Query 040141
Match_columns 602
No_of_seqs 136 out of 745
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 08:24:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040141.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040141hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a01_A Proton pyrophosphatase; 100.0 2E-192 7E-197 1574.0 30.7 587 1-602 3-698 (766)
2 4av3_A K(+)-stimulated pyropho 100.0 2E-180 8E-185 1490.9 25.5 525 8-602 11-676 (735)
3 4f0a_B Protein WNT-8, XWNT-8; 36.3 21 0.00072 36.9 3.4 23 494-516 18-40 (316)
4 2dae_A KIAA0733 protein; mitog 25.3 32 0.0011 28.9 1.9 16 503-518 11-26 (75)
5 2kyg_C Protein CBFA2T1; protei 23.5 41 0.0014 24.8 2.0 14 500-513 18-31 (38)
6 1oef_A Apolipoprotein E; glyco 19.8 25 0.00084 23.5 0.2 11 505-515 6-16 (26)
7 2o1k_A NS28, non-structural gl 18.7 51 0.0017 25.9 1.8 17 500-516 3-19 (52)
8 3hd7_A Vesicle-associated memb 15.1 2.4E+02 0.0083 23.7 5.3 39 65-103 42-84 (91)
9 2ifo_A Inovirus; helical virus 13.8 2.1E+02 0.007 22.0 4.0 27 7-33 18-44 (46)
10 2zy9_A Mg2+ transporter MGTE; 11.8 9E+02 0.031 25.5 9.9 18 363-380 352-369 (473)
No 1
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton pumping; HET: DMU; 2.35A {Vigna radiata}
Probab=100.00 E-value=2.2e-192 Score=1574.03 Aligned_cols=587 Identities=69% Similarity=1.060 Sum_probs=538.9
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHHHHhheeccCCC-------CCCCCCchhhhHHhhhcCCcchhhhHHHHHHHH
Q 040141 1 MASWSEGHTQVLTPAAAFIGIGFALILWVLVSKVKISNGA-------GSNGDDDRLIEEEEAEEGVDSLEAAIKCAEIQN 73 (602)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~lgl~fa~~~~~~v~~~~~~~~~-------~~nG~~~~l~~~~e~~~G~~~~~v~~~m~~Ia~ 73 (602)
|+.+|+..+..++++++++|++||+++|++|+|+|+++++ ++||.++++.+|+ ||.++|++.+|||||++
T Consensus 3 ~~~~~~~~~~~~i~~~~~~Gi~fa~~~~~~vs~v~~~~~~~~~~~~~~~~g~~~~l~~~~---~g~~~~~~~~~m~eIa~ 79 (766)
T 4a01_A 3 AAILPDLGTEILIPVCAVIGIAFALFQWLLVSKVKLSAVRDASPNAAAKNGYNDYLIEEE---EGINDHNVVVKCAEIQN 79 (766)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCC----------------------------CCHHHHHHHHHHH
T ss_pred cchhhhhhhhhHhHHHHHHHHHHHHHHHHheEeEEecCCccccccccccCCcccccchhh---cccchHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999998652 3677777886665 48888888999999999
Q ss_pred HHHHhHhHhhhhhceehHHHHHHHHHHHHHHhhcccCCCCCCCCCccCCCcccccccchhhHHHHHHHHHHHHHHhhhhh
Q 040141 74 AISVGATSFLFPQYKYLSVVMGVFSTIIFLFQGSVKGFSTKHEPCTYNTGIMCKPALVNAIFSTIAFLLGALTSTLSGFL 153 (602)
Q Consensus 74 ~I~eGA~afL~~qYk~i~~~~~v~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~taiaFllGa~~S~laGyi 153 (602)
+|||||++||+||||++++|.+++++++++++++..+.++++|++.+++...|.+.+..+++++++|++|++||.++||+
T Consensus 80 aI~eGA~afL~rqYk~i~~~~vv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Fl~Ga~~S~~aG~i 159 (766)
