BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040143
(232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DKH|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, In Complex With The Substrate
pdb|2DKI|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, Under Pressure Of Xenon Gas (12
Atm)
Length = 639
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 151 RMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEF-WDTGNQTGYVEIFPR----LVE 205
R V R+IG ++ G + + ++ L +D P++ + ++ G V I PR LV
Sbjct: 210 RSNVRRAIGRQLVGDSANQAWGVMDVLAVTDFPDVRYKVAIQSEQGNVLIIPREGGHLVR 269
Query: 206 LYIE 209
Y+E
Sbjct: 270 FYVE 273
>pdb|1PBG|A Chain A, The Three-Dimensional Structure Of 6-Phospho-Beta
Galactosidase From Lactococcus Lactis
pdb|1PBG|B Chain B, The Three-Dimensional Structure Of 6-Phospho-Beta
Galactosidase From Lactococcus Lactis
pdb|3PBG|A Chain A, 6-Phospho-Beta-Galactosidase Form-C
pdb|3PBG|B Chain B, 6-Phospho-Beta-Galactosidase Form-C
Length = 468
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 171 FQSLETLCFSDLPELEFWDTGNQTG 195
F CF + PE+ +W T N+ G
Sbjct: 138 FIDYAAFCFEEFPEVNYWTTFNEIG 162
>pdb|4PBG|A Chain A, 6-Phospho-Beta-Galactosidase Form-Cst
pdb|4PBG|B Chain B, 6-Phospho-Beta-Galactosidase Form-Cst
Length = 468
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 171 FQSLETLCFSDLPELEFWDTGNQTG 195
F CF + PE+ +W T N+ G
Sbjct: 138 FIDYAAFCFEEFPEVNYWTTFNEIG 162
>pdb|2PBG|A Chain A, 6-Phospho-Beta-D-Galactosidase Form-B
Length = 468
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 171 FQSLETLCFSDLPELEFWDTGNQTG 195
F CF + PE+ +W T N+ G
Sbjct: 138 FIDYAAFCFEEFPEVNYWTTFNEIG 162
>pdb|2D5V|A Chain A, Crystal Structure Of Hnf-6alpha Dna-Binding Domain In
Complex With The Ttr Promoter
pdb|2D5V|B Chain B, Crystal Structure Of Hnf-6alpha Dna-Binding Domain In
Complex With The Ttr Promoter
Length = 164
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 88 DMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGC 129
D+L+ KL+ R + R+ WL +P F M L+L C
Sbjct: 41 DLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAAC 82
>pdb|1S7E|A Chain A, Solution Structure Of Hnf-6
Length = 147
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 88 DMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGC 129
D+L+ KL+ R + R+ WL +P F M L+L C
Sbjct: 39 DLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAAC 80
>pdb|3TIA|A Chain A, Crystal Structure Of 1957 Pandemic H2n2 Neuraminidase
Complexed With Laninamivir
pdb|3TIA|B Chain B, Crystal Structure Of 1957 Pandemic H2n2 Neuraminidase
Complexed With Laninamivir
pdb|3TIA|C Chain C, Crystal Structure Of 1957 Pandemic H2n2 Neuraminidase
Complexed With Laninamivir
pdb|3TIA|D Chain D, Crystal Structure Of 1957 Pandemic H2n2 Neuraminidase
Complexed With Laninamivir
pdb|3TIB|A Chain A, Crystal Structure Of 1957 Pandemic H2n2 Neuraminidase
Complexed With Laninamivir Octanoate
pdb|3TIB|B Chain B, Crystal Structure Of 1957 Pandemic H2n2 Neuraminidase
Complexed With Laninamivir Octanoate
pdb|3TIB|C Chain C, Crystal Structure Of 1957 Pandemic H2n2 Neuraminidase
Complexed With Laninamivir Octanoate
