Query 040143
Match_columns 232
No_of_seqs 137 out of 1601
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 08:27:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040143.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040143hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.7 3.5E-17 1.2E-21 133.7 11.4 204 4-230 100-308 (328)
2 4fcg_A Uncharacterized protein 99.6 4E-15 1.4E-19 121.5 10.0 184 3-211 122-311 (328)
3 1ogq_A PGIP-2, polygalacturona 99.5 7.8E-15 2.7E-19 118.9 4.0 112 27-152 70-184 (313)
4 3rgz_A Protein brassinosteroid 99.5 3.3E-14 1.1E-18 128.3 7.6 93 57-159 461-555 (768)
5 3rgz_A Protein brassinosteroid 99.5 6.6E-14 2.2E-18 126.4 7.5 154 56-231 484-712 (768)
6 3zyi_A Leucine-rich repeat-con 99.4 1.8E-12 6.2E-17 110.1 13.3 126 91-232 168-299 (452)
7 3zyj_A Leucine-rich repeat-con 99.4 2.5E-12 8.5E-17 108.8 13.8 151 58-232 132-288 (440)
8 4eco_A Uncharacterized protein 99.4 2E-13 6.9E-18 120.8 7.3 163 4-182 202-387 (636)
9 2xwt_C Thyrotropin receptor; s 99.4 1E-11 3.6E-16 96.4 16.0 177 28-232 50-235 (239)
10 4ecn_A Leucine-rich repeat pro 99.4 4.4E-13 1.5E-17 121.9 8.9 142 26-182 482-629 (876)
11 1h6u_A Internalin H; cell adhe 99.4 1.2E-12 4.1E-17 105.8 8.9 168 26-231 56-225 (308)
12 1ozn_A Reticulon 4 receptor; N 99.4 1.2E-11 4.1E-16 98.6 14.1 177 28-232 51-234 (285)
13 4ezg_A Putative uncharacterize 99.4 2.9E-12 9.8E-17 96.8 9.8 146 59-232 41-190 (197)
14 2id5_A Lingo-1, leucine rich r 99.4 4.6E-12 1.6E-16 108.1 11.9 32 198-231 245-280 (477)
15 3v47_A TOLL-like receptor 5B a 99.4 1.7E-11 5.8E-16 103.9 15.2 124 94-232 275-404 (455)
16 3rfs_A Internalin B, repeat mo 99.4 1.3E-11 4.3E-16 98.0 13.5 127 90-231 81-213 (272)
17 3v47_A TOLL-like receptor 5B a 99.4 5.3E-12 1.8E-16 107.0 12.0 33 198-231 344-379 (455)
18 4fmz_A Internalin; leucine ric 99.4 5.5E-12 1.9E-16 103.2 11.5 123 92-232 219-342 (347)
19 1p9a_G Platelet glycoprotein I 99.3 6.9E-12 2.3E-16 100.5 11.3 168 33-231 31-203 (290)
20 4fmz_A Internalin; leucine ric 99.3 4.8E-12 1.6E-16 103.5 10.1 176 25-231 58-251 (347)
21 3rfs_A Internalin B, repeat mo 99.3 4.7E-12 1.6E-16 100.4 9.7 166 17-211 47-215 (272)
22 1ogq_A PGIP-2, polygalacturona 99.3 1.7E-12 5.7E-17 105.2 7.1 200 4-232 72-277 (313)
23 3vq2_A TLR4, TOLL-like recepto 99.3 3.8E-12 1.3E-16 111.7 9.5 102 118-231 423-529 (606)
24 3oja_B Anopheles plasmodium-re 99.3 3.4E-12 1.2E-16 112.1 8.9 54 171-232 300-354 (597)
25 3zyi_A Leucine-rich repeat-con 99.3 6E-12 2E-16 106.9 9.9 177 28-232 94-275 (452)
26 2id5_A Lingo-1, leucine rich r 99.3 9.5E-12 3.3E-16 106.2 11.3 133 91-232 149-305 (477)
27 2z66_A Variable lymphocyte rec 99.3 2.4E-12 8.2E-17 103.7 6.5 129 90-232 122-257 (306)
28 1o6v_A Internalin A; bacterial 99.3 2.6E-11 9E-16 103.3 13.3 33 198-231 350-383 (466)
29 3o6n_A APL1; leucine-rich repe 99.3 5.2E-12 1.8E-16 105.1 8.6 100 118-232 247-348 (390)
30 3t6q_A CD180 antigen; protein- 99.3 9.9E-12 3.4E-16 109.0 10.5 37 4-43 274-310 (606)
31 2o6q_A Variable lymphocyte rec 99.3 7.5E-11 2.6E-15 93.3 14.6 151 57-231 56-213 (270)
