Query 040136
Match_columns 681
No_of_seqs 666 out of 3570
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 08:20:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040136.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040136hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 8.7E-40 3E-44 354.7 43.1 498 112-667 82-591 (597)
2 2xpi_A Anaphase-promoting comp 100.0 5.3E-39 1.8E-43 348.6 39.6 481 84-635 90-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 3.6E-26 1.2E-30 233.2 47.4 249 395-674 138-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 4.7E-26 1.6E-30 232.3 47.3 379 226-639 5-387 (388)
5 4g26_A Pentatricopeptide repea 100.0 4.2E-29 1.4E-33 258.4 24.2 204 471-674 11-224 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.6E-28 5.5E-33 254.0 23.7 206 132-338 8-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 1E-23 3.5E-28 223.9 37.9 443 150-661 7-483 (514)
8 2gw1_A Mitochondrial precursor 99.9 5.8E-23 2E-27 218.0 40.3 453 114-626 6-483 (514)
9 3fp2_A TPR repeat-containing p 99.9 6.7E-22 2.3E-26 211.1 42.8 430 186-653 26-490 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 4.2E-21 1.4E-25 199.9 41.4 394 204-678 11-443 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 4.4E-21 1.5E-25 199.8 38.3 341 167-562 10-370 (450)
12 3fp2_A TPR repeat-containing p 99.9 3.6E-21 1.2E-25 205.4 37.9 441 114-619 25-491 (537)
13 2xm6_A Protein corresponding t 99.9 6.6E-17 2.3E-21 169.7 50.3 362 205-620 27-433 (490)
14 1xi4_A Clathrin heavy chain; a 99.9 6.8E-16 2.3E-20 168.8 57.8 547 56-675 952-1578(1630)
15 2xm6_A Protein corresponding t 99.9 1.4E-16 4.9E-21 167.1 50.1 365 238-656 25-434 (490)
16 3ieg_A DNAJ homolog subfamily 99.9 9.4E-18 3.2E-22 168.6 39.6 326 289-672 2-352 (359)
17 3ieg_A DNAJ homolog subfamily 99.8 1.9E-17 6.4E-22 166.4 37.9 327 254-636 2-351 (359)
18 1xi4_A Clathrin heavy chain; a 99.8 1.2E-14 4.1E-19 159.2 57.6 409 111-602 982-1413(1630)
19 3hym_B Cell division cycle pro 99.8 2.6E-17 8.8E-22 163.3 33.0 289 358-678 24-323 (330)
20 2ooe_A Cleavage stimulation fa 99.8 4.7E-16 1.6E-20 164.9 44.0 419 182-653 10-491 (530)
21 3hym_B Cell division cycle pro 99.8 4.1E-17 1.4E-21 161.9 32.1 292 288-642 20-322 (330)
22 2ooe_A Cleavage stimulation fa 99.8 1.3E-15 4.5E-20 161.5 42.5 427 112-619 11-492 (530)
23 1fch_A Peroxisomal targeting s 99.8 6.2E-17 2.1E-21 163.4 28.7 300 337-653 37-358 (368)
24 1fch_A Peroxisomal targeting s 99.8 6.1E-17 2.1E-21 163.4 25.7 254 91-351 38-311 (368)
25 1b89_A Protein (clathrin heavy 99.8 9E-17 3.1E-21 157.9 25.3 195 151-377 34-228 (449)
26 1b89_A Protein (clathrin heavy 99.8 9.8E-17 3.4E-21 157.7 25.5 290 161-507 15-304 (449)
27 4eqf_A PEX5-related protein; a 99.8 4E-17 1.4E-21 164.6 23.5 274 356-651 65-353 (365)
28 4eqf_A PEX5-related protein; a 99.8 1.4E-16 4.9E-21 160.5 24.3 257 391-677 64-344 (365)
29 4g1t_A Interferon-induced prot 99.7 4.9E-15 1.7E-19 155.0 35.0 366 220-655 51-460 (472)
30 3cv0_A Peroxisome targeting si 99.7 9.5E-16 3.2E-20 151.8 27.1 276 359-653 24-314 (327)
31 3mkr_A Coatomer subunit epsilo 99.7 1.9E-15 6.5E-20 145.9 27.1 272 335-648 9-288 (291)
32 3mkr_A Coatomer subunit epsilo 99.7 2.9E-15 1E-19 144.6 27.9 258 364-662 7-270 (291)
33 3spa_A Mtrpol, DNA-directed RN 99.7 2.1E-17 7.1E-22 175.2 12.1 153 182-339 124-286 (1134)
34 3cv0_A Peroxisome targeting si 99.7 2E-15 6.7E-20 149.5 25.5 262 328-618 24-314 (327)
35 4g1t_A Interferon-induced prot 99.7 3.1E-14 1.1E-18 148.9 33.4 387 111-550 48-460 (472)
36 3spa_A Mtrpol, DNA-directed RN 99.7 4.1E-17 1.4E-21 172.9 11.3 119 519-637 126-248 (1134)
37 3e4b_A ALGK; tetratricopeptide 99.7 2.4E-14 8.1E-19 147.7 26.5 372 228-653 11-420 (452)
38 3e4b_A ALGK; tetratricopeptide 99.6 2.4E-14 8.2E-19 147.7 24.5 280 120-419 9-314 (452)
39 2pl2_A Hypothetical conserved 99.6 3.1E-14 1.1E-18 131.1 22.7 200 424-652 2-212 (217)
40 3uq3_A Heat shock protein STI1 99.6 7.4E-14 2.5E-18 132.7 26.2 241 392-667 5-253 (258)
41 3uq3_A Heat shock protein STI1 99.6 2.7E-13 9.2E-18 128.8 26.7 225 357-619 6-236 (258)
42 2pl2_A Hypothetical conserved 99.6 1.3E-13 4.6E-18 126.8 22.4 201 389-618 2-213 (217)
43 1ouv_A Conserved hypothetical 99.6 4.5E-12 1.5E-16 121.5 33.8 224 391-655 5-252 (273)
44 2ho1_A Type 4 fimbrial biogene 99.6 7.4E-13 2.5E-17 125.4 26.2 210 427-665 37-247 (252)
45 4e6h_A MRNA 3'-END-processing 99.6 9.6E-11 3.3E-15 124.7 44.2 457 164-670 47-584 (679)
46 3u4t_A TPR repeat-containing p 99.6 8.5E-13 2.9E-17 126.6 26.1 242 394-662 5-256 (272)
47 2vq2_A PILW, putative fimbrial 99.6 1.5E-12 5E-17 120.8 26.4 210 426-664 7-219 (225)
48 1ouv_A Conserved hypothetical 99.6 1.3E-11 4.3E-16 118.4 32.7 224 355-620 5-252 (273)
49 2h6f_A Protein farnesyltransfe 99.6 1.4E-12 4.9E-17 130.0 26.7 248 393-672 98-365 (382)
50 2ho1_A Type 4 fimbrial biogene 99.5 3.9E-12 1.3E-16 120.3 27.9 207 392-627 37-244 (252)
51 2q7f_A YRRB protein; TPR, prot 99.5 5E-13 1.7E-17 125.7 21.2 199 427-653 23-221 (243)
52 3u4t_A TPR repeat-containing p 99.5 1.8E-12 6.2E-17 124.3 25.0 246 359-634 6-264 (272)
53 2h6f_A Protein farnesyltransfe 99.5 2.2E-12 7.6E-17 128.6 26.2 245 114-366 97-363 (382)
54 1xnf_A Lipoprotein NLPI; TPR, 99.5 3.5E-13 1.2E-17 129.5 18.6 248 90-348 17-269 (275)
55 2q7f_A YRRB protein; TPR, prot 99.5 1.4E-12 4.6E-17 122.7 21.8 211 391-631 22-233 (243)
56 2vq2_A PILW, putative fimbrial 99.5 6.8E-12 2.3E-16 116.2 26.3 210 391-628 7-218 (225)
57 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.2E-12 4.1E-17 125.7 21.4 218 161-385 17-243 (275)
58 4e6h_A MRNA 3'-END-processing 99.5 4E-10 1.4E-14 120.0 41.5 153 93-248 47-222 (679)
59 3vtx_A MAMA; tetratricopeptide 99.5 5.5E-12 1.9E-16 112.8 23.1 173 484-662 4-176 (184)
60 4a1s_A PINS, partner of inscut 99.5 2E-12 6.8E-17 132.4 20.6 276 359-654 51-372 (411)
61 3sf4_A G-protein-signaling mod 99.5 3.3E-12 1.1E-16 130.4 21.3 307 290-643 9-365 (406)
62 3sf4_A G-protein-signaling mod 99.5 5.6E-12 1.9E-16 128.7 22.0 300 357-676 10-363 (406)
63 3ro2_A PINS homolog, G-protein 99.4 5.8E-12 2E-16 124.8 20.9 276 359-654 8-332 (338)
64 2ond_A Cleavage stimulation fa 99.4 1.7E-10 6E-15 112.5 30.1 219 409-654 33-270 (308)
65 3vtx_A MAMA; tetratricopeptide 99.4 3.9E-11 1.3E-15 107.2 23.3 171 426-625 4-174 (184)
66 4a1s_A PINS, partner of inscut 99.4 1.1E-11 3.8E-16 126.8 20.9 97 221-318 49-154 (411)
67 3ro2_A PINS homolog, G-protein 99.4 2.7E-11 9.1E-16 119.9 21.9 98 522-619 225-332 (338)
68 4abn_A Tetratricopeptide repea 99.4 1.7E-11 5.6E-16 127.3 20.9 215 408-651 84-318 (474)
69 2ond_A Cleavage stimulation fa 99.4 4.9E-10 1.7E-14 109.3 29.6 219 373-619 33-270 (308)
70 3ulq_A Response regulator aspa 99.4 4.1E-11 1.4E-15 121.1 22.6 129 522-653 226-367 (383)
71 4abn_A Tetratricopeptide repea 99.4 5.2E-11 1.8E-15 123.5 23.7 203 466-677 84-309 (474)
72 3nf1_A KLC 1, kinesin light ch 99.4 6.1E-12 2.1E-16 123.1 15.5 245 392-653 27-306 (311)
73 3ulq_A Response regulator aspa 99.4 1.4E-10 4.8E-15 117.2 24.9 239 261-548 109-367 (383)
74 3nf1_A KLC 1, kinesin light ch 99.3 1.6E-11 5.5E-16 120.1 14.8 244 358-619 29-307 (311)
75 3as5_A MAMA; tetratricopeptide 99.3 2.9E-10 9.8E-15 101.4 21.0 166 485-654 8-173 (186)
76 1hz4_A MALT regulatory protein 99.3 3E-09 1E-13 107.0 30.8 296 361-676 19-352 (373)
77 3q15_A PSP28, response regulat 99.3 2.5E-10 8.7E-15 115.1 22.7 235 398-653 107-364 (378)
78 4i17_A Hypothetical protein; T 99.3 3E-10 1E-14 105.4 21.5 182 483-670 5-223 (228)
79 4gyw_A UDP-N-acetylglucosamine 99.3 1.8E-10 6.1E-15 124.3 21.8 165 484-653 8-173 (723)
80 1hz4_A MALT regulatory protein 99.3 3.4E-09 1.2E-13 106.6 28.1 199 120-318 20-243 (373)
81 3q15_A PSP28, response regulat 99.2 7.3E-09 2.5E-13 104.3 29.6 235 361-618 106-364 (378)
82 3edt_B KLC 2, kinesin light ch 99.2 1.5E-10 5.1E-15 111.3 15.2 200 438-653 12-280 (283)
83 4gyw_A UDP-N-acetylglucosamine 99.2 6.2E-10 2.1E-14 120.1 21.3 165 426-618 8-173 (723)
84 3as5_A MAMA; tetratricopeptide 99.2 1.5E-09 5E-14 96.7 20.4 165 428-619 9-173 (186)
85 4i17_A Hypothetical protein; T 99.1 3.5E-09 1.2E-13 98.1 20.4 196 112-319 5-209 (228)
86 3edt_B KLC 2, kinesin light ch 99.1 1.1E-09 3.8E-14 105.2 16.7 199 404-618 13-280 (283)
87 1qqe_A Vesicular transport pro 99.1 4.2E-09 1.4E-13 101.6 18.2 217 407-661 32-274 (292)
88 3qky_A Outer membrane assembly 99.1 6.7E-09 2.3E-13 98.5 19.0 171 483-660 13-228 (261)
89 3urz_A Uncharacterized protein 99.1 1E-08 3.5E-13 93.2 18.9 176 486-668 5-198 (208)
90 2fo7_A Synthetic consensus TPR 99.0 1.6E-08 5.6E-13 84.3 17.8 128 523-653 4-131 (136)
91 3mv2_B Coatomer subunit epsilo 99.0 1.9E-07 6.6E-12 88.0 26.3 172 483-662 98-288 (310)
92 2fo7_A Synthetic consensus TPR 99.0 2.8E-08 9.4E-13 82.9 17.8 130 487-619 3-132 (136)
93 3urz_A Uncharacterized protein 99.0 2.3E-08 8E-13 90.8 18.4 140 488-633 57-198 (208)
94 1qqe_A Vesicular transport pro 99.0 2.5E-08 8.6E-13 96.1 19.3 199 399-618 44-268 (292)
95 3rjv_A Putative SEL1 repeat pr 99.0 4.5E-08 1.6E-12 89.2 19.9 176 469-656 5-199 (212)
96 3mv2_B Coatomer subunit epsilo 99.0 5.6E-08 1.9E-12 91.6 20.5 141 204-349 85-235 (310)
97 3qky_A Outer membrane assembly 99.0 2.5E-08 8.5E-13 94.5 18.3 209 391-642 14-249 (261)
98 2uy1_A Cleavage stimulation fa 98.9 3.2E-06 1.1E-10 87.4 34.1 125 521-653 287-412 (493)
99 3rjv_A Putative SEL1 repeat pr 98.9 1.4E-07 4.7E-12 85.9 20.9 176 410-620 4-198 (212)
100 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.4E-07 4.8E-12 86.9 20.4 168 484-655 3-214 (225)
101 3qou_A Protein YBBN; thioredox 98.9 4.7E-08 1.6E-12 93.9 17.4 165 483-653 115-283 (287)
102 2r5s_A Uncharacterized protein 98.9 2.3E-08 7.9E-13 88.1 13.9 161 487-653 8-172 (176)
103 2uy1_A Cleavage stimulation fa 98.9 2E-06 6.8E-11 88.9 30.4 216 272-548 196-412 (493)
104 2pzi_A Probable serine/threoni 98.9 2.4E-08 8.3E-13 108.3 16.8 181 438-640 402-583 (681)
105 4ga2_A E3 SUMO-protein ligase 98.9 1.1E-08 3.8E-13 87.3 11.1 140 529-674 6-148 (150)
106 4ga2_A E3 SUMO-protein ligase 98.9 9.2E-09 3.1E-13 87.8 10.4 145 491-640 3-149 (150)
107 3dra_A Protein farnesyltransfe 98.9 1.7E-06 5.7E-11 82.6 26.1 237 401-666 41-299 (306)
108 3qou_A Protein YBBN; thioredox 98.8 2.1E-07 7.1E-12 89.3 20.1 165 112-282 115-282 (287)
109 2ifu_A Gamma-SNAP; membrane fu 98.8 7.3E-08 2.5E-12 93.7 16.7 199 405-617 4-222 (307)
110 2pzi_A Probable serine/threoni 98.8 3.8E-08 1.3E-12 106.8 15.9 168 91-266 404-579 (681)
111 2vsy_A XCC0866; transferase, g 98.8 9.6E-08 3.3E-12 101.9 18.7 152 464-619 3-157 (568)
112 2yhc_A BAMD, UPF0169 lipoprote 98.8 5.5E-07 1.9E-11 82.8 20.3 185 114-320 4-214 (225)
113 3dra_A Protein farnesyltransfe 98.8 2.5E-06 8.5E-11 81.4 24.8 225 87-318 42-286 (306)
114 2r5s_A Uncharacterized protein 98.8 1.5E-07 5.2E-12 82.8 15.3 161 117-282 9-171 (176)
115 2vsy_A XCC0866; transferase, g 98.7 2.6E-07 8.9E-12 98.5 18.7 154 498-655 2-158 (568)
116 4gco_A Protein STI-1; structur 98.7 2.7E-07 9.4E-12 75.7 14.3 100 557-660 15-114 (126)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.7 8.5E-07 2.9E-11 80.7 18.6 133 485-624 6-153 (213)
118 2ifu_A Gamma-SNAP; membrane fu 98.7 6.2E-07 2.1E-11 87.0 18.5 193 369-582 4-222 (307)
119 3u3w_A Transcriptional activat 98.7 2.3E-06 8E-11 82.3 21.6 165 489-653 79-265 (293)
120 2qfc_A PLCR protein; TPR, HTH, 98.7 2.4E-06 8.3E-11 82.2 21.2 168 486-653 76-265 (293)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2.1E-06 7.2E-11 78.1 19.1 128 522-654 8-150 (213)
122 1a17_A Serine/threonine protei 98.6 1.8E-06 6E-11 74.9 16.9 128 522-652 15-144 (166)
123 4gco_A Protein STI-1; structur 98.6 9.5E-07 3.2E-11 72.5 14.0 97 521-619 14-110 (126)
124 3gw4_A Uncharacterized protein 98.6 5.5E-07 1.9E-11 81.3 13.9 157 496-653 3-175 (203)
125 3u3w_A Transcriptional activat 98.6 4.5E-06 1.5E-10 80.3 20.7 199 111-318 43-265 (293)
126 1a17_A Serine/threonine protei 98.6 2.5E-06 8.7E-11 73.8 16.9 131 485-618 13-145 (166)
127 3q7a_A Farnesyltransferase alp 98.6 4.1E-05 1.4E-09 73.7 26.4 226 405-659 67-335 (349)
128 3gyz_A Chaperone protein IPGC; 98.6 9.3E-07 3.2E-11 74.9 13.2 96 521-618 37-132 (151)
129 2e2e_A Formate-dependent nitri 98.6 3.2E-07 1.1E-11 80.8 10.7 121 496-619 21-144 (177)
130 3gyz_A Chaperone protein IPGC; 98.6 8.5E-07 2.9E-11 75.1 12.6 103 554-661 35-138 (151)
131 4f3v_A ESX-1 secretion system 98.6 3.5E-06 1.2E-10 78.3 17.7 139 522-665 104-246 (282)
132 2vyi_A SGTA protein; chaperone 98.5 2.4E-06 8.1E-11 70.4 14.8 94 523-618 15-108 (131)
133 2qfc_A PLCR protein; TPR, HTH, 98.5 1.8E-05 6.2E-10 76.0 23.1 173 428-618 76-265 (293)
134 2vyi_A SGTA protein; chaperone 98.5 3.1E-06 1E-10 69.7 15.4 121 554-677 11-131 (131)
135 2vgx_A Chaperone SYCD; alterna 98.5 2.9E-07 9.8E-12 78.2 9.1 94 558-653 24-117 (148)
136 2c2l_A CHIP, carboxy terminus 98.5 4.1E-07 1.4E-11 86.9 11.2 195 426-654 3-199 (281)
137 1na0_A Designed protein CTPR3; 98.5 4.2E-06 1.4E-10 68.1 15.9 26 593-618 80-105 (125)
138 1na0_A Designed protein CTPR3; 98.5 4.2E-06 1.4E-10 68.2 15.8 116 555-673 9-124 (125)
139 2lni_A Stress-induced-phosphop 98.5 2.7E-06 9.2E-11 70.4 14.7 97 520-618 16-112 (133)
140 1p5q_A FKBP52, FK506-binding p 98.5 2.5E-06 8.6E-11 83.7 16.6 129 522-652 149-292 (336)
141 3dss_A Geranylgeranyl transfer 98.5 4.8E-05 1.7E-09 72.9 24.8 246 403-674 40-323 (331)
142 3q7a_A Farnesyltransferase alp 98.5 9.4E-05 3.2E-09 71.2 26.5 171 122-298 62-250 (349)
143 4gcn_A Protein STI-1; structur 98.5 1.8E-06 6E-11 71.0 12.4 103 558-663 11-119 (127)
144 2e2e_A Formate-dependent nitri 98.5 1.2E-06 4.1E-11 77.1 12.1 119 532-653 22-143 (177)
145 2lni_A Stress-induced-phosphop 98.5 2.8E-06 9.7E-11 70.3 13.8 119 553-675 14-133 (133)
146 3gw4_A Uncharacterized protein 98.5 2E-06 6.7E-11 77.6 13.6 136 484-619 25-176 (203)
147 3upv_A Heat shock protein STI1 98.5 5.6E-06 1.9E-10 67.9 15.0 95 557-653 6-100 (126)
148 4f3v_A ESX-1 secretion system 98.5 2.3E-06 8E-11 79.5 13.9 190 90-285 18-238 (282)
149 4gcn_A Protein STI-1; structur 98.5 2.5E-06 8.6E-11 70.0 12.7 103 522-627 10-118 (127)
150 2vgx_A Chaperone SYCD; alterna 98.4 9E-07 3.1E-11 75.1 10.1 99 519-619 20-118 (148)
151 2fbn_A 70 kDa peptidylprolyl i 98.4 6.8E-07 2.3E-11 80.4 8.8 158 495-655 14-187 (198)
152 2c2l_A CHIP, carboxy terminus 98.4 1.8E-06 6.2E-11 82.3 12.2 95 222-318 6-100 (281)
153 3upv_A Heat shock protein STI1 98.4 8.9E-06 3.1E-10 66.6 14.7 96 521-618 5-100 (126)
154 1elw_A TPR1-domain of HOP; HOP 98.4 1.2E-05 4E-10 64.7 14.9 96 556-653 5-100 (118)
155 1p5q_A FKBP52, FK506-binding p 98.4 9.7E-06 3.3E-10 79.5 16.9 132 484-618 146-293 (336)
156 2xcb_A PCRH, regulatory protei 98.3 3.8E-06 1.3E-10 70.6 11.3 98 519-618 17-114 (142)
157 1elr_A TPR2A-domain of HOP; HO 98.3 6.9E-06 2.4E-10 67.6 12.7 95 558-653 7-107 (131)
158 3dss_A Geranylgeranyl transfer 98.3 0.00017 5.8E-09 69.1 23.8 157 501-664 90-274 (331)
159 1elw_A TPR1-domain of HOP; HOP 98.3 2.9E-05 9.9E-10 62.3 15.8 95 522-618 6-100 (118)
160 2dba_A Smooth muscle cell asso 98.3 2.1E-05 7.3E-10 66.3 15.5 97 554-653 27-127 (148)
161 1elr_A TPR2A-domain of HOP; HO 98.3 8.7E-06 3E-10 66.9 11.8 109 522-633 6-120 (131)
162 3sz7_A HSC70 cochaperone (SGT) 98.3 8.8E-06 3E-10 70.4 12.1 100 518-619 9-108 (164)
163 2xcb_A PCRH, regulatory protei 98.3 7.2E-06 2.5E-10 68.9 11.2 95 487-583 20-114 (142)
164 3q49_B STIP1 homology and U bo 98.3 3.4E-05 1.2E-09 64.1 15.3 97 520-618 9-105 (137)
165 3ro3_A PINS homolog, G-protein 98.2 6.6E-06 2.3E-10 70.7 10.9 132 522-653 11-157 (164)
166 3q49_B STIP1 homology and U bo 98.2 2.9E-05 9.9E-10 64.5 14.2 100 553-654 7-106 (137)
167 3sz7_A HSC70 cochaperone (SGT) 98.2 3.2E-05 1.1E-09 66.8 14.7 100 483-584 9-108 (164)
168 2fbn_A 70 kDa peptidylprolyl i 98.2 2.6E-05 8.9E-10 69.8 14.4 132 485-619 38-186 (198)
169 1hxi_A PEX5, peroxisome target 98.2 1.4E-05 4.7E-10 64.9 11.2 91 560-653 22-113 (121)
170 2dba_A Smooth muscle cell asso 98.2 5.9E-05 2E-09 63.5 15.7 97 519-618 27-127 (148)
171 2kck_A TPR repeat; tetratricop 98.2 1.8E-05 6.1E-10 62.9 11.7 97 556-654 7-106 (112)
172 4b4t_Q 26S proteasome regulato 98.2 4.9E-05 1.7E-09 77.7 17.8 209 434-653 11-244 (434)
173 2kck_A TPR repeat; tetratricop 98.1 3.3E-05 1.1E-09 61.3 12.0 97 221-319 7-106 (112)
174 2xev_A YBGF; tetratricopeptide 98.1 5.1E-05 1.8E-09 62.2 13.2 90 527-618 9-104 (129)
175 1hxi_A PEX5, peroxisome target 98.1 2.8E-05 9.6E-10 63.0 11.3 91 491-583 23-113 (121)
176 3ro3_A PINS homolog, G-protein 98.1 2.1E-05 7.1E-10 67.5 11.1 135 485-619 9-158 (164)
177 3rkv_A Putative peptidylprolyl 98.1 4E-05 1.4E-09 66.0 12.6 62 591-653 64-125 (162)
178 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 3.7E-05 1.3E-09 78.9 14.2 87 556-645 318-405 (457)
179 4b4t_Q 26S proteasome regulato 98.0 0.00017 5.7E-09 73.7 18.1 198 121-318 11-244 (434)
180 1dce_A Protein (RAB geranylger 98.0 0.00029 9.8E-09 74.0 19.9 173 499-677 43-243 (567)
181 3k9i_A BH0479 protein; putativ 98.0 9.4E-06 3.2E-10 65.5 6.7 85 568-653 3-89 (117)
182 1dce_A Protein (RAB geranylger 98.0 0.00031 1.1E-08 73.8 19.7 171 468-643 47-244 (567)
183 2xev_A YBGF; tetratricopeptide 98.0 0.00017 5.9E-09 58.9 14.5 90 561-653 8-104 (129)
184 1wao_1 Serine/threonine protei 98.0 3.1E-05 1.1E-09 79.8 12.0 118 494-614 15-134 (477)
185 2hr2_A Hypothetical protein; a 98.0 8.6E-05 2.9E-09 62.1 12.2 74 592-665 59-147 (159)
186 1wao_1 Serine/threonine protei 98.0 1.8E-05 6.2E-10 81.6 9.8 120 526-649 12-134 (477)
187 3rkv_A Putative peptidylprolyl 98.0 9.5E-05 3.3E-09 63.5 12.8 68 555-625 63-130 (162)
188 1ihg_A Cyclophilin 40; ppiase 97.9 0.0001 3.5E-09 73.0 13.7 89 555-646 273-362 (370)
189 1ihg_A Cyclophilin 40; ppiase 97.9 0.00013 4.5E-09 72.3 14.1 124 486-611 224-362 (370)
190 3k9i_A BH0479 protein; putativ 97.9 2.9E-05 9.9E-10 62.5 7.8 84 499-583 4-89 (117)
191 2hr2_A Hypothetical protein; a 97.9 0.00054 1.8E-08 57.3 15.1 96 524-619 15-131 (159)
192 1klx_A Cysteine rich protein B 97.9 0.00047 1.6E-08 57.2 14.8 110 535-655 10-127 (138)
193 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.0002 6.8E-09 73.5 15.2 131 484-618 267-414 (457)
194 2if4_A ATFKBP42; FKBP-like, al 97.8 4.3E-05 1.5E-09 74.9 8.8 148 484-653 178-327 (338)
195 1klx_A Cysteine rich protein B 97.8 0.00064 2.2E-08 56.3 14.2 111 499-620 9-127 (138)
196 3n71_A Histone lysine methyltr 97.7 0.00019 6.4E-09 73.5 12.1 132 401-548 318-463 (490)
197 3n71_A Histone lysine methyltr 97.7 0.00024 8.2E-09 72.7 12.5 125 494-618 318-463 (490)
198 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00011 3.7E-09 72.0 9.3 146 452-619 181-328 (338)
199 2l6j_A TPR repeat-containing p 97.7 5.1E-05 1.7E-09 60.2 5.8 92 555-649 4-102 (111)
200 1zu2_A Mitochondrial import re 97.6 0.00014 4.8E-09 60.6 7.5 85 531-618 13-119 (158)
201 2l6j_A TPR repeat-containing p 97.6 0.0005 1.7E-08 54.2 10.7 86 589-677 3-95 (111)
202 2kat_A Uncharacterized protein 97.5 0.00031 1.1E-08 56.1 8.4 78 539-618 4-81 (115)
203 1zu2_A Mitochondrial import re 97.4 0.00038 1.3E-08 58.1 7.8 98 496-597 13-131 (158)
204 2kat_A Uncharacterized protein 97.4 0.00086 2.9E-08 53.4 9.6 79 503-583 3-81 (115)
205 1na3_A Designed protein CTPR2; 97.4 0.0017 5.9E-08 48.7 10.7 62 591-653 10-71 (91)
206 1na3_A Designed protein CTPR2; 97.4 0.002 6.7E-08 48.4 10.9 79 556-636 10-88 (91)
207 3ly7_A Transcriptional activat 97.3 0.0058 2E-07 58.7 14.7 143 517-665 191-348 (372)
208 3ma5_A Tetratricopeptide repea 97.2 0.0019 6.5E-08 49.8 8.8 63 555-618 7-69 (100)
209 3ma5_A Tetratricopeptide repea 97.2 0.0018 6.2E-08 49.9 8.6 65 518-583 5-69 (100)
210 3ly7_A Transcriptional activat 97.0 0.012 3.9E-07 56.7 14.2 144 482-630 191-348 (372)
211 3qww_A SET and MYND domain-con 96.8 0.0034 1.2E-07 63.0 9.1 63 591-653 341-410 (433)
212 3qwp_A SET and MYND domain-con 96.8 0.0076 2.6E-07 60.6 11.4 89 565-653 297-399 (429)
213 1pc2_A Mitochondria fission pr 96.7 0.02 6.8E-07 47.1 11.3 65 588-653 30-99 (152)
214 3qww_A SET and MYND domain-con 96.6 0.0053 1.8E-07 61.6 8.9 85 534-618 312-410 (433)
215 2kc7_A BFR218_protein; tetratr 96.4 0.008 2.7E-07 45.9 7.1 55 563-618 8-63 (99)
216 2kc7_A BFR218_protein; tetratr 96.4 0.011 3.6E-07 45.2 7.7 57 492-549 7-64 (99)
217 3qwp_A SET and MYND domain-con 96.4 0.016 5.4E-07 58.3 10.9 91 493-583 295-399 (429)
218 3mkq_A Coatomer beta'-subunit; 96.4 0.13 4.4E-06 57.0 19.4 161 159-377 609-770 (814)
219 3bee_A Putative YFRE protein; 96.3 0.03 1E-06 42.1 9.4 65 588-654 4-72 (93)
220 3mkq_A Coatomer beta'-subunit; 96.1 0.097 3.3E-06 58.0 16.6 97 336-453 610-707 (814)
221 1pc2_A Mitochondria fission pr 96.1 0.077 2.6E-06 43.6 11.3 85 536-624 14-103 (152)
222 3bee_A Putative YFRE protein; 96.1 0.066 2.3E-06 40.2 10.2 66 518-584 4-72 (93)
223 3u64_A Protein TP_0956; tetrat 95.8 0.12 4.2E-06 47.5 12.5 94 501-596 179-283 (301)
224 2v5f_A Prolyl 4-hydroxylase su 95.6 0.11 3.8E-06 40.0 10.2 69 554-624 4-78 (104)
225 2v5f_A Prolyl 4-hydroxylase su 95.6 0.12 4E-06 39.8 10.3 65 519-583 4-74 (104)
226 4ady_A RPN2, 26S proteasome re 95.6 3.4 0.00012 45.1 47.0 177 493-675 532-721 (963)
227 1wy6_A Hypothetical protein ST 95.6 0.65 2.2E-05 36.7 15.0 68 484-552 90-157 (172)
228 3mkq_B Coatomer subunit alpha; 95.3 0.5 1.7E-05 39.9 13.6 130 492-651 12-141 (177)
229 3lvg_A Clathrin heavy chain 1; 95.2 0.00055 1.9E-08 67.0 -5.4 224 185-441 54-277 (624)
230 1nzn_A CGI-135 protein, fissio 95.2 0.23 7.8E-06 39.2 10.3 65 588-653 33-102 (126)
231 3mkq_B Coatomer subunit alpha; 95.1 1.3 4.4E-05 37.4 16.1 27 484-510 33-59 (177)
232 3u64_A Protein TP_0956; tetrat 95.1 0.13 4.5E-06 47.3 10.0 80 536-619 179-269 (301)
233 3lvg_A Clathrin heavy chain 1; 95.0 0.00021 7.3E-09 69.8 -8.6 221 113-369 53-276 (624)
234 1nzn_A CGI-135 protein, fissio 94.7 0.2 6.9E-06 39.5 8.8 89 532-624 13-106 (126)
235 4h7y_A Dual specificity protei 94.7 0.54 1.9E-05 38.1 11.3 66 603-670 73-138 (161)
236 4h7y_A Dual specificity protei 94.6 0.66 2.2E-05 37.6 11.6 102 182-285 10-124 (161)
237 4ady_A RPN2, 26S proteasome re 94.4 7.2 0.00025 42.6 40.6 391 257-665 232-666 (963)
238 1wy6_A Hypothetical protein ST 93.3 2.5 8.5E-05 33.5 15.9 68 589-657 90-157 (172)
239 3o48_A Mitochondria fission 1 93.0 0.56 1.9E-05 37.2 8.4 77 586-666 36-117 (134)
240 4fhn_B Nucleoporin NUP120; pro 92.8 3.6 0.00012 47.2 18.5 88 256-345 900-991 (1139)
241 4b4t_P 26S proteasome regulato 92.8 7.2 0.00025 39.1 18.7 51 163-213 30-84 (445)
242 1y8m_A FIS1; mitochondria, unk 92.5 3.5 0.00012 33.1 12.7 72 587-661 36-111 (144)
243 4gns_B Protein CSD3, chitin bi 92.0 0.82 2.8E-05 48.8 11.1 52 598-651 345-397 (754)
244 4b4t_P 26S proteasome regulato 91.8 12 0.0004 37.6 19.7 171 482-653 53-246 (445)
245 4fhn_B Nucleoporin NUP120; pro 91.1 7.5 0.00026 44.5 18.7 140 221-385 900-1049(1139)
246 2ff4_A Probable regulatory pro 90.9 1.5 5.1E-05 43.2 11.1 69 557-626 173-246 (388)
247 4gns_B Protein CSD3, chitin bi 90.4 1.3 4.6E-05 47.2 10.8 128 487-616 250-397 (754)
248 1v54_E Cytochrome C oxidase po 90.3 1.6 5.4E-05 32.4 7.7 61 571-632 26-86 (109)
249 2ff4_A Probable regulatory pro 88.7 3 0.0001 41.0 11.3 57 525-582 176-232 (388)
250 1qsa_A Protein (soluble lytic 88.7 25 0.00087 36.7 27.8 45 332-377 79-123 (618)
251 3o48_A Mitochondria fission 1 88.4 5.1 0.00018 31.7 10.0 71 552-624 37-110 (134)
252 1v54_E Cytochrome C oxidase po 86.9 2.9 9.9E-05 31.1 7.1 49 501-549 26-74 (109)
253 2y69_E Cytochrome C oxidase su 86.5 3.4 0.00012 32.6 7.7 60 573-633 71-130 (152)
254 1y8m_A FIS1; mitochondria, unk 86.3 12 0.0004 30.1 12.1 71 552-624 36-109 (144)
255 2wpv_A GET4, UPF0363 protein Y 86.0 23 0.00077 33.2 21.4 109 331-450 39-157 (312)
256 3txn_A 26S proteasome regulato 83.4 35 0.0012 33.2 19.4 168 490-661 104-290 (394)
257 2qx5_A Nucleoporin NIC96; mRNA 83.4 21 0.00072 37.5 14.7 23 154-176 157-179 (661)
258 3esl_A Checkpoint serine/threo 82.2 11 0.00038 32.4 10.0 56 568-623 92-148 (202)
259 1zbp_A Hypothetical protein VP 81.7 30 0.001 31.3 13.2 115 494-619 6-129 (273)
260 3ffl_A Anaphase-promoting comp 81.1 18 0.0006 30.0 10.4 25 329-353 126-150 (167)
261 2y69_E Cytochrome C oxidase su 80.2 6.9 0.00024 30.9 7.1 44 540-583 73-116 (152)
262 2p58_C Putative type III secre 80.1 10 0.00036 28.0 7.6 79 128-215 21-99 (116)
263 4b4t_R RPN7, 26S proteasome re 80.0 12 0.00042 37.2 11.3 98 522-619 133-237 (429)
264 3ffl_A Anaphase-promoting comp 80.0 12 0.0004 31.1 9.0 59 293-351 23-89 (167)
265 4b4t_R RPN7, 26S proteasome re 79.4 14 0.00049 36.7 11.6 111 486-596 132-249 (429)
266 2uwj_G Type III export protein 78.1 9.8 0.00034 28.1 6.9 79 128-215 20-98 (115)
267 3lpz_A GET4 (YOR164C homolog); 76.2 53 0.0018 31.0 21.6 134 465-613 11-159 (336)
268 3ltm_A Alpha-REP4; protein eng 76.2 38 0.0013 29.3 20.1 154 112-283 31-184 (211)
269 3lpz_A GET4 (YOR164C homolog); 75.7 55 0.0019 30.9 22.5 25 554-578 135-159 (336)
270 1zbp_A Hypothetical protein VP 74.8 13 0.00044 33.7 8.5 60 563-625 5-64 (273)
271 4a1g_A Mitotic checkpoint seri 74.0 24 0.00081 28.8 9.1 52 609-660 84-136 (152)
272 3txn_A 26S proteasome regulato 72.4 74 0.0025 30.9 25.0 224 397-655 104-344 (394)
273 2wvi_A Mitotic checkpoint seri 69.9 35 0.0012 28.3 9.4 50 609-658 79-129 (164)
274 2wpv_A GET4, UPF0363 protein Y 67.8 80 0.0027 29.5 22.8 81 519-618 133-216 (312)
275 3ltj_A Alpharep-4; protein eng 64.1 68 0.0023 27.3 19.3 121 148-282 58-178 (201)
276 2uwj_G Type III export protein 59.5 51 0.0018 24.4 8.4 70 304-377 20-89 (115)
277 3esl_A Checkpoint serine/threo 59.2 84 0.0029 27.0 10.0 58 533-590 92-150 (202)
278 2p58_C Putative type III secre 58.7 53 0.0018 24.4 9.3 71 303-377 20-90 (116)
279 1wdy_A 2-5A-dependent ribonucl 54.5 99 0.0034 27.8 11.2 45 403-447 190-236 (285)
280 4aez_C MAD3, mitotic spindle c 52.2 40 0.0014 29.5 7.0 52 607-658 131-183 (223)
281 1bpo_A Protein (clathrin); cla 52.0 1.2E+02 0.0041 30.0 10.9 83 155-240 367-449 (494)
282 4ets_A Ferric uptake regulatio 50.5 42 0.0014 27.8 6.8 72 94-166 13-86 (162)
283 3eu9_A Huntingtin-interacting 50.0 71 0.0024 27.9 9.1 50 296-349 180-231 (240)
284 1wdy_A 2-5A-dependent ribonucl 49.1 1.3E+02 0.0046 26.9 11.2 83 331-415 151-239 (285)
285 1bpo_A Protein (clathrin); cla 48.9 1.9E+02 0.0066 28.6 11.8 116 84-206 335-450 (494)
286 1k1a_A B-cell lymphoma 3-encod 48.3 1.1E+02 0.0037 26.8 10.0 21 230-250 16-36 (241)
287 3eiq_C Programmed cell death p 46.4 2E+02 0.0069 27.4 14.5 28 328-355 57-84 (358)
288 2d2s_A Exocyst complex compone 45.4 1.3E+02 0.0043 26.8 9.5 90 526-618 24-119 (235)
289 3ltm_A Alpha-REP4; protein eng 45.2 1.4E+02 0.0049 25.4 19.7 154 147-318 31-184 (211)
290 4a1g_A Mitotic checkpoint seri 44.2 1.2E+02 0.004 24.7 8.2 72 108-183 62-134 (152)
291 1qsa_A Protein (soluble lytic 44.1 3E+02 0.01 28.7 42.6 49 562-613 388-436 (618)
292 3l6a_A Eukaryotic translation 43.8 2.2E+02 0.0077 27.2 14.2 26 292-317 14-39 (364)
293 2d2s_A Exocyst complex compone 43.1 1.5E+02 0.0051 26.3 9.6 91 490-583 23-119 (235)
294 2fe3_A Peroxide operon regulat 42.3 79 0.0027 25.5 7.2 59 106-165 14-72 (145)
295 3mv2_A Coatomer subunit alpha; 42.3 2.2E+02 0.0074 26.6 11.3 28 628-655 210-237 (325)
296 1k1a_A B-cell lymphoma 3-encod 42.2 1.2E+02 0.0042 26.4 9.4 17 229-245 85-101 (241)
297 3pvs_A Replication-associated 41.0 2.8E+02 0.0095 27.5 13.8 82 567-648 267-353 (447)
298 3jxi_A Vanilloid receptor-rela 38.5 61 0.0021 29.0 6.7 19 332-350 229-247 (260)
299 2zu6_B Programmed cell death p 38.4 1.1E+02 0.0037 28.6 8.2 23 189-211 7-29 (307)
300 2wvi_A Mitotic checkpoint seri 37.9 1.5E+02 0.0051 24.5 8.0 75 108-186 57-132 (164)
301 3eyy_A Putative iron uptake re 37.5 80 0.0027 25.4 6.4 60 105-166 10-69 (145)
302 2xig_A Ferric uptake regulatio 36.2 1E+02 0.0035 25.0 6.9 61 105-166 18-78 (150)
303 3hra_A Ankyrin repeat family p 35.5 1.5E+02 0.005 24.9 8.5 40 307-346 155-196 (201)
304 3eu9_A Huntingtin-interacting 35.2 1.7E+02 0.0059 25.2 9.2 50 399-452 181-232 (240)
305 1wgl_A TOLL-interacting protei 34.6 96 0.0033 20.4 5.1 43 69-112 13-56 (59)
306 4gq2_M Nucleoporin NUP120; bet 33.4 4.9E+02 0.017 28.8 14.0 133 153-304 814-950 (950)
307 2zu6_B Programmed cell death p 33.3 3E+02 0.01 25.6 13.8 63 489-552 170-234 (307)
308 3kea_A K1L; tropism, ANK repea 33.0 2.6E+02 0.0089 25.3 10.2 22 330-351 131-152 (285)
309 3ltj_A Alpharep-4; protein eng 32.8 2.2E+02 0.0075 23.9 20.7 153 148-318 27-179 (201)
310 2fu4_A Ferric uptake regulatio 31.7 1.3E+02 0.0043 21.1 6.1 57 108-165 11-68 (83)
311 3bu8_A Telomeric repeat-bindin 30.6 1.9E+02 0.0063 25.1 7.4 49 571-619 88-143 (235)
312 3jxi_A Vanilloid receptor-rela 30.5 65 0.0022 28.8 5.5 19 331-349 143-161 (260)
313 4ets_A Ferric uptake regulatio 29.7 2E+02 0.0069 23.6 7.8 70 166-236 14-85 (162)
314 3kae_A CDC27, possible protein 29.6 2.2E+02 0.0076 23.6 7.4 26 591-616 115-140 (242)
315 2ion_A PDCD4, programmed cell 29.2 2.3E+02 0.0078 23.0 7.9 23 489-511 13-35 (152)
316 2r9g_A AAA ATPase, central reg 29.0 2.7E+02 0.0093 23.8 10.5 17 569-585 28-44 (204)
317 1mzb_A Ferric uptake regulatio 29.0 1.5E+02 0.0051 23.4 6.7 59 107-166 11-70 (136)
318 1oyz_A Hypothetical protein YI 28.8 3.2E+02 0.011 24.5 25.3 47 148-199 36-82 (280)
319 2fu4_A Ferric uptake regulatio 27.4 1.6E+02 0.0054 20.5 7.3 61 615-676 7-68 (83)
320 3kae_A CDC27, possible protein 27.1 2.7E+02 0.0093 23.1 8.9 28 626-653 115-142 (242)
321 4aez_C MAD3, mitotic spindle c 26.9 2.1E+02 0.0072 25.0 7.5 73 108-184 111-184 (223)
322 2ion_A PDCD4, programmed cell 26.6 2.6E+02 0.0088 22.7 8.5 96 522-618 11-112 (152)
323 2o03_A Probable zinc uptake re 26.0 1.2E+02 0.0041 23.8 5.5 48 119-166 15-62 (131)
324 4g8k_A 2-5A-dependent ribonucl 25.3 4.1E+02 0.014 24.6 10.5 290 118-427 26-329 (337)
325 2rfa_A Transient receptor pote 24.9 3.2E+02 0.011 23.4 9.1 16 159-174 44-59 (232)
326 3mwm_A ZUR, putative metal upt 24.8 1.2E+02 0.0042 24.1 5.4 47 119-165 18-64 (139)
327 3ygs_P Procaspase 9; apoptosis 24.6 1.9E+02 0.0065 21.2 6.0 60 136-202 26-85 (97)
328 1wty_A Hypothetical protein TT 24.6 2.4E+02 0.0081 21.6 7.2 13 536-548 4-16 (119)
329 2w57_A Ferric uptake regulatio 24.5 1.7E+02 0.006 23.5 6.4 59 107-166 10-69 (150)
330 4gq2_M Nucleoporin NUP120; bet 24.5 7.5E+02 0.026 27.4 14.9 109 398-514 816-926 (950)
331 2keb_A DNA polymerase subunit 24.3 2.2E+02 0.0074 21.0 6.2 30 575-604 29-58 (101)
332 2p1h_A APAF-1, apoptotic prote 24.1 2.1E+02 0.007 20.7 6.4 59 133-200 24-82 (94)
333 3ygs_P Procaspase 9; apoptosis 23.8 1.1E+02 0.0036 22.6 4.5 37 234-274 51-87 (97)
334 2fe3_A Peroxide operon regulat 23.6 2.6E+02 0.009 22.2 7.3 61 615-676 12-72 (145)
335 3mkr_B Coatomer subunit alpha; 23.5 3.1E+02 0.011 25.5 8.4 134 530-680 112-253 (320)
336 2nsz_A Programmed cell death p 23.4 2.7E+02 0.0091 21.8 9.3 22 490-511 12-33 (129)
337 2xig_A Ferric uptake regulatio 23.2 2.9E+02 0.01 22.2 8.3 61 615-676 17-77 (150)
338 3kea_A K1L; tropism, ANK repea 23.2 2.9E+02 0.01 24.9 8.6 20 296-315 164-183 (285)
339 2ijq_A Hypothetical protein; s 23.1 3.1E+02 0.011 22.5 8.9 53 496-548 43-103 (161)
340 3ctd_A Putative ATPase, AAA fa 22.5 3.7E+02 0.013 23.1 10.1 37 532-568 47-83 (213)
341 2o03_A Probable zinc uptake re 22.2 1.6E+02 0.0056 22.9 5.7 47 630-676 15-61 (131)
342 4b4t_O 26S proteasome regulato 21.5 5.5E+02 0.019 24.7 11.0 58 526-583 82-155 (393)
343 2p1h_A APAF-1, apoptotic prote 21.4 2.4E+02 0.008 20.4 6.7 60 204-271 24-83 (94)
344 3eyy_A Putative iron uptake re 21.3 2.7E+02 0.0094 22.2 6.9 58 616-675 10-67 (145)
345 3hra_A Ankyrin repeat family p 21.2 2.5E+02 0.0086 23.3 7.3 15 412-426 158-172 (201)
346 2nsz_A Programmed cell death p 21.1 3E+02 0.01 21.5 9.8 95 523-618 10-110 (129)
347 3mwm_A ZUR, putative metal upt 20.8 1.5E+02 0.005 23.6 5.1 47 630-676 18-64 (139)
348 2w57_A Ferric uptake regulatio 20.4 3.4E+02 0.011 21.8 7.4 60 616-676 8-68 (150)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.7e-40 Score=354.70 Aligned_cols=498 Identities=12% Similarity=0.033 Sum_probs=391.6
Q ss_pred CCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHH
Q 040136 112 HTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVV 191 (681)
Q Consensus 112 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 191 (681)
++...|..++..+.+.|++++|..+|+++.... |+...+..++.+|.+.|++++|..+|+++.. .+++..+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l 156 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYARAKCLLTKEDL---YNRSSACRYLA 156 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHHHHHHHHHHHhc---cccchhHHHHH
Confidence 456667777777777777777777777777544 3556667777777777777777777777641 15667777777
Q ss_pred HHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 040136 192 LDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRV 271 (681)
Q Consensus 192 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 271 (681)
+.+|.+.|++++|+++|+++. |+.. ....+.+.++ ...+.+++..+|+.++.+|.+.|++
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETN-----PFRK----DEKNANKLLM-----------QDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSC-----TTC--------------C-----------CCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhhHHHHHHHHhccC-----Cccc----cccccccccc-----------cccccchhHHHHHHHHHHHHHcCCH
Confidence 777777777777777776422 1110 0011111111 1224456788999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH--HH-HHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 040136 272 SEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAA--KL-VDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALL 348 (681)
Q Consensus 272 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 348 (681)
++|.++|++|.+.+ +.+...+..+...+...+..+.+. .+ +..+...+..+...+|..++..|.+.|++++|.++|
T Consensus 217 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 217 DRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 99999999998764 335556665555443333222211 11 444444444445566777788899999999999999
Q ss_pred hhcCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcC
Q 040136 349 NKIPS--ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPN 426 (681)
Q Consensus 349 ~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~ 426 (681)
+++.. ++..+|+.++.+|.+.|++++|++ +++.+...+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+
T Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 296 SSINGLEKSSDLLLCKADTLFVRSRFIDVLA-ITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp HTSTTGGGCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred HHhhcCCchHHHHHHHHHHHHHhcCHHHHHH-HHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence 99988 889999999999999999999999 888887655 3377889999999999999999999999998663 557
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040136 427 IVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHK 506 (681)
Q Consensus 427 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 506 (681)
..++..++.+|.+.|++++|..+|+++.+.. +.+..+|+.++.+|.+.|++++|.+
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------------~~~~~~~~~l~~~~~~~g~~~~A~~ 428 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMD------------------------PQFGPAWIGFAHSFAIEGEHDQAIS 428 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------------------------CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8899999999999999999999999988753 2378899999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--
Q 040136 507 LVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHR-- 584 (681)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 584 (681)
+|+++.+.+ +.+..++..++.+|.+.|++++|..+|+++.+... .+..+|+.++..|.+.|++++|.++|+++.+.
T Consensus 429 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 506 (597)
T 2xpi_A 429 AYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506 (597)
T ss_dssp HHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 999999874 66889999999999999999999999999998743 37899999999999999999999999999875
Q ss_pred --CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 040136 585 --GLTPD--IVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPND 660 (681)
Q Consensus 585 --~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 660 (681)
+..|+ ..+|..++.+|.+.|++++|++.++++.+.+ +.+..+|..++.+|.+.|++++|.+.++++++ +.|+.
T Consensus 507 ~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~ 583 (597)
T 2xpi_A 507 KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNE 583 (597)
T ss_dssp HSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred ccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCC
Confidence 66787 7899999999999999999999999999864 44789999999999999999999999999998 45655
Q ss_pred H-HHHHHH
Q 040136 661 A-TWYILV 667 (681)
Q Consensus 661 ~-~~~~ll 667 (681)
. .+..+.
T Consensus 584 ~~~~~~l~ 591 (597)
T 2xpi_A 584 IMASDLLK 591 (597)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 4 444443
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.3e-39 Score=348.57 Aligned_cols=481 Identities=10% Similarity=0.002 Sum_probs=345.5
Q ss_pred HHHHhcCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 040136 84 LCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGG 163 (681)
Q Consensus 84 ~~~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 163 (681)
+...+...|+++.|+.+|+.+... .|+..++..++.++.+.|++++|..+|+++... +++..++..++.+|.+.|
T Consensus 90 ~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 164 (597)
T 2xpi_A 90 WRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLY 164 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHh
Confidence 334445689999999999998743 357788899999999999999999999998654 458889999999999999
Q ss_pred ChHHHHHHHHHcHhhc--------------CCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHH
Q 040136 164 VPGQATRLLLDMKSVY--------------GCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKA 229 (681)
Q Consensus 164 ~~~~A~~~~~~~~~~~--------------~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 229 (681)
++++|.++|+++.... +.+.+..+|+.++.+|.+.|++++|+++|++|.+.+.. +...+..+...
T Consensus 165 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~ 243 (597)
T 2xpi_A 165 DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSN 243 (597)
T ss_dssp CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHT
T ss_pred hHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHh
Confidence 9999999999654222 22334566666666666666666666666666665311 33344444433
Q ss_pred HHhcCChhHHH--HH-HHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 040136 230 LCMVNEVDSAC--SL-LRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRI 306 (681)
Q Consensus 230 ~~~~g~~~~A~--~~-~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 306 (681)
+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+++.++..+.+.|++
T Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 321 (597)
T 2xpi_A 244 HLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRF 321 (597)
T ss_dssp TCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCH
T ss_pred hcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCH
Confidence 33222211111 11 333333333333444555566666666666666666666543 35666666666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 040136 307 HEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSV 386 (681)
Q Consensus 307 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 386 (681)
++|.++|+++.+.+. .+..++..++.++.+.|++++|..++ +.+...
T Consensus 322 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~--------------------------------~~~~~~ 368 (597)
T 2xpi_A 322 IDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLIS--------------------------------NDLVDR 368 (597)
T ss_dssp HHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHH--------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHH--------------------------------HHHHhh
Confidence 666666666665432 24455555555555555555555544 444432
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccH
Q 040136 387 GCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRI 466 (681)
Q Consensus 387 ~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 466 (681)
.+.+..++..++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|..+|+++.+.+
T Consensus 369 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------- 437 (597)
T 2xpi_A 369 -HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF--------- 437 (597)
T ss_dssp -CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------
T ss_pred -CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------
Confidence 24467778888888888888888888888887653 3467788888888888898888888888887753
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040136 467 EEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEM 546 (681)
Q Consensus 467 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 546 (681)
+.+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|..+|+++
T Consensus 438 ---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 501 (597)
T 2xpi_A 438 ---------------QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNA 501 (597)
T ss_dssp ---------------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---------------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 2377888889999999999999999999988764 567888999999999999999999999998
Q ss_pred HHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040136 547 MRK----GIKPS--SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEG 620 (681)
Q Consensus 547 ~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 620 (681)
.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..++.+|.+.|++++|.+.|+++.+.
