BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040141
(602 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A01|A Chain A, Crystal Structure Of The H-Translocating Pyrophosphatase
pdb|4A01|B Chain B, Crystal Structure Of The H-Translocating Pyrophosphatase
Length = 766
Score = 630 bits (1626), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/703 (53%), Positives = 432/703 (61%), Gaps = 124/703 (17%)
Query: 9 TQVLTPXXXXXXXXXXXXXWVLVSKVKIS-------NGAGSNGDDDRLIXXXXXXXGVDS 61
T++L P W+LVSKVK+S N A NG +D LI G++
Sbjct: 11 TEILIPVCAVIGIAFALFQWLLVSKVKLSAVRDASPNAAAKNGYNDYLIEEEE---GIND 67
Query: 62 LEAAIKCAEIQNAISVGATSFLFPQYKYLSVVMGVFSTIIFLFQGSVKGFSTKHEPCTYN 121
+KCAEIQNAIS GATSFLF +YKY+ + M F+ +IFLF GSV+GFST + C+Y+
Sbjct: 68 HNVVVKCAEIQNAISEGATSFLFTEYKYVGIFMVAFAILIFLFLGSVEGFSTSPQACSYD 127
Query: 122 TGIMCKPALVNAIFSTIAFLLGALTSTLSGFLGMKITTYANARTTLEARKGVSKAFITAF 181
CKPAL AIFST++FLLG +TS +SGFLGMKI TYANARTTLEARKGV KAFITAF
Sbjct: 128 KTKTCKPALATAIFSTVSFLLGGVTSLVSGFLGMKIATYANARTTLEARKGVGKAFITAF 187
Query: 182 RARAVMGXXXXXXXXXXXYVSINLFKLYYDDDWEGLYESITGYDLSGSSMALFGRVGGGI 241
R+ AVMG Y++INLFK+YY DDW GL+E+ITGY L GSSMALFGRVGGGI
Sbjct: 188 RSGAVMGFLLAANGLLVLYIAINLFKIYYGDDWGGLFEAITGYGLGGSSMALFGRVGGGI 247
Query: 242 YTKAVDV----------------------IADNVGYNVGEIAGMGFDLFGSYA------- 272
YTKA DV IADNVG NVG+IAGMG DLFGSYA
Sbjct: 248 YTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAAL 307
Query: 273 ---------------------VILSMGIVVCMITTLFATDLFQIKSVSEIELSFKRQLLI 311
++ S+GI+VC++TTLFATD F+IK+V EIE + K+QL+I
Sbjct: 308 VVASISSFGLNHELTAMLYPLIVSSVGILVCLLTTLFATDFFEIKAVKEIEPALKKQLVI 367
Query: 312 STIFDDC------------------WHCHLASNSRHLFFCVATGLWAGLVIVYTTEYYTS 353
ST+ + S LF CVA GLWAGL+I + TEYYTS
Sbjct: 368 STVLMTIGVAVVSFVALPTSFTIFNFGVQKDVKSWQLFLCVAVGLWAGLIIGFVTEYYTS 427
Query: 354 NAYSA--GLADSYKRGASTNVIFDLALGYKSXXXXXXXXXXXXXXXXXXXXMYGIAVAAL 411
NAYS +ADS + GA+TNVIF LALGYKS MYGIAVAAL
Sbjct: 428 NAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAISIFVSFTFAAMYGIAVAAL 487
Query: 412 GMLSTIATRLTIDAYGPISGIAGGIAEMAL-----------------------HGFAIRS 448
GMLSTIAT L IDAYGPIS AGGIAEMA GFAI S
Sbjct: 488 GMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGS 547
Query: 449 AAVVSLALFRAFVSQAGIETVNLLTPKAFVGLIVGAMLPCWFSSTTMKSVGSIALKMVEE 508
AA+VSLALF AFVS+A I TV++LTPK F+GLIVGAMLP WFS+ TMKSVGS ALKMVEE
Sbjct: 548 AALVSLALFGAFVSRASITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEE 607
Query: 509 VRRHFNTIPGQNQTT-----QLVSRFPLMPHPEKMIPQGALVILTPLIAGTLFGVET--- 560
VRR FNTIPG + T + ++MIP GALV+LTPL+ G LFGVET
Sbjct: 608 VRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLVVGILFGVETLSG 667