32 1o6v_A Internalin A; bacterial 99.3 3.4E-11 1.2E-15 102.6 13.2 187 4-231 173-361 (466)
33 3oja_B Anopheles plasmodium-re 99.3 5.2E-12 1.8E-16 110.9 7.6 32 198-231 298-332 (597)
34 3zyj_A Leucine-rich repeat-con 99.3 2.6E-11 8.8E-16 102.6 11.6 176 28-232 83-264 (440)
35 1ozn_A Reticulon 4 receptor; N 99.3 6.3E-11 2.2E-15 94.4 13.0 173 33-232 32-210 (285)
36 1h6u_A Internalin H; cell adhe 99.3 3.3E-11 1.1E-15 97.3 11.2 167 28-232 36-204 (308)
37 2z66_A Variable lymphocyte rec 99.3 1.3E-11 4.5E-16 99.3 8.7 177 29-232 48-232 (306)
38 1h6t_A Internalin B; cell adhe 99.3 2.4E-11 8.3E-16 97.3 10.1 57 92-152 88-144 (291)
39 2z80_A TOLL-like receptor 2, v 99.3 3.9E-12 1.3E-16 104.6 5.5 33 198-232 274-310 (353)
40 3t6q_A CD180 antigen; protein- 99.3 2.3E-11 7.8E-16 106.7 10.3 130 91-232 373-509 (606)
41 3vq2_A TLR4, TOLL-like recepto 99.2 1.6E-11 5.4E-16 107.7 9.0 128 90-232 420-554 (606)
42 4ecn_A Leucine-rich repeat pro 99.2 3.6E-11 1.2E-15 109.5 11.0 156 58-231 591-784 (876)
43 2z63_A TOLL-like receptor 4, v 99.2 9.2E-12 3.2E-16 108.3 7.0 128 91-232 393-527 (570)
44 1xku_A Decorin; proteoglycan, 99.2 3.2E-11 1.1E-15 98.1 9.6 189 3-219 71-279 (330)
45 3bz5_A Internalin-J, INLJ; leu 99.2 1E-10 3.5E-15 99.5 12.9 30 199-229 231-260 (457)
46 3oja_A Leucine-rich immune mol 99.2 6.7E-12 2.3E-16 107.7 5.5 172 27-231 52-245 (487)
47 1xku_A Decorin; proteoglycan, 99.2 1.1E-10 3.6E-15 95.0 12.3 183 28-232 71-272 (330)
48 2z80_A TOLL-like receptor 2, v 99.2 2.1E-11 7E-16 100.2 8.1 161 28-215 71-235 (353)
49 4eco_A Uncharacterized protein 99.2 7.4E-12 2.5E-16 110.8 5.7 139 3-159 242-393 (636)
50 1wwl_A Monocyte differentiatio 99.2 3.7E-11 1.3E-15 97.1 9.2 88 59-152 118-211 (312)
51 3o6n_A APL1; leucine-rich repe 99.2 1.1E-10 3.6E-15 97.2 12.1 109 29-152 65-175 (390)
52 3o53_A Protein LRIM1, AGAP0063 99.2 9.2E-12 3.2E-16 100.9 4.7 54 171-232 190-246 (317)
53 1m9s_A Internalin B; cell inva 99.2 4E-11 1.4E-15 105.3 8.9 169 7-215 42-210 (605)
54 2z7x_B TOLL-like receptor 1, v 99.2 2E-10 7E-15 98.9 12.7 36 117-152 322-358 (520)
55 1m9s_A Internalin B; cell inva 99.2 6E-11 2.1E-15 104.2 9.5 167 28-232 38-206 (605)
56 1h6t_A Internalin B; cell adhe 99.2 4.1E-11 1.4E-15 96.0 7.7 168 8-215 46-213 (291)
57 2ell_A Acidic leucine-rich nuc 99.2 1.7E-10 5.6E-15 84.7 9.6 138 61-220 23-164 (168)
58 4glp_A Monocyte differentiatio 99.2 3.1E-11 1.1E-15 97.5 6.1 111 31-152 89-207 (310)
59 2xwt_C Thyrotropin receptor; s 99.2 3.8E-10 1.3E-14 87.6 12.1 170 34-232 32-214 (239)
60 2z62_A TOLL-like receptor 4, v 99.1 1.8E-10 6.2E-15 91.3 9.9 175 28-231 47-232 (276)
61 2z81_A CD282 antigen, TOLL-lik 99.1 5.9E-11 2E-15 102.9 7.5 178 27-231 44-231 (549)
62 3bz5_A Internalin-J, INLJ; leu 99.1 9.4E-10 3.2E-14 93.6 14.6 186 6-231 40-241 (457)
63 3j0a_A TOLL-like receptor 5; m 99.1 1.4E-10 4.7E-15 105.7 10.0 32 199-231 312-346 (844)
64 2ft3_A Biglycan; proteoglycan, 99.1 1.1E-10 3.7E-15 95.1 8.3 39 3-43 73-111 (332)
65 2o6q_A Variable lymphocyte rec 99.1 4.4E-10 1.5E-14 88.9 11.5 158 28-212 56-216 (270)
