGLGLFEEMMRK----GIKPSSISCNILING 564 (681)
Q Consensus 528 ~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~l~~~ 564 (681)
.+......+++|+..+.++... .+.+.......|..+
T Consensus 86 ~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 86 QWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 6777888899999999888543 334444555555544
No 372
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=65.92 E-value=20 Score=26.23 Aligned_cols=46 Identities=17% Similarity=0.228 Sum_probs=24.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 040136 567 RTRKANTALEFLRDMIHRGLTPD--IVTYNSLINGLCKMGCIQEALNL 612 (681)
Q Consensus 567 ~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~ 612 (681)
...+.++|+..|+..++.-..+. -.++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666665422221 13455556666666666665554
No 373
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=65.45 E-value=2.1e+02 Score=31.25 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=20.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 040136 225 VVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSK 267 (681)
Q Consensus 225 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 267 (681)
.++-.|.+.|++++|.++....... .......+-..+..|..
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYAS 157 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHh
Confidence 3455556666666666666443322 23333445555555554
No 374
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=64.79 E-value=1.5e+02 Score=29.22 Aligned_cols=138 Identities=10% Similarity=0.115 Sum_probs=95.6
Q ss_pred CCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 517 PLDEITYNGLIKALCNAG------------AVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHR 584 (681)
Q Consensus 517 ~~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 584 (681)
|-|..+|..++..--..- -.+.-+.+++++++.+. .+......++..+.+..+.++..+-+++++..
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 667778877775433221 14566788999988854 46777788888999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHC------CC------CCC-----HHHHHHHHHHHHhcCChhHH
Q 040136 585 GLTPDIVTYNSLINGLCK---MGCIQEALNLFDKLQAE------GI------YPD-----AVTYNTLISWHFKEGLFDDA 644 (681)
Q Consensus 585 ~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~------~~------~p~-----~~~~~~l~~~~~~~g~~~~A 644 (681)
. +-+...|...+..... .-.++....+|.+.++. +. .++ ..++..+...+..+|-.+.|
T Consensus 95 ~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A 173 (321)
T PF08424_consen 95 N-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA 173 (321)
T ss_pred C-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 2 3367788888776543 23566777777666554 21 111 12333444556789999999
Q ss_pred HHHHHHHHHCCC
Q 040136 645 FLILHKGVANGF 656 (681)
Q Consensus 645 ~~~~~~~~~~g~ 656 (681)
..+++-+++..+
T Consensus 174 va~~Qa~lE~n~ 185 (321)
T PF08424_consen 174 VALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHc
Confidence 999999999754
No 375
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=64.57 E-value=1.8e+02 Score=30.13 Aligned_cols=165 Identities=13% Similarity=0.136 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHH
Q 040136 390 PDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEA 469 (681)
Q Consensus 390 p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a 469 (681)
.|.....+++..+.......-...+..+|...| .+-..|..++.+|... ..++-..+++++.+-...
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn---------- 130 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN---------- 130 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch----------
Confidence 344555566666666666666666666666653 2455566666666666 444455555555443221
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 040136 470 LGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLD-----EITYNGLIKALCNAGAVDKGLGLFE 544 (681)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~ 544 (681)
|++.-..|...|-+ ++...+...|.++...-++.. ...|..|...- ..+.+....+..
T Consensus 131 --------------Dvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~ 193 (711)
T COG1747 131 --------------DVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQK 193 (711)
T ss_pred --------------hHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHH
Confidence 22222223332322 455555555555444321100 11222222211 233444455444
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 545 EMMRK-GIKPSSISCNILINGLCRTRKANTALEFLRDMIHR 584 (681)
Q Consensus 545 ~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 584 (681)
.+... |..--.+.+..+-.-|....++.+|++++..+++.
T Consensus 194 kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 194 KIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred HHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence 44443 33333444555555566666666666666665554
No 376
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=64.34 E-value=1.4e+02 Score=28.84 Aligned_cols=97 Identities=20% Similarity=0.208 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHH---
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHR----GLTPDIVTYNSLIN-GLCKMGCIQEALNLFDKLQAEGIYPDAV--- 626 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~--- 626 (681)
...+......||+.|+.+.|++.+.+..+. |.+.|...+..=+. .|....-+.+-++..+.+.+.|-.-+..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 355667778889999999988888776554 66666655443222 2333333556666667777776555432
Q ss_pred -HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 627 -TYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 627 -~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
+|..+ .|....++.+|-.+|-+.+.
T Consensus 184 KvY~Gl--y~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 184 KVYQGL--YCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHHhHHHHHHHHHHHcc
Confidence 22222 24456778888888777764
No 377
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=64.24 E-value=11 Score=38.12 Aligned_cols=105 Identities=15% Similarity=0.137 Sum_probs=65.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 040136 527 IKALCNAGAVDKGLGLFEEMMRKGIKPSSISC-NILINGLCRTRKANTALEFLRDMIHRGLTPD-IVTYNSLINGLCKMG 604 (681)
Q Consensus 527 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 604 (681)
++.+.+.+.++.|..++.++++. .|+...| ..-..++.+.+++..|+.-+.++++.. |+ ...|--=..++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHH
Confidence 34455667788888888888775 4544433 333466777778888877777777642 33 233333344556667
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 605 CIQEALNLFDKLQAEGIYPDAVTYNTLISWHFK 637 (681)
Q Consensus 605 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 637 (681)
++.+|...|+.... +.|+..-....+.-|-+
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 77777777777776 57776666666655543
No 378
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=63.18 E-value=15 Score=20.14 Aligned_cols=26 Identities=23% Similarity=0.232 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 628 YNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
|..+...+...|++++|...+++.++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 33444445555555555555555443
No 379
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=61.83 E-value=88 Score=25.62 Aligned_cols=44 Identities=27% Similarity=0.362 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 040136 608 EALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGLFDDAFLILHKG 651 (681)
Q Consensus 608 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 651 (681)
.+.++|+.|..+|+--. ...|......+...|++++|.++++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 77778888877765433 556677777777788888888877654
No 380
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=61.74 E-value=1.5e+02 Score=28.32 Aligned_cols=18 Identities=22% Similarity=0.534 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhcCCHHHH
Q 040136 592 TYNSLINGLCKMGCIQEA 609 (681)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A 609 (681)
+|..|+.+++..|+.+-+
T Consensus 323 ~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhhHHHHHHhcCChHHHH
Confidence 466666677766665544
No 381
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=61.48 E-value=74 Score=24.62 Aligned_cols=53 Identities=19% Similarity=0.328 Sum_probs=28.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040136 562 INGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEG 620 (681)
Q Consensus 562 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 620 (681)
+..+...|++++|..+.+.. ..||...|-+|-. .+.|-.+++..-+..|...|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 33455666666666665544 2466665554422 35555555555555555554
No 382
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=60.64 E-value=1.6e+02 Score=28.30 Aligned_cols=156 Identities=16% Similarity=0.060 Sum_probs=97.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----
Q 040136 499 GSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCN----AGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTR----- 569 (681)
Q Consensus 499 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----- 569 (681)
.+..+|.+.+..+.+.|. ......|...|.. ..+..+|..+|+.+.+.|..+...+...+...|..-.
T Consensus 91 ~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 91 RDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred ccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcc
Confidence 357778888887776653 2333345555544 3378889999999888875543233444444444321
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----
Q 040136 570 --KANTALEFLRDMIHRGLTPDIVTYNSLINGLCK----MGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEG---- 639 (681)
Q Consensus 570 --~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---- 639 (681)
+...|...+.++...+ +......|...|.. ..+.++|...|++.-+.|. ......+. .+...|
T Consensus 168 ~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~ 240 (292)
T COG0790 168 AYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVK 240 (292)
T ss_pred cHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCch
Confidence 2347888888888775 33344444444432 3478899999999998763 33333333 555444
Q ss_pred -----------ChhHHHHHHHHHHHCCCCCCHHHHH
Q 040136 640 -----------LFDDAFLILHKGVANGFVPNDATWY 664 (681)
Q Consensus 640 -----------~~~~A~~~~~~~~~~g~~~~~~~~~ 664 (681)
+...|...+......|.........
T Consensus 241 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 241 KAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred hhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 7788888888888887666655555
No 383
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=60.10 E-value=76 Score=27.79 Aligned_cols=66 Identities=14% Similarity=0.156 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHHCCCCCC--HHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 570 KANTALEFLRDMIHRGLTPD--IVTY-----NSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKE 638 (681)
Q Consensus 570 ~~~~A~~~~~~~~~~~~~p~--~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 638 (681)
-.+.|+.+|+.+.+.-..|. .... ...+..|.+.|.+++|.+++++..+ .|+......-+....+.
T Consensus 84 PLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 84 PLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIRE 156 (200)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHc
Confidence 36778888888776532221 1111 2234467788888888888888776 44554444444333333
No 384
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.10 E-value=1.5e+02 Score=27.71 Aligned_cols=212 Identities=13% Similarity=0.117 Sum_probs=123.9
Q ss_pred CCCcCHhhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 040136 422 GCEPNIVTYTILVDG-FCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGS 500 (681)
Q Consensus 422 ~~~~~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 500 (681)
+-.||+..-|..-.. -.+...+++|+.-|.++++.... . -...-.....++..+.+.++
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgE-----K---------------geWGFKALKQmiKI~f~l~~ 80 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGE-----K---------------GEWGFKALKQMIKINFRLGN 80 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccc-----c---------------chhHHHHHHHHHHHHhcccc
Confidence 445665543332221 12344677888888777764210 0 01122334456777888999
Q ss_pred HHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCC
Q 040136 501 LHEAHKLVNDMLFR-----GCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK-----GIKPSSISCNILINGLCRTRK 570 (681)
Q Consensus 501 ~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~ 570 (681)
+++..+.|++++.. .-.-+....|.+++-.....+.+.-..+|+.-++. +-+.-..|-.-|...|...|.
T Consensus 81 ~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e 160 (440)
T KOG1464|consen 81 YKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGE 160 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHH
Confidence 99988888877542 11235566777777666666666666666544332 111122333567777888888
Q ss_pred HHHHHHHHHHHHHC----CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHH----HH
Q 040136 571 ANTALEFLRDMIHR----GLTPD-------IVTYNSLINGLCKMGCIQEALNLFDKLQAE-GIYPDAVTYNTLI----SW 634 (681)
Q Consensus 571 ~~~A~~~~~~~~~~----~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~----~~ 634 (681)
+.+-.++++++... .-..| ...|..=|+.|....+-.+-..++++.+.. .--|.+.+...+- +.