T Consensus 502 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~- 579 (597)
T 2xpi_A 502 LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI- 579 (597)
T ss_dssp HHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-
Confidence 876 56777 7889999999999999999999999998863 447889999999999999999999999999985
Q ss_pred CCC-CHHHHHHHHHHH
Q 040136 621 IYP-DAVTYNTLISWH 635 (681)
Q Consensus 621 ~~p-~~~~~~~l~~~~ 635 (681)
.| +...+..+..+|
T Consensus 580 -~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 580 -SPNEIMASDLLKRAL 594 (597)
T ss_dssp -CTTCHHHHHHHHHTT
T ss_pred -CCCChHHHHHHHHHH
Confidence 45 455666665554
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=3.6e-26 Score=233.21 Aligned_cols=249 Identities=15% Similarity=0.071 Sum_probs=127.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHH
Q 040136 395 FNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQ 474 (681)
Q Consensus 395 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 474 (681)
+..+...+...|++++|...++++.+.. +.+..+|..+...+.+.|++++|...|+++.+.++
T Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---------------- 200 (388)
T 1w3b_A 138 RSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP---------------- 200 (388)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT----------------
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----------------
Confidence 3334444444444444444444444431 22334444555555555555555555555544321
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 040136 475 DMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPS 554 (681)
Q Consensus 475 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 554 (681)
.+...+..+...+...|++++|...+++..... |.+..++..+..+|.+.|++++|...|+++++.+. .+
T Consensus 201 --------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~ 270 (388)
T 1w3b_A 201 --------NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HF 270 (388)
T ss_dssp --------TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SC
T ss_pred --------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CC
Confidence 134445555555555555555555555555442 33455555555555555555555555555555422 13
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISW 634 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 634 (681)
..++..++..+.+.|++++|.+.++++.+. .+.+..++..+..++.+.|++++|+..++++.+. .+.+..++..++.+
T Consensus 271 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~ 348 (388)
T 1w3b_A 271 PDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASV 348 (388)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHH
Confidence 445555555555566666666666655553 2334555555566666666666666666665553 12234555556666
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 040136 635 HFKEGLFDDAFLILHKGVANGFVPN-DATWYILVRNLVKEI 674 (681)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g 674 (681)
|.+.|++++|...++++++ +.|+ ...+..+...+...|
T Consensus 349 ~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 349 LQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence 6666666666666666654 2332 344445544444433
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=4.7e-26 Score=232.33 Aligned_cols=379 Identities=15% Similarity=0.076 Sum_probs=329.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040136 226 VMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNR 305 (681)
Q Consensus 226 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 305 (681)
+...+.+.|++++|.+.++.+.+.. |.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 4566788999999999999998875 5567778888889999999999999999988764 6688999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040136 306 IHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPS---ANVVLLNTVINGYVISGRFDEAKAIFYDS 382 (681)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 382 (681)
+++|+..|+++.... +.+..++..+..++...|++++|...|+++.. .+...+..+...+...|++++|.+ .++.
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKA-CYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHH-HHHH
Confidence 999999999998763 22455799999999999999999999998766 445678889999999999999999 7777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc
Q 040136 383 MLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNT 462 (681)
Q Consensus 383 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 462 (681)
+.... +.+..++..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|...+++.....
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----- 233 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS----- 233 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-----
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----
Confidence 77643 3367889999999999999999999999999874 4467789999999999999999999998887753
Q ss_pred cccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 040136 463 GDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGL 542 (681)
Q Consensus 463 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 542 (681)
+.+..++..+..+|.+.|++++|.+.++++.+.. |.+..++..+..++.+.|++++|...
T Consensus 234 -------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 293 (388)
T 1w3b_A 234 -------------------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDC 293 (388)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred -------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2367889999999999999999999999999874 66788999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040136 543 FEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIY 622 (681)
Q Consensus 543 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 622 (681)
|+++++.. +.+..++..++..+...|++++|.+.++++.+. .+.+..++..+..++.+.|++++|+..++++.+. .
T Consensus 294 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~ 369 (388)
T 1w3b_A 294 YNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--S 369 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--C
T ss_pred HHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--C
Confidence 99999874 457889999999999999999999999999985 3446788999999999999999999999999984 5
Q ss_pred CC-HHHHHHHHHHHHhcC
Q 040136 623 PD-AVTYNTLISWHFKEG 639 (681)
Q Consensus 623 p~-~~~~~~l~~~~~~~g 639 (681)
|+ ...|..+...+...|
T Consensus 370 p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 370 PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTCHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHhHHHHHHHcc
Confidence 54 667888887776655
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=4.2e-29 Score=258.40 Aligned_cols=204 Identities=15% Similarity=0.266 Sum_probs=183.3
Q ss_pred HHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---------HHHHH
Q 040136 471 GLYQDMLLEGVTANT-VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGA---------VDKGL 540 (681)
Q Consensus 471 ~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~A~ 540 (681)
.+.+++.+.+....+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+. +++|.
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~ 90 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGF 90 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHH
Confidence 334444445544443 46888999999999999999999999999999999999999999987664 68899
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040136 541 GLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEG 620 (681)
Q Consensus 541 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 620 (681)
++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus 91 ~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040136 621 IYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKEI 674 (681)
Q Consensus 621 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 674 (681)
+.||..+|+.|+++|++.|++++|.+++++|.+.|..|+..||+.++..++..+
T Consensus 171 ~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 171 VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999988653
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.6e-28 Score=254.04 Aligned_cols=206 Identities=14% Similarity=0.163 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCC---------c
Q 040136 132 VIDSVLLQMKEEGIICRE-SLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNC---------H 201 (681)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~ 201 (681)
.++.+..++.+.+....+ .++..++.+|++.|++++|+++|++|. ..|++||..+||++|.+|++.+. .
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~-~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEAR-RNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHH-HHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 455666777777765554 467889999999999999999999999 78999999999999999987765 4
Q ss_pred CcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 040136 202 KVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEM 281 (681)
Q Consensus 202 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 281 (681)
+.|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc
Q 040136 282 ILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRT 338 (681)
Q Consensus 282 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 338 (681)
.+.|+.||..||+.||.+|++.|+.++|.+++++|.+.|..|+..||+.++..++..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999988764
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1e-23 Score=223.88 Aligned_cols=443 Identities=12% Similarity=-0.017 Sum_probs=244.8
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHH
Q 040136 150 SLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKA 229 (681)
Q Consensus 150 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 229 (681)
..+..+...+.+.|++++|+..|+++... .|+...|..+..++.+.|++++|++.|+++++.+ +.+..++..+..+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 34445555555556666666665555522 2455555555555555555555555555555543 1133455555555
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 040136 230 LCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEA 309 (681)
Q Consensus 230 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 309 (681)
+.+.|++++|...|+.+.+.+ +++......++..+........+.+.+..+...+..|+...+..-........
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----- 156 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQE----- 156 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhcc-----
Confidence 555555555555555555543 23333333333333333333333333333322222222111111000000000
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCC----------CChHHHHHHHHHHHh---cCCHHHHH
Q 040136 310 AKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPS----------ANVVLLNTVINGYVI---SGRFDEAK 376 (681)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~l~~~~~~---~g~~~~a~ 376 (681)
..|+ ...+...+..... .+...+..+...+.. .|++++|+
T Consensus 157 -----------~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 209 (514)
T 2gw1_A 157 -----------NLPS----------------VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKAD 209 (514)
T ss_dssp -----------CCCC----------------HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHH
T ss_pred -----------CCch----------------hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHH
Confidence 0111 1111111111111 123344444444443 67777777
Q ss_pred HHHHHHHHh-----CCC--------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCH
Q 040136 377 AIFYDSMLS-----VGC--------IPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQL 443 (681)
Q Consensus 377 ~~~~~~~~~-----~~~--------~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 443 (681)
. +++.+.. ... +.+...+..+...+...|++++|...++.+.+.. |+...+..+...+...|++
T Consensus 210 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~ 286 (514)
T 2gw1_A 210 E-SFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDS 286 (514)
T ss_dssp H-HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCC
T ss_pred H-HHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCH
Confidence 7 5555544 211 1123456666677777777777777777777663 2366677777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 040136 444 EKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITY 523 (681)
Q Consensus 444 ~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 523 (681)
++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++
T Consensus 287 ~~A~~~~~~~~~~~------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 341 (514)
T 2gw1_A 287 TEYYNYFDKALKLD------------------------SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPY 341 (514)
T ss_dssp TTGGGHHHHHHTTC------------------------TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHH
T ss_pred HHHHHHHHHHhhcC------------------------cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHH
Confidence 77777777766642 2255667777777777777777777777777663 4466677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHH
Q 040136 524 NGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGL-TPD----IVTYNSLIN 598 (681)
Q Consensus 524 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~ 598 (681)
..+...|...|++++|...++++.+... .+...+..++..+...|++++|.+.++++.+... .++ ...+..+..
T Consensus 342 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 420 (514)
T 2gw1_A 342 IQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKAT 420 (514)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 7777777777777777777777776532 2456677777777777777777777777765311 111 236677777
Q ss_pred HHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 040136 599 GLCK---MGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDA 661 (681)
Q Consensus 599 ~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 661 (681)
++.. .|++++|...++++.+.. +.+..++..++.+|.+.|++++|...++++++ +.|+..
T Consensus 421 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~ 483 (514)
T 2gw1_A 421 LLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTME 483 (514)
T ss_dssp HHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHH
T ss_pred HHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccH
Confidence 7777 777778877777777742 33466677777777777888888877777776 345543
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=5.8e-23 Score=218.02 Aligned_cols=453 Identities=9% Similarity=-0.062 Sum_probs=317.9
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHH
Q 040136 114 FDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLD 193 (681)
Q Consensus 114 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~ 193 (681)
...+......+.+.|++++|...|+++.+.+ |+...+..+..+|.+.|++++|+..|+++. ... +.+...|..+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKAL-ELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHC-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHh-ccC-hHHHHHHHHHHH
Confidence 4567788899999999999999999999987 478999999999999999999999999998 333 566789999999
Q ss_pred HHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhH
Q 040136 194 VLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSE 273 (681)
Q Consensus 194 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 273 (681)
++...|++++|...|+++.+.+. ++......++..+........+.+.+..+...+..|+...+...............
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 99999999999999999999863 35555566666665555555555555555554433443333322221222222222
Q ss_pred HHHHHHHHHHCCCCC---------CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCCCCCcccHHHHHHHHH
Q 040136 274 ALMLLEEMILMGCTS---------DVQTFNDVIHGLCK---VNRIHEAAKLVDRMLV-----RGFTPDDITYGVLMHGLC 336 (681)
Q Consensus 274 A~~~~~~m~~~~~~~---------~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~ 336 (681)
...+...+......+ +...+......+.. .|++++|..+++++.+ ....|+....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------- 232 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL-------- 232 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH--------
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc--------
Confidence 222222222111111 13333333333333 5666666666666655 2112211100
Q ss_pred hcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 040136 337 RTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVN 416 (681)
Q Consensus 337 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~ 416 (681)
...+..++..++..+...|++++|.. +++...... |+...+..+...+...|++++|...++
T Consensus 233 ---------------~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~ 294 (514)
T 2gw1_A 233 ---------------KEKLAISLEHTGIFKFLKNDPLGAHE-DIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFD 294 (514)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHSSCHHHHHH-HHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHH
T ss_pred ---------------ChHHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 00123456666677777777777777 666655544 337778888889999999999999999
Q ss_pred HHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 040136 417 AMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFL 496 (681)
Q Consensus 417 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 496 (681)
.+.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 295 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------------------------~~~~~~~~~l~~~~~ 349 (514)
T 2gw1_A 295 KALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD------------------------PENIFPYIQLACLAY 349 (514)
T ss_dssp HHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC------------------------SSCSHHHHHHHHHTT
T ss_pred HHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------------------------hhhHHHHHHHHHHHH
Confidence 988763 4466788888999999999999999998888763 235678888899999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHh---c
Q 040136 497 RRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIK-PS----SISCNILINGLCR---T 568 (681)
Q Consensus 497 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~---~ 568 (681)
..|++++|...++++.+.. +.+..++..+...|...|++++|...++++.+.... ++ ...+..++..+.. .
T Consensus 350 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 428 (514)
T 2gw1_A 350 RENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV 428 (514)
T ss_dssp TTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT
T ss_pred HcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc
Confidence 9999999999999988763 557788899999999999999999999998875222 11 3488889999999 9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 040136 569 RKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAV 626 (681)
Q Consensus 569 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 626 (681)
|++++|.+.++++.+.. +.+..++..+..++.+.|++++|...|+++.+. .|+..
T Consensus 429 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~ 483 (514)
T 2gw1_A 429 ENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTME 483 (514)
T ss_dssp THHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHH
T ss_pred CCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccH
Confidence 99999999999998853 346778889999999999999999999999985 56644
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=6.7e-22 Score=211.07 Aligned_cols=430 Identities=11% Similarity=0.049 Sum_probs=265.4
Q ss_pred HhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 040136 186 RSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHAL 265 (681)
Q Consensus 186 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 265 (681)
..+..+...+.+.|++++|+..|+++++.. +.+..++..+..++.+.|++++|.+.++++.+.+ +.+..++..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 445556666677777777777777777654 2256667777777777777777777777777654 45566777777777
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCcccHHHHHHHHHhcCCHHH
Q 040136 266 SKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRG--FTPDDITYGVLMHGLCRTGRVDE 343 (681)
Q Consensus 266 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 343 (681)
...|++++|.+.|+.+ .. .|+. ....+..+...+....|...++.+.... ..+........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 7777777777777532 21 1221 1122334444555566777777765431 11111222334444555666666
Q ss_pred HHHHHhhcCCCChH---HHHHHHHHHHh--------cCCHHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhc
Q 040136 344 ARALLNKIPSANVV---LLNTVINGYVI--------SGRFDEAKAIFYDSMLSVGCIPDV-------FTFNILIHGLCKQ 405 (681)
Q Consensus 344 A~~~~~~~~~~~~~---~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~ll~~~~~~ 405 (681)
+...+......+.. ....+...+.. .|++++|+. +++.+...... +. .++..+...+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~-~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD-MYHSLLSANTV-DDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH-HHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-HHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhc
Confidence 66665555543222 23333322222 246677777 66666543311 22 2355555666777
Q ss_pred CChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCH
Q 040136 406 RRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANT 485 (681)
Q Consensus 406 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 485 (681)
|++++|...++...+. .|+...+..+...+...|++++|...++++.+.. +.+.
T Consensus 257 ~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------------------------~~~~ 310 (537)
T 3fp2_A 257 NNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN------------------------PEYP 310 (537)
T ss_dssp TCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC------------------------TTCH
T ss_pred ccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC------------------------CCCH
Confidence 7778888888777765 3446667777777777777777777777776643 2256
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 486 VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGL 565 (681)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 565 (681)
.++..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...++++.+... .+...+..+...+
T Consensus 311 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 388 (537)
T 3fp2_A 311 PTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEIL 388 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Confidence 677777777777888888888887777663 44566777777777778888888888877777632 2456777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 040136 566 CRTRKANTALEFLRDMIHRG-----LTPDIVTYNSLINGLCKM----------GCIQEALNLFDKLQAEGIYPDAVTYNT 630 (681)
Q Consensus 566 ~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~ 630 (681)
...|++++|.+.++++.+.. .......+..+..++... |++++|+..++++.+.. +.+..++..
T Consensus 389 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~ 467 (537)
T 3fp2_A 389 TDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIG 467 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 77888888888877776531 011112233444556666 77888888888777752 334667777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 040136 631 LISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
+..+|.+.|++++|.+.++++++
T Consensus 468 l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 468 LAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 77778888888888888887776
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=4.2e-21 Score=199.93 Aligned_cols=394 Identities=14% Similarity=0.089 Sum_probs=208.9
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 204 APNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMIL 283 (681)
Q Consensus 204 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 283 (681)
+...+.+..... +.+...+..+...+.+.|++++|..+|+.+.+.. +.+..++..+..++...|++++|...|+++.+
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344444444432 2245566666666666677777777776666543 44566666666666666777777776666665
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-c---ccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHH
Q 040136 284 MGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPD-D---ITYGVLMHGLCRTGRVDEARALLNKIPSANVVLL 359 (681)
Q Consensus 284 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 359 (681)
.+ +.+..++..+...+.+.|++++|.+.++++.... |+ . ..+..++..+... .+
T Consensus 89 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~-------------------~~ 146 (450)
T 2y4t_A 89 LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQ-------------------RL 146 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHH-------------------HH
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHH-------------------HH
Confidence 54 3445666666666666666666666666666542 22 1 2333333322111 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHh
Q 040136 360 NTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCK 439 (681)
Q Consensus 360 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 439 (681)
..+...+...|++++|+. +++.+.... +.+...+..+..++.+.|++++|...++.+.+.. +.+..++..+..+|..
T Consensus 147 ~~~a~~~~~~~~~~~A~~-~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 223 (450)
T 2y4t_A 147 RSQALNAFGSGDYTAAIA-FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQ 223 (450)
T ss_dssp HHHHHHHHHHTCHHHHHH-HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHH-HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 122333445555555555 444444322 2244444555555555555555555555544431 2234444444555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 040136 440 EGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLD 519 (681)
Q Consensus 440 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 519 (681)
.|++++|...|+++.... +.+...+..+... . .
T Consensus 224 ~g~~~~A~~~~~~~~~~~------------------------p~~~~~~~~~~~~--------------~---------~ 256 (450)
T 2y4t_A 224 LGDHELSLSEVRECLKLD------------------------QDHKRCFAHYKQV--------------K---------K 256 (450)
T ss_dssp TTCHHHHHHHHHHHHHHC------------------------TTCHHHHHHHHHH--------------H---------H
T ss_pred cCCHHHHHHHHHHHHHhC------------------------CChHHHHHHHHHH--------------H---------H
Confidence 555555544444444321 0112222111000 0 0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040136 520 EITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPS-----SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYN 594 (681)
Q Consensus 520 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 594 (681)
...+..++..|.+.|++++|...|+++++.. |+ ...+..++.++.+.|++++|++.++++.+.. +.+...|.
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~ 333 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 0011122666777777777777777777642 33 3456677777777777777777777776641 33567777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH------------HHhcC-----ChhHHHHHHHH-HHHCC
Q 040136 595 SLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISW------------HFKEG-----LFDDAFLILHK-GVANG 655 (681)
Q Consensus 595 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~-~~~~g 655 (681)
.+..+|...|++++|+..++++.+. .|+ ...+..+..+ |...| +.+++.+.+++ .++
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~-- 409 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ-- 409 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH--
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH--
Confidence 7777777777777777777777763 444 4455555422 33334 55677777776 444
Q ss_pred CCCC----H-------HHHHHHHHHHHhcCcccc
Q 040136 656 FVPN----D-------ATWYILVRNLVKEINMES 678 (681)
Q Consensus 656 ~~~~----~-------~~~~~ll~~~~~~g~~~~ 678 (681)
..|| . ..+..+..++-..|+.+.
T Consensus 410 ~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 410 WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 2232 1 356777777777776654
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=4.4e-21 Score=199.75 Aligned_cols=341 Identities=11% Similarity=0.041 Sum_probs=218.9
Q ss_pred HHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 040136 167 QATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDM 246 (681)
Q Consensus 167 ~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 246 (681)
.+...+..+.. ..+.+...+..+...+.+.|++++|+.+|+++++.. +.+..++..+..++...|++++|...|+++
T Consensus 10 ~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 10 GVDLGTENLYF--QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccc--ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444444441 225567789999999999999999999999999864 346889999999999999999999999999
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040136 247 TKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDV---QTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTP 323 (681)
Q Consensus 247 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 323 (681)
.+.+ +.+..++..+..+|.+.|++++|.+.|+++.+.. +.+. ..+..++..+...
T Consensus 87 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-------------------- 144 (450)
T 2y4t_A 87 IQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQ-------------------- 144 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHH--------------------
T ss_pred HhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHH--------------------
Confidence 9876 5678899999999999999999999999999864 3334 5666665441110
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHhhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 040136 324 DDITYGVLMHGLCRTGRVDEARALLNKIPS---ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIH 400 (681)
Q Consensus 324 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~ 400 (681)
.+..+...+...|++++|...|+++.. .+..++..++.+|.+.|++++|++ .++.+.... +.+..++..+..
T Consensus 145 ---~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~-~~~~~~~~~l~~ 219 (450)
T 2y4t_A 145 ---RLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS-DLKAASKLK-NDNTEAFYKIST 219 (450)
T ss_dssp ---HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHH-HHHHHHHHH-CSCHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhC-CCCHHHHHHHHH
Confidence 111122233344444444444444332 234445555555555555555555 444444322 235566677777
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHH
Q 040136 401 GLCKQRRFGSALELVNAMAVKGCEPNIVTYTIL------------VDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEE 468 (681)
Q Consensus 401 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l------------l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 468 (681)
.+...|++++|...++.+.... +.+...+..+ ...+.+.|++++|...|+++.+....
T Consensus 220 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--------- 289 (450)
T 2y4t_A 220 LYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS--------- 289 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS---------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---------
Confidence 7777777777777777776542 2223333332 56677777777777777776654210
Q ss_pred HHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040136 469 ALGLYQDMLLEGVTAN--TVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEM 546 (681)
Q Consensus 469 a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 546 (681)
.+. ...+..+..++.+.|++++|...++++.+.. |.+..++..++.+|...|++++|...|+++
T Consensus 290 -------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 355 (450)
T 2y4t_A 290 -------------IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETA 355 (450)
T ss_dssp -------------SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -------------chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 000 3456667777777777777777777776652 456677777777777777777777777777
Q ss_pred HHCCCCCCHHHHHHHH
Q 040136 547 MRKGIKPSSISCNILI 562 (681)
Q Consensus 547 ~~~~~~p~~~~~~~l~ 562 (681)
++.... +...+..+.
T Consensus 356 l~~~p~-~~~~~~~l~ 370 (450)
T 2y4t_A 356 QEHNEN-DQQIREGLE 370 (450)
T ss_dssp HTTSSS-CHHHHHHHH
T ss_pred HHhCcc-hHHHHHHHH
Confidence 764321 344444444
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=3.6e-21 Score=205.44 Aligned_cols=441 Identities=11% Similarity=0.014 Sum_probs=282.9
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHH
Q 040136 114 FDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLD 193 (681)
Q Consensus 114 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~ 193 (681)
...+..+...+.+.|++++|...|+++.+..+ .+...+..+..+|.+.|++++|++.|+++. ... +.+...+..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKAL-EIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcC-CchHHHHHHHHH
Confidence 45566667777777777777777777777664 366677777777777777777777777766 222 445666666667
Q ss_pred HHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCh
Q 040136 194 VLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHG--CVPNSVVYQTLIHALSKSNRV 271 (681)
Q Consensus 194 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~ 271 (681)
++...|++++|+..|+ ..... |+.. ...+..+...+...+|...++.+.... ..+........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~~--~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSLN--GDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHH-HHhcC--CCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 7777777777777774 23221 2211 112233334444556666666665431 001111122333344444444
Q ss_pred hHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHH
Q 040136 272 SEALMLLEEMILMGCTSDVQ-TFNDVIHGLCKV--------NRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVD 342 (681)
Q Consensus 272 ~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 342 (681)
+.+...+...... .+... ....+...+... |++++|..+++++.+.... +...+..+
T Consensus 177 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~----------- 242 (537)
T 3fp2_A 177 HLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENA----------- 242 (537)
T ss_dssp HHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHH-----------
T ss_pred HHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHH-----------
Confidence 4444333322211 11111 111111111111 2444444444444433111 11111111
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 040136 343 EARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKG 422 (681)
Q Consensus 343 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 422 (681)
..++..+...+...|++++|.. .++..... .|+...+..+...+...|++++|...++.+.+..
T Consensus 243 -------------~~~~~~~g~~~~~~~~~~~A~~-~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 306 (537)
T 3fp2_A 243 -------------ALALCYTGIFHFLKNNLLDAQV-LLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN 306 (537)
T ss_dssp -------------HHHHHHHHHHHHHTTCHHHHHH-HHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC
T ss_pred -------------HHHHHHHHHHHHhcccHHHHHH-HHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC
Confidence 1234455566777778888887 66666554 3557788888888899999999999999988764
Q ss_pred CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 040136 423 CEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLH 502 (681)
Q Consensus 423 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 502 (681)
+.+..++..+...+...|++++|...++++.+.. +.+...+..+..++...|+++
T Consensus 307 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------------------~~~~~~~~~la~~~~~~g~~~ 361 (537)
T 3fp2_A 307 -PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN------------------------PENVYPYIQLACLLYKQGKFT 361 (537)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------TTCSHHHHHHHHHHHHTTCHH
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------------------------CCCHHHHHHHHHHHHHcCCHH
Confidence 4467788899999999999999999998887753 225678888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc---------
Q 040136 503 EAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKG-----IKPSSISCNILINGLCRT--------- 568 (681)
Q Consensus 503 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~--------- 568 (681)
+|...++++.+.. +.+..++..+...+...|++++|...|+++.+.. .......+......+...
T Consensus 362 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 440 (537)
T 3fp2_A 362 ESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLD 440 (537)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CC
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhh
Confidence 9999999998874 6677889999999999999999999999987742 111223345556777777
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 569 -RKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 569 -g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
|++++|...++++.+.. +.+...+..+..++.+.|++++|.+.|+++.+.
T Consensus 441 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 441 EEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999998852 346788899999999999999999999999985
No 13
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=6.6e-17 Score=169.68 Aligned_cols=362 Identities=15% Similarity=0.064 Sum_probs=253.7
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChhHHHH
Q 040136 205 PNLFYDMLSKGISPTVYTFGVVMKALCM----VNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSK----SNRVSEALM 276 (681)
Q Consensus 205 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~ 276 (681)
+..+....+.| +...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .++.++|.+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44444444433 45555555555555 566677777776666654 45566666666666 666777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----cCCHHHHHHHH
Q 040136 277 LLEEMILMGCTSDVQTFNDVIHGLCK----VNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCR----TGRVDEARALL 348 (681)
Q Consensus 277 ~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 348 (681)
.|++..+.| +...+..|...|.. .+++++|++.+++..+.| +...+..+..+|.. .++.++|...|
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 777666644 44555556666655 566777777777666654 34455566666665 56677777777
Q ss_pred hhcCC-CChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHH
Q 040136 349 NKIPS-ANVVLLNTVINGYVI----SGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCK----QRRFGSALELVNAMA 419 (681)
Q Consensus 349 ~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~ 419 (681)
++..+ .++..+..|...|.. .++.++|++ +++...+.+ +...+..+...|.. .+++++|..++++..
T Consensus 175 ~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~-~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 250 (490)
T 2xm6_A 175 SKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQ-WYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSA 250 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH-HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHH-HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 66544 455666667777766 677777777 666665544 55666777777775 778888888888887
Q ss_pred hcCCCcCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 040136 420 VKGCEPNIVTYTILVDGFCK----EGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAF 495 (681)
Q Consensus 420 ~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 495 (681)
+.| +...+..+...|.. .+++++|...|++..+.+ +...+..+...|
T Consensus 251 ~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--------------------------~~~a~~~Lg~~y 301 (490)
T 2xm6_A 251 EQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG--------------------------NSDGQYYLAHLY 301 (490)
T ss_dssp TTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT--------------------------CHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC--------------------------CHHHHHHHHHHH
Confidence 764 45566666666766 677777777777766543 556667777777
Q ss_pred Hhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 496 LRR-----GSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAG---AVDKGLGLFEEMMRKGIKPSSISCNILINGLCR 567 (681)
Q Consensus 496 ~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 567 (681)
... +++++|...+++..+.+ +...+..+...|...| ++++|..+|++..+.| +...+..+...|..
T Consensus 302 ~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~ 375 (490)
T 2xm6_A 302 DKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQ 375 (490)
T ss_dssp HHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 776 88999999999888875 4566777777777756 7888999999988864 67788888888888
Q ss_pred ----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 040136 568 ----TRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCK----MGCIQEALNLFDKLQAEG 620 (681)
Q Consensus 568 ----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 620 (681)
.+++++|.+.+++..+.+ +...+..|...|.. .++.++|...|++..+.+
T Consensus 376 g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 376 GKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 789999999999988864 56677788888887 789999999999998864
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=6.8e-16 Score=168.81 Aligned_cols=547 Identities=10% Similarity=0.061 Sum_probs=339.2
Q ss_pred chhHHHHhcCCCCh-----hHH---hhhcCCCCHHHH---HHHhcCCCChHHHHHHHHHhhhCCC-CCCCHHHHHHHHHH
Q 040136 56 SENEWERLLKPFDL-----NEL---RKSLHKITPFQL---CKLLRLPLDVDTSMEIFTWAGSQEG-YCHTFDVYYVLIDK 123 (681)
Q Consensus 56 ~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~---~~~l~~~~~~~~al~~~~~~~~~~~-~~~~~~~~~~l~~~ 123 (681)
....|..++..-+. -.+ ........|.++ .+.+...+.+.+|+++++.+...+. |+.+...-..++..
T Consensus 952 d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~t 1031 (1630)
T 1xi4_A 952 DPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILT 1031 (1630)
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHH
Confidence 34678887754421 111 111244566654 3444568999999999999875433 44555666666666
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCc
Q 040136 124 LGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKV 203 (681)
Q Consensus 124 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 203 (681)
..+. +.....++.+...... ...+...+...|.+++|..+|++.. ......+.++. ..+++++
T Consensus 1032 AIka-D~~Rv~eyI~kLd~~d-------~~eIA~Iai~lglyEEAf~IYkKa~------~~~~A~~VLie---~i~nldr 1094 (1630)
T 1xi4_A 1032 AIKA-DRTRVMEYINRLDNYD-------APDIANIAISNELFEEAFAIFRKFD------VNTSAVQVLIE---HIGNLDR 1094 (1630)
T ss_pred HHHh-ChhhHHHHHHHhhhcc-------HHHHHHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHHH---HHhhHHH
Confidence 6665 5566666666665322 3346777788899999999998764 11222233322 6678888
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 204 APNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMIL 283 (681)
Q Consensus 204 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 283 (681)
|.++.++. -+..+|..+.+++...|++++|...|.+. .|...|..++.++.+.|++++|.+.|....+
T Consensus 1095 AiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk 1162 (1630)
T 1xi4_A 1095 AYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARK 1162 (1630)
T ss_pred HHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888754 14677888889999999999999888653 3577788888999999999999998887776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHH
Q 040136 284 MGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVI 363 (681)
Q Consensus 284 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 363 (681)
.. ++....+.++.+|++.+++++..... . .++...+..+...|...|++++|...|... ..|..++
T Consensus 1163 ~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA 1228 (1630)
T 1xi4_A 1163 KA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLA 1228 (1630)
T ss_pred hc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHH
Confidence 54 33333345888888888887544432 1 335556667888888899999999998885 4788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCH
Q 040136 364 NGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQL 443 (681)
Q Consensus 364 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 443 (681)
..|.+.|++++|++ .++.. .+..+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+
T Consensus 1229 ~tLvkLge~q~AIE-aarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~f 1296 (1630)
T 1xi4_A 1229 STLVHLGEYQAAVD-GARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYF 1296 (1630)
T ss_pred HHHHHhCCHHHHHH-HHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCH
Confidence 89999999999888 55433 35678888888888888888887765432 33556677888888888999
Q ss_pred HHHHHHHHHHHHCCCCCCc-------------cccHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCCHHHHHH
Q 040136 444 EKANIIINEMLAKGLSLNT-------------GDRIEEALGLYQDMLLEGV----TANTVTYNTLIHAFLRRGSLHEAHK 506 (681)
Q Consensus 444 ~~A~~~~~~~~~~~~~~~~-------------~~~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~ 506 (681)
++|+.+++..+........ .+++.++++.|..-..-.. --+...|..++..|.+.|+++.|..
T Consensus 1297 eEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1297 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 9998888777654311110 4455555555554332100 0256778889999999999998873
Q ss_pred HH-------------HHHHhCCCCCCHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHC---------
Q 040136 507 LV-------------NDMLFRGCPLDEITYNGLIKALCNAG---------------AVDKGLGLFEEMMRK--------- 549 (681)
Q Consensus 507 ~~-------------~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~--------- 549 (681)
.+ ++.+.. ..|+..|...+.-|...+ +++++.++|...-..
T Consensus 1377 tm~~h~~~a~~~~~Fk~~i~k--v~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~ 1454 (1630)
T 1xi4_A 1377 TMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRS 1454 (1630)
T ss_pred HHHhccHhhhhhHHHHHHhcc--cccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcCChHHhHHHHHH
Confidence 32 222222 446667776666666555 556665555421000
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHH------------HHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHH
Q 040136 550 -GIKPSSISCNILINGLCRTRKANTALEF------------LRDMIHRGLTPDIVTYNSLING-LCKMGCIQEALNLFDK 615 (681)
Q Consensus 550 -~~~p~~~~~~~l~~~~~~~g~~~~A~~~------------~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~ 615 (681)
....+...-..+.+.|....+++.-.+- ..++.+ -+..-+..+... |.+.|+|+.|.+++++
T Consensus 1455 vq~~n~~~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~La~~lek----heLl~frrIAa~ly~~n~~~~~ai~l~k~ 1530 (1630)
T 1xi4_A 1455 VQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEK----HELIEFRRIAAYLFKGNNRWKQSVELCKK 1530 (1630)
T ss_pred HHHhcchhhhHHHHHHhcCccchHHHHHHHhhccCcCHHHHHHHhhh----hhHHHHHHHHHHHHHhcCcHHHHHHHHHh
Confidence 0001111112233333333332211111 111111 011112333332 3344777777777655
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc
Q 040136 616 LQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKEIN 675 (681)
Q Consensus 616 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 675 (681)
..- |.-.+++..+.|+.+.+.+++.-..+. -+...|-.++-.|+..-+
T Consensus 1531 d~l---------~~dAm~~a~~S~d~e~~e~ll~~F~~~---~~~E~f~a~Ly~cy~l~~ 1578 (1630)
T 1xi4_A 1531 DSL---------YKDAMQYASESKDTELAEELLQWFLQE---EKRECFGACLFTCYDLLR 1578 (1630)
T ss_pred ccC---------HHHHHHHHHHcCCHHHHHHHHHHHHhc---CChhHHHHHHHHHhccCC
Confidence 432 344566667777777777777666654 344555566666655433
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=1.4e-16 Score=167.10 Aligned_cols=365 Identities=12% Similarity=0.080 Sum_probs=307.8
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 040136 238 SACSLLRDMTKHGCVPNSVVYQTLIHALSK----SNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCK----VNRIHEA 309 (681)
Q Consensus 238 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a 309 (681)
.+...+....+.| +...+..+...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 3455566665554 67888888888888 899999999999999865 67788888888888 8999999
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChHHHHHHHHHHHh----cCCHHHHHHHHH
Q 040136 310 AKLVDRMLVRGFTPDDITYGVLMHGLCR----TGRVDEARALLNKIPS-ANVVLLNTVINGYVI----SGRFDEAKAIFY 380 (681)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~ 380 (681)
.++|++..+.| +...+..|...|.. .+++++|...|++... .++..+..|...|.. .++.++|++ ++
T Consensus 99 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~-~~ 174 (490)
T 2xm6_A 99 VIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMARE-WY 174 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH-HH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHH-HH
Confidence 99999998875 56677788888888 8899999999998766 567788899999987 789999999 77
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHh----cCCHHHHHHHHHH
Q 040136 381 DSMLSVGCIPDVFTFNILIHGLCK----QRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCK----EGQLEKANIIINE 452 (681)
Q Consensus 381 ~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~ 452 (681)
+...+.+ +...+..+...|.. .++.++|..++++..+.| +...+..+...|.. .+++++|...|++
T Consensus 175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 7777754 67788888888887 899999999999998875 56677788888876 7788888888887
Q ss_pred HHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 040136 453 MLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLR----RGSLHEAHKLVNDMLFRGCPLDEITYNGLIK 528 (681)
Q Consensus 453 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 528 (681)
..+.+ +...+..+...|.. .++.++|.+.|++..+.| +...+..+..
T Consensus 249 a~~~~--------------------------~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~ 299 (490)
T 2xm6_A 249 SAEQG--------------------------NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAH 299 (490)
T ss_dssp HHTTT--------------------------CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHH
T ss_pred HHHCC--------------------------CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Confidence 77653 56677777777877 899999999999998875 5667778888
Q ss_pred HHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 529 ALCNA-----GAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTR---KANTALEFLRDMIHRGLTPDIVTYNSLINGL 600 (681)
Q Consensus 529 ~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 600 (681)
.|... +++++|..+|+++.+.| +...+..+...|...| +.++|++.+++..+.| +...+..|...|
T Consensus 300 ~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y 373 (490)
T 2xm6_A 300 LYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNAL 373 (490)
T ss_dssp HHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 88887 89999999999999975 5677888888888766 7899999999999863 677888899999
Q ss_pred Hh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCC
Q 040136 601 CK----MGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFK----EGLFDDAFLILHKGVANGF 656 (681)
Q Consensus 601 ~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~ 656 (681)
.. .+++++|+..|++..+.| +...+..|...|.+ .+++++|...|+++.+.|.
T Consensus 374 ~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 374 LQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 88 899999999999999965 67788889999988 8999999999999998663
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=9.4e-18 Score=168.62 Aligned_cols=326 Identities=11% Similarity=0.057 Sum_probs=230.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCC---CChHHHHHHHHH
Q 040136 289 DVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPS---ANVVLLNTVING 365 (681)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 365 (681)
+...+..+...+...|++++|+..++++.+.. +.+..++..+..++...|++++|...++++.. .+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 34556667777777888888888887777653 22455666666666667777776666665433 233444555555
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcC
Q 040136 366 YVISGRFDEAKAIFYDSMLSVGCIP----DVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEG 441 (681)
Q Consensus 366 ~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 441 (681)
|...|++++|.. .++..... .| +...+..+.... . ...+..+...+...|
T Consensus 81 ~~~~~~~~~A~~-~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 81 LLKQGKLDEAED-DFKKVLKS--NPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHTCHHHHHH-HHHHHHTS--CCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTT
T ss_pred HHHcCChHHHHH-HHHHHHhc--CCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHcc
Confidence 555555555555 44444332 12 111111111000 0 011223356788899
Q ss_pred CHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 040136 442 QLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEI 521 (681)
Q Consensus 442 ~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 521 (681)
++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..
T Consensus 135 ~~~~A~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 189 (359)
T 3ieg_A 135 DYTAAITFLDKILEVC------------------------VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTE 189 (359)
T ss_dssp CHHHHHHHHHHHHHHC------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHH
T ss_pred CHHHHHHHHHHHHHhC------------------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 9999999998887753 2377889999999999999999999999999874 67889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCN------------ILINGLCRTRKANTALEFLRDMIHRGLTPD 589 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 589 (681)
++..+...+...|++++|...|+++.+.... +...+. .++..+...|++++|.+.++++.+.. |+
T Consensus 190 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~ 266 (359)
T 3ieg_A 190 AFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PS 266 (359)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC
Confidence 9999999999999999999999999986432 333333 33677899999999999999999853 33
Q ss_pred -H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHH
Q 040136 590 -I----VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPN-DATW 663 (681)
Q Consensus 590 -~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~ 663 (681)
. ..+..+..++...|++++|+..++++.+.. +.+..++..++.++...|++++|...++++++ +.|+ ...+
T Consensus 267 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~ 343 (359)
T 3ieg_A 267 VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIR 343 (359)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHH
T ss_pred chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHH
Confidence 3 235567889999999999999999999862 44688999999999999999999999999998 4565 4555
Q ss_pred HHHHHHHHh
Q 040136 664 YILVRNLVK 672 (681)
Q Consensus 664 ~~ll~~~~~ 672 (681)
..+..+...
T Consensus 344 ~~l~~~~~~ 352 (359)
T 3ieg_A 344 EGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
No 17
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=1.9e-17 Score=166.45 Aligned_cols=327 Identities=11% Similarity=0.079 Sum_probs=249.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 040136 254 NSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMH 333 (681)
Q Consensus 254 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 333 (681)
++..+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45678889999999999999999999999865 5578899999999999999999999999999763 235678899999
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCh------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 040136 334 GLCRTGRVDEARALLNKIPSANV------VLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRR 407 (681)
Q Consensus 334 ~~~~~g~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 407 (681)
++...|++++|...|+++...++ ..+..+...+. ...+..+...+...|+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE------------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH------------------------HHHHHHHHHHHHHccC
Confidence 99999999999999998876332 22332221110 1123345566777888
Q ss_pred hhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHH
Q 040136 408 FGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVT 487 (681)
Q Consensus 408 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 487 (681)
+++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...
T Consensus 136 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------------~~~~~~ 190 (359)
T 3ieg_A 136 YTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK------------------------SDNTEA 190 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------------------------SCCHHH
T ss_pred HHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------CCCHHH
Confidence 888888888877653 3456777778888888888888888887777653 236677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 040136 488 YNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYN------------GLIKALCNAGAVDKGLGLFEEMMRKGIKPSS 555 (681)
Q Consensus 488 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 555 (681)
+..+...+...|++++|...+++..+.. +.+...+. .+...+.+.|++++|...++++.+.... +.
T Consensus 191 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 268 (359)
T 3ieg_A 191 FYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VA 268 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ch
Confidence 7788888888888888888888877763 33444333 2366688899999999999999886432 22
Q ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 040136 556 ----ISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNT 630 (681)
Q Consensus 556 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ 630 (681)
..+..+...+...|++++|.+.+++..+. .+.+..++..+..++...|++++|...|+++.+. .|+ ...+..
T Consensus 269 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~ 345 (359)
T 3ieg_A 269 EYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREG 345 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHH
Confidence 23556788899999999999999999885 2336788899999999999999999999999985 555 555555
Q ss_pred HHHHHH
Q 040136 631 LISWHF 636 (681)
Q Consensus 631 l~~~~~ 636 (681)
+..+..
T Consensus 346 l~~~~~ 351 (359)
T 3ieg_A 346 LEKAQR 351 (359)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 18
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=1.2e-14 Score=159.17 Aligned_cols=409 Identities=13% Similarity=0.129 Sum_probs=283.8
Q ss_pred CCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhH
Q 040136 111 CHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGI--ICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSY 188 (681)
Q Consensus 111 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 188 (681)
..+++--...++.+...|.+.+|.++++++.-.+- ..+...-+.|+.+..+. +..+..+..++.. .-+ .
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-----~~d---~ 1052 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-----NYD---A 1052 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-----hcc---H
Confidence 45666667778888888888888888888874321 13445666677777666 4455655555544 112 3
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 040136 189 NVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKS 268 (681)
Q Consensus 189 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 268 (681)
..+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++. -+..+|..+..++...
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhC
Confidence 4466777888889999888887421 2222233322 677888888888865 2367888888899999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 040136 269 NRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALL 348 (681)
Q Consensus 269 ~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 348 (681)
|++++|.+.|.+. .|...|..++..+.+.|++++|.+++....+.. ++....+.++.+|++.+++++.....
T Consensus 1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 9999998888653 467778888888999999999999888877654 34444455888888888888644443
Q ss_pred hhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHh
Q 040136 349 NKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIV 428 (681)
Q Consensus 349 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 428 (681)
..++...|..+...|...|++++|.. +|... ..|..+...+++.|+++.|.+.+++.. +..
T Consensus 1191 ---~~~n~ad~~~iGd~le~eg~YeeA~~-~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~ 1251 (1630)
T 1xi4_A 1191 ---NGPNNAHIQQVGDRCYDEKMYDAAKL-LYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STR 1251 (1630)
T ss_pred ---hCCCHHHHHHHHHHHHhcCCHHHHHH-HHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHH
Confidence 34566677778888888899999988 76653 378888888888899988888887662 567
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040136 429 TYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLV 508 (681)
Q Consensus 429 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 508 (681)
+|..+..+|...|++..|....-.+ ..++..+..++..|.+.|.+++|+.++
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~I----------------------------iv~~deLeeli~yYe~~G~feEAI~Ll 1303 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLHI----------------------------VVHADELEELINYYQDRGYFEELITML 1303 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhh----------------------------hcCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888888888887665432 226667778888888889999999998
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHHH---
Q 040136 509 NDMLFRGCPLDEITYNGLIKALCNA--GAVDKGLGLFEEMMRKGIKP------SSISCNILINGLCRTRKANTALEF--- 577 (681)
Q Consensus 509 ~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~--- 577 (681)
+..+... +.....|.-+...|++. ++..++.++|..-.. +++ +...|.-++..|.+.|+++.|...
T Consensus 1304 E~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1304 EAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred HHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 8877654 44555666666666653 345555555553332 222 456688888888888888888732
Q ss_pred ----------HHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 578 ----------LRDMIHRGLTPDIVTYNSLINGLCK 602 (681)
Q Consensus 578 ----------~~~~~~~~~~p~~~~~~~l~~~~~~ 602 (681)
|++.+. -..|...|...+..|..
T Consensus 1381 h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~ 1413 (1630)
T 1xi4_A 1381 HPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLE 1413 (1630)
T ss_pred ccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHHh
Confidence 222221 23456666666666663
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=2.6e-17 Score=163.33 Aligned_cols=289 Identities=11% Similarity=0.006 Sum_probs=204.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHH
Q 040136 358 LLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGF 437 (681)
Q Consensus 358 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 437 (681)
.+..++..+...|++++|++ +++.+.... +.+...+..++..+...|++++|..+++++.+.. +.+...+..+...+
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~-~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYK-LTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYY 100 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHH-HHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHH-HHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH
Confidence 34444444555555555555 444444332 2234455566677777888888888888877653 33566777777788
Q ss_pred HhcC-CHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 040136 438 CKEG-QLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGC 516 (681)
Q Consensus 438 ~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 516 (681)
...| ++++|...|+++.+.. +.+...|..+...+...|++++|...++++.+..
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 155 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLE------------------------KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM- 155 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTC------------------------TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-
T ss_pred HHhhhhHHHHHHHHHHHHHhC------------------------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-
Confidence 8888 7888888887777653 2256677788888888888888888888887763
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCC
Q 040136 517 PLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRG--------LTP 588 (681)
Q Consensus 517 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~p 588 (681)
+.+...+..+...|...|++++|...++++.+... .+...+..++..+...|++++|...++++.+.. .+.
T Consensus 156 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 234 (330)
T 3hym_B 156 KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK 234 (330)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTT
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccH
Confidence 44566677788888888888888888888887643 356778888888888888888888888877631 123
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 040136 589 DIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVP-NDATWYILV 667 (681)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~ll 667 (681)
+..++..+..++...|++++|+..++++.+.. +.+...+..+..++.+.|++++|.+.++++++ +.| +...+..+.
T Consensus 235 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~ 311 (330)
T 3hym_B 235 WEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLG 311 (330)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHH
Confidence 35678888888888889999998888888753 33567788888888888999999998888887 445 456666666
Q ss_pred HHH-HhcCcccc
Q 040136 668 RNL-VKEINMES 678 (681)
Q Consensus 668 ~~~-~~~g~~~~ 678 (681)
.++ ...|+.+.
T Consensus 312 ~~~~~~~g~~~a 323 (330)
T 3hym_B 312 HCIEMYIGDSEA 323 (330)
T ss_dssp HHHHTTTTC---
T ss_pred HHHHHHhCchhc
Confidence 666 45566554
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=4.7e-16 Score=164.93 Aligned_cols=419 Identities=11% Similarity=0.081 Sum_probs=290.7
Q ss_pred CCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 040136 182 QPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTL 261 (681)
Q Consensus 182 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 261 (681)
+-+...|..++. +.+.|++++|..+|+++++.. +.+...|..++..+.+.|++++|..+|+++.... |+...|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 457788888888 478899999999999999863 3366788899999999999999999999998874 677777777
Q ss_pred HHHH-HhcCChhHHHH----HHHHHHH-CCCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCc
Q 040136 262 IHAL-SKSNRVSEALM----LLEEMIL-MGCTS-DVQTFNDVIHGLCK---------VNRIHEAAKLVDRMLVRGFTPDD 325 (681)
Q Consensus 262 i~~~-~~~~~~~~A~~----~~~~m~~-~~~~~-~~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~ 325 (681)
+... ...|+.+.|.+ +|++... .|..| +...|...+..... .|+++.|..+|++.+.. |..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~ 162 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMI 162 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCT
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhh
Confidence 7533 45677777665 6666654 24333 45677777766554 67888999999988873 322
Q ss_pred ---ccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH------HHhCC---CCCC--
Q 040136 326 ---ITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDS------MLSVG---CIPD-- 391 (681)
Q Consensus 326 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~------~~~~~---~~p~-- 391 (681)
..|..........|. ..+..++.. ..+++.+|.. +++. ..+.. ++|+
T Consensus 163 ~~~~~~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~-~~~~~~~~~~~l~~~~~~~~p~~~ 223 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARR-VAKEYETVMKGLDRNAPSVPPQNT 223 (530)
T ss_dssp THHHHHHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHH-HHHHHHHHHHHCCSSSCCCCCC--
T ss_pred hHHHHHHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHH-HHHHHHHHHHHhccccccCCCCCC
Confidence 222222211111111 111111111 2234455554 3332 11111 2343
Q ss_pred ------HHHHHHHHHHHHhc----CCh----hHHHHHHHHHHhcCCCcCHhhHHHHHHHHHh-------cCCHH------
Q 040136 392 ------VFTFNILIHGLCKQ----RRF----GSALELVNAMAVKGCEPNIVTYTILVDGFCK-------EGQLE------ 444 (681)
Q Consensus 392 ------~~~~~~ll~~~~~~----~~~----~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~g~~~------ 444 (681)
...|...+...... ++. ..+..+|++..... +.+...|..++..+.+ .|+++
T Consensus 224 ~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~ 302 (530)
T 2ooe_A 224 PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFS 302 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhh
Confidence 23455444333221 232 36778888888762 4467788888887775 68876
Q ss_pred -HHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HH
Q 040136 445 -KANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDE-IT 522 (681)
Q Consensus 445 -~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~ 522 (681)
+|..+|++..+. -.+.+...|..++..+.+.|++++|..+|+++++.. +.+. .+
T Consensus 303 ~~A~~~~~~Al~~-----------------------~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 358 (530)
T 2ooe_A 303 DEAANIYERAIST-----------------------LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLV 358 (530)
T ss_dssp HHHHHHHHHHTTT-----------------------TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHH
T ss_pred HHHHHHHHHHHHH-----------------------hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHH
Confidence 566666655431 123368889999999999999999999999999862 3343 58
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 523 YNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILING-LCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLC 601 (681)
Q Consensus 523 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 601 (681)
|..++..+.+.|++++|..+|+++.+... .+...|...+.. +...|+.++|..+|++.++.. +.+...|..++..+.
T Consensus 359 ~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~ 436 (530)
T 2ooe_A 359 YIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLS 436 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 99999999999999999999999998632 233333332222 346899999999999998852 336788999999999
Q ss_pred hcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 602 KMGCIQEALNLFDKLQAEG-IYPD--AVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 602 ~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
+.|+.++|..+|++++..+ ..|+ ...|...+......|+.+.+..+.+++.+
T Consensus 437 ~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 437 HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp TTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred hCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999863 2332 45888889989999999999999999987
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=4.1e-17 Score=161.87 Aligned_cols=292 Identities=11% Similarity=0.022 Sum_probs=200.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 040136 288 SDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYV 367 (681)
Q Consensus 288 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 367 (681)
.+...+..++..+...|++++|.++++++.+.. +.+...+..++.++..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~------------------------------ 68 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVE------------------------------ 68 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHH------------------------------
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHH------------------------------
Confidence 344445555555555566666666555555442 1123334444444444
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHH
Q 040136 368 ISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQR-RFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKA 446 (681)
Q Consensus 368 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 446 (681)
.|++++|.. +++.+.... +.+...+..+...+...| ++++|...++...+.. +.+...+..+...+...|++++|
T Consensus 69 -~~~~~~A~~-~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 144 (330)
T 3hym_B 69 -LNKANELFY-LSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQA 144 (330)
T ss_dssp -HTCHHHHHH-HHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHH
T ss_pred -hhhHHHHHH-HHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHH
Confidence 445555554 344443322 234566777777777777 7888888888777653 33566777788888888888888
Q ss_pred HHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 040136 447 NIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGL 526 (681)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 526 (681)
...++++.+.. +.+...+..+...|...|++++|.+.++++.+.. +.+..++..+
T Consensus 145 ~~~~~~a~~~~------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l 199 (330)
T 3hym_B 145 MAAYFTAAQLM------------------------KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEV 199 (330)
T ss_dssp HHHHHHHHHHT------------------------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHH
T ss_pred HHHHHHHHHhc------------------------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 88887777653 2245666678888888888888888888888773 6677888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 527 IKALCNAGAVDKGLGLFEEMMRKG--------IKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLIN 598 (681)
Q Consensus 527 ~~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 598 (681)
...+...|++++|...++++.+.. ......++..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 200 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 278 (330)
T 3hym_B 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGY 278 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHH
Confidence 888888889999988888887641 13345788888888999999999999999888753 335677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH-HhcCChh
Q 040136 599 GLCKMGCIQEALNLFDKLQAEGIYP-DAVTYNTLISWH-FKEGLFD 642 (681)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~~~ 642 (681)
++...|++++|...++++.+. .| +...+..+..++ ...|+.+
T Consensus 279 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 279 IHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhCchh
Confidence 899999999999999988874 44 566777777777 4455543
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=1.3e-15 Score=161.54 Aligned_cols=427 Identities=11% Similarity=0.052 Sum_probs=266.8
Q ss_pred CCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHH
Q 040136 112 HTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVV 191 (681)
Q Consensus 112 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 191 (681)
.+...+..++.. .+.|+++.|..+|+++.+..+ .+...|..++..+.+.|++++|..+|+++... .|+...|...