Query: 561 -LAGSLVSGVQFVQLFPFFFSPHVAISASNTGGAWDNAKKYIE 602
LAGSLVSGVQ +AISASNTGGAWDNAKKYIE
Sbjct: 668 VLAGSLVSGVQ------------IAISASNTGGAWDNAKKYIE 698
>pdb|4AV3|A Chain A, Crystal Structure Of Thermotoga Maritima Sodium Pumping
Membrane Integral Pyrophosphatase With Metal Ions In
Active Site
pdb|4AV3|B Chain B, Crystal Structure Of Thermotoga Maritima Sodium Pumping
Membrane Integral Pyrophosphatase With Metal Ions In
Active Site
pdb|4AV6|A Chain A, Crystal Structure Of Thermotoga Maritima Sodium Pumping
Membrane Integral Pyrophosphatase At 4 A In Complex With
Phosphate And Magnesium
pdb|4AV6|B Chain B, Crystal Structure Of Thermotoga Maritima Sodium Pumping
Membrane Integral Pyrophosphatase At 4 A In Complex With
Phosphate And Magnesium
Length = 735
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 150/317 (47%), Gaps = 57/317 (17%)
Query: 331 FFCVATGLWAGLVIVYTTEYYTSNAYSAG--LADSYKRGASTNVIFDLALGYKSXXXXXX 388
+F G+++G++I + EYYTS Y L S G + L+LG KS
Sbjct: 372 WFSAIIGIFSGILIGFWAEYYTSYRYKPTQFLGKSSIEGTGMVISNGLSLGMKSVFPPTL 431
Query: 389 XXXXXXXXXXXXXXMYGIAVAALGMLSTIATRLTIDAYGPISGIAGGIAEMAL------- 441
+YG+A+AALGMLS +AT +++D+YGPI+ AGGI+EM
Sbjct: 432 TLVLGILFADYFAGLYGVAIAALGMLSFVATSVSVDSYGPIADNAGGISEMCELDPEVRK 491
Query: 442 ----------------HGFAIRSAAVVSLALFRAFV------SQAG-----IETVNLLTP 474
GFAI SA +L+LF +++ S G + +N+L
Sbjct: 492 ITDHLDAVGNTTAAIGKGFAIGSAIFAALSLFASYMFSQISPSDIGKPPSLVLLLNMLDA 551
Query: 475 KAFVGLIVGAMLPCWFSSTTMKSVGSIALKMVEEVRRHFNTIPG---------QNQTTQL 525
+ G ++GA + +FS + +V A+KMV+E+RR IPG N+ ++
Sbjct: 552 RVIAGALLGAAITYYFSGYLISAVTKAAMKMVDEIRRQAREIPGLLEGKAKPDYNRCIEI 611
Query: 526 VSRFPLMPHPEKMIPQGALVILTPLIAGTLFGVETLAGSLVSGVQFVQLFPFFFSPHVAI 585
S L ++M + ILTPL+ G L G E + G L+ V +AI
Sbjct: 612 TSDNAL----KQMGYPAFIAILTPLVTGFLLGAEFVGGVLIGTV--------LSGAMLAI 659
Query: 586 SASNTGGAWDNAKKYIE 602
+N+GGAWDNAKKY+E
Sbjct: 660 LTANSGGAWDNAKKYLE 676
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 108/246 (43%), Gaps = 64/246 (26%)
Query: 63 EAAIKCAEIQNAISVGATSFLFPQYKYLSVVMGVFSTIIFLFQGSVKGFSTKHEPCTYNT 122
E + EI + I GA SFL + K + V V + ++ +F T+ T
Sbjct: 39 EGTERMKEISSYIRSGADSFLAHETKAIFKVAIVIAILLMIF-------------TTWQT 85
Query: 123 GIMCKPALVNAIFSTIAFLLGALTSTLSGFLGMKITTYANARTTLEAR--KGVSKAFITA 180
G+ AFLLGA+ S +G +GMK+ T AN R AR K + A A
Sbjct: 86 GV--------------AFLLGAVMSASAGIVGMKMATRANVRVAEAARTTKKIGPALKVA 131
Query: 181 FRARAVMGXXXXXXXXXXXYV-------------SINLFKLYYDDDWEGLYESITGYDLS 227
++ +VMG + ++N++ + ++ +++GY L
Sbjct: 132 YQGGSVMGLSVGGFALLGLVLVYLIFGKWMGQVDNLNIYTNWLGINFVPFAMTVSGYALG 191
Query: 228 GSSMALFGRVGGGIYTKAVDV----------------------IADNVGYNVGEIAGMGF 265