T Consensus 161 ~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKM 240 (440)
T KOG1464|consen 161 YTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKM 240 (440)
T ss_pred HHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCcc
Confidence 88888888877643 11111 245666677888888878888888877654 2244444433322 23
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 040136 635 HFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~~ 653 (681)
+.+.|+|++|-.-|-++.+
T Consensus 241 Hlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 241 HLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred ccccchHHHHHhHHHHHHh
Confidence 5677899888765555554
No 385
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=60.08 E-value=1.6e+02 Score=27.94 Aligned_cols=109 Identities=16% Similarity=0.181 Sum_probs=63.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHh--
Q 040136 363 INGYVISGRFDEAKAIFYDSMLSV-GCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCK-- 439 (681)
Q Consensus 363 ~~~~~~~g~~~~a~~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-- 439 (681)
|.+++..|++.+++.++.+..... .++|.. ...-|-.|.+.++...+.++-......--.-+...|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 556667777777776555544332 233333 333344578888888888888777764223334457777777655
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHh
Q 040136 440 ---EGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLL 478 (681)
Q Consensus 440 ---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 478 (681)
.|.+++|+++. .|...-...+-.+++++.++..+
T Consensus 168 LlPLG~~~eAeelv-----~gs~af~EeQr~~aL~~v~~~~q 204 (309)
T PF07163_consen 168 LLPLGHFSEAEELV-----VGSAAFTEEQRQEALQAVEEARQ 204 (309)
T ss_pred HhccccHHHHHHHH-----hcCCCCCHHHHHHHHHHHHHHHH
Confidence 68888888776 22222223344445555544444
No 386
>PHA02875 ankyrin repeat protein; Provisional
Probab=60.07 E-value=2.1e+02 Score=29.35 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=5.7
Q ss_pred HHHHHhcCCCcC
Q 040136 415 VNAMAVKGCEPN 426 (681)
Q Consensus 415 ~~~~~~~~~~~~ 426 (681)
.+.+.+.|..++
T Consensus 218 v~~Ll~~gad~n 229 (413)
T PHA02875 218 VRLFIKRGADCN 229 (413)
T ss_pred HHHHHHCCcCcc
Confidence 334445555544
No 387
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=59.60 E-value=1.3e+02 Score=26.67 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=39.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCC--------------CcCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 040136 397 ILIHGLCKQRRFGSALELVNAMAVKGC--------------EPNIVTYTILVDGFCKEGQLEKANIIINE 452 (681)
Q Consensus 397 ~ll~~~~~~~~~~~A~~~~~~~~~~~~--------------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 452 (681)
+++-.|-+..++.++.++++.|.+..+ .+.-..-|.....+.+.|.++.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 345566677777777777777765421 22334567778889999999999988873
No 388
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=59.40 E-value=68 Score=24.07 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=22.5
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHH
Q 040136 232 MVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEA 274 (681)
Q Consensus 232 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 274 (681)
..|+.+.|.+++..+. .| +..|...+.++...|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 3466666666666666 54 44556666666665554443
No 389
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=58.46 E-value=59 Score=24.88 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=14.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 040136 631 LISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
+...+...|.+++|.+.+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445566777777776666665
No 390
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=58.22 E-value=3.1e+02 Score=30.74 Aligned_cols=230 Identities=18% Similarity=0.058 Sum_probs=115.1
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCcCHh-------hHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHH
Q 040136 402 LCKQRRFGSALELVNAMAVKGCEPNIV-------TYTILVDG-FCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLY 473 (681)
Q Consensus 402 ~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~ 473 (681)
.....++.+|..++.++...-..|+.. .++.+-.. -...|+++.|.++.+.....-
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L---------------- 488 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQL---------------- 488 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc----------------
Confidence 345678888888888876542222221 23333222 234677788877776665531
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHH--HHHHHHcCCHH--HHHHHHHHH
Q 040136 474 QDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEIT---YNGL--IKALCNAGAVD--KGLGLFEEM 546 (681)
Q Consensus 474 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l--~~~~~~~g~~~--~A~~~~~~~ 546 (681)
......+....+..+..+..-.|++++|..+..+..+..-.-+... |..+ ...+...|+.. +.+..|...
T Consensus 489 ---~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~ 565 (894)
T COG2909 489 ---PEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLI 565 (894)
T ss_pred ---ccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 1112234566677777888888999998888777655421222222 2222 22344566332 223333333
Q ss_pred HHC--CCC----CCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 547 MRK--GIK----PSSISCNILINGLCRT-RKANTALEFLRDMIHRGLTPDIVTY--NSLINGLCKMGCIQEALNLFDKLQ 617 (681)
Q Consensus 547 ~~~--~~~----p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~ 617 (681)
... +-. +-..++..+..++.+. +...+|..-++-.......|-.... ..|+......|+.++|...+.++.
T Consensus 566 ~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~ 645 (894)
T COG2909 566 REQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELE 645 (894)
T ss_pred HHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 222 001 1223344444444441 1222222222222222122222222 256777778899999988888887
Q ss_pred HCCCCC----CHHHHHHHHHHH--HhcCChhHHHHHHHH
Q 040136 618 AEGIYP----DAVTYNTLISWH--FKEGLFDDAFLILHK 650 (681)
Q Consensus 618 ~~~~~p----~~~~~~~l~~~~--~~~g~~~~A~~~~~~ 650 (681)
.....+ +...-...++.. ...|+.++|.....+
T Consensus 646 ~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 646 RLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 763222 222222333332 245677666665555
No 391
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=56.54 E-value=2e+02 Score=29.05 Aligned_cols=55 Identities=18% Similarity=0.316 Sum_probs=37.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHH--cCCHHHHHHHHHHHHHC
Q 040136 494 AFLRRGSLHEAHKLVNDMLFRGCPLDEI--TYNGLIKALCN--AGAVDKGLGLFEEMMRK 549 (681)
Q Consensus 494 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~--~g~~~~A~~~~~~~~~~ 549 (681)
.+.+.+++..|.++++.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445788888888888888876 555554 34444555543 45677888888877664
No 392
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=55.88 E-value=34 Score=23.77 Aligned_cols=25 Identities=12% Similarity=0.046 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 628 YNTLISWHFKEGLFDDAFLILHKGV 652 (681)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (681)
...++.+|...|++++|.++++++.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3345555555555555555555554
No 393
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=55.79 E-value=15 Score=30.06 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=14.8
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCH
Q 040136 635 HFKEGLFDDAFLILHKGVANGFVPND 660 (681)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~~~g~~~~~ 660 (681)
+...|.-.+|..+|++|+++|-+||.
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD 130 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc
Confidence 34445555666666666666655543
No 394
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=55.68 E-value=86 Score=25.44 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=20.1
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 544 EEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIH 583 (681)
Q Consensus 544 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 583 (681)
+.+...++.|++.....-+++|.+.+++..|.++|+-++.
T Consensus 73 N~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 73 NNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3333344455555555555555555555555555554443
No 395
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.84 E-value=30 Score=31.01 Aligned_cols=30 Identities=13% Similarity=0.088 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHcH
Q 040136 147 CRESLFILIMKYYGRGGVPGQATRLLLDMK 176 (681)
Q Consensus 147 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 176 (681)
|++.++..++..+...|+.++|.++.+++.
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 466666666666666666666666666665
No 396
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=54.59 E-value=1.4e+02 Score=29.11 Aligned_cols=94 Identities=22% Similarity=0.327 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHH-
Q 040136 558 CNILINGLCRTRKANTALEFLRDMIHR---GLTPDIVTYN--SLINGLCKMGCIQEALNLFDKLQA-----EGIYPDAV- 626 (681)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~- 626 (681)
...++....+.++.++|+++++++.+. .-.|+.+.|- ....++...||.+++.+.+....+ .|++|++.
T Consensus 78 vei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 78 VEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 344555556667888888888888764 2345665553 445566688888888888887777 46776554
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 627 TYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
.|..+..-|.+ ...+-..+|+.++.
T Consensus 158 ~fY~lssqYyk--~~~d~a~yYr~~L~ 182 (380)
T KOG2908|consen 158 SFYSLSSQYYK--KIGDFASYYRHALL 182 (380)
T ss_pred hHHHHHHHHHH--HHHhHHHHHHHHHH
Confidence 34444444443 23444445554444
No 397
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.99 E-value=3.9e+02 Score=30.35 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 257 VYQTLIHALSKSNRVSEALMLLEEMIL 283 (681)
Q Consensus 257 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 283 (681)
-|..|+..|...|..++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 466777778888888888888877765
No 398
>PRK10941 hypothetical protein; Provisional
Probab=52.47 E-value=2.2e+02 Score=27.18 Aligned_cols=76 Identities=13% Similarity=-0.058 Sum_probs=42.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 040136 594 NSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGLFDDAFLILHKGVAN-GFVPNDATWYILVRNLV 671 (681)
Q Consensus 594 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~ll~~~~ 671 (681)
+.+-.+|.+.++++.|.++.+.+... .|+ ..-+.--.-.|.+.|.+..|..=++..++. .-.|+.......+..+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 44555666667777777777776663 443 334455555566667777776666666653 12333344444444443
No 399
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=51.78 E-value=2e+02 Score=26.71 Aligned_cols=59 Identities=14% Similarity=0.079 Sum_probs=40.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 040136 490 TLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCN-AGAVDKGLGLFEEMMR 548 (681)
Q Consensus 490 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~ 548 (681)
.++...-+.|+++++...++++...+...+..-.+.|..+|-. .|....+++.+..+..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 3556677889999999999999988777777777777777632 4445566666666554
No 400
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=51.13 E-value=90 Score=26.36 Aligned_cols=60 Identities=13% Similarity=0.106 Sum_probs=40.8
Q ss_pred hhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCh
Q 040136 105 GSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVP 165 (681)
Q Consensus 105 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 165 (681)
.++.|++.++.= ..++..+...++.-.|.++++++.+.++..+..+....++.+...|-+
T Consensus 12 lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 12 LKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 344566665533 345666777777778888888888887777777776777777777654
No 401
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=50.88 E-value=72 Score=28.52 Aligned_cols=32 Identities=19% Similarity=0.055 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 622 YPDAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 622 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
.|+..+|..++.++...|+.++|.+...++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555555555555555544
No 402
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=50.74 E-value=2.3e+02 Score=26.97 Aligned_cols=121 Identities=15% Similarity=0.158 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-H
Q 040136 554 SSISCNILINGLCRTRKANTALEFLRDMIHR----GLTPDIVTYN-SLINGLCKMGCIQEALNLFDKLQAEGIYPDAV-T 627 (681)
Q Consensus 554 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~ 627 (681)
-...+..+...|++.++.+.+.+...+..+. |.+.|..... .|.-.|....=.++-++..+.|.++|-.-+.. -
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 3567788999999999999998888776653 5555543221 22223334444677888888889887554432 2
Q ss_pred HHHHHH-HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040136 628 YNTLIS-WHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKEI 674 (681)
Q Consensus 628 ~~~l~~-~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 674 (681)
|...-. .+....++.+|-.++...+..=-......|+..+.--.-.|
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vrYa~~~G 241 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSDILPTFESSELISYSRAVRYAIFCG 241 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhccccccccccHHHHHHHHHHhh
Confidence 222222 23455678888888877765311222345666555444444
No 403
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=50.58 E-value=14 Score=30.12 Aligned_cols=32 Identities=25% Similarity=0.447 Sum_probs=22.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 566 CRTRKANTALEFLRDMIHRGLTPDIVTYNSLING 599 (681)
Q Consensus 566 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 599 (681)
...|.-.+|..+|++|++.|-+||. |+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 3446666778888888888777774 6666654
No 404
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=50.42 E-value=66 Score=20.92 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=15.9
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 637 KEGLFDDAFLILHKGVANGFVPNDATWYILV 667 (681)
Q Consensus 637 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 667 (681)
+.|-.+++..++++|.+.|+.-+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444555555555555555555555544443
No 405
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=50.32 E-value=1.8e+02 Score=25.74 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=28.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC--------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040136 561 LINGLCRTRKANTALEFLRDMIHRG--------------LTPDIVTYNSLINGLCKMGCIQEALNLFD 614 (681)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~~~~~--------------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 614 (681)
++..|-+..++.++.++++.|.+.. ..+--...|.-...+.+.|.++.|..+++
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 3444555555666666665554421 12223344555566666666666666655
No 406
>PRK10941 hypothetical protein; Provisional
Probab=50.02 E-value=2.4e+02 Score=26.92 Aligned_cols=57 Identities=14% Similarity=0.020 Sum_probs=30.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 526 LIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIH 583 (681)
Q Consensus 526 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 583 (681)
+-.+|.+.++++.|....+.++..... ++.-+.--.-.|.+.|.+..|..-++..++
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 344555566666666666666554221 333444444455566666666665555554
No 407
>PRK11619 lytic murein transglycosylase; Provisional
Probab=49.75 E-value=3.9e+02 Score=29.41 Aligned_cols=115 Identities=10% Similarity=0.060 Sum_probs=70.1
Q ss_pred hcCCHHHHHHHHhhcCC-------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 040136 337 RTGRVDEARALLNKIPS-------ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFG 409 (681)
Q Consensus 337 ~~g~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 409 (681)
...+.+.|..++..... ....++..++...+..+...++.. .++...... .+......-+....+.++++
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~-w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~ 329 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAK-WRDDVIMRS--QSTSLLERRVRMALGTGDRR 329 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHH-HHHhccccc--CCcHHHHHHHHHHHHccCHH
Confidence 34566889988887633 112345555544444433566666 555433222 24444555566666899999
Q ss_pred HHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 410 SALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLA 455 (681)
Q Consensus 410 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 455 (681)
.+...+..|.... .....-.-=+..++...|+.++|...|+.+..