T Consensus 11 ~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P-~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p~~~lw~~~ 85 (530)
T 2ooe_A 11 YDLDAWSILIRE-AQNQPIDKARKTYERLVAQFP-SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VLHIDLWKCY 85 (530)
T ss_dssp TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CCCHHHHHHH
T ss_pred CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHHHHHH
Confidence 466677777763 667788888888888877654 46777778888888888888888888887722 3566666666
Q ss_pred HHHH-HhcCCcCcHHH----HHHHHHHC-CCCC-ChhhHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCCC-
Q 040136 192 LDVL-VAGNCHKVAPN----LFYDMLSK-GISP-TVYTFGVVMKALCM---------VNEVDSACSLLRDMTKHGCVPN- 254 (681)
Q Consensus 192 l~~~-~~~~~~~~A~~----~~~~m~~~-~~~p-~~~~~~~ll~~~~~---------~g~~~~A~~~~~~~~~~~~~~~- 254 (681)
+... ...|+.+.|.+ +|++.+.. |..| +...|..++..... .|+++.|..+|++..+. +.+
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~--P~~~ 163 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN--PMIN 163 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS--CCTT
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc--hhhh
Confidence 6533 34567776665 55555443 4333 34455555555443 56667777777776652 111
Q ss_pred -hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH------HCC---CCCC
Q 040136 255 -SVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRML------VRG---FTPD 324 (681)
Q Consensus 255 -~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~------~~~---~~~~ 324 (681)
...|..........|. .+...++. ...+++..|..++.... +.. ++|+
T Consensus 164 ~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~ 221 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ 221 (530)
T ss_dssp HHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC
T ss_pred HHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCC
Confidence 1122211111000000 00011110 02233445554444321 111 1111
Q ss_pred cc-cHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHhCCCCCCHHHH
Q 040136 325 DI-TYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVIS----GRF----DEAKAIFYDSMLSVGCIPDVFTF 395 (681)
Q Consensus 325 ~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~----g~~----~~a~~~~~~~~~~~~~~p~~~~~ 395 (681)
.. .+... ...|...+...... ++. ..+.. +++..... .+-+...|
T Consensus 222 ~~~~~~~~------------------------~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~-~y~~al~~-~p~~~~~w 275 (530)
T 2ooe_A 222 NTPQEAQQ------------------------VDMWKKYIQWEKSNPLRTEDQTLITKRVMF-AYEQCLLV-LGHHPDIW 275 (530)
T ss_dssp --CCHHHH------------------------HHHHHHHHHHHHHCSSCCSCSHHHHHHHHH-HHHHHHHH-HTTCHHHH
T ss_pred CChhHHHH------------------------HHHHHHHHHHHHcCCccCCcchhHHHHHHH-HHHHHHHh-CCCCHHHH
Confidence 00 00000 11222222211111 111 24444 44444443 23466777
Q ss_pred HHHHHHHHh-------cCChh-------HHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040136 396 NILIHGLCK-------QRRFG-------SALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLN 461 (681)
Q Consensus 396 ~~ll~~~~~-------~~~~~-------~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 461 (681)
..++..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++++..
T Consensus 276 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~---- 351 (530)
T 2ooe_A 276 YEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE---- 351 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS----
T ss_pred HHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc----
Confidence 777777765 68877 899999998863234467888899999999999999999999998852
Q ss_pred ccccHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCHHHH
Q 040136 462 TGDRIEEALGLYQDMLLEGVTANT-VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKA-LCNAGAVDKG 539 (681)
Q Consensus 462 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A 539 (681)
+.+. ..|...+..+.+.|+.++|.++|++..+.. +.+...+...+.. +...|+.++|
T Consensus 352 --------------------p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 352 --------------------DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp --------------------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred --------------------ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHH
Confidence 1132 578888888889999999999999998763 3344444433322 3468999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040136 540 LGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRG-LTPD--IVTYNSLINGLCKMGCIQEALNLFDKL 616 (681)
Q Consensus 540 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 616 (681)
..+|+++++... .+...|..++..+.+.|+.++|..+|++.+..+ ..|+ ...|...+......|+.+.+..+++++
T Consensus 411 ~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 411 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999988642 367888999999999999999999999999863 2332 457888888888999999999999999
Q ss_pred HHC
Q 040136 617 QAE 619 (681)
Q Consensus 617 ~~~ 619 (681)
.+.
T Consensus 490 ~~~ 492 (530)
T 2ooe_A 490 FTA 492 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 885
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.79 E-value=6.2e-17 Score=163.37 Aligned_cols=300 Identities=14% Similarity=0.036 Sum_probs=215.3
Q ss_pred hcCCHHHHHH-HHhhcCC---C----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 040136 337 RTGRVDEARA-LLNKIPS---A----NVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRF 408 (681)
Q Consensus 337 ~~g~~~~A~~-~~~~~~~---~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 408 (681)
..|++++|.. .|++... . +...+..+...+...|++++|+. +++.+.... +.+...+..+...+...|++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~-~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVL-LFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHH-HHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 3456666666 6664443 1 23446667777777777777777 666666543 34667778888888888888
Q ss_pred hHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHH
Q 040136 409 GSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTY 488 (681)
Q Consensus 409 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 488 (681)
++|...++++.+.. +.+..++..+...|...|++++|...++++............... ... +.......+
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~ 185 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAE------EGA--GGAGLGPSK 185 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH------HHh--hhhcccHHH
Confidence 88888888887764 446777888888888888888888888888776432211000000 000 000000111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 489 NTLIHAFLRRGSLHEAHKLVNDMLFRGCPL--DEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLC 566 (681)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 566 (681)
.. +..+...|++++|...++++.+.. |. +..++..+...|...|++++|...|+++++.. +.+...+..++..+.
T Consensus 186 ~~-~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 262 (368)
T 1fch_A 186 RI-LGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLA 262 (368)
T ss_dssp CT-THHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HH-HHHHhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence 12 233348899999999999998874 33 68899999999999999999999999999864 336789999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------------HHHHHHHHHH
Q 040136 567 RTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD------------AVTYNTLISW 634 (681)
Q Consensus 567 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------------~~~~~~l~~~ 634 (681)
..|++++|++.++++.+.. +.+...+..+..++.+.|++++|...++++.+. .|+ ..+|..+..+
T Consensus 263 ~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (368)
T 1fch_A 263 NGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLA 339 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCccccccchhhHHHHHHHHH
Confidence 9999999999999998852 346788999999999999999999999999885 222 5789999999
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 040136 635 HFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~~ 653 (681)
|...|++++|..++++.++
T Consensus 340 ~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 340 LSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHTCGGGHHHHHTTCHH
T ss_pred HHHhCChHhHHHhHHHHHH
Confidence 9999999999998876553
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=6.1e-17 Score=163.41 Aligned_cols=254 Identities=10% Similarity=-0.071 Sum_probs=181.7
Q ss_pred CCChHHHHH-HHHHhhhCCCCCC--CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHH
Q 040136 91 PLDVDTSME-IFTWAGSQEGYCH--TFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQ 167 (681)
Q Consensus 91 ~~~~~~al~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 167 (681)
.++++.|+. .|+.+....+-.| +...+..+...+.+.|++++|...++++.+..+ .+..++..+...|.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHH
Confidence 478888888 8887665443323 345577788889999999999999999998875 477888899999999999999
Q ss_pred HHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHH---------------HHHHHHh
Q 040136 168 ATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGV---------------VMKALCM 232 (681)
Q Consensus 168 A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~---------------ll~~~~~ 232 (681)
|...|+++. ... +.+..++..+...+...|++++|...|++++..... +...+.. .+..+..
T Consensus 117 A~~~~~~al-~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 117 AISALRRCL-ELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHH-hcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 999999988 333 557888889999999999999999999999887532 2222221 1333337
Q ss_pred cCChhHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040136 233 VNEVDSACSLLRDMTKHGCVP--NSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAA 310 (681)
Q Consensus 233 ~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 310 (681)
.|++++|...++++.+.. +. +..++..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|+
T Consensus 194 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 778888888888877764 22 46777778888888888888888888877653 445677777777888888888888
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhc
Q 040136 311 KLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKI 351 (681)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 351 (681)
..++++.... +.+..++..+..+|.+.|++++|...|++.
T Consensus 272 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 311 (368)
T 1fch_A 272 AAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEA 311 (368)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888777652 224556666777777777777777766653
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=9e-17 Score=157.93 Aligned_cols=195 Identities=15% Similarity=0.112 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 040136 151 LFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKAL 230 (681)
Q Consensus 151 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 230 (681)
+|..|+.++.+.|++++|++.|.+. +|...|..++..+...|++++|+..++..++. .++..+.+.++.+|
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y 104 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHH
Confidence 4445555555555555555444321 23334444444444455555555533333332 22334444445555
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040136 231 CMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAA 310 (681)
Q Consensus 231 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 310 (681)
.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+ ..|..++.++.+.|++++|.
T Consensus 105 ~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AV 168 (449)
T 1b89_A 105 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 168 (449)
T ss_dssp ----CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHH
T ss_pred HHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHH
Confidence 55555544444442 133344555555555555555555555433 23444455555555555555
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHH
Q 040136 311 KLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKA 377 (681)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 377 (681)
+.+.++ .++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|++++|+.
T Consensus 169 ea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~ 228 (449)
T 1b89_A 169 DGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELIT 228 (449)
T ss_dssp HHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHH
Confidence 554444 134444445555555555555544333322 222222334444455555555544
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=9.8e-17 Score=157.66 Aligned_cols=290 Identities=15% Similarity=0.116 Sum_probs=129.9
Q ss_pred hCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHH
Q 040136 161 RGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSAC 240 (681)
Q Consensus 161 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 240 (681)
+.|+.++|.++++++. .| .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|.
T Consensus 15 ~~~~ld~A~~fae~~~-----~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-----EP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-----Ch--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 6788999999999986 34 48999999999999999999999652 57779999999999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040136 241 SLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRG 320 (681)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 320 (681)
..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988877764 4567889999999999999999988884 477789999999999999999999999976
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 040136 321 FTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIH 400 (681)
Q Consensus 321 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~ 400 (681)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|.. .... +...+.-...++.
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~-~~l~-----L~~~ad~l~~lv~ 215 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQM-CGLH-----IVVHADELEELIN 215 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHH-TTTT-----TTTCHHHHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHH-HHHH-----HHhCHhhHHHHHH
Confidence 48999999999999999999999998 489999999999999999999977 3222 2233344557888
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcC
Q 040136 401 GLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEG 480 (681)
Q Consensus 401 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 480 (681)
.|.+.|.+++|..+++...... +--...|+.+.-+|++.. +++..+.++....+ + ++.. +.+..
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~-p~k~~ehl~~~~~~-i------ni~k---~~~~~---- 279 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFWSR-V------NIPK---VLRAA---- 279 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTT-S------CHHH---HHHHH----
T ss_pred HHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHH-h------cCcH---HHHHH----
Confidence 9999999999999999988654 445778888888887753 33332222221111 0 0000 00000
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040136 481 VTANTVTYNTLIHAFLRRGSLHEAHKL 507 (681)
Q Consensus 481 ~~~~~~~~~~li~~~~~~g~~~~A~~~ 507 (681)
-+...|..+...|.+.++++.|...
T Consensus 280 --~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 280 --EQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp --HTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhhchHHHHHHH
Confidence 1455677777778888888877663
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=4e-17 Score=164.58 Aligned_cols=274 Identities=10% Similarity=-0.009 Sum_probs=209.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHH
Q 040136 356 VVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVD 435 (681)
Q Consensus 356 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 435 (681)
...+..++..+.+.|++++|+. +++.+.... +.+..++..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~-~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTIL-FMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHH-HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHH-HHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3457777777888888888888 666666543 3467788888999999999999999999988764 446788889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 040136 436 GFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRG 515 (681)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 515 (681)
+|...|++++|...|+++.+..... .. .+ .........+..+...+...|++++|.+.++++.+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~--------~~-~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 207 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKY--------KY-LV-----KNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN 207 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHH--------HC-C------------------------CCHHHHHHHHHHHHHHHHS
T ss_pred HHHccccHHHHHHHHHHHHHhCccc--------hH-HH-----hhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence 9999999999999998887752110 00 00 0000123345566888999999999999999999874
Q ss_pred CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 040136 516 CPL--DEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTY 593 (681)
Q Consensus 516 ~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 593 (681)
+. +..++..+...|...|++++|+..|+++++... .+..++..++.+|...|++++|++.++++++.. +.+..++
T Consensus 208 -p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 284 (365)
T 4eqf_A 208 -GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSR 284 (365)
T ss_dssp -CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred -cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHH
Confidence 44 788999999999999999999999999998743 368899999999999999999999999999852 3357889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-------------CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 040136 594 NSLINGLCKMGCIQEALNLFDKLQAEGIYP-------------DAVTYNTLISWHFKEGLFDDAFLILHKG 651 (681)
Q Consensus 594 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 651 (681)
..+..+|...|++++|+..|+++.+. .| +..+|..+..++...|+.+.|..+.++.
T Consensus 285 ~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 285 YNLGISCINLGAYREAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 99999999999999999999999885 22 2568899999999999999888876653
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=1.4e-16 Score=160.48 Aligned_cols=257 Identities=11% Similarity=0.013 Sum_probs=211.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHH
Q 040136 391 DVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEAL 470 (681)
Q Consensus 391 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~ 470 (681)
+...+..+...+.+.|++++|...++++.+.. +.+...+..+..+|.+.|++++|...|+++.+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------- 129 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ------------- 129 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------------
Confidence 44557888899999999999999999999874 4578899999999999999999999999988763
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----------HHHHHHHHHHHHcCCHHHHH
Q 040136 471 GLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDE----------ITYNGLIKALCNAGAVDKGL 540 (681)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~g~~~~A~ 540 (681)
+.+..++..+..+|...|++++|...++++.+.. +.+. ..+..+...+...|++++|.
T Consensus 130 -----------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 197 (365)
T 4eqf_A 130 -----------PNNLKALMALAVSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVK 197 (365)
T ss_dssp -----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHH
T ss_pred -----------CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHH
Confidence 2368899999999999999999999999998763 2222 23344578899999999999
Q ss_pred HHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 541 GLFEEMMRKGIK-PSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 541 ~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
..|+++.+.... .+..++..++..|...|++++|++.++++.+. .+.+..+|..+..+|...|++++|+..++++.+.
T Consensus 198 ~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 276 (365)
T 4eqf_A 198 ELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV-RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI 276 (365)
T ss_dssp HHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999987432 26889999999999999999999999999986 2446889999999999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHhcCccc
Q 040136 620 GIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPN-------------DATWYILVRNLVKEINME 677 (681)
Q Consensus 620 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-------------~~~~~~ll~~~~~~g~~~ 677 (681)
. +.+..++..+..+|.+.|++++|...++++++. .|+ ...|..+..++...|+.+
T Consensus 277 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 344 (365)
T 4eqf_A 277 Q-PGFIRSRYNLGISCINLGAYREAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE 344 (365)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHH
T ss_pred C-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence 2 335788999999999999999999999999973 232 577888888888888654
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=4.9e-15 Score=155.00 Aligned_cols=366 Identities=11% Similarity=0.011 Sum_probs=192.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhC--------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-
Q 040136 220 VYTFGVVMKALCMVNEVDSACSLLRDMTKH--------GCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILM-----G- 285 (681)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~- 285 (681)
...|+.+...+...|++++|++.|++..+. .-+....+|+.+..+|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345666666677777777777777665431 11223455666666666677777776666665431 0
Q ss_pred -CCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHH
Q 040136 286 -CTSDVQTFNDVIHGLCK--VNRIHEAAKLVDRMLVRGFTPD-DITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNT 361 (681)
Q Consensus 286 -~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 361 (681)
......++..+..++.. .+++++|+..|++.++.. |+ ...+..+..++..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~------------------------ 184 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYR------------------------ 184 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHH------------------------
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH------------------------
Confidence 01123344443333333 234666666666665542 22 2222222222111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHH
Q 040136 362 VINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCK----QRRFGSALELVNAMAVKGCEPNIVTYTILVDGF 437 (681)
Q Consensus 362 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 437 (681)
+...++.++|++ .++...+.. +.+...+..+...+.. .|++++|.+.+++..... +.+..++..+...|
T Consensus 185 ----l~~~~~~~~al~-~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~ 257 (472)
T 4g1t_A 185 ----LDNWPPSQNAID-PLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFY 257 (472)
T ss_dssp ----HHHSCCCCCTHH-HHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred ----hcCchHHHHHHH-HHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHH
Confidence 122233344444 333222221 1133333333322222 344555555555555442 23444555555556
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-------------------hc
Q 040136 438 CKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFL-------------------RR 498 (681)
Q Consensus 438 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------------------~~ 498 (681)
...|++++|...++++.+..+. +..++..+..+|. ..
T Consensus 258 ~~~~~~~~A~~~~~~al~~~p~------------------------~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~ 313 (472)
T 4g1t_A 258 RRKDEPDKAIELLKKALEYIPN------------------------NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLL 313 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT------------------------CHHHHHHHHHHHHHHHHHHHHC------CHHHHH
T ss_pred HHcCchHHHHHHHHHHHHhCCC------------------------hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 6666666666655555543211 2222322222221 12
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHHhcCCHHHHH
Q 040136 499 GSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSS--ISCNILIN-GLCRTRKANTAL 575 (681)
Q Consensus 499 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~ 575 (681)
+..+.|...++...+.. +.+..++..+...|...|++++|+..|+++++....+.. ..+..+.. .....|+.++|+
T Consensus 314 ~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai 392 (472)
T 4g1t_A 314 ELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAI 392 (472)
T ss_dssp HHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred hhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 34677888888887763 556677888999999999999999999999886443322 12233332 235678999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 040136 576 EFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANG 655 (681)
Q Consensus 576 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 655 (681)
..+++.++ +.|+...... ....+.+++++.++.+ +.+..+|..+..+|...|++++|++.|+++++.|
T Consensus 393 ~~y~kal~--i~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 393 HHFIEGVK--INQKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHH--SCCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHh--cCcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999988 4555433222 2344556666666653 4467889999999999999999999999999854
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.73 E-value=9.5e-16 Score=151.75 Aligned_cols=276 Identities=11% Similarity=-0.005 Sum_probs=198.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHH
Q 040136 359 LNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFC 438 (681)
Q Consensus 359 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 438 (681)
+..++..+...|++++|+. +++.+.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 24 ~~~~a~~~~~~~~~~~A~~-~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAAL-AFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHH-HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHH-HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 3444445555555555555 444444432 2356666777777777788888888777777653 335667777777788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHH-HH-HHHhcCCHHHHHHHHHHHHhCCC
Q 040136 439 KEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTL-IH-AFLRRGSLHEAHKLVNDMLFRGC 516 (681)
Q Consensus 439 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~A~~~~~~~~~~~~ 516 (681)
..|++++|...++++.+........... .. ...|+......+ .. .+...|++++|.+.++++.+..
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 168 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSV------NL-----QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN- 168 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC-------------------------------CCTTSHHHHHHHHHHHHHHHHHS-
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHH------Hh-----HHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-
Confidence 8888888888887777653221100000 00 000011111122 22 3678889999999999998874
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040136 517 PLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSL 596 (681)
Q Consensus 517 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 596 (681)
+.+..++..+...|...|++++|...++++.+... .+...+..++..+...|++++|.+.++++.+.. +.+...+..+
T Consensus 169 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 246 (327)
T 3cv0_A 169 PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNM 246 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 56888999999999999999999999999998743 367889999999999999999999999998852 3467889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 597 INGLCKMGCIQEALNLFDKLQAEGIYPD-------------AVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 597 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
..++...|++++|...++++.+. .|+ ..++..+..++.+.|++++|..++++.++
T Consensus 247 ~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 247 AVSYSNMSQYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999999885 343 67888999999999999999999876654
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=1.9e-15 Score=145.88 Aligned_cols=272 Identities=11% Similarity=0.106 Sum_probs=156.4
Q ss_pred HHhcCCHHHHHHHHhhcCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 040136 335 LCRTGRVDEARALLNKIPSANV----VLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGS 410 (681)
Q Consensus 335 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 410 (681)
....|++..|+..++++...++ .....+..+|...|++++|+. -++. ..+|+..++..+...+...++.++
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~-~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLD-EIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHH-HSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHH-Hhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 3445555555555555444221 123344556666666666655 2221 234455566666666666667777
Q ss_pred HHHHHHHHHhcCCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHH
Q 040136 411 ALELVNAMAVKGCEP-NIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYN 489 (681)
Q Consensus 411 A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 489 (681)
|.+.++++...+..| +...+..+...+.+.|++++|...+++ +.+...+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----------------------------~~~~~~~~ 134 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----------------------------GDSLECMA 134 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----------------------------CCSHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----------------------------CCCHHHHH
Confidence 777777666554333 444555555666677777777766654 12556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 490 TLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITY--NGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCR 567 (681)
Q Consensus 490 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 567 (681)
.++..+.+.|++++|.+.++++.+.. |.+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+
T Consensus 135 ~l~~~~~~~g~~~~A~~~l~~~~~~~-p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~ 212 (291)
T 3mkr_A 135 MTVQILLKLDRLDLARKELKKMQDQD-EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMA 212 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 66677777777777777777766653 2221111 112233334466777777777777653 3366667777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 040136 568 TRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQE-ALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFL 646 (681)
Q Consensus 568 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 646 (681)
.|++++|.+.+++.++.. +-+..++..++..+...|+.++ +.++++++.+. .|+... +.+...+.+.++++..
T Consensus 213 ~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 213 QGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLVL 286 (291)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHHH
Confidence 777777777777766642 2355666677777777777654 45677777663 454332 2234555556666554
Q ss_pred HH
Q 040136 647 IL 648 (681)
Q Consensus 647 ~~ 648 (681)
-|
T Consensus 287 ~~ 288 (291)
T 3mkr_A 287 QY 288 (291)
T ss_dssp HH
T ss_pred Hc
Confidence 43
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=2.9e-15 Score=144.56 Aligned_cols=258 Identities=10% Similarity=0.093 Sum_probs=206.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcC
Q 040136 364 NGYVISGRFDEAKAIFYDSMLSVGCIPDV--FTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEG 441 (681)
Q Consensus 364 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 441 (681)
+-....|++.+|+. ..+.... ..|+. .....+.++|...|+++.|...++. .-+|+..++..+...+...+
T Consensus 7 ~~~~~~g~y~~ai~-~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 7 KNAFYIGSYQQCIN-EAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHTTCHHHHHH-HHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHH-HHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 44667899999999 6554433 23333 3456678899999999999986654 23567788888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 040136 442 QLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEI 521 (681)
Q Consensus 442 ~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 521 (681)
+.++|.+.++++...+.. +.+...+..+..++...|++++|++.+++ +.+..
T Consensus 80 ~~~~A~~~l~~ll~~~~~----------------------P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~ 131 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVD----------------------VTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLE 131 (291)
T ss_dssp THHHHHHHHHHHHHSCCC----------------------CSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHH
T ss_pred cHHHHHHHHHHHHhcccC----------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHH
Confidence 999999999988775321 22667778888999999999999999987 56888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISC---NILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLIN 598 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 598 (681)
.+..++..|.+.|++++|...|+++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..
T Consensus 132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~ 208 (291)
T 3mkr_A 132 CMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAA 208 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHH
Confidence 99999999999999999999999999874 443221 22334445569999999999999987 4568889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHHCCCCCCHHH
Q 040136 599 GLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDD-AFLILHKGVANGFVPNDAT 662 (681)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~g~~~~~~~ 662 (681)
++.+.|++++|+..++++++.. +-+..++..++..+...|+.++ +.++++++++ +.|+...
T Consensus 209 ~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~ 270 (291)
T 3mkr_A 209 CHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPF 270 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChH
Confidence 9999999999999999999862 3367789999999999999976 5789999998 5576544
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=2.1e-17 Score=175.17 Aligned_cols=153 Identities=13% Similarity=0.099 Sum_probs=127.6
Q ss_pred CCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHH---CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH
Q 040136 182 QPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLS---KGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVY 258 (681)
Q Consensus 182 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 258 (681)
..-..+||++|++|++.|+.++|.++|.+|.+ .|+.||..|||+||++||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 44567899999999999999999999988764 478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------cccHHHH
Q 040136 259 QTLIHALSKSNRV-SEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPD------DITYGVL 331 (681)
Q Consensus 259 ~~li~~~~~~~~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l 331 (681)
|++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.+..+. .+++.++++ ..++.|+ ..+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 9999999999985 78999999999999999999999988765443 444444444 3344444 4555667
Q ss_pred HHHHHhcC
Q 040136 332 MHGLCRTG 339 (681)
Q Consensus 332 ~~~~~~~g 339 (681)
.+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 77777655
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=2e-15 Score=149.46 Aligned_cols=262 Identities=10% Similarity=-0.023 Sum_probs=182.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 040136 328 YGVLMHGLCRTGRVDEARALLNKIPS---ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCK 404 (681)
Q Consensus 328 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 404 (681)
+..+...+...|++++|..+|+++.. .+...+..++..+...|++++|.+ .++...... +.+...+..+...+..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAII-ALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 33344444444444444444444332 233444555555555555555555 444444432 3356667777777777
Q ss_pred cCChhHHHHHHHHHHhcCCCcCHhhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHH
Q 040136 405 QRRFGSALELVNAMAVKGCEPNIVTYTIL--------------VD-GFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEA 469 (681)
Q Consensus 405 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------l~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a 469 (681)
.|++++|...++.+.+.. +.+...+..+ .. .+...|++++|...++++.+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------ 168 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN------------ 168 (327)
T ss_dssp TTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS------------
T ss_pred cCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC------------
Confidence 888888888877777652 2222233332 11 2555566666666666665542
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 040136 470 LGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK 549 (681)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (681)
+.+...+..+...|...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+.
T Consensus 169 ------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 169 ------------PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp ------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 2377889999999999999999999999998874 667889999999999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 550 GIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTP-----------DIVTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 550 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
.. .+...+..+...+...|++++|.+.++++.+..... +...|..+..++.+.|++++|..++++..+
T Consensus 236 ~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 236 NP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred CC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 43 367889999999999999999999999998752221 467889999999999999999999876544
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=3.1e-14 Score=148.90 Aligned_cols=387 Identities=12% Similarity=-0.060 Sum_probs=237.3
Q ss_pred CCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhh---c
Q 040136 111 CHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEE--------GIICRESLFILIMKYYGRGGVPGQATRLLLDMKSV---Y 179 (681)
Q Consensus 111 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~ 179 (681)
......|+.+..++...|++++|.+.|++..+. ..+....+|..+..+|...|++++|...++++..- .
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344567888888999999999999999887552 11223457788899999999999999988876521 1
Q ss_pred CC---CCCHHhHHHHHHHHHh--cCCcCcHHHHHHHHHHCCCCCChhhHHHHHHH---HHhcCChhHHHHHHHHHHhCCC
Q 040136 180 GC---QPTFRSYNVVLDVLVA--GNCHKVAPNLFYDMLSKGISPTVYTFGVVMKA---LCMVNEVDSACSLLRDMTKHGC 251 (681)
Q Consensus 180 ~~---~~~~~~~~~ll~~~~~--~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~---~~~~g~~~~A~~~~~~~~~~~~ 251 (681)
.. .....++..+..++.. .+++++|+..|++.++.... +...+..+..+ +...++.++|++.+++..+.+
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 11 1234556555555554 35688999999998886422 34444444444 345677888999998888765
Q ss_pred CCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccc
Q 040136 252 VPNSVVYQTLIHALSK----SNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDIT 327 (681)
Q Consensus 252 ~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 327 (681)
+.+..++..+...+.. .|+.++|.+.+++..... +.+...+..+...+...|++++|...++++.+.. +-+..+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHH
Confidence 4556666666555544 467788999999888764 5567788888999999999999999999988763 224556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 040136 328 YGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRR 407 (681)
Q Consensus 328 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 407 (681)
+..+..+|...+....+... ..........+..++|.. .++...... +.+...+..+...+...|+
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~------------~~~~~~~~~~~~~~~A~~-~~~~a~~~~-~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRE------------NGMYGKRKLLELIGHAVA-HLKKADEAN-DNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------------------CHHHHHHHHHHHHH-HHHHHHHHC-TTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhhHHH------------HHHHHHHHHHhhHHHHHH-HHHHHhhcC-CchhhhhhhHHHHHHHhcc
Confidence 66666665432211111100 000001111233456666 555544433 2345567788889999999
Q ss_pred hhHHHHHHHHHHhcCCCcCH--hhHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCC
Q 040136 408 FGSALELVNAMAVKGCEPNI--VTYTILVD-GFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTAN 484 (681)
Q Consensus 408 ~~~A~~~~~~~~~~~~~~~~--~~~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 484 (681)
+++|...|++..+....+.. ..+..+.. .....|++++|+..|.+.++.. |+
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~-------------------------~~ 404 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN-------------------------QK 404 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC-------------------------CC
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------------------------cc
Confidence 99999999998876433221 12223332 2346788888888888877753 22
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 040136 485 TVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKG 550 (681)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 550 (681)
..... +....+.++++..+... |.+..+|..+..+|...|++++|+..|+++++.+
T Consensus 405 ~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 405 SREKE---------KMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp CHHHH---------HHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred cHHHH---------HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 22111 11233445555555543 6677788888888888888999999998888764
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.69 E-value=4.1e-17 Score=172.94 Aligned_cols=119 Identities=15% Similarity=0.132 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 040136 519 DEITYNGLIKALCNAGAVDKGLGLFEEMMR---KGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNS 595 (681)
Q Consensus 519 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 595 (681)
-..+|++||++||+.|++++|..+|++|.+ .|..||.+|||+||++||+.|++++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 344566666666666666666666555442 25556666666666666666666666666666666666666666666
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 596 LINGLCKMGC-IQEALNLFDKLQAEGIYPDAVTYNTLISWHFK 637 (681)
Q Consensus 596 l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 637 (681)
+|.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 6666665555 34555666666666666666666655544433
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.66 E-value=2.4e-14 Score=147.74 Aligned_cols=372 Identities=12% Similarity=0.045 Sum_probs=184.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040136 228 KALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRV---SEALMLLEEMILMGCTSDVQTFNDVIHGLCKVN 304 (681)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 304 (681)
..+.+.|++++|.++|++..+.| +..++..+...|...|+. ++|.+.|++..+. +...+..+...+...+
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred HHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 33344455555555555544433 222333333444444444 4555555544432 2233333333232222
Q ss_pred -----CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHH---HHHHHhhcCC-CChHHHHHHHHHHHhcCCHHHH
Q 040136 305 -----RIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDE---ARALLNKIPS-ANVVLLNTVINGYVISGRFDEA 375 (681)
Q Consensus 305 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a 375 (681)
++++|+.++++..+.|. ...+..|...|...+..+. +.+.+.+... .++..+..|...|...+.++++
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGG
T ss_pred CCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccC
Confidence 44555555555554432 2244444444444333222 2222222211 3344555555555555544443
Q ss_pred HHH---HHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhc----CCHHH
Q 040136 376 KAI---FYDSMLSVGCIPDVFTFNILIHGLCKQR---RFGSALELVNAMAVKGCEPNIVTYTILVDGFCKE----GQLEK 445 (681)
Q Consensus 376 ~~~---~~~~~~~~~~~p~~~~~~~ll~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----g~~~~ 445 (681)
.+. +++.... .+...+..+...|...| +.++|...|+...+.| +++...+..+...|... +++++
T Consensus 161 ~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 161 LDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp HHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 331 2222221 12225666666676677 7777777777777765 33444445555555433 46666
Q ss_pred HHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 040136 446 ANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHA-F--LRRGSLHEAHKLVNDMLFRGCPLDEIT 522 (681)
Q Consensus 446 A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~ 522 (681)
|...|++.. .+ +...+..+... + ...+++++|.+.|++..+.| +...
T Consensus 236 A~~~~~~aa-~g--------------------------~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A 285 (452)
T 3e4b_A 236 AQALLEKIA-PG--------------------------YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRA 285 (452)
T ss_dssp HHHHHHHHG-GG--------------------------STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHc-CC--------------------------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 666665554 22 45555556555 3 45677888888888877765 5566
Q ss_pred HHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 040136 523 YNGLIKALCNAG-----AVDKGLGLFEEMMRKGIKPSSISCNILINGLCR----TRKANTALEFLRDMIHRGLTPDIVTY 593 (681)
Q Consensus 523 ~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~ 593 (681)
+..|...|. .| ++++|..+|++.. .| +...+..|...|.. ..+.++|.+.|++..+.|. ....
T Consensus 286 ~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~ 357 (452)
T 3e4b_A 286 ELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSAD 357 (452)
T ss_dssp HHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHH
T ss_pred HHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHH
Confidence 666666666 44 7888888887777 33 56666667766655 3377888888888777653 2334
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 594 NSLINGLCK----MGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 594 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
..|...|.. ..+.++|...|+...+.| .++.......+......++..+|..+.++..+
T Consensus 358 ~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 358 FAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 455555553 347788888888887766 22322222222222233455566666665544
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.64 E-value=2.4e-14 Score=147.69 Aligned_cols=280 Identities=13% Similarity=0.018 Sum_probs=154.6
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCh---HHHHHHHHHcHhhcCCCCCHHhHHHHHHHHH
Q 040136 120 LIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVP---GQATRLLLDMKSVYGCQPTFRSYNVVLDVLV 196 (681)
Q Consensus 120 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 196 (681)
+...+.+.|++++|.++|++..+.| +...+..|...|...|+. ++|..+|++.. . .++..+..+...+.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~-~----~~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAA-D----TSPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC---------------------------------CHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHH-h----CCHHHHHHHHHHHH
Confidence 5566677888888888888887776 344556666667777777 78888888877 2 25566666666555
Q ss_pred hcC-----CcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 040136 197 AGN-----CHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVD---SACSLLRDMTKHGCVPNSVVYQTLIHALSKS 268 (681)
Q Consensus 197 ~~~-----~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 268 (681)
..+ ++++|+..|++..+.|. ...+..|...|...+..+ ++.+.+......| +...+..+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 554 56788888888888663 236666777766655433 3455555555444 356677777778777
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc----CCH
Q 040136 269 NRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVN---RIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRT----GRV 341 (681)
Q Consensus 269 ~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~ 341 (681)
+.++++.+....+.+.....+...+..|...+...| +.++|++.|++..+.|.. +...+..+..+|... +++
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCH
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCH
Confidence 766555554333332222233447777777787888 888888888888877632 444445566666544 577
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----ChhHHHH
Q 040136 342 DEARALLNKIPSANVVLLNTVING-Y--VISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQR-----RFGSALE 413 (681)
Q Consensus 342 ~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-----~~~~A~~ 413 (681)
++|...|++....++..+..|... | ...++.++|++ +++...+.| +...+..+...|. .| ++++|..
T Consensus 234 ~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~-~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 234 KTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMK-YLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHH-HHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 777777766553344455555554 2 34556666666 444444443 4444444444444 33 5555555
Q ss_pred HHHHHH
Q 040136 414 LVNAMA 419 (681)
Q Consensus 414 ~~~~~~ 419 (681)
+|++..
T Consensus 309 ~~~~Aa 314 (452)
T 3e4b_A 309 HFEKAV 314 (452)
T ss_dssp HHHTTT
T ss_pred HHHHHh
Confidence 555544
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=3.1e-14 Score=131.13 Aligned_cols=200 Identities=15% Similarity=0.043 Sum_probs=132.1
Q ss_pred CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 040136 424 EPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHE 503 (681)
Q Consensus 424 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 503 (681)
+++...+..+...+.+.|++++|...|++.++.. +.+...+..+..++.+.|++++
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------------p~~~~a~~~lg~~~~~~g~~~~ 57 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN------------------------PQDPEALYWLARTQLKLGLVNP 57 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS------------------------SSCHHHHHHHHHHHHHTTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------CCCHHHHHHHHHHHHHcCCHHH
Confidence 3455566666666777777777777776666543 2256666677777777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 040136 504 AHKLVNDMLFRGCPLDEITYNGLIKALCNA-----------GAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKAN 572 (681)
Q Consensus 504 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 572 (681)
|+..+++.++.. |.+...+..+..++... |++++|+..|+++++..+. +...+..+..++...|+++
T Consensus 58 A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~ 135 (217)
T 2pl2_A 58 ALENGKTLVART-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERD 135 (217)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChH
Confidence 777777776663 55666777777777777 8888888888888776432 5677777888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 573 TALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGV 652 (681)
Q Consensus 573 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (681)
+|+..+++.++.. .+...+..+..++...|++++|+..++++.+.. +.+...+..+..++...|++++|...+++..
T Consensus 136 ~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 136 KAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8888888888765 577777788888888888888888888888752 3346677778888888888888888777664
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=7.4e-14 Score=132.72 Aligned_cols=241 Identities=15% Similarity=0.102 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHH
Q 040136 392 VFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALG 471 (681)
Q Consensus 392 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~ 471 (681)
...+..+...+...|++++|...+++..+.. .+...+..+..++...|++++|...++++.+....
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------------ 70 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE------------ 70 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc------------
Confidence 3456677778888888888888888888776 67778888888899999999998888887664210
Q ss_pred HHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040136 472 LYQDMLLEGVTAN----TVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMM 547 (681)
Q Consensus 472 ~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 547 (681)
..++ ..++..+..+|...|++++|...++++... .|+. ..+...|++++|...++++.
T Consensus 71 ---------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~ 132 (258)
T 3uq3_A 71 ---------MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEA 132 (258)
T ss_dssp ---------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred ---------cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHH
Confidence 0011 578889999999999999999999999986 3443 44667788999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 040136 548 RKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVT 627 (681)
Q Consensus 548 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 627 (681)
.... .+...+..++..+...|++++|.+.++++.+.. +.+...+..+..++...|++++|+..++++.+.. +.+...
T Consensus 133 ~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~ 209 (258)
T 3uq3_A 133 YVNP-EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRA 209 (258)
T ss_dssp HCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HcCc-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHH
Confidence 8632 256778899999999999999999999999863 3467889999999999999999999999999863 445788
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCCHHHHHHHH
Q 040136 628 YNTLISWHFKEGLFDDAFLILHKGVANG----FVPNDATWYILV 667 (681)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g----~~~~~~~~~~ll 667 (681)
+..+..++.+.|++++|...++++++.. ..|+.......+
T Consensus 210 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l 253 (258)
T 3uq3_A 210 YIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 253 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHH
Confidence 9999999999999999999999999732 116655444433
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=2.7e-13 Score=128.82 Aligned_cols=225 Identities=13% Similarity=0.128 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--cC----HhhH
Q 040136 357 VLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCE--PN----IVTY 430 (681)
Q Consensus 357 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~ 430 (681)
..+..+...+...|++++|+. +++...+.. .+...+..+...+...|++++|...++...+.... ++ ...+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~-~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIE-HYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH-HHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHH-HHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 456777888888888888888 666666655 67888999999999999999999999998875211 11 5788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040136 431 TILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVND 510 (681)
Q Consensus 431 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 510 (681)
..+...+...|++++|...|+++.+.. |+. ..+...|++++|...++.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------------------~~~-------~~~~~~~~~~~a~~~~~~ 130 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH-------------------------RTA-------DILTKLRNAEKELKKAEA 130 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------CCH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC-------------------------chh-------HHHHHHhHHHHHHHHHHH
Confidence 899999999999999999999888752 332 346677889999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 040136 511 MLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDI 590 (681)
Q Consensus 511 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 590 (681)
+.... +.+...+..+...+...|++++|...|+++.+... .+...+..++..+...|++++|++.+++.++.. +.+.
T Consensus 131 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~ 207 (258)
T 3uq3_A 131 EAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFV 207 (258)
T ss_dssp HHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHH
Confidence 98873 55777888999999999999999999999998743 367889999999999999999999999999863 3457
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 591 VTYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
..|..+..++...|++++|...++++.+.
T Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 208 RAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 88999999999999999999999999885
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.60 E-value=1.3e-13 Score=126.85 Aligned_cols=201 Identities=15% Similarity=0.026 Sum_probs=155.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHH
Q 040136 389 IPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEE 468 (681)
Q Consensus 389 ~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 468 (681)
+++...+..+...+.+.|++++|...+++..+.. +.+...+..+..++.+.|++++|...|++.++..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~----------- 69 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART----------- 69 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------
Confidence 3456677777788888888888888888887763 4467778888888888888888888888877753
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 040136 469 ALGLYQDMLLEGVTANTVTYNTLIHAFLRR-----------GSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVD 537 (681)
Q Consensus 469 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 537 (681)
+.+...+..+..++... |++++|+..+++.++.. |.+...+..+..+|...|+++
T Consensus 70 -------------P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~ 135 (217)
T 2pl2_A 70 -------------PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERD 135 (217)
T ss_dssp -------------TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred -------------CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChH
Confidence 22667778888888888 99999999999999874 667889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 538 KGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQ 617 (681)
Q Consensus 538 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 617 (681)
+|+..|+++++.. .+...+..+..+|...|++++|+..+++.++.. +.+...+..+..++...|++++|+..+++..
T Consensus 136 ~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 136 KAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999987 688999999999999999999999999999852 3367888899999999999999999998775
Q ss_pred H
Q 040136 618 A 618 (681)
Q Consensus 618 ~ 618 (681)
.
T Consensus 213 ~ 213 (217)
T 2pl2_A 213 H 213 (217)
T ss_dssp -
T ss_pred h
Confidence 4
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=4.5e-12 Score=121.54 Aligned_cols=224 Identities=14% Similarity=0.014 Sum_probs=174.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCccccH
Q 040136 391 DVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCK----EGQLEKANIIINEMLAKGLSLNTGDRI 466 (681)
Q Consensus 391 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 466 (681)
+..++..+...+...|++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 45566666777777778888888887777632 45566777777777 777887777777766642
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHH
Q 040136 467 EEALGLYQDMLLEGVTANTVTYNTLIHAFLR----RGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCN----AGAVDK 538 (681)
Q Consensus 467 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 538 (681)
+...+..+...|.. .+++++|++.+++..+.+ +...+..+...|.. .+++++
T Consensus 73 -----------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~ 132 (273)
T 1ouv_A 73 -----------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKK 132 (273)
T ss_dssp -----------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred -----------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHH
Confidence 66677777778888 888888888888888764 66778888888888 888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 040136 539 GLGLFEEMMRKGIKPSSISCNILINGLCR----TRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCK----MGCIQEAL 610 (681)
Q Consensus 539 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 610 (681)
|...|+++.+.+ +...+..+...|.. .+++++|++.+++..+.+ +...+..+...|.. .+++++|+
T Consensus 133 A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~ 206 (273)
T 1ouv_A 133 AVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEAL 206 (273)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHH
T ss_pred HHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 888888888865 56677778888877 888899999988888753 45677778888888 88999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 040136 611 NLFDKLQAEGIYPDAVTYNTLISWHFK----EGLFDDAFLILHKGVANG 655 (681)
Q Consensus 611 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g 655 (681)
..+++..+.+ +...+..+...|.+ .+++++|.+.++++.+.|
T Consensus 207 ~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 207 ARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 9999888854 36677788888888 888999999999988855
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.58 E-value=7.4e-13 Score=125.36 Aligned_cols=210 Identities=14% Similarity=0.027 Sum_probs=170.8
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040136 427 IVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHK 506 (681)
Q Consensus 427 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 506 (681)
...+..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------------------------~~~~~~~~~la~~~~~~~~~~~A~~ 92 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID------------------------PSSADAHAALAVVFQTEMEPKLADE 92 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC------------------------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------------------------CChHHHHHHHHHHHHHcCCHHHHHH
Confidence 4567777788888888888888888877653 2367788888889999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040136 507 LVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKP-SSISCNILINGLCRTRKANTALEFLRDMIHRG 585 (681)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 585 (681)
.++++.+.. +.+...+..+...|...|++++|..+++++.+.+..| +...+..++..+...|++++|.+.++++.+..
T Consensus 93 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (252)
T 2ho1_A 93 EYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN 171 (252)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999988774 5578888889999999999999999999998733334 45778888889999999999999999988753
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 040136 586 LTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYI 665 (681)
Q Consensus 586 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 665 (681)
+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.++++++.+. .|+......
T Consensus 172 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~ 247 (252)
T 2ho1_A 172 -RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQE 247 (252)
T ss_dssp -SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHH
T ss_pred -cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHH
Confidence 3357788889999999999999999999998752 445777888888999999999999999999884 465554443
No 45
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.57 E-value=9.6e-11 Score=124.72 Aligned_cols=457 Identities=11% Similarity=0.047 Sum_probs=283.9
Q ss_pred ChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC---hhHHH
Q 040136 164 VPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNE---VDSAC 240 (681)
Q Consensus 164 ~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~---~~~A~ 240 (681)
...+.+..|++.... . +.|...|..++..+.+.+.++.+..+|++++.. .+.....|...+..-.+.|+ .+.+.
T Consensus 47 ~~~d~i~~lE~~l~~-n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 47 DESDVIGKLNDMIEE-Q-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CCSCHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred CCHHHHHHHHHHHHH-C-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 344555555555522 2 678889999999988889999999999999887 34466778888888888888 99999
Q ss_pred HHHHHHHhCC-CCCChhhHHHHHHHHHhcCCh--------hHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHH-------
Q 040136 241 SLLRDMTKHG-CVPNSVVYQTLIHALSKSNRV--------SEALMLLEEMIL-MGC-TSD-VQTFNDVIHGLC------- 301 (681)
Q Consensus 241 ~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~--------~~A~~~~~~m~~-~~~-~~~-~~~~~~li~~~~------- 301 (681)
.+|+...... .+|++..|...+....+.++. +.+.++|+..+. .|. .++ ...|...+....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 9999988763 137888888888776665543 234467776554 455 443 466777665433
Q ss_pred --hcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 040136 302 --KVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIF 379 (681)
Q Consensus 302 --~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 379 (681)
..++.+.+..+|++++......-..+|......-...+. ..+..++.+. ...++.|.. .
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~-----------------~~~y~~Ar~-~ 264 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL-----------------SAQYMNARS-L 264 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH-----------------HHHHHHHHH-H
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh-----------------hHHHHHHHH-H
Confidence 234567788888888742111111222211111101011 0111111110 011222222 2
Q ss_pred HHHHHh--CCC----C-----------C-----C---HHHHHHHHHHHHhcC-------ChhHHHHHHHHHHhcCCCcCH
Q 040136 380 YDSMLS--VGC----I-----------P-----D---VFTFNILIHGLCKQR-------RFGSALELVNAMAVKGCEPNI 427 (681)
Q Consensus 380 ~~~~~~--~~~----~-----------p-----~---~~~~~~ll~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~ 427 (681)
+..+.. .++ + | + ...|...+..--..+ ....+..+|++.+.. ++-..
T Consensus 265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~ 343 (679)
T 4e6h_A 265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAP 343 (679)
T ss_dssp HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCH
T ss_pred HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCH
Confidence 221110 010 0 1 0 123444443322222 123345667777665 24467
Q ss_pred hhHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040136 428 VTYTILVDGFCKEGQLEKAN-IIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHK 506 (681)
Q Consensus 428 ~~~~~ll~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 506 (681)
..|...+..+...|+.++|. .+|+..... .+.+...|...+...-+.|++++|.+
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~------------------------~P~s~~Lwl~~a~~ee~~~~~e~aR~ 399 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQC------------------------IPNSAVLAFSLSEQYELNTKIPEIET 399 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHH------------------------CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHh------------------------CCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 77777777777778877775 777776654 23356667778888888899999999
Q ss_pred HHHHHHhCC----------CCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 507 LVNDMLFRG----------CPL-----------DEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGL 565 (681)
Q Consensus 507 ~~~~~~~~~----------~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 565 (681)
+|+.++... .|. ...+|...+....+.|+.+.|..+|.++++.-.......|...+..-
T Consensus 400 iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE 479 (679)
T 4e6h_A 400 TILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIE 479 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 998887641 121 23467777777778889999999999998761112234443333333
Q ss_pred Hhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChh
Q 040136 566 CRT-RKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYP--DAVTYNTLISWHFKEGLFD 642 (681)
Q Consensus 566 ~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~ 642 (681)
.+. ++.+.|.++|+..++. .+-+...|...++.....|+.+.|..+|++++.....+ ....|...+..-.+.|+.+
T Consensus 480 ~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~ 558 (679)
T 4e6h_A 480 YHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLN 558 (679)
T ss_dssp HTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSH
T ss_pred HHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 344 4589999999998886 44466777788888888899999999999998863211 3457888888888899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 643 DAFLILHKGVANGFVPNDATWYILVRNL 670 (681)
Q Consensus 643 ~A~~~~~~~~~~g~~~~~~~~~~ll~~~ 670 (681)
.+.++.+++.+. .|+......+.+.|
T Consensus 559 ~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 559 SVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 999999999983 46555545554443
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=8.5e-13 Score=126.55 Aligned_cols=242 Identities=12% Similarity=0.018 Sum_probs=168.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHH
Q 040136 394 TFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLY 473 (681)
Q Consensus 394 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~ 473 (681)
.+......+...|++++|...+++..+.. +.+...+..+..+|...|++++|...++++.+....
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------------- 69 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNA-------------- 69 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCT--------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCc--------------
Confidence 34455666777788888888887777653 234557777777788888888888777777663210
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 040136 474 QDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKP 553 (681)
Q Consensus 474 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 553 (681)
.......|..+...+...|++++|.+.+++..+.. +.+..++..+...|...|++++|...|+++++.. +.
T Consensus 70 -------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~ 140 (272)
T 3u4t_A 70 -------TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TT 140 (272)
T ss_dssp -------TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CC
T ss_pred -------hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CC
Confidence 11134457777788888888888888888877763 5566778888888888888888888888887763 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC-----
Q 040136 554 SSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGC---IQEALNLFDKLQAEG-IYPD----- 624 (681)
Q Consensus 554 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~----- 624 (681)
+...+..+...+...+++++|.+.++++.+.. +.+...+..+..++...|+ +++|+..++++.+.. -.|+
T Consensus 141 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 219 (272)
T 3u4t_A 141 DPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDE 219 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHH
Confidence 55666666634444558888888888888752 2346667777777777777 777888888877641 1133
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 040136 625 -AVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDAT 662 (681)
Q Consensus 625 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 662 (681)
..+|..+...|...|++++|.+.++++++ +.|+...
T Consensus 220 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~ 256 (272)
T 3u4t_A 220 LIEANEYIAYYYTINRDKVKADAAWKNILA--LDPTNKK 256 (272)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCccHHH
Confidence 24677788888888888888888888887 4455433
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=1.5e-12 Score=120.75 Aligned_cols=210 Identities=13% Similarity=0.037 Sum_probs=134.7
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040136 426 NIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAH 505 (681)
Q Consensus 426 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 505 (681)
+...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------------~~~~~~~~~l~~~~~~~~~~~~A~ 62 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD------------------------PKNELAWLVRAEIYQYLKVNDKAQ 62 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC------------------------ccchHHHHHHHHHHHHcCChHHHH
Confidence 34455566666666666666666666665542 124556666666677777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 506 KLVNDMLFRGCPLDEITYNGLIKALCNA-GAVDKGLGLFEEMMRKGIKPS-SISCNILINGLCRTRKANTALEFLRDMIH 583 (681)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 583 (681)
+.++++.+.. +.+..++..+...+... |++++|...++++.+.+..|+ ...+..++..+...|++++|++.++++.+
T Consensus 63 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 63 ESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777766653 44566666677777777 777777777777766222222 45666677777777777777777777766
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 040136 584 RGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIY-PDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDAT 662 (681)
Q Consensus 584 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 662 (681)
.. +.+...+..+..++...|++++|...++++.+.. + .+...+..+...+...|+.++|..+++.+.+ ..|+...
T Consensus 142 ~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~ 217 (225)
T 2vq2_A 142 AQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYSEE 217 (225)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred hC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHH
Confidence 42 2245667777777777777777777777777642 2 3555666666667777777777777777765 2355444
Q ss_pred HH
Q 040136 663 WY 664 (681)
Q Consensus 663 ~~ 664 (681)
..
T Consensus 218 ~~ 219 (225)
T 2vq2_A 218 LQ 219 (225)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.56 E-value=1.3e-11 Score=118.40 Aligned_cols=224 Identities=12% Similarity=-0.021 Sum_probs=185.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCcCHhhH
Q 040136 355 NVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCK----QRRFGSALELVNAMAVKGCEPNIVTY 430 (681)
Q Consensus 355 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 430 (681)
++.++..+...|...|++++|++ +++...+. -+...+..+...+.. .+++++|...+++..+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~-~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKK-YFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHH-HHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 45566677777888888888888 66666653 356677778888888 999999999999988875 67788
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHH
Q 040136 431 TILVDGFCK----EGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLR----RGSLH 502 (681)
Q Consensus 431 ~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~ 502 (681)
..+...|.. .+++++|...|++..+.+ +...+..+...|.. .++++
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------------------------~~~a~~~lg~~~~~~~~~~~~~~ 131 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK--------------------------YAEGCASLGGIYHDGKVVTRDFK 131 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------------------------CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--------------------------CccHHHHHHHHHHcCCCcccCHH
Confidence 888888888 889999888888877653 67788888888988 99999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 040136 503 EAHKLVNDMLFRGCPLDEITYNGLIKALCN----AGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCR----TRKANTA 574 (681)
Q Consensus 503 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 574 (681)
+|++.+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|
T Consensus 132 ~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A 205 (273)
T 1ouv_A 132 KAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEA 205 (273)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred HHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 9999999998875 56677888888888 899999999999999874 56788888999999 9999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 040136 575 LEFLRDMIHRGLTPDIVTYNSLINGLCK----MGCIQEALNLFDKLQAEG 620 (681)
Q Consensus 575 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 620 (681)
++.+++..+.+ +...+..+...|.. .+++++|++.+++..+.|
T Consensus 206 ~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 206 LARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 99999999863 36677788888888 899999999999999864
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=1.4e-12 Score=129.99 Aligned_cols=248 Identities=12% Similarity=0.065 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCccccHHHHHH
Q 040136 393 FTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQ-LEKANIIINEMLAKGLSLNTGDRIEEALG 471 (681)
Q Consensus 393 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~a~~ 471 (681)
..|..+...+...|++++|+..+++.+... +-+...|..+..++...|+ +++|+..|++++...
