Query 040143
Match_columns 232
No_of_seqs 137 out of 1601
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 05:33:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040143.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040143hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.4 7.9E-13 1.7E-17 124.9 12.6 105 119-231 778-901 (1153)
2 PLN00113 leucine-rich repeat r 99.4 1E-12 2.3E-17 122.6 8.3 61 6-72 138-198 (968)
3 PLN00113 leucine-rich repeat r 99.4 1.6E-12 3.5E-17 121.4 9.1 60 6-73 116-175 (968)
4 PLN03210 Resistant to P. syrin 99.3 9.9E-12 2.1E-16 117.5 11.5 53 171-230 801-853 (1153)
5 KOG0444 Cytoskeletal regulator 98.7 8.9E-10 1.9E-14 94.8 -2.9 109 95-219 269-379 (1255)
6 KOG4194 Membrane glycoprotein 98.5 4.7E-08 1E-12 83.6 2.0 79 94-181 173-254 (873)
7 KOG4194 Membrane glycoprotein 98.5 1.4E-08 3E-13 86.7 -1.1 124 90-230 289-423 (873)
8 KOG0617 Ras suppressor protein 98.5 2.4E-09 5.2E-14 78.1 -5.4 56 93-151 55-111 (264)
9 KOG0444 Cytoskeletal regulator 98.4 7.7E-09 1.7E-13 89.2 -4.9 67 85-153 117-184 (1255)
10 KOG0617 Ras suppressor protein 98.4 1.2E-08 2.7E-13 74.5 -3.2 128 90-230 29-180 (264)
11 PF14580 LRR_9: Leucine-rich r 98.4 2.5E-07 5.3E-12 69.0 2.9 54 94-151 42-97 (175)
12 cd00116 LRR_RI Leucine-rich re 98.4 9.6E-08 2.1E-12 78.2 0.4 172 28-214 76-262 (319)
13 KOG3207 Beta-tubulin folding c 98.3 1.6E-07 3.4E-12 77.7 1.3 160 58-229 142-332 (505)
14 PRK15386 type III secretion pr 98.2 8.8E-06 1.9E-10 68.2 8.8 28 201-230 156-184 (426)
15 KOG4658 Apoptotic ATPase [Sign 98.1 8.3E-07 1.8E-11 81.6 1.5 191 4-215 591-784 (889)
16 cd00116 LRR_RI Leucine-rich re 98.1 2E-07 4.2E-12 76.4 -2.8 215 4-231 77-315 (319)
17 KOG0472 Leucine-rich repeat pr 98.1 3.8E-08 8.3E-13 80.7 -7.6 115 94-225 183-297 (565)
18 KOG2120 SCF ubiquitin ligase, 98.0 7.9E-08 1.7E-12 76.0 -5.9 160 29-211 206-373 (419)
19 PF13855 LRR_8: Leucine rich r 98.0 1E-05 2.2E-10 49.5 4.4 38 120-159 2-41 (61)
20 KOG4658 Apoptotic ATPase [Sign 98.0 2.5E-06 5.5E-11 78.5 2.3 70 90-159 713-787 (889)
21 KOG3207 Beta-tubulin folding c 98.0 8.3E-07 1.8E-11 73.5 -1.5 89 118-211 245-336 (505)
22 PRK15387 E3 ubiquitin-protein 97.9 3.6E-05 7.8E-10 69.9 7.2 28 202-231 383-410 (788)
23 KOG0618 Serine/threonine phosp 97.9 7.8E-07 1.7E-11 79.8 -3.6 91 118-215 382-490 (1081)
24 PRK15370 E3 ubiquitin-protein 97.8 1.6E-05 3.5E-10 72.1 4.2 120 95-232 242-376 (754)
25 PF14580 LRR_9: Leucine-rich r 97.8 1.3E-06 2.8E-11 65.1 -2.6 107 60-181 40-149 (175)
26 KOG0472 Leucine-rich repeat pr 97.8 3.2E-08 7E-13 81.1 -12.8 118 95-231 161-283 (565)
27 PRK15387 E3 ubiquitin-protein 97.7 0.00014 3.1E-09 66.1 7.8 56 95-158 202-257 (788)
28 PF13855 LRR_8: Leucine rich r 97.7 2.8E-05 6E-10 47.5 2.1 57 94-153 1-60 (61)
29 PRK15370 E3 ubiquitin-protein 97.6 9.9E-05 2.1E-09 67.1 5.6 119 94-231 220-354 (754)
30 KOG0618 Serine/threonine phosp 97.6 7.1E-06 1.5E-10 73.9 -1.9 98 95-209 408-505 (1081)
31 PLN03150 hypothetical protein; 97.6 9.5E-05 2.1E-09 66.3 5.0 88 121-220 420-508 (623)
32 KOG2120 SCF ubiquitin ligase, 97.4 1.1E-05 2.4E-10 64.2 -3.2 140 28-183 229-374 (419)
33 PLN03150 hypothetical protein; 97.4 0.00039 8.3E-09 62.4 6.0 107 96-215 420-529 (623)
34 PRK15386 type III secretion pr 97.2 0.00096 2.1E-08 56.2 6.4 117 86-231 44-164 (426)
35 KOG1259 Nischarin, modulator o 97.2 3.1E-05 6.6E-10 61.8 -2.2 104 93-212 306-410 (490)
36 KOG3665 ZYG-1-like serine/thre 97.0 0.00014 3.1E-09 65.5 -0.2 133 62-210 122-259 (699)
37 COG4886 Leucine-rich repeat (L 97.0 0.0015 3.2E-08 55.3 5.9 60 90-152 159-219 (394)
38 KOG3665 ZYG-1-like serine/thre 96.8 0.00027 5.8E-09 63.8 -0.2 126 94-232 122-259 (699)
39 PF12799 LRR_4: Leucine Rich r 96.8 0.0011 2.3E-08 37.5 2.3 33 119-152 1-34 (44)
40 KOG1259 Nischarin, modulator o 96.8 0.0001 2.2E-09 59.0 -3.0 107 59-183 304-410 (490)
41 PF12799 LRR_4: Leucine Rich r 96.5 0.0014 3.1E-08 37.0 1.2 40 94-136 1-40 (44)
42 KOG3864 Uncharacterized conser 96.1 0.00077 1.7E-08 50.8 -1.3 70 135-212 118-187 (221)
43 KOG1644 U2-associated snRNP A' 96.1 0.02 4.4E-07 43.4 6.0 105 94-211 42-150 (233)
44 COG4886 Leucine-rich repeat (L 96.0 0.0061 1.3E-07 51.6 3.5 130 57-211 158-287 (394)
45 KOG2982 Uncharacterized conser 95.8 0.0072 1.6E-07 48.6 2.4 81 61-152 70-156 (418)
46 KOG1644 U2-associated snRNP A' 95.6 0.016 3.5E-07 43.9 3.8 92 86-181 56-149 (233)
47 KOG0532 Leucine-rich repeat (L 95.6 0.0013 2.8E-08 56.9 -2.3 52 96-150 145-197 (722)
48 KOG0532 Leucine-rich repeat (L 95.3 0.0017 3.7E-08 56.2 -2.7 123 88-230 115-241 (722)
49 PF13504 LRR_7: Leucine rich r 94.6 0.025 5.4E-07 24.8 1.4 17 201-219 1-17 (17)
50 KOG0531 Protein phosphatase 1, 94.6 0.01 2.2E-07 50.8 0.2 108 87-211 88-196 (414)
51 KOG3864 Uncharacterized conser 94.5 0.0035 7.5E-08 47.4 -2.6 83 118-206 124-209 (221)
52 KOG1909 Ran GTPase-activating 94.4 0.0028 6.1E-08 51.7 -3.5 12 200-211 297-308 (382)
53 KOG1909 Ran GTPase-activating 93.8 0.045 9.7E-07 44.9 2.4 117 88-211 151-280 (382)
54 PF00560 LRR_1: Leucine Rich R 93.7 0.033 7.1E-07 26.2 0.9 21 202-224 1-21 (22)
55 KOG4341 F-box protein containi 93.6 0.0025 5.4E-08 53.2 -5.2 64 119-186 164-230 (483)
56 KOG0531 Protein phosphatase 1, 92.3 0.054 1.2E-06 46.3 0.8 97 117-230 93-193 (414)
57 KOG2739 Leucine-rich acidic nu 92.2 0.084 1.8E-06 41.5 1.7 63 91-155 62-129 (260)
58 KOG1947 Leucine rich repeat pr 92.1 0.017 3.7E-07 49.8 -2.5 113 94-215 188-309 (482)
59 KOG2739 Leucine-rich acidic nu 90.9 0.15 3.2E-06 40.2 1.8 109 94-212 43-154 (260)
60 KOG1859 Leucine-rich repeat pr 90.4 0.016 3.5E-07 52.0 -4.2 11 118-128 208-218 (1096)
61 KOG2123 Uncharacterized conser 90.1 0.014 3.1E-07 46.5 -4.4 31 119-150 41-71 (388)
62 KOG4237 Extracellular matrix p 89.9 0.045 9.7E-07 45.8 -1.8 113 94-220 67-181 (498)
63 KOG4237 Extracellular matrix p 89.5 0.14 3.1E-06 42.9 0.7 80 93-181 273-355 (498)
64 KOG1859 Leucine-rich repeat pr 89.1 0.012 2.5E-07 52.9 -6.1 82 58-152 183-264 (1096)
65 smart00367 LRR_CC Leucine-rich 88.8 0.28 6E-06 24.0 1.3 16 200-215 1-16 (26)
66 KOG2982 Uncharacterized conser 88.6 0.089 1.9E-06 42.5 -0.9 41 55-104 90-131 (418)
67 KOG1947 Leucine rich repeat pr 88.6 0.16 3.5E-06 43.8 0.6 64 118-185 242-308 (482)
68 KOG4579 Leucine-rich repeat (L 85.4 0.022 4.8E-07 40.7 -5.3 81 95-183 28-111 (177)
69 KOG2123 Uncharacterized conser 84.9 0.11 2.4E-06 41.6 -2.2 86 5-100 38-123 (388)
70 KOG4341 F-box protein containi 81.8 0.51 1.1E-05 39.9 0.4 44 170-215 370-415 (483)
71 smart00370 LRR Leucine-rich re 81.3 1.3 2.9E-05 21.3 1.7 19 200-220 1-19 (26)
72 smart00369 LRR_TYP Leucine-ric 81.3 1.3 2.9E-05 21.3 1.7 19 200-220 1-19 (26)
73 COG5238 RNA1 Ran GTPase-activa 78.9 1.2 2.5E-05 35.9 1.5 105 25-130 22-131 (388)
74 KOG4579 Leucine-rich repeat (L 68.7 0.87 1.9E-05 32.8 -1.3 65 87-153 46-111 (177)
75 PF13306 LRR_5: Leucine rich r 67.0 24 0.00052 24.1 5.8 10 60-69 10-19 (129)
76 smart00364 LRR_BAC Leucine-ric 62.5 5.3 0.00012 19.6 1.2 18 201-220 2-19 (26)
77 PF13516 LRR_6: Leucine Rich r 54.4 9.3 0.0002 17.8 1.3 15 200-215 1-15 (24)
78 smart00365 LRR_SD22 Leucine-ri 21.8 68 0.0015 15.6 1.3 14 201-215 2-15 (26)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.45 E-value=7.9e-13 Score=124.87 Aligned_cols=105 Identities=26% Similarity=0.380 Sum_probs=70.6
Q ss_pred CccceEEEeCCCCCCCCCC-CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcccccccc-------
Q 040143 119 SNMVTLKLIGCANCTSLPA-VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWDT------- 190 (232)
Q Consensus 119 ~~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~------- 190 (232)
++|++|++++|..+..+|. ++.+++|+.|++++|..++.+|..+ .+++|+.|.+++|..+..++.
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-------~L~sL~~L~Ls~c~~L~~~p~~~~nL~~ 850 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-------NLESLESLDLSGCSRLRTFPDISTNISD 850 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-------CccccCEEECCCCCccccccccccccCE
Confidence 4677788877777777776 8888888888888888888776432 267777777777766544320
Q ss_pred ----c----CcCCccCCCCcccEEeEcCCCCCCCCCCCC---CCCcceEEeC
Q 040143 191 ----G----NQTGYVEIFPRLVELYIEWCPKLSGKLPDH---LPALETLALS 231 (232)
Q Consensus 191 ----~----~~~~~~~~lp~L~~L~l~~c~~l~~~lp~~---l~~L~~L~i~ 231 (232)
+ .++...+.+++|+.|++.+|.++. .+|.. +++|+.+++.
T Consensus 851 L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~ 901 (1153)
T PLN03210 851 LNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFS 901 (1153)
T ss_pred eECCCCCCccChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecC
Confidence 0 011233457888888888888888 67653 4455555543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.38 E-value=1e-12 Score=122.64 Aligned_cols=61 Identities=21% Similarity=0.053 Sum_probs=26.2
Q ss_pred CCCCCCCCCCeEEecCCCCChhhhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEec
Q 040143 6 SPLTRQTLSDFIVGRGIGSGLKDLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWG 72 (232)
Q Consensus 6 ~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 72 (232)
.+++|++|++...... ......++++++|+ .|++.+..-. ...+..++++++|++|+++++
T Consensus 138 ~l~~L~~L~Ls~n~~~-~~~p~~~~~l~~L~-~L~L~~n~l~----~~~p~~~~~l~~L~~L~L~~n 198 (968)
T PLN00113 138 SIPNLETLDLSNNMLS-GEIPNDIGSFSSLK-VLDLGGNVLV----GKIPNSLTNLTSLEFLTLASN 198 (968)
T ss_pred ccCCCCEEECcCCccc-ccCChHHhcCCCCC-EEECccCccc----ccCChhhhhCcCCCeeeccCC
Confidence 4555666543322111 12233455566666 5665432211 111123444555555555444
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.37 E-value=1.6e-12 Score=121.40 Aligned_cols=60 Identities=15% Similarity=-0.022 Sum_probs=30.7
Q ss_pred CCCCCCCCCCeEEecCCCCChhhhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecC
Q 040143 6 SPLTRQTLSDFIVGRGIGSGLKDLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGS 73 (232)
Q Consensus 6 ~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 73 (232)
++++|++|++.......... .+.+++|+ .|++.+..- ....+..++++++|++|+++++.