T Consensus 330 ~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 330 GLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9988888875532 22233333455666678999999999888744
No 408
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=49.74 E-value=2.1e+02 Score=26.18 Aligned_cols=25 Identities=12% Similarity=0.073 Sum_probs=14.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 560 ILINGLCRTRKANTALEFLRDMIHR 584 (681)
Q Consensus 560 ~l~~~~~~~g~~~~A~~~~~~~~~~ 584 (681)
.++....+.|+.++|.+.|.++...
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 4444555566666666666666654
No 409
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.38 E-value=3.3e+02 Score=28.49 Aligned_cols=101 Identities=19% Similarity=0.205 Sum_probs=53.7
Q ss_pred HHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040136 502 HEAHKLVNDML-FRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRD 580 (681)
Q Consensus 502 ~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 580 (681)
++..+.++.+. ..|+..+......++. ...|+...|+.+++++...+ ....++..+ .+
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~--~~~it~~~V-----------------~~ 241 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFT--DSKLTGVKI-----------------RK 241 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhC--CCCcCHHHH-----------------HH
Confidence 33444444433 2455555555554443 23577777777777655321 011122111 11
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 040136 581 MIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAV 626 (681)
Q Consensus 581 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 626 (681)
+. |. .+...+..++.++...+....|+.++.++.+.|..|...
T Consensus 242 ~l--g~-~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 242 MI--GY-HGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred Hh--CC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 11 22 255556666666666555678888888888887665543
No 410
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=49.35 E-value=70 Score=21.38 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=13.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 040136 598 NGLCKMGCIQEALNLFDKLQAEGIYPDA 625 (681)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 625 (681)
-++.+.|++++|.+..+.+.+ +.|+.
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~--~eP~N 34 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLE--IEPDN 34 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH--HTTS-
T ss_pred HHHHHhhhHHHHHHHHHHHHh--hCCCc
Confidence 345555556666655555555 35543
No 411
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=48.65 E-value=2.2e+02 Score=26.21 Aligned_cols=141 Identities=13% Similarity=0.140 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 487 TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLC 566 (681)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 566 (681)
.....+..|.+.-++.-|....+++.+- ..+..++ --|.+..+.+--.++.+-....++..+......++ +.
T Consensus 132 AlRRtMEiyS~ttRFalaCN~s~KIiEP-----IQSRCAi-LRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--ft 203 (333)
T KOG0991|consen 132 ALRRTMEIYSNTTRFALACNQSEKIIEP-----IQSRCAI-LRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FT 203 (333)
T ss_pred HHHHHHHHHcccchhhhhhcchhhhhhh-----HHhhhHh-hhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hh
Confidence 3444555666666666665555554431 1122222 23455554444444444444456665666665555 45
Q ss_pred hcCCHHHHHHHHHHHHHC-C-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 567 RTRKANTALEFLRDMIHR-G-----------LTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISW 634 (681)
Q Consensus 567 ~~g~~~~A~~~~~~~~~~-~-----------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 634 (681)
..|+..+|+..++.-... | -.|.+.....++..|.+ +++++|.+++.++-+.|+.|... .+.+.+.
T Consensus 204 a~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Di-i~~~FRv 281 (333)
T KOG0991|consen 204 AQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDI-ITTLFRV 281 (333)
T ss_pred ccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHH-HHHHHHH
Confidence 789999999998875542 1 24666667777776654 78999999999999999877543 3445555
Q ss_pred HHh
Q 040136 635 HFK 637 (681)
Q Consensus 635 ~~~ 637 (681)
+-.
T Consensus 282 ~K~ 284 (333)
T KOG0991|consen 282 VKN 284 (333)
T ss_pred HHh
Confidence 433
No 412
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=48.58 E-value=4.7e+02 Score=30.36 Aligned_cols=135 Identities=14% Similarity=0.215 Sum_probs=77.2
Q ss_pred cccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040136 463 GDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRG--SLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGL 540 (681)
Q Consensus 463 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 540 (681)
.+++....+.+.+.... ..-...-+..++.+|.+.+ ++++|+....++.+.+ ...-...+.-.+ -+-.+-
T Consensus 791 ~~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~----~~~ae~alkyl~---fLvDvn 862 (928)
T PF04762_consen 791 ESKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREED----PESAEEALKYLC---FLVDVN 862 (928)
T ss_pred ccHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcC----hHHHHHHHhHhe---eeccHH
Confidence 45666666666555543 1223445677888999888 8899999999888762 111111111111 122344
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040136 541 GLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKL 616 (681)
Q Consensus 541 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 616 (681)
++|+.++.. -|.. -.++-+-..+.|+.|=+-+++++.+. +|+..-|. |+ ...+++++|++.+.++
T Consensus 863 ~Ly~~ALG~---YDl~--Lal~VAq~SQkDPKEYLPfL~~L~~l--~~~~rry~--ID--~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 863 KLYDVALGT---YDLE--LALMVAQQSQKDPKEYLPFLQELQKL--PPLYRRYK--ID--DHLKRYEKALRHLSAC 927 (928)
T ss_pred HHHHHHhhh---cCHH--HHHHHHHHhccChHHHHHHHHHHHhC--Chhheeee--Hh--hhhCCHHHHHHHHHhh
Confidence 555555442 1222 23444555677888888888887763 44433222 22 2457899998877653
No 413
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=48.01 E-value=1.4e+02 Score=26.33 Aligned_cols=66 Identities=11% Similarity=0.111 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHCCCCCCH--HH-----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040136 536 VDKGLGLFEEMMRKGIKPSS--IS-----CNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMG 604 (681)
Q Consensus 536 ~~~A~~~~~~~~~~~~~p~~--~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 604 (681)
.+.|+.+|+.+.+....|.. .. --..+-.|.+.|.+++|.+++++..+. |+......-+....+..
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~K 157 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHcc
Confidence 68899999999886433311 11 123456788999999999999999873 45544444444444433
No 414
>PF13934 ELYS: Nuclear pore complex assembly
Probab=47.94 E-value=2.3e+02 Score=26.17 Aligned_cols=121 Identities=12% Similarity=-0.045 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHH
Q 040136 112 HTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVV 191 (681)
Q Consensus 112 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 191 (681)
|.........--+..++++++|.+.+ ..+...+.....++.++.+.|+.+.|+.+++.+. ..-.+......+
T Consensus 76 p~~~~~~~~g~W~LD~~~~~~A~~~L-----~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~ 147 (226)
T PF13934_consen 76 PPKYIKFIQGFWLLDHGDFEEALELL-----SHPSLIPWFPDKILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLY 147 (226)
T ss_pred CHHHHHHHHHHHHhChHhHHHHHHHh-----CCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHH
Q ss_pred HHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-ChhHHHHHHH
Q 040136 192 LDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVN-EVDSACSLLR 244 (681)
Q Consensus 192 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~A~~~~~ 244 (681)
+.. ..++...+|..+-+...+.. ....+..++..+.... +...+.+++.
T Consensus 148 ~~~-La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~~~~~~~~~~~Ll~ 197 (226)
T PF13934_consen 148 FVA-LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLEECARSGRLDELLS 197 (226)
T ss_pred HHH-HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHHHhhhhhHHHHHHh
No 415
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=47.13 E-value=60 Score=22.54 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=8.1
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 040136 527 IKALCNAGAVDKGLGLFEEM 546 (681)
Q Consensus 527 ~~~~~~~g~~~~A~~~~~~~ 546 (681)
+.+|...|++++|.++.+++
T Consensus 30 I~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 30 IYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 34444444444444444433
No 416
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=47.10 E-value=2.2e+02 Score=27.95 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 572 NTALEFLRDMIHRGLTPDI----VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISW 634 (681)
Q Consensus 572 ~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 634 (681)
++.+.++++++.. -|+. .-|-+++......|.++..+.+|++++..|-.|=...-..+++.
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~di 184 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDI 184 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 3444455544442 2332 22334444444445555555555555555444443333333333
No 417
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=46.69 E-value=2.1e+02 Score=30.93 Aligned_cols=93 Identities=13% Similarity=0.109 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 040136 256 VVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGL 335 (681)
Q Consensus 256 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 335 (681)
..|..-+..+...++.. ...++++..+-...+.....-++..|.+.|-.+.|.++.+.+-..-. ...-|..-+..+
T Consensus 373 ~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~ 448 (566)
T PF07575_consen 373 SLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWF 448 (566)
T ss_dssp TTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHH
Confidence 34444444444433222 44444444332233445556666777777777777777666544321 223466666667
Q ss_pred HhcCCHHHHHHHHhhcC
Q 040136 336 CRTGRVDEARALLNKIP 352 (681)
Q Consensus 336 ~~~g~~~~A~~~~~~~~ 352 (681)
.+.|+......+-..+.
T Consensus 449 ~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 449 IRAGDYSLVTRIADRLL 465 (566)
T ss_dssp H----------------
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 77777766666655543
No 418
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=46.52 E-value=2.6e+02 Score=26.46 Aligned_cols=81 Identities=15% Similarity=0.082 Sum_probs=42.6
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHH
Q 040136 324 DDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTF-NILIHGL 402 (681)
Q Consensus 324 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~ll~~~ 402 (681)
+......+...|.+.|++.+|+..|-.-..++...+..++. ....+ +.+.+...| ...+-.|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~----------------~~~~~-~~~~e~dlfi~RaVL~y 151 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLE----------------EWSTK-GYPSEADLFIARAVLQY 151 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHH----------------HHHHH-TSS--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHH----------------HHHHh-cCCcchhHHHHHHHHHH
Confidence 55667778888899999999888664433322222211222 11211 222222222 2223346
Q ss_pred HhcCChhHHHHHHHHHHhc
Q 040136 403 CKQRRFGSALELVNAMAVK 421 (681)
Q Consensus 403 ~~~~~~~~A~~~~~~~~~~ 421 (681)
.-.++...|...+....+.