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-------------- 162 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-------------- 162 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--------------
Confidence 445666666777778888888888777663 3356677777777777885 888888777777653
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 040136 472 LYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGI 551 (681)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 551 (681)
+.+...|..+..++...|++++|+..|+++++.. +-+..+|..+..++.+.|++++|+..|+++++...
T Consensus 163 ----------P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P 231 (382)
T 2h6f_A 163 ----------PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV 231 (382)
T ss_dssp ----------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred ----------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 2266778888888888888888888888888764 56777888888888888888888888888888653
Q ss_pred CCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCC
Q 040136 552 KPSSISCNILINGLCR-TRKANTA-----LEFLRDMIHRGLTPDIVTYNSLINGLCKMG--CIQEALNLFDKLQAEGIYP 623 (681)
Q Consensus 552 ~p~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p 623 (681)
. +...|+.+..++.. .|..++| ++.+++.++.. +-+...|..+..++...| ++++|++.++++ +. -..
T Consensus 232 ~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~ 307 (382)
T 2h6f_A 232 R-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHS 307 (382)
T ss_dssp T-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCC
T ss_pred C-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCC
Confidence 3 67778888888877 5554666 47777777742 225667777777777777 578888888777 32 233
Q ss_pred CHHHHHHHHHHHHhcC---------ChhHHHHHHHHH-HHCCCCCCH-HHHHHHHHHHHh
Q 040136 624 DAVTYNTLISWHFKEG---------LFDDAFLILHKG-VANGFVPND-ATWYILVRNLVK 672 (681)
Q Consensus 624 ~~~~~~~l~~~~~~~g---------~~~~A~~~~~~~-~~~g~~~~~-~~~~~ll~~~~~ 672 (681)
+...+..++.+|.+.| .+++|.++++++ .+ +.|.. ..|..+...+..
T Consensus 308 ~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 308 SPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHH
Confidence 4667777888887764 257888888888 65 45543 455555555543
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.55 E-value=3.9e-12 Score=120.31 Aligned_cols=207 Identities=13% Similarity=-0.005 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHH
Q 040136 392 VFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALG 471 (681)
Q Consensus 392 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~ 471 (681)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------
Confidence 3456667777888888888888888887763 3456778888888888888888888888877653
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 040136 472 LYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGC-PLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKG 550 (681)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 550 (681)
+.+...+..+...|...|++++|.+.++++...+. +.+...+..+...+...|++++|...++++.+..
T Consensus 102 ----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (252)
T 2ho1_A 102 ----------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN 171 (252)
T ss_dssp ----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 23667788888888999999999999998887322 3466778888888999999999999999988864
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 040136 551 IKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVT 627 (681)
Q Consensus 551 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 627 (681)
. .+...+..++..+...|++++|.+.++++.+. .+.+...+..+...+...|++++|.++++++.+. .|+...
T Consensus 172 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~ 244 (252)
T 2ho1_A 172 R-NQPSVALEMADLLYKEREYVPARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLE 244 (252)
T ss_dssp S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHH
T ss_pred c-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHH
Confidence 3 35788888999999999999999999998875 3346677888888889999999999999999885 455443
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=5e-13 Score=125.69 Aligned_cols=199 Identities=16% Similarity=0.150 Sum_probs=122.9
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040136 427 IVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHK 506 (681)
Q Consensus 427 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 506 (681)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~------------------------~~~~~~~~~la~~~~~~~~~~~A~~ 78 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN------------------------KEDAIPYINFANLLSSVNELERALA 78 (243)
T ss_dssp -------------------CCTTHHHHHTTC------------------------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC------------------------cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 3445555555666666666666666655532 2245566666666777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040136 507 LVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGL 586 (681)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 586 (681)
.++++.+.. +.+..++..+...|...|++++|...++++.+... .+...+..++..+...|++++|.+.++++.+..
T Consensus 79 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 155 (243)
T 2q7f_A 79 FYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN- 155 (243)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-
Confidence 777766653 44666677777777777777777777777776532 255666777777777777777777777776642
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 587 TPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 587 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
+.+...+..+..++...|++++|+..++++.+.. +.+..++..++.+|...|++++|...++++++
T Consensus 156 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 156 ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 3356667777777777777777777777777652 33466777777777778888888888887776
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.54 E-value=1.8e-12 Score=124.27 Aligned_cols=246 Identities=11% Similarity=0.020 Sum_probs=184.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcC--HhhHHHHHHH
Q 040136 359 LNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPN--IVTYTILVDG 436 (681)
Q Consensus 359 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~ 436 (681)
+......+...|++++|+. .++...+.. +.+...+..+...+...|++++|...++...+....++ ...|..+...
T Consensus 6 ~~~~a~~~~~~~~~~~A~~-~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIE-VFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHH-HHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHH-HHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 4455666777777777777 666665543 22445777888888999999999999999887431121 2347888889
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 040136 437 FCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGC 516 (681)
Q Consensus 437 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 516 (681)
+...|++++|...|+++.+.. +.+...+..+...|...|++++|.+.+++..+. .
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~ 138 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD------------------------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-T 138 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-S
T ss_pred HHHcccHHHHHHHHHHHHhcC------------------------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-C
Confidence 999999999999998887753 236678889999999999999999999998887 3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC---
Q 040136 517 PLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRK---ANTALEFLRDMIHRG-LTPD--- 589 (681)
Q Consensus 517 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~--- 589 (681)
+.+...+..+...+...+++++|...|+++++... .+...+..+..++...|+ +++|...+++..+.. ..|+
T Consensus 139 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 217 (272)
T 3u4t_A 139 TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK 217 (272)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccch
Confidence 66777888887344455699999999999998643 246778888888888888 888999998887641 1133
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 040136 590 ---IVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISW 634 (681)
Q Consensus 590 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 634 (681)
...|..+...|...|++++|++.++++.+. .|+ ...+..+...
T Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 218 DELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CccHHHHHHHhhhh
Confidence 256778889999999999999999999985 454 4444444433
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.54 E-value=2.2e-12 Score=128.62 Aligned_cols=245 Identities=9% Similarity=-0.001 Sum_probs=191.5
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-hHHHHHHHHHcHhhcCCCCCHHhHHHHH
Q 040136 114 FDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGV-PGQATRLLLDMKSVYGCQPTFRSYNVVL 192 (681)
Q Consensus 114 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~ll 192 (681)
...|..+..++...|++++|...++++++..+ .+..+|..+..++.+.|+ +++|+..|+++. ... +.+...|+.+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al-~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAII-EEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-HHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHH-HHC-CCCHHHHHHHH
Confidence 45667777788889999999999999998875 478889999999999996 999999999988 333 55678889999
Q ss_pred HHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCCh
Q 040136 193 DVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSK-SNRV 271 (681)
Q Consensus 193 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~ 271 (681)
.++...|++++|+..|+++++.... +...|..+..++.+.|++++|+..++++++.+ +.+..+|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999987533 67888889999999999999999999999876 5678889999999988 5665
Q ss_pred hHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC-----
Q 040136 272 SEA-----LMLLEEMILMGCTSDVQTFNDVIHGLCKVN--RIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTG----- 339 (681)
Q Consensus 272 ~~A-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 339 (681)
++| ++.+++.++.. +-+...|..+...+...| ++++|++.+.++ +. .+.+...+..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 777 47888887764 456778888888888877 688888888887 32 2334567778888887764
Q ss_pred ----CHHHHHHHHhhc-CCCCh---HHHHHHHHHH
Q 040136 340 ----RVDEARALLNKI-PSANV---VLLNTVINGY 366 (681)
Q Consensus 340 ----~~~~A~~~~~~~-~~~~~---~~~~~l~~~~ 366 (681)
..++|+++|+++ .+.|+ ..|..+...+
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 257788888777 44332 3455544433
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.52 E-value=3.5e-13 Score=129.50 Aligned_cols=248 Identities=8% Similarity=-0.062 Sum_probs=182.0
Q ss_pred CCCChHHHHHHHHHhhhCCCCC--CCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHH
Q 040136 90 LPLDVDTSMEIFTWAGSQEGYC--HTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQ 167 (681)
Q Consensus 90 ~~~~~~~al~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 167 (681)
..++++.|+..|+.+....+.. .+...+..+..++...|++++|...|+++.+.++ .+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 4578999999999887753322 2456788888899999999999999999998875 477888999999999999999
Q ss_pred HHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 168 ATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMT 247 (681)
Q Consensus 168 A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 247 (681)
|...|+++.. .. +.+...+..+..++...|++++|...|+++.+.. |+.......+..+...|++++|...+....
T Consensus 96 A~~~~~~al~-~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLE-LD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHH-HC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999883 22 4567788888899999999999999999988863 444444455555667789999999998777
Q ss_pred hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040136 248 KHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCT---SDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPD 324 (681)
Q Consensus 248 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 324 (681)
... +++...+ .++..+...++.++|.+.+++....... .+...+..+...+...|++++|...++++.... |+
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~ 247 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VH 247 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CT
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--ch
Confidence 654 3444444 4677777788888888888887653211 114677778888888888888888888887652 32
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHH
Q 040136 325 DITYGVLMHGLCRTGRVDEARALL 348 (681)
Q Consensus 325 ~~~~~~l~~~~~~~g~~~~A~~~~ 348 (681)
. +.....++...|++++|++.+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 2 223344566667777666554
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=1.4e-12 Score=122.70 Aligned_cols=211 Identities=12% Similarity=0.083 Sum_probs=151.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHH
Q 040136 391 DVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEAL 470 (681)
Q Consensus 391 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~ 470 (681)
....+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------------- 87 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD------------- 87 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------
Confidence 44556667777888888888888888887753 4467778888888888888888888888877653
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 040136 471 GLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKG 550 (681)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 550 (681)
+.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 88 -----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 155 (243)
T 2q7f_A 88 -----------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155 (243)
T ss_dssp -----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred -----------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 2367778888888888999999999998888764 5577788888888899999999999999888764
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHH
Q 040136 551 IKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYN 629 (681)
Q Consensus 551 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~ 629 (681)
. .+...+..++..+...|++++|.+.++++.+.. +.+..++..+..++...|++++|...++++.+. .|+ ...+.
T Consensus 156 ~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~ 231 (243)
T 2q7f_A 156 E-NDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI--QPDHMLALH 231 (243)
T ss_dssp T-TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH--CTTCHHHHH
T ss_pred C-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CcchHHHHH
Confidence 3 367788888888999999999999999888752 345778888888999999999999999999885 444 44444
Q ss_pred HH
Q 040136 630 TL 631 (681)
Q Consensus 630 ~l 631 (681)
.+
T Consensus 232 ~~ 233 (243)
T 2q7f_A 232 AK 233 (243)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.52 E-value=6.8e-12 Score=116.21 Aligned_cols=210 Identities=11% Similarity=-0.006 Sum_probs=161.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHH
Q 040136 391 DVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEAL 470 (681)
Q Consensus 391 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~ 470 (681)
+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------- 72 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK------------- 72 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------------
Confidence 44566777778888888888888888877753 3456778888888888888888888888877653
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040136 471 GLYQDMLLEGVTANTVTYNTLIHAFLRR-GSLHEAHKLVNDMLFRGC-PLDEITYNGLIKALCNAGAVDKGLGLFEEMMR 548 (681)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 548 (681)
+.+..++..+...+... |++++|...++++.+.+. +.+...+..+...+...|++++|...++++.+
T Consensus 73 -----------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 73 -----------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp -----------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23667788888888888 999999999988887322 33467788888888999999999999999888
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 040136 549 KGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTY 628 (681)
Q Consensus 549 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 628 (681)
... .+...+..++..+...|++++|.+.++++.+.....+...+..+...+...|+.++|..+++.+.+. .|+....
T Consensus 142 ~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~ 218 (225)
T 2vq2_A 142 AQP-QFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEEL 218 (225)
T ss_dssp HST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred hCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHH
Confidence 643 2577888888899999999999999998887532146677777777888899999999999988764 4554433
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.51 E-value=1.2e-12 Score=125.68 Aligned_cols=218 Identities=10% Similarity=-0.089 Sum_probs=128.0
Q ss_pred hCCChHHHHHHHHHcHhhcCC--CCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhH
Q 040136 161 RGGVPGQATRLLLDMKSVYGC--QPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDS 238 (681)
Q Consensus 161 ~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 238 (681)
..|++++|+..|+++...... +.+...+..+...+...|++++|...|++.++.+. .+..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 345566666666666521110 11344556666666666666666666666666532 245666667777777777777
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 239 ACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLV 318 (681)
Q Consensus 239 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 318 (681)
|...|+++.+.. +.+..++..+..++...|++++|.+.++++.+.. |+.......+..+...|++++|...+.+...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 777777776654 3456667777777777777777777777776643 3333333344444566777777777766665
Q ss_pred CCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCC-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 040136 319 RGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSAN-------VVLLNTVINGYVISGRFDEAKAIFYDSMLS 385 (681)
Q Consensus 319 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (681)
.. +++.. ...++..+...++.++|...+.+....+ ...+..++..|...|++++|.. .++....
T Consensus 173 ~~-~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~ 243 (275)
T 1xnf_A 173 KS-DKEQW-GWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATA-LFKLAVA 243 (275)
T ss_dssp HS-CCCST-HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHT
T ss_pred cC-CcchH-HHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHH-HHHHHHh
Confidence 42 22323 3335666666677777777776655522 2344555555555555555555 4444443
No 58
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.50 E-value=4e-10 Score=120.02 Aligned_cols=153 Identities=10% Similarity=0.037 Sum_probs=106.1
Q ss_pred ChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC---hHHHH
Q 040136 93 DVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGV---PGQAT 169 (681)
Q Consensus 93 ~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~ 169 (681)
.+...+..|+..+..++ .+...|..++..+.+.+.++.+..+++.+...-+ .....|...+..-.+.|+ .+.+.
T Consensus 47 ~~~d~i~~lE~~l~~np--~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP-~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQP--TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFP-LMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CCSCHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred CCHHHHHHHHHHHHHCc--CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 34445555666566554 6788888888888888899999999999888764 577888888888888888 89999
Q ss_pred HHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCc--------CcHHHHHHHHHHC-CC-CCC-hhhHHHHHHHHHh------
Q 040136 170 RLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCH--------KVAPNLFYDMLSK-GI-SPT-VYTFGVVMKALCM------ 232 (681)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--------~~A~~~~~~m~~~-~~-~p~-~~~~~~ll~~~~~------ 232 (681)
.+|++.......+|++..|...+....+.++. +.+.++|+..+.. |. .++ ...|...+.....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 99998883321247888888888877666554 2234677776553 55 443 4567666665432
Q ss_pred ---cCChhHHHHHHHHHHh
Q 040136 233 ---VNEVDSACSLLRDMTK 248 (681)
Q Consensus 233 ---~g~~~~A~~~~~~~~~ 248 (681)
.++++.+..+|+.+..
T Consensus 204 ~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHHHh
Confidence 3346778888888775
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.50 E-value=5.5e-12 Score=112.81 Aligned_cols=173 Identities=17% Similarity=0.105 Sum_probs=153.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILIN 563 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 563 (681)
++.+|..+...|.+.|++++|++.|++.++.. |.+..++..+..+|.+.|++++|...+..+...... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 77889999999999999999999999999884 668899999999999999999999999999887533 6778888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 040136 564 GLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDD 643 (681)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 643 (681)
.+...++++.|.+.+.+.... .+.+...+..+..++.+.|++++|++.|+++.+.. +.+..+|..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL-NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 999999999999999999885 23467889999999999999999999999999863 4457889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHH
Q 040136 644 AFLILHKGVANGFVPNDAT 662 (681)
Q Consensus 644 A~~~~~~~~~~g~~~~~~~ 662 (681)
|.+.|+++++ +.|+...
T Consensus 160 A~~~~~~al~--~~p~~a~ 176 (184)
T 3vtx_A 160 AVKYFKKALE--KEEKKAK 176 (184)
T ss_dssp HHHHHHHHHH--TTHHHHH
T ss_pred HHHHHHHHHh--CCccCHH
Confidence 9999999998 5566543
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.47 E-value=2e-12 Score=132.39 Aligned_cols=276 Identities=14% Similarity=0.081 Sum_probs=202.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhc----CC-CcCHhh
Q 040136 359 LNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDV----FTFNILIHGLCKQRRFGSALELVNAMAVK----GC-EPNIVT 429 (681)
Q Consensus 359 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~ 429 (681)
+..+...+...|++++|+. +++....... .+. ..+..+...+...|++++|...+++..+. +. +.....
T Consensus 51 l~~~g~~~~~~g~~~~A~~-~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVA-FFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHH-HHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHH-HHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3345566777777777777 5555555432 232 46777788888899999999988887653 11 223567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---------
Q 040136 430 YTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGS--------- 500 (681)
Q Consensus 430 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--------- 500 (681)
+..+...|...|++++|...++++.+. ..... .......++..+...|...|+
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~----------------~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 190 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTL----------------ARQLG--DRLSEGRALYNLGNVYHAKGKHLGQRNPGK 190 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----------------HHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH----------------HHHhh--chHHHHHHHHHHHHHHHHcCcccccccchh
Confidence 888888999999999999998876653 11110 011234578888899999999
Q ss_pred --------HHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHH
Q 040136 501 --------LHEAHKLVNDMLFR----GC-PLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIK-PS----SISCNILI 562 (681)
Q Consensus 501 --------~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~ 562 (681)
+++|.+.+++..+. +. +....++..+...|...|++++|...++++.+.... .+ ...+..+.
T Consensus 191 ~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 270 (411)
T 4a1s_A 191 FGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLG 270 (411)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 99999998887553 11 223457888889999999999999999998764111 12 23788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC--CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHH
Q 040136 563 NGLCRTRKANTALEFLRDMIHRG--LT---PDIVTYNSLINGLCKMGCIQEALNLFDKLQAE----GIYP-DAVTYNTLI 632 (681)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~~~--~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~ 632 (681)
..|...|++++|.+.+++..+.. .. ....++..+..++...|++++|...++++.+. +..+ ...++..+.
T Consensus 271 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 350 (411)
T 4a1s_A 271 NSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLG 350 (411)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 99999999999999999887631 10 11467888999999999999999999998874 1111 134778899
Q ss_pred HHHHhcCChhHHHHHHHHHHHC
Q 040136 633 SWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
.+|...|++++|.+.++++++.
T Consensus 351 ~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 351 NAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHH
Confidence 9999999999999999999873
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.46 E-value=3.3e-12 Score=130.42 Aligned_cols=307 Identities=14% Similarity=0.085 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----cccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHH
Q 040136 290 VQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPD----DITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVING 365 (681)
Q Consensus 290 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 365 (681)
...+......+...|++++|...++++.+.+.. + ..++..+...+...|++++|...+++...
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------------ 75 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT------------ 75 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------------
Confidence 334444555555566666666666655554211 1 12344455555555555555555444211
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCC-cCHhhHHHHHHHHHh
Q 040136 366 YVISGRFDEAKAIFYDSMLSVGCIP-DVFTFNILIHGLCKQRRFGSALELVNAMAVK----GCE-PNIVTYTILVDGFCK 439 (681)
Q Consensus 366 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~ 439 (681)
.....+..| ...++..+...+...|++++|...+++..+. +-. ....++..+...|..
T Consensus 76 ----------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (406)
T 3sf4_A 76 ----------------LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 139 (406)
T ss_dssp ----------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 111111111 1234455555666666666666666655442 100 013467777777888
Q ss_pred cCC--------------------HHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 040136 440 EGQ--------------------LEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRG 499 (681)
Q Consensus 440 ~g~--------------------~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 499 (681)
.|+ +++|...+.+... +..... .......++..+...|...|
T Consensus 140 ~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~----------------~~~~~~--~~~~~~~~~~~la~~~~~~g 201 (406)
T 3sf4_A 140 KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLS----------------LVTALG--DRAAQGRAFGNLGNTHYLLG 201 (406)
T ss_dssp HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHH----------------HHHHTT--CHHHHHHHHHHHHHHHHHHT
T ss_pred cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH----------------HHHhcc--CcHHHHHHHHHHHHHHHHcc
Confidence 888 7777766655443 222110 01113457888889999999
Q ss_pred CHHHHHHHHHHHHhCC----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcC
Q 040136 500 SLHEAHKLVNDMLFRG----CP-LDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIK-PS----SISCNILINGLCRTR 569 (681)
Q Consensus 500 ~~~~A~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g 569 (681)
++++|...+++..+.. .+ ....++..+...|...|++++|...++++.+.... .+ ..++..+...|...|
T Consensus 202 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 281 (406)
T 3sf4_A 202 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 281 (406)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhC
Confidence 9999999999887541 11 12347888889999999999999999998764111 11 467788999999999
Q ss_pred CHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcC
Q 040136 570 KANTALEFLRDMIHR----GLTP-DIVTYNSLINGLCKMGCIQEALNLFDKLQAE----GIYP-DAVTYNTLISWHFKEG 639 (681)
Q Consensus 570 ~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g 639 (681)
++++|.+.+++..+. +..+ ...++..+..++...|++++|...+++..+. +..+ ...++..+...+...|
T Consensus 282 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (406)
T 3sf4_A 282 DYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLG 361 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhh
Confidence 999999999998763 1111 1457788899999999999999999998764 2112 2456777888888888
Q ss_pred ChhH
Q 040136 640 LFDD 643 (681)
Q Consensus 640 ~~~~ 643 (681)
+...
T Consensus 362 ~~~~ 365 (406)
T 3sf4_A 362 LSYS 365 (406)
T ss_dssp TTSC
T ss_pred HhHH
Confidence 7643
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.45 E-value=5.6e-12 Score=128.66 Aligned_cols=300 Identities=15% Similarity=0.053 Sum_probs=215.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCc-CH
Q 040136 357 VLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPD----VFTFNILIHGLCKQRRFGSALELVNAMAVK----GCEP-NI 427 (681)
Q Consensus 357 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~ 427 (681)
..+......+...|++++|+. +++...... +.+ ...+..+...+...|++++|...+++.... +..| ..
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~-~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVS-FFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH-HHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHH-HHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344555666777777777777 555555442 223 246777888888999999999998886543 2122 24
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-------
Q 040136 428 VTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGS------- 500 (681)
Q Consensus 428 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------- 500 (681)
.++..+...|...|++++|...+.+..+. ..... .......++..+...|...|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----------------~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 149 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDI----------------SRELN--DKVGEARALYNLGNVYHAKGKSFGCPGP 149 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------HHHHT--CHHHHHHHHHHHHHHHHHHHHTCC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------HHhcc--cccchHHHHHHHHHHHHHcCCccccccc
Confidence 57888888999999999999999877653 11110 001124578888899999999
Q ss_pred -------------HHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHH
Q 040136 501 -------------LHEAHKLVNDMLFR----GC-PLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGI-KPS----SIS 557 (681)
Q Consensus 501 -------------~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~ 557 (681)
+++|.+.+++.... +. +....++..+...|...|++++|...++++.+... .++ ..+
T Consensus 150 ~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 229 (406)
T 3sf4_A 150 QDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRA 229 (406)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 99999998887543 11 12345788888999999999999999999876411 112 247
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHH
Q 040136 558 CNILINGLCRTRKANTALEFLRDMIHR----GLTPD-IVTYNSLINGLCKMGCIQEALNLFDKLQAEGI-YPD----AVT 627 (681)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~ 627 (681)
+..+...|...|++++|...+++..+. +..+. ..++..+...+...|++++|...++++.+..- ..+ ..+
T Consensus 230 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 309 (406)
T 3sf4_A 230 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRA 309 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 888999999999999999999998753 11111 46778899999999999999999999887410 111 557
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCcc
Q 040136 628 YNTLISWHFKEGLFDDAFLILHKGVAN----GFVP-NDATWYILVRNLVKEINM 676 (681)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~~-~~~~~~~ll~~~~~~g~~ 676 (681)
+..+..+|...|++++|...++++++. |..+ ...++..+...+...|+.
T Consensus 310 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 310 CWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 788999999999999999999998763 2112 134566677777776654
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=5.8e-12 Score=124.76 Aligned_cols=276 Identities=15% Similarity=0.089 Sum_probs=201.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCc-CHhh
Q 040136 359 LNTVINGYVISGRFDEAKAIFYDSMLSVGCIPD----VFTFNILIHGLCKQRRFGSALELVNAMAVK----GCEP-NIVT 429 (681)
Q Consensus 359 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~ 429 (681)
+......+...|++++|+. +++...... +.+ ...+..+...+...|++++|...+++..+. +..+ ...+
T Consensus 8 l~~~g~~~~~~g~~~~A~~-~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVS-FFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHH-HHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHH-HHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3445566777788888888 666655543 223 356777888888999999999998886543 2122 2557
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---------
Q 040136 430 YTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGS--------- 500 (681)
Q Consensus 430 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--------- 500 (681)
+..+...+...|++++|...+.+..+.. ... ........++..+...|...|+
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 147 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDIS----------------REL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQD 147 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------HHT--TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC-
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHH----------------HHh--cCchHHHHHHHHHHHHHHHcCcccccchhhh
Confidence 7888889999999999999988876531 110 0001124477888889999999
Q ss_pred -----------HHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHH
Q 040136 501 -----------LHEAHKLVNDMLFR----G-CPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGI-KPS----SISCN 559 (681)
Q Consensus 501 -----------~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~ 559 (681)
+++|.+.+++.... + .+....++..+...+...|++++|...++++.+... .++ ..++.
T Consensus 148 ~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (338)
T 3ro2_A 148 TGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYS 227 (338)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 99999998886543 1 122345778888999999999999999999876411 011 24788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHH
Q 040136 560 ILINGLCRTRKANTALEFLRDMIHR----GLTP-DIVTYNSLINGLCKMGCIQEALNLFDKLQAE----GIYP-DAVTYN 629 (681)
Q Consensus 560 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~ 629 (681)
.+...+...|++++|.+.+++..+. +..+ ...++..+...+...|++++|...++++.+. +-.+ ...++.
T Consensus 228 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 307 (338)
T 3ro2_A 228 NLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACW 307 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 8899999999999999999998753 1111 1457788889999999999999999998774 1111 144778
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC
Q 040136 630 TLISWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
.+...|.+.|++++|...++++++.
T Consensus 308 ~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 308 SLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHH
Confidence 8999999999999999999999873
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.43 E-value=1.7e-10 Score=112.46 Aligned_cols=219 Identities=11% Similarity=0.100 Sum_probs=172.4
Q ss_pred hHHHHHHHHHHhcCCCcCHhhHHHHHHHHHh-------cCCH-------HHHHHHHHHHHHCCCCCCccccHHHHHHHHH
Q 040136 409 GSALELVNAMAVKGCEPNIVTYTILVDGFCK-------EGQL-------EKANIIINEMLAKGLSLNTGDRIEEALGLYQ 474 (681)
Q Consensus 409 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 474 (681)
++|...|++..... +.+...|..++..+.. .|++ ++|..+|++.+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~------------------ 93 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST------------------ 93 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT------------------
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH------------------
Confidence 57778888887752 4467778777777653 4665 6666666666552
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 040136 475 DMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEI-TYNGLIKALCNAGAVDKGLGLFEEMMRKGIKP 553 (681)
Q Consensus 475 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 553 (681)
. .+.+...|..++..+.+.|++++|.++|+++++.. |.+.. +|..++..+.+.|++++|..+|+++++... +
T Consensus 94 ----~-~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~ 166 (308)
T 2ond_A 94 ----L-LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-T 166 (308)
T ss_dssp ----T-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-C
T ss_pred ----h-CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-C
Confidence 1 12366789999999999999999999999999863 33444 899999999999999999999999998743 3
Q ss_pred CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHH
Q 040136 554 SSISCNILINGLC-RTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEG-IYP--DAVTYN 629 (681)
Q Consensus 554 ~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~ 629 (681)
+...|...+.... ..|++++|.++|++.++. .+-+...|..++..+.+.|++++|+.+|+++++.. +.| +...|.
T Consensus 167 ~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~ 245 (308)
T 2ond_A 167 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA 245 (308)
T ss_dssp CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 4555544443322 379999999999999885 23467889999999999999999999999999963 455 367889
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC
Q 040136 630 TLISWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
.++..+.+.|+.++|..+++++.+.
T Consensus 246 ~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 246 RFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999984
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.43 E-value=3.9e-11 Score=107.17 Aligned_cols=171 Identities=15% Similarity=0.066 Sum_probs=132.3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040136 426 NIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAH 505 (681)
Q Consensus 426 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 505 (681)
+..+|..+...|.+.|++++|...|++.++.++ -+...+..+..+|.+.|++++|.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p------------------------~~~~~~~~la~~~~~~~~~~~a~ 59 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP------------------------NNVETLLKLGKTYMDIGLPNDAI 59 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------------------------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------------------CCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777788888888888888888877776532 26677788888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040136 506 KLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRG 585 (681)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 585 (681)
..+....... +.+...+..+...+...++++.|...+.++.+... .+...+..+...+...|++++|++.+++.++..
T Consensus 60 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~ 137 (184)
T 3vtx_A 60 ESLKKFVVLD-TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK 137 (184)
T ss_dssp HHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc
Confidence 8888877763 55677777777888888888888888888887643 367778888888888888888888888888752
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 040136 586 LTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDA 625 (681)
Q Consensus 586 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 625 (681)
+.+..+|..+..++.+.|++++|++.|+++++. .|+.
T Consensus 138 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~ 174 (184)
T 3vtx_A 138 -PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK--EEKK 174 (184)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--THHH
T ss_pred -chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC--CccC
Confidence 335677888888888888888888888888873 5554
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.41 E-value=1.1e-11 Score=126.82 Aligned_cols=97 Identities=14% Similarity=0.227 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHC----C-CCCCHH
Q 040136 221 YTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNS----VVYQTLIHALSKSNRVSEALMLLEEMILM----G-CTSDVQ 291 (681)
Q Consensus 221 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~-~~~~~~ 291 (681)
..+..+...+...|++++|...|+++.+.+ +.+. .++..+...|...|++++|.+.+++..+. + .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 344455566777788888888887777754 2232 35667777777778888887777776542 1 112234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 292 TFNDVIHGLCKVNRIHEAAKLVDRMLV 318 (681)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 318 (681)
.+..+...+...|++++|...++++..
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 154 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLT 154 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566666667777777777777766654
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.39 E-value=2.7e-11 Score=119.91 Aligned_cols=98 Identities=15% Similarity=0.135 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHH
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRKGIK-PS----SISCNILINGLCRTRKANTALEFLRDMIHR----GLTP-DIV 591 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~ 591 (681)
++..+...+...|++++|...++++.+.... .+ ..++..+...+...|++++|.+.+++..+. +..+ ...
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 4445555555566666666655555432100 01 345556666666667777666666665542 1011 133
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 592 TYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
++..+..++.+.|++++|...++++.+.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 5666777777777777777777777663
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.39 E-value=1.7e-11 Score=127.29 Aligned_cols=215 Identities=11% Similarity=0.012 Sum_probs=160.6
Q ss_pred hhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHH
Q 040136 408 FGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQL-EKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTV 486 (681)
Q Consensus 408 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 486 (681)
++++...++...... +.+...+..+...+...|++ ++|...|+++++.. +.+..
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~------------------------p~~~~ 138 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE------------------------PELVE 138 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC------------------------TTCHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC------------------------CCCHH
Confidence 455556666554432 33567777777888888888 88888888777653 22567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCCCHHH
Q 040136 487 TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNA---------GAVDKGLGLFEEMMRKGIKPSSIS 557 (681)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~ 557 (681)
.|..+..+|...|++++|.+.|++..+. .|+...+..+...|... |++++|+..|+++++.... +...
T Consensus 139 a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~ 215 (474)
T 4abn_A 139 AWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRS 215 (474)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHH
Confidence 7888888888888888888888888876 35567788888888888 8888888888888886432 5777
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 040136 558 CNILINGLCRT--------RKANTALEFLRDMIHRGLT--PDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVT 627 (681)
Q Consensus 558 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 627 (681)
|..+..+|... |++++|++.|++.++.... -+...|..+..+|...|++++|++.|+++.+.. +.+...
T Consensus 216 ~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a 294 (474)
T 4abn_A 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEP 294 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 88888888887 8888888888888874210 367788888888888888888888888888752 334567
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 040136 628 YNTLISWHFKEGLFDDAFLILHKG 651 (681)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~ 651 (681)
+..+..++...|++++|.+.+.++
T Consensus 295 ~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 295 QQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 788888888888888887755433
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.38 E-value=4.9e-10 Score=109.26 Aligned_cols=219 Identities=13% Similarity=0.063 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------hcCCh-------hHHHHHHHHHHhcCCCcCHhhHHHHHHHHH
Q 040136 373 DEAKAIFYDSMLSVGCIPDVFTFNILIHGLC-------KQRRF-------GSALELVNAMAVKGCEPNIVTYTILVDGFC 438 (681)
Q Consensus 373 ~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 438 (681)
++|.. .++...... +-+...|..++..+. +.|++ ++|..+|++..+.-.+.+...|..++..+.
T Consensus 33 ~~a~~-~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMF-AYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHH-HHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45666 555555432 346667777776665 35776 899999999887312345678889999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 040136 439 KEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTV-TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCP 517 (681)
Q Consensus 439 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 517 (681)
+.|++++|..+|+++++..+ .+.. .|..++..+.+.|++++|..+|++.++.. +
T Consensus 111 ~~~~~~~A~~~~~~al~~~p------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p 165 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIED------------------------IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-R 165 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSS------------------------SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-T
T ss_pred hcCCHHHHHHHHHHHHhccc------------------------cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 99999999999988887521 1343 78888999999999999999999999874 4
Q ss_pred CCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHH
Q 040136 518 LDEITYNGLIKALC-NAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRG-LTP--DIVTY 593 (681)
Q Consensus 518 ~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~ 593 (681)
.+...|........ ..|++++|..+|+++++... .+...|..++..+.+.|++++|..+|++.++.. +.| ....|
T Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~ 244 (308)
T 2ond_A 166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 244 (308)
T ss_dssp CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 55666654444332 36999999999999988643 367888999999999999999999999999863 455 46788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 594 NSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 594 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
..++..+.+.|+.+.|..+++++.+.
T Consensus 245 ~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 245 ARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88999999999999999999999985
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.38 E-value=4.1e-11 Score=121.15 Aligned_cols=129 Identities=12% Similarity=0.061 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHH
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRK----GI-KPSSISCNILINGLCRTRKANTALEFLRDMIHR----GLTPDIVT 592 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~ 592 (681)
++..+..+|...|++++|...++++.+. +. .....++..+...+...|++++|.+.+++..+. +-+.....
T Consensus 226 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 305 (383)
T 3ulq_A 226 TLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE 305 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444444444455555555554444431 11 112334444555555555555555555544431 00111122
Q ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 593 YNSLINGLCKMGC---IQEALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 593 ~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
+..+...+...|+ +++|+.++++. +..|+ ...+..+...|...|++++|...++++++
T Consensus 306 ~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 306 FEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444445555555 44444444443 11222 23444555555566666666665555554
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.38 E-value=5.2e-11 Score=123.51 Aligned_cols=203 Identities=14% Similarity=0.052 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040136 466 IEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSL-HEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFE 544 (681)
Q Consensus 466 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 544 (681)
+++++..+.+..... +.+...+..+..++...|++ ++|++.|++.++.. +.+..+|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555565544432 34788999999999999999 99999999999874 6678999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 040136 545 EMMRKGIKPSSISCNILINGLCRT---------RKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKM--------GCIQ 607 (681)
Q Consensus 545 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~ 607 (681)
++++. .|+...+..+...+... |++++|++.+++.++.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99986 46678999999999999 99999999999999863 33678899999999998 9999
Q ss_pred HHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCccc
Q 040136 608 EALNLFDKLQAEGIYP----DAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPN-DATWYILVRNLVKEINME 677 (681)
Q Consensus 608 ~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~ 677 (681)
+|+..|+++.+. .| +...|..+..+|...|++++|.+.++++++. .|+ ...+..+...+...|+.+
T Consensus 239 ~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 239 QALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLT 309 (474)
T ss_dssp HHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999995 55 6889999999999999999999999999984 454 556777777776666543
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.37 E-value=6.1e-12 Score=123.13 Aligned_cols=245 Identities=16% Similarity=0.132 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhc-------CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccc
Q 040136 392 VFTFNILIHGLCKQRRFGSALELVNAMAVK-------GCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGD 464 (681)
Q Consensus 392 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 464 (681)
..++..+...+...|++++|..+++++.+. ..+.....+..+...|...|++++|...++++...
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------- 98 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI-------- 98 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------
Confidence 456677777888888888888888887763 22334567888888999999999999988776553
Q ss_pred cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHHcCCHH
Q 040136 465 RIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFR------GC-PLDEITYNGLIKALCNAGAVD 537 (681)
Q Consensus 465 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~ 537 (681)
+........+....++..+...|...|++++|.+.++++.+. +. +....++..+...|...|+++
T Consensus 99 --------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 170 (311)
T 3nf1_A 99 --------REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYE 170 (311)
T ss_dssp --------HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred --------HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHH
Confidence 222221212234567888999999999999999999998764 22 334567888899999999999
Q ss_pred HHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCH-------HHHHHH
Q 040136 538 KGLGLFEEMMRK------GIKP-SSISCNILINGLCRTRKANTALEFLRDMIHR-------GLTPDI-------VTYNSL 596 (681)
Q Consensus 538 ~A~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~-------~~~~~l 596 (681)
+|..+++++.+. +..| ...++..+...|...|++++|.+.++++.+. ...+.. ..+..+
T Consensus 171 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (311)
T 3nf1_A 171 EVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREEC 250 (311)
T ss_dssp HHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHh
Confidence 999999999874 1122 2457888999999999999999999998863 111211 122233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 597 INGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 597 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
...+...+.+.+|...++...... +.+..++..++.+|.+.|++++|.++++++++
T Consensus 251 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 251 KGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334445566677777777777631 33466888999999999999999999999986
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.36 E-value=1.4e-10 Score=117.24 Aligned_cols=239 Identities=9% Similarity=-0.039 Sum_probs=148.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-----CcccHH
Q 040136 261 LIHALSKSNRVSEALMLLEEMILM----GCTS-DVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFT-P-----DDITYG 329 (681)
Q Consensus 261 li~~~~~~~~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~ 329 (681)
....+...|++++|.+.+++..+. +-.+ ...++..+...+...|+++.|...+.+..+.-.. + ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455667778888888888887653 1111 2356777777788888888888888777643111 1 123455
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCh
Q 040136 330 VLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIP-DVFTFNILIHGLCKQRRF 408 (681)
Q Consensus 330 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~ 408 (681)
.+..+|...|++++|...|++.. +.....+..+ ...++..+...|...|++
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al----------------------------~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 240 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAY----------------------------SMAEAEKQPQLMGRTLYNIGLCKNSQSQY 240 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH----------------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH----------------------------HHHHHcCChHHHHHHHHHHHHHHHHCCCH
Confidence 55666666666666666555421 1111111111 123567778888888999
Q ss_pred hHHHHHHHHHHhc----CC-CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCC
Q 040136 409 GSALELVNAMAVK----GC-EPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTA 483 (681)
Q Consensus 409 ~~A~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 483 (681)
++|...+++..+. +. +....++..+...|.+.|++++|...+++..+. .... +-+.
T Consensus 241 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------------~~~~---~~~~ 301 (383)
T 3ulq_A 241 EDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY----------------SQKA---GDVI 301 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------HHHH---TCHH
T ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------HHHc---CCHH
Confidence 9998888887762 22 334567888889999999999999988876553 1111 0011
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040136 484 NTVTYNTLIHAFLRRGS---LHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMR 548 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 548 (681)
....+..+...|...|+ .++|+.++++.. ..+.....+..+...|...|++++|...|+++.+
T Consensus 302 ~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 302 YLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12234556677777777 666666666541 1122344566677778888888888888877765
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=1.6e-11 Score=120.11 Aligned_cols=244 Identities=15% Similarity=0.101 Sum_probs=159.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc------CC-
Q 040136 358 LLNTVINGYVISGRFDEAKAIFYDSMLSV-------GCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVK------GC- 423 (681)
Q Consensus 358 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~------~~- 423 (681)
++..+...|...|++++|+. +++..... ..+.....+..+...+...|++++|...+++.... +-
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~-~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVP-LCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44455555555555555555 44443331 22224456777888888999999999999887764 21
Q ss_pred CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 040136 424 EPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHE 503 (681)
Q Consensus 424 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 503 (681)
+.....+..+...|...|++++|...++++.+. .........+.....+..+...+...|++++
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~----------------~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 171 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI----------------REKVLGKDHPDVAKQLNNLALLCQNQGKYEE 171 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----------------HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH----------------HHHhcCCCChHHHHHHHHHHHHHHHcCCHHH
Confidence 224567888899999999999999999877653 2222111112245678889999999999999
Q ss_pred HHHHHHHHHhC------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCC-------HHHHHHHH
Q 040136 504 AHKLVNDMLFR------G-CPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK-------GIKPS-------SISCNILI 562 (681)
Q Consensus 504 A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~-------~~~~~~l~ 562 (681)
|.+.++++.+. + .+....++..+...|...|++++|...++++.+. ...+. ...+..+.
T Consensus 172 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (311)
T 3nf1_A 172 VEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECK 251 (311)
T ss_dssp HHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhc
Confidence 99999998764 2 2334567888999999999999999999999863 11111 12223333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 563 NGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
..+...+.+.+|...++..... .+.+..++..+..+|.+.|++++|.++++++.+.
T Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 252 GKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3444556666677777776653 2334577889999999999999999999998873
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.30 E-value=2.9e-10 Score=101.42 Aligned_cols=166 Identities=17% Similarity=0.117 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 485 TVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILING 564 (681)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 564 (681)
...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4567778888999999999999999988763 5678889999999999999999999999999874 3367888999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 040136 565 LCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDA 644 (681)
Q Consensus 565 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 644 (681)
+...|++++|.+.++++.+. .+.+...+..+..++...|++++|...++++.+.. +.+...+..++..+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999886 34567888899999999999999999999999863 44678899999999999999999
Q ss_pred HHHHHHHHHC
Q 040136 645 FLILHKGVAN 654 (681)
Q Consensus 645 ~~~~~~~~~~ 654 (681)
...++++.+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999999873
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.30 E-value=3e-09 Score=107.02 Aligned_cols=296 Identities=13% Similarity=0.052 Sum_probs=201.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-cC----HhhHH
Q 040136 361 TVINGYVISGRFDEAKAIFYDSMLSVGCIPDVF----TFNILIHGLCKQRRFGSALELVNAMAVKGCE-PN----IVTYT 431 (681)
Q Consensus 361 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~ 431 (681)
.....+...|++++|.. .++.........+.. .+..+...+...|++++|...+++....... .+ ..++.
T Consensus 19 ~~a~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAER-LAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHTTCHHHHHH-HHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHH-HHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34455667788888888 555555433222222 4556667788899999999999887653111 11 23356
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 040136 432 ILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVT--A-NTVTYNTLIHAFLRRGSLHEAHKLV 508 (681)
Q Consensus 432 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~ 508 (681)
.+...+...|++++|...+++.... .. ..+.. | ....+..+...+...|++++|...+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~----------------~~---~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 158 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQL----------------IN---EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 158 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----------------HH---HTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH----------------HH---HhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6778889999999999998877653 11 11111 2 2356677888899999999999999
Q ss_pred HHHHhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHH
Q 040136 509 NDMLFRGCP----LDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPS--SISCN----ILINGLCRTRKANTALEFL 578 (681)
Q Consensus 509 ~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~----~l~~~~~~~g~~~~A~~~~ 578 (681)
++....... ....++..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+
T Consensus 159 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 238 (373)
T 1hz4_A 159 RSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWL 238 (373)
T ss_dssp HHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 998764221 1245677888899999999999999999876421111 12111 2334577999999999999
Q ss_pred HHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHH
Q 040136 579 RDMIHRGLTP---DIVTYNSLINGLCKMGCIQEALNLFDKLQAE----GIYPDA-VTYNTLISWHFKEGLFDDAFLILHK 650 (681)
Q Consensus 579 ~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 650 (681)
++.......+ ....+..+...+...|++++|...++++... |..++. ..+..+..++...|+.++|...+++
T Consensus 239 ~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 318 (373)
T 1hz4_A 239 RHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 318 (373)
T ss_dssp HHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9887643211 1335667888899999999999999988764 212222 3666778889999999999999998
Q ss_pred HHHC----CCC----CCHHHHHHHHHHHHhcCcc
Q 040136 651 GVAN----GFV----PNDATWYILVRNLVKEINM 676 (681)
Q Consensus 651 ~~~~----g~~----~~~~~~~~ll~~~~~~g~~ 676 (681)
.++. |.. ........++..+......
T Consensus 319 al~~~~~~g~~~~~~~~g~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 319 ALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCS
T ss_pred HHHHhccccHHHHHHHccHHHHHHHHHHHhCCCC
Confidence 8763 221 1223455667777766665
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.30 E-value=2.5e-10 Score=115.05 Aligned_cols=235 Identities=11% Similarity=0.007 Sum_probs=174.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCC-Cc----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHH
Q 040136 398 LIHGLCKQRRFGSALELVNAMAVKGC-EP----NIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGL 472 (681)
Q Consensus 398 ll~~~~~~~~~~~A~~~~~~~~~~~~-~~----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~ 472 (681)
....+...|++++|...+++..+... .+ ...++..+...|...|+++.|...+.+..+.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~---------------- 170 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDI---------------- 170 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH----------------
Confidence 34456788999999999998875411 11 2456788888999999999999988876653
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040136 473 YQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFR----GCP-LDEITYNGLIKALCNAGAVDKGLGLFEEMM 547 (681)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 547 (681)
+.+.... ......+++.+..+|...|++++|.+.+++..+. +.+ ....++..+..+|...|++++|...++++.
T Consensus 171 ~~~~~~~-~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al 249 (378)
T 3q15_A 171 YQNHPLY-SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAA 249 (378)
T ss_dssp HHTSTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCCCc-hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1110000 0013457888999999999999999999988763 111 124577888999999999999999999998
Q ss_pred H-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHH
Q 040136 548 R-----KGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRG----LTPDIVTYNSLINGLCKMGC---IQEALNLFDK 615 (681)
Q Consensus 548 ~-----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~ 615 (681)
+ .... ...++..+...+.+.|++++|.+.+++..+.. .+.....+..+...+...|+ +++|+..+++
T Consensus 250 ~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 250 KVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 7 4322 36788899999999999999999999988741 11123456666667778888 7777777776
Q ss_pred HHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 616 LQAEGIYPD-AVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 616 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
. +..|+ ...+..+...|...|++++|...++++++
T Consensus 329 ~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 329 K---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp T---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 23333 34667889999999999999999999876
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.30 E-value=3e-10 Score=105.38 Aligned_cols=182 Identities=12% Similarity=0.044 Sum_probs=148.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 483 ANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILI 562 (681)
Q Consensus 483 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 562 (681)
.++..+......+...|++++|+..|++.++...+++...+..+..++...|++++|+..|+++++.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3667888888999999999999999999988753377778878899999999999999999999986433 567888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 040136 563 NGLCRTRKANTALEFLRDMIHRGLTPDI-------VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD---AVTYNTLI 632 (681)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~ 632 (681)
.+|...|++++|++.+++.++.. +.+. ..|..+...+...|++++|+..++++++. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999998852 2234 45777888888999999999999999884 565 46778888
Q ss_pred HHHHhcCCh---------------------------hHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 633 SWHFKEGLF---------------------------DDAFLILHKGVANGFVPNDATWYILVRNL 670 (681)
Q Consensus 633 ~~~~~~g~~---------------------------~~A~~~~~~~~~~g~~~~~~~~~~ll~~~ 670 (681)
.+|...|+. ++|+..++++++ +.|+......++..+
T Consensus 161 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 161 VLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHHHH
Confidence 888888877 899999999998 567765555554443
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.29 E-value=1.8e-10 Score=124.26 Aligned_cols=165 Identities=19% Similarity=0.115 Sum_probs=149.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILIN 563 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 563 (681)
+...|+.+..+|.+.|++++|++.|++.++.. |-+..++..+..+|.+.|++++|+..|+++++.... +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 56789999999999999999999999999874 667899999999999999999999999999997433 6789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChh
Q 040136 564 GLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGLFD 642 (681)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 642 (681)
+|...|++++|++.|++.++.. +-+...|..+..+|...|++++|++.|+++++. .|+ ...+..++.+|...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999999852 235788999999999999999999999999995 554 778999999999999999
Q ss_pred HHHHHHHHHHH
Q 040136 643 DAFLILHKGVA 653 (681)
Q Consensus 643 ~A~~~~~~~~~ 653 (681)
+|.+.++++++
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998876
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.26 E-value=3.4e-09 Score=106.59 Aligned_cols=199 Identities=10% Similarity=-0.057 Sum_probs=100.8
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCH----HhHHHH
Q 040136 120 LIDKLGANKEFKVIDSVLLQMKEEGIICRES----LFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTF----RSYNVV 191 (681)
Q Consensus 120 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l 191 (681)
....+...|++++|...+++........+.. ++..+...+...|++++|...+++......-..+. .++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3444556677777777777766654322221 34455566666777777777776655211101111 223444
Q ss_pred HHHHHhcCCcCcHHHHHHHHHHC----CCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC----CChhhHHH
Q 040136 192 LDVLVAGNCHKVAPNLFYDMLSK----GIS--P-TVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCV----PNSVVYQT 260 (681)
Q Consensus 192 l~~~~~~~~~~~A~~~~~~m~~~----~~~--p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~ 260 (681)
...+...|++++|...+++.++. +.. | ....+..+...+...|++++|...+++....... ....++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 55566666666666666665542 111 1 1234444555666666666666666665543210 11234555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 261 LIHALSKSNRVSEALMLLEEMILMGCTSD-VQTFN-----DVIHGLCKVNRIHEAAKLVDRMLV 318 (681)
Q Consensus 261 li~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~-----~li~~~~~~~~~~~a~~~~~~~~~ 318 (681)
+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++...
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 243 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 243 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 55666666666666666666553211111 01111 122234456666666666655543
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.24 E-value=7.3e-09 Score=104.31 Aligned_cols=235 Identities=13% Similarity=0.022 Sum_probs=168.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-----CCc-CHhh
Q 040136 361 TVINGYVISGRFDEAKAIFYDSMLSVG-CIPD----VFTFNILIHGLCKQRRFGSALELVNAMAVKG-----CEP-NIVT 429 (681)
Q Consensus 361 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~p~----~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-----~~~-~~~~ 429 (681)
.....+...|++++|+. .++...... ..++ ..++..+...+...|+++.|...+++..+.. ..+ ...+
T Consensus 106 ~~g~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIG-YYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHTTCHHHHHH-HHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHH-HHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 34445667778888877 555554321 1122 3466777888889999999998888876531 111 2456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040136 430 YTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGV-TANTVTYNTLIHAFLRRGSLHEAHKLV 508 (681)
Q Consensus 430 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~ 508 (681)
++.+..+|...|++++|...|.+.++. .... +. .....++..+..+|...|++++|.+.+
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~----------------~~~~---~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALEL----------------AMDI---QNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----------------HHHT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH----------------HHHc---CCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 788888999999999999998877653 1111 10 112356788899999999999999999
Q ss_pred HHHHhC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHH
Q 040136 509 NDMLFR----GCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKG----IKPSSISCNILINGLCRTRK---ANTALEF 577 (681)
Q Consensus 509 ~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~---~~~A~~~ 577 (681)
++..+. +.+....++..+...|.+.|++++|...+++..+.. -......+..+...+...++ +.+|+..
T Consensus 246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 998871 234457788889999999999999999999998742 11123456667777777888 7788887
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 578 LRDMIHRGLTPD-IVTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 578 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
+++. +..|+ ...+..+...|...|++++|...|+++.+
T Consensus 326 ~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 326 FEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7763 22233 35667888999999999999999999876
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.22 E-value=1.5e-10 Score=111.30 Aligned_cols=200 Identities=18% Similarity=0.109 Sum_probs=152.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 040136 438 CKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFR--- 514 (681)
Q Consensus 438 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--- 514 (681)
...|++++|...+++. +.++.+......+....++..+...|...|++++|...++++.+.
T Consensus 12 ~~~~~~~~A~~~~~~a----------------l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 75 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQA----------------LEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREK 75 (283)
T ss_dssp -CCSCSSSHHHHHHHH----------------HHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH----------------HHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 3456677777666544 444555544333345678889999999999999999999998764
Q ss_pred ---C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 515 ---G-CPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK-----GI--KPSSISCNILINGLCRTRKANTALEFLRDMIH 583 (681)
Q Consensus 515 ---~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 583 (681)
+ .+....++..+...|...|++++|...++++++. +. .....++..+...|...|++++|.+.+++..+
T Consensus 76 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 155 (283)
T 3edt_B 76 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE 155 (283)
T ss_dssp HTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 2335668888999999999999999999998864 11 22357788899999999999999999999887
Q ss_pred C------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------------------------------------
Q 040136 584 R------GLTP-DIVTYNSLINGLCKMGCIQEALNLFDKLQAEG------------------------------------ 620 (681)
Q Consensus 584 ~------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------------------------ 620 (681)
. +..| ...++..+..++...|++++|..+++++.+..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (283)
T 3edt_B 156 IYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYG 235 (283)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-----
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 4 1133 34678889999999999999999999988630
Q ss_pred -----------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 621 -----------IYPD-AVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 621 -----------~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
..|+ ..++..+..+|...|++++|..+++++++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 236 EYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122 34677788888889999999999888875
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.22 E-value=6.2e-10 Score=120.10 Aligned_cols=165 Identities=15% Similarity=0.085 Sum_probs=116.3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040136 426 NIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAH 505 (681)
Q Consensus 426 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 505 (681)
+...|+.+...|.+.|++++|...|++.++.. +-+...|..+..+|.+.|++++|+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~------------------------P~~~~a~~nLg~~l~~~g~~~eA~ 63 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF------------------------PEFAAAHSNLASVLQQQGKLQEAL 63 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 35567777777777777777777777666643 125666777777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040136 506 KLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRG 585 (681)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 585 (681)
+.|++.++.. |.+..+|..+..+|...|++++|+..|+++++.... +...|+.+..+|...|++++|++.|++.++.