S +A+F RVGGG+YTKA D+ IADNVG NVG++AG+G
Sbjct: 192 CSIIAMFDRVGGGVYTKAADMAADLVGKTELNLPEDDPRNPATIADNVGDNVGDVAGLGA 251
Query: 266 DLFGSY 271
DL S+
Sbjct: 252 DLLESF 257
>pdb|1MDT|A Chain A, The Refined Structure Of Monomeric Diphtheria Toxin At 2.3
Angstroms Resolution
pdb|1MDT|B Chain B, The Refined Structure Of Monomeric Diphtheria Toxin At 2.3
Angstroms Resolution
pdb|1TOX|A Chain A, Diphtheria Toxin Dimer Complexed With Nad
pdb|1TOX|B Chain B, Diphtheria Toxin Dimer Complexed With Nad
pdb|1XDT|T Chain T, Complex Of Diphtheria Toxin And Heparin-Binding Epidermal
Growth Factor
pdb|1F0L|A Chain A, 1.55 Angstrom Crystal Structure Of Wild Type Diphtheria
Toxin
pdb|1F0L|B Chain B, 1.55 Angstrom Crystal Structure Of Wild Type Diphtheria
Toxin
pdb|1DDT|A Chain A, The Refined Structure Of Dimeric Diphtheria Toxin At 2.0
Angstroms Resolution
pdb|1SGK|A Chain A, Nucleotide-Free Diphtheria Toxin
Length = 535
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 26/123 (21%)
Query: 210 YDDDWEGLYESITGYDLSGSSM----ALFGRVGGGIY------TKAVDVIADN------- 252
YDDDW+G Y + YD +G S+ L G+ GG + TK + + DN
Sbjct: 46 YDDDWKGFYSTDNKYDAAGYSVDNENPLSGKAGGVVKVTYPGLTKVLALKVDNAETIKKE 105
Query: 253 VGYNVGE--IAGMGFDLF------GSYAVILSMGIVVCMITTLFATDLFQIKSVS-EIEL 303
+G ++ E + +G + F G+ V+LS+ + + + Q K++S E+E+
Sbjct: 106 LGLSLTEPLMEQVGTEEFIKRFGDGASRVVLSLPFAEGSSSVEYINNWEQAKALSVELEI 165
Query: 304 SFK 306
+F+
Sbjct: 166 NFE 168
>pdb|1DTP|A Chain A, The Structure Of The Isolated Catalytic Domain Of
Diphtheria Toxin
Length = 190
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 26/123 (21%)
Query: 210 YDDDWEGLYESITGYDLSGSSM----ALFGRVGGGI------YTKAVDVIADN------- 252
YDDDW+G Y + YD +G S+ L G+ GG + TK + + DN
Sbjct: 46 YDDDWKGFYSTDNKYDAAGYSVDNENPLSGKAGGVVKVTYPGLTKVLALKVDNAETIKKE 105
Query: 253 VGYNVGE--IAGMGFDLF------GSYAVILSMGIVVCMITTLFATDLFQIKSVS-EIEL 303
+G ++ E + +G + F G+ V+LS+ + + + Q K++S E+E+
Sbjct: 106 LGLSLTEPLMEQVGTEEFIKRFGDGASRVVLSLPFAEGSSSVEYINNWEQAKALSVELEI 165
Query: 304 SFK 306
+F+
Sbjct: 166 NFE 168
>pdb|4AE0|A Chain A, Crystal Structure Of Diphtheria Toxin Mutant Crm197
pdb|4AE1|A Chain A, Crystal Structure Of Diphtheria Toxin Mutant Crm197 In
Complex With Nicotinamide
pdb|4AE1|B Chain B, Crystal Structure Of Diphtheria Toxin Mutant Crm197 In
Complex With Nicotinamide
Length = 535
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 26/123 (21%)
Query: 210 YDDDWEGLYESITGYDLSGSSM----ALFGRVGGGIY------TKAVDVIADN------- 252
YDDDW+ Y + YD +G S+ L G+ GG + TK + + DN
Sbjct: 46 YDDDWKEFYSTDNKYDAAGYSVDNENPLSGKAGGVVKVTYPGLTKVLALKVDNAETIKKE 105
Query: 253 VGYNVGE--IAGMGFDLF------GSYAVILSMGIVVCMITTLFATDLFQIKSVS-EIEL 303