T Consensus 152 L~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 152 LCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHTTBHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHH
Confidence 6678888888887776654
No 419
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=46.41 E-value=1.3e+02 Score=22.73 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=21.6
Q ss_pred hcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHH
Q 040136 337 RTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEA 375 (681)
Q Consensus 337 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 375 (681)
..|+.+.|.+++..+. ..+..|...+.++...|..+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4456666666666666 5555555656555555554433
No 420
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=45.41 E-value=3.4e+02 Score=27.48 Aligned_cols=52 Identities=17% Similarity=0.235 Sum_probs=37.0
Q ss_pred ccccHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHhC
Q 040136 462 TGDRIEEALGLYQDMLLEGVTANTV--TYNTLIHAFL--RRGSLHEAHKLVNDMLFR 514 (681)
Q Consensus 462 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~--~~g~~~~A~~~~~~~~~~ 514 (681)
...++..|..++..+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 467888999999998886 554444 4455555554 466788899998887665
No 421
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=45.19 E-value=5.4e+02 Score=29.73 Aligned_cols=89 Identities=6% Similarity=-0.055 Sum_probs=43.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCh
Q 040136 565 LCRTRKANTALEFLRDMIHRGLTPD--IVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGLF 641 (681)
Q Consensus 565 ~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 641 (681)
....++.+...++.+.+...-.... ......-+++|.-..++++|-++++.....-...+ ...+-...-++.-.++.
T Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 856 (932)
T PRK13184 777 ALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDR 856 (932)
T ss_pred HHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCch
Confidence 3334444444444444444311111 12233446667777777777777755444311112 23333333344455666
Q ss_pred hHHHHHHHHHHH
Q 040136 642 DDAFLILHKGVA 653 (681)
Q Consensus 642 ~~A~~~~~~~~~ 653 (681)
+-|...|....+
T Consensus 857 ~~~~~~~~~~~~ 868 (932)
T PRK13184 857 EAAKAHFSGCRE 868 (932)
T ss_pred hHHHHHHhhccc
Confidence 666666666653
No 422
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.83 E-value=4.6e+02 Score=30.52 Aligned_cols=137 Identities=14% Similarity=0.163 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCC---C--hhhHHH
Q 040136 151 LFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISP---T--VYTFGV 225 (681)
Q Consensus 151 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p---~--~~~~~~ 225 (681)
....+..+|...|...+|+..|.+.....| +.+ .....+....-+... ...|-.| . ..-|..
T Consensus 922 ~rfmlg~~yl~tge~~kAl~cF~~a~Sg~g-e~~-aL~~lv~~~~p~~~s-----------v~dG~t~s~e~t~lhYYlk 988 (1480)
T KOG4521|consen 922 IRFMLGIAYLGTGEPVKALNCFQSALSGFG-EGN-ALRKLVYFLLPKRFS-----------VADGKTPSEELTALHYYLK 988 (1480)
T ss_pred HHHhhheeeecCCchHHHHHHHHHHhhccc-cHH-HHHHHHHHhcCCCCc-----------hhcCCCCCchHHHHHHHHH
Confidence 334555668888999999999888873322 111 111111100000000 1122111 1 234666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHH
Q 040136 226 VMKALCMVNEVDSACSLLRDMTKHGCVPN----SVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDV----QTFNDVI 297 (681)
Q Consensus 226 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~----~~~~~li 297 (681)
+++.+-+-+-.+.+.++-...++.- +++ ..+++.+.+-....|.+.+|.+.+-. .||. .....++
T Consensus 989 v~rlle~hn~~E~vcQlA~~AIe~l-~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLRqlv 1061 (1480)
T KOG4521|consen 989 VVRLLEEHNHAEEVCQLAVKAIENL-PDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHHHHH
Confidence 7777777777788777776666531 221 23556666666667777666655433 2332 2344455
Q ss_pred HHHHhcCCHH
Q 040136 298 HGLCKVNRIH 307 (681)
Q Consensus 298 ~~~~~~~~~~ 307 (681)
..++..|.++
T Consensus 1062 ivLfecg~l~ 1071 (1480)
T KOG4521|consen 1062 IVLFECGELE 1071 (1480)
T ss_pred HHHHhccchH
Confidence 5555555543
No 423
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=44.70 E-value=1.4e+02 Score=22.79 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=14.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 596 LINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
+.......|++++|...+++.++.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 334445666666666666666553
No 424
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=44.51 E-value=1e+02 Score=24.40 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=9.7
Q ss_pred HHHHHHHHHhcCCHHHHHH
Q 040136 359 LNTVINGYVISGRFDEAKA 377 (681)
Q Consensus 359 ~~~l~~~~~~~g~~~~a~~ 377 (681)
|..|+..|...|.+++|++
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ 60 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALE 60 (108)
T ss_pred HHHHHHHHHccCccHHHHH
Confidence 4444445555555555555
No 425
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=44.38 E-value=3e+02 Score=26.47 Aligned_cols=84 Identities=17% Similarity=0.098 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----C--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 040136 500 SLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNA-----G--AVDKGLGLFEEMMRKGIKPSSISCNILINGLCR----T 568 (681)
Q Consensus 500 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 568 (681)
+..+|...|+++.+.|.++...+...+...|..- - +...|...|.++...+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 5667777777777666443222233333333332 1 2236777777777765 44444455544433 3
Q ss_pred CCHHHHHHHHHHHHHCCC
Q 040136 569 RKANTALEFLRDMIHRGL 586 (681)
Q Consensus 569 g~~~~A~~~~~~~~~~~~ 586 (681)
.+.++|...|++..+.|.
T Consensus 205 ~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred cCHHHHHHHHHHHHHCCC
Confidence 467788888888777654
No 426
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=43.72 E-value=85 Score=20.39 Aligned_cols=34 Identities=12% Similarity=0.183 Sum_probs=21.6
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040136 124 LGANKEFKVIDSVLLQMKEEGIICRESLFILIMK 157 (681)
Q Consensus 124 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 157 (681)
.-++|-..++..++++|.+.|+-.++..+..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456666667777777777776666666655543
No 427
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=43.47 E-value=1.6e+02 Score=23.19 Aligned_cols=10 Identities=20% Similarity=-0.014 Sum_probs=3.9
Q ss_pred HHhCCChHHH
Q 040136 159 YGRGGVPGQA 168 (681)
Q Consensus 159 ~~~~g~~~~A 168 (681)
+.++|++++|
T Consensus 50 LmNrG~Yq~A 59 (116)
T PF09477_consen 50 LMNRGDYQEA 59 (116)
T ss_dssp HHHTT-HHHH
T ss_pred HHhhHHHHHH
Confidence 3444444444
No 428
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.42 E-value=17 Score=35.01 Aligned_cols=118 Identities=16% Similarity=0.105 Sum_probs=78.4
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHH
Q 040136 531 CNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDI-VTYNSLINGLCKMGCIQEA 609 (681)
Q Consensus 531 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A 609 (681)
...|.++.|++.|...+... .+....|..-..++.+.+++..|++-+...++ +.||. .-|-.=..+-...|+|++|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHH
Confidence 45678899999988888874 34666777777888888889998888888776 45554 2333333445567889999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 610 LNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 610 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
...+....+.++.+....+ +=...-+.+..++-...+++..+
T Consensus 202 a~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHHH
Confidence 9999888887655544332 23333444555555555555444
No 429
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=42.39 E-value=51 Score=23.21 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 588 PDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFK 637 (681)
Q Consensus 588 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 637 (681)
|....++.++...++-.-.++++..+.++.+.| ..+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 344455666666665555666666666666655 2344444444444433
No 430
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=41.57 E-value=4.3e+02 Score=27.53 Aligned_cols=95 Identities=7% Similarity=0.028 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCR--TRKANTALEFLRDMIHRGLTPDIVTYNSLING 599 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 599 (681)
.-+.++.-+.+.|-..+|...+..+... ++|+...|..++..-.. .-+...+.++++.|... +..|+..|...+.-
T Consensus 462 l~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg~d~~lw~~y~~~ 539 (568)
T KOG2396|consen 462 LKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FGADSDLWMDYMKE 539 (568)
T ss_pred hhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hCCChHHHHHHHHh
Confidence 3355667777778888888888888776 45677777766654221 12366778888887765 22677777777776
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 040136 600 LCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~ 618 (681)
-...|+.+.+-.++.++.+
T Consensus 540 e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 540 ELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hccCCCcccccHHHHHHHH
Confidence 6678888777777666655
No 431
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=41.51 E-value=63 Score=32.92 Aligned_cols=106 Identities=13% Similarity=-0.003 Sum_probs=72.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 040136 491 LIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNG-LIKALCNAGAVDKGLGLFEEMMRKGIKPS-SISCNILINGLCRT 568 (681)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 568 (681)
-+..+...+.++.|..++.++++. .||-..|-. =..++.+.+++..|+.=+..+++.. |+ ...|-.-..++.+.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhH
Confidence 345567778899999999999987 454433333 3367888999999998888888764 33 23333334555666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 569 RKANTALEFLRDMIHRGLTPDIVTYNSLINGLCK 602 (681)
Q Consensus 569 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 602 (681)
+.+.+|+..|+.... +.|+..-....+.-|-.
T Consensus 86 ~~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 778888888887776 57887776666665543
No 432
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=41.42 E-value=1.8e+02 Score=23.07 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=16.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 257 VYQTLIHALSKSNRVSEALMLLEEMIL 283 (681)
Q Consensus 257 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 283 (681)
-|..++..|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 355666666666666666666666554
No 433
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=41.12 E-value=1.9e+02 Score=24.38 Aligned_cols=60 Identities=13% Similarity=0.021 Sum_probs=32.5
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040136 614 DKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKEI 674 (681)
Q Consensus 614 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 674 (681)
+.+.+.|+++... -..+++.+...+..-.|.++++++.+.+..-+..|.+.-|+.+...|
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344444443321 12345555555555666666666666555555566666666666665
No 434
>PRK13342 recombination factor protein RarA; Reviewed
Probab=40.79 E-value=4.2e+02 Score=27.22 Aligned_cols=46 Identities=24% Similarity=0.099 Sum_probs=26.9
Q ss_pred HHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 040136 489 NTLIHAFLR---RGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAG 534 (681)
Q Consensus 489 ~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 534 (681)
..++.++.+ .++.+.|+..+..|.+.|..|.......+..++...|
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 334444443 3677778888888887776666555444444444333
No 435
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=40.42 E-value=4.5e+02 Score=27.79 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhH---HHHHHHHHhcCCcCcHHHHHHHHHHC
Q 040136 152 FILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSY---NVVLDVLVAGNCHKVAPNLFYDMLSK 214 (681)
Q Consensus 152 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~A~~~~~~m~~~ 214 (681)
...|+.-|.+.+++++|..++..|.- .-. ....| +.+.+.+.++.--.+....++.++..
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW--~~~-g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNW--NTM-GEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCc--ccc-HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 34677789999999999999998872 111 12223 33344444554444444555555543
No 436
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.39 E-value=4.8e+02 Score=27.74 Aligned_cols=91 Identities=16% Similarity=0.115 Sum_probs=53.7
Q ss_pred HHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHH-hcCChhHHHHHHHHHHhCC---CCCChhhHHHHHHHHHh
Q 040136 192 LDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALC-MVNEVDSACSLLRDMTKHG---CVPNSVVYQTLIHALSK 267 (681)
Q Consensus 192 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~ 267 (681)
|..+.+.|++..|+++-+-+.+.+..-|......+|..|+ +..+++-.+++++.....+ .-||-.--.++...|..
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 4566778888888888887777765556666677777664 5566777777776664432 22433333344455554
Q ss_pred cCC---hhHHHHHHHHHH
Q 040136 268 SNR---VSEALMLLEEMI 282 (681)
Q Consensus 268 ~~~---~~~A~~~~~~m~ 282 (681)
... ...|...+.+..