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p---~~~l~~L~-~L~Ls~n~~----~~~~p~~~~~l~~L~~L~L~~n~ 175 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIP---RGSIPNLE-TLDLSNNML----SGEIPNDIGSFSSLKVLDLGGNV 175 (968)
T ss_pred cCCCCCEEECcCCccccccC---ccccCCCC-EEECcCCcc----cccCChHHhcCCCCCEEECccCc
Confidence 56667776543222211111 13455666 666654321 11223346677888888887663
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.33 E-value=9.9e-12 Score=117.52 Aligned_cols=53 Identities=25% Similarity=0.303 Sum_probs=26.1
Q ss_pred CCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCCCCCCcceEEe
Q 040143 171 FQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPDHLPALETLAL 230 (232)
Q Consensus 171 ~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~~l~~L~~L~i 230 (232)
+++|+.|.+.+|.+++.++ .. ..+++|+.|++++|.++. .+|...++|+.|++
T Consensus 801 L~~L~~L~Ls~C~~L~~LP-----~~-~~L~sL~~L~Ls~c~~L~-~~p~~~~nL~~L~L 853 (1153)
T PLN03210 801 LHKLEHLEIENCINLETLP-----TG-INLESLESLDLSGCSRLR-TFPDISTNISDLNL 853 (1153)
T ss_pred CCCCCEEECCCCCCcCeeC-----CC-CCccccCEEECCCCCccc-cccccccccCEeEC
Confidence 5555555555555554433 11 135566666666665554 44443334444433
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.70 E-value=8.9e-10 Score=94.79 Aligned_cols=109 Identities=19% Similarity=0.286 Sum_probs=73.7
Q ss_pred CCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCC-CCCCCC-CCCCCCCceeeecccccceEeCccccCCCCCccCC
Q 040143 95 NIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCAN-CTSLPA-VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQ 172 (232)
Q Consensus 95 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~-~~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p 172 (232)
+|+.|.++.+....+|..++ .++.|++|+..++.. .+.+|+ +|+|.+|+.+...+ +.++-+|..++- .+
T Consensus 269 ~lEtLNlSrNQLt~LP~avc--KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcR------C~ 339 (1255)
T KOG0444|consen 269 NLETLNLSRNQLTVLPDAVC--KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCR------CV 339 (1255)
T ss_pred hhhhhccccchhccchHHHh--hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhh------hH
Confidence 45555555554555666665 578888888877653 367888 99999999988865 456766655444 67
Q ss_pred ccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCC
Q 040143 173 SLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLP 219 (232)
Q Consensus 173 ~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp 219 (232)
.|+.|.+... .+-. .+..+.-+|-|+.|++..+|++. .-|
T Consensus 340 kL~kL~L~~N-rLiT-----LPeaIHlL~~l~vLDlreNpnLV-MPP 379 (1255)
T KOG0444|consen 340 KLQKLKLDHN-RLIT-----LPEAIHLLPDLKVLDLRENPNLV-MPP 379 (1255)
T ss_pred HHHHhccccc-ceee-----chhhhhhcCCcceeeccCCcCcc-CCC
Confidence 7888888543 2222 22344558889999999888886 443
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.50 E-value=4.7e-08 Score=83.62 Aligned_cols=79 Identities=28% Similarity=0.335 Sum_probs=47.0
Q ss_pred CCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC--CCCCCCCceeeecccccceEe-CccccCCCCCcc
Q 040143 94 TNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRMLVLRSI-GSEICGKDCSTP 170 (232)
Q Consensus 94 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~ 170 (232)
.++++|.+.++....+-.-.. ..|.+|..|.++.+. +..+|. +.+||+|+.|++..+ .++.. ...|. +
T Consensus 173 ~ni~~L~La~N~It~l~~~~F-~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFq------g 243 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHF-DSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQ------G 243 (873)
T ss_pred CCceEEeeccccccccccccc-cccchheeeecccCc-ccccCHHHhhhcchhhhhhcccc-ceeeehhhhhc------C
Confidence 468888877655443321111 135677778887764 566776 777888888888543 33333 22233 3
Q ss_pred CCccceEeccC
Q 040143 171 FQSLETLCFSD 181 (232)
Q Consensus 171 ~p~L~~L~l~~ 181 (232)
+|+|+.|++.+
T Consensus 244 L~Sl~nlklqr 254 (873)
T KOG4194|consen 244 LPSLQNLKLQR 254 (873)
T ss_pred chhhhhhhhhh
Confidence 77777777643
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.50 E-value=1.4e-08 Score=86.74 Aligned_cols=124 Identities=23% Similarity=0.288 Sum_probs=67.1
Q ss_pred CCCCCCCceEEEEeeCCCC--CCCccCCCCCCccceEEEeCCCCCCCCCC--CCCCCCCceeeecccccceEeCccccCC
Q 040143 90 LQPHTNIKKLEITRYSGRK--FPIWLGDPSFSNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRMLVLRSIGSEICGK 165 (232)
Q Consensus 90 l~~~~~L~~L~l~~~~~~~--~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~ 165 (232)
+..++.|+.|+++.+.... .-.|.. -++|+.|+++.+. +..++. +..|..|+.|.++++ .+..+....+
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~Wsf---tqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af-- 361 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSF---TQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAF-- 361 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhh---cccceeEeccccc-cccCChhHHHHHHHhhhhccccc-chHHHHhhHH--
Confidence 3445677777776654433 234532 3578888887754 455654 666677777777553 3333322111
Q ss_pred CCCccCCccceEeccCCcccccccccCcCCcc---CCCCcccEEeEcCCCCCCCCCCC----CCCCcceEEe
Q 040143 166 DCSTPFQSLETLCFSDLPELEFWDTGNQTGYV---EIFPRLVELYIEWCPKLSGKLPD----HLPALETLAL 230 (232)
Q Consensus 166 ~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~---~~lp~L~~L~l~~c~~l~~~lp~----~l~~L~~L~i 230 (232)
.++.+|++|++.+.. + .|+ +.+.. ..+|+|.+|.+.++ +++ .+|. .++.|++|++
T Consensus 362 ---~~lssL~~LdLr~N~-l-s~~---IEDaa~~f~gl~~LrkL~l~gN-qlk-~I~krAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 362 ---VGLSSLHKLDLRSNE-L-SWC---IEDAAVAFNGLPSLRKLRLTGN-QLK-SIPKRAFSGLEALEHLDL 423 (873)
T ss_pred ---HHhhhhhhhcCcCCe-E-EEE---EecchhhhccchhhhheeecCc-eee-ecchhhhccCcccceecC
Confidence 125666666665432 1 233 22111 12677777777766 666 6663 4566666554
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.48 E-value=2.4e-09 Score=78.14 Aligned_cols=56 Identities=18% Similarity=0.274 Sum_probs=31.6
Q ss_pred CCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC-CCCCCCCceeeecc
Q 040143 93 HTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA-VGKLVSLKELTIRR 151 (232)
Q Consensus 93 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~ 151 (232)
+.+|+.|.+.++...++|..+. +++.|++|.+.-+ ++..+|. +|.+|-|+.|++.+
T Consensus 55 l~nlevln~~nnqie~lp~~is--sl~klr~lnvgmn-rl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 55 LKNLEVLNLSNNQIEELPTSIS--SLPKLRILNVGMN-RLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhhhhcccchhhhcChhhh--hchhhhheecchh-hhhcCccccCCCchhhhhhccc
Confidence 3456666655555555665554 4566666665432 3444554 66666666666644
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.41 E-value=7.7e-09 Score=89.15 Aligned_cols=67 Identities=19% Similarity=0.199 Sum_probs=45.3
Q ss_pred HHHhcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC-CCCCCCCceeeecccc
Q 040143 85 KVLDMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA-VGKLVSLKELTIRRML 153 (232)
Q Consensus 85 ~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~~~ 153 (232)
++...+....++-.|.++.+....+|+.+. .+++-|-.|+++.+ +++.+|. +.+|.+|+.|.+++++
T Consensus 117 EvP~~LE~AKn~iVLNLS~N~IetIPn~lf-inLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 117 EVPTNLEYAKNSIVLNLSYNNIETIPNSLF-INLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred hcchhhhhhcCcEEEEcccCccccCCchHH-HhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCCh
Confidence 344445555667777777776666776543 14666777788765 4677777 8888888888887754
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.40 E-value=1.2e-08 Score=74.47 Aligned_cols=128 Identities=24% Similarity=0.266 Sum_probs=88.1
Q ss_pred CCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC-CCCCCCCceeeecccccceEeCccccCCCCC
Q 040143 90 LQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA-VGKLVSLKELTIRRMLVLRSIGSEICGKDCS 168 (232)
Q Consensus 90 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~ 168 (232)
+..+.++..|.++.+.....|.-+. .+.+|+.|.++.++ ++++|. ++.||+|++|.+ +++.+..+|..|.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia--~l~nlevln~~nnq-ie~lp~~issl~klr~lnv-gmnrl~~lprgfg----- 99 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIA--ELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNV-GMNRLNILPRGFG----- 99 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHH--Hhhhhhhhhcccch-hhhcChhhhhchhhhheec-chhhhhcCccccC-----
Confidence 3444667777777766666777666 47899999998764 678887 999999999998 6777777776553
Q ss_pred ccCCccceEeccCCcccccc-cccC-------------------cCCccCCCCcccEEeEcCCCCCCCCCCC---CCCCc
Q 040143 169 TPFQSLETLCFSDLPELEFW-DTGN-------------------QTGYVEIFPRLVELYIEWCPKLSGKLPD---HLPAL 225 (232)
Q Consensus 169 ~~~p~L~~L~l~~~~~l~~~-~~~~-------------------~~~~~~~lp~L~~L~l~~c~~l~~~lp~---~l~~L 225 (232)
+||.|+.|++.+. ++.+- .-|+ .+++.|.+.+|+.|.+.++ .+. ++|. .+.+|
T Consensus 100 -s~p~levldltyn-nl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll-~lpkeig~lt~l 175 (264)
T KOG0617|consen 100 -SFPALEVLDLTYN-NLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLL-SLPKEIGDLTRL 175 (264)
T ss_pred -CCchhhhhhcccc-ccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chh-hCcHHHHHHHHH
Confidence 3999999998653 23221 1011 2335667888888888887 555 6664 34555
Q ss_pred ceEEe
Q 040143 226 ETLAL 230 (232)
Q Consensus 226 ~~L~i 230 (232)
+.|.|
T Consensus 176 relhi 180 (264)
T KOG0617|consen 176 RELHI 180 (264)
T ss_pred HHHhc
Confidence 55554
No 11
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.37 E-value=2.5e-07 Score=68.99 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=13.8
Q ss_pred CCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC-C-CCCCCCceeeecc
Q 040143 94 TNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA-V-GKLVSLKELTIRR 151 (232)
Q Consensus 94 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-l-~~L~~L~~L~l~~ 151 (232)
.+|+.|+++++....+.... .+++|+.|+++.+. +.++.. + ..+|+|++|++.+
T Consensus 42 ~~L~~L~Ls~N~I~~l~~l~---~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKLEGLP---GLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp TT--EEE-TTS--S--TT-------TT--EEE--SS----S-CHHHHHH-TT--EEE-TT
T ss_pred cCCCEEECCCCCCccccCcc---ChhhhhhcccCCCC-CCccccchHHhCCcCCEEECcC
Confidence 45555555544433332211 24555555555442 333322 2 2345555555543
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.35 E-value=9.6e-08 Score=78.18 Aligned_cols=172 Identities=18% Similarity=0.113 Sum_probs=79.9
Q ss_pred hhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCC-CCCceEEEEeeCC
Q 040143 28 DLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPH-TNIKKLEITRYSG 106 (232)
Q Consensus 28 ~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~ 106 (232)
.++++++|+ .+++.+................. ++|++|+++++.... .....+...+... ++|+.|++.++..
T Consensus 76 ~l~~~~~L~-~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~----~~~~~l~~~l~~~~~~L~~L~L~~n~l 149 (319)
T cd00116 76 GLTKGCGLQ-ELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGD----RGLRLLAKGLKDLPPALEKLVLGRNRL 149 (319)
T ss_pred HHHhcCcee-EEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccch----HHHHHHHHHHHhCCCCceEEEcCCCcC
Confidence 345555666 66665433221111111111112 447777776653211 1112222333333 6777777776654
Q ss_pred CC-----CCCccCCCCCCccceEEEeCCCCCC-C---CCC-CCCCCCCceeeecccccceEeCccccCCCCCccCCccce
Q 040143 107 RK-----FPIWLGDPSFSNMVTLKLIGCANCT-S---LPA-VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLET 176 (232)
Q Consensus 107 ~~-----~p~~~~~~~l~~L~~L~l~~c~~~~-~---l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~ 176 (232)
.. ++.++. ..++|++|++++|.... . ++. +..+++|++|++++|. +......... .....+|+|++
T Consensus 150 ~~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~-~~~~~~~~L~~ 225 (319)
T cd00116 150 EGASCEALAKALR--ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALA-ETLASLKSLEV 225 (319)
T ss_pred CchHHHHHHHHHH--hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHH-HHhcccCCCCE
Confidence 41 122222 24567777777765331 1 111 3445678888887663 2211111000 01123677888
Q ss_pred EeccCCcccccccccCcCCccC----CCCcccEEeEcCCCCC
Q 040143 177 LCFSDLPELEFWDTGNQTGYVE----IFPRLVELYIEWCPKL 214 (232)
Q Consensus 177 L~l~~~~~l~~~~~~~~~~~~~----~lp~L~~L~l~~c~~l 214 (232)
|+++++. +.++. +..... ..+.|+.|++.+| ++
T Consensus 226 L~ls~n~-l~~~~---~~~l~~~~~~~~~~L~~L~l~~n-~i 262 (319)
T cd00116 226 LNLGDNN-LTDAG---AAALASALLSPNISLLTLSLSCN-DI 262 (319)
T ss_pred EecCCCc-CchHH---HHHHHHHHhccCCCceEEEccCC-CC
Confidence 8887753 22211 000001 2367888888777 44
No 13
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.6e-07 Score=77.67 Aligned_cols=160 Identities=16% Similarity=0.109 Sum_probs=77.7
Q ss_pred cCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCC-CCCC
Q 040143 58 LGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANC-TSLP 136 (232)
Q Consensus 58 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~-~~l~ 136 (232)
...+++++.|+++.+-. -....+.+-..++++|+.|.++.+...-+-+......+++|+.|.+++|... +++-
T Consensus 142 ~k~~~~v~~LdLS~NL~------~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~ 215 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLF------HNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQ 215 (505)
T ss_pred hhhCCcceeecchhhhH------HhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHH
Confidence 44567777777764410 0122233334456777777776543221111111124667777777777643 3333
Q ss_pred C-CCCCCCCceeeecccccceEeCcc--c--------------cCC---CCCccCCccceEeccCCcccccccccCcCCc
Q 040143 137 A-VGKLVSLKELTIRRMLVLRSIGSE--I--------------CGK---DCSTPFQSLETLCFSDLPELEFWDTGNQTGY 196 (232)
Q Consensus 137 ~-l~~L~~L~~L~l~~~~~l~~~~~~--~--------------~~~---~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~ 196 (232)
+ +..+|+|+.|++..++.+..-..+ + ... ...+.||.|..|.++.+. ..++- .++.