T Consensus 64 ~~~~~Al~l~-P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l- 140 (723)
T 4gyw_A 64 MHYKEAIRIS-PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKL- 140 (723)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 7777777663 456677777777777777777777777777775322 5667777777777777777777777777764
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 586 LTP-DIVTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 586 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
.| +...+..+..++...|++++|.+.++++.+
T Consensus 141 -~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 141 -KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp -CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred -CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 33 456677777777777777777777777665
No 84
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.21 E-value=1.5e-09 Score=96.74 Aligned_cols=165 Identities=15% Similarity=0.094 Sum_probs=137.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040136 428 VTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKL 507 (681)
Q Consensus 428 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 507 (681)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~ 64 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD------------------------AFDVDVALHLGIAYVKTGAVDRGTEL 64 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT------------------------SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------------------------ccChHHHHHHHHHHHHcCCHHHHHHH
Confidence 456667777888888888888887765542 23677888888899999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040136 508 VNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLT 587 (681)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 587 (681)
++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|.+.++++.+.. +
T Consensus 65 ~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~ 141 (186)
T 3as5_A 65 LERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-P 141 (186)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-c
Confidence 99988773 5678888889999999999999999999998864 3467888889999999999999999999988863 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 588 PDIVTYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 588 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
.+...+..+..++...|++++|...++++.+.
T Consensus 142 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 142 NEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 46788888999999999999999999998874
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.15 E-value=3.5e-09 Score=98.13 Aligned_cols=196 Identities=5% Similarity=-0.137 Sum_probs=149.4
Q ss_pred CCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHH
Q 040136 112 HTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVV 191 (681)
Q Consensus 112 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 191 (681)
.++..+......+...|++++|...|+++.+..++++...+..+..++...|++++|+..|++.. ... +.+...|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~-p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAI-KKN-YNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTT-CSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHH-HhC-cchHHHHHHH
Confidence 45678888888999999999999999999988764577788889999999999999999999988 332 4456788888
Q ss_pred HHHHHhcCCcCcHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--ChhhHHHHH
Q 040136 192 LDVLVAGNCHKVAPNLFYDMLSKGISPTV-------YTFGVVMKALCMVNEVDSACSLLRDMTKHGCVP--NSVVYQTLI 262 (681)
Q Consensus 192 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li 262 (681)
..++...|++++|+..|++.++.... +. ..|..+...+...|++++|.+.|++..+.+ +. +..++..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHH
Confidence 89999999999999999999886422 34 457777788889999999999999998875 33 457777788
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 263 HALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVR 319 (681)
Q Consensus 263 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 319 (681)
.+|...|+ ..++++...+ ..+...|.... ....+.+++|+..+++..+.
T Consensus 161 ~~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYNNGA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 88765543 3445554443 23444444433 23456689999999998876
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.13 E-value=1.1e-09 Score=105.16 Aligned_cols=199 Identities=20% Similarity=0.142 Sum_probs=145.3
Q ss_pred hcCChhHHHHHHHHHHhc-------CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHH
Q 040136 404 KQRRFGSALELVNAMAVK-------GCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDM 476 (681)
Q Consensus 404 ~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 476 (681)
..|++++|...+++..+. ..+....++..+...|...|++++|...++++.+. ..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------------~~~~ 76 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAI----------------REKT 76 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------HHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH----------------HHHH
Confidence 456666666666655442 22234567888888999999999999988877653 2222
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 040136 477 LLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFR------G-CPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK 549 (681)
Q Consensus 477 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (681)
.....+....++..+..+|...|++++|.+.++++... . .+....++..+...|...|++++|...++++.+.
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 77 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp TCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11111224567888889999999999999999888764 1 1335667888888999999999999999988774
Q ss_pred ------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------------------------------------
Q 040136 550 ------GIKP-SSISCNILINGLCRTRKANTALEFLRDMIHR-------------------------------------- 584 (681)
Q Consensus 550 ------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------------------------- 584 (681)
+-.| ...++..+...|...|++++|.+++++..+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (283)
T 3edt_B 157 YATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGE 236 (283)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 1122 3467788899999999999999999888753
Q ss_pred ----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 585 ----------GLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 585 ----------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
..+....++..+..+|...|++++|..+++++.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 237 YGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1112245678889999999999999999999876
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.08 E-value=4.2e-09 Score=101.63 Aligned_cols=217 Identities=12% Similarity=-0.028 Sum_probs=156.0
Q ss_pred ChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCC-CH
Q 040136 407 RFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTA-NT 485 (681)
Q Consensus 407 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~ 485 (681)
++++|...+++. ...|...|++++|...|.+.... +.+ .+.++ ..
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~----------------~~~---~~~~~~~a 77 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADY----------------QKK---AGNEDEAG 77 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHH----------------HHH---TTCHHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHH----------------HHH---hCCHHHHH
Confidence 477777777665 34577889999999888776553 111 11111 24
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCC-C----
Q 040136 486 VTYNTLIHAFLRRGSLHEAHKLVNDMLFR----GCPL-DEITYNGLIKALCNA-GAVDKGLGLFEEMMRKGIKP-S---- 554 (681)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p-~---- 554 (681)
.+|+.+..+|...|++++|+..+++.++. |-+. -..++..+...|... |++++|+..|+++++..... +
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 67889999999999999999999988764 2111 145788899999996 99999999999998742111 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDI------VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAV-- 626 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-- 626 (681)
..++..++..+...|++++|+..+++..+....... ..|..+..++...|++++|+..+++..+ +.|+..
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~ 235 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C-------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCc
Confidence 356888999999999999999999999985322211 1567788889999999999999999987 345422
Q ss_pred ----HHHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCCHH
Q 040136 627 ----TYNTLISWHF--KEGLFDDAFLILHKGVANGFVPNDA 661 (681)
Q Consensus 627 ----~~~~l~~~~~--~~g~~~~A~~~~~~~~~~g~~~~~~ 661 (681)
.+..++.++. ..+++++|+..|+++.. +.|...
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~--l~~~~~ 274 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR--LDKWKI 274 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC--CCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc--cHHHHH
Confidence 3444556664 45678899998888764 445443
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.07 E-value=6.7e-09 Score=98.47 Aligned_cols=171 Identities=11% Similarity=0.064 Sum_probs=139.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C-CHHH
Q 040136 483 ANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLD---EITYNGLIKALCNAGAVDKGLGLFEEMMRKGIK-P-SSIS 557 (681)
Q Consensus 483 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~ 557 (681)
.+...+..+...+.+.|++++|+..|+++++.. |.+ ...+..+..+|.+.|++++|+..|+++++.... | ....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 366778888889999999999999999999873 444 678889999999999999999999999986331 2 2466
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCC-HHHH-----------------HHHHHHHHhcCCHHHHHH
Q 040136 558 CNILINGLCR--------TRKANTALEFLRDMIHRGLTPD-IVTY-----------------NSLINGLCKMGCIQEALN 611 (681)
Q Consensus 558 ~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~p~-~~~~-----------------~~l~~~~~~~g~~~~A~~ 611 (681)
+..+..++.. .|++++|+..|+++++. .|+ .... ..+..+|.+.|++++|+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 7788888888 99999999999999985 233 2233 456888999999999999
Q ss_pred HHHHHHHCCCCCC----HHHHHHHHHHHHhc----------CChhHHHHHHHHHHHCCCCCCH
Q 040136 612 LFDKLQAEGIYPD----AVTYNTLISWHFKE----------GLFDDAFLILHKGVANGFVPND 660 (681)
Q Consensus 612 ~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~g~~~~~ 660 (681)
.|+++++. .|+ ...+..++.+|... |++++|...++++++. .|+.
T Consensus 170 ~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~ 228 (261)
T 3qky_A 170 TYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDS 228 (261)
T ss_dssp HHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCC
Confidence 99999985 444 45777888888866 8999999999999984 4554
No 89
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.06 E-value=1e-08 Score=93.22 Aligned_cols=176 Identities=12% Similarity=0.003 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHC
Q 040136 486 VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNG----------------LIKALCNAGAVDKGLGLFEEMMRK 549 (681)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~~~ 549 (681)
..+......+...|++++|+..|++.++.. |.+...+.. +..+|.+.|++++|+..|+++++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344445566788999999999999998873 445667777 899999999999999999999997
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHH
Q 040136 550 GIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGC--IQEALNLFDKLQAEGIYPDAVT 627 (681)
Q Consensus 550 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~ 627 (681)
... +...+..+..++...|++++|++.|++.++.. +.+...|..+..+|...|+ .+.+...++.... ..|....
T Consensus 84 ~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a 159 (208)
T 3urz_A 84 APN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYA 159 (208)
T ss_dssp CTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHH
Confidence 533 78889999999999999999999999999852 3357888888888876654 4556666666643 2333444
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 628 YNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVR 668 (681)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 668 (681)
+..+..++...|++++|...|+++++ +.|+......+.+
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 55567777888999999999999997 6788776655544
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.03 E-value=1.6e-08 Score=84.32 Aligned_cols=128 Identities=18% Similarity=0.245 Sum_probs=76.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 523 YNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCK 602 (681)
Q Consensus 523 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 602 (681)
+..+...+...|++++|..+++++.+.+. .+...+..++..+...|++++|.++++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 44555555666666666666666655432 244555556666666666666666666665542 2244555666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 603 MGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 603 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
.|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666666666666666542 23455666666666666777777776666665
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.02 E-value=1.9e-07 Score=87.99 Aligned_cols=172 Identities=14% Similarity=0.051 Sum_probs=130.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----CHH
Q 040136 483 ANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGC-PLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKP-----SSI 556 (681)
Q Consensus 483 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~ 556 (681)
++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.+. .| +..
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~ 175 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNE 175 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchH
Confidence 4566667888999999999999999999877753 247778888999999999999999999999885 45 245
Q ss_pred HHHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC---CC-
Q 040136 557 SCNILING--LCRTR--KANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE-----GI---YP- 623 (681)
Q Consensus 557 ~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~---~p- 623 (681)
+...++.+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+. +. .|
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~ 253 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLY 253 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSS
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCC
Confidence 55566655 33345 899999999999875 455334445555889999999999999977653 00 24
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 040136 624 DAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDAT 662 (681)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 662 (681)
|..++..+|......|+ +|.++++++.+ ..|+...
T Consensus 254 ~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp~ 288 (310)
T 3mv2_B 254 KPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHAF 288 (310)
T ss_dssp HHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCHH
T ss_pred CHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCChH
Confidence 45566567777777786 89999999998 4566543
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.00 E-value=2.8e-08 Score=82.89 Aligned_cols=130 Identities=18% Similarity=0.248 Sum_probs=114.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 487 TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLC 566 (681)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 566 (681)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.+. .+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 56778888999999999999999998874 55788889999999999999999999999998743 36778889999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 567 RTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 567 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
..|++++|.+.++++.+.. +.+...+..+..++...|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999998853 346778889999999999999999999999874
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.99 E-value=2.3e-08 Score=90.85 Aligned_cols=140 Identities=13% Similarity=0.054 Sum_probs=107.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 488 YNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCR 567 (681)
Q Consensus 488 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 567 (681)
...+..+|.+.|++++|+..+++.++.. |.+...+..+..+|...|++++|+..|+++++..+. +...+..+...|..
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 3448889999999999999999999884 668899999999999999999999999999997533 67888888888876
Q ss_pred cCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 568 TRK--ANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLIS 633 (681)
Q Consensus 568 ~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 633 (681)
.|. .+.+...++.... ..|....+.....++...|++++|+..|+++++ +.|+......+.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 654 4455666666543 233333444556677788999999999999998 5888765554443
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.99 E-value=2.5e-08 Score=96.14 Aligned_cols=199 Identities=12% Similarity=-0.016 Sum_probs=144.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhc----CCCcC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHH
Q 040136 399 IHGLCKQRRFGSALELVNAMAVK----GCEPN-IVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLY 473 (681)
Q Consensus 399 l~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~ 473 (681)
...|...|++++|...+++..+. |-+++ ..+|+.+..+|.+.|++++|...+++.++. +
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l----------------~ 107 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI----------------F 107 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------H
Confidence 45677889999999988887653 22222 467888999999999999999998877653 1
Q ss_pred HHHHhcCCC-CCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040136 474 QDMLLEGVT-ANTVTYNTLIHAFLRR-GSLHEAHKLVNDMLFRGCPL-D----EITYNGLIKALCNAGAVDKGLGLFEEM 546 (681)
Q Consensus 474 ~~~~~~~~~-~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 546 (681)
.+. |-. .-..++..+..+|... |++++|+..|++.++..... + ..++..+...|.+.|++++|+..|+++
T Consensus 108 ~~~---g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 184 (292)
T 1qqe_A 108 THR---GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKL 184 (292)
T ss_dssp HHT---TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHc---CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 111 100 0135788889999996 99999999999987652110 1 356888999999999999999999999
Q ss_pred HHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH--hcCCHHHHHHH
Q 040136 547 MRKGIKPSS------ISCNILINGLCRTRKANTALEFLRDMIHRGLTPDI------VTYNSLINGLC--KMGCIQEALNL 612 (681)
Q Consensus 547 ~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~g~~~~A~~~ 612 (681)
.+....... ..+..++.++...|++++|...+++.++. .|+. ..+..++.++. ..+++++|+..
T Consensus 185 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~ 262 (292)
T 1qqe_A 185 IKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKE 262 (292)
T ss_dssp HHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHH
T ss_pred HHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 986433222 25777888999999999999999998863 3432 23445566664 45678899998
Q ss_pred HHHHHH
Q 040136 613 FDKLQA 618 (681)
Q Consensus 613 ~~~~~~ 618 (681)
|+++..
T Consensus 263 ~~~~~~ 268 (292)
T 1qqe_A 263 FDNFMR 268 (292)
T ss_dssp HTTSSC
T ss_pred hccCCc
Confidence 877755
No 95
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.98 E-value=4.5e-08 Score=89.16 Aligned_cols=176 Identities=14% Similarity=0.051 Sum_probs=144.9
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 040136 469 ALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAG----AVDKGLGLFE 544 (681)
Q Consensus 469 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~ 544 (681)
|...|++..+.| ++..+..+...|...+++++|++.|++..+.| ++..+..|...|.. + ++++|..+|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444455554443 78889999999999999999999999999876 66778888888887 7 8999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 040136 545 EMMRKGIKPSSISCNILINGLCR----TRKANTALEFLRDMIHRGLT-PDIVTYNSLINGLCK----MGCIQEALNLFDK 615 (681)
Q Consensus 545 ~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 615 (681)
+..+.| +...+..|...|.. .+++++|+++|++..+.|.. .+...+..|...|.. .+++++|+..|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 998875 67888888888887 88999999999999986421 126778888888988 8899999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHHHCCC
Q 040136 616 LQAEGIYPDAVTYNTLISWHFKE-G-----LFDDAFLILHKGVANGF 656 (681)
Q Consensus 616 ~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~g~ 656 (681)
..+. ..+...+..|...|... | ++++|..++++..+.|.
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9985 33556777888888654 3 89999999999999873
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.97 E-value=5.6e-08 Score=91.61 Aligned_cols=141 Identities=12% Similarity=0.098 Sum_probs=72.3
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 204 APNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGC-VPNSVVYQTLIHALSKSNRVSEALMLLEEMI 282 (681)
Q Consensus 204 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 282 (681)
|+..|++....+ .++..++..+..++...|++++|++++.+....+- .-+...+..++.++.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 33444444555666666666666666666655441 1244555566666666666666666666665
Q ss_pred HCCCCC-----CHHHHHHHHHHHHh--cC--CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHh
Q 040136 283 LMGCTS-----DVQTFNDVIHGLCK--VN--RIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLN 349 (681)
Q Consensus 283 ~~~~~~-----~~~~~~~li~~~~~--~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 349 (681)
+. .| +..+...++.++.. .| ++..|..+|+++.+. .|+..+...++.++.+.|++++|.+.++
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 53 33 23344444444222 23 566666666665443 2221222233334555555555555544
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.97 E-value=2.5e-08 Score=94.49 Aligned_cols=209 Identities=11% Similarity=0.032 Sum_probs=116.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHH
Q 040136 391 DVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPN---IVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIE 467 (681)
Q Consensus 391 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 467 (681)
+...+......+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|...|+.+++..+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~-------- 84 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI-------- 84 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC--------
Confidence 44455555666666667777777776666552 222 345556666666666666666666666554211
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 040136 468 EALGLYQDMLLEGVTANTVTYNTLIHAFLR--------RGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKG 539 (681)
Q Consensus 468 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 539 (681)
.+.....+..+..++.. .|++++|...|+++++.. |.+......+...
T Consensus 85 -------------~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~---------- 140 (261)
T 3qky_A 85 -------------DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKI---------- 140 (261)
T ss_dssp -------------CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHH----------
T ss_pred -------------CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHH----------
Confidence 00123445555555555 666666666666665542 2222222111110
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhc----------CCHH
Q 040136 540 LGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLT-P-DIVTYNSLINGLCKM----------GCIQ 607 (681)
Q Consensus 540 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~----------g~~~ 607 (681)
..+... -...+..+...|...|++++|+..|+++++.... + ....+..+..+|... |+++
T Consensus 141 ----~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~ 212 (261)
T 3qky_A 141 ----RELRAK----LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYR 212 (261)
T ss_dssp ----HHHHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHH
T ss_pred ----HHHHHH----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHH
Confidence 000000 0111356678888899999999999988874211 1 235667777777765 8889
Q ss_pred HHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChh
Q 040136 608 EALNLFDKLQAEGIYPDA----VTYNTLISWHFKEGLFD 642 (681)
Q Consensus 608 ~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~ 642 (681)
+|+..++++++. .|+. .....+...+...|+++
T Consensus 213 ~A~~~~~~~~~~--~p~~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 213 RAVELYERLLQI--FPDSPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHH--CTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHHHHhh
Confidence 999999999885 5553 23333444444444433
No 98
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.94 E-value=3.2e-06 Score=87.38 Aligned_cols=125 Identities=10% Similarity=0.084 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 521 ITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRT-RKANTALEFLRDMIHRGLTPDIVTYNSLING 599 (681)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 599 (681)
.+|...+....+.++.+.|..+|+++ +. ...+...|...+..-... ++.+.|..+|+...+. .+-+...|...++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 45556666666677788888888887 32 122334443222222222 3588888888887774 22234455666776
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 600 LCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
..+.|+.+.|..+|+.+. .....|...+..-...|+.+.+..+++++.+
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777888888888888762 2466777777777777888888887777764
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.93 E-value=1.4e-07 Score=85.94 Aligned_cols=176 Identities=16% Similarity=0.102 Sum_probs=116.0
Q ss_pred HHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHH
Q 040136 410 SALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYN 489 (681)
Q Consensus 410 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 489 (681)
+|.+.|++..+.| +...+..+...|...+++++|...|++..+.+ ++..+.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--------------------------~~~a~~ 54 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--------------------------DGDALA 54 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--------------------------CHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--------------------------CHHHHH
Confidence 3555566665553 55566666666666777777777776666543 555666
Q ss_pred HHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 040136 490 TLIHAFLRRG----SLHEAHKLVNDMLFRGCPLDEITYNGLIKALCN----AGAVDKGLGLFEEMMRKGIK-PSSISCNI 560 (681)
Q Consensus 490 ~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~ 560 (681)
.+...|.. + ++++|.+.|++..+.| +...+..|...|.. .+++++|+.+|++..+.|.. .....+..
T Consensus 55 ~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~ 130 (212)
T 3rjv_A 55 LLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQML 130 (212)
T ss_dssp HHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHH
T ss_pred HHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHH
Confidence 66666665 5 6777777777776654 55566666666665 67778888888877776421 01566777
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 040136 561 LINGLCR----TRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKM-G-----CIQEALNLFDKLQAEG 620 (681)
Q Consensus 561 l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 620 (681)
|...|.. .+++++|++.|++..+. ..+...+..|...|... | +.++|+..|++..+.|
T Consensus 131 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 131 LGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7777777 67788888888887775 22344566666666543 2 7888888888887765
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.91 E-value=1.4e-07 Score=86.89 Aligned_cols=168 Identities=13% Similarity=0.053 Sum_probs=128.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHH
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCP--LDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSS--ISCN 559 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~ 559 (681)
+...+..+...+.+.|++++|+..|+++++.... .....+..++.+|.+.|++++|+..|+++++....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4455666777889999999999999999876311 12457788899999999999999999999986433221 2444
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCH-HHH-----------------HHHHHHHHhc
Q 040136 560 ILINGLCR------------------TRKANTALEFLRDMIHRGLTPDI-VTY-----------------NSLINGLCKM 603 (681)
Q Consensus 560 ~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~p~~-~~~-----------------~~l~~~~~~~ 603 (681)
.+..++.. .|++++|+..|+++++. .|+. ..+ ..+...+.+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~ 160 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTER 160 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55555543 57899999999999985 3432 222 2456678899
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 040136 604 GCIQEALNLFDKLQAEGIYPDA----VTYNTLISWHFKEGLFDDAFLILHKGVANG 655 (681)
Q Consensus 604 g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 655 (681)
|++++|+..|+++++. .|+. ..+..+..++.+.|++++|.+.++.+...+
T Consensus 161 ~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 161 GAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp TCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 9999999999999985 4542 468889999999999999999999998854
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.90 E-value=4.7e-08 Score=93.86 Aligned_cols=165 Identities=12% Similarity=0.016 Sum_probs=137.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHH
Q 040136 483 ANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISC-NIL 561 (681)
Q Consensus 483 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l 561 (681)
.+...+..+...+...|++++|...|+++.+.. |.+...+..+...+...|++++|...++++.... |+.... ...
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 355677788888999999999999999998874 6688899999999999999999999999998763 444333 233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc
Q 040136 562 INGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD---AVTYNTLISWHFKE 638 (681)
Q Consensus 562 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~ 638 (681)
...+...++.++|.+.+++..+.. +.+...+..+...+...|++++|+..++++++. .|+ ...+..++..+...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHHc
Confidence 334667788888999999998862 446788899999999999999999999999985 444 56889999999999
Q ss_pred CChhHHHHHHHHHHH
Q 040136 639 GLFDDAFLILHKGVA 653 (681)
Q Consensus 639 g~~~~A~~~~~~~~~ 653 (681)
|+.++|...+++.+.
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999988764
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.89 E-value=2.3e-08 Score=88.15 Aligned_cols=161 Identities=10% Similarity=0.018 Sum_probs=127.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H
Q 040136 487 TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILING-L 565 (681)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~ 565 (681)
.+..+...+...|++++|...+++..+.. |.+...+..+...+...|++++|+..++++.+.. |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 35566778899999999999999988763 6678899999999999999999999999988764 344443333222 2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChh
Q 040136 566 CRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD---AVTYNTLISWHFKEGLFD 642 (681)
Q Consensus 566 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~ 642 (681)
...+...+|+..+++..+.. +-+...+..+..++...|++++|+..|+++++. .|+ ...+..++.++...|+.+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKV--NLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CcccChHHHHHHHHHHHHHhCCCC
Confidence 22233445788999988752 235788899999999999999999999999985 443 558889999999999999
Q ss_pred HHHHHHHHHHH
Q 040136 643 DAFLILHKGVA 653 (681)
Q Consensus 643 ~A~~~~~~~~~ 653 (681)
+|...|++.+.
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999998764
No 103
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.89 E-value=2e-06 Score=88.92 Aligned_cols=216 Identities=12% Similarity=0.029 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhc
Q 040136 272 SEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKI 351 (681)
Q Consensus 272 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 351 (681)
+.+..+|+++.... +.+...|...+.-+...|+.+.|.+++++.... |....... .|+...+.++. ++.
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~- 264 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGD- 264 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHH-
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHH-
Confidence 34667888877653 556777888888888888999999999988877 44332211 12211111111 111
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHH
Q 040136 352 PSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYT 431 (681)
Q Consensus 352 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 431 (681)
+...+... ..+.+. .. ........|...+....+.++.+.|..+|+.. ... ..+..+|.
T Consensus 265 ----------l~~~~~~~-~~~~~~------~~--~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i 323 (493)
T 2uy1_A 265 ----------LKRKYSMG-EAESAE------KV--FSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFI 323 (493)
T ss_dssp ----------HHHHTC-------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHH
T ss_pred ----------HHHHHHhh-ccchhh------hh--cccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHH
Confidence 11111000 000000 00 00001234555566666666777777777777 211 12233333
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040136 432 ILVDGFCK-EGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVND 510 (681)
Q Consensus 432 ~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 510 (681)
..+..-.. .++.+.|..+|+...+.. +.++..+...++...+.|+.+.|..+|+.
T Consensus 324 ~~A~lE~~~~~d~~~ar~ife~al~~~------------------------~~~~~~~~~yid~e~~~~~~~~aR~l~er 379 (493)
T 2uy1_A 324 YCAFIEYYATGSRATPYNIFSSGLLKH------------------------PDSTLLKEEFFLFLLRIGDEENARALFKR 379 (493)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHC------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHC------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22222122 235777777777766642 11334445556656667777777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040136 511 MLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMR 548 (681)
Q Consensus 511 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 548 (681)
+.+ ....|...+..=...|+.+.+..+++++.+
T Consensus 380 ~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 380 LEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp SCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 654 345666666655666777777777777664
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.89 E-value=2.4e-08 Score=108.34 Aligned_cols=181 Identities=12% Similarity=-0.042 Sum_probs=144.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 040136 438 CKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCP 517 (681)
Q Consensus 438 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 517 (681)
...|++++|...++++..... +.... ..+.+...+..+..++...|++++|++.++++.+.. +
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~---------------~~~~~-~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p 464 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGAL---------------DADGV-DFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-G 464 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-----------------------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-C
T ss_pred ccccCHHHHHHHHHHhhhhcc---------------ccccc-ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-c
Confidence 667888888888888772100 00000 013367788899999999999999999999999874 6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 518 LDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLI 597 (681)
Q Consensus 518 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 597 (681)
.+...+..+..+|...|++++|+..|+++++.... +...+..+..++...|++++ ++.|++.++.+ +.+...|..+.
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg 541 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLA 541 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHH
Confidence 68889999999999999999999999999997533 67888999999999999999 99999999853 33678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 040136 598 NGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGL 640 (681)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 640 (681)
.++.+.|++++|++.|+++.+ +.|+ ...+..+..++...|+
T Consensus 542 ~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 542 RARSAEGDRVGAVRTLDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTTCHHHHHHHHHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHHHHcCCHHHHHHHHHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 999999999999999999987 4666 5577778888766554
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.88 E-value=1.1e-08 Score=87.34 Aligned_cols=140 Identities=11% Similarity=0.012 Sum_probs=71.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 040136 529 ALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQE 608 (681)
Q Consensus 529 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 608 (681)
.+...|++++|+..++....... .+...+..+...|.+.|++++|++.|++.++.. +-+...|..+..++...|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 33444555555555555544311 122333445555666666666666666655531 2244555666666666666666
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHH-HHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 040136 609 ALNLFDKLQAEGIYP-DAVTYNTLISWHFKEGLFDDAFLI-LHKGVANGFVPN-DATWYILVRNLVKEI 674 (681)
Q Consensus 609 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~g~~~~-~~~~~~ll~~~~~~g 674 (681)
|+..|+++++. .| +..++..+...|.+.|++++|.+. ++++++ +.|+ ...+......+...|
T Consensus 84 A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence 66666666653 33 345555666666666666554443 355555 3343 333333333444444
No 106
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.88 E-value=9.2e-09 Score=87.84 Aligned_cols=145 Identities=12% Similarity=0.008 Sum_probs=115.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040136 491 LIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRK 570 (681)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 570 (681)
|...+...|++++|+..+....... +.+...+..+...|.+.|++++|+..|+++++.... +..+|..+..+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 4455667789999999999887652 335566778899999999999999999999997533 78899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 040136 571 ANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNL-FDKLQAEGIYP-DAVTYNTLISWHFKEGL 640 (681)
Q Consensus 571 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 640 (681)
+++|+..|++.++.. +-+...|..+..+|.+.|++++|.+. ++++++. .| +..+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 999999999999852 23578899999999999999876655 6888884 55 46677777777777664
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.85 E-value=1.7e-06 Score=82.55 Aligned_cols=237 Identities=11% Similarity=0.065 Sum_probs=178.5
Q ss_pred HHHhcCCh-hHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHH
Q 040136 401 GLCKQRRF-GSALELVNAMAVKGCEPNIVTYTILVDGFCKEG--QLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDML 477 (681)
Q Consensus 401 ~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 477 (681)
+..+.|.+ ++|+.+.+.++..+ +-+...|+.-..++...| ++++++..++.++..++
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP------------------- 100 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE------------------- 100 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-------------------
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-------------------
Confidence 33344444 68999999888773 334556777777777777 88888888888777542
Q ss_pred hcCCCCCHHHHHHHHHHH----Hhc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHH
Q 040136 478 LEGVTANTVTYNTLIHAF----LRR---GSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVD--KGLGLFEEMMR 548 (681)
Q Consensus 478 ~~~~~~~~~~~~~li~~~----~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~ 548 (681)
.+..+|+.-...+ ... +++++++++++.+.+.. +-+..+|+.-...+.+.|.++ +++..++++++
T Consensus 101 -----k~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~ 174 (306)
T 3dra_A 101 -----KNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID 174 (306)
T ss_dssp -----TCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred -----ccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH
Confidence 2555565544444 444 78999999999999874 778899998888888899888 99999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC-
Q 040136 549 KGIKPSSISCNILINGLCRTRK------ANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQE-ALNLFDKLQAEG- 620 (681)
Q Consensus 549 ~~~~p~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~- 620 (681)
.++. |...|+.....+...+. ++++++.+++++... +-|...|+.+...+.+.|+..+ +..+.+++.+.+
T Consensus 175 ~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~ 252 (306)
T 3dra_A 175 TDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEK 252 (306)
T ss_dssp HCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGG
T ss_pred hCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccC
Confidence 8655 78888888888877777 899999999999863 4478889988888888888444 556777666532
Q ss_pred -CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHH
Q 040136 621 -IYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPN-DATWYIL 666 (681)
Q Consensus 621 -~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~l 666 (681)
-..+...+..++++|.+.|+.++|.++++.+.+. +.|. ...|...
T Consensus 253 ~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~-~Dpir~~yW~~~ 299 (306)
T 3dra_A 253 DQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK-YNPIRSNFWDYQ 299 (306)
T ss_dssp TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-cChHHHHHHHHH
Confidence 1336778889999999999999999999999863 3454 3444443
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.85 E-value=2.1e-07 Score=89.31 Aligned_cols=165 Identities=9% Similarity=-0.009 Sum_probs=125.6
Q ss_pred CCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHH
Q 040136 112 HTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVV 191 (681)
Q Consensus 112 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 191 (681)
.+...+..+...+.+.|++++|...++++.+..+ .+..++..+...|.+.|++++|...++++... .|+.......
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~ 190 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLV 190 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHH
Confidence 4556677778888889999999999999888775 37788888889999999999999999888732 3444433333
Q ss_pred H-HHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhc
Q 040136 192 L-DVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPN--SVVYQTLIHALSKS 268 (681)
Q Consensus 192 l-~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~ 268 (681)
. ..+.+.++.++|...|++.++.. +.+...+..+...+...|++++|...|+++.+.. +.+ ...+..++..+...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHc
Confidence 2 33667778888888888888764 2356778888888888888888888888888765 222 56788888888888
Q ss_pred CChhHHHHHHHHHH
Q 040136 269 NRVSEALMLLEEMI 282 (681)
Q Consensus 269 ~~~~~A~~~~~~m~ 282 (681)
|+.++|...+++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 88888888877654
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.84 E-value=7.3e-08 Score=93.66 Aligned_cols=199 Identities=10% Similarity=0.009 Sum_probs=89.9
Q ss_pred cCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCC--
Q 040136 405 QRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVT-- 482 (681)
Q Consensus 405 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-- 482 (681)
.|++++|.+++++..+.. +.. + +...++++.|...|.++... ....++.++|...|.+.......
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a~~~---~~~~g~~~~A~~~~~~al~~~~~~~ 70 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKAAVA---FKNAKQLEQAKDAYLQEAEAHANNR 70 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 466777888777766531 111 0 11146777777666654221 00123445555555444332100
Q ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-
Q 040136 483 ---ANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFR----GCPL-DEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKP- 553 (681)
Q Consensus 483 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p- 553 (681)
.-..+|..+..+|...|++++|+..+++.++. |-+. -..++..+...|.. |++++|+..|+++++.....
T Consensus 71 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~ 149 (307)
T 2ifu_A 71 SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE 149 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC
Confidence 01234445555555555555555555554332 1000 12344444455544 55555555555554421000
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 554 S----SISCNILINGLCRTRKANTALEFLRDMIHR----GLTPD-IVTYNSLINGLCKMGCIQEALNLFDKLQ 617 (681)
Q Consensus 554 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 617 (681)
+ ..++..+...|...|++++|++.+++.++. +..+. ...+..++.++...|++++|+..|++..
T Consensus 150 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 150 RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 0 234445555555555555555555555431 11111 1133334444444555555555555554
No 110
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.83 E-value=3.8e-08 Score=106.82 Aligned_cols=168 Identities=9% Similarity=-0.079 Sum_probs=78.4
Q ss_pred CCChHHHHHHHHHhh--------hCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 040136 91 PLDVDTSMEIFTWAG--------SQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRG 162 (681)
Q Consensus 91 ~~~~~~al~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 162 (681)
.+++++|++.|+.+. ... +.+...+..+..++...|++++|...++++.+.++ .+..++..+..+|...
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT 480 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence 455555555555544 211 13334444445555555555555555555554442 2444555555555555
Q ss_pred CChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 040136 163 GVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSL 242 (681)
Q Consensus 163 g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 242 (681)
|++++|+..|++.. ... +.+...|..+..++.+.|++++ ++.|++.++.+.. +...+..+..++.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al-~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVL-DTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHH-HHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHH-HhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555544 111 2234444445555555555555 5555555444211 334444555555555555555555
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHH
Q 040136 243 LRDMTKHGCVPNSVVYQTLIHALS 266 (681)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~li~~~~ 266 (681)
|+++.+.+ +.+..++..+..++.
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~ 579 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLL 579 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC
T ss_pred HHhhcccC-cccHHHHHHHHHHHH
Confidence 55544433 222334444444443
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.83 E-value=9.6e-08 Score=101.86 Aligned_cols=152 Identities=12% Similarity=-0.035 Sum_probs=98.3
Q ss_pred ccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 040136 464 DRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLF 543 (681)
Q Consensus 464 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 543 (681)
++.++|...+++..+... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|...+
T Consensus 3 g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 566777777777766533 256777777777778888888888888777763 556777777777777888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 040136 544 EEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKM---GCIQEALNLFDKLQAE 619 (681)
Q Consensus 544 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 619 (681)
+++++... .+...+..+..+|...|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.++++.+.
T Consensus 81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 87777642 256677777777888888888888888777642 23456677777777777 7788888888877775
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.79 E-value=5.5e-07 Score=82.85 Aligned_cols=185 Identities=9% Similarity=0.017 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCH-HhHHH
Q 040136 114 FDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIIC--RESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTF-RSYNV 190 (681)
Q Consensus 114 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~ 190 (681)
...+..++..+...|++++|...|+++++..+.. ...++..+..+|.+.|++++|+..|+++.+...-.+.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 4445555666667777777777777776654321 13456666777777777777777777766332212221 13333
Q ss_pred HHHHHH------------------hcCCcCcHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 040136 191 VLDVLV------------------AGNCHKVAPNLFYDMLSKGISPTV-YTFGVVMKALCMVNEVDSACSLLRDMTKHGC 251 (681)
Q Consensus 191 ll~~~~------------------~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 251 (681)
+..++. ..|++++|+..|+++++.. |+. .......... .+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH----------HHHHHH-----
Confidence 333333 2455666666666666542 222 2221111000 000000
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040136 252 VPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSD----VQTFNDVIHGLCKVNRIHEAAKLVDRMLVRG 320 (681)
Q Consensus 252 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 320 (681)
......+...|.+.|++++|...|+++.+.. |+ ...+..+..++.+.|++++|.+.++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0111345677888899999999999888753 33 2467778888889999999999998887763
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.78 E-value=2.5e-06 Score=81.38 Aligned_cols=225 Identities=7% Similarity=0.021 Sum_probs=168.4
Q ss_pred HhcCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCC--CchHHHHHHHHHHHcCCCCCHHHHHHHHHHH----H
Q 040136 87 LLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANK--EFKVIDSVLLQMKEEGIICRESLFILIMKYY----G 160 (681)
Q Consensus 87 ~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~ 160 (681)
++......++|++.++.+....| -...++.....++...| +++++...++.+...++. +..+|+.-...+ .
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP--~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELA--SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCc--HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHH
Confidence 34455556789999999887664 45566777777788888 999999999999988764 555665443333 4
Q ss_pred hC---CChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcC--cHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 040136 161 RG---GVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHK--VAPNLFYDMLSKGISPTVYTFGVVMKALCMVNE 235 (681)
Q Consensus 161 ~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 235 (681)
.. +++++++.+++++.. .. +.+..+|+...-++.+.|.++ ++++.++++++.++. |...|+.-...+.+.+.
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~-~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLS-SD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGG
T ss_pred hccccCCHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccc
Confidence 44 788999999999983 32 667888888888888888888 999999999987644 77777777666666666
Q ss_pred ------hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCH
Q 040136 236 ------VDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSE-ALMLLEEMILMG--CTSDVQTFNDVIHGLCKVNRI 306 (681)
Q Consensus 236 ------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~ 306 (681)
++++++.++.+.... +-|..+|+.+-..+.+.|+... +..+.+++.+.+ -+.+...+..++..+.+.|+.
T Consensus 196 ~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~ 274 (306)
T 3dra_A 196 LATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY 274 (306)
T ss_dssp GCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred cchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence 788888888888776 6778888888888888887444 445555554322 134677788888888888888
Q ss_pred HHHHHHHHHHHH
Q 040136 307 HEAAKLVDRMLV 318 (681)
Q Consensus 307 ~~a~~~~~~~~~ 318 (681)
++|.++++.+.+
T Consensus 275 ~~A~~~~~~l~~ 286 (306)
T 3dra_A 275 NESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 889988888875
No 114
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.78 E-value=1.5e-07 Score=82.84 Aligned_cols=161 Identities=12% Similarity=0.011 Sum_probs=108.1
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHH-H
Q 040136 117 YYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDV-L 195 (681)
Q Consensus 117 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~-~ 195 (681)
+......+.+.|++++|...++++.+..+ .+..++..+...|.+.|++++|+..|+++... .|+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 44556667788888888888888777654 36677888888888888888888888887622 2244333322212 1
Q ss_pred HhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCChhHH
Q 040136 196 VAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVP-NSVVYQTLIHALSKSNRVSEA 274 (681)
Q Consensus 196 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A 274 (681)
...+...+|+..|++.++... -+...+..+...+...|++++|...|+++.+....+ +...+..+..++...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 233344456777777777532 246677777777888888888888888877765221 245677777788888888888
Q ss_pred HHHHHHHH
Q 040136 275 LMLLEEMI 282 (681)
Q Consensus 275 ~~~~~~m~ 282 (681)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87777655
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.74 E-value=2.6e-07 Score=98.47 Aligned_cols=154 Identities=12% Similarity=0.028 Sum_probs=117.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040136 498 RGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEF 577 (681)
Q Consensus 498 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 577 (681)
.|++++|.+.+++..+.. +.+...+..+...|...|++++|...|+++++... .+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988763 56788899999999999999999999999998743 3678889999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHC
Q 040136 578 LRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKE---GLFDDAFLILHKGVAN 654 (681)
Q Consensus 578 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 654 (681)
+++..+.. +.+...+..+..++...|++++|++.++++.+.. +.+...+..+..++... |++++|.+.++++++.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998853 3357888999999999999999999999999862 33577888899999999 9999999999999885
Q ss_pred C
Q 040136 655 G 655 (681)
Q Consensus 655 g 655 (681)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
No 116
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.73 E-value=2.7e-07 Score=75.73 Aligned_cols=100 Identities=14% Similarity=0.071 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 557 SCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHF 636 (681)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 636 (681)
.+...+..|.+.|++++|++.|++.++.. +.+...|..+..++.+.|++++|+..++++++.+ +.+...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 44455555666666666666666655531 2245556666666666666666666666666532 223555666666666
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCH
Q 040136 637 KEGLFDDAFLILHKGVANGFVPND 660 (681)
Q Consensus 637 ~~g~~~~A~~~~~~~~~~g~~~~~ 660 (681)
..|++++|.+.|+++++ +.|+.
T Consensus 93 ~~~~~~~A~~~~~~al~--l~P~~ 114 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ--VDPSN 114 (126)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HCCCHHHHHHHHHHHHH--HCcCC
Confidence 66666666666666665 34443
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.71 E-value=8.5e-07 Score=80.74 Aligned_cols=133 Identities=6% Similarity=-0.103 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 485 TVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILING 564 (681)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 564 (681)
...+..+...+...|++++|.+.+++.. +++..++..+...|...|++++|+..|+++++... .+...+..+..+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~ 80 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHH
Confidence 3455667777888888888888888763 55777888888888888888888888888887642 366778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040136 565 LCRTRKANTALEFLRDMIHRGLT--------------P-DIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD 624 (681)
Q Consensus 565 ~~~~g~~~~A~~~~~~~~~~~~~--------------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 624 (681)
+...|++++|++.+++..+.... | ....+..+..++...|++++|...|+++.+. .|+
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~ 153 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSE 153 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCS
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc--Ccc
Confidence 88888888888888888875211 1 1256777788888888888888888888874 454
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.71 E-value=6.2e-07 Score=87.02 Aligned_cols=193 Identities=9% Similarity=0.003 Sum_probs=101.8
Q ss_pred cCCHHHHHHHHHHHHHhC------CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc-CHh----hHHHH
Q 040136 369 SGRFDEAKAIFYDSMLSV------GCIPDV----FTFNILIHGLCKQRRFGSALELVNAMAVKGCEP-NIV----TYTIL 433 (681)
Q Consensus 369 ~g~~~~a~~~~~~~~~~~------~~~p~~----~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~----~~~~l 433 (681)
.|++++|.+ +++...+. +..++. ..|......|...|++++|...+.+..+..... +.. +|..+
T Consensus 4 ~~~~~eA~~-~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 4 AQKISEAHE-HIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp HHHHHHHHH-HHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHH-HHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456667777 55443321 112232 234455555666666666666666665542111 111 34444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 434 VDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTA-NTVTYNTLIHAFLRRGSLHEAHKLVNDML 512 (681)
Q Consensus 434 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 512 (681)
..+|.+.|++++|...|++.++. ....|-.. ...++..+..+|.. |++++|++.|++.+
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l-------------------~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al 142 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVM-------------------YVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAA 142 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHH-------------------HHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHH-------------------HHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 45555555555555555444331 11111110 12455666666666 77777777777765
Q ss_pred hCCCC----C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 513 FRGCP----L-DEITYNGLIKALCNAGAVDKGLGLFEEMMRK----GIKPS-SISCNILINGLCRTRKANTALEFLRDMI 582 (681)
Q Consensus 513 ~~~~~----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 582 (681)
+.... . ...++..+...|.+.|++++|+..|+++++. +..+. ...+..++.++...|++++|...+++.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 143 AVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 53100 0 1345666677777777777777777776653 11111 1245555566666677777777777766
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.68 E-value=2.3e-06 Score=82.33 Aligned_cols=165 Identities=7% Similarity=-0.063 Sum_probs=127.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHH
Q 040136 489 NTLIHAFLRRGSLHEAHKLVNDMLFRGC-PLDE----ITYNGLIKALCNAGAVDKGLGLFEEMMRKGIK-PS----SISC 558 (681)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~ 558 (681)
...+..+...|++++|..++++..+... .++. ..+..+...+...|++++|+..|+++.+.... ++ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3346778899999999999999887531 1221 13335667777788999999999999984222 22 3468
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHH
Q 040136 559 NILINGLCRTRKANTALEFLRDMIHR-----GLTPD-IVTYNSLINGLCKMGCIQEALNLFDKLQAE----GIYPD-AVT 627 (681)
Q Consensus 559 ~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~ 627 (681)
+.++..|...|++++|+..++++++. +..+. ..++..+..+|.+.|++++|+..+++.++. +..+. ..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 99999999999999999999998841 12222 347888999999999999999999998864 22222 568
Q ss_pred HHHHHHHHHhcCC-hhHHHHHHHHHHH
Q 040136 628 YNTLISWHFKEGL-FDDAFLILHKGVA 653 (681)
Q Consensus 628 ~~~l~~~~~~~g~-~~~A~~~~~~~~~ 653 (681)
|..+..+|.+.|+ +++|.+.++++++
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8899999999995 6999999998875
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.67 E-value=2.4e-06 Score=82.22 Aligned_cols=168 Identities=8% Similarity=-0.054 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--H
Q 040136 486 VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLD-----EITYNGLIKALCNAGAVDKGLGLFEEMMRKGI---KPS--S 555 (681)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~--~ 555 (681)
..+...+..+...|++++|.+.+.+..+...... ...+..+...+...|++++|...++++.+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455567778999999999999998887632211 12234456667788999999999999986421 122 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC-
Q 040136 556 ISCNILINGLCRTRKANTALEFLRDMIH---R-GLTP--DIVTYNSLINGLCKMGCIQEALNLFDKLQAEG----IYPD- 624 (681)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~- 624 (681)
.+++.++..|...|++++|+..+++..+ . +..+ ...++..+..+|...|++++|+..+++..+.. ....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 5889999999999999999999999873 2 1111 12578889999999999999999999988641 1111
Q ss_pred HHHHHHHHHHHHhcCChhHH-HHHHHHHHH
Q 040136 625 AVTYNTLISWHFKEGLFDDA-FLILHKGVA 653 (681)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 653 (681)
..+|..+..+|.+.|++++| ...++++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56888999999999999999 777887764
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.64 E-value=2.1e-06 Score=78.11 Aligned_cols=128 Identities=11% Similarity=-0.064 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLC 601 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 601 (681)
.+..+...+...|++++|...|+++. .|+...+..+...+...|++++|++.+++..+.. +.+...|..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34556677778888888888888764 4577888888888888888888888888888753 345677888888888
Q ss_pred hcCCHHHHHHHHHHHHHCC--------------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040136 602 KMGCIQEALNLFDKLQAEG--------------IYPD-AVTYNTLISWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 602 ~~g~~~~A~~~~~~~~~~~--------------~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
..|++++|+..|+++.+.. ..|+ ...+..+..+|.+.|++++|...++++++.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 8888888888888888742 1111 267778888888888888888888888874
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.61 E-value=1.8e-06 Score=74.87 Aligned_cols=128 Identities=13% Similarity=0.023 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLC 601 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 601 (681)
.+..+...+...|++++|...|+++++... .+...+..+..++...|++++|++.+++..+.. +.+...|..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 344444555555555555555555555421 244555555555555666666666666555531 224455555556666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCChhHHHHHHHHHH
Q 040136 602 KMGCIQEALNLFDKLQAEGIYPDAVTYNT--LISWHFKEGLFDDAFLILHKGV 652 (681)
Q Consensus 602 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~ 652 (681)
..|++++|...++++.+.. +.+...+.. .+..+...|++++|.+.+++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 6666666666666665531 222333322 2223555566666666655543
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.61 E-value=9.5e-07 Score=72.46 Aligned_cols=97 Identities=12% Similarity=0.055 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 521 ITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGL 600 (681)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 600 (681)
..+...+..|.+.|++++|+..|+++++... .+...|..+..+|...|++++|++.+++.++.+ +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 3455566666677777777777777666532 255666666777777777777777777766642 22456666677777
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 040136 601 CKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~~ 619 (681)
...|++++|++.|++.++.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 7777777777777777763
No 124
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.60 E-value=5.5e-07 Score=81.26 Aligned_cols=157 Identities=10% Similarity=-0.050 Sum_probs=108.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCC
Q 040136 496 LRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK----GIK-PSSISCNILINGLCRTRK 570 (681)
Q Consensus 496 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~ 570 (681)
...|++++|.++++.+... ......++..+...+...|++++|...++++.+. +.. .....+..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4568888888855554432 2345667788888888888888888888887762 111 124567778888888899
Q ss_pred HHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHhcC
Q 040136 571 ANTALEFLRDMIHR----GLTP--DIVTYNSLINGLCKMGCIQEALNLFDKLQAEG---IYPD--AVTYNTLISWHFKEG 639 (681)
Q Consensus 571 ~~~A~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~--~~~~~~l~~~~~~~g 639 (681)
+++|.+.+++..+. +..+ ....+..+...+...|++++|...+++..+.. -.+. ..++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99888888887653 1111 23456777888888899999998888877531 0111 234567788888899
Q ss_pred ChhHHHHHHHHHHH
Q 040136 640 LFDDAFLILHKGVA 653 (681)
Q Consensus 640 ~~~~A~~~~~~~~~ 653 (681)
++++|...++++++
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999888888776
No 125
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.59 E-value=4.5e-06 Score=80.34 Aligned_cols=199 Identities=12% Similarity=0.020 Sum_probs=128.6
Q ss_pred CCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHH-
Q 040136 111 CHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRES---LFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFR- 186 (681)
Q Consensus 111 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~- 186 (681)
.|+......+...+.-.- ..++. ........ .+...+..+...|++++|...+++........++..
T Consensus 43 ~~~~~~l~~i~~~l~~~~-----~~~~~----~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~ 113 (293)
T 3u3w_A 43 YPSMDILQGIAAKLQIPI-----IHFYE----VLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQ 113 (293)
T ss_dssp CCCHHHHHHHHHHHTCCT-----HHHHH----TTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred CCCHHHHHHHHHHhCcCH-----HHHhC----CCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHH
Confidence 467777766666655221 11221 11111222 233446778889999999999998874322233321
Q ss_pred ---hHHHHHHHHHhcCCcCcHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCChhHHHHHHHHHHh----C-CCCC
Q 040136 187 ---SYNVVLDVLVAGNCHKVAPNLFYDMLSKGIS-PT----VYTFGVVMKALCMVNEVDSACSLLRDMTK----H-GCVP 253 (681)
Q Consensus 187 ---~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~-~~~~ 253 (681)
.+..+...+...|++++|+..|++.++.... ++ ..+++.+..+|...|++++|...|+++.+ . +..+
T Consensus 114 ~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 193 (293)
T 3u3w_A 114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE 193 (293)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchh
Confidence 2334556666778889999999998874322 22 22578888888889999999988888774 1 1112
Q ss_pred -ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 040136 254 -NSVVYQTLIHALSKSNRVSEALMLLEEMILM----GCTSD-VQTFNDVIHGLCKVN-RIHEAAKLVDRMLV 318 (681)
Q Consensus 254 -~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~~-~~~~a~~~~~~~~~ 318 (681)
...++..+..+|.+.|++++|.+.+++..+. +..+. ..+|..+..++.+.| ++++|.+.+++...
T Consensus 194 ~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 2246778888888889999988888877642 21222 567777888888888 46888888877753
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.58 E-value=2.5e-06 Score=73.82 Aligned_cols=131 Identities=12% Similarity=0.040 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 485 TVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILING 564 (681)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 564 (681)
...+..+...+...|++++|...+++..... +.+..++..+..++...|++++|...++++.+... .+...+..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 4567778888999999999999999998874 66788999999999999999999999999998743 367889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 040136 565 LCRTRKANTALEFLRDMIHRGLTPDIVTYNS--LINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 565 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
+...|++++|.+.+++..+.. +.+...+.. .+..+...|++++|+..+++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999852 224445533 34447788999999999887754
No 127
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.57 E-value=4.1e-05 Score=73.70 Aligned_cols=226 Identities=13% Similarity=0.102 Sum_probs=152.3
Q ss_pred cCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCC
Q 040136 405 QRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEG-QLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTA 483 (681)
Q Consensus 405 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 483 (681)
.+..++|+++++.++..+ +-+..+|+.-...+...| .+++++..++.++...+ .
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP------------------------K 121 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL------------------------K 121 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC------------------------C
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC------------------------C
Confidence 344467888888887763 234555666666666666 47777777777766532 2
Q ss_pred CHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHCCCCC
Q 040136 484 NTVTYNTLIHAFLRR-G-SLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVD--------KGLGLFEEMMRKGIKP 553 (681)
Q Consensus 484 ~~~~~~~li~~~~~~-g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~p 553 (681)
+..+|+.-..++.+. + ++++++++++.+.+.. +-|..+|+.-...+.+.|.++ ++++.++++++..+.
T Consensus 122 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~- 199 (349)
T 3q7a_A 122 SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR- 199 (349)
T ss_dssp CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-
T ss_pred cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-
Confidence 667777766666665 6 7788888888888764 557777777666666666665 888888888887544
Q ss_pred CHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--------------------
Q 040136 554 SSISCNILINGLCRTRK-------ANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCI-------------------- 606 (681)
Q Consensus 554 ~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-------------------- 606 (681)
|...|+.....+.+.++ ++++++.+++++... +-|...|+-+-..+.+.|+.