T Consensus 429 ~~~~~~rqsa~~~l~qAl 446 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQAL 446 (665)
T ss_pred cCChhhHHHHHHHHHHHH
Confidence 443 334444444444
No 437
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=39.94 E-value=3.4e+02 Score=25.85 Aligned_cols=100 Identities=15% Similarity=0.188 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHH
Q 040136 431 TILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNT-LIHAFLRRGSLHEAHKLVN 509 (681)
Q Consensus 431 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~ 509 (681)
..++..+.+.|.+.+|+.+.+.+... +.+..-+++..+... =-.+|....+..++..-+.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~E-------------------lKk~DDK~~Li~vhllESKvyh~irnv~KskaSLT 189 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHE-------------------LKKYDDKINLITVHLLESKVYHEIRNVSKSKASLT 189 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH-------------------HHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHH
Confidence 45677888999999998877665432 111111222221111 1123334444444333333
Q ss_pred HHH----hCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHC
Q 040136 510 DML----FRGCPLDEITYNGLIKAL--CNAGAVDKGLGLFEEMMRK 549 (681)
Q Consensus 510 ~~~----~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~ 549 (681)
.+. ..-+||....-.-|+++- |...++..|..+|-+..+.
T Consensus 190 aArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 190 AARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred HHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 222 123555555544555543 3345677788877777663
No 438
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=39.74 E-value=3e+02 Score=25.26 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=32.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHH----HHhcCCHHHHHHHHHH
Q 040136 397 ILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDG----FCKEGQLEKANIIINE 452 (681)
Q Consensus 397 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~----~~~~g~~~~A~~~~~~ 452 (681)
.-|......|+++.|.+....+...-+..|...+..|... ..+.|..++|++..+.
T Consensus 69 ~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 69 LQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4456677888888888888777544334444333333221 3456666666665543
No 439
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=39.68 E-value=3e+02 Score=25.22 Aligned_cols=101 Identities=19% Similarity=0.158 Sum_probs=56.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 040136 516 CPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKP---SSISC--NILINGLCRTRKANTALEFLRDMIHRGLTPDI 590 (681)
Q Consensus 516 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 590 (681)
+.+...-+|.|+--|.-...+.+|-..|..- .|+.| +..++ ..-+......|+.++|++..+++...-+.-|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 3555556666666665555566665555432 23333 33333 34566677888888888888776543223333
Q ss_pred HHHHHHHH----HHHhcCCHHHHHHHHHHHHH
Q 040136 591 VTYNSLIN----GLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 591 ~~~~~l~~----~~~~~g~~~~A~~~~~~~~~ 618 (681)
..+-.|.. =+.+.|..++|+++++.=..
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 23332222 13466777777777765544
No 440
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=39.08 E-value=9.5e+02 Score=30.81 Aligned_cols=147 Identities=12% Similarity=0.022 Sum_probs=93.8
Q ss_pred cCCCChHHHHHHHHHhhh-CCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHH
Q 040136 89 RLPLDVDTSMEIFTWAGS-QEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQ 167 (681)
Q Consensus 89 ~~~~~~~~al~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 167 (681)
.+.+.+.+|+-.|+.... ..........|..+-..|+..++++....+...-.. +++... -+......|++..
T Consensus 1394 frc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~e~~g~~~d 1467 (2382)
T KOG0890|consen 1394 FRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEHEASGNWAD 1467 (2382)
T ss_pred HhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHHHhhccHHH
Confidence 357889999988887311 111111223344444589999999998887764111 223333 3444557899999
Q ss_pred HHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHH-HHHHHhcCChhHHHHHHH
Q 040136 168 ATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVV-MKALCMVNEVDSACSLLR 244 (681)
Q Consensus 168 A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~g~~~~A~~~~~ 244 (681)
|...|+++. ..+ ++.+..++-++......|.++.++...+-..... .+....++.+ ..+-.+.+++|.....+.
T Consensus 1468 a~~Cye~~~-q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1468 AAACYERLI-QKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHhh-cCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999998 232 3447778888888888888888887666655442 2233333332 344467888887777766
No 441
>PRK09462 fur ferric uptake regulator; Provisional
Probab=38.94 E-value=1.7e+02 Score=24.80 Aligned_cols=59 Identities=8% Similarity=0.156 Sum_probs=35.1
Q ss_pred hCCCCCCCHHHHHHHHHHHHcC-CCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCh
Q 040136 106 SQEGYCHTFDVYYVLIDKLGAN-KEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVP 165 (681)
Q Consensus 106 ~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 165 (681)
+..|++.+..-. .++..+... +..-.|.++++.+.+.++..+..+....+..+...|-.
T Consensus 9 ~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 9 KKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 344555554333 334444443 45667777777777777666666666666666666654
No 442
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=38.93 E-value=3.5e+02 Score=25.78 Aligned_cols=100 Identities=18% Similarity=0.263 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--
Q 040136 518 LDEITYNGLIKALCNAGAVDKGLGLFEEMMR----KGIKPSSISCNI-LINGLCRTRKANTALEFLRDMIHRGLTPDI-- 590 (681)
Q Consensus 518 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-- 590 (681)
-...++..+..-|++.++.+.+.++.++..+ .|.+.|+....+ |.-.|....-+++-++..+.|.++|...+.
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrN 192 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhh
Confidence 3456777888899999999998888776654 366666544322 333445555578888999999998765443
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 591 --VTYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 591 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
.+|..+. +....++.+|-.++-.....
T Consensus 193 RyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 193 RYKVYKGIF--KMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred hHHHHHHHH--HHHHHhhHHHHHHHHHHhcc
Confidence 3333221 23445777877777666553
No 443
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=38.78 E-value=6e+02 Score=28.39 Aligned_cols=110 Identities=10% Similarity=0.039 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040136 536 VDKGLGLFEEMMRKGIKPSSISCNILINGL-CRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFD 614 (681)
Q Consensus 536 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 614 (681)
++.|...|.+.......+............ .-.++.+.++.+++.+...|..--...|-..++.-...|+...+..+++
T Consensus 442 F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R 521 (881)
T KOG0128|consen 442 FNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLR 521 (881)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHH
Confidence 344555555444432222333333333332 2357788899999888876433112245555555567788888888888
Q ss_pred HHHHCCCCCCH--HHHHHHHHHHHhcCChhHHH
Q 040136 615 KLQAEGIYPDA--VTYNTLISWHFKEGLFDDAF 645 (681)
Q Consensus 615 ~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~ 645 (681)
.+...-..|+. .++..+...-...|.++.+.
T Consensus 522 ~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~ 554 (881)
T KOG0128|consen 522 KAYSQVVDPEDALEVLEFFRRFEREYGTLESFD 554 (881)
T ss_pred HHHhcCcCchhHHHHHHHHHHHHhccccHHHHh
Confidence 87765445542 23333334444455555443
No 444
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=38.37 E-value=1.8e+02 Score=25.41 Aligned_cols=60 Identities=8% Similarity=-0.002 Sum_probs=36.3
Q ss_pred hCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChH
Q 040136 106 SQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPG 166 (681)
Q Consensus 106 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 166 (681)
+..|++.+..-. .++..+...++.-.|.++++.+.+.++..+..+....+..+.+.|-+.
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 344655555433 344445555556677777777777776666666666666666666543
No 445
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.87 E-value=6.4e+02 Score=28.44 Aligned_cols=54 Identities=7% Similarity=0.008 Sum_probs=35.4
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcH
Q 040136 119 VLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMK 176 (681)
Q Consensus 119 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 176 (681)
.+=+.|...|+++.|.++-..-++ .-..++..-+..|.+.+++..|.++|.++.
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~~p~----~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIARTRPD----ALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHHHHhcchHHHHHHhccCCHH----HHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 344567777888887776544311 123455555667778888888888887775
No 446
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=37.23 E-value=70 Score=30.59 Aligned_cols=30 Identities=33% Similarity=0.457 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 040136 258 YQTLIHALSKSNRVSEALMLLEEMILMGCT 287 (681)
Q Consensus 258 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 287 (681)
|+..|+...+.|++++|++++++.++.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 356666666666666666666666666644
No 447
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=37.19 E-value=7.2e+02 Score=28.86 Aligned_cols=167 Identities=8% Similarity=-0.018 Sum_probs=102.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHCCCCCCHHHHHHH
Q 040136 483 ANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDK-GLGLFEEMMRKGIKPSSISCNIL 561 (681)
Q Consensus 483 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~~~~~l 561 (681)
+|...-...+.++.+.+..+. +..... .++..+-.....++...+..+. +...+..+.+ .++...-...
T Consensus 726 ~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA 795 (897)
T PRK13800 726 PDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAA 795 (897)
T ss_pred CCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHH
Confidence 355555666666666554432 222222 4567777777777777765433 3455555554 3466777778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 040136 562 INGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLF 641 (681)
Q Consensus 562 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 641 (681)
+.++...|..+.+...+..+++. ++..+-...+.++...+. +++...+..+.+ .|+..+-...+.++.+.+.-
T Consensus 796 ~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~ 868 (897)
T PRK13800 796 LAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTRWPGD 868 (897)
T ss_pred HHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCC
Confidence 88888888876665556666543 455555566777777765 456677666665 56777777777777775434
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 642 DDAFLILHKGVANGFVPNDATWYILVRN 669 (681)
Q Consensus 642 ~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 669 (681)
..+...+..+++ .+|..+-.....+
T Consensus 869 ~~a~~~L~~al~---D~d~~Vr~~A~~a 893 (897)
T PRK13800 869 PAARDALTTALT---DSDADVRAYARRA 893 (897)
T ss_pred HHHHHHHHHHHh---CCCHHHHHHHHHH
Confidence 567777777775 3455444444333
No 448
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=37.03 E-value=6.5e+02 Score=28.27 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=18.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 599 GLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLIS 633 (681)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 633 (681)
..-+..+...++..|..|+... ....|...|+.
T Consensus 797 ~l~~lr~~a~~i~~~a~~I~yR--mps~t~~rL~~ 829 (835)
T KOG2168|consen 797 KLDRLRDQARAIVMMAAMIPYR--MPSQTNSRLVQ 829 (835)
T ss_pred HHHHHHHHHHHHHHHHHhcccc--CChHHHHHHHH
Confidence 3344555677777787777753 23344444444
No 449
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=36.95 E-value=1.8e+02 Score=21.79 Aligned_cols=60 Identities=22% Similarity=0.355 Sum_probs=34.3
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 040136 205 PNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVS 272 (681)
Q Consensus 205 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 272 (681)
..++..+.+.|+- |-...-..-+...+.++|.++++.+..+| ..+|.....++...|...
T Consensus 19 ~~v~~~L~~~~Vl----t~~~~e~I~~~~tr~~q~~~LLd~L~~RG----~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 19 KYLWDHLLSRGVF----TPDMIEEIQAAGSRRDQARQLLIDLETRG----KQAFPAFLSALRETGQTD 78 (84)
T ss_pred HHHHHHHHhcCCC----CHHHHHHHHcCCCHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCchH
Confidence 3455555655432 22222223334456777777777777777 666777777766665443
No 450
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=35.59 E-value=77 Score=30.31 Aligned_cols=30 Identities=30% Similarity=0.445 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040136 593 YNSLINGLCKMGCIQEALNLFDKLQAEGIY 622 (681)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 622 (681)
|+.-|....+.||+++|+.+++++.+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345555555556666666666666555543
No 451
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=35.48 E-value=90 Score=18.32 Aligned_cols=12 Identities=8% Similarity=0.418 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 040136 607 QEALNLFDKLQA 618 (681)
Q Consensus 607 ~~A~~~~~~~~~ 618 (681)
+.|..+|+..+.