T 4a01_A 80 AISEGATSFLFTEYKYVGIFMVAFAILIFLFLGSVEGFSTSPQACSYDKTKTCKPALATAIFSTVSFLLGGVTSLVSGFL 159 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCCCCEEETTEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998877766666677778877777778888888899999999999999999999
Q ss_pred hcchhhhhhhhhHHHHhcChhHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhhhcccchhHHHH
Q 040141 154 GMKITTYANARTTLEARKGVSKAFITAFRARAVMGLLLAANCLLVLYVSINLFKLYYDDDWEGLYESITGYDLSGSSMAL 233 (602)
Q Consensus 154 GM~iAt~aN~Rta~AA~~~~~~al~vAfrgGaVmGl~vvglgLl~l~~~~~~~~~~~~~~~~~~~~~l~Gfg~GaS~iAL 233 (602)
|||+|||||+|||+|||+++++||++|||+|+||||+|++++|++++++|++|..++++++.+.++++.||+||+|++||
T Consensus 160 GM~vat~ANvRtA~AA~~gl~~al~vAfr~GaVmGl~vvglgLlgl~~~~~~~~~~~~~~~~~~~~~l~Gfg~GaS~iAl 239 (766)
T 4a01_A 160 GMKIATYANARTTLEARKGVGKAFITAFRSGAVMGFLLAANGLLVLYIAINLFKIYYGDDWGGLFEAITGYGLGGSSMAL 239 (766)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHhhcchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998766666666678999999999999999
Q ss_pred HHHhcCcccccchh----------------------hhhcccCCccccccccccchhhhHH-------------------
Q 040141 234 FGRVGGGIYTKAVD----------------------VIADNVGYNVGEIAGMGFDLFGSYA------------------- 272 (602)
Q Consensus 234 FaRvGGGIyTKAAD----------------------vIADnVGDNVGD~AGmgADLFESy~------------------- 272 (602)
|+|||||||||||| ||||||||||||||||||||||||+
T Consensus 240 FaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGD~AGmgADLFESy~~t~iaamvlg~~~~~~~~~ 319 (766)
T 4a01_A 240 FGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGLNH 319 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCTTCTTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHTSHHHHTT
T ss_pred HHHhccchhhhhhhhccccccccccCCCCcCCCCcchhhhhhccccccccccchhHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 99999999999999 9999999999999999999999999
Q ss_pred ---------HHHhhhhHhhhhhheeeeeeccccccchHHHHHHHHHHHHHHHHHHHHh--h-h--h-------------c
Q 040141 273 ---------VILSMGIVVCMITTLFATDLFQIKSVSEIELSFKRQLLISTIFDDCWHC--H-L--A-------------S 325 (602)
Q Consensus 273 ---------lisa~gi~~sii~~~~~~~~~~~~~~~~~~~aL~~g~~is~~l~~v~~~--~-~--~-------------~ 325 (602)
+++++||++|++++++++..++.++++|||++||+|+|+|+++++++++ . + + .
T Consensus 320 ~~~~v~~PL~i~a~gii~siig~~~v~~~~~~~~~~~~~~aL~~g~~~s~il~~v~~~~~~~~~l~~~~~~~~~~~~~~~ 399 (766)
T 4a01_A 320 ELTAMLYPLIVSSVGILVCLLTTLFATDFFEIKAVKEIEPALKKQLVISTVLMTIGVAVVSFVALPTSFTIFNFGVQKDV 399 (766)
T ss_dssp CHHHHTHHHHHHHHHHHHHHHHHHHHHTTCCCCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSEEEEEETTEEEEE
T ss_pred chHHHHHHHHHHHHHHHHHHHHhheeEeeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
Confidence 3455678899999988876667788899999999999999999999843 1 1 1 1
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhccCCcccc--ccccccCcCchhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 040141 326 NSRHLFFCVATGLWAGLVIVYTTEYYTSNAYSA--GLADSYKRGASTNVIFDLALGYKSVIIPIFAIAVAAYASFSLAAM 403 (602)