T Consensus 200 N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (349)
T 3q7a_A 200 NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDI 278 (349)
T ss_dssp CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-------
T ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccc
Confidence 77888887777777775 678888888888752 33677777766666666653
Q ss_pred HHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 040136 607 QEALNLFDKLQAEG-----IYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPN 659 (681)
Q Consensus 607 ~~A~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 659 (681)
.....+...+...+ -.++...+..+++.|...|+.++|.++++.+.+. ..|-
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpi 335 (349)
T 3q7a_A 279 ETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQM 335 (349)
T ss_dssp -------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGG
T ss_pred hhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChH
Confidence 22333333333221 0246777888899999999999999999998754 4443
No 128
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.57 E-value=9.3e-07 Score=74.87 Aligned_cols=96 Identities=9% Similarity=-0.033 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 521 ITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGL 600 (681)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 600 (681)
..+..+...+.+.|++++|+..|+++++..+. +...|..+..+|...|++++|++.|++..+.. +.+...|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 34444455555555555555555555554221 34455555555555555555555555555431 11234444555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 040136 601 CKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~ 618 (681)
...|++++|+..|+++++
T Consensus 115 ~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555555
No 129
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.56 E-value=3.2e-07 Score=80.80 Aligned_cols=121 Identities=8% Similarity=0.057 Sum_probs=70.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--H
Q 040136 496 LRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILING-LCRTRKA--N 572 (681)
Q Consensus 496 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~ 572 (681)
...|++++|...++...+.. +.+...+..+...|...|++++|...|+++.+... .+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchH
Confidence 34566666666666666552 44566666666666666677777766666666432 245555555655 5566666 6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 573 TALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 573 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
+|...+++.++.. +.+...+..+..++...|++++|+..++++.+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 6666666666542 223455556666666666666666666666663
No 130
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.55 E-value=8.5e-07 Score=75.12 Aligned_cols=103 Identities=10% Similarity=-0.102 Sum_probs=90.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 040136 554 SSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYP-DAVTYNTLI 632 (681)
Q Consensus 554 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 632 (681)
+...+..+...+.+.|++++|++.|++.+... +.+...|..+..+|...|++++|+..|+++.+. .| +...|..+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHH
Confidence 34577888899999999999999999999863 346888999999999999999999999999995 45 477889999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 040136 633 SWHFKEGLFDDAFLILHKGVANGFVPNDA 661 (681)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 661 (681)
.+|...|++++|...|+++++ +.|+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 999999999999999999998 557765
No 131
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.55 E-value=3.5e-06 Score=78.35 Aligned_cols=139 Identities=8% Similarity=-0.075 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPD--IVTYNSLING 599 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~ 599 (681)
....+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHH
Confidence 34456667778888888888888887654 443355666677888888999888888655431 111 2356677888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 040136 600 LCKMGCIQEALNLFDKLQAEGIYPD--AVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYI 665 (681)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 665 (681)
+...|++++|+..|++.......|. .........++.+.|+.++|...|+++.. ..|+...+..
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~~~~~~a 246 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPEPKVAAA 246 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHHHHHH
Confidence 8888999999999888875433253 34667777888888999999999998887 4566443333
No 132
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.53 E-value=2.4e-06 Score=70.39 Aligned_cols=94 Identities=7% Similarity=0.019 Sum_probs=37.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 523 YNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCK 602 (681)
Q Consensus 523 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 602 (681)
+..+...+...|++++|...|+++.+... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 33333444444444444444444443311 123333344444444444444444444443321 1123333334444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 040136 603 MGCIQEALNLFDKLQA 618 (681)
Q Consensus 603 ~g~~~~A~~~~~~~~~ 618 (681)
.|++++|...++++.+
T Consensus 93 ~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALE 108 (131)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHh
Confidence 4444444444444443
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.53 E-value=1.8e-05 Score=76.03 Aligned_cols=173 Identities=12% Similarity=0.043 Sum_probs=126.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040136 428 VTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKL 507 (681)
Q Consensus 428 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 507 (681)
..+...+..+...|++++|...+.+.++...... ... .....+..+...+...|++++|+..
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~---~~~---------------~~~~~~~~~~~~~~~~~~~~~A~~~ 137 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP---EFQ---------------QFLQWQYYVAAYVLKKVDYEYCILE 137 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCH---HHH---------------HHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCCh---hHH---------------HHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 3455567778889999999998888777532100 000 0112234466677888999999999
Q ss_pred HHHHHhCCC---CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCC-CC--CHHHHHHHHHHHHhcCCHHHHHH
Q 040136 508 VNDMLFRGC---PLD--EITYNGLIKALCNAGAVDKGLGLFEEMMR---KGI-KP--SSISCNILINGLCRTRKANTALE 576 (681)
Q Consensus 508 ~~~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~-~p--~~~~~~~l~~~~~~~g~~~~A~~ 576 (681)
+++..+... .+. ..+++.+...|...|++++|...|+++.+ ... .+ ...++..++..|...|++++|++
T Consensus 138 ~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~ 217 (293)
T 2qfc_A 138 LKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY 217 (293)
T ss_dssp HHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHH
Confidence 999886421 111 45888999999999999999999999883 211 11 12588899999999999999999
Q ss_pred HHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 040136 577 FLRDMIHR----GLTP-DIVTYNSLINGLCKMGCIQEA-LNLFDKLQA 618 (681)
Q Consensus 577 ~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 618 (681)
.+++.++. +... -..+|..+..++.+.|++++| ...++++..
T Consensus 218 ~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 218 QVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 99998763 1111 157788999999999999999 777888765
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.53 E-value=3.1e-06 Score=69.71 Aligned_cols=121 Identities=12% Similarity=0.005 Sum_probs=102.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 554 SSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLIS 633 (681)
Q Consensus 554 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 633 (681)
+...+..++..+...|++++|.+.+++..+.. +.+...+..+..++...|++++|+..++++.+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 45677888899999999999999999998852 3467888899999999999999999999999862 445778899999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCccc
Q 040136 634 WHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKEINME 677 (681)
Q Consensus 634 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 677 (681)
++...|++++|...++++++.. +.+...+..+...+.+.|+.+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999853 335677888888888888753
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.53 E-value=2.9e-07 Score=78.17 Aligned_cols=94 Identities=11% Similarity=-0.048 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 558 CNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFK 637 (681)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 637 (681)
+..+...+...|++++|+..|++..... +.+...|..+..++...|++++|+..|+++++.. +.+...+..+..+|..
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 3344444444455555555554444421 1234444444444445555555555555544421 1123344444444555
Q ss_pred cCChhHHHHHHHHHHH
Q 040136 638 EGLFDDAFLILHKGVA 653 (681)
Q Consensus 638 ~g~~~~A~~~~~~~~~ 653 (681)
.|++++|...|+++++
T Consensus 102 ~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 102 XGELAEAESGLFLAQE 117 (148)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555554444
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.53 E-value=4.1e-07 Score=86.90 Aligned_cols=195 Identities=9% Similarity=-0.020 Sum_probs=122.4
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040136 426 NIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAH 505 (681)
Q Consensus 426 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 505 (681)
+...+..+...+.+.|++++|...|++.+... +.+...|..+..+|.+.|++++|.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------------------------p~~~~~~~~la~~~~~~~~~~~A~ 58 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN------------------------PLVAVYYTNRALCYLKMQQPEQAL 58 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------CccHHHHHHHHHHHHHhcCHHHHH
Confidence 34556667777788888888888887777653 226777888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040136 506 KLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRG 585 (681)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 585 (681)
..+++.++.. +.+...+..+..+|...|++++|...|+++.+.+.. +...+...+....+. .++.. +.......
T Consensus 59 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~ 132 (281)
T 2c2l_A 59 ADCRRALELD-GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERR 132 (281)
T ss_dssp HHHHHHTTSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHH
Confidence 8888888763 567778888888888888888888888888764211 000011111111111 11111 12222333
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhc-CChhHHHHHHHHHHHC
Q 040136 586 LTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVT-YNTLISWHFKE-GLFDDAFLILHKGVAN 654 (681)
Q Consensus 586 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 654 (681)
...+......+.. + ..|+.++|++.++++.+. .|+... ...+...+.+. +.+++|.++|.++.+.
T Consensus 133 ~~~~~~i~~~l~~-l-~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 133 IHQESELHSYLTR-L-IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp CCCCCHHHHHHHH-H-HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HhhhHHHHHHHHH-H-HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3444444444433 2 258888888888888764 565443 33444444444 6678888888887753
No 137
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.52 E-value=4.2e-06 Score=68.15 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=10.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 593 YNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
+..+..++...|++++|...++++.+
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 80 WYNLGNAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33333333344444444444443333
No 138
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.52 E-value=4.2e-06 Score=68.17 Aligned_cols=116 Identities=18% Similarity=0.182 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISW 634 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 634 (681)
...+..+...+...|++++|.+.++++.+.. +.+...+..+..++...|++++|+.+++++.+.. +.+..++..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5677788888889999999999999988752 3467788889999999999999999999999863 4467788999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 635 HFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKE 673 (681)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 673 (681)
+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 999999999999999999843 23455555555555443
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.51 E-value=2.7e-06 Score=70.40 Aligned_cols=97 Identities=11% Similarity=0.089 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 520 EITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLING 599 (681)
Q Consensus 520 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 599 (681)
...+..+...+...|++++|...|+++.+... .+...+..+...+...|++++|++.+++..+.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 34444444444455555555555555444321 134444444444444555555555554444431 1233444444444
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 040136 600 LCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~ 618 (681)
+...|++++|+..++++.+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 4555555555555554444
No 140
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.51 E-value=2.5e-06 Score=83.72 Aligned_cols=129 Identities=9% Similarity=-0.098 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPS--------------SISCNILINGLCRTRKANTALEFLRDMIHRGLT 587 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 587 (681)
.+..+...|.+.|++++|+..|+++++...... ...|..+..+|.+.|++++|+..+++.++.. +
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 227 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-S 227 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 344444444444555555555554444321111 3555566666666666666666666666542 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 040136 588 PDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDA-FLILHKGV 652 (681)
Q Consensus 588 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 652 (681)
.+...|..+..+|...|++++|+..|+++++.. +.+...+..+..++.+.|+.++| ...+++|.
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245556666666666666666666666666531 22344555566666666666655 33444444
No 141
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.51 E-value=4.8e-05 Score=72.89 Aligned_cols=246 Identities=13% Similarity=0.027 Sum_probs=165.1
Q ss_pred HhcCChh-HHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHh
Q 040136 403 CKQRRFG-SALELVNAMAVKGCEPNIVTYTILVDGFCKEGQ---LEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLL 478 (681)
Q Consensus 403 ~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 478 (681)
.+.|.+. +|+.+.+.+...+ +-+..+|+.--..+...+. .+... ..+++++.++..+..
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~----------------~~l~~EL~~~~~~L~ 102 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESA----------------ALVKAELGFLESCLR 102 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHH----------------HHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhh----------------HHHHHHHHHHHHHHH
Confidence 3455554 6888888888663 2233444443333322221 11110 113344555555555
Q ss_pred cCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCH
Q 040136 479 EGVTANTVTYNTLIHAFLRRG--SLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGA-VDKGLGLFEEMMRKGIKPSS 555 (681)
Q Consensus 479 ~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~ 555 (681)
..++ +..+|+.-..++.+.+ .+++++.+++.+.+.. +-|..+|+.-...+...|. +++++..++.+++..+. |.
T Consensus 103 ~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~ 179 (331)
T 3dss_A 103 VNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NY 179 (331)
T ss_dssp HCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CH
T ss_pred hCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CH
Confidence 4333 7888888887888888 4899999999999885 6688899988888888888 59999999999998654 77
Q ss_pred HHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CCHHHHH
Q 040136 556 ISCNILINGLCRT--------------RKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKM-----------GCIQEAL 610 (681)
Q Consensus 556 ~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------g~~~~A~ 610 (681)
..|+.....+... +.++++++.+.+.+... +-|...|+-+-..+... +.+++++
T Consensus 180 SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el 258 (331)
T 3dss_A 180 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSEL 258 (331)
T ss_dssp HHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHH
Confidence 8888777776655 45789999999998852 44677787665555554 4578999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC
Q 040136 611 NLFDKLQAEGIYPDAVTYNTLISW-----HFKEGLFDDAFLILHKGVANGFVPND-ATWYILVRNLVKEI 674 (681)
Q Consensus 611 ~~~~~~~~~~~~p~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~ll~~~~~~g 674 (681)
+.++++.+. .||. .|..+..+ .-..|..+++...+.++.+ +.|.. .-|.-+...+.-..
T Consensus 259 ~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~~y~d~~~~~~~~~ 323 (331)
T 3dss_A 259 ESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLRSKFLLEN 323 (331)
T ss_dssp HHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhhHHHHHHHHHHHHH
Confidence 999999984 6764 34332222 2245778899999999998 56754 34455555544433
No 142
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.49 E-value=9.4e-05 Score=71.22 Aligned_cols=171 Identities=8% Similarity=-0.009 Sum_probs=98.4
Q ss_pred HHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhc-C
Q 040136 122 DKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGG-VPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAG-N 199 (681)
Q Consensus 122 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~ 199 (681)
......+..++|.++.+.++..++. +..+|+.--..+...| .+++++.+++.+. ... +-+..+|+....++... +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L-~~n-PKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFA-VQN-LKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-HTT-CCCHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HhC-CCcHHHHHHHHHHHHHhcC
Confidence 3344445556788888888777753 6666766666666666 4777777777777 222 45566677666666555 5
Q ss_pred -CcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChh--------HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 040136 200 -CHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVD--------SACSLLRDMTKHGCVPNSVVYQTLIHALSKSNR 270 (681)
Q Consensus 200 -~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 270 (681)
++++++++++.+++...+ +..+|+.-.-.+.+.|.++ ++++.++++.+.+ +-|..+|+.....+.+.++
T Consensus 139 ~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTT
T ss_pred CChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccc
Confidence 667777777777765432 5555555554444444444 5566666665554 3455555555555555443
Q ss_pred -------hhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 271 -------VSEALMLLEEMILMGCTSDVQTFNDVIH 298 (681)
Q Consensus 271 -------~~~A~~~~~~m~~~~~~~~~~~~~~li~ 298 (681)
++++++.++++.... +-|...|+-+-.
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~ 250 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRG 250 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 344555554444432 334444444333
No 143
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.48 E-value=1.8e-06 Score=71.00 Aligned_cols=103 Identities=15% Similarity=0.072 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHHHH
Q 040136 558 CNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEG--IYPD----AVTYNTL 631 (681)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~----~~~~~~l 631 (681)
+..++..+.+.|++++|++.|++.++.. +-+...|..+..+|...|++++|+..+++.++.+ ..++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3444455555555555555555554431 1234445555555555555555555555554420 0011 1244445
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 040136 632 ISWHFKEGLFDDAFLILHKGVANGFVPNDATW 663 (681)
Q Consensus 632 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 663 (681)
..++...|++++|++.|++.++ ..||..+.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~--~~~~~~~~ 119 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS--EFRDPELV 119 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HSCCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--hCcCHHHH
Confidence 5555556666666666666554 33444443
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.48 E-value=1.2e-06 Score=77.07 Aligned_cols=119 Identities=13% Similarity=0.093 Sum_probs=70.4
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 040136 532 NAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLING-LCKMGCI--QE 608 (681)
Q Consensus 532 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~~ 608 (681)
..|++++|...+++.++... .+...+..+...|...|++++|...+++..+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 35566666666666665432 255666666666666677777777766666542 2245555566666 5566666 66
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 609 ALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 609 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
|+..++++.+.. +.+...+..+..+|...|++++|...++++++
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 777666666642 22355566666666666777777777766666
No 145
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.48 E-value=2.8e-06 Score=70.26 Aligned_cols=119 Identities=13% Similarity=0.001 Sum_probs=99.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 553 PSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLI 632 (681)
Q Consensus 553 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 632 (681)
.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|+..++++.+.. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 356788899999999999999999999999852 3367889999999999999999999999999863 44578899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCc
Q 040136 633 SWHFKEGLFDDAFLILHKGVANGFVPN-DATWYILVRNLVKEIN 675 (681)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~ 675 (681)
.++.+.|++++|.+.++++++. .|+ ...+..+...+.+.|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999999984 444 4666677767666553
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.47 E-value=2e-06 Score=77.56 Aligned_cols=136 Identities=11% Similarity=-0.042 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFR----GC-PLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK----GIKP- 553 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p- 553 (681)
....+..+...+...|++++|...+++..+. +. +....++..+...|...|++++|...+++..+. +-.+
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 5678888999999999999999999988762 11 224567888889999999999999999988764 2111
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 554 -SSISCNILINGLCRTRKANTALEFLRDMIHR---GLTPD--IVTYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 554 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
....+..+...+...|++++|.+.+++..+. ...+. ..++..+..++...|++++|...+++..+.
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 2356788899999999999999999998752 11111 234678888999999999999999988764
No 147
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.46 E-value=5.6e-06 Score=67.87 Aligned_cols=95 Identities=15% Similarity=0.105 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 557 SCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHF 636 (681)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 636 (681)
.+..+...+...|++++|++.|++.++.. +.+...|..+..++.+.|++++|+..++++++.. +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34444445555555555555555555431 2234455555555555555555555555555531 223445555555555
Q ss_pred hcCChhHHHHHHHHHHH
Q 040136 637 KEGLFDDAFLILHKGVA 653 (681)
Q Consensus 637 ~~g~~~~A~~~~~~~~~ 653 (681)
..|++++|...++++++
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555555554
No 148
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.46 E-value=2.3e-06 Score=79.49 Aligned_cols=190 Identities=13% Similarity=-0.059 Sum_probs=129.4
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHH-------HHHHHcCCCchHHHHHHHHHHH------------cCC-----
Q 040136 90 LPLDVDTSMEIFTWAGSQEGYCHTFDVYYVL-------IDKLGANKEFKVIDSVLLQMKE------------EGI----- 145 (681)
Q Consensus 90 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~------------~~~----- 145 (681)
..+++..|++.|..+....+ -....|..+ ...+.+.++..++...+..... .|.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP--~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE--SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhCh--hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 47899999999999887765 455566555 4455555555555555555444 110
Q ss_pred ---CCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCC--h
Q 040136 146 ---ICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPT--V 220 (681)
Q Consensus 146 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~--~ 220 (681)
.....+...+...+...|++++|.++|+.+. . + .|+......+...+.+.+++++|+..|+...... .|. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~-~-~-~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAP-V-A-GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSC-C-T-TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHH-h-c-CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 0113455567788888999999999998887 2 2 2433355556667888899999999987554431 111 2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 040136 221 YTFGVVMKALCMVNEVDSACSLLRDMTKHGCVP--NSVVYQTLIHALSKSNRVSEALMLLEEMILMG 285 (681)
Q Consensus 221 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 285 (681)
..+..+..++...|++++|+..|++.......| ..........++.+.|+.++|..+|+++....
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 367777888888899999999998887543213 23456667778888899999999998888763
No 149
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.45 E-value=2.5e-06 Score=70.03 Aligned_cols=103 Identities=14% Similarity=0.120 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHHH
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRG--LTPD----IVTYNS 595 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~----~~~~~~ 595 (681)
.+..++..+.+.|++++|+..|+++++..+. +...|..+..+|...|++++|++.+++.++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3445555555666666666666665554322 44555555666666666666666666555421 0111 124555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 040136 596 LINGLCKMGCIQEALNLFDKLQAEGIYPDAVT 627 (681)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 627 (681)
+..++...|++++|++.|++.++. .||..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 118 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPEL 118 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHH
Confidence 566666666777777766666653 445443
No 150
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.45 E-value=9e-07 Score=75.05 Aligned_cols=99 Identities=11% Similarity=-0.125 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 519 DEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLIN 598 (681)
Q Consensus 519 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 598 (681)
+...+..+...+...|++++|+..|++++.... .+...|..+..+|...|++++|++.+++.+... +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 455566666677777777777777777776532 256666777777777777777777777777642 224556666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 040136 599 GLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~~ 619 (681)
++...|++++|+..|+++++.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777777763
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.40 E-value=6.8e-07 Score=80.35 Aligned_cols=158 Identities=8% Similarity=-0.062 Sum_probs=102.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---------------HHHHH
Q 040136 495 FLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPS---------------SISCN 559 (681)
Q Consensus 495 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---------------~~~~~ 559 (681)
....|+++++.+.++..... .......+..+...+...|++++|...|+++++...... ...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp --------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 34455555555555432221 112344566777888888999999999998887532211 26788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040136 560 ILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEG 639 (681)
Q Consensus 560 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 639 (681)
.+..+|...|++++|+..+++.++.. +.+...+..+..++...|++++|+..|+++.+.. +-+...+..+..++...|
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHH
Confidence 88889999999999999999988852 3467788888999999999999999999998852 335667778888888888
Q ss_pred ChhHHH-HHHHHHHHCC
Q 040136 640 LFDDAF-LILHKGVANG 655 (681)
Q Consensus 640 ~~~~A~-~~~~~~~~~g 655 (681)
+.+++. ..+..+...|
T Consensus 171 ~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 171 EARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHC-------------
T ss_pred HHHHHHHHHHHHHhccc
Confidence 777776 5666665543
No 152
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.40 E-value=1.8e-06 Score=82.34 Aligned_cols=95 Identities=12% Similarity=0.017 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 222 TFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLC 301 (681)
Q Consensus 222 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 301 (681)
.+..+...+...|++++|...|+...+.. +.+...|..+..+|.+.|++++|.+.+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34444444445555555555555544432 2244444555555555555555555555544432 233444444555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 040136 302 KVNRIHEAAKLVDRMLV 318 (681)
Q Consensus 302 ~~~~~~~a~~~~~~~~~ 318 (681)
..|++++|+..+++..+
T Consensus 84 ~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555554443
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.39 E-value=8.9e-06 Score=66.60 Aligned_cols=96 Identities=10% Similarity=0.037 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 521 ITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGL 600 (681)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 600 (681)
..+..+...+.+.|++++|+..|+++++... .+...|..+..++...|++++|+..+++.++.. +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 3455556666666666666666666666532 245666666666666666666666666666642 22455666666666
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 040136 601 CKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~ 618 (681)
...|++++|+..|+++.+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 677777777777766665
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.38 E-value=1.2e-05 Score=64.70 Aligned_cols=96 Identities=16% Similarity=0.000 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 556 ISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWH 635 (681)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 635 (681)
..+..++..+...|++++|.+.+++..... +.+...+..+..++...|++++|...++++.+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 445555556666666666666666665531 2245556666666666666666666666666642 22355566666666
Q ss_pred HhcCChhHHHHHHHHHHH
Q 040136 636 FKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 636 ~~~g~~~~A~~~~~~~~~ 653 (681)
...|++++|.+.++++.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 666666666666666665
No 155
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.37 E-value=9.7e-06 Score=79.51 Aligned_cols=132 Identities=5% Similarity=-0.035 Sum_probs=113.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLD---------------EITYNGLIKALCNAGAVDKGLGLFEEMMR 548 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 548 (681)
+...+..+...|.+.|++++|+..|++.++.. +.+ ..+|..+..+|.+.|++++|+..++++++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45678888999999999999999999999874 333 58899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 040136 549 KGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEA-LNLFDKLQA 618 (681)
Q Consensus 549 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 618 (681)
... .+...+..+..+|...|++++|+..|++.++.. +.+...+..+..++.+.|+.++| ...+++|..
T Consensus 225 ~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 LDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 753 378899999999999999999999999999852 33677888899999999999988 556777664
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.34 E-value=3.8e-06 Score=70.61 Aligned_cols=98 Identities=12% Similarity=-0.110 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 519 DEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLIN 598 (681)
Q Consensus 519 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 598 (681)
+...+..+...+.+.|++++|...|++++.... .+...|..+..++...|++++|+..+++.+..+ +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 334444555555666666666666666665432 245555556666666666666666666665532 223444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 040136 599 GLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~ 618 (681)
++...|++++|+..|+++.+
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666555
No 157
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.33 E-value=6.9e-06 Score=67.55 Aligned_cols=95 Identities=20% Similarity=0.192 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHHHH
Q 040136 558 CNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEG--IYPD----AVTYNTL 631 (681)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~----~~~~~~l 631 (681)
+..++..+...|++++|...+++..+.. +.+...+..+..++...|++++|+..++++.+.. ..++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3344444444444444444444444431 2233444444444444555555555554444421 0011 3344445
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 040136 632 ISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 632 ~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
..++...|++++|.+.++++.+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 5555555555555555555554
No 158
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.33 E-value=0.00017 Score=69.11 Aligned_cols=157 Identities=10% Similarity=0.059 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 040136 501 LHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAG--AVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRK-ANTALEF 577 (681)
Q Consensus 501 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~ 577 (681)
+++++.+++.+.... |-+..+|+.-...+.+.| .+++++.+++.+.+.... |...|+.-...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 678999999998874 678899998888888888 489999999999998654 88899988888888898 6999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----
Q 040136 578 LRDMIHRGLTPDIVTYNSLINGLCKM--------------GCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKE----- 638 (681)
Q Consensus 578 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----- 638 (681)
++++++.. +-|...|+.....+... +.++++++.+.+++... +-|...|+.+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 99999874 34778888777776655 45889999999999863 44677888777776665
Q ss_pred ------CChhHHHHHHHHHHHCCCCCCHHHHH
Q 040136 639 ------GLFDDAFLILHKGVANGFVPNDATWY 664 (681)
Q Consensus 639 ------g~~~~A~~~~~~~~~~g~~~~~~~~~ 664 (681)
+.++++++.++++++ +.||. .|.
T Consensus 246 ~~~~~~~~l~~el~~~~elle--~~pd~-~w~ 274 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQE--LEPEN-KWC 274 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH--HCTTC-HHH
T ss_pred cchHHHHHHHHHHHHHHHHHh--hCccc-chH
Confidence 468899999999998 67776 343
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.31 E-value=2.9e-05 Score=62.28 Aligned_cols=95 Identities=11% Similarity=0.030 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLC 601 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 601 (681)
.+..+...+...|++++|...|+++..... .+...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 444455555555566666665555555421 244555555555556666666666666555531 223455555566666
Q ss_pred hcCCHHHHHHHHHHHHH
Q 040136 602 KMGCIQEALNLFDKLQA 618 (681)
Q Consensus 602 ~~g~~~~A~~~~~~~~~ 618 (681)
..|++++|...+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 66666666666666655
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=2.1e-05 Score=66.29 Aligned_cols=97 Identities=18% Similarity=-0.006 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040136 554 SSISCNILINGLCRTRKANTALEFLRDMIHRGLTPD----IVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYN 629 (681)
Q Consensus 554 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 629 (681)
+...+..+...+...|++++|.+.+++..+. .|+ ...|..+..++...|++++|+..+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 3445555555556666666666666665553 333 4555556666666666666666666666531 22345556
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 040136 630 TLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
.+..++...|++++|...++++++
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666666665
No 161
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.26 E-value=8.7e-06 Score=66.92 Aligned_cols=109 Identities=14% Similarity=0.092 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGL--TPD----IVTYNS 595 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~~ 595 (681)
.+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++..+... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44455555555666666666666555542 22445555555566666666666666665554310 111 445556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 596 LINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLIS 633 (681)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 633 (681)
+..++...|++++|...|+++.+. .|+......+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 666666666666666666666663 345444444433
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.26 E-value=8.8e-06 Score=70.36 Aligned_cols=100 Identities=10% Similarity=-0.022 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 518 LDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLI 597 (681)
Q Consensus 518 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 597 (681)
.+...+..+...+.+.|++++|+..|+++++.... +...|..+..+|...|++++|+..+++.++.. +.+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 35667777788888888888888888888876432 67777888888888888888888888888752 23567777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 040136 598 NGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
.++...|++++|+..|+++++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 8888888888888888888774
No 163
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.26 E-value=7.2e-06 Score=68.88 Aligned_cols=95 Identities=12% Similarity=0.004 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 487 TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLC 566 (681)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 566 (681)
.+..+...+.+.|++++|...|+.+.... |.+...|..+..+|...|++++|+..|+++++.... +...+..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH
Confidence 34444555555666666666666555542 445555555555666666666666666665554322 3445555555566
Q ss_pred hcCCHHHHHHHHHHHHH
Q 040136 567 RTRKANTALEFLRDMIH 583 (681)
Q Consensus 567 ~~g~~~~A~~~~~~~~~ 583 (681)
..|++++|.+.|++.++
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666665554
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.25 E-value=3.4e-05 Score=64.06 Aligned_cols=97 Identities=8% Similarity=-0.006 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 520 EITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLING 599 (681)
Q Consensus 520 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 599 (681)
...+..+...+...|++++|...|+++++... .+...+..+..++...|++++|+..+++.++.. +.+...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 33444444444444444444444444444321 133444444444444444444444444444421 1133344444444
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 040136 600 LCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~ 618 (681)
+...|++++|+..|+++.+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 4444444444444444443
No 165
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.24 E-value=6.6e-06 Score=70.68 Aligned_cols=132 Identities=15% Similarity=0.031 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHH
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRKGIK-PS----SISCNILINGLCRTRKANTALEFLRDMIHR----GLTP-DIV 591 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~ 591 (681)
++..+...+...|++++|...++++.+.... ++ ..++..+...+...|++++|.+.+++..+. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444445555555555555555554432100 01 134555666666666666666666665542 1001 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 592 TYNSLINGLCKMGCIQEALNLFDKLQAE----GIYP-DAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
.+..+..++...|++++|...+++..+. +..+ ....+..+...+...|++++|.+.+++.++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5566667777777777777777776653 1111 134566677777788888888888877765
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.22 E-value=2.9e-05 Score=64.50 Aligned_cols=100 Identities=19% Similarity=0.056 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 553 PSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLI 632 (681)
Q Consensus 553 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 632 (681)
.+...+..+...+...|++++|+..+++.++.. +.+...|..+..++...|++++|+..++++.+.. +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 467888999999999999999999999998863 3467889999999999999999999999999863 34577899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHC
Q 040136 633 SWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
.++...|++++|...++++++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999873
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.21 E-value=3.2e-05 Score=66.78 Aligned_cols=100 Identities=17% Similarity=0.027 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 483 ANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILI 562 (681)
Q Consensus 483 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 562 (681)
.+...+..+...+.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|+..|+++++.... +...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 345677778888888888888888888888773 557788888888888888888888888888886432 577888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 040136 563 NGLCRTRKANTALEFLRDMIHR 584 (681)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~~ 584 (681)
.+|...|++++|++.|++.++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 8888888888888888888874
No 168
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.20 E-value=2.6e-05 Score=69.82 Aligned_cols=132 Identities=11% Similarity=-0.041 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040136 485 TVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDE----------------ITYNGLIKALCNAGAVDKGLGLFEEMMR 548 (681)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 548 (681)
...+..+...+...|++++|...|++.+... +.+. .++..+..+|...|++++|+..++++++
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4456677888999999999999999998863 2233 7888899999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHC
Q 040136 549 KGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEAL-NLFDKLQAE 619 (681)
Q Consensus 549 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 619 (681)
... .+...+..+..+|...|++++|++.|++.++.. +-+...+..+..++...++.+++. ..+..+...
T Consensus 117 ~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 117 IDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred hCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 743 367889999999999999999999999998852 335677888888888877777766 555555543
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.19 E-value=1.4e-05 Score=64.86 Aligned_cols=91 Identities=12% Similarity=-0.039 Sum_probs=54.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 040136 560 ILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYP-DAVTYNTLISWHFKE 638 (681)
Q Consensus 560 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 638 (681)
.+...+.+.|++++|+..+++.++.. +.+...|..+..++...|++++|+..++++++. .| +...+..+..++...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 34455556666666666666666531 224555666666666666666666666666663 33 345556666666666
Q ss_pred CChhHHHHHHHHHHH
Q 040136 639 GLFDDAFLILHKGVA 653 (681)
Q Consensus 639 g~~~~A~~~~~~~~~ 653 (681)
|++++|...++++++
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666666664
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=5.9e-05 Score=63.46 Aligned_cols=97 Identities=10% Similarity=0.070 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040136 519 DEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPS----SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYN 594 (681)
Q Consensus 519 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 594 (681)
+...+..+...+...|++++|...|+++.+. .|+ ...+..+..+|...|++++|++.+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 3444455555555555555555555555543 223 3445555555555666666666665555531 22344555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 595 SLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 595 ~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
.+..++...|++++|...|++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555566666666666666666655
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.18 E-value=1.8e-05 Score=62.87 Aligned_cols=97 Identities=6% Similarity=-0.065 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 040136 556 ISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYP--DAVTYNTLIS 633 (681)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~ 633 (681)
..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|+..++++.+.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 344455555666666666666666665542 2245556666666666666666666666666642 22 3556666666
Q ss_pred HHHhc-CChhHHHHHHHHHHHC
Q 040136 634 WHFKE-GLFDDAFLILHKGVAN 654 (681)
Q Consensus 634 ~~~~~-g~~~~A~~~~~~~~~~ 654 (681)
++... |++++|.+.++++++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 66666 6777777766666653
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.18 E-value=4.9e-05 Score=77.70 Aligned_cols=209 Identities=11% Similarity=0.059 Sum_probs=145.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCcc----ccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040136 434 VDGFCKEGQLEKANIIINEMLAKGLSLNTG----DRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVN 509 (681)
Q Consensus 434 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 509 (681)
...+.+.|++++|.+.|..+.+........ +........ ....+..+...|...|++++|.+.+.
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~al~~l~~~y~~~~~~~~a~~~~~ 79 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNE-----------QETSILELGQLYVTMGAKDKLREFIP 79 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHH-----------HHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhh-----------HHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 445677899999999999988865443220 000111100 11246778899999999999999998
Q ss_pred HHHhCCC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 040136 510 DMLFRGC-PLDE----ITYNGLIKALCNAGAVDKGLGLFEEMMRK----GIKPS-SISCNILINGLCRTRKANTALEFLR 579 (681)
Q Consensus 510 ~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 579 (681)
.+..... .++. .+.+.+...+...|++++|..++...... +..+. ..++..++..|...|++++|..+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 159 (434)
T 4b4t_Q 80 HSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIN 159 (434)
T ss_dssp HTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 8765311 1122 23333444455678999999999887653 22222 4677889999999999999999999
Q ss_pred HHHHC--CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHHhcCChhHHHHHH
Q 040136 580 DMIHR--GL--TP-DIVTYNSLINGLCKMGCIQEALNLFDKLQAE--GIY-P-D--AVTYNTLISWHFKEGLFDDAFLIL 648 (681)
Q Consensus 580 ~~~~~--~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~-p-~--~~~~~~l~~~~~~~g~~~~A~~~~ 648 (681)
+.... +. .+ ...++..++..|...|++++|..++++.... .+. | . ...+..++..+...|++++|...+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 160 DLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp HHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 88753 11 12 2457888899999999999999999988764 111 2 2 245667777788899999999988
Q ss_pred HHHHH
Q 040136 649 HKGVA 653 (681)
Q Consensus 649 ~~~~~ 653 (681)
.+..+
T Consensus 240 ~~a~~ 244 (434)
T 4b4t_Q 240 FESFE 244 (434)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 173
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.12 E-value=3.3e-05 Score=61.26 Aligned_cols=97 Identities=12% Similarity=0.020 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 040136 221 YTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTS--DVQTFNDVIH 298 (681)
Q Consensus 221 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~--~~~~~~~li~ 298 (681)
..+..+...+...|++++|...+++..+.. +.+..++..+..++...|++++|.+.+++..+.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 344455555555666666666666555543 3344555556666666666666666666665543 22 3555555666
Q ss_pred HHHhc-CCHHHHHHHHHHHHHC
Q 040136 299 GLCKV-NRIHEAAKLVDRMLVR 319 (681)
Q Consensus 299 ~~~~~-~~~~~a~~~~~~~~~~ 319 (681)
.+... |++++|.+.++.....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 66666 6666666666666544
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.11 E-value=5.1e-05 Score=62.16 Aligned_cols=90 Identities=17% Similarity=0.056 Sum_probs=39.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHH
Q 040136 527 IKALCNAGAVDKGLGLFEEMMRKGIKPSS---ISCNILINGLCRTRKANTALEFLRDMIHRGLTPD---IVTYNSLINGL 600 (681)
Q Consensus 527 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~ 600 (681)
...+...|++++|...|+++.+.... +. ..+..+..++...|++++|...+++..+.. +.+ ...+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHH
Confidence 34444455555555555554443211 11 234444444444455555555444444421 111 23344444444
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 040136 601 CKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~ 618 (681)
...|++++|+..|+++.+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 444444444444444444
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.11 E-value=2.8e-05 Score=63.00 Aligned_cols=91 Identities=16% Similarity=0.061 Sum_probs=44.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040136 491 LIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRK 570 (681)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 570 (681)
+...+.+.|++++|...+++.++.. |.+...|..+..++...|++++|+..|+++++.... +...+..+..++...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 3344445555555555555555442 334445555555555555555555555555544221 33444445555555555
Q ss_pred HHHHHHHHHHHHH
Q 040136 571 ANTALEFLRDMIH 583 (681)
Q Consensus 571 ~~~A~~~~~~~~~ 583 (681)
+++|+..+++.++
T Consensus 101 ~~~A~~~~~~al~ 113 (121)
T 1hxi_A 101 ANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.10 E-value=2.1e-05 Score=67.47 Aligned_cols=135 Identities=16% Similarity=0.133 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----
Q 040136 485 TVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCP-LD----EITYNGLIKALCNAGAVDKGLGLFEEMMRKGIK-PS---- 554 (681)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~---- 554 (681)
..++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...++++.+.... .+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 456778888999999999999999988764111 11 247788889999999999999999998764111 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHR----GLTP-DIVTYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
...+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++..+.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 456788889999999999999999988753 1111 1356778888999999999999999998763
No 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.08 E-value=4e-05 Score=65.96 Aligned_cols=62 Identities=11% Similarity=0.001 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 591 VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
..|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|...++++++
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 345555555566666666666666665532 22344555566666666666666666666655
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.08 E-value=3.7e-05 Score=78.91 Aligned_cols=87 Identities=11% Similarity=-0.004 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 040136 556 ISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISW 634 (681)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 634 (681)
..|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|+++++. .|+ ...+..+..+
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 445555555555555555555555555531 223445555555555555555555555555552 332 3344555555
Q ss_pred HHhcCChhHHH
Q 040136 635 HFKEGLFDDAF 645 (681)
Q Consensus 635 ~~~~g~~~~A~ 645 (681)
+.+.|+.++|.
T Consensus 395 ~~~~~~~~~a~ 405 (457)
T 1kt0_A 395 QKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.03 E-value=0.00017 Score=73.73 Aligned_cols=198 Identities=8% Similarity=-0.043 Sum_probs=119.6
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCC
Q 040136 121 IDKLGANKEFKVIDSVLLQMKEEGIICR----------------ESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPT 184 (681)
Q Consensus 121 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 184 (681)
.+.+...|++++|.+.+.++.+...... ..++..|+..|...|++++|.+.+..+....+.-++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3445566667777776666666442211 124667888888888888888888877633222222
Q ss_pred HH----hHHHHHHHHHhcCCcCcHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhC--CC--
Q 040136 185 FR----SYNVVLDVLVAGNCHKVAPNLFYDMLSK----GISPT-VYTFGVVMKALCMVNEVDSACSLLRDMTKH--GC-- 251 (681)
Q Consensus 185 ~~----~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~-- 251 (681)
.. ..+.+-..+...|+++.|..++.+.... +..+. ..++..+...+...|++++|..++.++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 21 1222222333557778888877776542 22222 345667777888888888888888776542 11
Q ss_pred -CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 252 -VPNSVVYQTLIHALSKSNRVSEALMLLEEMILM----GCTSD--VQTFNDVIHGLCKVNRIHEAAKLVDRMLV 318 (681)
Q Consensus 252 -~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 318 (681)
+....++..+++.|...|++++|..++++.... +.++. ...+..+...+...+++++|...+.+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 112346777778888888888888887776532 11111 23445555566677788887777766653
No 180
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.02 E-value=0.00029 Score=74.03 Aligned_cols=173 Identities=14% Similarity=0.111 Sum_probs=139.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 499 GSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGA----------VDKGLGLFEEMMRKGIKPSSISCNILINGLCRT 568 (681)
Q Consensus 499 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 568 (681)
...++|++.+++++..+ |-+..+|+.-..++.+.|+ +++++..++.+++...+ +..+|..-...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 34568899999999874 6677888887777777777 89999999999997654 788999999999999
Q ss_pred C--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-------
Q 040136 569 R--KANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMG-CIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKE------- 638 (681)
Q Consensus 569 g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------- 638 (681)
| ++++++++++++++.. +-|...|+.-..++.+.| .++++++.++++++.. .-|...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 9 6799999999999974 337888998888888899 8999999999999864 44678888888877663
Q ss_pred -------CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCccc
Q 040136 639 -------GLFDDAFLILHKGVANGFVPN-DATWYILVRNLVKEINME 677 (681)
Q Consensus 639 -------g~~~~A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~ 677 (681)
+.+++|++.+++++. +.|+ ...|.-+...+.+.|+.+
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCCCS
T ss_pred ccccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCCcc
Confidence 567999999999998 4454 566776666666666543
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.01 E-value=9.4e-06 Score=65.47 Aligned_cols=85 Identities=13% Similarity=0.055 Sum_probs=43.1
Q ss_pred cCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 040136 568 TRKANTALEFLRDMIHRG--LTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAF 645 (681)
Q Consensus 568 ~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 645 (681)
.|++++|+..|++.++.+ -+.+...+..+..++...|++++|+..|+++++.. +-+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 345555555555555432 01123445555555556666666666666665531 223445555555566666666666
Q ss_pred HHHHHHHH
Q 040136 646 LILHKGVA 653 (681)
Q Consensus 646 ~~~~~~~~ 653 (681)
..++++++
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665555
No 182
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.00 E-value=0.00031 Score=73.76 Aligned_cols=171 Identities=11% Similarity=0.035 Sum_probs=134.1
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--C
Q 040136 468 EALGLYQDMLLEGVTANTVTYNTLIHAFLRRGS----------LHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAG--A 535 (681)
Q Consensus 468 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~ 535 (681)
+|++.++++....+. +..+|+.--.++...|+ ++++++.++.+.+.. |-+..+|..-..++.+.| +
T Consensus 47 eal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 47 SVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccccc
Confidence 344444444443322 66777777677777777 899999999999874 678899999889999999 7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------
Q 040136 536 VDKGLGLFEEMMRKGIKPSSISCNILINGLCRTR-KANTALEFLRDMIHRGLTPDIVTYNSLINGLCKM----------- 603 (681)
Q Consensus 536 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------- 603 (681)
+++++..++++.+.... +...|+....++.+.| .++++++.++++++.. +-|...|+.....+.+.
T Consensus 125 ~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccccc
Confidence 79999999999998654 8899999998999999 8999999999999864 33778888877777663
Q ss_pred ---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 040136 604 ---GCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDD 643 (681)
Q Consensus 604 ---g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 643 (681)
+.++++++.+++++... +-|...|..+...+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 56799999999999852 3357788888888888777554
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.00 E-value=0.00017 Score=58.93 Aligned_cols=90 Identities=17% Similarity=0.096 Sum_probs=49.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHH
Q 040136 561 LINGLCRTRKANTALEFLRDMIHRGLTPDI---VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD----AVTYNTLIS 633 (681)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~ 633 (681)
+...+...|++++|.+.++++.+.. +.+. ..+..+..++...|++++|+..++++.+. .|+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHHH
Confidence 3445555666666666666655531 1111 34555555666666666666666666553 222 344555556
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 040136 634 WHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 634 ~~~~~g~~~~A~~~~~~~~~ 653 (681)
++...|++++|...++++++
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666665
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.00 E-value=3.1e-05 Score=79.80 Aligned_cols=118 Identities=12% Similarity=0.033 Sum_probs=66.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 040136 494 AFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANT 573 (681)
Q Consensus 494 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 573 (681)
.+.+.|++++|.+.+++.++.. +.+..++..+..+|.+.|++++|+..++++++... .+...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHH
Confidence 3455666666666666666552 44566666666666666666666666666666532 245566666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 040136 574 ALEFLRDMIHRGLTPDIVTYNSLING--LCKMGCIQEALNLFD 614 (681)
Q Consensus 574 A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 614 (681)
|++.+++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666666531 1122334344433 556666666666665
No 185
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.00 E-value=8.6e-05 Score=62.07 Aligned_cols=74 Identities=19% Similarity=0.091 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HHHH----HHHHHHHHhcCChhHHHHHHHHHHH-----CCC
Q 040136 592 TYNSLINGLCKMGCIQEALNLFDKLQAE-----GIYPD-AVTY----NTLISWHFKEGLFDDAFLILHKGVA-----NGF 656 (681)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~ 656 (681)
.|..+..++.+.|++++|+..+++.++. .+.|+ ...| .....++...|++++|+..|+++++ .|+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 7777777888888888888888888773 11665 4567 7888888888999999999888876 244
Q ss_pred CCCHHHHHH
Q 040136 657 VPNDATWYI 665 (681)
Q Consensus 657 ~~~~~~~~~ 665 (681)
.+.......
T Consensus 139 ~~~~~~~~~ 147 (159)
T 2hr2_A 139 TPGKERMME 147 (159)
T ss_dssp CTTHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444333
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.98 E-value=1.8e-05 Score=81.61 Aligned_cols=120 Identities=14% Similarity=0.073 Sum_probs=96.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040136 526 LIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGC 605 (681)
Q Consensus 526 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 605 (681)
+...+.+.|++++|+..|+++++... .+...+..+..+|.+.|++++|++.+++.++.. +.+...|..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 34456788999999999999998743 368899999999999999999999999999863 3367889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHH--HHhcCChhHHHHHHH
Q 040136 606 IQEALNLFDKLQAEGIYP-DAVTYNTLISW--HFKEGLFDDAFLILH 649 (681)
Q Consensus 606 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 649 (681)
+++|++.++++.+. .| +...+..+..+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999985 44 34456666665 888899999999998
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.97 E-value=9.5e-05 Score=63.53 Aligned_cols=68 Identities=12% Similarity=-0.026 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDA 625 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 625 (681)
...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..++...|++++|+..|++.++. .|+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 3566777777777888888888887777742 335667777777788888888888888887774 5553
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.92 E-value=0.0001 Score=73.02 Aligned_cols=89 Identities=12% Similarity=-0.016 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYP-DAVTYNTLIS 633 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 633 (681)
...|..+..+|.+.|++++|++.+++.++.. +.+...|..+..+|...|++++|+..|+++.+. .| +...+..+..
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~ 349 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 4566667777777777777777777777642 224566667777777777777777777777764 33 4555566666
Q ss_pred HHHhcCChhHHHH
Q 040136 634 WHFKEGLFDDAFL 646 (681)
Q Consensus 634 ~~~~~g~~~~A~~ 646 (681)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555543
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.91 E-value=0.00013 Score=72.27 Aligned_cols=124 Identities=10% Similarity=0.011 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 040136 486 VTYNTLIHAFLRRGSLHEAHKLVNDMLFR---------------GCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKG 550 (681)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 550 (681)
..+..+...+.+.|++++|++.|++.++. ..+.+..+|..+..+|.+.|++++|+..++++++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 45677788899999999999999998861 123456788889999999999999999999999864
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040136 551 IKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALN 611 (681)
Q Consensus 551 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 611 (681)
. .+...+..+..+|...|++++|++.|++.++.. +.+...+..+..++...++.+++.+
T Consensus 304 p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 P-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 367889999999999999999999999999852 2356777777888877777776654
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.91 E-value=2.9e-05 Score=62.51 Aligned_cols=84 Identities=14% Similarity=0.076 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040136 499 GSLHEAHKLVNDMLFRG--CPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALE 576 (681)
Q Consensus 499 g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 576 (681)
|++++|+..|++.++.+ -|.+..++..+..+|...|++++|+..|+++++.... +...+..+..++...|++++|++
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHH
Confidence 44444444444444432 1223334444444444444444444444444443221 33444444444444444444444
Q ss_pred HHHHHHH
Q 040136 577 FLRDMIH 583 (681)
Q Consensus 577 ~~~~~~~ 583 (681)
.+++.++
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.88 E-value=0.00054 Score=57.26 Aligned_cols=96 Identities=20% Similarity=0.103 Sum_probs=60.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC
Q 040136 524 NGLIKALCNAGAVDKGLGLFEEMMRKGIKP------SS-----ISCNILINGLCRTRKANTALEFLRDMIHR-----GLT 587 (681)
Q Consensus 524 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~ 587 (681)
......+.+.|++++|+..|+++++..... +. ..|..+..++.+.|++++|+..+++.++. .+.
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 334444555555555555555555532110 12 26777777777777777777777777762 114
Q ss_pred CC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 588 PD-IVTY----NSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 588 p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
|+ ...| .....++...|++++|+..|++.++.
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 54 3566 77778888888888888888888774
No 192
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.87 E-value=0.00047 Score=57.15 Aligned_cols=110 Identities=10% Similarity=-0.029 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 040136 535 AVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCK----MGCIQEAL 610 (681)
Q Consensus 535 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 610 (681)
++++|..+|++..+.| .++.. +...|...+.+++|++.|++..+.| +...+..|...|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3455555555555544 11211 4444444455555555555555542 34444555555554 45566666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 040136 611 NLFDKLQAEGIYPDAVTYNTLISWHFK----EGLFDDAFLILHKGVANG 655 (681)
Q Consensus 611 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g 655 (681)
..|++..+.| +...+..|...|.. .++.++|..++++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666665543 44455555555555 556666666666666554
No 193
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.87 E-value=0.0002 Score=73.45 Aligned_cols=131 Identities=6% Similarity=-0.011 Sum_probs=106.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLD---------------EITYNGLIKALCNAGAVDKGLGLFEEMMR 548 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 548 (681)
....|..+...|.+.|++++|+..|++.++.. +.+ ...|..+..+|.+.|++++|+..++++++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 44567788889999999999999999998863 333 57888999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHHH
Q 040136 549 KGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTP-DIVTYNSLINGLCKMGCIQEALN-LFDKLQA 618 (681)
Q Consensus 549 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~ 618 (681)
... .+...|..+..+|...|++++|+..|++.++. .| +...+..+..++.+.++.++|.+ .++.|..
T Consensus 346 ~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 346 LDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 753 37888999999999999999999999999985 34 45678888888888898887764 4555544
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.82 E-value=4.3e-05 Score=74.88 Aligned_cols=148 Identities=11% Similarity=0.033 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILIN 563 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 563 (681)
....+..+...+.+.|++++|...|++.+.. .|+... +...|+.+++...+. ...|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 3455666667777777777777777777665 222221 112223333322111 136778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHhcCCh
Q 040136 564 GLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISW-HFKEGLF 641 (681)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~ 641 (681)
+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|+++++. .|+ ...+..+... ....+..
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999988752 336778888999999999999999999998874 554 3455555555 2345667
Q ss_pred hHHHHHHHHHHH
Q 040136 642 DDAFLILHKGVA 653 (681)
Q Consensus 642 ~~A~~~~~~~~~ 653 (681)
+++...|++|..
