Query 040141
Match_columns 602
No_of_seqs 136 out of 745
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 08:24:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040141.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040141hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jhfa1 a.4.5.2 (A:2-72) LexA 13.9 22 0.0016 26.8 0.5 23 343-365 10-35 (71)
2 d1a6qa1 a.159.1.1 (A:297-368) 7.5 52 0.0038 25.4 0.6 9 238-246 52-60 (72)
3 d1a8ya3 c.47.1.3 (A:229-347) C 7.1 1.2E+02 0.009 25.3 2.8 21 499-519 34-54 (119)
4 d1b6aa1 a.4.5.25 (A:375-448) M 6.6 1.2E+02 0.0091 22.7 2.4 18 500-517 23-40 (74)
5 d2joea1 d.371.1.1 (A:2-131) Hy 6.1 1.3E+02 0.0098 25.3 2.6 40 500-539 49-96 (130)
6 d2vv5a3 f.34.1.1 (A:27-112) Me 5.7 3.5E+02 0.025 19.8 4.7 18 17-34 8-25 (86)
7 d1ip9a_ d.15.2.2 (A:) Bud emer 5.6 78 0.0057 24.4 0.6 37 503-539 35-74 (85)
8 d1iwga3 d.58.44.1 (A:567-673) 5.6 1.1E+02 0.0083 23.6 1.7 19 501-519 77-95 (107)
9 d2pila_ d.24.1.1 (A:) Pilin Gc 5.4 5E+02 0.036 19.4 5.8 49 12-82 6-54 (158)
10 d1a5ta1 a.80.1.1 (A:208-330) d 5.3 1E+02 0.0074 25.5 1.3 23 498-520 78-100 (123)
No 1
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=13.90 E-value=22 Score=26.79 Aligned_cols=23 Identities=9% Similarity=0.114 Sum_probs=19.5
Q ss_pred HHHHhhhhccCCcccc---ccccccC
Q 040141 343 VIVYTTEYYTSNAYSA---GLADSYK 365 (602)
Q Consensus 343 li~~~TeYyTs~~y~P---~IA~as~ 365 (602)
+.-++.+||..+.|.| +|+++..
T Consensus 10 vL~~I~~~~~~~G~~Ps~rei~~~~g 35 (71)
T d1jhfa1 10 VFDLIRDHISQTGMPPTRAEIAQRLG 35 (71)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHcC
Confidence 4678999999999999 8888654
No 2
>d1a6qa1 a.159.1.1 (A:297-368) Protein serine/threonine phosphatase 2C, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.52 E-value=52 Score=25.42 Aligned_cols=9 Identities=33% Similarity=0.553 Sum_probs=5.6
Q ss_pred cCcccccch
Q 040141 238 GGGIYTKAV 246 (602)
Q Consensus 238 GGGIyTKAA 246 (602)
|||+|.|.+
T Consensus 52 GGGL~sK~~ 60 (72)
T d1a6qa1 52 GGELASKRN 60 (72)
T ss_dssp TTGGGGGHH
T ss_pred CccHHHHHH
Confidence 566666654
No 3
>d1a8ya3 c.47.1.3 (A:229-347) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=7.05 E-value=1.2e+02 Score=25.28 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhhcccCCCC
Q 040141 499 GSIALKMVEEVRRHFNTIPGQ 519 (602)
Q Consensus 499 g~aA~~mVeEVRRQFreipGi 519 (602)
|+.=.++++||-|+.+++|++
T Consensus 34 G~eFl~ilk~vA~~nt~n~~L 54 (119)
T d1a8ya3 34 GYEFLEILKSVAQDNTDNPDL 54 (119)
T ss_dssp HHHHHHHHHHHHHHSTTCSSC
T ss_pred HHHHHHHHHHHHHHcCcCCCc
Confidence 667789999999999999995
No 4
>d1b6aa1 a.4.5.25 (A:375-448) Methionine aminopeptidase, insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.61 E-value=1.2e+02 Score=22.69 Aligned_cols=18 Identities=11% Similarity=0.348 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhhcccCC
Q 040141 500 SIALKMVEEVRRHFNTIP 517 (602)
Q Consensus 500 ~aA~~mVeEVRRQFreip 517 (602)
++|.++.+||++.|+..|
T Consensus 23 ~~ar~lL~~I~~~f~tLP 40 (74)
T d1b6aa1 23 PRTKHLLNVINENFGTLA 40 (74)
T ss_dssp HHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHCCCCC
Confidence 568899999999998665
No 5
>d2joea1 d.371.1.1 (A:2-131) Hypothetical lipoprotein YehR {Escherichia coli [TaxId: 562]}
Probab=6.13 E-value=1.3e+02 Score=25.32 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhcccCCCCCCC---cccc----ccc-cCCcchhhhc
Q 040141 500 SIALKMVEEVRRHFNTIPGQNQT---TQLV----SRF-PLMPHPEKMI 539 (602)
Q Consensus 500 ~aA~~mVeEVRRQFreipGi~eg---~~kP----V~I-~T~~AlkeMi 539 (602)
..|.+|+++..++|+.|||+-+- +.+- |+| -+++.++++.