+G ++ E + +G + F G+ V+LS+ + + + Q K++S E+E+
Sbjct: 106 LGLSLTEPLMEQVGTEEFIKRFGDGASRVVLSLPFAEGSSSVEYINNWEQAKALSVELEI 165
Query: 304 SFK 306
+F+
Sbjct: 166 NFE 168
>pdb|1FLV|A Chain A, Structure Of The Oxidized Long Chain Flavodoxin From
Anabaena 7120 At 2 Angstroms Resolution
pdb|1RCF|A Chain A, Structure Of The Trigonal Form Of Recombinant Oxidized
Flavodoxin From Anabaena 7120 At 1.40 Angstroms
Resolution
Length = 169
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 213 DWEGLYESITGYDLSGSSMALFG---RVG-GGIYTKAVDVIADNV----GYNVGEIAGMG 264
DWEGLY + D +G +A FG ++G + A+ ++ + + G VG + G
Sbjct: 65 DWEGLYSELDDVDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDG 124
Query: 265 FDLFGSYAV 273
+D S A+
Sbjct: 125 YDFNDSKAL 133
>pdb|1QHE|A Chain A, Energetics Of A Hydrogen Bond (Charged And Neutral) And Of
A Cation-Pi Interaction In Apoflavodoxin
pdb|1FTG|A Chain A, Structure Of Apoflavodoxin: Closure Of A
TyrosineTRYPTOPHAN AROMATIC Gate Leads To A Compact Fold
Length = 168
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 213 DWEGLYESITGYDLSGSSMALFG---RVG-GGIYTKAVDVIADNV----GYNVGEIAGMG 264
DWEGLY + D +G +A FG ++G + A+ ++ + + G VG + G
Sbjct: 64 DWEGLYSELDDVDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDG 123
Query: 265 FDLFGSYAV 273
+D S A+
Sbjct: 124 YDFNDSKAL 132
>pdb|2V5V|A Chain A, W57e Flavodoxin From Anabaena
pdb|2V5V|B Chain B, W57e Flavodoxin From Anabaena
Length = 169
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 213 DWEGLYESITGYDLSGSSMALFG---RVG-GGIYTKAVDVIADNV----GYNVGEIAGMG 264
DWEGLY + D +G +A FG ++G + A+ ++ + + G VG + G
Sbjct: 65 DWEGLYSELDDVDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDG 124
Query: 265 FDLFGSYAV 273
+D S A+
Sbjct: 125 YDFNDSKAL 133
>pdb|1OBO|A Chain A, W57l Flavodoxin From Anabaena
pdb|1OBO|B Chain B, W57l Flavodoxin From Anabaena
Length = 169
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 213 DWEGLYESITGYDLSGSSMALFG---RVG-GGIYTKAVDVIADNV----GYNVGEIAGMG 264
DWEGLY + D +G +A FG ++G + A+ ++ + + G VG + G
Sbjct: 65 DWEGLYSELDDVDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDG 124
Query: 265 FDLFGSYAV 273
+D S A+
Sbjct: 125 YDFNDSKAL 133
>pdb|3ESY|A Chain A, E16ke61k Flavodoxin From Anabaena
pdb|3ESY|B Chain B, E16ke61k Flavodoxin From Anabaena
pdb|3ESY|C Chain C, E16ke61k Flavodoxin From Anabaena
pdb|3ESY|D Chain D, E16ke61k Flavodoxin From Anabaena
Length = 169
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 213 DWEGLYESITGYDLSGSSMALFG---RVG-GGIYTKAVDVIADNV----GYNVGEIAGMG 264
DWEGLY + D +G +A FG ++G + A+ ++ + + G VG + G