T Consensus 216 ~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~---~~d~ 291 (505)
T KOG3207|consen 216 WILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIA---EPDV 291 (505)
T ss_pred HHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhc---CCCc
Confidence 3 445566666666544211110000 0 000 122447777777766543 11111 1111
Q ss_pred -----cCCCCcccEEeEcCCCCCCCCCCC-----CCCCcceEE
Q 040143 197 -----VEIFPRLVELYIEWCPKLSGKLPD-----HLPALETLA 229 (232)
Q Consensus 197 -----~~~lp~L~~L~l~~c~~l~~~lp~-----~l~~L~~L~ 229 (232)
...||+|+.|++..+ ++. ..++ .+++|++|.
T Consensus 292 ~s~~kt~~f~kL~~L~i~~N-~I~-~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 292 ESLDKTHTFPKLEYLNISEN-NIR-DWRSLNHLRTLENLKHLR 332 (505)
T ss_pred cchhhhcccccceeeecccC-ccc-cccccchhhccchhhhhh
Confidence 245888888888877 554 3432 245555554
No 14
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.20 E-value=8.8e-06 Score=68.17 Aligned_cols=28 Identities=29% Similarity=0.615 Sum_probs=14.5
Q ss_pred CcccEEeEcCCCCCCCCCCCC-CCCcceEEe
Q 040143 201 PRLVELYIEWCPKLSGKLPDH-LPALETLAL 230 (232)
Q Consensus 201 p~L~~L~l~~c~~l~~~lp~~-l~~L~~L~i 230 (232)
++|+.|.+.+|... .+|.. ..+|+.|.+
T Consensus 156 sSLk~L~Is~c~~i--~LP~~LP~SLk~L~l 184 (426)
T PRK15386 156 PSLKTLSLTGCSNI--ILPEKLPESLQSITL 184 (426)
T ss_pred CcccEEEecCCCcc--cCcccccccCcEEEe
Confidence 35777777777433 33332 234555543
No 15
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.13 E-value=8.3e-07 Score=81.60 Aligned_cols=191 Identities=20% Similarity=0.178 Sum_probs=87.6
Q ss_pred CCCCCCCCCCCCeEEecCC-CCChhhhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhh
Q 040143 4 ERSPLTRQTLSDFIVGRGI-GSGLKDLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIA 82 (232)
Q Consensus 4 i~~L~~L~~L~~~~~~~~~-~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 82 (232)
|++|.+||+|++..+.... |..+.+|+.|.+| .+......... ......+++||+|.+.+.... .
T Consensus 591 I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L----nl~~~~~l~~~----~~i~~~L~~Lr~L~l~~s~~~------~ 656 (889)
T KOG4658|consen 591 IGELVHLRYLDLSDTGISHLPSGLGNLKKLIYL----NLEVTGRLESI----PGILLELQSLRVLRLPRSALS------N 656 (889)
T ss_pred HhhhhhhhcccccCCCccccchHHHHHHhhhee----ccccccccccc----cchhhhcccccEEEeeccccc------c
Confidence 5666666666555444332 3333444433333 32222211111 122344788888888654311 1
Q ss_pred HHHHHhcCCCCCCCceEEEEeeCCCCCCCccCC-CCCCccceEEEeCCCCCCCCCCCCCCCCCceeeecccccceEeCcc
Q 040143 83 EEKVLDMLQPHTNIKKLEITRYSGRKFPIWLGD-PSFSNMVTLKLIGCANCTSLPAVGKLVSLKELTIRRMLVLRSIGSE 161 (232)
Q Consensus 83 ~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~-~~l~~L~~L~l~~c~~~~~l~~l~~L~~L~~L~l~~~~~l~~~~~~ 161 (232)
....+..+..+.+|+.+.++......+-+.... .-.+..+.+.+.+|........++.+.+|+.|.|.+|...+.....
T Consensus 657 ~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~ 736 (889)
T KOG4658|consen 657 DKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEW 736 (889)
T ss_pred chhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhccc
Confidence 222344445556677776654332000000000 0011223344333443333444778888888888887644322100
Q ss_pred ccCCCCCc-cCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCC
Q 040143 162 ICGKDCST-PFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLS 215 (232)
Q Consensus 162 ~~~~~~~~-~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~ 215 (232)
....... .||++..+.+.+|..++... ...-.|+|+.|.+..|+.+.
T Consensus 737 -~~~~~~~~~f~~l~~~~~~~~~~~r~l~------~~~f~~~L~~l~l~~~~~~e 784 (889)
T KOG4658|consen 737 -EESLIVLLCFPNLSKVSILNCHMLRDLT------WLLFAPHLTSLSLVSCRLLE 784 (889)
T ss_pred -ccccchhhhHHHHHHHHhhccccccccc------hhhccCcccEEEEecccccc
Confidence 0000111 15566666666665544311 11225677777777775555
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.11 E-value=2e-07 Score=76.35 Aligned_cols=215 Identities=20% Similarity=0.126 Sum_probs=115.4
Q ss_pred CCCCCCCCCCCCeEEecCCCCChhhhhcccC---CCceEEEcccCCCCChhhhcccccCcc-cCCCceEEEecCCCCCCc
Q 040143 4 ERSPLTRQTLSDFIVGRGIGSGLKDLRNLTF---LRGKLCISRLENANDSWDAREASLGDK-KGLEELSLGWGSPFHSRN 79 (232)
Q Consensus 4 i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~---L~~~L~i~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~ 79 (232)
++++.+|+.|++...... ......+..+.+ |+ .+.+.++.-...........+..+ ++|+.|+++++.-..
T Consensus 77 l~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~~~~L~-~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~--- 151 (319)
T cd00116 77 LTKGCGLQELDLSDNALG-PDGCGVLESLLRSSSLQ-ELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG--- 151 (319)
T ss_pred HHhcCceeEEEccCCCCC-hhHHHHHHHHhccCccc-EEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCc---
Confidence 345566777754322211 112233444443 77 788866432211111222335556 789999998774321
Q ss_pred hhhHHHHHhcCCCCCCCceEEEEeeCCCC-----CCCccCCCCCCccceEEEeCCCCCC----CCCC-CCCCCCCceeee
Q 040143 80 EIAEEKVLDMLQPHTNIKKLEITRYSGRK-----FPIWLGDPSFSNMVTLKLIGCANCT----SLPA-VGKLVSLKELTI 149 (232)
Q Consensus 80 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L~~L~l~~c~~~~----~l~~-l~~L~~L~~L~l 149 (232)
.....+...+...++|+.|++.++.... ++..+. .+++|++|++++|.... .+.. +..+++|++|++
T Consensus 152 -~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~--~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~l 228 (319)
T cd00116 152 -ASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLK--ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNL 228 (319)
T ss_pred -hHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHH--hCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEec
Confidence 1222334444445789999998765442 111122 35699999999986421 1222 667899999999
Q ss_pred cccccceEeCc-cccCCCCCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCC--------C
Q 040143 150 RRMLVLRSIGS-EICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLP--------D 220 (232)
Q Consensus 150 ~~~~~l~~~~~-~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp--------~ 220 (232)
++|. +.+... .+... .....+.|+.|.+.+|. +.......+......+++|+.+++.++ ++. ..+ .
T Consensus 229 s~n~-l~~~~~~~l~~~-~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~-~~~~~~~~~~~~ 303 (319)
T cd00116 229 GDNN-LTDAGAAALASA-LLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGN-KFG-EEGAQLLAESLL 303 (319)
T ss_pred CCCc-CchHHHHHHHHH-HhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCC-CCc-HHHHHHHHHHHh
Confidence 9874 332111 11110 00124789999998874 221000001112234689999999988 555 221 1
Q ss_pred CC-CCcceEEeC
Q 040143 221 HL-PALETLALS 231 (232)
Q Consensus 221 ~l-~~L~~L~i~ 231 (232)
.. +.|+.++|.
T Consensus 304 ~~~~~~~~~~~~ 315 (319)
T cd00116 304 EPGNELESLWVK 315 (319)
T ss_pred hcCCchhhcccC
Confidence 23 566766664
No 17
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.06 E-value=3.8e-08 Score=80.66 Aligned_cols=115 Identities=23% Similarity=0.196 Sum_probs=76.1
Q ss_pred CCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCCCCCCCCCceeeecccccceEeCccccCCCCCccCCc
Q 040143 94 TNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPAVGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQS 173 (232)
Q Consensus 94 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~ 173 (232)
+.|+.|+...+.-..+|..++ .+.+|..|++..+. +..+|.++....|.+|++ +.+.++.++.+... .+++
T Consensus 183 ~~L~~ld~~~N~L~tlP~~lg--~l~~L~~LyL~~Nk-i~~lPef~gcs~L~Elh~-g~N~i~~lpae~~~-----~L~~ 253 (565)
T KOG0472|consen 183 KRLKHLDCNSNLLETLPPELG--GLESLELLYLRRNK-IRFLPEFPGCSLLKELHV-GENQIEMLPAEHLK-----HLNS 253 (565)
T ss_pred HHHHhcccchhhhhcCChhhc--chhhhHHHHhhhcc-cccCCCCCccHHHHHHHh-cccHHHhhHHHHhc-----cccc
Confidence 456666554443444666665 46777777776653 566777777777777777 33456666655432 3888
Q ss_pred cceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCCCCCCc
Q 040143 174 LETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPDHLPAL 225 (232)
Q Consensus 174 L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~~l~~L 225 (232)
+..|++.+. ++++.+ ++..-+.+|++|+++++ .+. .+|-.+.+|
T Consensus 254 l~vLDLRdN-klke~P-----de~clLrsL~rLDlSNN-~is-~Lp~sLgnl 297 (565)
T KOG0472|consen 254 LLVLDLRDN-KLKEVP-----DEICLLRSLERLDLSNN-DIS-SLPYSLGNL 297 (565)
T ss_pred ceeeecccc-ccccCc-----hHHHHhhhhhhhcccCC-ccc-cCCcccccc
Confidence 888988653 566544 46666888999999987 777 777656555
No 18
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=7.9e-08 Score=76.02 Aligned_cols=160 Identities=19% Similarity=0.186 Sum_probs=81.9
Q ss_pred hhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCC
Q 040143 29 LRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRK 108 (232)
Q Consensus 29 L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 108 (232)
|.+.++|+ .+++.++.- ++.....+++=.+|+.|+++.+++... ....-++.+ .+.|..|.+.-|....
T Consensus 206 Ls~C~kLk-~lSlEg~~L----dD~I~~~iAkN~~L~~lnlsm~sG~t~---n~~~ll~~s---cs~L~~LNlsWc~l~~ 274 (419)
T KOG2120|consen 206 LSQCSKLK-NLSLEGLRL----DDPIVNTIAKNSNLVRLNLSMCSGFTE---NALQLLLSS---CSRLDELNLSWCFLFT 274 (419)
T ss_pred HHHHHhhh-hcccccccc----CcHHHHHHhccccceeeccccccccch---hHHHHHHHh---hhhHhhcCchHhhccc
Confidence 44555666 666655432 222223355556777777776654320 111112222 3556666664332111
Q ss_pred --CCCccCCCCCCccceEEEeCCCCC---CCCCC-CCCCCCCceeeecccccceEeC-ccccCCCCCccCCccceEeccC
Q 040143 109 --FPIWLGDPSFSNMVTLKLIGCANC---TSLPA-VGKLVSLKELTIRRMLVLRSIG-SEICGKDCSTPFQSLETLCFSD 181 (232)
Q Consensus 109 --~p~~~~~~~l~~L~~L~l~~c~~~---~~l~~-l~~L~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~~p~L~~L~l~~ 181 (232)
..-.+. +--.+|++|.|+||.+- .++.. ..+.|+|.+|++++|..++.-. .++ .+|+.|++|.+++
T Consensus 275 ~~Vtv~V~-hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~------~kf~~L~~lSlsR 347 (419)
T KOG2120|consen 275 EKVTVAVA-HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF------FKFNYLQHLSLSR 347 (419)
T ss_pred hhhhHHHh-hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH------Hhcchheeeehhh
Confidence 000011 01236777777776532 12222 3567788888887776555421 222 2378888888887
Q ss_pred Cccccc-ccccCcCCccCCCCcccEEeEcCC
Q 040143 182 LPELEF-WDTGNQTGYVEIFPRLVELYIEWC 211 (232)
Q Consensus 182 ~~~l~~-~~~~~~~~~~~~lp~L~~L~l~~c 211 (232)
|..+.- .. -....+|+|.+|++.+|
T Consensus 348 CY~i~p~~~-----~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 348 CYDIIPETL-----LELNSKPSLVYLDVFGC 373 (419)
T ss_pred hcCCChHHe-----eeeccCcceEEEEeccc
Confidence 765421 11 13455788888888776
No 19
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.02 E-value=1e-05 Score=49.45 Aligned_cols=38 Identities=29% Similarity=0.392 Sum_probs=18.1
Q ss_pred ccceEEEeCCCCCCCCCC--CCCCCCCceeeecccccceEeC
Q 040143 120 NMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRMLVLRSIG 159 (232)
Q Consensus 120 ~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~~~l~~~~ 159 (232)
+|++|++++| .+..+|. +..+++|++|+++++ .+..++
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~ 41 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIP 41 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEE
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccC
Confidence 4555555554 3344443 455555555555432 344443
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.02 E-value=2.5e-06 Score=78.48 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=48.5
Q ss_pred CCCCCCCceEEEEeeCCCCCC-CccC---CCC-CCccceEEEeCCCCCCCCCCCCCCCCCceeeecccccceEeC
Q 040143 90 LQPHTNIKKLEITRYSGRKFP-IWLG---DPS-FSNMVTLKLIGCANCTSLPAVGKLVSLKELTIRRMLVLRSIG 159 (232)
Q Consensus 90 l~~~~~L~~L~l~~~~~~~~p-~~~~---~~~-l~~L~~L~l~~c~~~~~l~~l~~L~~L~~L~l~~~~~l~~~~ 159 (232)
+..+.+|+.|.|.++...+.. .|.. ... |+++.++.+..|+....+-|....|+|+.|++..|..++++.