T Consensus 316 ~~a~~~~~~~l~ 327 (338)
T 2if4_A 316 QKQKEMYKGIFK 327 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHHhhC
Confidence 788888888876
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.78 E-value=0.00064 Score=56.32 Aligned_cols=111 Identities=13% Similarity=0.002 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 040136 499 GSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCR----TRKANTA 574 (681)
Q Consensus 499 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 574 (681)
+++++|.+.|++..+.| .++.. |...|...+.+++|..+|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35677777777777776 33332 6666666667777888888877764 56777777777776 6788888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 040136 575 LEFLRDMIHRGLTPDIVTYNSLINGLCK----MGCIQEALNLFDKLQAEG 620 (681)
Q Consensus 575 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 620 (681)
++.|++..+.| +...+..|...|.. .++.++|+..|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888877753 55666677777776 778888888888887765
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.73 E-value=0.00019 Score=73.45 Aligned_cols=132 Identities=9% Similarity=0.027 Sum_probs=87.9
Q ss_pred HHHhcCChhHHHHHHHHHHhc-----C--CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHH
Q 040136 401 GLCKQRRFGSALELVNAMAVK-----G--CEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLY 473 (681)
Q Consensus 401 ~~~~~~~~~~A~~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~ 473 (681)
.+...|++++|..++++.++. | .+....+++.|..+|...|++++|..++++.++ ++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~----------------i~ 381 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD----------------GY 381 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------HH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----------------HH
Confidence 456788999999888887653 1 111346789999999999999999998876544 34
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040136 474 QDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFR-----GC--PLDEITYNGLIKALCNAGAVDKGLGLFEEM 546 (681)
Q Consensus 474 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 546 (681)
.+......+-...+++.|...|...|++++|..++++..+. |. |....+.+.+..++...+.+++|+.+|..+
T Consensus 382 ~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 382 MKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433333334466778888888888888888887776542 21 112233444555566666677777777766
Q ss_pred HH
Q 040136 547 MR 548 (681)
Q Consensus 547 ~~ 548 (681)
.+
T Consensus 462 ~~ 463 (490)
T 3n71_A 462 RE 463 (490)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.71 E-value=0.00024 Score=72.70 Aligned_cols=125 Identities=10% Similarity=-0.007 Sum_probs=78.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhC-----C--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCC-CC-HHHHH
Q 040136 494 AFLRRGSLHEAHKLVNDMLFR-----G--CPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK-----GIK-PS-SISCN 559 (681)
Q Consensus 494 ~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-p~-~~~~~ 559 (681)
.+...|++++|+.++++.++. | .+....+++.|..+|...|++++|+.+++++++. |.. |+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355778888888888776543 1 1123456777777888888888888887776642 211 12 25567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 560 ILINGLCRTRKANTALEFLRDMIHR-----GL-TPD-IVTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 560 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
.|...|...|++++|+.++++.++- |. .|+ ..+.+.+.+++...+.+++|+.++.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777776541 21 122 23344555666667777777777777665
No 198
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.69 E-value=0.00011 Score=72.01 Aligned_cols=146 Identities=13% Similarity=0.096 Sum_probs=80.2
Q ss_pred HHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 040136 452 EMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALC 531 (681)
Q Consensus 452 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 531 (681)
.....|......++.++|...|.+..... |+... +...++.+++...+. ...|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 33444445556788999999999887653 22221 223344444433321 136778888899
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHhcCCHHHH
Q 040136 532 NAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPD-IVTYNSLING-LCKMGCIQEA 609 (681)
Q Consensus 532 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~A 609 (681)
+.|++++|+..++++++... .+...|..+..+|...|++++|+..|++.++. .|+ ...+..+... ....+..+++
T Consensus 242 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988643 36788889999999999999999999998764 343 4445555544 2345667788
Q ss_pred HHHHHHHHHC
Q 040136 610 LNLFDKLQAE 619 (681)
Q Consensus 610 ~~~~~~~~~~ 619 (681)
...|.+|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888888764
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.69 E-value=5.1e-05 Score=60.17 Aligned_cols=92 Identities=13% Similarity=0.023 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HHH
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-------AVT 627 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~ 627 (681)
...+..+...+...|++++|++.+++.++.. +.+...|..+..++...|++++|+..++++++. .|+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHH
Confidence 3445555666666666666666666666541 224555666666666666666666666666653 343 334
Q ss_pred HHHHHHHHHhcCChhHHHHHHH
Q 040136 628 YNTLISWHFKEGLFDDAFLILH 649 (681)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~ 649 (681)
+..+..++...|++++|...++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHH
Confidence 4455555555555555544433
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.62 E-value=0.00014 Score=60.64 Aligned_cols=85 Identities=8% Similarity=-0.050 Sum_probs=45.4
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 040136 531 CNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKA----------NTALEFLRDMIHRGLTP-DIVTYNSLING 599 (681)
Q Consensus 531 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 599 (681)
.+.+.+++|+..++..++.... +...|..+..++...+++ ++|+..|++.++. .| +...|..+..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHH
Confidence 3445566666666666665422 556666666666665543 3555555555553 22 33445555555
Q ss_pred HHhcC-----------CHHHHHHHHHHHHH
Q 040136 600 LCKMG-----------CIQEALNLFDKLQA 618 (681)
Q Consensus 600 ~~~~g-----------~~~~A~~~~~~~~~ 618 (681)
|...| ++++|++.|+++++
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 55442 45555555555554
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.0005 Score=54.24 Aligned_cols=86 Identities=19% Similarity=0.212 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-------HH
Q 040136 589 DIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPN-------DA 661 (681)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-------~~ 661 (681)
+...+..+...+...|++++|+..++++++.. +.+...+..+..++.+.|++++|.+.++++++ +.|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHHH
Confidence 45678888999999999999999999999862 44678899999999999999999999999997 4565 45
Q ss_pred HHHHHHHHHHhcCccc
Q 040136 662 TWYILVRNLVKEINME 677 (681)
Q Consensus 662 ~~~~ll~~~~~~g~~~ 677 (681)
.+..+..++...|+.+
T Consensus 80 ~~~~~~~~~~~~~~~~ 95 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQ 95 (111)
T ss_dssp HHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhHh
Confidence 5666666666666543
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.53 E-value=0.00031 Score=56.07 Aligned_cols=78 Identities=18% Similarity=0.099 Sum_probs=40.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 539 GLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 539 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
|+..|+++++... .+...+..+...|...|++++|+..+++.++.. +.+...|..+..++...|++++|+..|+++.+
T Consensus 4 a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555555422 244555555555555555555555555555531 22344555555555555555555555555554
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.44 E-value=0.00038 Score=58.05 Aligned_cols=98 Identities=15% Similarity=0.142 Sum_probs=67.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 496 LRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGA----------VDKGLGLFEEMMRKGIKPSSISCNILINGL 565 (681)
Q Consensus 496 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 565 (681)
.+.+.+++|.+.++...+.. |.+...|..+..++...++ +++|+..|+++++.... +...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 34456677777777777663 5567777767777666655 35888888888876433 567777788888
Q ss_pred HhcC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 566 CRTR-----------KANTALEFLRDMIHRGLTPDIVTYNSLI 597 (681)
Q Consensus 566 ~~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 597 (681)
...| ++++|++.|++.++ +.|+...|...+
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al 131 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 7664 78888888888887 467655554433
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.41 E-value=0.00086 Score=53.41 Aligned_cols=79 Identities=14% Similarity=0.049 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 503 EAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMI 582 (681)
Q Consensus 503 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 582 (681)
+|++.+++..+.. |.+...+..+...|...|++++|+..|+++++... .+...+..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3555666666553 45666666777777777777777777777766532 245666667777777777777777777666
Q ss_pred H
Q 040136 583 H 583 (681)
Q Consensus 583 ~ 583 (681)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.39 E-value=0.0017 Score=48.74 Aligned_cols=62 Identities=23% Similarity=0.290 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 591 VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
..+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|...++++++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344444455555555555555555555431 22344455555555555555555555555554
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.38 E-value=0.002 Score=48.43 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 556 ISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWH 635 (681)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 635 (681)
..+..+...+...|++++|++.+++..+.. +.+...+..+..++...|++++|+..+++..+.. +.+...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 344445555555555555555555555431 2234455555555555666666666666555531 22334444444444
Q ss_pred H
Q 040136 636 F 636 (681)
Q Consensus 636 ~ 636 (681)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.26 E-value=0.0058 Score=58.73 Aligned_cols=143 Identities=12% Similarity=0.044 Sum_probs=88.5
Q ss_pred CCCHHHHHHHHHHHH--HcC---CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh---cC-C----HHHHHHHHHHHH
Q 040136 517 PLDEITYNGLIKALC--NAG---AVDKGLGLFEEMMRKGIKPS-SISCNILINGLCR---TR-K----ANTALEFLRDMI 582 (681)
Q Consensus 517 ~~~~~~~~~l~~~~~--~~g---~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g-~----~~~A~~~~~~~~ 582 (681)
|.+...|...+.+.. ..+ +..+|+.+|+++++. .|+ ...+..+..+|.. .+ . .......++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 455666666655433 222 246677777777775 333 2333333333321 01 1 111111111111
Q ss_pred H-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 040136 583 H-RGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDA 661 (681)
Q Consensus 583 ~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 661 (681)
. ...+.+..+|..+...+...|++++|+..+++++.. .|+...|..+...+.-.|++++|.+.++++.. +.|...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcC
Confidence 1 112456777877777777779999999999999986 47877887888888999999999999999987 678887
Q ss_pred HHHH
Q 040136 662 TWYI 665 (681)
Q Consensus 662 ~~~~ 665 (681)
+|..
T Consensus 345 t~~~ 348 (372)
T 3ly7_A 345 TLYW 348 (372)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 7644
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.18 E-value=0.0019 Score=49.82 Aligned_cols=63 Identities=13% Similarity=0.184 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
...+..+..+|...|++++|++.|++.++.. +.+...|..+..+|...|++++|++.+++.++
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444555555555555555555555555431 11334455555555555555555555555543
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.17 E-value=0.0018 Score=49.94 Aligned_cols=65 Identities=18% Similarity=0.161 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 518 LDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIH 583 (681)
Q Consensus 518 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 583 (681)
.+...+..+..+|...|++++|+..|+++++.... +...|..+..+|...|++++|++.+++.++
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555555556666666666666666666554322 344555566666666666666666665543
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.03 E-value=0.012 Score=56.69 Aligned_cols=144 Identities=13% Similarity=0.041 Sum_probs=100.6
Q ss_pred CCCHHHHHHHHHHHH--hcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cC--CHHH---HHHHHHHHHH
Q 040136 482 TANTVTYNTLIHAFL--RRGS---LHEAHKLVNDMLFRGCPLDEITYNGLIKALCN---AG--AVDK---GLGLFEEMMR 548 (681)
Q Consensus 482 ~~~~~~~~~li~~~~--~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g--~~~~---A~~~~~~~~~ 548 (681)
+.+...|...+.+.. ..++ ..+|..+|++.++.. |-....+..+..+|.. .+ .... ....+.....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 456777777776543 3333 578999999999873 5556666665555531 11 1111 1112222111
Q ss_pred -CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 040136 549 -KGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVT 627 (681)
Q Consensus 549 -~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 627 (681)
.....+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.++++.. +.|...+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANT 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcCh
Confidence 1224577888888888888899999999999999964 7888888889999999999999999999998 4788776
Q ss_pred HHH
Q 040136 628 YNT 630 (681)
Q Consensus 628 ~~~ 630 (681)
|..
T Consensus 346 ~~~ 348 (372)
T 3ly7_A 346 LYW 348 (372)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.81 E-value=0.0034 Score=63.01 Aligned_cols=63 Identities=14% Similarity=-0.070 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 591 VTYNSLINGLCKMGCIQEALNLFDKLQAE-----G-IYPD-AVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
.+++.|..+|...|++++|+.+++++++. | -.|+ ..+++.|...|...|++++|..+++++++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 34444555555555555555555544432 1 1222 23445555555555555555555555543
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.77 E-value=0.0076 Score=60.58 Aligned_cols=89 Identities=17% Similarity=0.187 Sum_probs=52.9
Q ss_pred HHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHH
Q 040136 565 LCRTRKANTALEFLRDMIHR---GLTPD----IVTYNSLINGLCKMGCIQEALNLFDKLQAE-----G-IYPD-AVTYNT 630 (681)
Q Consensus 565 ~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~-~~~~~~ 630 (681)
+...|++++|+.++++.++. -+.|+ ..+++.++.+|...|++++|+.+++++++. | -.|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44556666666666666542 11121 245666666777777777777776666543 1 1222 335666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 040136 631 LISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
|...|...|++++|..+++++++
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 77777777777777777776664
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.71 E-value=0.02 Score=47.11 Aligned_cols=65 Identities=12% Similarity=0.064 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 588 PDIVTYNSLINGLCKMG---CIQEALNLFDKLQAEGIYP--DAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 588 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
++..+...+.+++++++ +.++++.+++...+.+ .| +...+..|.-+|.+.|++++|+++++.+++
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444444445555544 3345555555554432 13 122333344444555555555555555554
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.62 E-value=0.0053 Score=61.63 Aligned_cols=85 Identities=12% Similarity=-0.024 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHH
Q 040136 534 GAVDKGLGLFEEMMRK---GIKPS----SISCNILINGLCRTRKANTALEFLRDMIHR-----G-LTPD-IVTYNSLING 599 (681)
Q Consensus 534 g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~-~~~~~~l~~~ 599 (681)
|++++|+.++++.++. -+.|+ ..+++.++.+|...|++++|+.++++.++- | -.|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555555555554432 11111 245566666666666666666666665531 1 1233 2456677777
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 040136 600 LCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~ 618 (681)
|...|++++|+.+++++.+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 7777777777777776655
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.43 E-value=0.008 Score=45.93 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=28.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 563 NGLCRTRKANTALEFLRDMIHRGLTPDIV-TYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
..+...|++++|++.+++.++.. +.+.. .+..+..++...|++++|+..|+++++
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445555555555555555431 11334 455555555555555555555555555
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.42 E-value=0.011 Score=45.22 Aligned_cols=57 Identities=18% Similarity=0.328 Sum_probs=33.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 040136 492 IHAFLRRGSLHEAHKLVNDMLFRGCPLDEI-TYNGLIKALCNAGAVDKGLGLFEEMMRK 549 (681)
Q Consensus 492 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (681)
...+.+.|++++|.+.++++.+.. +.+.. .+..+..+|...|++++|...|+++++.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 334555666666666666665542 33445 5566666666666666666666666654
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.41 E-value=0.016 Score=58.30 Aligned_cols=91 Identities=11% Similarity=0.031 Sum_probs=51.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCC-HHHH
Q 040136 493 HAFLRRGSLHEAHKLVNDMLFRG---CPL----DEITYNGLIKALCNAGAVDKGLGLFEEMMRK-----GI-KPS-SISC 558 (681)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~-~~~~ 558 (681)
..+.+.|++++|+.++++.++.. ..+ ...+++.|+.+|...|++++|+.++++++.- |. .|+ ..++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33556677777777777766431 111 2345666666677777777777776666542 21 111 2445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 559 NILINGLCRTRKANTALEFLRDMIH 583 (681)
Q Consensus 559 ~~l~~~~~~~g~~~~A~~~~~~~~~ 583 (681)
+.|...|...|++++|+.++++.++
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5666666666666666666665543
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.39 E-value=0.13 Score=57.03 Aligned_cols=161 Identities=17% Similarity=0.153 Sum_probs=101.5
Q ss_pred HHhCCChHHHHH-HHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChh
Q 040136 159 YGRGGVPGQATR-LLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVD 237 (681)
Q Consensus 159 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 237 (681)
....+++++|.+ ++..+. +......++..+.+.|..++|+++.++- ..-.......|+++
T Consensus 609 ~~~~~~~~~a~~~~l~~i~-------~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE-------GKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLT 669 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC-------CHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHhcCC-------chHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHH
Confidence 345677777765 332111 0222266666677777777777655211 11133345678888
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 238 SACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRML 317 (681)
Q Consensus 238 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 317 (681)
+|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++.+...
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 888875443 3567888888888889999999888887652 3345555566777777666666655
Q ss_pred HCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHH
Q 040136 318 VRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKA 377 (681)
Q Consensus 318 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 377 (681)
..| -++....+|.+.|++++|.+++ .+.+++++|..
T Consensus 735 ~~~------~~~~A~~~~~~~g~~~~a~~~~------------------~~~~~~~~A~~ 770 (814)
T 3mkq_A 735 TTG------KFNLAFNAYWIAGDIQGAKDLL------------------IKSQRFSEAAF 770 (814)
T ss_dssp HTT------CHHHHHHHHHHHTCHHHHHHHH------------------HHTTCHHHHHH
T ss_pred HcC------chHHHHHHHHHcCCHHHHHHHH------------------HHcCChHHHHH
Confidence 543 2344555677778888887754 44667777776
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.31 E-value=0.03 Score=42.11 Aligned_cols=65 Identities=12% Similarity=0.051 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040136 588 PDIVTYNSLINGLCKMGC---IQEALNLFDKLQAEGIYP-DAVTYNTLISWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 588 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
.|...+..+..++...++ .++|..++++.++. .| +......+...+.+.|++++|...|+++++.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455556666666554433 56677777776664 33 3556666666667777777777777777663
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.13 E-value=0.097 Score=58.02 Aligned_cols=97 Identities=14% Similarity=0.056 Sum_probs=55.1
Q ss_pred HhcCCHHHHHH-HHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 040136 336 CRTGRVDEARA-LLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALEL 414 (681)
Q Consensus 336 ~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~ 414 (681)
...+++++|.+ ++..++. ......++..+.+.|..++|++ +.+ +.. .-.......|+++.|.++
T Consensus 610 ~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~-~~~---------~~~---~~f~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALN-ISP---------DQD---QKFELALKVGQLTLARDL 674 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHH-HCC---------CHH---HHHHHHHHHTCHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHhee-cCC---------Ccc---hheehhhhcCCHHHHHHH
Confidence 34566666655 4433220 1122555556666677777666 321 111 112334566777777776
Q ss_pred HHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 040136 415 VNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEM 453 (681)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 453 (681)
.+.+ .+...|..+...+.+.++++.|.+.|..+
T Consensus 675 ~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 675 LTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5332 35567777888888888888777777654
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.09 E-value=0.077 Score=43.64 Aligned_cols=85 Identities=16% Similarity=0.126 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 040136 536 VDKGLGLFEEMMRKGIKPSSISCNILINGLCRTR---KANTALEFLRDMIHRGLTP--DIVTYNSLINGLCKMGCIQEAL 610 (681)
Q Consensus 536 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 610 (681)
...+++.|.+....|. ++..+...+..++++.+ +.++++.++++..+.+ .| +...+-.|.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455566666655554 56677777777777777 5557777777777653 23 2344445566677778888888
Q ss_pred HHHHHHHHCCCCCC
Q 040136 611 NLFDKLQAEGIYPD 624 (681)
Q Consensus 611 ~~~~~~~~~~~~p~ 624 (681)
++++.+++ +.|+
T Consensus 92 ~y~~~lL~--ieP~ 103 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHHH--HCTT
T ss_pred HHHHHHHh--cCCC
Confidence 88888877 4664
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.07 E-value=0.066 Score=40.19 Aligned_cols=66 Identities=9% Similarity=0.054 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 518 LDEITYNGLIKALCNAGA---VDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHR 584 (681)
Q Consensus 518 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 584 (681)
.++..+..+..++...++ .++|..+++++++.... +......+...+...|++++|+..|+++++.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344445555555443333 45555555555554322 3444555555555555555555555555553
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.82 E-value=0.12 Score=47.46 Aligned_cols=94 Identities=18% Similarity=0.121 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCH
Q 040136 501 LHEAHKLVNDMLFRGCPL---DEITYNGLIKALCNA-----GAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRT-RKA 571 (681)
Q Consensus 501 ~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~ 571 (681)
...|...+++.++. .| +...|..+...|.+. |+.++|.+.|+++++.+..-+..++....+.++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 56777778887776 33 366788888888884 89999999999999864432477777888888884 889
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHHH
Q 040136 572 NTALEFLRDMIHRGLT--PDIVTYNSL 596 (681)
Q Consensus 572 ~~A~~~~~~~~~~~~~--p~~~~~~~l 596 (681)
++|.+.+++.+..... |+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9999999999886555 555444443
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.64 E-value=0.11 Score=39.98 Aligned_cols=69 Identities=14% Similarity=0.134 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040136 554 SSISCNILINGLCRTRKANTALEFLRDMIHRG------LTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD 624 (681)
Q Consensus 554 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 624 (681)
+..-+..++..+...|+++.|...++...+.. -.+...++..|..++.+.|++++|+.+++++.+. .|+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~ 78 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPE 78 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCC
Confidence 44455566777777777777777777766531 1223456666677777777777777777777663 454
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.61 E-value=0.12 Score=39.83 Aligned_cols=65 Identities=11% Similarity=0.025 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 519 DEITYNGLIKALCNAGAVDKGLGLFEEMMRKG------IKPSSISCNILINGLCRTRKANTALEFLRDMIH 583 (681)
Q Consensus 519 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 583 (681)
+..-+..|+..+.+.|+++.|..+|+.+.+.- -.+....+..+..++.+.|+++.|+..++++.+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44455566666777777777777777666531 112345666677777777777777777777765
No 226
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.61 E-value=3.4 Score=45.14 Aligned_cols=177 Identities=12% Similarity=0.023 Sum_probs=98.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040136 493 HAFLRRGSLHEAHKLVNDMLFRGCPLDEITY--NGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRK 570 (681)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 570 (681)
-++...|+.+.+..+++.+.... .|....- .++.-+|+..|+......++..+.+. ...++.....+.-++...|+
T Consensus 532 LGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~ 609 (963)
T 4ady_A 532 LALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRD 609 (963)
T ss_dssp HHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSS
T ss_pred HHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCC
Confidence 34446788888888888877642 2222211 13344566778877777788888764 22234434444445556677
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--C-------C
Q 040136 571 ANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCI-QEALNLFDKLQAEGIYPDAVTYNTLISWHFKE--G-------L 640 (681)
Q Consensus 571 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g-------~ 640 (681)
.+.+.++++.+.+.+ .|....-..+.-+....|.. .+|+..+..+.. .+|..+-...+.++... | +
T Consensus 610 ~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~r 685 (963)
T 4ady_A 610 YTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQ 685 (963)
T ss_dssp CSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTT
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchH
Confidence 777777777666542 34444333444444445543 678888888875 45555444444444333 2 3
Q ss_pred hhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCc
Q 040136 641 FDDAFLILHKGVAN-GFVPNDATWYILVRNLVKEIN 675 (681)
Q Consensus 641 ~~~A~~~~~~~~~~-g~~~~~~~~~~ll~~~~~~g~ 675 (681)
....++.+...... .-.++...-..+..++...|.
T Consensus 686 va~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 686 VADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 33444444444432 223445555667777776664
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.57 E-value=0.65 Score=36.70 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIK 552 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 552 (681)
+.......++.....|.-++-.+++.++... .+|++.....+..+|.+.|+..+|.+++.++-+.|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4455566667777778888888888776543 4677777777888888888888888888888777754
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.32 E-value=0.5 Score=39.88 Aligned_cols=130 Identities=17% Similarity=0.128 Sum_probs=91.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 040136 492 IHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKA 571 (681)
Q Consensus 492 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 571 (681)
.....+.|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+... +..+.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34456889999999998765 4788999999999999999999999988753 23444456668888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 040136 572 NTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKG 651 (681)
Q Consensus 572 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 651 (681)
+.-.++-+.....| -++.-..++...|+++++++++.+.-+ .|... -.....|..+.|.++.+++
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 77766666655543 245556667788999999999865432 22211 1122356777888887766
No 229
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.18 E-value=0.00055 Score=66.97 Aligned_cols=224 Identities=16% Similarity=0.118 Sum_probs=145.5
Q ss_pred HHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 040136 185 FRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHA 264 (681)
Q Consensus 185 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 264 (681)
+..|..+..+....++..+|++.| ++. -|...|..++.+..+.|.+++-.+.+....+.. .++..=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 456778888888888888887666 333 256678888888888888888888877766553 334455678888
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHH
Q 040136 265 LSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEA 344 (681)
Q Consensus 265 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 344 (681)
|++.++..+..+++. .|+..-...+.+-|...|.++.|.-+|..+. -|.-|..++.+.|++..|
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHH
Confidence 888888765444332 4666666677777777777777766665432 223344445555665555
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 040136 345 RALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCE 424 (681)
Q Consensus 345 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~ 424 (681)
.+.-.+. .++.+|..+-.+|...+.+.-|.-.-...+....- ...++..|...|.+++-+.+++.-.... .
T Consensus 190 VdaArKA--ns~ktWKeV~~ACvd~~EfrLAqicGLniIvhade------L~elv~~YE~~G~f~ELIsLlEaglglE-r 260 (624)
T 3lvg_A 190 VDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE------LEELINYYQDRGYFEELITMLEAALGLE-R 260 (624)
T ss_dssp TTTTTTC--CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC------CSGGGSSSSTTCCCTTSTTTHHHHTTST-T
T ss_pred HHHHHhc--CChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH------HHHHHHHHHhCCCHHHHHHHHHHHhCCC-c
Confidence 4432221 56677888888888888777665522333332221 2235666788888888888888776431 3
Q ss_pred cCHhhHHHHHHHHHhcC
Q 040136 425 PNIVTYTILVDGFCKEG 441 (681)
Q Consensus 425 ~~~~~~~~ll~~~~~~g 441 (681)
....+|+.|.-.|++..
T Consensus 261 AHmGmFTELaILYsKY~ 277 (624)
T 3lvg_A 261 AHMGMFTELAILYSKFK 277 (624)
T ss_dssp CCHHHHHHHHHHHHSSC
T ss_pred hhHHHHHHHHHHHHhcC
Confidence 45677888888887763
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.16 E-value=0.23 Score=39.20 Aligned_cols=65 Identities=11% Similarity=0.062 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC-C-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 588 PDIVTYNSLINGLCKMGCIQE---ALNLFDKLQAEGIYP-D-AVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 588 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
++..+-..+.+++.++.+... ++.+++.+...+ .| + ....-.|.-++.+.|++++|+++++.+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444445555555444333 555555554432 12 1 12223344455555555555555555555
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.12 E-value=1.3 Score=37.39 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVND 510 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~ 510 (681)
+...|..|.......|+++-|.+.|..
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 444555555555555555555555544
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.07 E-value=0.13 Score=47.32 Aligned_cols=80 Identities=15% Similarity=0.109 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHh-cC
Q 040136 536 VDKGLGLFEEMMRKGIKPS---SISCNILINGLCRT-----RKANTALEFLRDMIHRGLTP--DIVTYNSLINGLCK-MG 604 (681)
Q Consensus 536 ~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~-~g 604 (681)
...|...++++++. .|+ -..|..+...|... |+.++|.+.|++.++. .| +..++....+.++. .|
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcC
Confidence 45566666666664 344 34566666666663 6777777777777663 34 24555556666665 36
Q ss_pred CHHHHHHHHHHHHHC
Q 040136 605 CIQEALNLFDKLQAE 619 (681)
Q Consensus 605 ~~~~A~~~~~~~~~~ 619 (681)
+.++|.+.+++.+..
T Consensus 255 d~~~a~~~L~kAL~a 269 (301)
T 3u64_A 255 NRAGFDEALDRALAI 269 (301)
T ss_dssp CHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHcC
Confidence 677777777777664
No 233
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.05 E-value=0.00021 Score=69.79 Aligned_cols=221 Identities=12% Similarity=0.041 Sum_probs=115.2
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHH
Q 040136 113 TFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVL 192 (681)
Q Consensus 113 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll 192 (681)
.+.+|+.+..+....+...+|.+-| ++.+ +++.|..++.+..+.|.+++-+..+....+. ..++..=+.++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy---IkA~---Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi 123 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY---IKAD---DPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELI 123 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS---CCCS---CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHH---HhCC---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHH
Confidence 4445666666666666555544322 2222 4455666666666666666666666554421 22333335666
Q ss_pred HHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 040136 193 DVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVS 272 (681)
Q Consensus 193 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 272 (681)
-+|++.|+..+-.+++ . .||..-...+..-|...|.++.|.-+|..+.. |..|...+.+.|++.
T Consensus 124 ~ayAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq 187 (624)
T 3lvg_A 124 FALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQ 187 (624)
T ss_dssp HHHHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGG
T ss_pred HHHHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHH
Confidence 6666666655433322 1 24555555566666666666666655554432 222333444555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcC
Q 040136 273 EALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIP 352 (681)
Q Consensus 273 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 352 (681)
.|.+.-++ ..++.||..+-.+|...+.+..|.-+--.++-..- -...++..|-..|-+++-+.+++.-.
T Consensus 188 ~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvhad-----eL~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 188 AAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD-----ELEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp SSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS-----CCSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred HHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccHH-----HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 55443322 23556677777777777766666554444432211 11224445566666666666665543
Q ss_pred C---CChHHHHHHHHHHHhc
Q 040136 353 S---ANVVLLNTVINGYVIS 369 (681)
Q Consensus 353 ~---~~~~~~~~l~~~~~~~ 369 (681)
. .....|+.|.-.|.+-
T Consensus 257 glErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 257 GLERAHMGMFTELAILYSKF 276 (624)
T ss_dssp TSTTCCHHHHHHHHHHHHSS
T ss_pred CCCchhHHHHHHHHHHHHhc
Confidence 3 4445555555555544
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.67 E-value=0.2 Score=39.51 Aligned_cols=89 Identities=18% Similarity=0.132 Sum_probs=60.6
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCH
Q 040136 532 NAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANT---ALEFLRDMIHRGLTP--DIVTYNSLINGLCKMGCI 606 (681)
Q Consensus 532 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~ 606 (681)
.......+.+.|......|. ++..+-..+..++.+..+... ++.+++++...+ .| .....-.|.-++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhH
Confidence 33445566666666666554 677777777888888876655 888888877653 23 223344556678888888
Q ss_pred HHHHHHHHHHHHCCCCCC
Q 040136 607 QEALNLFDKLQAEGIYPD 624 (681)
Q Consensus 607 ~~A~~~~~~~~~~~~~p~ 624 (681)
++|.++++.+++. .|+
T Consensus 91 ~~A~~~~~~lL~~--eP~ 106 (126)
T 1nzn_A 91 EKALKYVRGLLQT--EPQ 106 (126)
T ss_dssp HHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHHHHh--CCC
Confidence 8888888888884 665
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.66 E-value=0.54 Score=38.09 Aligned_cols=66 Identities=21% Similarity=0.216 Sum_probs=37.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 603 MGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNL 670 (681)
Q Consensus 603 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~ 670 (681)
.+|.++|.++|+.+++.+-.- ..+|......-.+.|+++.|.+++.+.+..+.. +.......++.+
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~nl 138 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALRNL 138 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHHhh
Confidence 356666677766665542122 555666666666677777777777777664422 344444444444
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.57 E-value=0.66 Score=37.62 Aligned_cols=102 Identities=13% Similarity=0.109 Sum_probs=55.3
Q ss_pred CCCHHhHHHHHHHHHhcCCc------CcHHHHHHHHHHCCCCCChh-hHHHHHHH------HHhcCChhHHHHHHHHHHh
Q 040136 182 QPTFRSYNVVLDVLVAGNCH------KVAPNLFYDMLSKGISPTVY-TFGVVMKA------LCMVNEVDSACSLLRDMTK 248 (681)
Q Consensus 182 ~~~~~~~~~ll~~~~~~~~~------~~A~~~~~~m~~~~~~p~~~-~~~~ll~~------~~~~g~~~~A~~~~~~~~~ 248 (681)
+-|..+|-..+..+-+.|++ ++.+++|++.... ++|+.. .+...+.. +...+++++|.++|+.+..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44555666666666655666 5555666665553 344321 11111111 1223667777777777655
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 040136 249 HGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMG 285 (681)
Q Consensus 249 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 285 (681)
.+ +-=...|......-.++|++..|.+++......+
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 42 2225555555555666777777777777776665
No 237
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.40 E-value=7.2 Score=42.64 Aligned_cols=391 Identities=12% Similarity=0.050 Sum_probs=190.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCC---c
Q 040136 257 VYQTLIHALSKSNRVSEALMLLEEMILMGCTSDV-QTFNDVIHGLCKVNRIHEAAKLVDRMLVRG-------FTPD---D 325 (681)
Q Consensus 257 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-------~~~~---~ 325 (681)
-|..+++++.+.++.+.+.++|.++.+. .|. ..|. +.-.+.+.+.-.--.++.+.+.... +--+ .
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~~~---~d~l~ayQ-iAFdL~~~~~Q~fL~~v~~~l~~~e~~~kL~~ILsg~~~~ 307 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLKEE---NDEGLSAQ-IAFDLVSSASQQLLEILVTELTAQGYDPALLNILSGLPTC 307 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHTT---CCHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHTTCCHHHHHHTTSHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhc---ccHHHHHH-HHHHHhcccchHHHHHHHHhccccchhHHHHHHhCCCChH
Confidence 4677788888899999999999988742 232 3333 2222333333222222222221110 0001 1
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHhhcCC-CChH--HHHHHHHHHHhcCCHHHHH-HHHHHHHHhCCCCCCHHHHHHH-HH
Q 040136 326 ITYGVLMHGLCRTGRVDEARALLNKIPS-ANVV--LLNTVINGYVISGRFDEAK-AIFYDSMLSVGCIPDVFTFNIL-IH 400 (681)
Q Consensus 326 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~--~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~p~~~~~~~l-l~ 400 (681)
..|..++.-. +.-+...-..+ +...+ .+.. +-.++..+++..|-..+.+ ....+++.+. .+-.-+.++ .-
T Consensus 308 ~Lyl~FL~~~-n~~d~~~l~~~-K~~ld~r~s~~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~---~~~~k~sA~aSL 382 (963)
T 4ady_A 308 DYYNTFLLNN-KNIDIGLLNKS-KSSLDGKFSLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKA---QNWAKFTATASL 382 (963)
T ss_dssp HHHHHHHHHH-CCCCHHHHHHH-HHHSCTTSHHHHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHC---CTHHHHHHHHHH
T ss_pred HHHHHHHHhc-cccchhhHHHH-HhhhcchhhHHHHHHHHHHHHHhCCCCcchhhhcchhhhhcc---chHHHHHHHHHh
Confidence 1222222110 11122211121 22111 2221 2334566677666544331 1011222221 122122222 23
Q ss_pred HHHhcCChhHHHHHHHHHHhcC--CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC---c-----------
Q 040136 401 GLCKQRRFGSALELVNAMAVKG--CEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLS--LN---T----------- 462 (681)
Q Consensus 401 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~---~----------- 462 (681)
+....|+.++++.++......+ -.+.+..-..+.-+....|..+++..++...+...-. -. .
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4566788888877776655421 0112223333334455566656677766665543210 00 0
Q ss_pred ----cccHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 040136 463 ----GDRIEEALGLYQDMLLEGVTANT--VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAV 536 (681)
Q Consensus 463 ----~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 536 (681)
...-+++.+.+..+....-. .. ..-.++...+.-.|+.+....++..+.+.. ..+..-...+.-++...|+.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 11224455555555543211 11 111233344556778777788887776542 22222223333344567888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040136 537 DKGLGLFEEMMRKGIKPSSISCN---ILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLF 613 (681)
Q Consensus 537 ~~A~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 613 (681)
+.+..+.+.+... ..| ..-|. .+.-+|+..|+.....++++.+.+. ...+......+.-++...|+.+.+.+++
T Consensus 541 e~~~~li~~L~~~-~dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 541 ELADDLITKMLAS-DES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGHHHHHHHHHC-SCH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHHHhC-CCH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 8888888887764 122 22222 3455677888887777788888864 2223333333333455567777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHH
Q 040136 614 DKLQAEGIYPDAVTYNTLISWHFKEGLF-DDAFLILHKGVANGFVPNDATWYI 665 (681)
Q Consensus 614 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~~~~~~~~~ 665 (681)
+.+.+.+ .|...--..+.-+....|.. .+|...+..+.. .+|..+-..
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~ 666 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQA 666 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHH
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHH
Confidence 7666643 44444333444444555544 578888888874 455554433
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.28 E-value=2.5 Score=33.51 Aligned_cols=68 Identities=13% Similarity=-0.038 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 040136 589 DIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFV 657 (681)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 657 (681)
+...++.-+..+..+|.-+.-.++...+... .+|+......+..+|.+.|+..+|.++++++-++|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4445666778888889988888888886543 4788888889999999999999999999999999864
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.98 E-value=0.56 Score=37.16 Aligned_cols=77 Identities=16% Similarity=0.057 Sum_probs=50.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 040136 586 LTPDIVTYNSLINGLCKMGCI---QEALNLFDKLQAEGIYP-D-AVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPND 660 (681)
Q Consensus 586 ~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 660 (681)
-.|+..+--.+.+++.++.+. .+++.+++.+.+.+ | . ...+-.|.-++.+.|++++|+++.+.+++ +.|+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 445666666677777766643 45777777777653 3 2 33455566678888888888888888886 56665
Q ss_pred HHHHHH
Q 040136 661 ATWYIL 666 (681)
Q Consensus 661 ~~~~~l 666 (681)
.-...|
T Consensus 112 ~QA~~L 117 (134)
T 3o48_A 112 KQVGAL 117 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 443333
No 240
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.76 E-value=3.6 Score=47.22 Aligned_cols=88 Identities=13% Similarity=0.120 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 040136 256 VVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDV----QTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVL 331 (681)
Q Consensus 256 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 331 (681)
.-|..++..+-+.+.++.+.++-+...+.....+. ..|..+.+.+...|++++|...+-.+.....+ ......|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHH
Confidence 34667777888888888888777766654322221 24677788888888888888888777654332 3456667
Q ss_pred HHHHHhcCCHHHHH
Q 040136 332 MHGLCRTGRVDEAR 345 (681)
Q Consensus 332 ~~~~~~~g~~~~A~ 345 (681)
+...|..|..+.-.
T Consensus 978 V~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 978 VNQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHHHCCHHHHH
T ss_pred HHHHHhCCChhhhh
Confidence 77777777665433
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.75 E-value=7.2 Score=39.07 Aligned_cols=51 Identities=12% Similarity=0.014 Sum_probs=27.6
Q ss_pred CChHHHHHHHHHcHhh----cCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHH
Q 040136 163 GVPGQATRLLLDMKSV----YGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLS 213 (681)
Q Consensus 163 g~~~~A~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 213 (681)
|+++.|++.+..+.+. ............++..+...|+++...+.+.-+..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6666676665544421 11233344555666666666666666555554443
No 242
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.46 E-value=3.5 Score=33.12 Aligned_cols=72 Identities=15% Similarity=0.079 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 040136 587 TPDIVTYNSLINGLCKMGCI---QEALNLFDKLQAEGIYPDAV-TYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDA 661 (681)
Q Consensus 587 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 661 (681)
.|+..+--.+.+++.++.+. .+++.+++.+...+ +.+.. ..-.|.-++.+.|++++|+++.+.+++ +.|+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~-~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcH
Confidence 45565555666666666543 45666777766642 11232 334455567777777777777777776 556543
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.03 E-value=0.82 Score=48.84 Aligned_cols=52 Identities=19% Similarity=0.194 Sum_probs=29.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 040136 598 NGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGLFDDAFLILHKG 651 (681)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 651 (681)
+.|...|+++.|+++.++.+.. .|+ -.+|..|..+|...|+++.|+-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3344556666666666666653 333 456666666666666666666555554
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.76 E-value=12 Score=37.56 Aligned_cols=171 Identities=12% Similarity=0.096 Sum_probs=106.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HHcCCHHHHHH--HHHHHHH--CC-CC
Q 040136 482 TANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKAL----CNAGAVDKGLG--LFEEMMR--KG-IK 552 (681)
Q Consensus 482 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~--~~~~~~~--~~-~~ 552 (681)
.........++..|...|+++...+.+.-+....... ......++..+ ......+.... +.+.... .| +-
T Consensus 53 ~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kif 131 (445)
T 4b4t_P 53 ASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIF 131 (445)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCC
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchH
Confidence 3456778888999999999999888777666542222 22223333332 22332222111 1111111 11 11
Q ss_pred C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C
Q 040136 553 P---SSISCNILINGLCRTRKANTALEFLRDMIHR--GLTPD---IVTYNSLINGLCKMGCIQEALNLFDKLQAE----G 620 (681)
Q Consensus 553 p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~ 620 (681)
. .......|...+...|++.+|.+++.++... |.... ...+...++.|...+++..|..+++++... .
T Consensus 132 lE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~ 211 (445)
T 4b4t_P 132 VEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP 211 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC
Confidence 1 1233456788899999999999999998753 22221 245666778889999999999999887532 2
Q ss_pred CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 621 IYPD--AVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 621 ~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
..|+ ...+...+..+...+++.+|.+.|.++.+
T Consensus 212 ~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 212 KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 2232 23566777888889999999988888875
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.10 E-value=7.5 Score=44.55 Aligned_cols=140 Identities=11% Similarity=0.093 Sum_probs=89.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 040136 221 YTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNS----VVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDV 296 (681)
Q Consensus 221 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l 296 (681)
.-|..++..+-+.|.++.+.+.-....+...+.+. ..|..+.+.+...|++++|...+-.+..... -...+..|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 34677888888889999888887776654322221 2678889999999999999999988876543 35667778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhc------CCCChHHHHHHHHHHHhcC
Q 040136 297 IHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKI------PSANVVLLNTVINGYVISG 370 (681)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~~~~~~~l~~~~~~~g 370 (681)
+..+|..|..+.-.. -. -.|..++..+++..- ....+.-|..|-..+...|
T Consensus 978 V~~lce~~~~~~L~~-------lp----------------f~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~ 1034 (1139)
T 4fhn_B 978 VNQLTKQGKINQLLN-------YS----------------MPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQ 1034 (1139)
T ss_dssp HHHHHHHCCHHHHHH-------HT----------------TTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHH
T ss_pred HHHHHhCCChhhhhC-------CC----------------CccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccC
Confidence 887787776554332 10 012222222222111 1122334566666677788
Q ss_pred CHHHHHHHHHHHHHh
Q 040136 371 RFDEAKAIFYDSMLS 385 (681)
Q Consensus 371 ~~~~a~~~~~~~~~~ 385 (681)
++..|-.++|+...+
T Consensus 1035 dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 1035 NYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHH
Confidence 888888877776654
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.89 E-value=1.5 Score=43.18 Aligned_cols=69 Identities=13% Similarity=0.169 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHH
Q 040136 557 SCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE-----GIYPDAV 626 (681)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~ 626 (681)
....++..+...|++++|+..+..+... .+.+...|..++.++.+.|+..+|++.|+.+.+. |+.|+..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3344555555666666666666665553 2335556666666666666666666666655442 5555543
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.42 E-value=1.3 Score=47.22 Aligned_cols=128 Identities=14% Similarity=0.099 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcC-CHHHHHHHHHHHHHC------CCCC-CH-
Q 040136 487 TYNTLIHAFLRRGS-LHEAHKLVNDMLFRGCPLDEIT-YNGLIKALCNAG-AVDKGLGLFEEMMRK------GIKP-SS- 555 (681)
Q Consensus 487 ~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g-~~~~A~~~~~~~~~~------~~~p-~~- 555 (681)
....++..+...++ .+.|..+++++.+.. |..... ...++..+.+.+ +--+|.+++.+.++. ...+ +.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~-p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKD-PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhC-CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 34556666666666 688999999988873 222222 223333333333 223455555554431 1111 11
Q ss_pred ---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040136 556 ---------ISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKL 616 (681)
Q Consensus 556 ---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 616 (681)
.....=...+...|+++-|+++-++.... .+-+-.+|..|..+|...|+++.|+-.++.+
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11222244466789999999999999885 2335789999999999999999999998877
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.34 E-value=1.6 Score=32.43 Aligned_cols=61 Identities=11% Similarity=0.205 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 571 ANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLI 632 (681)
Q Consensus 571 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 632 (681)
.-+..+-++.+...++.|++.+..+.+.+|.+.+++..|+++|+.+..+ +.+...+|..++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 4455566666666667777777777777777777777777777777665 233344555544
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.75 E-value=3 Score=41.02 Aligned_cols=57 Identities=14% Similarity=0.076 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 525 GLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMI 582 (681)
Q Consensus 525 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 582 (681)
.++..+...|++++|...+..+.... +-+...+..+|.++.+.|+..+|++.|+++.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444445555555555555555432 2244455555555555555555555555543
No 250
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=88.71 E-value=25 Score=36.71 Aligned_cols=45 Identities=13% Similarity=0.016 Sum_probs=20.4
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHH
Q 040136 332 MHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKA 377 (681)
Q Consensus 332 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 377 (681)
+..+.+.+++......+.. ...+...--....+....|+..+|..
T Consensus 79 l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~ 123 (618)
T 1qsa_A 79 VNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQ 123 (618)
T ss_dssp HHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHH
Confidence 4444555555555554443 22233333334444444555444444
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.44 E-value=5.1 Score=31.72 Aligned_cols=71 Identities=17% Similarity=0.107 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040136 552 KPSSISCNILINGLCRTRKA---NTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD 624 (681)
Q Consensus 552 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 624 (681)
.|+..+--.+..++.+..+. .+++.+++++...+..-....+-.|.-++.+.|++++|.++.+.+.+ +.|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 45566555666666666543 35666666666543111233444555566777777777777777776 3554
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.89 E-value=2.9 Score=31.06 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 040136 501 LHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK 549 (681)
Q Consensus 501 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (681)
.-+..+-++.+.....-|++.+..+.+.+|.+.+++..|.++|+.+..+
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555555555555555555443
No 253
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=86.47 E-value=3.4 Score=32.58 Aligned_cols=60 Identities=10% Similarity=0.216 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 573 TALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLIS 633 (681)
Q Consensus 573 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 633 (681)
+..+-++.+...++.|++.+...-+.+|.+.+|+..|+++|+-...+ +.+...+|..++.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 44555566666677777777777777787888888888877777765 3344445655543
No 254
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=86.26 E-value=12 Score=30.14 Aligned_cols=71 Identities=17% Similarity=0.106 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040136 552 KPSSISCNILINGLCRTRK---ANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD 624 (681)
Q Consensus 552 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 624 (681)
.|+..+--.+..++.+..+ ..+++.+++++...+..-.....-.|.-++.+.|++++|.++.+.+++ +.|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCC
Confidence 4556665566666666654 335666666666532111223333455566677777777777777776 3554
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.96 E-value=23 Score=33.19 Aligned_cols=109 Identities=6% Similarity=0.010 Sum_probs=59.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHH---HHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 040136 331 LMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAI---FYDSMLSVGCIPDVFTFNILIHGLCKQRR 407 (681)
Q Consensus 331 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~---~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 407 (681)
+..-|.+.+++++|++++.. -...+.+.|+...|.++ +.+...+.+.+++......++..+.....
T Consensus 39 l~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~ 107 (312)
T 2wpv_A 39 IANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDP 107 (312)
T ss_dssp HHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 33446666666666666433 12234455555554441 34555566777777777777766554321
Q ss_pred hh-HHHHHHHHHHh----cC--CCcCHhhHHHHHHHHHhcCCHHHHHHHH
Q 040136 408 FG-SALELVNAMAV----KG--CEPNIVTYTILVDGFCKEGQLEKANIII 450 (681)
Q Consensus 408 ~~-~A~~~~~~~~~----~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 450 (681)
-+ .-.++++.+.. .| ..-++.....+...|.+.|++.+|...|
T Consensus 108 ~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 108 SEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp TCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 11 12233333332 11 1235667777777888888887776655
No 256
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=83.44 E-value=35 Score=33.25 Aligned_cols=168 Identities=14% Similarity=0.030 Sum_probs=95.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHH---
Q 040136 490 TLIHAFLRRGSLHEAHKLVNDMLFRGCPLD-----EITYNGLIKALCNAGAVDKGLGLFEEMMRK--GIKPSSISCN--- 559 (681)
Q Consensus 490 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~--- 559 (681)
.++..|...|++.+|.+++..+.+.--..| ..++..-+..|...+++.++...+..+... .+.+++....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 578889999999999999888876411212 234555567788899999999999887653 2324443322
Q ss_pred -HHHHHHH-hcCCHHHHHHHHHHHHHC-C-C-CCC---HHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHH
Q 040136 560 -ILINGLC-RTRKANTALEFLRDMIHR-G-L-TPD---IVTYNSLINGLCKMGCIQEALNLFD-KLQAEGIYPDAVTYNT 630 (681)
Q Consensus 560 -~l~~~~~-~~g~~~~A~~~~~~~~~~-~-~-~p~---~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~p~~~~~~~ 630 (681)
.-+-.+. ..+++.+|...|-+..+. . . .|. ...|..| .+. -.++..+-..++. +....-..|+...+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aL-l~~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKI-MLGQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHH-HTTCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHH-HcCCHHHHHHHhccccccccCCccHHHHHH
Confidence 2233345 788999988887766531 1 1 111 1223222 222 2233333333322 2212112455555666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 040136 631 LISWHFKEGLFDDAFLILHKGVANGFVPNDA 661 (681)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 661 (681)
++.++ ..+++.+...+++.... .+..|..
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~ 290 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKK-ELAEDVI 290 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred HHHHH-HhCCHHHHHHHHHHHHH-HHhcChH
Confidence 66654 55677777777766543 3555654
No 257
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=83.39 E-value=21 Score=37.50 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=18.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHcH
Q 040136 154 LIMKYYGRGGVPGQATRLLLDMK 176 (681)
Q Consensus 154 ~l~~~~~~~g~~~~A~~~~~~~~ 176 (681)
.++-.+.|+|.+++|.++.++..
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~ 179 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENK 179 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTG
T ss_pred HHHHHHHhcCCHHHHHHHHHHhh
Confidence 45666779999999999887776
No 258
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=82.24 E-value=11 Score=32.36 Aligned_cols=56 Identities=14% Similarity=0.181 Sum_probs=34.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040136 568 TRKANTALEFLRDMIHRGLTPD-IVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYP 623 (681)
Q Consensus 568 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 623 (681)
.+...++.++|..|...|+--. ...|......+...|++++|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3335566677776666655432 4455666666666677777777777766665555
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.65 E-value=30 Score=31.31 Aligned_cols=115 Identities=16% Similarity=0.173 Sum_probs=69.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCH
Q 040136 494 AFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIK--PSSISCNILINGLCRTRKA 571 (681)
Q Consensus 494 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~ 571 (681)
...+.|++++|++.+..-++.. |.|......|+..+|-.|++++|..-++.+.+.... |....|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-------
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-------
Confidence 3567788888888888777763 778888888888888888888888888887775221 112234444332
Q ss_pred HHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHC
Q 040136 572 NTALEFLRDMIHRGLTP-----DIVTYNSLINGLC--KMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 572 ~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 619 (681)
...=.+...-+-.| ...-...+++++. ..|+.++|.++-.++.+.
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 12222222221111 1223344455443 457888887777777653
No 260
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.14 E-value=18 Score=30.02 Aligned_cols=25 Identities=28% Similarity=0.228 Sum_probs=16.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC
Q 040136 329 GVLMHGLCRTGRVDEARALLNKIPS 353 (681)
Q Consensus 329 ~~l~~~~~~~g~~~~A~~~~~~~~~ 353 (681)
-.+..+|.+.+++++|+.+++.++.
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 3456667777777777777776654
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.18 E-value=6.9 Score=30.89 Aligned_cols=44 Identities=9% Similarity=0.083 Sum_probs=21.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 540 LGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIH 583 (681)
Q Consensus 540 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 583 (681)
.+-++.+...++.|++......+.+|.+.+++..|+++|+-.+.
T Consensus 73 rrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 73 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33344444444445555555555555555555555555554443
No 262
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.13 E-value=10 Score=28.02 Aligned_cols=79 Identities=6% Similarity=0.024 Sum_probs=35.2
Q ss_pred CCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHH
Q 040136 128 KEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNL 207 (681)
Q Consensus 128 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~ 207 (681)
...++|..+-+.+...+. .+.+-..-+..+...|++++|..+.+..- .||...|-++-. .+.|..+++...
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce--~rlGl~s~le~r 91 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCE--YRLGLGSALESR 91 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHH--HHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 344445554444444432 11111222334455555555555554433 555555544433 234444444444
Q ss_pred HHHHHHCC
Q 040136 208 FYDMLSKG 215 (681)
Q Consensus 208 ~~~m~~~~ 215 (681)
+.++...|
T Consensus 92 L~~la~sg 99 (116)
T 2p58_C 92 LNRLARSQ 99 (116)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhCC
Confidence 44444443
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.02 E-value=12 Score=37.19 Aligned_cols=98 Identities=11% Similarity=-0.087 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHH--HH
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRK--GIKPSSISCNILINGLCRTRKANTALEFLRDMIHR---GLTPDIVT--YN 594 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~--~~ 594 (681)
+...+...|.+.|++++|.+.+.++... +...-...+-.+++.+...+++..+...++++... +..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5667888888899999999998888875 33334567777888888888888888888887542 22232211 01
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 595 SLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 595 ~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
.-+-.+...+++.+|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1112234567888887777776654
No 264
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.00 E-value=12 Score=31.05 Aligned_cols=59 Identities=10% Similarity=0.013 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCc-------ccHHHHHHHHHhcCCHHHHHHHHhhc
Q 040136 293 FNDVIHGLCKVNRIHEAAKLVDRMLVRG-FTPDD-------ITYGVLMHGLCRTGRVDEARALLNKI 351 (681)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~ 351 (681)
+-.-+..+...+.++.|+-+.+.+.... ..|+. .++..+.+++...+++..|...|++.
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3334556666777777777766654321 22332 24566677788888888888887763
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.44 E-value=14 Score=36.68 Aligned_cols=111 Identities=12% Similarity=-0.015 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHH--H
Q 040136 486 VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGC--PLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK---GIKPSSIS--C 558 (681)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~--~ 558 (681)
.+...+...|.+.|+.++|.+.+.++..... ..-...+..++..+...+++..+.....++... +..|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3567889999999999999999999987532 334557778889999999999999999988653 32333221 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040136 559 NILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSL 596 (681)
Q Consensus 559 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 596 (681)
..-+..+...+++.+|.+.|-+....-...+...+..+
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~~~ 249 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSYESI 249 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCCccchhhHHHH
Confidence 22233345678999998888777653223344444433
No 266
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=78.06 E-value=9.8 Score=28.10 Aligned_cols=79 Identities=6% Similarity=-0.020 Sum_probs=35.3
Q ss_pred CCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHH
Q 040136 128 KEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNL 207 (681)
Q Consensus 128 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~ 207 (681)
...++|..+-+.+...+. .+.+-..-+..+...|++++|..+.+..- .||...|-++-. .+.|..+++...
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce--~rlGl~s~le~r 90 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFALCE--WHLGLGAALDRR 90 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHH--HHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 344445554444444432 11111222334455555555555543333 455555544433 344555555555
Q ss_pred HHHHHHCC
Q 040136 208 FYDMLSKG 215 (681)
Q Consensus 208 ~~~m~~~~ 215 (681)
+.++...|
T Consensus 91 L~~la~sg 98 (115)
T 2uwj_G 91 LAGLGGSS 98 (115)
T ss_dssp HHHHHTCS
T ss_pred HHHHHhCC
Confidence 54544443
No 267
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=76.24 E-value=53 Score=31.00 Aligned_cols=134 Identities=16% Similarity=0.192 Sum_probs=70.4
Q ss_pred cHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040136 465 RIEEALGLYQDMLLEGV----TANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGL 540 (681)
Q Consensus 465 ~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 540 (681)
++++.+.-++.-++.|- ---..+|.++..=|.+.+++++|++++-.-.. .+.+.|+...|.
T Consensus 11 ~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~ 75 (336)
T 3lpz_A 11 KIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGG 75 (336)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHH
Confidence 34444444444444441 11234667777778888899888887654221 123334443333
Q ss_pred HH----HHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHC----C--CCCCHHHHHHHHHHHHhcCCHHHH
Q 040136 541 GL----FEEMMRKGIKPSSISCNILINGLCRTRKAN-TALEFLRDMIHR----G--LTPDIVTYNSLINGLCKMGCIQEA 609 (681)
Q Consensus 541 ~~----~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~----~--~~p~~~~~~~l~~~~~~~g~~~~A 609 (681)
++ .+-..+.+++++......++..+.....-+ .=.+++++++.. | ..-|......+...|.+.+++.+|
T Consensus 76 DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~A 155 (336)
T 3lpz_A 76 DLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAA 155 (336)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 32 333344466666666666666655444311 113333333321 2 233556666777777777777777
Q ss_pred HHHH
Q 040136 610 LNLF 613 (681)
Q Consensus 610 ~~~~ 613 (681)
...|
T Consensus 156 e~H~ 159 (336)
T 3lpz_A 156 EKHL 159 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 268
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=76.23 E-value=38 Score=29.31 Aligned_cols=154 Identities=13% Similarity=0.050 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHH
Q 040136 112 HTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVV 191 (681)
Q Consensus 112 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 191 (681)
++...-...+..+++.|+......+. ++... ++..+....+.++.+.|..+....+.+.+. .++...-...
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~-~~l~~---~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~-----~~~~~vr~~a 101 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLI-KALKD---EDAWVRRAAADALGQIGDERAVEPLIKALK-----DEDGWVRQSA 101 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHH-HHTTC---SCHHHHHHHHHHHHHHCCGGGHHHHHHHTT-----CSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHH-HHHcC---CCHHHHHHHHHHHHhhCCHHHHHHHHHHHc-----CCCHHHHHHH
Confidence 45555555666666666643333333 33332 355666666666666666443333333333 4565555566
Q ss_pred HHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 040136 192 LDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRV 271 (681)
Q Consensus 192 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 271 (681)
+.++.+.+..+ +...+.+++.. ++...-...+.++.+.|..+ +...+..+... ++..+-...+.++.+.+.