Q Consensus 326 ~~~~~f~~~~~Gl~~g~li~~~TeYyTs~~y~P--~IA~as~tG~ATnII~GlavGm~St~~Pvl~I~~ai~~sy~l~Gl 403 (602)
.+|++|+|+++|+++|++|+++||||||++||| +||++|+||||||||+||++|||||++|+++|++++++||+++||
T Consensus 400 ~~~~~f~~~~~Gl~~g~lI~~iTeYyTs~~~~PV~~IA~aS~TG~ATnII~GlavGm~St~~Pvl~i~~ai~~sy~l~gl 479 (766)
T 4a01_A 400 KSWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAISIFVSFTFAAM 479 (766)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHGGGCHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHhCcCchhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 268899999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhheeecccccccCcchhhhhhc-----------------------CcchhHHHHHHHHHHHHHH
Q 040141 404 YGIAVAALGMLSTIATRLTIDAYGPISGIAGGIAEMAL-----------------------HGFAIRSAAVVSLALFRAF 460 (602)
Q Consensus 404 yGiAiAa~GMLst~g~~la~DayGPIaDNAGGIaEMs~-----------------------KGfAIGSAaL~alaLF~ay 460 (602)
||+|+|++|||||++++|++|+||||+||||||+|||+ ||||||||+|+||+||++|
T Consensus 480 yGiAlAa~GMLst~g~~lAvDayGPIaDNAGGIAEMs~l~~eVR~~TD~LDavGNTTaAi~KGfAIGSAaL~AlaLf~ay 559 (766)
T 4a01_A 480 YGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAF 559 (766)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhheeeeeccCCcccCcccHHHHccCcHHHHHHHHhhhhccCchhhhccchhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 9999999999999999999
Q ss_pred HhhhCCceeecCCchhHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCCCCCCCcccc-----ccccCCcch
Q 040141 461 VSQAGIETVNLLTPKAFVGLIVGAMLPCWFSSTTMKSVGSIALKMVEEVRRHFNTIPGQNQTTQLV-----SRFPLMPHP 535 (602)
Q Consensus 461 ~~~~~~~~v~l~~p~V~~GlliGamlpflFsa~tm~AVg~aA~~mVeEVRRQFreipGi~eg~~kP-----V~I~T~~Al 535 (602)
++++++..+||.||+|++|+|+|+|+|||||+++|+||||+|++|||||||||||||||||||+|| ||||||+||
T Consensus 560 ~~~~~~~~~~l~~P~Vl~GlliG~mlpflFsa~tm~AVg~AA~~mV~EVRRQFreipGImeg~~kPDY~rcV~I~T~aAl 639 (766)
T 4a01_A 560 VSRASITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASI 639 (766)
T ss_dssp HHHTTCSCCBSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTTTSSCCCHHHHHHHHHHHHH
T ss_pred HHHhccceeecCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCChHHHHHHHHHHHH
Confidence 999998899999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred hhhcchhhHHHHhHHHHHhhhcccccc----ceeeecccccccccccccchhhhhhcCCCccccccccccC
Q 040141 536 EKMIPQGALVILTPLIAGTLFGVETLA----GSLVSGVQFVQLFPFFFSPHVAISASNTGGAWDNAKKYIE 602 (602)
Q Consensus 536 keMi~Pgllail~Pi~vG~l~G~~al~----G~lvsG~~~~~~f~~f~~~~lAi~m~NaGGAWDNAKKyIE 602 (602)
||||+|+++++++|+++|++||+++|+ |+++||++ ||+||+|+||||||||||||
T Consensus 640 keMi~Pgllav~~Pi~vG~~lG~~al~G~L~G~~vsGv~------------~Ai~maNaGGAWDNAKKyIE 698 (766)
T 4a01_A 640 KEMIPPGALVMLTPLVVGILFGVETLSGVLAGSLVSGVQ------------IAISASNTGGAWDNAKKYIE 698 (766)