T Consensus 4 dRAR~IyeR~v~ 15 (32)
T PF02184_consen 4 DRARSIYERFVL 15 (32)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 452
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=35.36 E-value=6.5e+02 Score=27.79 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHhCC-CCCCHHH-----HHH--HHHHHHhcCChhHHHHHHHHHHhc
Q 040136 370 GRFDEAKAIFYDSMLSVG-CIPDVFT-----FNI--LIHGLCKQRRFGSALELVNAMAVK 421 (681)
Q Consensus 370 g~~~~a~~~~~~~~~~~~-~~p~~~~-----~~~--ll~~~~~~~~~~~A~~~~~~~~~~ 421 (681)
|+-++|+..+.....+.| +.||... |.- +-..|...+..+.|..+|++.-+.
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev 316 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV 316 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc
Confidence 555556654544444443 3444322 111 112233455566777777776554
No 453
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.34 E-value=2e+02 Score=27.04 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=10.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 040136 596 LINGLCKMGCIQEALNLFDKL 616 (681)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~ 616 (681)
+..-|.+.|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444555555555555544
No 454
>PRK09857 putative transposase; Provisional
Probab=34.88 E-value=3.6e+02 Score=26.07 Aligned_cols=63 Identities=17% Similarity=0.166 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040136 560 ILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYP 623 (681)
Q Consensus 560 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 623 (681)
.++......++.++-.++++.+.+. .+.......++.+-+.+.|.-++++++.++|...|+.+
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 3333333445544445555444443 22222223344444444454445555555555555443
No 455
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=34.80 E-value=1.1e+02 Score=21.64 Aligned_cols=48 Identities=15% Similarity=0.346 Sum_probs=25.7
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 253 PNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLC 301 (681)
Q Consensus 253 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 301 (681)
|....++-++..+++..-.++++..+.+..+.|. .+..+|..-++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3445556666666666666666666666666552 34445544444443
No 456
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=33.76 E-value=1.6e+02 Score=23.31 Aligned_cols=37 Identities=11% Similarity=-0.049 Sum_probs=16.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 632 ISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRN 669 (681)
Q Consensus 632 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 669 (681)
++.+.++.-.++|+++++-|.+.| ..+....+.|-..
T Consensus 68 iD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~ 104 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSI 104 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 334444445555555555555544 3333333333333
No 457
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=33.70 E-value=89 Score=17.32 Aligned_cols=12 Identities=8% Similarity=0.379 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 040136 607 QEALNLFDKLQA 618 (681)
Q Consensus 607 ~~A~~~~~~~~~ 618 (681)
+.|..+|++++.
T Consensus 4 ~~~r~i~e~~l~ 15 (33)
T smart00386 4 ERARKIYERALE 15 (33)
T ss_pred HHHHHHHHHHHH
Confidence 333444444333
No 458
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=33.69 E-value=2.9e+02 Score=23.30 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhcCC-hhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHh
Q 040136 393 FTFNILIHGLCKQRR-FGSALELVNAMAVKGCEPNIVTYTILVDGFCK 439 (681)
Q Consensus 393 ~~~~~ll~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 439 (681)
..|..++.+..+... --.+..+|..+.+.+.+.+...|..++.++.+
T Consensus 80 ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 80 SSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred chHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 344444444443333 22344445555544445555555555555443
No 459
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=33.60 E-value=4.6e+02 Score=25.57 Aligned_cols=82 Identities=17% Similarity=-0.036 Sum_probs=49.8
Q ss_pred cCcHHHHHHHHHHCCC----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 040136 201 HKVAPNLFYDMLSKGI----SPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALM 276 (681)
Q Consensus 201 ~~~A~~~~~~m~~~~~----~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 276 (681)
.+.|.+.|++....+. ..+......++....+.|+.+.-..+++..... ++......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 5677778888777522 234445555666666667666555555555543 356667778888888888877778
Q ss_pred HHHHHHHCC
Q 040136 277 LLEEMILMG 285 (681)
Q Consensus 277 ~~~~m~~~~ 285 (681)
+++.....+
T Consensus 223 ~l~~~l~~~ 231 (324)
T PF11838_consen 223 LLDLLLSND 231 (324)
T ss_dssp HHHHHHCTS
T ss_pred HHHHHcCCc
Confidence 888777643
No 460
>PRK09857 putative transposase; Provisional
Probab=33.16 E-value=3.1e+02 Score=26.55 Aligned_cols=66 Identities=15% Similarity=0.088 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 040136 593 YNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPN 659 (681)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 659 (681)
+..++.-....++.++-.++++.+.+. ++......-+++.-+...|.-++++++.++|...|+..+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 445555555667777777777777664 333344455677777788888889999999999987665
No 461
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=33.13 E-value=1.2e+02 Score=24.10 Aligned_cols=43 Identities=16% Similarity=-0.069 Sum_probs=23.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040136 632 ISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKEI 674 (681)
Q Consensus 632 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 674 (681)
++.+...+..-.|.++++.+.+.+...+..|.+..|+.+...|
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 3344444444555666666665554555556566666665555
No 462
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.60 E-value=6.4e+02 Score=26.89 Aligned_cols=51 Identities=14% Similarity=0.157 Sum_probs=22.0
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 040136 531 CNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLC-RTRKANTALEFLRDM 581 (681)
Q Consensus 531 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 581 (681)
.+.|-+..|.++-+-+.+....-|+.....+|+.|+ ++.+++-.+++++..
T Consensus 353 ~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 353 AQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344445555544444444433333444444444432 333444444444443
No 463
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.60 E-value=32 Score=33.27 Aligned_cols=92 Identities=12% Similarity=0.000 Sum_probs=60.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHH
Q 040136 496 LRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSS-ISCNILINGLCRTRKANTA 574 (681)
Q Consensus 496 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A 574 (681)
...|.++.|++.+...++.+ ++....|.-=.+++.+.+....|++-++..++.+ ||. .-|-.-..+-.-.|++++|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHH
Confidence 35577888888888777764 5566666666677777788888887777777642 332 2333333344456788888
Q ss_pred HHHHHHHHHCCCCCCH
Q 040136 575 LEFLRDMIHRGLTPDI 590 (681)
Q Consensus 575 ~~~~~~~~~~~~~p~~ 590 (681)
...+....+.++.+..
T Consensus 202 a~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 202 AHDLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHHHhccccHHH
Confidence 8888887776655444
No 464
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.39 E-value=5.8e+02 Score=26.81 Aligned_cols=99 Identities=12% Similarity=0.110 Sum_probs=56.9
Q ss_pred HHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHH
Q 040136 132 VIDSVLLQMK-EEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYD 210 (681)
Q Consensus 132 ~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 210 (681)
...+.+..+. ..|+..++.+...++.. ..|+...|+.+++++. ..+ ....++..+ .+
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i-~~~--~~~it~~~V-----------------~~ 241 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAI-VFT--DSKLTGVKI-----------------RK 241 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHH-HhC--CCCcCHHHH-----------------HH
Confidence 3344444433 35666677777666654 6689999999988765 221 111222222 12
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh
Q 040136 211 MLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNS 255 (681)
Q Consensus 211 m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 255 (681)
+. |.. +...+..++++....+....|..+++.+.+.|..|..
T Consensus 242 ~l--g~~-~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~ 283 (484)
T PRK14956 242 MI--GYH-GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYK 283 (484)
T ss_pred Hh--CCC-CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHH
Confidence 22 322 5555666666665545556788888888888855543
No 465
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=32.25 E-value=1.1e+02 Score=24.64 Aligned_cols=48 Identities=17% Similarity=-0.094 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcc
Q 040136 629 NTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKEINM 676 (681)
Q Consensus 629 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~ 676 (681)
..+++.+...+..-.|.++++.+.+.|...+..|.+.-|+.+.+.|-.
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 345666666666778888888888877777778888888888887743
No 466
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=32.22 E-value=2.4e+02 Score=26.42 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q 040136 592 TYNSLINGLCKMGCIQEALNLF 613 (681)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~ 613 (681)
+...+..++.+.|+.+..+.+-
T Consensus 220 ~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 220 VLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 3344444555555555544443
No 467
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=32.12 E-value=4.9e+02 Score=25.40 Aligned_cols=110 Identities=14% Similarity=0.076 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHhCCC----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040136 236 VDSACSLLRDMTKHGC----VPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAK 311 (681)
Q Consensus 236 ~~~A~~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 311 (681)
.+.|.+.|+.....+. ..++.....++....+.|+.+....+++.... ..+......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 4678888888877422 23455556666677777776665555555543 3467777888888888889888889
Q ss_pred HHHHHHHCC-CCCCcccHHHHHHHHHhcCC--HHHHHHHHhh
Q 040136 312 LVDRMLVRG-FTPDDITYGVLMHGLCRTGR--VDEARALLNK 350 (681)
Q Consensus 312 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~ 350 (681)
+++.....+ ++ +... ..++..+...+. .+.+.+.+..
T Consensus 223 ~l~~~l~~~~v~-~~d~-~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 223 LLDLLLSNDKVR-SQDI-RYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHCTSTS--TTTH-HHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHcCCcccc-cHHH-HHHHHHHhcCChhhHHHHHHHHHH
Confidence 998888754 33 3333 334444442333 3555555543
No 468
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=31.75 E-value=3e+02 Score=22.90 Aligned_cols=21 Identities=5% Similarity=0.123 Sum_probs=10.0
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 040136 633 SWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~ 653 (681)
-++++.|.++.++++.+.+++
T Consensus 79 vg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 79 VGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHHhhHHHHHHHHHHHHh
Confidence 344444444444444444444
No 469
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=31.64 E-value=5.8e+02 Score=26.07 Aligned_cols=174 Identities=9% Similarity=-0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHh
Q 040136 115 DVYYVLIDKLGANKEFKVIDSVLLQMKEEG-------IICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRS 187 (681)
Q Consensus 115 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 187 (681)
.+...+++..+-.||+..|.++++.+.-.. +.....++..+.-+|.-.+++.+|.+.|..+. ...