T Consensus 713 ~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 713 LGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred cccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCC
Confidence 444578999999888765422 2221 112 567778888888877777776677999999998887776553
No 21
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=8.3e-07 Score=73.54 Aligned_cols=89 Identities=21% Similarity=0.244 Sum_probs=57.2
Q ss_pred CCccceEEEeCCCCCC--CCCCCCCCCCCceeeecccccceEeCccccCC-CCCccCCccceEeccCCcccccccccCcC
Q 040143 118 FSNMVTLKLIGCANCT--SLPAVGKLVSLKELTIRRMLVLRSIGSEICGK-DCSTPFQSLETLCFSDLPELEFWDTGNQT 194 (232)
Q Consensus 118 l~~L~~L~l~~c~~~~--~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~-~~~~~~p~L~~L~l~~~~~l~~~~~~~~~ 194 (232)
+..|+.|+|+++..+. .++..+.||.|..|.++.+ .+.++...-.+. .....||.|++|.+... +..+|. ..
T Consensus 245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~---sl 319 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWR---SL 319 (505)
T ss_pred hhHHhhccccCCcccccccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccC-cccccc---cc
Confidence 5678888888876542 2344889999999998765 333332111111 12456999999999765 345555 33
Q ss_pred CccCCCCcccEEeEcCC
Q 040143 195 GYVEIFPRLVELYIEWC 211 (232)
Q Consensus 195 ~~~~~lp~L~~L~l~~c 211 (232)
.....+++|..|.+.+.
T Consensus 320 ~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 320 NHLRTLENLKHLRITLN 336 (505)
T ss_pred chhhccchhhhhhcccc
Confidence 34456788888887654
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.89 E-value=3.6e-05 Score=69.89 Aligned_cols=28 Identities=32% Similarity=0.374 Sum_probs=16.2
Q ss_pred cccEEeEcCCCCCCCCCCCCCCCcceEEeC
Q 040143 202 RLVELYIEWCPKLSGKLPDHLPALETLALS 231 (232)
Q Consensus 202 ~L~~L~l~~c~~l~~~lp~~l~~L~~L~i~ 231 (232)
+|+.|+++++ ++. .+|..+++|+.|+++
T Consensus 383 ~L~~LdLs~N-~Lt-~LP~l~s~L~~LdLS 410 (788)
T PRK15387 383 GLKELIVSGN-RLT-SLPVLPSELKELMVS 410 (788)
T ss_pred ccceEEecCC-ccc-CCCCcccCCCEEEcc
Confidence 4555566555 555 555555566666554
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.87 E-value=7.8e-07 Score=79.81 Aligned_cols=91 Identities=21% Similarity=0.184 Sum_probs=45.3
Q ss_pred CCccceEEEeCCCCCCCCCC--CCCCCCCceeeecccccceEeCccccCC----------------CCCccCCccceEec
Q 040143 118 FSNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRMLVLRSIGSEICGK----------------DCSTPFQSLETLCF 179 (232)
Q Consensus 118 l~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~----------------~~~~~~p~L~~L~l 179 (232)
+.+||.|+++.+. +..+|. +.+++.|++|.++++ .++.++..+... +....+|.|+.+++
T Consensus 382 ~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDL 459 (1081)
T ss_pred ccceeeeeecccc-cccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEec
Confidence 5566666666543 455555 566666666666654 344444322220 01122555666666
Q ss_pred cCCcccccccccCcCCccCCCCcccEEeEcCCCCCC
Q 040143 180 SDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLS 215 (232)
Q Consensus 180 ~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~ 215 (232)
.|.++.... .+ ...-.|+|+.|++++++++.
T Consensus 460 -S~N~L~~~~---l~-~~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 460 -SCNNLSEVT---LP-EALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred -ccchhhhhh---hh-hhCCCcccceeeccCCcccc
Confidence 333444333 21 11112567777777665544
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.84 E-value=1.6e-05 Score=72.12 Aligned_cols=120 Identities=22% Similarity=0.302 Sum_probs=64.9
Q ss_pred CCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC-CCCCCCCceeeecccccceEeCccccC---------
Q 040143 95 NIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA-VGKLVSLKELTIRRMLVLRSIGSEICG--------- 164 (232)
Q Consensus 95 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~--------- 164 (232)
+|+.|+++++....+|.++. ++|++|++++| .+..+|. +. ++|++|+++++ .+..++..+..
T Consensus 242 ~L~~L~Ls~N~L~~LP~~l~----s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~ 313 (754)
T PRK15370 242 TIQEMELSINRITELPERLP----SALQSLDLFHN-KISCLPENLP--EELRYLSVYDN-SIRTLPAHLPSGITHLNVQS 313 (754)
T ss_pred cccEEECcCCccCcCChhHh----CCCCEEECcCC-ccCccccccC--CCCcEEECCCC-ccccCcccchhhHHHHHhcC
Confidence 56666666655555554432 35666666544 3445553 22 36666666554 34443321110
Q ss_pred C--CC--CccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCCC-CCCcceEEeCC
Q 040143 165 K--DC--STPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPDH-LPALETLALSD 232 (232)
Q Consensus 165 ~--~~--~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~~-l~~L~~L~i~~ 232 (232)
. .. ...+++|+.|.+.++. +..+. . ...++|+.|++++| ++. .+|.. .++|+.|++++
T Consensus 314 N~Lt~LP~~l~~sL~~L~Ls~N~-Lt~LP-----~--~l~~sL~~L~Ls~N-~L~-~LP~~lp~~L~~LdLs~ 376 (754)
T PRK15370 314 NSLTALPETLPPGLKTLEAGENA-LTSLP-----A--SLPPELQVLDVSKN-QIT-VLPETLPPTITTLDVSR 376 (754)
T ss_pred CccccCCccccccceeccccCCc-cccCC-----h--hhcCcccEEECCCC-CCC-cCChhhcCCcCEEECCC
Confidence 0 00 0113567777776653 33222 1 12368999999988 787 77764 45788888753
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.82 E-value=1.3e-06 Score=65.12 Aligned_cols=107 Identities=20% Similarity=0.154 Sum_probs=44.0
Q ss_pred cccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCC---C
Q 040143 60 DKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSL---P 136 (232)
Q Consensus 60 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l---~ 136 (232)
.+.+|+.|+++.|.- ..++++..+++|+.|.++++....++..+. ..+++|++|+++++. +.++ -
T Consensus 40 ~l~~L~~L~Ls~N~I----------~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~-~~lp~L~~L~L~~N~-I~~l~~l~ 107 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQI----------TKLEGLPGLPRLKTLDLSNNRISSISEGLD-KNLPNLQELYLSNNK-ISDLNELE 107 (175)
T ss_dssp T-TT--EEE-TTS------------S--TT----TT--EEE--SS---S-CHHHH-HH-TT--EEE-TTS----SCCCCG
T ss_pred hhcCCCEEECCCCCC----------ccccCccChhhhhhcccCCCCCCccccchH-HhCCcCCEEECcCCc-CCChHHhH
Confidence 457888898876632 134456667899999998877666644321 137899999998765 3444 3
Q ss_pred CCCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccC
Q 040143 137 AVGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSD 181 (232)
Q Consensus 137 ~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~ 181 (232)
.+..+|+|++|++.+++--+.-.... -....+|+|+.|+-..
T Consensus 108 ~L~~l~~L~~L~L~~NPv~~~~~YR~---~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 108 PLSSLPKLRVLSLEGNPVCEKKNYRL---FVIYKLPSLKVLDGQD 149 (175)
T ss_dssp GGGG-TT--EEE-TT-GGGGSTTHHH---HHHHH-TT-SEETTEE
T ss_pred HHHcCCCcceeeccCCcccchhhHHH---HHHHHcChhheeCCEE
Confidence 37788999999998875322111000 0123478888887643
No 26
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.76 E-value=3.2e-08 Score=81.08 Aligned_cols=118 Identities=26% Similarity=0.329 Sum_probs=75.1
Q ss_pred CCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC-CCCCCCCceeeecccccceEeCccccCCCCCccCCc
Q 040143 95 NIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA-VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQS 173 (232)
Q Consensus 95 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~ 173 (232)
++..+.+.++...++|.... ..+.|++|+...+ .++.+|. +|.|.+|+.|++++. .+..+| +|-| ...
T Consensus 161 ~l~~l~~~~n~l~~l~~~~i--~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~N-ki~~lP-ef~g------cs~ 229 (565)
T KOG0472|consen 161 KLSKLDLEGNKLKALPENHI--AMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRN-KIRFLP-EFPG------CSL 229 (565)
T ss_pred HHHHhhccccchhhCCHHHH--HHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhc-ccccCC-CCCc------cHH
Confidence 45555555555555554433 2567787776543 3567776 888888888888764 455555 4433 556
Q ss_pred cceEeccCCcccccccccCcCCcc-CCCCcccEEeEcCCCCCCCCCCCC---CCCcceEEeC
Q 040143 174 LETLCFSDLPELEFWDTGNQTGYV-EIFPRLVELYIEWCPKLSGKLPDH---LPALETLALS 231 (232)
Q Consensus 174 L~~L~l~~~~~l~~~~~~~~~~~~-~~lp~L~~L~l~~c~~l~~~lp~~---l~~L~~L~i~ 231 (232)
|++|.+.. ..++... .+. ..++++..|+++++ +++ +.|+. +.+|.+|+++
T Consensus 230 L~Elh~g~-N~i~~lp-----ae~~~~L~~l~vLDLRdN-klk-e~Pde~clLrsL~rLDlS 283 (565)
T KOG0472|consen 230 LKELHVGE-NQIEMLP-----AEHLKHLNSLLVLDLRDN-KLK-EVPDEICLLRSLERLDLS 283 (565)
T ss_pred HHHHHhcc-cHHHhhH-----HHHhcccccceeeecccc-ccc-cCchHHHHhhhhhhhccc
Confidence 77777643 2233222 222 36999999999999 999 99974 4557777765
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.70 E-value=0.00014 Score=66.11 Aligned_cols=56 Identities=25% Similarity=0.266 Sum_probs=26.8
Q ss_pred CCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCCCCCCCCCceeeecccccceEe
Q 040143 95 NIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPAVGKLVSLKELTIRRMLVLRSI 158 (232)
Q Consensus 95 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~l~~L~~L~~L~l~~~~~l~~~ 158 (232)
.-..|+++++....+|..+. ++|++|++..+. ++.+|.+ +++|++|+++++ .++.+
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~----~~L~~L~L~~N~-Lt~LP~l--p~~Lk~LdLs~N-~LtsL 257 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP----AHITTLVIPDNN-LTSLPAL--PPELRTLEVSGN-QLTSL 257 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh----cCCCEEEccCCc-CCCCCCC--CCCCcEEEecCC-ccCcc
Confidence 34455555554444554432 245555555542 3444432 355556665543 34433
No 28
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.67 E-value=2.8e-05 Score=47.49 Aligned_cols=57 Identities=23% Similarity=0.348 Sum_probs=43.9
Q ss_pred CCCceEEEEeeCCCCCCC-ccCCCCCCccceEEEeCCCCCCCCCC--CCCCCCCceeeecccc
Q 040143 94 TNIKKLEITRYSGRKFPI-WLGDPSFSNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRML 153 (232)
Q Consensus 94 ~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~~ 153 (232)
++|++|+++++....+|. ++. .+++|++|++++|. +..++. +..+++|++|+++++.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~--~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFS--NLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTT--TGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHc--CCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 468889988776666664 444 57899999999765 566765 8899999999998763
No 29
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.61 E-value=9.9e-05 Score=67.14 Aligned_cols=119 Identities=24% Similarity=0.241 Sum_probs=68.9
Q ss_pred CCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC-CCCCCCCceeeecccccceEeCccccCCCCCccCC
Q 040143 94 TNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA-VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQ 172 (232)
Q Consensus 94 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p 172 (232)
.+|+.|++.++....+|..+ .++|+.|++++|. +..+|. +. ++|+.|++++ +.+..+|..+ ++
T Consensus 220 ~nL~~L~Ls~N~LtsLP~~l----~~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~l--------~~ 283 (754)
T PRK15370 220 GNIKTLYANSNQLTSIPATL----PDTIQEMELSINR-ITELPERLP--SALQSLDLFH-NKISCLPENL--------PE 283 (754)
T ss_pred cCCCEEECCCCccccCChhh----hccccEEECcCCc-cCcCChhHh--CCCCEEECcC-CccCcccccc--------CC
Confidence 46777777766555555432 3467778887765 445664 32 4788888864 4566655322 24
Q ss_pred ccceEeccCCcccccccc------------cC-cCC-ccCCCCcccEEeEcCCCCCCCCCCCCC-CCcceEEeC
Q 040143 173 SLETLCFSDLPELEFWDT------------GN-QTG-YVEIFPRLVELYIEWCPKLSGKLPDHL-PALETLALS 231 (232)
Q Consensus 173 ~L~~L~l~~~~~l~~~~~------------~~-~~~-~~~~lp~L~~L~l~~c~~l~~~lp~~l-~~L~~L~i~ 231 (232)
+|+.|+++++ ++..+.. ++ +.. .....++|+.|.+.+| .++ .+|..+ ++|+.|+++
T Consensus 284 sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N-~Lt-~LP~~l~~sL~~L~Ls 354 (754)
T PRK15370 284 ELRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN-ALT-SLPASLPPELQVLDVS 354 (754)
T ss_pred CCcEEECCCC-ccccCcccchhhHHHHHhcCCccccCCccccccceeccccCC-ccc-cCChhhcCcccEEECC
Confidence 6788877664 3332210 00 000 0112457888888888 677 677533 577777765
No 30
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.59 E-value=7.1e-06 Score=73.88 Aligned_cols=98 Identities=18% Similarity=0.151 Sum_probs=54.9
Q ss_pred CCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCCCCCCCCCceeeecccccceEeCccccCCCCCccCCcc
Q 040143 95 NIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPAVGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSL 174 (232)
Q Consensus 95 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L 174 (232)
.|+.|.++|+.-..+|+.+. ....|+.|.-+++. +..+|.+.+++.|+.++++ |+++.++-..... +-|.|
T Consensus 408 ~LeeL~LSGNkL~~Lp~tva--~~~~L~tL~ahsN~-l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~~-----p~p~L 478 (1081)
T KOG0618|consen 408 ELEELNLSGNKLTTLPDTVA--NLGRLHTLRAHSNQ-LLSFPELAQLPQLKVLDLS-CNNLSEVTLPEAL-----PSPNL 478 (1081)
T ss_pred HhHHHhcccchhhhhhHHHH--hhhhhHHHhhcCCc-eeechhhhhcCcceEEecc-cchhhhhhhhhhC-----CCccc
Confidence 44444444444444443333 23445555444432 3456667889999999995 5667665433222 24899
Q ss_pred ceEeccCCcccccccccCcCCccCCCCcccEEeEc
Q 040143 175 ETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIE 209 (232)
Q Consensus 175 ~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~ 209 (232)
++|++.+...+. .+...||.++.+...