T ss_dssp HHTHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH------------HHHHHhccchhHHhHHHHHH
Confidence 999999999999999999999999998 88899999 99999999999999999998
No 2
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=100.00 E-value=2.4e-180 Score=1490.95 Aligned_cols=525 Identities=34% Similarity=0.554 Sum_probs=461.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhheeccCCCCCCCCCchhhhHHhhhcCCcchhhhHHHHHHHHHHHHhHhHhhhhhc
Q 040141 8 HTQVLTPAAAFIGIGFALILWVLVSKVKISNGAGSNGDDDRLIEEEEAEEGVDSLEAAIKCAEIQNAISVGATSFLFPQY 87 (602)
Q Consensus 8 ~~~~~~~~~~~lgl~fa~~~~~~v~~~~~~~~~~~nG~~~~l~~~~e~~~G~~~~~v~~~m~~Ia~~I~eGA~afL~~qY 87 (602)
....+.+++++++++|++++++||+|+ |+ | |||||||+++|||||++||+|||
T Consensus 11 ~v~~l~~~~~i~~l~~a~~~~~~v~~~-----------------~~----G------~~~M~eIa~~I~eGA~afL~rqy 63 (735)
T 4av3_A 11 YVAALFFLIPLVALGFAAANFAAVVRK-----------------PE----G------TERMKEISSYIRSGADSFLAHET 63 (735)
T ss_dssp CHHHHHHTHHHHHHHHHHHHHHHHHTS-----------------CC-----------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-----------------CC----C------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778899999999999999984 22 8 99999999999999999999999
Q ss_pred eehHHHHHHHHHHHHHHhhcccCCCCCCCCCccCCCcccccccchhhHHHHHHHHHHHHHHhhhhhhcchhhhhhhhhHH
Q 040141 88 KYLSVVMGVFSTIIFLFQGSVKGFSTKHEPCTYNTGIMCKPALVNAIFSTIAFLLGALTSTLSGFLGMKITTYANARTTL 167 (602)
Q Consensus 88 k~i~~~~~v~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~taiaFllGa~~S~laGyiGM~iAt~aN~Rta~ 167 (602)
|++++|.++++++++++.+ |+++++|++|++||.+|||+|||+|||||+|||+
T Consensus 64 k~i~~~~vv~~~ll~~~~~---------------------------~~~ai~Fl~Ga~~S~~aGyiGM~vAt~ANvRTA~ 116 (735)
T 4av3_A 64 KAIFKVAIVIAILLMIFTT---------------------------WQTGVAFLLGAVMSASAGIVGMKMATRANVRVAE 116 (735)
T ss_dssp HHHHHHHHHHHHHHHHHTC---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh---------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887544 5899999999999999999999999999999999
Q ss_pred HHhc--ChhHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhccCC-------------cchhhhhhhhhcccchhHHH
Q 040141 168 EARK--GVSKAFITAFRARAVMGLLLAANCLLVLYVSINLFKLYYDD-------------DWEGLYESITGYDLSGSSMA 232 (602)
Q Consensus 168 AA~~--~~~~al~vAfrgGaVmGl~vvglgLl~l~~~~~~~~~~~~~-------------~~~~~~~~l~Gfg~GaS~iA 232 (602)
|||+ ++++||++|||||+||||+|+|++|++++++|++|..++++ ++.+.++++.||+||||++|
T Consensus 117 AA~~s~~l~~aL~vAFrgGaVmGl~vvgl~Llgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Gfg~GaS~iA 196 (735)
T 4av3_A 117 AARTTKKIGPALKVAYQGGSVMGLSVGGFALLGLVLVYLIFGKWMGQVDNLNIYTNWLGINFVPFAMTVSGYALGCSIIA 196 (735)
T ss_dssp HTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHCSCEECTTSCEECHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCCccHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccchhhhHHHhhhchhHHHHH
Confidence 9984 59999999999999999999999999999999998643321 12344678999999999999
Q ss_pred HHHHhcCcccccchh----------------------hhhcccCCccccccccccchhhhHH------------------
Q 040141 233 LFGRVGGGIYTKAVD----------------------VIADNVGYNVGEIAGMGFDLFGSYA------------------ 272 (602)
Q Consensus 233 LFaRvGGGIyTKAAD----------------------vIADnVGDNVGD~AGmgADLFESy~------------------ 272 (602)
||+|||||||||||| ||||||||||||||||||||||||+
T Consensus 197 LFaRvGGGIyTKaADVGADLVGKVEagIPEDDPRNPAvIADNVGDNVGDvAGMgADLFESY~~sivAamvL~~~~~~~~~ 276 (735)
T 4av3_A 197 MFDRVGGGVYTKAADMAADLVGKTELNLPEDDPRNPATIADNVGDNVGDVAGLGADLLESFVGAIVSSIILASYMFPIYV 276 (735)
T ss_dssp HHHHHTHHHHHHHHHHHHTTSCC-----------CCTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTE
T ss_pred HHHHHcCcceeccccccchhhhhhhcCCCCCCCCCCchhhhhcccccccccccccchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999 9999999999999999999999999
Q ss_pred ------------------------HHHhhhhHhhhhhheeeeeecccc-ccchHHHHHHHHHHHHHHHHHHHHh--hh--
Q 040141 273 ------------------------VILSMGIVVCMITTLFATDLFQIK-SVSEIELSFKRQLLISTIFDDCWHC--HL-- 323 (602)
Q Consensus 273 ------------------------lisa~gi~~sii~~~~~~~~~~~~-~~~~~~~aL~~g~~is~~l~~v~~~--~~-- 323 (602)
+++++|+++|++++++ ++.+ ++++++++|++++|.+++++++..+ .+
T Consensus 277 ~~~g~~~~~~~~~~~~~~~~~~Pl~i~~~gii~SiiG~~~----v~~~~~~~~~~~~l~~~~~~s~~~s~i~~~~~~~~~ 352 (735)
T 4av3_A 277 QKIGENLVHQVPKETIQALISYPIFFALVGLGCSMLGILY----VIVKKPSDNPQRELNISLWTSALLTVVLTAFLTYFY 352 (735)
T ss_dssp EEETTEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhe----eeecccccchhHHHhhhHHhhHHHHHHHHHHHHHHH
Confidence 1234456666666644 4444 4567999999999999999988722 10
Q ss_pred ------------hcchhHHHHHHHHHHHHHHHHHHhhhhccCCcccc--ccccccCcCchhHHHhhhhhhhhhhhHHHHH
Q 040141 324 ------------ASNSRHLFFCVATGLWAGLVIVYTTEYYTSNAYSA--GLADSYKRGASTNVIFDLALGYKSVIIPIFA 389 (602)
Q Consensus 324 ------------~~~~~~~f~~~~~Gl~~g~li~~~TeYyTs~~y~P--~IA~as~tG~ATnII~GlavGm~St~~Pvl~ 389 (602)
...+|++|+|+++|+++|++|+++||||||++||| +|||+|+||||||||+||++|||||++|+++
T Consensus 353 l~~~~~~~~~~~~~~~~~~f~~~~iGlv~g~lI~~iTEYYTs~~~~PVr~IA~aS~TG~ATnII~GLavGm~St~~pvl~ 432 (735)
T 4av3_A 353 LKDLQGLDVLGFRFGAISPWFSAIIGIFSGILIGFWAEYYTSYRYKPTQFLGKSSIEGTGMVISNGLSLGMKSVFPPTLT 432 (735)
T ss_dssp HTTCSSHHHHTCTTGGGHHHHHHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHGGGCHHHHHHHHHHHHHHHTHHHHHH
T ss_pred hhhhhhcccccccccchHHHHHHHHHHHHHHHHHHheeeecCCCCchHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 12357899999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhheeecccccccCcchhhhhhc-----------------------Ccchh
Q 040141 390 IAVAAYASFSLAAMYGIAVAALGMLSTIATRLTIDAYGPISGIAGGIAEMAL-----------------------HGFAI 446 (602)
Q Consensus 390 I~~ai~~sy~l~GlyGiAiAa~GMLst~g~~la~DayGPIaDNAGGIaEMs~-----------------------KGfAI 446 (602)
|+++|+.||+++||||+|+|++|||||+++++++|+||||+||||||+|||+ |||||