Sbjct: 65 DWEGLYSELDDVDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDG 124
Query: 265 FDLFGSYAV 273
+D S A+
Sbjct: 125 YDFNDSKAL 133
>pdb|1OBV|A Chain A, Y94f Flavodoxin From Anabaena
Length = 169
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 213 DWEGLYESITGYDLSGSSMALFG---RVG-GGIYTKAVDVIADNV----GYNVGEIAGMG 264
DWEGLY + D +G +A FG ++G + A+ ++ + + G VG + G
Sbjct: 65 DWEGLYSELDDVDFNGKLVAYFGTGDQIGFADNFQDAIGILEEKISQRGGKTVGYWSTDG 124
Query: 265 FDLFGSYAV 273
+D S A+
Sbjct: 125 YDFNDSKAL 133
>pdb|1DX9|A Chain A, W57a Apoflavodoxin From Anabaena
pdb|1DX9|B Chain B, W57a Apoflavodoxin From Anabaena
pdb|1DX9|C Chain C, W57a Apoflavodoxin From Anabaena
pdb|1DX9|D Chain D, W57a Apoflavodoxin From Anabaena
Length = 169
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 213 DWEGLYESITGYDLSGSSMALFG---RVG-GGIYTKAVDVIADNV----GYNVGEIAGMG 264
DWEGLY + D +G +A FG ++G + A+ ++ + + G VG + G
Sbjct: 65 DWEGLYSELDDVDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDG 124
Query: 265 FDLFGSYAV 273
+D S A+
Sbjct: 125 YDFNDSKAL 133
>pdb|3ESZ|A Chain A, K2ak3a Flavodoxin From Anabaena
pdb|3ESZ|B Chain B, K2ak3a Flavodoxin From Anabaena
Length = 169
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 213 DWEGLYESITGYDLSGSSMALFG---RVG-GGIYTKAVDVIADNV----GYNVGEIAGMG 264
DWEGLY + D +G +A FG ++G + A+ ++ + + G VG + G
Sbjct: 65 DWEGLYSELDDVDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDG 124
Query: 265 FDLFGSYAV 273
+D S A+
Sbjct: 125 YDFNDSKAL 133
>pdb|2V5U|A Chain A, I92a Flavodoxin From Anabaena
pdb|2V5U|B Chain B, I92a Flavodoxin From Anabaena
Length = 169
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 213 DWEGLYESITGYDLSGSSMALFGRVGGGIYT----KAVDVIADNV----GYNVGEIAGMG 264
DWEGLY + D +G +A FG Y A+ ++ + + G VG + G
Sbjct: 65 DWEGLYSELDDVDFNGKLVAYFGTGDQAGYADNFQDAIGILEEKISQRGGKTVGYWSTDG 124
Query: 265 FDLFGSYAV 273
+D S A+
Sbjct: 125 YDFNDSKAL 133
>pdb|2KQU|A Chain A, F98n Apoflavodoxin From Anabaena Pcc 7119
Length = 169
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 213 DWEGLYESITGYDLSGSSMALFG 235
DWEGLY + D +G +A FG
Sbjct: 65 DWEGLYSELDDVDFNGKLVAYFG 87
>pdb|3ESX|A Chain A, E16ke61kd126kd150k Flavodoxin From Anabaena
pdb|3ESX|B Chain B, E16ke61kd126kd150k Flavodoxin From Anabaena
Length = 169
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 213 DWEGLYESITGYDLSGSSMALFG---RVG-GGIYTKAVDVIADNVGYNVGEIAG 262
DWEGLY + D +G +A FG ++G + A+ ++ + + G+ G
Sbjct: 65 DWEGLYSELDDVDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVG 118
>pdb|1CZL|A Chain A, Comparisons Of Wild Type And Mutant Flavodoxins From
Anacystis Nidulans. Structural Determinants Of The Redox
Potentials.