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL--------~yi 194 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL--------LYI 194 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH
Q ss_pred HHHHHHHHHhcCCcCcHHHHHHHHHH--------CCCCCChhhHHHHHHHHH------hcCChhHHHHHHHHHHhCCCCC
Q 040136 188 YNVVLDVLVAGNCHKVAPNLFYDMLS--------KGISPTVYTFGVVMKALC------MVNEVDSACSLLRDMTKHGCVP 253 (681)
Q Consensus 188 ~~~ll~~~~~~~~~~~A~~~~~~m~~--------~~~~p~~~~~~~ll~~~~------~~g~~~~A~~~~~~~~~~~~~~ 253 (681)
...--....+..+++...+.-++|.. .....|..+-..+=.-|. +.|+.+.-.++|.....+=+.|
T Consensus 195 ~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~~acPKFIsp 274 (404)
T PF10255_consen 195 QRTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFSFACPKFISP 274 (404)
T ss_pred HHhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhhCCCccCC
Q ss_pred C-hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 040136 254 N-SVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDV 296 (681)
Q Consensus 254 ~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l 296 (681)
. +..+.................-.++++...-.-|+...|..|
T Consensus 275 ~~pp~~~~~~~~~~~e~~~~Ql~~Fl~eV~~q~~l~~lRSyLKL 318 (404)
T PF10255_consen 275 VSPPDYDGPSQNKNKEPYRRQLKLFLDEVKQQQKLPTLRSYLKL 318 (404)
T ss_pred CCCCCcccccchhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHh
No 470
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=31.08 E-value=7.5e+02 Score=29.35 Aligned_cols=154 Identities=18% Similarity=0.145 Sum_probs=94.2
Q ss_pred HHhcCCHHHHHH------HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCC--CCCHHHHHHH
Q 040136 495 FLRRGSLHEAHK------LVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMR-----KGI--KPSSISCNIL 561 (681)
Q Consensus 495 ~~~~g~~~~A~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~--~p~~~~~~~l 561 (681)
....|.+.+|.+ ++......-.+.....|..+...+.+.|+.++|+.+-....- .|. .-+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 344555665555 555433333356677788888888999999999877655421 122 2234556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC-----C-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC--CCCHHH
Q 040136 562 INGLCRTRKANTALEFLRDMIHR-----G-LTPDI-VTYNSLINGLCKMGCIQEALNLFDKLQAE-----GI--YPDAVT 627 (681)
Q Consensus 562 ~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~--~p~~~~ 627 (681)
.-.+...++...|+..+.+.... | ..|.. .+.+.+-..+...++++.|.++.+.+... |- .....+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 66666777888888888776652 2 23443 44444444445567889999998888765 21 123455
Q ss_pred HHHHHHHHHhcCChhHHHHHH
Q 040136 628 YNTLISWHFKEGLFDDAFLIL 648 (681)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~ 648 (681)
+..+.......+++..|....
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHHH
Confidence 666666666666666555433
No 471
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.03 E-value=6.5e+02 Score=26.47 Aligned_cols=144 Identities=8% Similarity=-0.085 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 040136 93 DVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLL 172 (681)
Q Consensus 93 ~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 172 (681)
+.+.....++......++..+..+...++.... |+...+...++.+....... +-...+......-..+....+.
T Consensus 177 ~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~--GdlR~aln~Le~l~~~~~~~---It~e~V~~~l~~~~~~~i~~li 251 (472)
T PRK14962 177 SDELIIKRLQEVAEAEGIEIDREALSFIAKRAS--GGLRDALTMLEQVWKFSEGK---ITLETVHEALGLIPIEVVRDYI 251 (472)
T ss_pred cHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHcCCCHHHHHHHH
Q ss_pred HHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChh------HHHHHHHHH
Q 040136 173 LDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVD------SACSLLRDM 246 (681)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~------~A~~~~~~~ 246 (681)
+.+. .++++.|+.++.+|...|..|....-..+..++-..|..+ -+...++..
T Consensus 252 ~si~---------------------~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~ 310 (472)
T PRK14962 252 NAIF---------------------NGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNIL 310 (472)
T ss_pred HHHH---------------------cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHH
Q ss_pred HhCCCCCChhhHHHHH
Q 040136 247 TKHGCVPNSVVYQTLI 262 (681)
Q Consensus 247 ~~~~~~~~~~~~~~li 262 (681)
.+.|++-......-++
T Consensus 311 ~~i~~~e~~~~l~~~~ 326 (472)
T PRK14962 311 REIKFAEEKRLVCKLG 326 (472)
T ss_pred HHhCCcchHHHHHHHH
No 472
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=30.69 E-value=7.7e+02 Score=27.37 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 040136 500 SLHEAHKLVNDML-FRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK 549 (681)
Q Consensus 500 ~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (681)
..++....+.... ..|+..+......++... .|++..|+.+++++...
T Consensus 179 s~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~ 227 (709)
T PRK08691 179 TAQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIAL 227 (709)
T ss_pred CHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHh
Confidence 3455555555444 346777777776666544 58888898888887653
No 473
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=30.32 E-value=2.4e+02 Score=21.23 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=21.6
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 241 SLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMI 282 (681)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 282 (681)
++|+.....|+..|..+|..+++.+.-+--.+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455555555555555555555555544444455555555544
No 474
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=30.28 E-value=1.4e+02 Score=23.74 Aligned_cols=47 Identities=6% Similarity=0.148 Sum_probs=29.5
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChH
Q 040136 120 LIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPG 166 (681)
Q Consensus 120 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 166 (681)
++..+...+..-.|.++++.+.+.++..+..+....++.+.+.|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 34445555555667777777777666556666666666666666543
No 475
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=30.28 E-value=4.5e+02 Score=27.87 Aligned_cols=103 Identities=8% Similarity=0.015 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 040136 93 DVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLL 172 (681)
Q Consensus 93 ~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 172 (681)
+.++....+.......|...+......++. ...|++..|...++++...+......+-...+......-..+...+++
T Consensus 188 s~~el~~~L~~i~~~egi~ie~eAL~~Ia~--~s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~ 265 (507)
T PRK06645 188 SFEEIFKLLEYITKQENLKTDIEALRIIAY--KSEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFV 265 (507)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHH
Q ss_pred HHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCC
Q 040136 173 LDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISP 218 (681)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p 218 (681)
+.+. .|+..+|+.+++++...|..|
T Consensus 266 ~ai~---------------------~~d~~~Al~~l~~L~~~g~~~ 290 (507)
T PRK06645 266 EYII---------------------HRETEKAINLINKLYGSSVNL 290 (507)
T ss_pred HHHH---------------------cCCHHHHHHHHHHHHHcCCCH
No 476
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=30.12 E-value=2.7e+02 Score=29.91 Aligned_cols=91 Identities=21% Similarity=0.197 Sum_probs=61.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 040136 525 GLIKALCNAGAVDKGLGLFEEMMRK--GIKPSSISCNILINGLCRTRKAN------TALEFLRDMIHRGLTPDIVTYNSL 596 (681)
Q Consensus 525 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~p~~~~~~~l 596 (681)
+|+.+|...|++-.+.++++..... |-+.=...+|..++...+.|.++ .|.+++++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7899999999999999999988875 33333567888888888888754 3444444443 55678888877
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 040136 597 INGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 597 ~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
+++-..--+-.-..-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7755443333334444554444
No 477
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=29.77 E-value=4.6e+02 Score=24.31 Aligned_cols=102 Identities=13% Similarity=0.265 Sum_probs=64.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-C-----------CCCCHHHHHHHH
Q 040136 495 FLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK-G-----------IKPSSISCNILI 562 (681)
Q Consensus 495 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-----------~~p~~~~~~~l~ 562 (681)
|.+..+.+--.++.+-....+++-+.....+++ +...|+..+|+..++.-... | -.|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 334444443444444444455555555555554 45689999999888876542 1 146666667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 563 NGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGL 600 (681)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 600 (681)
..| ..+++++|.+++.++-+.|+.|... .+.+..++
T Consensus 247 ~~~-~~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 247 QAC-LKRNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred HHH-HhccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 654 5678999999999999999887653 33444443
No 478
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=29.58 E-value=8.4e+02 Score=28.98 Aligned_cols=131 Identities=18% Similarity=-0.001 Sum_probs=64.7
Q ss_pred HHHHHHHHcCCCchHHHH------HHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHh----hcCC--CCCH
Q 040136 118 YVLIDKLGANKEFKVIDS------VLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKS----VYGC--QPTF 185 (681)
Q Consensus 118 ~~l~~~~~~~g~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~--~~~~ 185 (681)
..........|.+.++.+ ++...-..-.+.....|..|.+.+-+.|+.++|+..-.+... ..|. +-+.
T Consensus 936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence 334445556666666666 444332222234556677788888888888887766543320 0111 1122
Q ss_pred HhHHHHHHHHHhcCCcCcHHHHHHHHHHC-----C--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040136 186 RSYNVVLDVLVAGNCHKVAPNLFYDMLSK-----G--ISPTVYTFGVVMKALCMVNEVDSACSLLRDMTK 248 (681)
Q Consensus 186 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-----~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 248 (681)
..|..+.-.....+....|...+.+.... | .+|...+++.+-..+...++.+.|.+.++.+..
T Consensus 1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33333333333444555666555554442 1 122233334443334444556666666655543
No 479
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.53 E-value=2.7e+02 Score=21.58 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcH
Q 040136 131 KVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMK 176 (681)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 176 (681)
...++.++++...+....+-.+..|.-.|.+.|+.+.|.+-|+.-+
T Consensus 54 ~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEK 99 (121)
T COG4259 54 AALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEK 99 (121)
T ss_pred HHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhh
Confidence 3445677777777766777888889999999999999999998765
No 480
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=29.53 E-value=3.2e+02 Score=22.43 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=28.5
Q ss_pred ChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChh
Q 040136 164 VPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVY 221 (681)
Q Consensus 164 ~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 221 (681)
++.-|.+++.+... .+ .....++.+.+..-.-.+.++..++......|..+
T Consensus 4 Np~IA~~~l~~l~~----s~---~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~ef 54 (126)
T PF10155_consen 4 NPNIAIEILVKLIN----SP---NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEF 54 (126)
T ss_pred cHHHHHHHHHHHcC----Cc---hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHH
Confidence 44555555555541 12 24555666666666667777777776665444433
No 481
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=29.36 E-value=2e+02 Score=20.01 Aligned_cols=47 Identities=19% Similarity=0.126 Sum_probs=22.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HhcCCHHHHHHH
Q 040136 566 CRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGL-----CKMGCIQEALNL 612 (681)
Q Consensus 566 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~ 612 (681)
...|++=+|-++++.+=.....+....+..+|+.. .+.|+...|..+
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 34566666666666654332223344455554433 245555555544
No 482
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=29.24 E-value=6.4e+02 Score=25.86 Aligned_cols=59 Identities=10% Similarity=0.125 Sum_probs=30.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 525 GLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHR 584 (681)
Q Consensus 525 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 584 (681)
.|+.-|...|+..+|.+..+++---. -.....+.+++.+.-+.|+-..-+++++..-..
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmPf-FhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s 572 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMPF-FHHEVVKKALVMVMEKKGDSTMILDLLKECFKS 572 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCCc-chHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 34455555666666665555442211 113345555666666666655555555555443
No 483
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=29.18 E-value=3.8e+02 Score=23.35 Aligned_cols=59 Identities=12% Similarity=0.150 Sum_probs=30.2
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 040136 583 HRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFD 642 (681)
Q Consensus 583 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 642 (681)
+.|++.+..-. .++..+...++.-.|.++++.+.+.+..++..|...-++.+...|-+.
T Consensus 19 ~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 19 QRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 34555444332 333444444455566666666666554445544444455555555443
No 484
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=29.10 E-value=2.9e+02 Score=21.86 Aligned_cols=78 Identities=10% Similarity=0.017 Sum_probs=47.3
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 040136 91 PLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATR 170 (681)
Q Consensus 91 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 170 (681)
.-..++|..+.+|+....+ -...+--..+..+..+|++++| +..-... ..|+...|. +-+-.+.|..+++..
T Consensus 19 ~HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~-~~pdL~p~~--AL~a~klGL~~~~e~ 90 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEA---LLLPQCH-CYPDLEPWA--ALCAWKLGLASALES 90 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHH---HHHHTTS---GGGHHHH--HHHHHHCT-HHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHH---HHhcccC-CCccHHHHH--HHHHHhhccHHHHHH
Confidence 4577899999999877544 1122222334567899999999 2222222 223444444 444558999999999
Q ss_pred HHHHcH
Q 040136 171 LLLDMK 176 (681)
Q Consensus 171 ~~~~~~ 176 (681)
.+.++.