T Consensus 479 kyLdlSGN~~l~--------~d~~~l~~l~~l~~~ 505 (1081)
T KOG0618|consen 479 KYLDLSGNTRLV--------FDHKTLKVLKSLSQM 505 (1081)
T ss_pred ceeeccCCcccc--------cchhhhHHhhhhhhe
Confidence 999998866422 133446655555443
No 31
>PLN03150 hypothetical protein; Provisional
Probab=97.58 E-value=9.5e-05 Score=66.28 Aligned_cols=88 Identities=20% Similarity=0.198 Sum_probs=42.6
Q ss_pred cceEEEeCCCCCCCCCC-CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcccccccccCcCCccCC
Q 040143 121 MVTLKLIGCANCTSLPA-VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEI 199 (232)
Q Consensus 121 L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~ 199 (232)
++.|+++++.....+|. ++.+++|+.|+++++.-...++..+ +.+++|+.|+++++. +.. .++...+.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~------~~l~~L~~LdLs~N~-lsg----~iP~~l~~ 488 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL------GSITSLEVLDLSYNS-FNG----SIPESLGQ 488 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHH------hCCCCCCEEECCCCC-CCC----CCchHHhc
Confidence 44555555544344444 5566666666665543222333222 225566666665542 211 12223345
Q ss_pred CCcccEEeEcCCCCCCCCCCC
Q 040143 200 FPRLVELYIEWCPKLSGKLPD 220 (232)
Q Consensus 200 lp~L~~L~l~~c~~l~~~lp~ 220 (232)
+++|+.|++++| ++.|.+|.
T Consensus 489 L~~L~~L~Ls~N-~l~g~iP~ 508 (623)
T PLN03150 489 LTSLRILNLNGN-SLSGRVPA 508 (623)
T ss_pred CCCCCEEECcCC-cccccCCh
Confidence 566666666655 45545554
No 32
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=1.1e-05 Score=64.16 Aligned_cols=140 Identities=17% Similarity=0.169 Sum_probs=87.6
Q ss_pred hhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCC
Q 040143 28 DLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGR 107 (232)
Q Consensus 28 ~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 107 (232)
.+.+=..|+ .+.+..+.++.. .+...-+.+++.|..|+++||...... -......+ -++|..|.+.|+...
T Consensus 229 ~iAkN~~L~-~lnlsm~sG~t~--n~~~ll~~scs~L~~LNlsWc~l~~~~----Vtv~V~hi--se~l~~LNlsG~rrn 299 (419)
T KOG2120|consen 229 TIAKNSNLV-RLNLSMCSGFTE--NALQLLLSSCSRLDELNLSWCFLFTEK----VTVAVAHI--SETLTQLNLSGYRRN 299 (419)
T ss_pred HHhccccce-eeccccccccch--hHHHHHHHhhhhHhhcCchHhhccchh----hhHHHhhh--chhhhhhhhhhhHhh
Confidence 344445566 677777666643 222334677899999999999653211 11122222 267889999887432
Q ss_pred CC----CCccCCCCCCccceEEEeCCCCCCCC--CCCCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccC
Q 040143 108 KF----PIWLGDPSFSNMVTLKLIGCANCTSL--PAVGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSD 181 (232)
Q Consensus 108 ~~----p~~~~~~~l~~L~~L~l~~c~~~~~l--~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~ 181 (232)
-. ..... -.++|.+|++++|..+++= ..+-+++.|++|.++.|+.+-.- .+. .....|+|++|++.+
T Consensus 300 l~~sh~~tL~~--rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~--~~~---~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 300 LQKSHLSTLVR--RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPE--TLL---ELNSKPSLVYLDVFG 372 (419)
T ss_pred hhhhHHHHHHH--hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChH--Hee---eeccCcceEEEEecc
Confidence 11 11111 2578999999999877641 23778999999999999855321 111 123489999999988
Q ss_pred Cc
Q 040143 182 LP 183 (232)
Q Consensus 182 ~~ 183 (232)
|.
T Consensus 373 ~v 374 (419)
T KOG2120|consen 373 CV 374 (419)
T ss_pred cc
Confidence 63
No 33
>PLN03150 hypothetical protein; Provisional
Probab=97.36 E-value=0.00039 Score=62.43 Aligned_cols=107 Identities=17% Similarity=0.154 Sum_probs=72.0
Q ss_pred CceEEEEeeCCC-CCCCccCCCCCCccceEEEeCCCCCCCCCC-CCCCCCCceeeecccccceEeCccccCCCCCccCCc
Q 040143 96 IKKLEITRYSGR-KFPIWLGDPSFSNMVTLKLIGCANCTSLPA-VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQS 173 (232)
Q Consensus 96 L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~ 173 (232)
++.|++.++... .+|..+. .+++|++|++++|...+.+|. ++.+++|+.|+++++.-...+|..+. .+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~--~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~------~L~~ 491 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDIS--KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG------QLTS 491 (623)
T ss_pred EEEEECCCCCccccCCHHHh--CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh------cCCC
Confidence 555666554433 2565555 588999999999877678886 99999999999988754445554333 3899
Q ss_pred cceEeccCCcccccccccCcCCccCC-CCcccEEeEcCCCCCC
Q 040143 174 LETLCFSDLPELEFWDTGNQTGYVEI-FPRLVELYIEWCPKLS 215 (232)
Q Consensus 174 L~~L~l~~~~~l~~~~~~~~~~~~~~-lp~L~~L~l~~c~~l~ 215 (232)
|+.|+++++. +... ++...+. +.++..+++.+++.+.
T Consensus 492 L~~L~Ls~N~-l~g~----iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 492 LRILNLNGNS-LSGR----VPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCEEECcCCc-cccc----CChHHhhccccCceEEecCCcccc
Confidence 9999998764 3221 2222222 3466788888776555
No 34
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.22 E-value=0.00096 Score=56.20 Aligned_cols=117 Identities=18% Similarity=0.311 Sum_probs=77.2
Q ss_pred HHhcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC-CCCCCCCceeeecccccceEeCccccC
Q 040143 86 VLDMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA-VGKLVSLKELTIRRMLVLRSIGSEICG 164 (232)
Q Consensus 86 ~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~ 164 (232)
....+....+++.|++++|....+|. ..++|++|.+++|..+..+|. + .++|++|.+++|..+..+|
T Consensus 44 a~~r~~~~~~l~~L~Is~c~L~sLP~-----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP----- 111 (426)
T PRK15386 44 ITPQIEEARASGRLYIKDCDIESLPV-----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP----- 111 (426)
T ss_pred HHHHHHHhcCCCEEEeCCCCCcccCC-----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-----
Confidence 33334445889999999987767773 235799999999998888885 3 2699999999997776554
Q ss_pred CCCCccCCccceEeccCCcccccccccCcCCccCCC-CcccEEeEcCCCCCC-CCCCCCC-CCcceEEeC
Q 040143 165 KDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIF-PRLVELYIEWCPKLS-GKLPDHL-PALETLALS 231 (232)
Q Consensus 165 ~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~l-p~L~~L~l~~c~~l~-~~lp~~l-~~L~~L~i~ 231 (232)
+.|+.|.+.. ..... .+.+ ++|+.|.+..+.... ..+|..+ ++|+.|.+.
T Consensus 112 -------~sLe~L~L~~-n~~~~---------L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is 164 (426)
T PRK15386 112 -------ESVRSLEIKG-SATDS---------IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLT 164 (426)
T ss_pred -------cccceEEeCC-CCCcc---------cccCcchHhheeccccccccccccccccCCcccEEEec
Confidence 3577787743 22221 1224 468999886432111 1334333 578888875
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.22 E-value=3.1e-05 Score=61.83 Aligned_cols=104 Identities=19% Similarity=0.197 Sum_probs=55.5
Q ss_pred CCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCC-CCCCCCCCceeeecccccceEeCccccCCCCCccC
Q 040143 93 HTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLP-AVGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPF 171 (232)
Q Consensus 93 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~-~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 171 (232)
.+.++.|+++.+....+.+ +. .+++|.+|+++++.. ..+. |=.+|-|.+.|.+.++ .++++. .++.+
T Consensus 306 ~Pkir~L~lS~N~i~~v~n-La--~L~~L~~LDLS~N~L-s~~~Gwh~KLGNIKtL~La~N-~iE~LS-------GL~KL 373 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQN-LA--ELPQLQLLDLSGNLL-AECVGWHLKLGNIKTLKLAQN-KIETLS-------GLRKL 373 (490)
T ss_pred ccceeEEeccccceeeehh-hh--hcccceEeecccchh-HhhhhhHhhhcCEeeeehhhh-hHhhhh-------hhHhh
Confidence 4566666665544433333 22 356666666665432 2222 2234455555555442 233321 34556
Q ss_pred CccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCC
Q 040143 172 QSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCP 212 (232)
Q Consensus 172 p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~ 212 (232)
-+|..|++.+.. .+.+. .-...|++|.||.+.+.++|
T Consensus 374 YSLvnLDl~~N~-Ie~ld---eV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 374 YSLVNLDLSSNQ-IEELD---EVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhheeccccccc-hhhHH---HhcccccccHHHHHhhcCCC
Confidence 777788776542 22222 22367889999999888874
No 36
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.02 E-value=0.00014 Score=65.50 Aligned_cols=133 Identities=18% Similarity=0.176 Sum_probs=70.8
Q ss_pred cCCCceEEEecCCCCCCchhhHHHHHhcCC-CCCCCceEEEEeeCCCC--CCCccCCCCCCccceEEEeCCCCCCCCCCC
Q 040143 62 KGLEELSLGWGSPFHSRNEIAEEKVLDMLQ-PHTNIKKLEITRYSGRK--FPIWLGDPSFSNMVTLKLIGCANCTSLPAV 138 (232)
Q Consensus 62 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~--~p~~~~~~~l~~L~~L~l~~c~~~~~l~~l 138 (232)
.+|++|++++.... ...+...++ -+|.|+.|.+.|..... +.. +. .+|++|..|+|+++. ++.+-.+
T Consensus 122 ~nL~~LdI~G~~~~-------s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~-lc-~sFpNL~sLDIS~Tn-I~nl~GI 191 (699)
T KOG3665|consen 122 QNLQHLDISGSELF-------SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQ-LC-ASFPNLRSLDISGTN-ISNLSGI 191 (699)
T ss_pred HhhhhcCccccchh-------hccHHHHHhhhCcccceEEecCceecchhHHH-Hh-hccCccceeecCCCC-ccCcHHH
Confidence 56777777653211 112222222 24788888886543211 111 11 258888888888764 5566558
Q ss_pred CCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcccccc--cccCcCCccCCCCcccEEeEcC
Q 040143 139 GKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEFW--DTGNQTGYVEIFPRLVELYIEW 210 (232)
Q Consensus 139 ~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~--~~~~~~~~~~~lp~L~~L~l~~ 210 (232)
++|.||+.|.+++.. .+.-.. + ..++.+..|+.|++++-...... +..=+ .-...+|.|+.|+.++
T Consensus 192 S~LknLq~L~mrnLe-~e~~~~-l---~~LF~L~~L~vLDIS~~~~~~~~~ii~qYl-ec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNLE-FESYQD-L---IDLFNLKKLRVLDISRDKNNDDTKIIEQYL-ECGMVLPELRFLDCSG 259 (699)
T ss_pred hccccHHHHhccCCC-CCchhh-H---HHHhcccCCCeeeccccccccchHHHHHHH-HhcccCccccEEecCC
Confidence 888888888887653 221100 0 02234788888888763332211 00001 1123478777777664
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.02 E-value=0.0015 Score=55.33 Aligned_cols=60 Identities=28% Similarity=0.440 Sum_probs=30.6
Q ss_pred CCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC-CCCCCCCceeeeccc
Q 040143 90 LQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA-VGKLVSLKELTIRRM 152 (232)
Q Consensus 90 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~~ 152 (232)
+..+++|+.|.+..+....+|.... ..++|+.|+++++. +..+|. ++.+.+|+++.+.+.
T Consensus 159 ~~~l~~L~~L~l~~N~l~~l~~~~~--~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 159 LRNLPNLKNLDLSFNDLSDLPKLLS--NLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred hhccccccccccCCchhhhhhhhhh--hhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCC
Confidence 4445666666666555554544332 24556666665543 345554 234444565555443
No 38
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.83 E-value=0.00027 Score=63.82 Aligned_cols=126 Identities=17% Similarity=0.188 Sum_probs=77.0
Q ss_pred CCCceEEEEeeCCCCCCCccC--CCCCCccceEEEeCCCCC-CCCCC-CCCCCCCceeeecccccceEeCccccCCCCCc
Q 040143 94 TNIKKLEITRYSGRKFPIWLG--DPSFSNMVTLKLIGCANC-TSLPA-VGKLVSLKELTIRRMLVLRSIGSEICGKDCST 169 (232)
Q Consensus 94 ~~L~~L~l~~~~~~~~p~~~~--~~~l~~L~~L~l~~c~~~-~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 169 (232)
.+|++|+|+|.... .-.|.. ..-||+|++|.+.+-... +++.. ...+|||.+|+|++++ +..+ . ...