T Consensus 102 ~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~- 172 (211)
T 3ltm_A 102 AVALGQIGDER-AVEPLIKALKD---EDWFVRIAAAFALGEIGDER-AVEPLIKALKD---EDGWVRQSAADALGEIGG- 172 (211)
T ss_dssp HHHHHHHCCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHhCcHH-HHHHHHHHHhC---CCHHHHHHHHHHHHHcCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHHhCc-
Confidence 66666666533 44444444432 45555555666666665543 33333333332 345555555566665554
Q ss_pred hHHHHHHHHHHH
Q 040136 272 SEALMLLEEMIL 283 (681)
Q Consensus 272 ~~A~~~~~~m~~ 283 (681)
.++...+..+.+
T Consensus 173 ~~~~~~L~~~l~ 184 (211)
T 3ltm_A 173 ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHh
Confidence 334444444443
No 269
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=75.65 E-value=55 Score=30.89 Aligned_cols=25 Identities=8% Similarity=-0.039 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 040136 554 SSISCNILINGLCRTRKANTALEFL 578 (681)
Q Consensus 554 ~~~~~~~l~~~~~~~g~~~~A~~~~ 578 (681)
|+.....+...|.+.+++.+|...|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4455555666666666666665554
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=74.83 E-value=13 Score=33.73 Aligned_cols=60 Identities=22% Similarity=0.233 Sum_probs=48.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 040136 563 NGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDA 625 (681)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 625 (681)
....+.|++++|+..+..-++. -+-|...-..|++.+|-.|+|+.|.+-++.+.+. .|+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--Cchh
Confidence 3456789999999998888876 3447777778899999999999999999998884 6664
No 271
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=73.95 E-value=24 Score=28.81 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=34.4
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 040136 609 ALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPND 660 (681)
Q Consensus 609 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 660 (681)
+..+|..|...|+--. ...|......+...|++.+|.++++..++++-.|-.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 6677777777654333 455666666777777777777777777776666633
No 272
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=72.37 E-value=74 Score=30.93 Aligned_cols=224 Identities=10% Similarity=-0.017 Sum_probs=113.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCcC-----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHH
Q 040136 397 ILIHGLCKQRRFGSALELVNAMAVKGCEPN-----IVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALG 471 (681)
Q Consensus 397 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~ 471 (681)
.++..|...|++.+|.+++..+.+.--..| ..++-.-+..|...+++.++...+.......
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~-------------- 169 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA-------------- 169 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh--------------
Confidence 577889999999999999888876311112 3456666778888999999988887765421
Q ss_pred HHHHHHhcCCCCCHHHH----HHHHHHHH-hcCCHHHHHHHHHHHHhC----CCC--CCHHHHHHHHHHHHHcCCHHHHH
Q 040136 472 LYQDMLLEGVTANTVTY----NTLIHAFL-RRGSLHEAHKLVNDMLFR----GCP--LDEITYNGLIKALCNAGAVDKGL 540 (681)
Q Consensus 472 ~~~~~~~~~~~~~~~~~----~~li~~~~-~~g~~~~A~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~A~ 540 (681)
. .+.+++... ..-...+. ..+++..|...|-+..+. +.+ .+...|..|... . .++..+-.
T Consensus 170 ------~-ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aL-l-~~~r~el~ 240 (394)
T 3txn_A 170 ------N-AIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKI-M-LGQSDDVN 240 (394)
T ss_dssp ------H-HSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-H-TTCGGGHH
T ss_pred ------c-cCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH-H-cCCHHHHH
Confidence 0 111222221 11122345 788999998877665422 111 011223222222 2 23322222
Q ss_pred HHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 541 GLFE-EMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 541 ~~~~-~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
.++. .....-..|....+..++.+| ..+++.+..++++..... +..|......+-..+.+ --...+.++.+
T Consensus 241 ~~l~~~~~~~~~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~-l~~D~~l~~h~~~L~~~-----Ir~~~L~~i~~- 312 (394)
T 3txn_A 241 QLVSGKLAITYSGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKE-LAEDVIVQAHLGTLYDT-----MLEQNLCRIIE- 312 (394)
T ss_dssp HHHHSHHHHTTCSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTT-TTTSHHHHHHHHHHHHH-----HHHHHHHHHHT-
T ss_pred HHhccccccccCCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHH-HhcChHHHHHHHHHHHH-----HHHHHHHHHhH-
Confidence 2221 211111345666666666665 567777777777665432 44455422111110000 00111112221
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 040136 620 GIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANG 655 (681)
Q Consensus 620 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 655 (681)
+-...++..+...+.- ..+++...+.+|+..|
T Consensus 313 --pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 313 --PYSRVQVAHVAESIQL--PMPQVEKKLSQMILDK 344 (394)
T ss_dssp --TCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTT
T ss_pred --hhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCC
Confidence 1133444455544432 5677777887777654
No 273
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=69.86 E-value=35 Score=28.29 Aligned_cols=50 Identities=22% Similarity=0.263 Sum_probs=22.4
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 040136 609 ALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGLFDDAFLILHKGVANGFVP 658 (681)
Q Consensus 609 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 658 (681)
+..+|..|...|+--. ...|......+-..|++.+|.++|+..++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3444444444433222 3334444444444455555555555554444444
No 274
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=67.84 E-value=80 Score=29.49 Aligned_cols=81 Identities=17% Similarity=0.009 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 040136 519 DEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRT---RKANTALEFLRDMIHRGLTPDIVTYNS 595 (681)
Q Consensus 519 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~~ 595 (681)
++.....+...|.+.|++.+|+..|-. |-.-+...+..++.-+... |...++ +...-..
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~Ra 194 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRL 194 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHH
Confidence 677788888888899999888876641 1111344444444433333 332221 2222233
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 040136 596 LINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
++. |.-.|+...|..+++...+
T Consensus 195 VL~-yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 195 VFN-YLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHH-HHHTTBHHHHHHHHHHHHH
T ss_pred HHH-HHHhcCHHHHHHHHHHHHH
Confidence 333 4456788888888776653
No 275
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=64.06 E-value=68 Score=27.31 Aligned_cols=121 Identities=14% Similarity=0.023 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHH
Q 040136 148 RESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVM 227 (681)
Q Consensus 148 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 227 (681)
+..+....+.++++.|..+....+...+. .++...-...+.++.+.+..+ +...+.+++.. ++...-...+
T Consensus 58 ~~~vr~~a~~~L~~~~~~~~~~~L~~~l~-----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~ 128 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDERAVEPLIKALK-----DEDGWVRQSAAVALGQIGDER-AVEPLIKALKD---EDWFVRIAAA 128 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTT-----CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SSHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHcC---CCHHHHHHHH
Confidence 44555555555555555433333333332 455555555555555555432 33334444432 3444445555
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 228 KALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMI 282 (681)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 282 (681)
.++.+.++.+ +...+..+... ++..+-...+.++.+.|. .++...+..+.
T Consensus 129 ~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 129 FALGEIGDER-AVEPLIKALKD---EDGWVRQSAADALGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp HHHHHHTCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHhCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 5555555432 33333333322 344444555555555544 23444444444
No 276
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=59.51 E-value=51 Score=24.42 Aligned_cols=70 Identities=17% Similarity=0.092 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHH
Q 040136 304 NRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKA 377 (681)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 377 (681)
...++|..+-+.+...+. ...+-.+-+..+.+.|++++|..+.+....||...|..|.. .+.|..+++..
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHH
Confidence 345555555555544432 11111222334556666666666666655555555554432 34455555544
No 277
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=59.24 E-value=84 Score=26.98 Aligned_cols=58 Identities=17% Similarity=0.079 Sum_probs=44.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 040136 533 AGAVDKGLGLFEEMMRKGIKPS-SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDI 590 (681)
Q Consensus 533 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 590 (681)
.+...++..+|..|...|+.-. ..-|......+...|++++|.++|+.-++.+-.|-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 3446788899999988866544 455677777888889999999999998887666643
No 278
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=58.69 E-value=53 Score=24.37 Aligned_cols=71 Identities=13% Similarity=0.083 Sum_probs=35.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHH
Q 040136 303 VNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKA 377 (681)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 377 (681)
....++|..+-+.+...+. ...+-.+-+..+.+.|++++|..+.+....||...|..|.. .+.|..+++..
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHH
Confidence 3445555555555544432 11112222334556666666666666666566665555433 34455555544
No 279
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=54.49 E-value=99 Score=27.82 Aligned_cols=45 Identities=7% Similarity=-0.052 Sum_probs=21.5
Q ss_pred HhcCChhHHHHHHHHHHhcCCCcCHhh--HHHHHHHHHhcCCHHHHH
Q 040136 403 CKQRRFGSALELVNAMAVKGCEPNIVT--YTILVDGFCKEGQLEKAN 447 (681)
Q Consensus 403 ~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~A~ 447 (681)
+..+......++++.+.+.|..++... -...+...++.|+.+-+.
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 236 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ 236 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence 344554445566666666665544321 112233344556655433
No 280
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=52.19 E-value=40 Score=29.51 Aligned_cols=52 Identities=25% Similarity=0.371 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 040136 607 QEALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGLFDDAFLILHKGVANGFVP 658 (681)
Q Consensus 607 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 658 (681)
+++..+|..|...|+--. ...|......+...|++.+|.++|+..++++-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 345556666665544322 4445555555566666666666666666555555
No 281
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=51.96 E-value=1.2e+02 Score=29.98 Aligned_cols=83 Identities=11% Similarity=-0.014 Sum_probs=35.7
Q ss_pred HHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 040136 155 IMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVN 234 (681)
Q Consensus 155 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 234 (681)
-...+...|++++|.++-...+ .|.-+++.+.+.+-.+=...|+..-.+.+|..+++.| +.+..--.-+.+.....|
T Consensus 367 ~F~~l~~~g~y~~AA~~aA~sP--~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~ 443 (494)
T 1bpo_A 367 KFNALFAQGNYSEAAKVAANAP--KGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESLELCRPVLQQG 443 (494)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSG--GGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHhCc--cccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHhhHHhHHHHhcc
Confidence 3334444455555544444443 2333444444433333333444455555555555554 223332233344444444
Q ss_pred ChhHHH
Q 040136 235 EVDSAC 240 (681)
Q Consensus 235 ~~~~A~ 240 (681)
+.+-..
T Consensus 444 r~~lle 449 (494)
T 1bpo_A 444 RKQLLE 449 (494)
T ss_dssp CHHHHH
T ss_pred HHHHHH
Confidence 444333
No 282
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=50.52 E-value=42 Score=27.79 Aligned_cols=72 Identities=15% Similarity=0.105 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhCCChH
Q 040136 94 VDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEE--GIICRESLFILIMKYYGRGGVPG 166 (681)
Q Consensus 94 ~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 166 (681)
.+.+++-+...+++.|++.++.- ..++..+...++.-.|.++++.+.+. ++..+..+...-+..+.+.|-..
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 35556666666666777776633 34556666666777788888887776 65566666666677777777543
No 283
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=49.96 E-value=71 Score=27.91 Aligned_cols=50 Identities=14% Similarity=-0.003 Sum_probs=22.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccH--HHHHHHHHhcCCHHHHHHHHh
Q 040136 296 VIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITY--GVLMHGLCRTGRVDEARALLN 349 (681)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~ 349 (681)
.+...+..|+.+-+.-+ .+.|..++.... .+.+....+.|+.+-+.-+++
T Consensus 180 ~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 180 ALHWAVLAGNTTVISLL----LEAGANVDAQNIKGESALDLAKQRKNVWMINHLQE 231 (240)
T ss_dssp HHHHHHHHTCHHHHHHH----HHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHH----HHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 34445566665543333 333444433211 123444455566555554443
No 284
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=49.09 E-value=1.3e+02 Score=26.88 Aligned_cols=83 Identities=16% Similarity=0.203 Sum_probs=38.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHh
Q 040136 331 LMHGLCRTGRVDEARALLNKIPS----ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFT--FNILIHGLCK 404 (681)
Q Consensus 331 l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~--~~~ll~~~~~ 404 (681)
.+...+..|+.+-...+++.... .+....+.+.. .+..+......+ +.+.+.+.|..++... -...+...++
T Consensus 151 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~-i~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 228 (285)
T 1wdy_A 151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH-ALLSSDDSDVEA-ITHLLLDHGADVNVRGERGKTPLILAVE 228 (285)
T ss_dssp HHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH-HHHCSCTTTHHH-HHHHHHHTTCCSSCCCTTSCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHH-HHHccccchHHH-HHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence 34445566777777666654221 12222222222 233444433344 5555666665544321 1123444556
Q ss_pred cCChhHHHHHH
Q 040136 405 QRRFGSALELV 415 (681)
Q Consensus 405 ~~~~~~A~~~~ 415 (681)
.|..+-+..++
T Consensus 229 ~~~~~~v~~Ll 239 (285)
T 1wdy_A 229 KKHLGLVQRLL 239 (285)
T ss_dssp TTCHHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 66665544444
No 285
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=48.93 E-value=1.9e+02 Score=28.58 Aligned_cols=116 Identities=6% Similarity=-0.023 Sum_probs=71.6
Q ss_pred HHHHhcCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 040136 84 LCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGG 163 (681)
Q Consensus 84 ~~~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 163 (681)
+.-+....++++.|+++-.+ .|++-....|..-...+...|++++|..+-...+..- -.++.+...+-..=..-|
T Consensus 335 vpyi~~~l~n~~lA~~lA~R----~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~gi-LRt~~Ti~rFk~vp~~pg 409 (494)
T 1bpo_A 335 IPYITNVLQNPDLALRMAVR----NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGI-LRTPDTIRRFQSVPAQPG 409 (494)
T ss_dssp HHHHHHTTCCHHHHHHHHHH----TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGS-SCSHHHHHHHTTSCCCTT
T ss_pred hhhhhhccCCHHHHHHHHHh----cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcccc-ccCHHHHHHHhcCCCCCC
Confidence 33455556899999987766 4666777888888999999999999999887766532 335555544443333345
Q ss_pred ChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHH
Q 040136 164 VPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPN 206 (681)
Q Consensus 164 ~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~ 206 (681)
...--+.+|..+. +.| +.+..----+++....+|+.+-..+
T Consensus 410 q~splL~YF~~Ll-~~g-~Ln~~ESlEl~r~vL~q~r~~llek 450 (494)
T 1bpo_A 410 QTSPLLQYFGILL-DQG-QLNKYESLELCRPVLQQGRKQLLEK 450 (494)
T ss_dssp SCCHHHHHHHHHH-HHS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCHHHHHHHHHh-ccC-ccchHHhhHHhHHHHhccHHHHHHH
Confidence 5555566666665 333 3344333334444445554443333
No 286
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=48.26 E-value=1.1e+02 Score=26.78 Aligned_cols=21 Identities=10% Similarity=0.183 Sum_probs=10.7
Q ss_pred HHhcCChhHHHHHHHHHHhCC
Q 040136 230 LCMVNEVDSACSLLRDMTKHG 250 (681)
Q Consensus 230 ~~~~g~~~~A~~~~~~~~~~~ 250 (681)
.+..|+.+-+..+++.+.+.|
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 344555555555555444443
No 287
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=46.38 E-value=2e+02 Score=27.40 Aligned_cols=28 Identities=11% Similarity=0.269 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 040136 328 YGVLMHGLCRTGRVDEARALLNKIPSAN 355 (681)
Q Consensus 328 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 355 (681)
...++.-|...++.++|...++++..+.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~p~ 84 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNLGE 84 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTCCG
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCch
Confidence 4567888888899999999998887644
No 288
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=45.40 E-value=1.3e+02 Score=26.77 Aligned_cols=90 Identities=14% Similarity=0.169 Sum_probs=49.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 526 LIKALCNAGAVDKGLGLFEEMMRK--GIKP----SSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLING 599 (681)
Q Consensus 526 l~~~~~~~g~~~~A~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 599 (681)
-++.+....++++|..+.++..+. +.++ ........+..-.....-.-+..+.+++ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 467777888888888888876553 2221 1111122233333333333344444444 22 3455555666677
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 040136 600 LCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~ 618 (681)
+.+.|+.++|.++|-+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 7778888888887776654
No 289
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=45.20 E-value=1.4e+02 Score=25.38 Aligned_cols=154 Identities=13% Similarity=0.012 Sum_probs=95.1
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHH
Q 040136 147 CRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVV 226 (681)
Q Consensus 147 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 226 (681)
++..+....+..+.+.|..+..-.+.+.+. .++...-...+.++.+.+.. .+...+.+++.. ++...-...
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~-----~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~~---~~~~vr~~a 101 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALK-----DEDAWVRRAAADALGQIGDE-RAVEPLIKALKD---EDGWVRQSA 101 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTT-----CSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHc-----CCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHcC---CCHHHHHHH
Confidence 366777777777777777544444444444 46666666677777777754 445555555543 566677777
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 040136 227 MKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRI 306 (681)
Q Consensus 227 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 306 (681)
+.++.+.|+.+ +...+..+.. .++..+-...+.++.+.|..+ +...+..+.. .++...-...+.++.+.+.
T Consensus 102 ~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~- 172 (211)
T 3ltm_A 102 AVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG- 172 (211)
T ss_dssp HHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-
Confidence 77888877754 3444444443 256666777777777777644 4455555543 4566666677777777776
Q ss_pred HHHHHHHHHHHH
Q 040136 307 HEAAKLVDRMLV 318 (681)
Q Consensus 307 ~~a~~~~~~~~~ 318 (681)
..+...+..+..
T Consensus 173 ~~~~~~L~~~l~ 184 (211)
T 3ltm_A 173 ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHh
Confidence 445555555554
No 290
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=44.23 E-value=1.2e+02 Score=24.70 Aligned_cols=72 Identities=13% Similarity=0.041 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCC
Q 040136 108 EGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRE-SLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQP 183 (681)
Q Consensus 108 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 183 (681)
..+..|+.....-+...-. ...+.++|..|...|+-... ..|..-...+-..|++.+|.++|+.-. ..+-+|
T Consensus 62 ~~YknD~RyLklWl~ya~~---~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi-~~~A~P 134 (152)
T 4a1g_A 62 KKYHNDPRFISYCLKFAEY---NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI-QNQAEP 134 (152)
T ss_dssp GGGTTCHHHHHHHHHHHTT---BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCBS
T ss_pred ccccCCHHHHHHHHHHHHh---cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCcc
Confidence 4456666555444433222 34478888888888764443 345577777888888888888888777 333344
No 291
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=44.08 E-value=3e+02 Score=28.69 Aligned_cols=49 Identities=10% Similarity=-0.043 Sum_probs=26.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040136 562 INGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLF 613 (681)
Q Consensus 562 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 613 (681)
+..+...|....|...+..+... . +......+.......|..+.++...
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 34456677777777777766653 2 2222233444444556665555433
No 292
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=43.85 E-value=2.2e+02 Score=27.19 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 292 TFNDVIHGLCKVNRIHEAAKLVDRML 317 (681)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~~ 317 (681)
....+|.-|...|+.++|.+.++++.
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 45677888888899999988888874
No 293
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=43.07 E-value=1.5e+02 Score=26.28 Aligned_cols=91 Identities=12% Similarity=0.035 Sum_probs=57.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 490 TLIHAFLRRGSLHEAHKLVNDMLFR--GCPL----DEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILIN 563 (681)
Q Consensus 490 ~li~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 563 (681)
--++.+....++++|.+++++..+. +.+. ........+..-.....-.-+..+.+++ .. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHH
Confidence 3578899999999999999887643 2221 1112222233323323333444444555 33 446666777788
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 040136 564 GLCRTRKANTALEFLRDMIH 583 (681)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~~~ 583 (681)
.+.+.|+.++|.++|=+...
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHH
Confidence 99999999999999977765
No 294
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=42.31 E-value=79 Score=25.45 Aligned_cols=59 Identities=8% Similarity=0.053 Sum_probs=34.9
Q ss_pred hCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCh
Q 040136 106 SQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVP 165 (681)
Q Consensus 106 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 165 (681)
+..|++.++.-. .++..+...+..-.|.++++.+.+.++..+..+....++.+.+.|-.
T Consensus 14 ~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 14 KETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 345555555333 33444444555666777777777666655666666666666666654
No 295
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=42.26 E-value=2.2e+02 Score=26.59 Aligned_cols=28 Identities=21% Similarity=0.074 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 040136 628 YNTLISWHFKEGLFDDAFLILHKGVANG 655 (681)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g 655 (681)
....+....|.+++..|..+.+++++.+
T Consensus 210 Lr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 210 LQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 3444445555555555555555555543
No 296
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=42.22 E-value=1.2e+02 Score=26.35 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=7.9
Q ss_pred HHHhcCChhHHHHHHHH
Q 040136 229 ALCMVNEVDSACSLLRD 245 (681)
Q Consensus 229 ~~~~~g~~~~A~~~~~~ 245 (681)
..+..|+.+-+..+++.
T Consensus 85 ~A~~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 85 LACEHRSPTCLRALLDS 101 (241)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHc
Confidence 33445555544444443
No 297
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=40.99 E-value=2.8e+02 Score=27.47 Aligned_cols=82 Identities=17% Similarity=0.160 Sum_probs=48.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 040136 567 RTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGC-----IQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLF 641 (681)
Q Consensus 567 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 641 (681)
+.++.+.|+..+.+|++.|..|....-..+..+.-.-|. ..-|...++.....|.+-........+-.++.+-+-
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~pe~~~~l~~~~~~la~~pks 346 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKS 346 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHcCCcc
Confidence 457899999999999998877776655555555555553 344666677777667332233333333334444443
Q ss_pred hHHHHHH
Q 040136 642 DDAFLIL 648 (681)
Q Consensus 642 ~~A~~~~ 648 (681)
..+...+
T Consensus 347 n~~~~a~ 353 (447)
T 3pvs_A 347 NAVYTAF 353 (447)
T ss_dssp CHHHHHH
T ss_pred hHHHHHH
Confidence 4333333
No 298
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=38.49 E-value=61 Score=29.01 Aligned_cols=19 Identities=11% Similarity=0.340 Sum_probs=9.9
Q ss_pred HHHHHhcCCHHHHHHHHhh
Q 040136 332 MHGLCRTGRVDEARALLNK 350 (681)
Q Consensus 332 ~~~~~~~g~~~~A~~~~~~ 350 (681)
+...+..|+.+-+..++++
T Consensus 229 L~~A~~~g~~~~v~~Ll~~ 247 (260)
T 3jxi_A 229 LMMAAKTGKIGIFQHIIRR 247 (260)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHh
Confidence 3444556666655555443
No 299
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=38.40 E-value=1.1e+02 Score=28.57 Aligned_cols=23 Identities=4% Similarity=0.145 Sum_probs=16.3
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHH
Q 040136 189 NVVLDVLVAGNCHKVAPNLFYDM 211 (681)
Q Consensus 189 ~~ll~~~~~~~~~~~A~~~~~~m 211 (681)
..++.-|...|+.++|...++++
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el 29 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDL 29 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 45667777777777777777765
No 300
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=37.85 E-value=1.5e+02 Score=24.50 Aligned_cols=75 Identities=11% Similarity=0.033 Sum_probs=47.1
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHH
Q 040136 108 EGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRE-SLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFR 186 (681)
Q Consensus 108 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 186 (681)
..+..++.....-+...-.. +.+..+|..|...|+-... ..|..-...+-..|++.+|.++|+.-. ..+.+|-..
T Consensus 57 ~~YknD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi-~~~A~P~~~ 132 (164)
T 2wvi_A 57 KRYYSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGI-QQKAEPLER 132 (164)
T ss_dssp GGGTTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCBSHHH
T ss_pred hhhccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCcHHH
Confidence 44566665554444332222 3467788888887764443 345567777778888888888888777 444455443
No 301
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=37.50 E-value=80 Score=25.43 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=38.1
Q ss_pred hhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChH
Q 040136 105 GSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPG 166 (681)
Q Consensus 105 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 166 (681)
++..|++.+..-. .++..+...+ .-.|.++++.+.+.++..+..+...-+..+.+.|-..
T Consensus 10 L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 10 LRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 4556666665432 3344444445 5678888888877776667777777777777776543
No 302
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=36.19 E-value=1e+02 Score=24.96 Aligned_cols=61 Identities=7% Similarity=0.029 Sum_probs=34.6
Q ss_pred hhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChH
Q 040136 105 GSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPG 166 (681)
Q Consensus 105 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 166 (681)
++..|++.++.- ..++..+...+..-.|.++++.+.+.++..+..+....+..+...|-..
T Consensus 18 l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 18 IKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 344555554432 2344455555556667777777776666556666666666666666543
No 303
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=35.52 E-value=1.5e+02 Score=24.90 Aligned_cols=40 Identities=10% Similarity=0.062 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHCCCCCCcccH--HHHHHHHHhcCCHHHHHH
Q 040136 307 HEAAKLVDRMLVRGFTPDDITY--GVLMHGLCRTGRVDEARA 346 (681)
Q Consensus 307 ~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~ 346 (681)
..-.++++.+.+.|..++.... .+.+...+..|+.+-+.-
T Consensus 155 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~ 196 (201)
T 3hra_A 155 QLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKI 196 (201)
T ss_dssp HHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred hhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHH
Confidence 3335566666667766554321 123344445555554433
No 304
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=35.22 E-value=1.7e+02 Score=25.25 Aligned_cols=50 Identities=10% Similarity=-0.059 Sum_probs=22.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCcCHhh--HHHHHHHHHhcCCHHHHHHHHHH
Q 040136 399 IHGLCKQRRFGSALELVNAMAVKGCEPNIVT--YTILVDGFCKEGQLEKANIIINE 452 (681)
Q Consensus 399 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~ 452 (681)
+...+..|..+-+..++ +.|..++... -...+....+.|+.+-+..+++.
T Consensus 181 L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLLL----EAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHHHHTCHHHHHHHH----HHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence 34445566655443333 3444443211 01223344556666655544443
No 305
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=34.61 E-value=96 Score=20.38 Aligned_cols=43 Identities=9% Similarity=0.096 Sum_probs=32.2
Q ss_pred hhHHhhhcCCCCHHHHHHHhcC-CCChHHHHHHHHHhhhCCCCCC
Q 040136 69 LNELRKSLHKITPFQLCKLLRL-PLDVDTSMEIFTWAGSQEGYCH 112 (681)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~al~~~~~~~~~~~~~~ 112 (681)
+..+..-|+.++...+..+|.. .++.+.|...+-.+ ...++.|
T Consensus 13 l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m-~~~~~~~ 56 (59)
T 1wgl_A 13 LKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQM-GEEPSGP 56 (59)
T ss_dssp HHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHS-SCCCCSC
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC-cCCCCCC
Confidence 4556667889999999998865 88999999988774 3344444
No 306
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=33.43 E-value=4.9e+02 Score=28.85 Aligned_cols=133 Identities=11% Similarity=-0.017 Sum_probs=66.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 040136 153 ILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCM 232 (681)
Q Consensus 153 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 232 (681)
..++..+...|..+-|.++.... +.++..--.+..+|...|++++|...|++.- .|+..+.......
T Consensus 814 ~~l~~~L~~~~~~~~a~eL~~~~------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~------ 880 (950)
T 4gq2_M 814 TELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVL------ 880 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHGGGC------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGG------
T ss_pred HHHHHHHHHhcHHHHHHHHHhhc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccch------
Confidence 34566666777776665543222 3455544456667777788888888876643 2332221111000
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcC
Q 040136 233 VNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDV----QTFNDVIHGLCKVN 304 (681)
Q Consensus 233 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~ 304 (681)
.....++.... .. .....-|..++..+-+.+-++.+.++-+..++.--..|. ..|..+.++.+..|
T Consensus 881 ----~~~~~ll~~~e-~~-~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 881 ----REFQEIAEKYH-HQ-NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp ----HHHHHHHHHTT-TC-SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ----hhhhhccCccc-cc-chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 00111111111 00 112336667777777777777777777666653212222 24555555555443
No 307
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=33.34 E-value=3e+02 Score=25.56 Aligned_cols=63 Identities=19% Similarity=0.358 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCC
Q 040136 489 NTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGA--VDKGLGLFEEMMRKGIK 552 (681)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~ 552 (681)
..++.-|...|+.++|.+.++++.... -....+...+..++-+.++ .+....++..+.+.|+-
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~-f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGG-GHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCc-chHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 455666777788888888888775221 1122334444444444322 34455666666665544
No 308
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=33.02 E-value=2.6e+02 Score=25.28 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=11.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhhc
Q 040136 330 VLMHGLCRTGRVDEARALLNKI 351 (681)
Q Consensus 330 ~l~~~~~~~g~~~~A~~~~~~~ 351 (681)
+.+...+..|+.+-+.-+++.-
T Consensus 131 t~L~~A~~~~~~~~v~~Ll~~g 152 (285)
T 3kea_A 131 TSFYHAVMLNDVSIVSYFLSEI 152 (285)
T ss_dssp SHHHHHHHTTCHHHHHHHHTTS
T ss_pred CHHHHHHHcCCHHHHHHHHhCC
Confidence 3444445556665555555443
No 309
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=32.82 E-value=2.2e+02 Score=23.89 Aligned_cols=153 Identities=13% Similarity=0.012 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHH
Q 040136 148 RESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVM 227 (681)
Q Consensus 148 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 227 (681)
+..+....+..+.+.|..+....+.+.+. .++...-...+.++...+.. .+...+.+++.. ++...-...+
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~-----~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~d---~~~~vr~~a~ 97 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALK-----DEDAWVRRAAADALGQIGDE-RAVEPLIKALKD---EDGWVRQSAA 97 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTT-----CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SSHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHc-----CCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHcC---CCHHHHHHHH
Confidence 44555555555666665443334444333 45666556666667666654 344555555543 5667777777
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 040136 228 KALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIH 307 (681)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 307 (681)
.++.+.++.+ +...+..+.. .++..+-...+.++.+.++.+ +...+..+.. .++...-...+.++...|..
T Consensus 98 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~- 168 (201)
T 3ltj_A 98 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGE- 168 (201)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH-
T ss_pred HHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCch-
Confidence 7888777754 3344444443 246666677777777777643 4444555443 35666666777777777763
Q ss_pred HHHHHHHHHHH
Q 040136 308 EAAKLVDRMLV 318 (681)
Q Consensus 308 ~a~~~~~~~~~ 318 (681)
.+...+..+..
T Consensus 169 ~~~~~L~~~l~ 179 (201)
T 3ltj_A 169 RVRAAMEKLAE 179 (201)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 45555555553
No 310
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=31.69 E-value=1.3e+02 Score=21.07 Aligned_cols=57 Identities=9% Similarity=0.150 Sum_probs=32.8
Q ss_pred CCCCCCHHHHHHHHHHHHcCC-CchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCh
Q 040136 108 EGYCHTFDVYYVLIDKLGANK-EFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVP 165 (681)
Q Consensus 108 ~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 165 (681)
.|+..+..- ..++..+...+ ..-.+.++++.+.+.++..+..+....+..+.+.|-.
T Consensus 11 ~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 11 AGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp TTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred cCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 455555433 33445554443 4556677777776666555666666666666666543
No 311
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=30.65 E-value=1.9e+02 Score=25.08 Aligned_cols=49 Identities=12% Similarity=0.072 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHH--HH-----HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 571 ANTALEFLRDMIHRGLTPDIV--TY-----NSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 571 ~~~A~~~~~~~~~~~~~p~~~--~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
++.|+.+|+.+.+.-..++.. .. ...+..|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 667888887777642111211 11 12334566777777777777777653
No 312
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=30.51 E-value=65 Score=28.81 Aligned_cols=19 Identities=11% Similarity=-0.078 Sum_probs=9.5
Q ss_pred HHHHHHhcCCHHHHHHHHh
Q 040136 331 LMHGLCRTGRVDEARALLN 349 (681)
Q Consensus 331 l~~~~~~~g~~~~A~~~~~ 349 (681)
.+...+..|+.+-+..+++
T Consensus 143 pL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 143 PLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHh
Confidence 3344455555555555444
No 313
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=29.72 E-value=2e+02 Score=23.55 Aligned_cols=70 Identities=14% Similarity=0.122 Sum_probs=39.7
Q ss_pred HHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCCh
Q 040136 166 GQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSK--GISPTVYTFGVVMKALCMVNEV 236 (681)
Q Consensus 166 ~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~ 236 (681)
+.+++-+.+.....|.+.+.. -..++..+...+.+-.|.++++.+.+. +...+..|.-..++.+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 344444444444556555543 245566666666777777777777665 5444555544455555555543
No 314
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=29.59 E-value=2.2e+02 Score=23.63 Aligned_cols=26 Identities=12% Similarity=-0.005 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040136 591 VTYNSLINGLCKMGCIQEALNLFDKL 616 (681)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 616 (681)
..++.+...|...|+.++|+..+..-
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 44566667778888888888877643
No 315
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=29.23 E-value=2.3e+02 Score=22.97 Aligned_cols=23 Identities=22% Similarity=0.566 Sum_probs=10.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 040136 489 NTLIHAFLRRGSLHEAHKLVNDM 511 (681)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~~ 511 (681)
..++.-|...|+.++|.+.++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 33444444444444444444444
No 316
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=29.05 E-value=2.7e+02 Score=23.78 Aligned_cols=17 Identities=24% Similarity=0.599 Sum_probs=8.1
Q ss_pred CCHHHHHHHHHHHHHCC
Q 040136 569 RKANTALEFLRDMIHRG 585 (681)
Q Consensus 569 g~~~~A~~~~~~~~~~~ 585 (681)
.+++.|+-.+-+|++.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 34444444444444444
No 317
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=28.96 E-value=1.5e+02 Score=23.40 Aligned_cols=59 Identities=12% Similarity=0.143 Sum_probs=34.4
Q ss_pred CCCCCCCHHHHHHHHHHHHcCC-CchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChH
Q 040136 107 QEGYCHTFDVYYVLIDKLGANK-EFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPG 166 (681)
Q Consensus 107 ~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 166 (681)
..|++.++.-. .++..+...+ ..-.|.++++.+.+.++..+..+...-++.+.+.|-..
T Consensus 11 ~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 11 KAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 34555555333 3444455554 56667777777777666666666666666666666543
No 318
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=28.84 E-value=3.2e+02 Score=24.48 Aligned_cols=47 Identities=15% Similarity=0.053 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcC
Q 040136 148 RESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGN 199 (681)
Q Consensus 148 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 199 (681)
+..+....+..+.+.|..+ +...+..+.. .++...-...+.++.+.|
T Consensus 36 ~~~vr~~A~~~L~~~~~~~-~~~~L~~~l~----d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 36 NSLKRISSARVLQLRGGQD-AVRLAIEFCS----DKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp SHHHHHHHHHHHHHHCCHH-HHHHHHHHHT----CSSHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHccCCch-HHHHHHHHHc----CCCHHHHHHHHHHHHHhc
Confidence 4445555555555555432 3333333321 344444344444444444
No 319
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=27.41 E-value=1.6e+02 Score=20.52 Aligned_cols=61 Identities=11% Similarity=-0.015 Sum_probs=37.4
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcc
Q 040136 615 KLQAEGIYPDAVTYNTLISWHFKEG-LFDDAFLILHKGVANGFVPNDATWYILVRNLVKEINM 676 (681)
Q Consensus 615 ~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~ 676 (681)
.+.+.|+.....- ..++..+...+ ..-.+.++++.+.+.+...+..|.+..+..+.+.|-.
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 3445565555433 33445555443 4556777777777666556777777777777777744
No 320
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=27.13 E-value=2.7e+02 Score=23.14 Aligned_cols=28 Identities=7% Similarity=-0.067 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 626 VTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
..++.+...|...|+.+||...+..-..
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 3567788889999999999999887654
No 321
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=26.87 E-value=2.1e+02 Score=24.99 Aligned_cols=73 Identities=10% Similarity=0.049 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCC
Q 040136 108 EGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRE-SLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPT 184 (681)
Q Consensus 108 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 184 (681)
..+..|+.....-+.. +. ..+.+..+|..|...|+-... ..|......+-..|++.+|..+|+.-. ..+-.|-
T Consensus 111 ~rYknD~RyLklWl~Y-a~--~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi-~~~A~P~ 184 (223)
T 4aez_C 111 PLYKDDVRYLRIWMQY-VN--YIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGK-RMKAKPF 184 (223)
T ss_dssp GGGTTCHHHHHHHHHH-HT--TCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTCBSH
T ss_pred ccccCCHHHHHHHHHH-HH--ccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCccH
Confidence 3455666554444432 22 235677888888887764443 345577777778888888888888777 3343443
No 322
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=26.64 E-value=2.6e+02 Score=22.68 Aligned_cols=96 Identities=8% Similarity=0.099 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRK--ANTALEFLRDMIHRGLTPDIVTYNSLING 599 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 599 (681)
....++.-|...|+.++|.+.++++...... .......+..++-+.++ .+.+..++..+...++-+.......+...
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~v 89 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 89 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence 3556788888999999999999988532111 23444555556655333 45678888888877766555444444333
Q ss_pred HHhcC----CHHHHHHHHHHHHH
Q 040136 600 LCKMG----CIQEALNLFDKLQA 618 (681)
Q Consensus 600 ~~~~g----~~~~A~~~~~~~~~ 618 (681)
+.... |...|..++.++..
T Consensus 90 l~~ldDl~lDiP~A~~~la~~v~ 112 (152)
T 2ion_A 90 YNEIPDINLDVPHSYSVLERFVE 112 (152)
T ss_dssp HHHHHHHHHHSTTHHHHHHHHHH
T ss_pred HHhChHhccCccchHHHHHHHHH
Confidence 33333 23345555544443
No 323
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.99 E-value=1.2e+02 Score=23.80 Aligned_cols=48 Identities=8% Similarity=0.131 Sum_probs=32.2
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChH
Q 040136 119 VLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPG 166 (681)
Q Consensus 119 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 166 (681)
.++..+...+..-.|.++++.+.+.++..+..+....++.+...|-..
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 344555555666777788888777766666777777777777776543
No 324
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=25.31 E-value=4.1e+02 Score=24.56 Aligned_cols=290 Identities=12% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHh
Q 040136 118 YVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVA 197 (681)
Q Consensus 118 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 197 (681)
...+....+.|+.+.+..+++.-.+.+...+..-++.|..+. ..|+.+-+.-+++.-. .++.............
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~-~~g~~~iv~~Ll~~ga-----~~~~~~~~~~~~~~~~ 99 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAV-QMSREDIVELLLRHGA-----DPVLRKKNGATPFILA 99 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH-HTTCHHHHHHHHHTTC-----CTTCCCTTCCCHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHH-HcCCHHHHHHHHHcCC-----chhhhccCCCchhHHH
Q ss_pred cCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHH--------HHHHHHhcC
Q 040136 198 GNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQT--------LIHALSKSN 269 (681)
Q Consensus 198 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--------li~~~~~~~ 269 (681)
..........+..-....+......-...+...+..|..+-+..+++.-.............. .+...+..|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g 179 (337)
T 4g8k_A 100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 179 (337)
T ss_dssp HHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHT
T ss_pred HhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCC
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHH--HHHHHHHhcCCHHHHHHH
Q 040136 270 RVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYG--VLMHGLCRTGRVDEARAL 347 (681)
Q Consensus 270 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~ 347 (681)
+.+-+..++++.-..--..|..-.+.+...+..... .....+.+.+++.|..++..... +.+...+..|..+....+
T Consensus 180 ~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~-~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~L 258 (337)
T 4g8k_A 180 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD-SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 258 (337)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCT-TTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCc-ccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHH
Q ss_pred HhhcCC----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 040136 348 LNKIPS----ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGC 423 (681)
Q Consensus 348 ~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 423 (681)
++.-.. .|..-++.|..+ ++.|+.+ +.+.+.+.|..++..+ .+...++.|+.+ +.+.+++.|-
T Consensus 259 l~~~~~~vn~~d~~G~TpL~~A-~~~g~~~-----iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA 325 (337)
T 4g8k_A 259 LEQEHIEINDTDSDGKTALLLA-VELKLKK-----IAELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGA 325 (337)
T ss_dssp HTSTTCCTTCBCTTSCBHHHHH-HHTTCHH-----HHHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTC
T ss_pred HHhcCCcccCcCCCCCCHHHHH-HHcCCHH-----HHHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcC
Q ss_pred CcCH
Q 040136 424 EPNI 427 (681)
Q Consensus 424 ~~~~ 427 (681)
.||.
T Consensus 326 ~~d~ 329 (337)
T 4g8k_A 326 KEDF 329 (337)
T ss_dssp CC--
T ss_pred CCCC
No 325
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=24.91 E-value=3.2e+02 Score=23.37 Aligned_cols=16 Identities=13% Similarity=-0.201 Sum_probs=8.5
Q ss_pred HHhCCChHHHHHHHHH
Q 040136 159 YGRGGVPGQATRLLLD 174 (681)
Q Consensus 159 ~~~~g~~~~A~~~~~~ 174 (681)
.+..|+.+-+..+++.
T Consensus 44 A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 44 AALYDNLEAAMVLMEA 59 (232)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHc
Confidence 3355666555555544
No 326
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=24.78 E-value=1.2e+02 Score=24.07 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=30.1
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCh
Q 040136 119 VLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVP 165 (681)
Q Consensus 119 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 165 (681)
.++..+...++.-.|.++++.+.+.++..+..+....+..+.+.|-.
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34455555555666777777777766666666666666666666654
No 327
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=24.58 E-value=1.9e+02 Score=21.19 Aligned_cols=60 Identities=15% Similarity=0.212 Sum_probs=32.1
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcC
Q 040136 136 VLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHK 202 (681)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 202 (681)
++..+.+.|+ .+......+-. .....+.++|.++++.++ ...+.+|..++.++...|+..
T Consensus 26 vld~L~~~~v-lt~~~~e~I~~-~~~~t~~~~ar~Lld~L~-----~rG~~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 26 LWDVLLSREL-FRPHMIEDIQR-AGSGSRRDQARQLIIDLE-----TRGSQALPLFISCLEDTGQDM 85 (97)
T ss_dssp THHHHHHTTS-SCHHHHHHHHT-STTCCHHHHHHHHHHHHT-----TSCTTHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHcCC-CCHHHHHHHHh-ccCCChHHHHHHHHHHHH-----HcChHHHHHHHHHHHHcCcHH
Confidence 5566666664 24443333321 001135677777777777 344566677777766555443
No 328
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=24.57 E-value=2.4e+02 Score=21.60 Aligned_cols=13 Identities=0% Similarity=0.238 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 040136 536 VDKGLGLFEEMMR 548 (681)
Q Consensus 536 ~~~A~~~~~~~~~ 548 (681)
+.+|..-+++...
T Consensus 4 ~~~al~~L~e~~~ 16 (119)
T 1wty_A 4 LARAVERLKAALE 16 (119)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh
Confidence 4455555555543
No 329
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=24.53 E-value=1.7e+02 Score=23.54 Aligned_cols=59 Identities=8% Similarity=0.146 Sum_probs=34.8
Q ss_pred CCCCCCCHHHHHHHHHHHHcCC-CchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChH
Q 040136 107 QEGYCHTFDVYYVLIDKLGANK-EFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPG 166 (681)
Q Consensus 107 ~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 166 (681)
..|++.++.-. .++..+...+ ..-.|.++++.+.+.++..+..+...-+..+...|-+.
T Consensus 10 ~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 10 DAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 34555554332 3344444444 55667777777777666666666666666666666543
No 330
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.47 E-value=7.5e+02 Score=27.37 Aligned_cols=109 Identities=11% Similarity=0.019 Sum_probs=57.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc-cc-cHHHHHHHHHH
Q 040136 398 LIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNT-GD-RIEEALGLYQD 475 (681)
Q Consensus 398 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~-~~~~a~~~~~~ 475 (681)
++..+...|.++-|.++. . -++.+...--.+..+|...|++++|...|+++-. |+.... .. ..+....++..
T Consensus 816 l~~~L~~~~~~~~a~eL~----~-~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----G-WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----G-GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHH----h-hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 666777788777665433 2 2234554445677789999999999999987532 221111 11 11112222211
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040136 476 MLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFR 514 (681)
Q Consensus 476 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 514 (681)
... ......-|..++..|-+.+.++-+.++-+..+..
T Consensus 890 ~e~--~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHH--QNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTT--CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccc--cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 110 0112234555555555666666665555555543
No 331
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=24.25 E-value=2.2e+02 Score=21.01 Aligned_cols=30 Identities=13% Similarity=0.181 Sum_probs=15.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040136 575 LEFLRDMIHRGLTPDIVTYNSLINGLCKMG 604 (681)
Q Consensus 575 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 604 (681)
.++.+++..-|+.|+..+...++..|...+
T Consensus 29 e~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 29 QQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 344444444455555555555555554444
No 332
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=24.14 E-value=2.1e+02 Score=20.71 Aligned_cols=59 Identities=14% Similarity=0.076 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCC
Q 040136 133 IDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNC 200 (681)
Q Consensus 133 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 200 (681)
...+++.+...|+ .+..-+..+.. .....++|..+++.+. .....+|..++.++.+.+.
T Consensus 24 v~~lld~L~~~~v-lt~~~~e~I~~---~~t~~~kar~Lld~l~-----~kG~~af~~F~~aL~~~~~ 82 (94)
T 2p1h_A 24 TSYIMDHMISDGF-LTISEEEKVRN---EPTQQQRAAMLIKMIL-----KKDNDSYVSFYNALLHEGY 82 (94)
T ss_dssp HHHHHHHHHHHTS-SCHHHHHHHHT---SSSHHHHHHHHHHHHT-----TSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHc---CCChHHHHHHHHHHHH-----HcCHHHHHHHHHHHHHcCH
Confidence 4456777777765 34444444333 3566777888887777 4556777777777766654
No 333
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=23.78 E-value=1.1e+02 Score=22.60 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=26.3
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHH
Q 040136 234 NEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEA 274 (681)
Q Consensus 234 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 274 (681)
...++|.++++.+.++| ..+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHH
Confidence 46778888888888777 56777777777665655444
No 334
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.61 E-value=2.6e+02 Score=22.24 Aligned_cols=61 Identities=13% Similarity=-0.026 Sum_probs=36.6
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcc
Q 040136 615 KLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKEINM 676 (681)
Q Consensus 615 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~ 676 (681)
.+.+.|+.+... -..++..+...+..-.|.++++.+.+.+...+..|.+.-|+.+...|-.
T Consensus 12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 344556555432 1233444445555666777777777666556677777777777777743
No 335
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=23.50 E-value=3.1e+02 Score=25.50 Aligned_cols=134 Identities=10% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc------
Q 040136 530 LCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKM------ 603 (681)
Q Consensus 530 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------ 603 (681)
+...|++++|+..|+.++.. ..+.......+.+++.+++....+ +....-++.-.+.
T Consensus 112 ~~t~gKf~eAl~~Fr~iL~~----------i~l~~v~~~~e~~e~~eli~icre-------Yilal~iEl~Rr~l~~~~~ 174 (320)
T 3mkr_B 112 LTTVGKFEEAVEKFRSILLS----------VPLLVVDNKQEIAEAQQLITICRE-------YIVGLSMETERKKLPKETL 174 (320)
T ss_dssp HHHTTCHHHHHHHHHHHHHH----------GGGCCCCSHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTTSCCCSH
T ss_pred HHhcCCHHHHHHHHHHHHHH----------hhheeeccHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcccCCc
Q ss_pred CCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcccccC
Q 040136 604 GCIQEALNLFDKLQAEGIYPD--AVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKEINMESWN 680 (681)
Q Consensus 604 g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~~~ 680 (681)
.+.....++.-.+...++.|. .-+...-+....+.+++..|..+.+++++.+-.++...-..-+..-+.+.-.++..
T Consensus 175 ~~~kR~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~~~qArkil~~ce~~~~da~e 253 (320)
T 3mkr_B 175 EQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPEVAQQTRKILSACEKNPTDAYQ 253 (320)
T ss_dssp HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCBSSC
T ss_pred hhHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCccc
No 336
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=23.39 E-value=2.7e+02 Score=21.75 Aligned_cols=22 Identities=23% Similarity=0.558 Sum_probs=9.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 040136 490 TLIHAFLRRGSLHEAHKLVNDM 511 (681)
Q Consensus 490 ~li~~~~~~g~~~~A~~~~~~~ 511 (681)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3344444444444444444443
No 337
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=23.25 E-value=2.9e+02 Score=22.16 Aligned_cols=61 Identities=15% Similarity=0.132 Sum_probs=37.2
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcc
Q 040136 615 KLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKEINM 676 (681)
Q Consensus 615 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~ 676 (681)
.+.+.|+.+.. --..++..+...+..-.|.++++.+.+.+...+..|.+.-|+.+...|-.
T Consensus 17 ~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 34455654432 22344555555566667778888877766566777777777777777744
No 338
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=23.22 E-value=2.9e+02 Score=24.92 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=9.6
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 040136 296 VIHGLCKVNRIHEAAKLVDR 315 (681)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~ 315 (681)
.+...+..|..+-+.-+++.
T Consensus 164 ~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 164 CIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHc
Confidence 34444555555544444443
No 339
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=23.13 E-value=3.1e+02 Score=22.47 Aligned_cols=53 Identities=19% Similarity=0.276 Sum_probs=36.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHHcCCHHHHHHHHHHHHH
Q 040136 496 LRRGSLHEAHKLVNDMLFRGCPL--DEITYNGLIK-A-----LCNAGAVDKGLGLFEEMMR 548 (681)
Q Consensus 496 ~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~~ 548 (681)
...|++-+|.++++..-.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34488888988888887664444 4556666666 2 2346888888888887765
No 340
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=22.54 E-value=3.7e+02 Score=23.15 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=18.8
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 532 NAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRT 568 (681)
Q Consensus 532 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 568 (681)
+-.+.+.|+-++-+|++.|-.|....-..++.+.-..
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDI 83 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDI 83 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Confidence 3455666666666666665544444434444443333
No 341
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=22.18 E-value=1.6e+02 Score=22.95 Aligned_cols=47 Identities=11% Similarity=-0.065 Sum_probs=32.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcc
Q 040136 630 TLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKEINM 676 (681)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~ 676 (681)
.+++.+...+..-.|.++++.+.+.+...+..|.+..++.+...|-.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 34455555566667788888887776666777777777887777744
No 342
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.46 E-value=5.5e+02 Score=24.71 Aligned_cols=58 Identities=12% Similarity=0.117 Sum_probs=34.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC----------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 526 LIKALCNAGAVDKGLGLFEEMMRKG----------------IKPSSISCNILINGLCRTRKANTALEFLRDMIH 583 (681)
Q Consensus 526 l~~~~~~~g~~~~A~~~~~~~~~~~----------------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 583 (681)
++.+.....+.++|..+++.+...- ...-......++..|...|+.++|..++++...
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~ 155 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEK 155 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445556677777777777764321 011233344556666667777777777776653
No 343
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=21.36 E-value=2.4e+02 Score=20.38 Aligned_cols=60 Identities=18% Similarity=0.205 Sum_probs=34.9
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 040136 204 APNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRV 271 (681)
Q Consensus 204 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 271 (681)
...++..+.+.|+- +..-+..+.. .....++|.++++.+...| ..+|..++.++...+..
T Consensus 24 v~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~~~~ 83 (94)
T 2p1h_A 24 TSYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKD----NDSYVSFYNALLHEGYK 83 (94)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHcCHH
Confidence 34555566655543 2222222221 2456777888887777766 66777777777766653
No 344
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=21.30 E-value=2.7e+02 Score=22.17 Aligned_cols=58 Identities=14% Similarity=-0.113 Sum_probs=32.8
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc
Q 040136 616 LQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKEIN 675 (681)
Q Consensus 616 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 675 (681)
+.+.|+++...= ..++..+...+ .-.|.++++.+.+.+...+..|.+.-|+.+...|-
T Consensus 10 L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 10 LRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 444455544321 22333344444 55677777777666555666777777777776664
No 345
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=21.18 E-value=2.5e+02 Score=23.35 Aligned_cols=15 Identities=13% Similarity=0.410 Sum_probs=7.7
Q ss_pred HHHHHHHHhcCCCcC
Q 040136 412 LELVNAMAVKGCEPN 426 (681)
Q Consensus 412 ~~~~~~~~~~~~~~~ 426 (681)
.++.+.+.+.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 445555555554443
No 346
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=21.10 E-value=3e+02 Score=21.46 Aligned_cols=95 Identities=8% Similarity=0.101 Sum_probs=56.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 523 YNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRK--ANTALEFLRDMIHRGLTPDIVTYNSLINGL 600 (681)
Q Consensus 523 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 600 (681)
...++.-|...|+.++|.+.++++...... .......+..++-+.++ .+....++..+...|+-+.......+...+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~ 88 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 88 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 456788888999999999999988532111 23444555556655432 466788888888777665554444444433
Q ss_pred HhcC----CHHHHHHHHHHHHH
Q 040136 601 CKMG----CIQEALNLFDKLQA 618 (681)
Q Consensus 601 ~~~g----~~~~A~~~~~~~~~ 618 (681)
.... |...|..++.++..
T Consensus 89 ~~l~Dl~lDiP~a~~~l~~~v~ 110 (129)
T 2nsz_A 89 NEIPDINLDVPHSYSVLERFVE 110 (129)
T ss_dssp HHHHHHHHHSTTHHHHHHHHHH
T ss_pred hhChHhhcCccchHHHHHHHHH
Confidence 3333 23345555444443
No 347
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.85 E-value=1.5e+02 Score=23.61 Aligned_cols=47 Identities=13% Similarity=-0.029 Sum_probs=31.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcc
Q 040136 630 TLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKEINM 676 (681)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~ 676 (681)
.++..+...+..-.|.++++.+.+.+...+..|.+.-|+.+...|-.
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34555555555667777777777766666777777777777777744
No 348
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=20.38 E-value=3.4e+02 Score=21.79 Aligned_cols=60 Identities=13% Similarity=-0.014 Sum_probs=35.1
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcc
Q 040136 616 LQAEGIYPDAVTYNTLISWHFKEG-LFDDAFLILHKGVANGFVPNDATWYILVRNLVKEINM 676 (681)
Q Consensus 616 ~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~ 676 (681)
+.+.|+.+...= ..++..+...+ ..-.|.++++.+.+.+...+..|.+.-|+.+...|-.
T Consensus 8 l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 8 LKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 445555544321 23334444444 5556777777777766556677777777777777643
Done!