T Consensus 91 ~l~rla 96 (116)
T PF09477_consen 91 RLTRLA 96 (116)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 999877
No 485
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.04 E-value=6.2e+02 Score=25.64 Aligned_cols=16 Identities=13% Similarity=0.297 Sum_probs=9.5
Q ss_pred CCHHHHHHHHHHHHHC
Q 040136 604 GCIQEALNLFDKLQAE 619 (681)
Q Consensus 604 g~~~~A~~~~~~~~~~ 619 (681)
+++....++++++...
T Consensus 318 sky~~cl~~L~~~k~~ 333 (466)
T KOG0686|consen 318 SKYASCLELLREIKPR 333 (466)
T ss_pred hhHHHHHHHHHHhccc
Confidence 4566666666665543
No 486
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=28.94 E-value=3.3e+02 Score=22.35 Aligned_cols=42 Identities=24% Similarity=0.282 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHH
Q 040136 608 EALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGLFDDAFLILH 649 (681)
Q Consensus 608 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 649 (681)
+..++|..|.++|+--. ...|......+-..|++.+|.++++
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35666777776654433 3345556666666777777776665
No 487
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.70 E-value=9e+02 Score=27.41 Aligned_cols=105 Identities=16% Similarity=0.075 Sum_probs=67.3
Q ss_pred HhcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHH---------------hcCCHHHHHHHHHHHHHCCCCCC
Q 040136 566 CRTRKANTALEFLRDMIHR------GLTPDIVTYNSLINGLC---------------KMGCIQEALNLFDKLQAEGIYPD 624 (681)
Q Consensus 566 ~~~g~~~~A~~~~~~~~~~------~~~p~~~~~~~l~~~~~---------------~~g~~~~A~~~~~~~~~~~~~p~ 624 (681)
...|++.+|++.|+.++-. +-.-+..-...++..++ ..+..+.+.++........+.|-
T Consensus 1002 tt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~ 1081 (1202)
T KOG0292|consen 1002 TTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPM 1081 (1202)
T ss_pred hccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcH
Confidence 4579999999999998753 11223333444444442 12345555555555555567776
Q ss_pred HH--HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHH
Q 040136 625 AV--TYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATW-YILVRNL 670 (681)
Q Consensus 625 ~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~-~~ll~~~ 670 (681)
.. +....+..+.+.+++..|..+-.++++.+-.|....- +..+.++
T Consensus 1082 H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a~ 1130 (1202)
T KOG0292|consen 1082 HRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQAA 1130 (1202)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Confidence 44 5567788899999999999999999997765555433 3443333
No 488
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=28.52 E-value=8.1e+02 Score=27.23 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CC----------CCHHHHHHHHHHHH
Q 040136 536 VDKGLGLFEEMMR-KGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRG---LT----------PDIVTYNSLINGLC 601 (681)
Q Consensus 536 ~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~----------p~~~~~~~l~~~~~ 601 (681)
.++....+....+ .|+..+......++... .|+...|+.+++++...| +. .+......++.++.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~ 257 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII 257 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH
Confidence 4555666665555 47777777777777554 699999999998877642 11 11222334444444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC
Q 040136 602 KMGCIQEALNLFDKLQAEGIYPD 624 (681)
Q Consensus 602 ~~g~~~~A~~~~~~~~~~~~~p~ 624 (681)
. ++...++.+++.+...|+.+.
T Consensus 258 ~-~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 258 N-QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred c-CCHHHHHHHHHHHHHhCCCHH
Confidence 3 777788888888877765443
No 489
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.51 E-value=2.2e+02 Score=20.94 Aligned_cols=23 Identities=13% Similarity=0.099 Sum_probs=10.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHCC
Q 040136 633 SWHFKEGLFDDAFLILHKGVANG 655 (681)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~~g 655 (681)
+.+.++.--++|+++++-+.++|
T Consensus 39 D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 39 DFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhC
Confidence 33444444445555555555444
No 490
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=28.24 E-value=5e+02 Score=24.26 Aligned_cols=58 Identities=16% Similarity=-0.047 Sum_probs=40.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 595 SLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 595 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
.+-+++...|++-++++.-.+.+.. .+-|...|..-.++....-+.++|..=|..+++
T Consensus 235 Ny~QC~L~~~e~yevleh~seiL~~-~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 235 NYCQCLLKKEEYYEVLEHCSEILRH-HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 3445666777787787777777775 234566777777777777777888888888776
No 491
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=27.64 E-value=4.8e+02 Score=28.24 Aligned_cols=91 Identities=15% Similarity=0.280 Sum_probs=61.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 040136 490 TLIHAFLRRGSLHEAHKLVNDMLFRG--CPLDEITYNGLIKALCNAGAVD------KGLGLFEEMMRKGIKPSSISCNIL 561 (681)
Q Consensus 490 ~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~p~~~~~~~l 561 (681)
+|+.+|...|++..+.++++.+...+ -..-...+|..++...+.|.++ .|...+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78999999999999999999988763 2233456788888888888754 3334444433 44477888887
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 040136 562 INGLCRTRKANTALEFLRDMIH 583 (681)
Q Consensus 562 ~~~~~~~g~~~~A~~~~~~~~~ 583 (681)
..+-...-.-.-.+-++.+.+.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7765554343444455555554
No 492
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=27.59 E-value=8.7e+02 Score=26.88 Aligned_cols=23 Identities=9% Similarity=0.346 Sum_probs=13.7
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHH
Q 040136 532 NAGAVDKGLGLFEEMMRKGIKPSSI 556 (681)
Q Consensus 532 ~~g~~~~A~~~~~~~~~~~~~p~~~ 556 (681)
..+..+.|..+|+++-+. .|+..
T Consensus 299 Da~s~~~a~~WyrkaFev--eP~~~ 321 (1226)
T KOG4279|consen 299 DAESLNHAIEWYRKAFEV--EPLEY 321 (1226)
T ss_pred chhhHHHHHHHHHHHhcc--Cchhh
Confidence 344566777777777663 44443
No 493
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=27.53 E-value=3.8e+02 Score=22.65 Aligned_cols=81 Identities=17% Similarity=0.226 Sum_probs=44.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040136 558 CNILINGLCRTRKANTALEFLRDMIHRG-----LTPDIVTYNSLINGLCKMGC-IQEALNLFDKLQAEGIYPDAVTYNTL 631 (681)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l 631 (681)
.++++.-....++..-.+.+++.+.-.. -..+...|++++.+.....- ---+..+|.-|.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3555655566666666666666653210 01233456666666654443 33455566666665566666666666
Q ss_pred HHHHHhc
Q 040136 632 ISWHFKE 638 (681)
Q Consensus 632 ~~~~~~~ 638 (681)
++++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 6665554
No 494
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=27.24 E-value=3.7e+02 Score=25.99 Aligned_cols=120 Identities=13% Similarity=-0.022 Sum_probs=0.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 040136 154 LIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMV 233 (681)
Q Consensus 154 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 233 (681)
.++..+.+.++.......+..+. ....-...+..+...|++..|+++..+..+.--.-...+...=+..-...
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~-------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e 175 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK-------TVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQE 175 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHH
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 040136 234 NEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEE 280 (681)
Q Consensus 234 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 280 (681)
-...--..+=..+.+.-..-|+..|..+..+|.-.|+...+.+-+..
T Consensus 176 ~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 176 TLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
No 495
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=26.87 E-value=5.5e+02 Score=24.31 Aligned_cols=154 Identities=15% Similarity=0.117 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHCCCCCCHHHHHHH
Q 040136 487 TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAV-----DKGLGLFEEMMRKGIKPSSISCNIL 561 (681)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-----~~A~~~~~~~~~~~~~p~~~~~~~l 561 (681)
....++..+.+.+....|..+.+.+... +-=......|+......... ......+....+- +..-...+..+
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~l--~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~l-l~~f~~~l~Iv 160 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRSL--PYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISL-LQEFPEYLEIV 160 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhccC--CCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHH-HHcCcchHHHH
Confidence 3466778888888888898888887643 33445555555543322211 1222333333321 11112233444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC-----CHHHHHHHHHHH
Q 040136 562 INGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEG-IYP-----DAVTYNTLISWH 635 (681)
Q Consensus 562 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p-----~~~~~~~l~~~~ 635 (681)
+++..+.. .+.|..+... . +++ ..|++-|.+.|+++.|-.++--+...+ ... +...-..++...
T Consensus 161 v~C~RKtE-----~~~W~~LF~~-l-g~P---~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a 230 (258)
T PF07064_consen 161 VNCARKTE-----VRYWPYLFDY-L-GSP---RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMA 230 (258)
T ss_pred HHHHHhhH-----HHHHHHHHHh-c-CCH---HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHH
Confidence 44443332 3444444442 1 232 256778888999999988877776542 111 223334567777
Q ss_pred HhcCChhHHHHHHHHHHH
Q 040136 636 FKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 636 ~~~g~~~~A~~~~~~~~~ 653 (681)
...|+|+-+.++.+=+..
T Consensus 231 ~~~~~w~Lc~eL~RFL~~ 248 (258)
T PF07064_consen 231 LESGDWDLCFELVRFLKA 248 (258)
T ss_pred HhcccHHHHHHHHHHHHH
Confidence 888999988888776665
No 496
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=26.80 E-value=9.6e+02 Score=27.09 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 040136 501 LHEAHKLVNDMLF-RGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK 549 (681)
Q Consensus 501 ~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (681)
.++..+.++.+.+ .|+..+......+... ..|++..|+.+++++...
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~ 227 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAY 227 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHh
Confidence 4556666666543 4666666666555543 368899999988876643
No 497
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=26.78 E-value=5.2e+02 Score=24.03 Aligned_cols=40 Identities=13% Similarity=0.123 Sum_probs=18.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHH
Q 040136 398 LIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGF 437 (681)
Q Consensus 398 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 437 (681)
++..+.+.|+++++...++++...+...+..-.+.|..+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 3444455555555555555555554444444444444443
No 498
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.67 E-value=6.4e+02 Score=26.81 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=20.4
Q ss_pred HcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcH
Q 040136 142 EEGIICRESLFILIMKYYGRGGVPGQATRLLLDMK 176 (681)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 176 (681)
+.|+..++.+...++.. ..|+...|...++++.
T Consensus 190 ~egi~i~~~Al~~ia~~--s~GdlR~aln~Lekl~ 222 (504)
T PRK14963 190 AEGREAEPEALQLVARL--ADGAMRDAESLLERLL 222 (504)
T ss_pred HcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHH
Confidence 34655566666555544 3577777777777655
No 499
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=26.54 E-value=4.7e+02 Score=23.38 Aligned_cols=19 Identities=21% Similarity=0.120 Sum_probs=10.4
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 040136 299 GLCKVNRIHEAAKLVDRML 317 (681)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~ 317 (681)
.....|++++|.+-++++.
T Consensus 38 ~~~H~~~~eeA~~~l~~a~ 56 (204)
T COG2178 38 FLLHRGDFEEAEKKLKKAS 56 (204)
T ss_pred HHHHhccHHHHHHHHHHHH
Confidence 3445556666666555554
No 500
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=26.21 E-value=3.1e+02 Score=21.58 Aligned_cols=23 Identities=13% Similarity=0.443 Sum_probs=15.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 040136 489 NTLIHAFLRRGSLHEAHKLVNDM 511 (681)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~~ 511 (681)
..++.-|...|+.++|...+.++
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh
Confidence 34556677778888888888775
Done!