pdb|3TIB|D Chain D, Crystal Structure Of 1957 Pandemic H2n2 Neuraminidase
Complexed With Laninamivir Octanoate
pdb|3TIC|A Chain A, Crystal Structure Of 1957 Pandemic H2n2 Neuraminidase
Complexed With Zanamivir
pdb|3TIC|B Chain B, Crystal Structure Of 1957 Pandemic H2n2 Neuraminidase
Complexed With Zanamivir
pdb|3TIC|C Chain C, Crystal Structure Of 1957 Pandemic H2n2 Neuraminidase
Complexed With Zanamivir
pdb|3TIC|D Chain D, Crystal Structure Of 1957 Pandemic H2n2 Neuraminidase
Complexed With Zanamivir
Length = 469
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 24 SGLKDLRNLTFLRGKLCIS--RLENANDSWDAREASLGDKKGLEELSL--GWGSPFHSRN 79
S + RN RG + +N ND W R S + G E + GW +P +S++
Sbjct: 332 SSNSNCRNPNNERGTQGVKGWAFDNGNDLWMGRTISKESRSGYETFKVIGGWSTP-NSKS 390
Query: 80 EIAEEKVLD 88
++ + ++D
Sbjct: 391 QVNRQVIVD 399
>pdb|3DRW|A Chain A, Crystal Structure Of A Phosphofructokinase From Pyrococcus
Horikoshii Ot3 With Amp
pdb|3DRW|B Chain B, Crystal Structure Of A Phosphofructokinase From Pyrococcus
Horikoshii Ot3 With Amp
Length = 474
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 53 AREASLGDKKGLEELSLGWGSPFHSRNE 80
A ASLGD +G ++ +G PF+ R+E
Sbjct: 389 AARASLGDIRGPDDYKVGLKVPFNERSE 416
>pdb|1U2X|A Chain A, Crystal Structure Of A Hypothetical Adp-Dependent
Phosphofructokinase From Pyrococcus Horikoshii Ot3
pdb|1U2X|B Chain B, Crystal Structure Of A Hypothetical Adp-Dependent
Phosphofructokinase From Pyrococcus Horikoshii Ot3
Length = 474
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 53 AREASLGDKKGLEELSLGWGSPFHSRNE 80
A ASLGD +G ++ +G PF+ R+E
Sbjct: 389 AARASLGDIRGPDDYKVGLKVPFNERSE 416
>pdb|4H52|A Chain A, Wild-type Influenza N2 Neuraminidase Covalent Complex With
3-fluoro- Neu5ac
pdb|4H52|B Chain B, Wild-type Influenza N2 Neuraminidase Covalent Complex With
3-fluoro- Neu5ac
Length = 388
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 24 SGLKDLRNLTFLRGKLCIS--RLENANDSWDAREASLGDKKGLEELSL--GWGSPFHSRN 79
S + RN RG + +N ND W R S + G E + GW +P +S++
Sbjct: 251 SSNSNCRNPNNERGTQGVKGWAFDNGNDLWMGRTISKESRSGYETFKVIGGWSTP-NSKS 309
Query: 80 EIAEEKVLD 88
++ + ++D
Sbjct: 310 QVNRQVIVD 318
>pdb|4H53|A Chain A, Influenza N2-tyr406asp Neuraminidase In Complex With
Beta-neu5ac
pdb|4H53|B Chain B, Influenza N2-tyr406asp Neuraminidase In Complex With
Beta-neu5ac
pdb|4H53|C Chain C, Influenza N2-tyr406asp Neuraminidase In Complex With
Beta-neu5ac
pdb|4H53|D Chain D, Influenza N2-tyr406asp Neuraminidase In Complex With
Beta-neu5ac
Length = 388
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 24 SGLKDLRNLTFLRGKLCIS--RLENANDSWDAREASLGDKKGLEELSL--GWGSPFHSRN 79
S + RN RG + +N ND W R S + G E + GW +P +S++
Sbjct: 251 SSNSNCRNPNNERGTQGVKGWAFDNGNDLWMGRTISKESRSGYETFKVIGGWSTP-NSKS 309
Query: 80 EIAEEKVLD 88
++ + ++D
Sbjct: 310 QVNRQVIVD 318
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,920,173
Number of Sequences: 62578
Number of extensions: 279562
Number of successful extensions: 553
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 546
Number of HSP's gapped (non-prelim): 11
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)