T Consensus 433 I~~~I~~s~~~aGlyGiaiAa~GMLst~gi~lAvDayGPIaDNAGGIAEMs~l~~eVR~~TD~LDavGNTTkAi~KGfAI 512 (735)
T 4av3_A 433 LVLGILFADYFAGLYGVAIAALGMLSFVATSVSVDSYGPIADNAGGISEMCELDPEVRKITDHLDAVGNTTAAIGKGFAI 512 (735)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccceEeeecccCccCCccchHHHccCChHHHHhhhccccccccccccccchhH
Confidence 9999999999999999999999999999999999999999999999999998 99999
Q ss_pred HHHHHHHHHHHHHHHhhh-----------CCceeecCCchhHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHhhccc
Q 040141 447 RSAAVVSLALFRAFVSQA-----------GIETVNLLTPKAFVGLIVGAMLPCWFSSTTMKSVGSIALKMVEEVRRHFNT 515 (602)
Q Consensus 447 GSAaL~alaLF~ay~~~~-----------~~~~v~l~~p~V~~GlliGamlpflFsa~tm~AVg~aA~~mVeEVRRQFre 515 (602)
|||+|+||+||++|+.+. ....+||.||+|++|+|+|+|+|||||+++|+||||+|++|||||||||||
T Consensus 513 GSAaL~AlaLfaay~~~~~~~~~~~~~~~~~~~~~l~~P~VlvGlliGgmlpflFsaltm~AVgrAA~~mV~EVRRQFre 592 (735)
T 4av3_A 513 GSAIFAALSLFASYMFSQISPSDIGKPPSLVLLLNMLDARVIAGALLGAAITYYFSGYLISAVTKAAMKMVDEIRRQARE 592 (735)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGSSSCGGGTSCCBTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999998542 123599999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccc-----ccccCCcchhhhcchhhHHHHhHHHHHhhhcccccc----ceeeecccccccccccccchhhhh
Q 040141 516 IPGQNQTTQLV-----SRFPLMPHPEKMIPQGALVILTPLIAGTLFGVETLA----GSLVSGVQFVQLFPFFFSPHVAIS 586 (602)
Q Consensus 516 ipGi~eg~~kP-----V~I~T~~AlkeMi~Pgllail~Pi~vG~l~G~~al~----G~lvsG~~~~~~f~~f~~~~lAi~ 586 (602)
||||||||+|| ||||||+||||||+|++|++++|+++|+++|+++|+ |.+++|++ ||+|
T Consensus 593 ipGimeg~~kPdy~~cV~I~T~~AlkeMi~p~~l~v~~P~~vg~~~g~~~l~g~L~g~~v~G~~------------~Ai~ 660 (735)
T 4av3_A 593 IPGLLEGKAKPDYNRCIEITSDNALKQMGYPAFIAILTPLVTGFLLGAEFVGGVLIGTVLSGAM------------LAIL 660 (735)
T ss_dssp ------------CHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH------------HHHH
T ss_pred CCCcccCCCCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------------HHHH
Confidence 99999999999 999999999999999999999999999999999998 78888888 9999
Q ss_pred hcCCCccccccccccC
Q 040141 587 ASNTGGAWDNAKKYIE 602 (602)
Q Consensus 587 m~NaGGAWDNAKKyIE 602 (602)
|+|+||||||||||||
T Consensus 661 m~n~GGAWDNAKK~iE 676 (735)
T 4av3_A 661 TANSGGAWDNAKKYLE 676 (735)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhcCccHHhhhHHhhc
Confidence 9999999999999998
No 3
>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex, frizzled, fatty acylation, glycosylation, signaling protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus laevis}
Probab=36.32 E-value=21 Score=36.93 Aligned_cols=23 Identities=26% Similarity=0.117 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHhhcccC
Q 040141 494 TMKSVGSIALKMVEEVRRHFNTI 516 (602)
Q Consensus 494 tm~AVg~aA~~mVeEVRRQFrei 516 (602)
.|.+|+++|..-|+|++.|||..