pdb|1CZN|A Chain A, Refined Structures Of Oxidized Flavodoxin From Anacystis
Nidulans
pdb|1CZU|A Chain A, Refined Structures Of Oxidized Flavodoxin From Anacystis
Nidulans
pdb|1D04|A Chain A, Comparisons Of Wild Type And Mutant Flavodoxins From
Anacystis Nidulans. Structural Determinants Of The Redox
Potentials.
pdb|1OFV|A Chain A, Flavodoxin From Anacystis Nidulans: Refinement Of Two
Forms Of The Oxidized Protein
Length = 169
Score = 29.3 bits (64), Expect = 6.4, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 213 DWEGLYESITGYDLSGSSMALFGRVGGGIYTKAVDVIADNVGYNVGEIAGMGFDLFGSYA 272
DWEG+Y+ + + G +A F G G D D +G +I+ +G G +
Sbjct: 65 DWEGIYDDLDSVNFQGKKVAYF---GAGDQVGYSDNFQDAMGILEEKISSLGSQTVGYWP 121
Query: 273 V 273
+
Sbjct: 122 I 122
>pdb|1CZR|A Chain A, Comparisons Of Wild Type And Mutant Flavodoxins From
Anacystis Nidulans. Structural Determinants Of The Redox
Potentials
Length = 169
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 213 DWEGLYESITGYDLSGSSMALFGRVGGGIYTKAVDVIADNVGYNVGEIAGMGFDLFGSYA 272
DWEG+Y+ + + G +A F G G D D +G +I+ +G G +
Sbjct: 65 DWEGIYDDLDSVNFQGKKVAYF---GAGNQVGYSDNFQDAMGILEEKISSLGSQTVGYWP 121
Query: 273 V 273
+
Sbjct: 122 I 122
>pdb|1CZH|A Chain A, Comparisons Of Wild Type And Mutant Flavodoxins From
Anacystis Nidulans. Structural Determinants Of The Redox
Potentials.
pdb|1CZO|A Chain A, Comparisons Of Wild Type And Mutant Flavodoxins From
Anacystis Nidulans. Structural Determinants Of The Redox
Potentials.
pdb|1D03|A Chain A, Refined Structures Of Oxidized Flavodoxin From Anacystis
Nidulans
Length = 169
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 213 DWEGLYESITGYDLSGSSMALFGRVGGGIYTKAVDVIADNVGYNVGEIAGMGFDLFGSYA 272
DWEG+Y+ + + G +A F G G D D +G +I+ +G G +
Sbjct: 65 DWEGIYDDLDSVNFQGKKVAYF---GAGDQVGYSDNFQDAMGILEEKISSLGSQTVGYWP 121
Query: 273 V 273
+
Sbjct: 122 I 122
>pdb|1YOB|A Chain A, C69a Flavodoxin Ii From Azotobacter Vinelandii
pdb|1YOB|B Chain B, C69a Flavodoxin Ii From Azotobacter Vinelandii
Length = 179
Score = 28.9 bits (63), Expect = 7.6, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 13/54 (24%)
Query: 211 DDDWEGLYESITGYDLSGSSMALFGRVGGGIYTKAVDVIADNVGYNVGEIAGMG 264
++ WE I G D SG ++ALFG + D VGY + +G
Sbjct: 71 NESWEEFLPKIEGLDFSGKTVALFG-------------LGDQVGYPENYLDALG 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,715,448
Number of Sequences: 62578
Number of extensions: 523701
Number of successful extensions: 1130
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1094
Number of HSP's gapped (non-prelim): 25
length of query: 602
length of database: 14,973,337
effective HSP length: 104
effective length of query: 498
effective length of database: 8,465,225
effective search space: 4215682050
effective search space used: 4215682050
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)