T Consensus 49 eeakk~l~~~~~~yk~i~Gv~~k~~ykd~ka~E~v~IDy~kad~~~l~ 96 (130)
T d2joea1 49 EDAAKTLEPLSAKYKNIAGVEEKLTYTDTYAQENVTIDMEKVDFKALQ 96 (130)
T ss_dssp HHHHHHHHHHHTTTTTSSSCEEEEEECSSEEEEEEEEETTSCCHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEecCceEEEEEEecccccCHHHHh
Confidence 45899999999999999999653 2222 555 4566777764
No 6
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=5.70 E-value=3.5e+02 Score=19.81 Aligned_cols=18 Identities=28% Similarity=0.250 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHhhe
Q 040141 17 AFIGIGFALILWVLVSKV 34 (602)
Q Consensus 17 ~~lgl~fa~~~~~~v~~~ 34 (602)
+++-+..+++..++++|.
T Consensus 8 ~l~il~i~~~i~~~i~~~ 25 (86)
T d2vv5a3 8 ALAIIIVGLIIARMISNA 25 (86)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455556666666663
No 7
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.59 E-value=78 Score=24.38 Aligned_cols=37 Identities=11% Similarity=0.044 Sum_probs=27.0
Q ss_pred HHHHHHHHhhcccCCCCCCCcccc---ccccCCcchhhhc
Q 040141 503 LKMVEEVRRHFNTIPGQNQTTQLV---SRFPLMPHPEKMI 539 (602)
Q Consensus 503 ~~mVeEVRRQFreipGi~eg~~kP---V~I~T~~AlkeMi 539 (602)
.+..+||++.|+-.+=.+.++... |.|.+..-|+|++
T Consensus 35 ~dL~~kI~~rf~~~~~~lkY~Dedgd~v~i~sD~Dl~~ai 74 (85)
T d1ip9a_ 35 KELRSKIAPRIDTDNFKLQTKLFDGSGEEIKTDSQVSNII 74 (85)
T ss_dssp HHHHHHHHHHHTSSCEEEEECCSSSCCSCCCSHHHHHHHH
T ss_pred HHHHHHHHHHhCCCceEEEEEcCCCCEEEEeCHHHHHHHH
Confidence 356899999997544455565544 8899988888765
No 8
>d1iwga3 d.58.44.1 (A:567-673) Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains {Escherichia coli [TaxId: 562]}
Probab=5.58 E-value=1.1e+02 Score=23.57 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhhcccCCCC
Q 040141 501 IALKMVEEVRRHFNTIPGQ 519 (602)
Q Consensus 501 aA~~mVeEVRRQFreipGi 519 (602)
...++++++|++|+.+||.
T Consensus 77 s~~~i~~~l~~~~~~i~~a 95 (107)
T d1iwga3 77 KVEAITMRATRAFSQIKDA 95 (107)
T ss_dssp SHHHHHHHHHHHHHHSCSS
T ss_pred CHHHHHHHHHHHHcCCCCe
Confidence 5677777777777777765
No 9
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=5.44 E-value=5e+02 Score=19.44 Aligned_cols=49 Identities=16% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhheeccCCCCCCCCCchhhhHHhhhcCCcchhhhHHHHHHHHHHHHhHhHh
Q 040141 12 LTPAAAFIGIGFALILWVLVSKVKISNGAGSNGDDDRLIEEEEAEEGVDSLEAAIKCAEIQNAISVGATSF 82 (602)
Q Consensus 12 ~~~~~~~lgl~fa~~~~~~v~~~~~~~~~~~nG~~~~l~~~~e~~~G~~~~~v~~~m~~Ia~~I~eGA~af 82 (602)
|.+++.++|++-++-+-.+.+.+ ++.+..+- ...|+++..+++.-+...
T Consensus 6 LlVViaIIgILaaia~P~~~~~~----------------~~a~~~~~------~~~l~~i~~~~~~~~~~~ 54 (158)
T d2pila_ 6 LMIVIAIVGILAAVALPAYQDYT----------------ARAQVSEA------ILLAEGQKSAVTEYYLNH 54 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHH------HHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHH------HHHHHHHHHHHHHHHHHc
No 10
>d1a5ta1 a.80.1.1 (A:208-330) delta prime subunit {Escherichia coli [TaxId: 562]}
Probab=5.34 E-value=1e+02 Score=25.52 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhhcccCCCCC
Q 040141 498 VGSIALKMVEEVRRHFNTIPGQN 520 (602)
Q Consensus 498 Vg~aA~~mVeEVRRQFreipGi~ 520 (602)
.-.+..+-+.++|+|+.++||+-
T Consensus 78 ~L~~~~~~~~~~r~~L~~~~~lN 100 (123)
T d1a5ta1 78 RLQAILGDVCHIREQLMSVTGIN 100 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHHHHHHHhCCCcC
Confidence 33455667888999999888873
Done!