T Consensus 18 ~~~~v~~Ga~~~i~ECq~QFr~~ 40 (316)
T 4f0a_B 18 YSASVAVGAQNGIEECKYQFAWE 40 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Confidence 58999999999999999999953
No 4
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.25 E-value=32 Score=28.91 Aligned_cols=16 Identities=19% Similarity=0.719 Sum_probs=14.3
Q ss_pred HHHHHHHHhhcccCCC
Q 040141 503 LKMVEEVRRHFNTIPG 518 (602)
Q Consensus 503 ~~mVeEVRRQFreipG 518 (602)
++|++|+|+.|-|+|-
T Consensus 11 ~qvfheLkQrFPEvPd 26 (75)
T 2dae_A 11 FQVLHDLRQKFPEVPE 26 (75)
T ss_dssp HHHHHHHHHHSSSSCH
T ss_pred HHHHHHHHHhcccCcH
Confidence 6899999999999884
No 5
>2kyg_C Protein CBFA2T1; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=23.55 E-value=41 Score=24.77 Aligned_cols=14 Identities=36% Similarity=0.375 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhhc
Q 040141 500 SIALKMVEEVRRHF 513 (602)
Q Consensus 500 ~aA~~mVeEVRRQF 513 (602)
|-|.+-|+||+||-
T Consensus 18 kKaeeavnevkrQa 31 (38)
T 2kyg_C 18 KKAEEAVNEVKRQA 31 (38)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56788899999993
No 6
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=19.82 E-value=25 Score=23.50 Aligned_cols=11 Identities=27% Similarity=0.718 Sum_probs=9.3
Q ss_pred HHHHHHhhccc
Q 040141 505 MVEEVRRHFNT 515 (602)
Q Consensus 505 mVeEVRRQFre 515 (602)
.+|++|+||.+
T Consensus 6 ~~e~ik~q~~~ 16 (26)
T 1oef_A 6 LVEDMQRQWAG 16 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 57999999975
No 7
>2o1k_A NS28, non-structural glycoprotein NSP4; rotavirus enterotoxin, nonstructural protein, tetramer coiled-coil, virulence, viral protein; 1.67A {Simian rotavirus A} PDB: 2o1j_A 1g1j_A* 1g1i_A* 3miw_B
Probab=18.72 E-value=51 Score=25.88 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhhcccC
Q 040141 500 SIALKMVEEVRRHFNTI 516 (602)
Q Consensus 500 ~aA~~mVeEVRRQFrei 516 (602)
+-+.++|+|.|||.+-|
T Consensus 3 ~~mdrivkemrrQl~mI 19 (52)
T 2o1k_A 3 KQMDRVVKEMRRQLEMI 19 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34678999999998754
No 8
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=15.05 E-value=2.4e+02 Score=23.72 Aligned_cols=39 Identities=10% Similarity=0.180 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHhHh----HhhhhhceehHHHHHHHHHHHHH
Q 040141 65 AIKCAEIQNAISVGAT----SFLFPQYKYLSVVMGVFSTIIFL 103 (602)
Q Consensus 65 ~~~m~~Ia~~I~eGA~----afL~~qYk~i~~~~~v~~~ll~~ 103 (602)
++.+++-|+.-+..|. .+.-+.||+..++.+++.+++++
T Consensus 42 t~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il~i 84 (91)
T 3hd7_A 42 ADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILII 84 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444554444 24556678776666665555544
No 9
>2ifo_A Inovirus; helical virus; NMR {Filamentous phage} SCOP: h.1.4.1
Probab=13.79 E-value=2.1e+02 Score=22.01 Aligned_cols=27 Identities=7% Similarity=0.172 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040141 7 GHTQVLTPAAAFIGIGFALILWVLVSK 33 (602)
Q Consensus 7 ~~~~~~~~~~~~lgl~fa~~~~~~v~~ 33 (602)
..+........++++..++..|+||+|
T Consensus 18 a~t~i~~IG~aVLgV~v~i~v~k~IRr 44 (46)
T 2ifo_A 18 AAGPIAAIGGAVLTVMVGIKVYKWVRR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455667788999999999999988
No 10
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=11.84 E-value=9e+02 Score=25.47 Aligned_cols=18 Identities=22% Similarity=0.073 Sum_probs=13.9
Q ss_pred ccCcCchhHHHhhhhhhh
Q 040141 363 SYKRGASTNVIFDLALGY 380 (602)
Q Consensus 363 as~tG~ATnII~GlavGm 380 (602)
..-|-.+|.+++||+.|=
T Consensus 352 n~Gtq~~t~~ir~la~~~ 369 (473)
T 2zy9_A 352 NTGNQSATLIIRALATRD 369 (473)
T ss_dssp HHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHhcCC
Confidence 333457899999999994
Done!