T Consensus 122 ~nL~~LdI~G~~~~-s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl----~---GIS 192 (699)
T KOG3665|consen 122 QNLQHLDISGSELF-SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL----S---GIS 192 (699)
T ss_pred HhhhhcCccccchh-hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc----H---HHh
Confidence 58999999873221 124421 124899999999875432 23322 6789999999999873 4433 1 123
Q ss_pred cCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCC-C-------CCCCCCcceEEeCC
Q 040143 170 PFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGK-L-------PDHLPALETLALSD 232 (232)
Q Consensus 170 ~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~-l-------p~~l~~L~~L~i~~ 232 (232)
.+++|+.|.+.+++ ++.+. .-.+...+.+|+.|+|++=.+..+. + ...+|.|+.|+.++
T Consensus 193 ~LknLq~L~mrnLe-~e~~~---~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLE-FESYQ---DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred ccccHHHHhccCCC-CCchh---hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 47778877776543 22111 0013345899999999975333311 1 12578899888763
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.81 E-value=0.0011 Score=37.54 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=22.5
Q ss_pred CccceEEEeCCCCCCCCCC-CCCCCCCceeeeccc
Q 040143 119 SNMVTLKLIGCANCTSLPA-VGKLVSLKELTIRRM 152 (232)
Q Consensus 119 ~~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~~ 152 (232)
++|++|+++++. ++++|. +++|++|+.|+++++
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSS
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCC
Confidence 367777777764 456777 777888888887766
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.75 E-value=0.0001 Score=58.97 Aligned_cols=107 Identities=21% Similarity=0.208 Sum_probs=75.0
Q ss_pred CcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCCC
Q 040143 59 GDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPAV 138 (232)
Q Consensus 59 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~l 138 (232)
+-.+.++.|.++++.-. ..+++..+++|..|+++++...++--|-. .+-++++|.+.++ .++++..+
T Consensus 304 KL~Pkir~L~lS~N~i~----------~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~--KLGNIKtL~La~N-~iE~LSGL 370 (490)
T KOG1259|consen 304 KLAPKLRRLILSQNRIR----------TVQNLAELPQLQLLDLSGNLLAECVGWHL--KLGNIKTLKLAQN-KIETLSGL 370 (490)
T ss_pred hhccceeEEecccccee----------eehhhhhcccceEeecccchhHhhhhhHh--hhcCEeeeehhhh-hHhhhhhh
Confidence 33466667766665321 23445567899999999876666666643 4678999999886 36778889
Q ss_pred CCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCc
Q 040143 139 GKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLP 183 (232)
Q Consensus 139 ~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 183 (232)
++|=+|.+|+++++ +++++... .+++.+|+|+.+.+.+.|
T Consensus 371 ~KLYSLvnLDl~~N-~Ie~ldeV----~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 371 RKLYSLVNLDLSSN-QIEELDEV----NHIGNLPCLETLRLTGNP 410 (490)
T ss_pred Hhhhhheecccccc-chhhHHHh----cccccccHHHHHhhcCCC
Confidence 99999999999775 45544321 245679999999987755
No 41
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.46 E-value=0.0014 Score=36.99 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=27.7
Q ss_pred CCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCC
Q 040143 94 TNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLP 136 (232)
Q Consensus 94 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~ 136 (232)
++|++|++.++....+|..+. .+++|++|++++|. +++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~--~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELS--NLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGT--TCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCCCcccCchHh--CCCCCCEEEecCCC-CCCCc
Confidence 468888888877777777554 58899999998875 44444
No 42
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.00077 Score=50.83 Aligned_cols=70 Identities=21% Similarity=0.150 Sum_probs=47.6
Q ss_pred CCCCCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCC
Q 040143 135 LPAVGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCP 212 (232)
Q Consensus 135 l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~ 212 (232)
+..+..++.++.|++.+|..+.+-..+..+ +.+|+|+.|+|++|+...+-- .. ....|++|+.|.+.+-+
T Consensus 118 le~L~~l~~i~~l~l~~ck~~dD~~L~~l~----~~~~~L~~L~lsgC~rIT~~G---L~-~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 118 LEHLRDLRSIKSLSLANCKYFDDWCLERLG----GLAPSLQDLDLSGCPRITDGG---LA-CLLKLKNLRRLHLYDLP 187 (221)
T ss_pred HHHHhccchhhhheeccccchhhHHHHHhc----ccccchheeeccCCCeechhH---HH-HHHHhhhhHHHHhcCch
Confidence 334677888888888888877665555444 358888888888888765422 11 23457888888887654
No 43
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.11 E-value=0.02 Score=43.41 Aligned_cols=105 Identities=19% Similarity=0.190 Sum_probs=59.0
Q ss_pred CCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC-CCC-CCCCceeeecccccceEeCccccCCCCCccC
Q 040143 94 TNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA-VGK-LVSLKELTIRRMLVLRSIGSEICGKDCSTPF 171 (232)
Q Consensus 94 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-l~~-L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 171 (232)
.+...++++++....++... .++.|..|.++.+. +..+-. ++. +|+|..|.+.++ ++.++.+- ..+..+
T Consensus 42 d~~d~iDLtdNdl~~l~~lp---~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnN-si~~l~dl----~pLa~~ 112 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLP---HLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNN-SIQELGDL----DPLASC 112 (233)
T ss_pred cccceecccccchhhcccCC---CccccceEEecCCc-ceeeccchhhhccccceEEecCc-chhhhhhc----chhccC
Confidence 35666666666554444432 46788888887654 444533 443 577888888664 34333211 123447
Q ss_pred CccceEeccCCccccc--ccccCcCCccCCCCcccEEeEcCC
Q 040143 172 QSLETLCFSDLPELEF--WDTGNQTGYVEIFPRLVELYIEWC 211 (232)
Q Consensus 172 p~L~~L~l~~~~~l~~--~~~~~~~~~~~~lp~L~~L~l~~c 211 (232)
|.|++|.+.+.+.-.. .. . -....+|+|+.|++..-
T Consensus 113 p~L~~Ltll~Npv~~k~~YR---~-yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 113 PKLEYLTLLGNPVEHKKNYR---L-YVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CccceeeecCCchhcccCce---e-EEEEecCcceEeehhhh
Confidence 8888887766542211 00 0 02345788888887653
No 44
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.04 E-value=0.0061 Score=51.58 Aligned_cols=130 Identities=18% Similarity=0.226 Sum_probs=83.6
Q ss_pred ccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCC
Q 040143 57 SLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLP 136 (232)
Q Consensus 57 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~ 136 (232)
.++.+++|+.|.++.+.. .++.......++|+.|.+++.....+|..+. ....|+++.+..+.....+.
T Consensus 158 ~~~~l~~L~~L~l~~N~l---------~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~--~~~~L~~l~~~~N~~~~~~~ 226 (394)
T COG4886 158 PLRNLPNLKNLDLSFNDL---------SDLPKLLSNLSNLNNLDLSGNKISDLPPEIE--LLSALEELDLSNNSIIELLS 226 (394)
T ss_pred hhhccccccccccCCchh---------hhhhhhhhhhhhhhheeccCCccccCchhhh--hhhhhhhhhhcCCcceecch
Confidence 366777888888866532 1222222246789999999888777877543 24569999998875444455
Q ss_pred CCCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCC
Q 040143 137 AVGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWC 211 (232)
Q Consensus 137 ~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c 211 (232)
.+..+.++..+.+.+. .+..++.. ....++++.|++.++. +..+. ..+.+.+++.|++.+.
T Consensus 227 ~~~~~~~l~~l~l~~n-~~~~~~~~------~~~l~~l~~L~~s~n~-i~~i~------~~~~~~~l~~L~~s~n 287 (394)
T COG4886 227 SLSNLKNLSGLELSNN-KLEDLPES------IGNLSNLETLDLSNNQ-ISSIS------SLGSLTNLRELDLSGN 287 (394)
T ss_pred hhhhcccccccccCCc-eeeeccch------hccccccceecccccc-ccccc------cccccCccCEEeccCc
Confidence 5888888888886544 33332222 2337778888886643 33333 2456788888888775
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=0.0072 Score=48.57 Aligned_cols=81 Identities=19% Similarity=0.117 Sum_probs=52.4
Q ss_pred ccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC---
Q 040143 61 KKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA--- 137 (232)
Q Consensus 61 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--- 137 (232)
.+.++.+++.|+.-. .+.++..-+..++.|+.|.++.+.-...-.... .+..+|+.|.+.+. .++|
T Consensus 70 ~~~v~elDL~~N~iS------dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT----~L~w~~~ 138 (418)
T KOG2982|consen 70 VTDVKELDLTGNLIS------DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGT----GLSWTQS 138 (418)
T ss_pred hhhhhhhhcccchhc------cHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcCC----CCChhhh
Confidence 467888999877321 244555556778999999997554322111111 13568999999774 3443
Q ss_pred ---CCCCCCCceeeeccc
Q 040143 138 ---VGKLVSLKELTIRRM 152 (232)
Q Consensus 138 ---l~~L~~L~~L~l~~~ 152 (232)
+..+|.++.|+++.+
T Consensus 139 ~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 139 TSSLDDLPKVTELHMSDN 156 (418)
T ss_pred hhhhhcchhhhhhhhccc
Confidence 567888888888654
No 46
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.63 E-value=0.016 Score=43.91 Aligned_cols=92 Identities=21% Similarity=0.148 Sum_probs=60.0
Q ss_pred HHhcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCC--CCCCCCCCCCCCCCceeeecccccceEeCcccc
Q 040143 86 VLDMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCA--NCTSLPAVGKLVSLKELTIRRMLVLRSIGSEIC 163 (232)
Q Consensus 86 ~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~--~~~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~ 163 (232)
.++.+..++.|++|.+.++....+-.-+. ..+++|..|.+.++. .++++-.+..+|.|++|.+.+.+--..-....+
T Consensus 56 ~l~~lp~l~rL~tLll~nNrIt~I~p~L~-~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~y 134 (233)
T KOG1644|consen 56 KLDNLPHLPRLHTLLLNNNRITRIDPDLD-TFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLY 134 (233)
T ss_pred hcccCCCccccceEEecCCcceeeccchh-hhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeE
Confidence 34445556789999988776665533333 246789999998765 345666688899999999877642211111000
Q ss_pred CCCCCccCCccceEeccC
Q 040143 164 GKDCSTPFQSLETLCFSD 181 (232)
Q Consensus 164 ~~~~~~~~p~L~~L~l~~ 181 (232)
.+..+|+|+.|++.+
T Consensus 135 ---vl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 135 ---VLYKLPSLRTLDFQK 149 (233)
T ss_pred ---EEEecCcceEeehhh
Confidence 124589999999865
No 47
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=95.61 E-value=0.0013 Score=56.95 Aligned_cols=52 Identities=27% Similarity=0.448 Sum_probs=24.8
Q ss_pred CceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC-CCCCCCCceeeec
Q 040143 96 IKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA-VGKLVSLKELTIR 150 (232)
Q Consensus 96 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~ 150 (232)
|+.|.+.+++...+|.-+. ....|.+|+.+.|. +..+|. ++.+.+|+.|.++
T Consensus 145 Lkvli~sNNkl~~lp~~ig--~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 145 LKVLIVSNNKLTSLPEEIG--LLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVR 197 (722)
T ss_pred ceeEEEecCccccCCcccc--cchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHh
Confidence 5555555544444555444 34455555555443 233443 4444444444443
No 48
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=95.27 E-value=0.0017 Score=56.22 Aligned_cols=123 Identities=24% Similarity=0.251 Sum_probs=77.6
Q ss_pred hcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC-CCCCCCCceeeecccccceEeCccccCCC
Q 040143 88 DMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA-VGKLVSLKELTIRRMLVLRSIGSEICGKD 166 (232)
Q Consensus 88 ~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~ 166 (232)
..++.+..|.+|+++.+....+|.-+++ --|+.|-++.+ +++.+|. ++-+++|..|+.+.| .+..++..+.+
T Consensus 115 ~~i~~L~~lt~l~ls~NqlS~lp~~lC~---lpLkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~-- 187 (722)
T KOG0532|consen 115 EAICNLEALTFLDLSSNQLSHLPDGLCD---LPLKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGY-- 187 (722)
T ss_pred hhhhhhhHHHHhhhccchhhcCChhhhc---CcceeEEEecC-ccccCCcccccchhHHHhhhhhh-hhhhchHHhhh--
Confidence 3444556777788877666667766652 34677766654 5778887 888899999998765 56666655444
Q ss_pred CCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCCC---CCCcceEEe
Q 040143 167 CSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPDH---LPALETLAL 230 (232)
Q Consensus 167 ~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~~---l~~L~~L~i 230 (232)
+.+|+.|.+.+. .+..+. .+.. --.|.+|+++++ |+. .+|-. |..|+.|.+
T Consensus 188 ----l~slr~l~vrRn-~l~~lp-----~El~-~LpLi~lDfScN-kis-~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 188 ----LTSLRDLNVRRN-HLEDLP-----EELC-SLPLIRLDFSCN-KIS-YLPVDFRKMRHLQVLQL 241 (722)
T ss_pred ----HHHHHHHHHhhh-hhhhCC-----HHHh-CCceeeeecccC-cee-ecchhhhhhhhheeeee
Confidence 777777777543 222222 2333 234778888755 888 88863 444555443
No 49
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.63 E-value=0.025 Score=24.83 Aligned_cols=17 Identities=35% Similarity=0.560 Sum_probs=9.6
Q ss_pred CcccEEeEcCCCCCCCCCC
Q 040143 201 PRLVELYIEWCPKLSGKLP 219 (232)
Q Consensus 201 p~L~~L~l~~c~~l~~~lp 219 (232)
|+|+.|++++| +++ .+|
T Consensus 1 ~~L~~L~l~~n-~L~-~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNN-RLT-SLP 17 (17)
T ss_dssp TT-SEEEETSS---S-SE-
T ss_pred CccCEEECCCC-CCC-CCc
Confidence 56788888888 466 554
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.63 E-value=0.01 Score=50.79 Aligned_cols=108 Identities=23% Similarity=0.179 Sum_probs=65.0
Q ss_pred HhcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCCCCCCCCCceeeecccccceEeCccccCCC
Q 040143 87 LDMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPAVGKLVSLKELTIRRMLVLRSIGSEICGKD 166 (232)
Q Consensus 87 ~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~ 166 (232)
...+..+.+|+.|++.++...++...+. .+++|++|+++.+ .++.+..+..++.|+.|++.++. +..+.
T Consensus 88 ~~~l~~~~~l~~l~l~~n~i~~i~~~l~--~~~~L~~L~ls~N-~I~~i~~l~~l~~L~~L~l~~N~-i~~~~------- 156 (414)
T KOG0531|consen 88 LNHLSKLKSLEALDLYDNKIEKIENLLS--SLVNLQVLDLSFN-KITKLEGLSTLTLLKELNLSGNL-ISDIS------- 156 (414)
T ss_pred hcccccccceeeeeccccchhhcccchh--hhhcchheecccc-ccccccchhhccchhhheeccCc-chhcc-------
Confidence 3345666788888887766555444222 4778888888875 36677778888888888887753 33332
Q ss_pred CCccCCccceEeccCCcccccccccCcCCc-cCCCCcccEEeEcCC
Q 040143 167 CSTPFQSLETLCFSDLPELEFWDTGNQTGY-VEIFPRLVELYIEWC 211 (232)
Q Consensus 167 ~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~-~~~lp~L~~L~l~~c 211 (232)
....+++|+.+++.++.. ..+. .. ...+++++.+.+..+
T Consensus 157 ~~~~l~~L~~l~l~~n~i-~~ie-----~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 157 GLESLKSLKLLDLSYNRI-VDIE-----NDELSELISLEELDLGGN 196 (414)
T ss_pred CCccchhhhcccCCcchh-hhhh-----hhhhhhccchHHHhccCC
Confidence 112266677777765431 1111 10 244666666666655
No 51
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.46 E-value=0.0035 Score=47.40 Aligned_cols=83 Identities=19% Similarity=0.263 Sum_probs=47.9
Q ss_pred CCccceEEEeCCCCCCCC--CCCCC-CCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcccccccccCcC
Q 040143 118 FSNMVTLKLIGCANCTSL--PAVGK-LVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQT 194 (232)
Q Consensus 118 l~~L~~L~l~~c~~~~~l--~~l~~-L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~ 194 (232)
++.++.|.+..|....+. ..++. .++|+.|+|++|+.+++-...- +..|++|+.|.|.+++....... ...
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~-----L~~lknLr~L~l~~l~~v~~~e~-~~~ 197 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC-----LLKLKNLRRLHLYDLPYVANLEL-VQR 197 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH-----HHHhhhhHHHHhcCchhhhchHH-HHH
Confidence 566777777777665542 22443 4788888888888776654321 23478888888877665432210 000
Q ss_pred CccCCCCcccEE
Q 040143 195 GYVEIFPRLVEL 206 (232)
Q Consensus 195 ~~~~~lp~L~~L 206 (232)
...+++|+++..
T Consensus 198 ~Le~aLP~c~I~ 209 (221)
T KOG3864|consen 198 QLEEALPKCDIV 209 (221)
T ss_pred HHHHhCccccee
Confidence 123456766554
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=94.36 E-value=0.0028 Score=51.66 Aligned_cols=12 Identities=25% Similarity=0.218 Sum_probs=7.0
Q ss_pred CCcccEEeEcCC
Q 040143 200 FPRLVELYIEWC 211 (232)
Q Consensus 200 lp~L~~L~l~~c 211 (232)
.|.|+.|++.+|
T Consensus 297 k~dL~kLnLngN 308 (382)
T KOG1909|consen 297 KPDLEKLNLNGN 308 (382)
T ss_pred chhhHHhcCCcc
Confidence 555555555555
No 53
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=93.84 E-value=0.045 Score=44.88 Aligned_cols=117 Identities=16% Similarity=0.095 Sum_probs=59.0
Q ss_pred hcCCCCCCCceEEEEeeCCCCCCC-----ccCCCCCCccceEEEeCCCCC-CCCC----CCCCCCCCceeeecccccceE
Q 040143 88 DMLQPHTNIKKLEITRYSGRKFPI-----WLGDPSFSNMVTLKLIGCANC-TSLP----AVGKLVSLKELTIRRMLVLRS 157 (232)
Q Consensus 88 ~~l~~~~~L~~L~l~~~~~~~~p~-----~~~~~~l~~L~~L~l~~c~~~-~~l~----~l~~L~~L~~L~l~~~~~l~~ 157 (232)
......++|+.+....+..-..+. .+. ..+.|+.+.+..+..- +.+. .+...|+|+.|+++++. .+.
T Consensus 151 kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~--~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~ 227 (382)
T KOG1909|consen 151 KKAASKPKLRVFICGRNRLENGGATALAEAFQ--SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTL 227 (382)
T ss_pred hccCCCcceEEEEeeccccccccHHHHHHHHH--hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhh
Confidence 334445677777664332111110 111 2356777777654421 1121 15678888888887653 111
Q ss_pred eCccccCCCCCccCCccceEeccCCcccccccccCcC---CccCCCCcccEEeEcCC
Q 040143 158 IGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQT---GYVEIFPRLVELYIEWC 211 (232)
Q Consensus 158 ~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~---~~~~~lp~L~~L~l~~c 211 (232)
-.....+ -....+|+|+.+.+.+|- ++.- |... .....+|+|+.+.+.+|
T Consensus 228 egs~~La-kaL~s~~~L~El~l~dcl-l~~~--Ga~a~~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 228 EGSVALA-KALSSWPHLRELNLGDCL-LENE--GAIAFVDALKESAPSLEVLELAGN 280 (382)
T ss_pred HHHHHHH-HHhcccchheeecccccc-cccc--cHHHHHHHHhccCCCCceeccCcc
Confidence 0100111 123447888888888874 2210 0000 01234899999998888
No 54
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.70 E-value=0.033 Score=26.20 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=15.3
Q ss_pred cccEEeEcCCCCCCCCCCCCCCC
Q 040143 202 RLVELYIEWCPKLSGKLPDHLPA 224 (232)
Q Consensus 202 ~L~~L~l~~c~~l~~~lp~~l~~ 224 (232)
+|+.|++++| +++ .+|..+.+
T Consensus 1 ~L~~Ldls~n-~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EES-EEGTTTTT
T ss_pred CccEEECCCC-cCE-eCChhhcC
Confidence 4788888888 887 77765544
No 55
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=93.55 E-value=0.0025 Score=53.18 Aligned_cols=64 Identities=19% Similarity=0.299 Sum_probs=28.6
Q ss_pred CccceEEEeCCCCCCCCC--CCC-CCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcccc
Q 040143 119 SNMVTLKLIGCANCTSLP--AVG-KLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELE 186 (232)
Q Consensus 119 ~~L~~L~l~~c~~~~~l~--~l~-~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~ 186 (232)
+++++|.+.+|.++++-. .++ ..++|+++.+..|..+.+....-.+ .++|+|+++.+++|+...
T Consensus 164 pnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la----~gC~kL~~lNlSwc~qi~ 230 (483)
T KOG4341|consen 164 PNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA----EGCRKLKYLNLSWCPQIS 230 (483)
T ss_pred CchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH----HhhhhHHHhhhccCchhh
Confidence 455555555555443221 121 2355555555555444433221111 235556666665555544
No 56
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=92.27 E-value=0.054 Score=46.34 Aligned_cols=97 Identities=18% Similarity=0.190 Sum_probs=65.2
Q ss_pred CCCccceEEEeCCCCCCCCCC-CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcccccccccCcCC
Q 040143 117 SFSNMVTLKLIGCANCTSLPA-VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTG 195 (232)
Q Consensus 117 ~l~~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~ 195 (232)
.+++|..+.+.++. +..+.. ++.+++|++|++++. .++.+. ++..++.|+.|.+.++. +..+.
T Consensus 93 ~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N-~I~~i~-------~l~~l~~L~~L~l~~N~-i~~~~------ 156 (414)
T KOG0531|consen 93 KLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFN-KITKLE-------GLSTLTLLKELNLSGNL-ISDIS------ 156 (414)
T ss_pred cccceeeeeccccc-hhhcccchhhhhcchheecccc-cccccc-------chhhccchhhheeccCc-chhcc------
Confidence 57899999998764 667777 889999999999875 455543 23347779999998764 33222
Q ss_pred ccCCCCcccEEeEcCCCCCCCCCC---CCCCCcceEEe
Q 040143 196 YVEIFPRLVELYIEWCPKLSGKLP---DHLPALETLAL 230 (232)
Q Consensus 196 ~~~~lp~L~~L~l~~c~~l~~~lp---~~l~~L~~L~i 230 (232)
+...+++|+.+++.++ .+...-+ .++.+++.+.+
T Consensus 157 ~~~~l~~L~~l~l~~n-~i~~ie~~~~~~~~~l~~l~l 193 (414)
T KOG0531|consen 157 GLESLKSLKLLDLSYN-RIVDIENDELSELISLEELDL 193 (414)
T ss_pred CCccchhhhcccCCcc-hhhhhhhhhhhhccchHHHhc
Confidence 2334889999999988 5441223 34555554443
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.19 E-value=0.084 Score=41.55 Aligned_cols=63 Identities=24% Similarity=0.274 Sum_probs=36.4
Q ss_pred CCCCCCceEEEEeeCCCC---CCCccCCCCCCccceEEEeCCCC--CCCCCCCCCCCCCceeeecccccc
Q 040143 91 QPHTNIKKLEITRYSGRK---FPIWLGDPSFSNMVTLKLIGCAN--CTSLPAVGKLVSLKELTIRRMLVL 155 (232)
Q Consensus 91 ~~~~~L~~L~l~~~~~~~---~p~~~~~~~l~~L~~L~l~~c~~--~~~l~~l~~L~~L~~L~l~~~~~l 155 (232)
..+++|++|.++.+.... ++-... ..++|+++.++++.. +..++.+..+.+|..|++.+|...
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e--~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAE--KAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhh--hCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 335677888776542211 221111 237788888877652 234455677777778887777533
No 58
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.08 E-value=0.017 Score=49.84 Aligned_cols=113 Identities=25% Similarity=0.254 Sum_probs=56.8
Q ss_pred CCCceEEEEeeCCCCC---CCccCCCCCCccceEEEeCC-CCCCCCC----C-CCCCCCCceeeecccccceEeCccccC
Q 040143 94 TNIKKLEITRYSGRKF---PIWLGDPSFSNMVTLKLIGC-ANCTSLP----A-VGKLVSLKELTIRRMLVLRSIGSEICG 164 (232)
Q Consensus 94 ~~L~~L~l~~~~~~~~---p~~~~~~~l~~L~~L~l~~c-~~~~~l~----~-l~~L~~L~~L~l~~~~~l~~~~~~~~~ 164 (232)
++|+.+.+.++..... -.... ..+.|+.|++++| ......+ . ...+++|+.+++++|..+.+......+
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALAL--KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHh--hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 5566666655433221 01111 2456777777652 2222211 1 233466777777666554443322222
Q ss_pred CCCCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCC
Q 040143 165 KDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLS 215 (232)
Q Consensus 165 ~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~ 215 (232)
...|+|+.|.+.+|..+.+-. +......+|+|+.|++++|..+.
T Consensus 266 ----~~c~~L~~L~l~~c~~lt~~g---l~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 266 ----SRCPNLETLSLSNCSNLTDEG---LVSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred ----hhCCCcceEccCCCCccchhH---HHHHHHhcCcccEEeeecCccch
Confidence 125677777776776543211 11123347778888888876653
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.92 E-value=0.15 Score=40.21 Aligned_cols=109 Identities=14% Similarity=0.124 Sum_probs=63.9
Q ss_pred CCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCC--CCCCCCCC-CCCCCCCceeeecccccceEeCccccCCCCCcc
Q 040143 94 TNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGC--ANCTSLPA-VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTP 170 (232)
Q Consensus 94 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c--~~~~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 170 (232)
..|+.|++.++..+.+... +.+++|++|.++.+ +-...++. ...+|+|+++.++++. +..+. -. ..+..
T Consensus 43 ~~le~ls~~n~gltt~~~~---P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~ls--tl--~pl~~ 114 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNF---PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLS--TL--RPLKE 114 (260)
T ss_pred cchhhhhhhccceeecccC---CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccccc--cc--chhhh
Confidence 4566666655433322221 24789999999987 33445555 4566999999998753 33221 00 12345
Q ss_pred CCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCC
Q 040143 171 FQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCP 212 (232)
Q Consensus 171 ~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~ 212 (232)
+++|..|++..|.....-.+ -......+|+|..|+-.++.
T Consensus 115 l~nL~~Ldl~n~~~~~l~dy--re~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTNLDDY--REKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hcchhhhhcccCCccccccH--HHHHHHHhhhhccccccccC
Confidence 77888888888764431000 00012347899988877663
No 60
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=90.45 E-value=0.016 Score=51.98 Aligned_cols=11 Identities=18% Similarity=0.205 Sum_probs=5.4
Q ss_pred CCccceEEEeC
Q 040143 118 FSNMVTLKLIG 128 (232)
Q Consensus 118 l~~L~~L~l~~ 128 (232)
++.|+||+|+.
T Consensus 208 l~~LkhLDlsy 218 (1096)
T KOG1859|consen 208 LPKLKHLDLSY 218 (1096)
T ss_pred ccccccccccc
Confidence 44555555544
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.11 E-value=0.014 Score=46.50 Aligned_cols=31 Identities=29% Similarity=0.308 Sum_probs=12.5
Q ss_pred CccceEEEeCCCCCCCCCCCCCCCCCceeeec
Q 040143 119 SNMVTLKLIGCANCTSLPAVGKLVSLKELTIR 150 (232)
Q Consensus 119 ~~L~~L~l~~c~~~~~l~~l~~L~~L~~L~l~ 150 (232)
+.|+.|.|+.+. ++.+..+..+++|++|+++
T Consensus 41 p~lEVLsLSvNk-IssL~pl~rCtrLkElYLR 71 (388)
T KOG2123|consen 41 PLLEVLSLSVNK-ISSLAPLQRCTRLKELYLR 71 (388)
T ss_pred ccceeEEeeccc-cccchhHHHHHHHHHHHHH
Confidence 334444444321 2333334444444444443
No 62
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=89.88 E-value=0.045 Score=45.75 Aligned_cols=113 Identities=14% Similarity=0.122 Sum_probs=52.9
Q ss_pred CCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC--CCCCCCCceeeecccccceEeCccccCCCCCccC
Q 040143 94 TNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPF 171 (232)
Q Consensus 94 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 171 (232)
+.-..+.++.+....+|+-... .+.+||.|+|+.+. ++.+-. +.-|++|..|-+.+.+.+++++...++. +
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~-~l~~LRrLdLS~N~-Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g-----L 139 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFK-TLHRLRRLDLSKNN-ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG-----L 139 (498)
T ss_pred CcceEEEeccCCcccCChhhcc-chhhhceecccccc-hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh-----H
Confidence 3445555555545555543221 35556666665543 333322 5555555555555555555555433321 3
Q ss_pred CccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC
Q 040143 172 QSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD 220 (232)
Q Consensus 172 p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~ 220 (232)
.+|+.|.+.-+ .+.... . .....+|+|..|.+++. ++. .++.
T Consensus 140 ~slqrLllNan-~i~Cir---~-~al~dL~~l~lLslyDn-~~q-~i~~ 181 (498)
T KOG4237|consen 140 SSLQRLLLNAN-HINCIR---Q-DALRDLPSLSLLSLYDN-KIQ-SICK 181 (498)
T ss_pred HHHHHHhcChh-hhcchh---H-HHHHHhhhcchhcccch-hhh-hhcc
Confidence 34444333211 011000 0 01123778888888776 555 5553
No 63
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=89.45 E-value=0.14 Score=42.91 Aligned_cols=80 Identities=16% Similarity=0.166 Sum_probs=52.5
Q ss_pred CCCCceEEEEeeCCCCC-CCccCCCCCCccceEEEeCCCCCCCCCC--CCCCCCCceeeecccccceEeCccccCCCCCc
Q 040143 93 HTNIKKLEITRYSGRKF-PIWLGDPSFSNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRMLVLRSIGSEICGKDCST 169 (232)
Q Consensus 93 ~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 169 (232)
+++|++|.++++....+ +.|+. .+..++.|++..+. ++.+.. +..+..|+.|++++. ++..+....+..
T Consensus 273 L~~L~~lnlsnN~i~~i~~~aFe--~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~~---- 344 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDGAFE--GAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGAFQT---- 344 (498)
T ss_pred cccceEeccCCCccchhhhhhhc--chhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCC-eeEEEecccccc----
Confidence 56888888887766554 44554 36788888887753 555554 778889999999875 455554333331
Q ss_pred cCCccceEeccC
Q 040143 170 PFQSLETLCFSD 181 (232)
Q Consensus 170 ~~p~L~~L~l~~ 181 (232)
.-+|..|.+..
T Consensus 345 -~~~l~~l~l~~ 355 (498)
T KOG4237|consen 345 -LFSLSTLNLLS 355 (498)
T ss_pred -cceeeeeehcc
Confidence 55666666643
No 64
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=89.07 E-value=0.012 Score=52.88 Aligned_cols=82 Identities=24% Similarity=0.190 Sum_probs=56.1
Q ss_pred cCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC
Q 040143 58 LGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA 137 (232)
Q Consensus 58 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~ 137 (232)
+.-++.++.|+++.+... -.+.+.-+++|+.|+|..+....+|..... -..|..|.|.++. ++.+..
T Consensus 183 Lqll~ale~LnLshNk~~----------~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~--gc~L~~L~lrnN~-l~tL~g 249 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFT----------KVDNLRRLPKLKHLDLSYNCLRHVPQLSMV--GCKLQLLNLRNNA-LTTLRG 249 (1096)
T ss_pred HHHHHHhhhhccchhhhh----------hhHHHHhcccccccccccchhccccccchh--hhhheeeeecccH-HHhhhh
Confidence 444567778888766321 112344468999999987766667765432 2358889998765 567777
Q ss_pred CCCCCCCceeeeccc
Q 040143 138 VGKLVSLKELTIRRM 152 (232)
Q Consensus 138 l~~L~~L~~L~l~~~ 152 (232)
+.+|.+|..|+++++
T Consensus 250 ie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYN 264 (1096)
T ss_pred HHhhhhhhccchhHh
Confidence 889999999999764
No 65
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=88.81 E-value=0.28 Score=23.96 Aligned_cols=16 Identities=31% Similarity=0.617 Sum_probs=12.9
Q ss_pred CCcccEEeEcCCCCCC
Q 040143 200 FPRLVELYIEWCPKLS 215 (232)
Q Consensus 200 lp~L~~L~l~~c~~l~ 215 (232)
.|+|++|++++|++++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 3788889999887776
No 66
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.64 E-value=0.089 Score=42.53 Aligned_cols=41 Identities=24% Similarity=0.233 Sum_probs=27.2
Q ss_pred ccccCcccCCCceEEEecCCCCCCchhhHHHHHhcC-CCCCCCceEEEEee
Q 040143 55 EASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDML-QPHTNIKKLEITRY 104 (232)
Q Consensus 55 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~ 104 (232)
.+.+.+++.|+.|+++++.-.. ....+ .|..+|+.|.+.|.
T Consensus 90 ~~ile~lP~l~~LNls~N~L~s---------~I~~lp~p~~nl~~lVLNgT 131 (418)
T KOG2982|consen 90 GAILEQLPALTTLNLSCNSLSS---------DIKSLPLPLKNLRVLVLNGT 131 (418)
T ss_pred HHHHhcCccceEeeccCCcCCC---------ccccCcccccceEEEEEcCC
Confidence 3457788999999998774321 22333 25578888888764
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=88.63 E-value=0.16 Score=43.78 Aligned_cols=64 Identities=23% Similarity=0.287 Sum_probs=34.3
Q ss_pred CCccceEEEeCCCCCCCCC--CCC-CCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCccc
Q 040143 118 FSNMVTLKLIGCANCTSLP--AVG-KLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPEL 185 (232)
Q Consensus 118 l~~L~~L~l~~c~~~~~l~--~l~-~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l 185 (232)
..+|+++.++.|....+.- .++ ..++|++|.+.+|..+.+...... ....|.|++|++.+|..+
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i----~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI----AERCPSLRELDLSGCHGL 308 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH----HHhcCcccEEeeecCccc
Confidence 3566777777665433221 122 256777777666655433222111 123666777777776655
No 68
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=85.40 E-value=0.022 Score=40.69 Aligned_cols=81 Identities=11% Similarity=0.119 Sum_probs=53.0
Q ss_pred CCceEEEEeeCCCCCCCccCC-CCCCccceEEEeCCCCCCCCCC--CCCCCCCceeeecccccceEeCccccCCCCCccC
Q 040143 95 NIKKLEITRYSGRKFPIWLGD-PSFSNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPF 171 (232)
Q Consensus 95 ~L~~L~l~~~~~~~~p~~~~~-~~l~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 171 (232)
.+..+++++|....+++.... ..-..|+.++|+++. .+++|. ..++|..+.+++.+. .+.++|.++.. +
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aa------m 99 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANN-EISDVPEELAA------M 99 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchh-hhhhchHHHhh------h
Confidence 456666666643333322110 124578888898875 467776 455678888988764 67888877544 8
Q ss_pred CccceEeccCCc
Q 040143 172 QSLETLCFSDLP 183 (232)
Q Consensus 172 p~L~~L~l~~~~ 183 (232)
|.|+.+.+...+
T Consensus 100 ~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 100 PALRSLNLRFNP 111 (177)
T ss_pred HHhhhcccccCc
Confidence 999999987654
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.89 E-value=0.11 Score=41.63 Aligned_cols=86 Identities=23% Similarity=0.178 Sum_probs=40.4
Q ss_pred CCCCCCCCCCCeEEecCCCCChhhhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHH
Q 040143 5 RSPLTRQTLSDFIVGRGIGSGLKDLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEE 84 (232)
Q Consensus 5 ~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 84 (232)
.+|..|++|.+...+. ..+..+.+.+.|+ .|.++. ..+.++.+.. -|.++++|+.|++.-+.=+.........
T Consensus 38 ~kMp~lEVLsLSvNkI---ssL~pl~rCtrLk-ElYLRk-N~I~sldEL~--YLknlpsLr~LWL~ENPCc~~ag~nYR~ 110 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKI---SSLAPLQRCTRLK-ELYLRK-NCIESLDELE--YLKNLPSLRTLWLDENPCCGEAGQNYRR 110 (388)
T ss_pred HhcccceeEEeecccc---ccchhHHHHHHHH-HHHHHh-cccccHHHHH--HHhcCchhhhHhhccCCcccccchhHHH
Confidence 3555666664433322 2233333333343 333322 2233333322 2677888888888644222222333444
Q ss_pred HHHhcCCCCCCCceEE
Q 040143 85 KVLDMLQPHTNIKKLE 100 (232)
Q Consensus 85 ~~~~~l~~~~~L~~L~ 100 (232)
.++..| ++|++|+
T Consensus 111 ~VLR~L---PnLkKLD 123 (388)
T KOG2123|consen 111 KVLRVL---PNLKKLD 123 (388)
T ss_pred HHHHHc---ccchhcc
Confidence 455555 5666665
No 70
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=81.79 E-value=0.51 Score=39.90 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=28.4
Q ss_pred cCCccceEeccCCcccccc--cccCcCCccCCCCcccEEeEcCCCCCC
Q 040143 170 PFQSLETLCFSDLPELEFW--DTGNQTGYVEIFPRLVELYIEWCPKLS 215 (232)
Q Consensus 170 ~~p~L~~L~l~~~~~l~~~--~~~~~~~~~~~lp~L~~L~l~~c~~l~ 215 (232)
..|.|+.|.+++|....+- . ........+..|+.+.+.+||.+.
T Consensus 370 ~C~~lr~lslshce~itD~gi~--~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIR--HLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred CCchhccCChhhhhhhhhhhhh--hhhhccccccccceeeecCCCCch
Confidence 3577888888877644321 1 011223457889999999998776
No 71
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=81.34 E-value=1.3 Score=21.31 Aligned_cols=19 Identities=42% Similarity=0.580 Sum_probs=15.3
Q ss_pred CCcccEEeEcCCCCCCCCCCC
Q 040143 200 FPRLVELYIEWCPKLSGKLPD 220 (232)
Q Consensus 200 lp~L~~L~l~~c~~l~~~lp~ 220 (232)
+++|+.|++.++ +++ .+|.
T Consensus 1 L~~L~~L~L~~N-~l~-~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNN-QLS-SLPP 19 (26)
T ss_pred CCCCCEEECCCC-cCC-cCCH
Confidence 467899999888 888 7775
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=81.34 E-value=1.3 Score=21.31 Aligned_cols=19 Identities=42% Similarity=0.580 Sum_probs=15.3
Q ss_pred CCcccEEeEcCCCCCCCCCCC
Q 040143 200 FPRLVELYIEWCPKLSGKLPD 220 (232)
Q Consensus 200 lp~L~~L~l~~c~~l~~~lp~ 220 (232)
+++|+.|++.++ +++ .+|.
T Consensus 1 L~~L~~L~L~~N-~l~-~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNN-QLS-SLPP 19 (26)
T ss_pred CCCCCEEECCCC-cCC-cCCH
Confidence 467899999888 888 7775
No 73
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=78.92 E-value=1.2 Score=35.89 Aligned_cols=105 Identities=16% Similarity=0.167 Sum_probs=57.9
Q ss_pred ChhhhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEe--cCCCCCCchhhHHHHHhcCCCCCCCceEEEE
Q 040143 25 GLKDLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGW--GSPFHSRNEIAEEKVLDMLQPHTNIKKLEIT 102 (232)
Q Consensus 25 ~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~--~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 102 (232)
.+..|..+..+. ++.+++...........-..+++..+|+..+++- .............-.++++-..++|+..+++
T Consensus 22 v~eel~~~d~~~-evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LS 100 (388)
T COG5238 22 VVEELEMMDELV-EVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLS 100 (388)
T ss_pred HHHHHHhhccee-EEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecc
Confidence 345555566666 6777653322111222222355556666666642 1111112223344456777778899999997
Q ss_pred eeCC-CCCCCccCC--CCCCccceEEEeCCC
Q 040143 103 RYSG-RKFPIWLGD--PSFSNMVTLKLIGCA 130 (232)
Q Consensus 103 ~~~~-~~~p~~~~~--~~l~~L~~L~l~~c~ 130 (232)
.+.. ..+|..+.+ ++.+.|+||.+++|.
T Consensus 101 DNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 101 DNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred ccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 6643 334533221 246899999999886
No 74
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=68.73 E-value=0.87 Score=32.77 Aligned_cols=65 Identities=22% Similarity=0.341 Sum_probs=45.6
Q ss_pred HhcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC-CCCCCCCceeeecccc
Q 040143 87 LDMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA-VGKLVSLKELTIRRML 153 (232)
Q Consensus 87 ~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~~~ 153 (232)
...+.....|...+++++....+|..+.. .|+.++.+.+..+ .+.++|. +..+|.|+.++++.++
T Consensus 46 vy~l~~~~el~~i~ls~N~fk~fp~kft~-kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 46 VYMLSKGYELTKISLSDNGFKKFPKKFTI-KFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNP 111 (177)
T ss_pred HHHHhCCceEEEEecccchhhhCCHHHhh-ccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCc
Confidence 33344446777788887777777765542 4667788888765 4677887 8889999999987653
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=66.98 E-value=24 Score=24.09 Aligned_cols=10 Identities=20% Similarity=0.468 Sum_probs=3.1
Q ss_pred cccCCCceEE
Q 040143 60 DKKGLEELSL 69 (232)
Q Consensus 60 ~l~~L~~L~l 69 (232)
+..+|+.+.+
T Consensus 10 ~~~~l~~i~~ 19 (129)
T PF13306_consen 10 NCSNLESITF 19 (129)
T ss_dssp T-TT--EEEE
T ss_pred CCCCCCEEEE
Confidence 3344454444
No 76
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=62.52 E-value=5.3 Score=19.60 Aligned_cols=18 Identities=39% Similarity=0.652 Sum_probs=14.1
Q ss_pred CcccEEeEcCCCCCCCCCCC
Q 040143 201 PRLVELYIEWCPKLSGKLPD 220 (232)
Q Consensus 201 p~L~~L~l~~c~~l~~~lp~ 220 (232)
++|+.|.++++ +++ .+|+
T Consensus 2 ~~L~~L~vs~N-~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNN-QLT-SLPE 19 (26)
T ss_pred cccceeecCCC-ccc-cCcc
Confidence 56888888887 788 7776
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=54.41 E-value=9.3 Score=17.80 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=8.8
Q ss_pred CCcccEEeEcCCCCCC
Q 040143 200 FPRLVELYIEWCPKLS 215 (232)
Q Consensus 200 lp~L~~L~l~~c~~l~ 215 (232)
+++|+.|++++| ++.
T Consensus 1 ~~~L~~L~l~~n-~i~ 15 (24)
T PF13516_consen 1 NPNLETLDLSNN-QIT 15 (24)
T ss_dssp -TT-SEEE-TSS-BEH
T ss_pred CCCCCEEEccCC-cCC
Confidence 367888888888 443
No 78
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=21.76 E-value=68 Score=15.59 Aligned_cols=14 Identities=29% Similarity=0.285 Sum_probs=9.1
Q ss_pred CcccEEeEcCCCCCC
Q 040143 201 PRLVELYIEWCPKLS 215 (232)
Q Consensus 201 p~L~~L~l~~c~~l~ 215 (232)
.+|+.|+++.+ +++
T Consensus 2 ~~L~~L~L~~N-kI~ 15 (26)
T smart00365 2 TNLEELDLSQN-KIK 15 (26)
T ss_pred CccCEEECCCC-ccc
Confidence 46777777766 554
Done!