66 2ast_B S-phase kinase-associat 99.1 1.3E-12 4.5E-17 106.4 -3.4 15 58-72 138-152 (336)
67 2z63_A TOLL-like receptor 4, v 99.1 7.1E-11 2.4E-15 102.7 7.2 128 92-232 371-503 (570)
68 1ziw_A TOLL-like receptor 3; i 99.1 1.5E-10 5.1E-15 102.9 9.0 41 28-72 400-440 (680)
69 4ezg_A Putative uncharacterize 99.1 3.3E-10 1.1E-14 85.4 9.2 122 94-232 44-168 (197)
70 2z7x_B TOLL-like receptor 1, v 99.1 2.5E-10 8.4E-15 98.4 9.6 147 59-232 321-477 (520)
71 3m19_A Variable lymphocyte rec 99.1 7.3E-10 2.5E-14 86.6 11.5 132 58-211 55-189 (251)
72 1wwl_A Monocyte differentiatio 99.1 8.3E-11 2.8E-15 95.0 6.2 195 6-232 93-305 (312)
73 1p9a_G Platelet glycoprotein I 99.1 4.4E-10 1.5E-14 89.9 10.3 172 28-232 5-181 (290)
74 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 5.6E-10 1.9E-14 97.2 11.5 109 117-231 351-481 (562)
75 4ay9_X Follicle-stimulating ho 99.1 6.1E-10 2.1E-14 91.4 11.0 178 28-231 49-254 (350)
76 2ast_B S-phase kinase-associat 99.1 4.9E-12 1.7E-16 103.0 -1.7 180 29-232 89-281 (336)
77 2z81_A CD282 antigen, TOLL-lik 99.1 2.4E-10 8.3E-15 99.0 8.1 173 33-232 26-205 (549)
78 3j0a_A TOLL-like receptor 5; m 99.1 1.7E-09 5.8E-14 98.6 13.4 29 201-230 526-554 (844)
79 2ft3_A Biglycan; proteoglycan, 99.0 1.6E-09 5.5E-14 88.1 11.5 40 28-72 73-112 (332)
80 1jl5_A Outer protein YOPM; leu 99.0 3.8E-09 1.3E-13 89.7 14.0 57 90-152 191-247 (454)
81 2je0_A Acidic leucine-rich nuc 99.0 1.3E-10 4.4E-15 83.6 4.0 124 93-232 16-149 (149)
82 3oja_A Leucine-rich immune mol 99.0 1.9E-10 6.5E-15 98.6 5.7 109 91-214 141-250 (487)
83 3e6j_A Variable lymphocyte rec 99.0 2.9E-09 9.9E-14 82.2 11.8 128 62-211 40-169 (229)
84 4glp_A Monocyte differentiatio 99.0 4.1E-09 1.4E-13 84.9 13.0 62 91-153 114-180 (310)
85 3o53_A Protein LRIM1, AGAP0063 99.0 1.5E-10 5E-15 93.8 4.3 184 7-231 33-222 (317)
86 2o6s_A Variable lymphocyte rec 99.0 7.9E-10 2.7E-14 83.9 8.2 138 58-224 48-187 (208)
87 2z62_A TOLL-like receptor 4, v 99.0 3.3E-10 1.1E-14 89.7 6.1 180 3-211 47-234 (276)
88 1xeu_A Internalin C; cellular 99.0 1.7E-09 5.8E-14 85.3 9.4 151 27-215 35-185 (263)
89 1ziw_A TOLL-like receptor 3; i 99.0 1.8E-09 6.1E-14 96.0 10.2 35 118-152 404-440 (680)
90 1xeu_A Internalin C; cellular 99.0 1.2E-09 4.2E-14 86.1 8.1 142 58-231 37-180 (263)
91 3m19_A Variable lymphocyte rec 99.0 5.2E-09 1.8E-13 81.8 10.9 126 90-231 55-187 (251)
92 2v9t_B SLIT homolog 2 protein 98.9 6E-09 2E-13 79.9 10.7 128 62-211 32-162 (220)
93 2ell_A Acidic leucine-rich nuc 98.9 1.1E-09 3.8E-14 80.2 6.2 107 94-215 24-133 (168)
94 4ay9_X Follicle-stimulating ho 98.9 2.9E-08 1E-12 81.3 15.1 177 34-231 31-231 (350)
95 2o6s_A Variable lymphocyte rec 98.9 1.9E-08 6.4E-13 76.2 12.6 130 61-211 27-158 (208)
96 3a79_B TLR6, VLRB.59, TOLL-lik 98.9 1.5E-08 5.2E-13 88.1 13.6 147 59-232 350-506 (562)
97 1jl5_A Outer protein YOPM; leu 98.9 1.1E-08 3.8E-13 86.8 11.6 57 90-152 149-205 (454)
98 2ca6_A RAN GTPase-activating p 98.9 4E-11 1.4E-15 99.6 -4.1 127 94-231 159-311 (386)
99 3g06_A SSPH2 (leucine-rich rep 98.9 5.6E-08 1.9E-12 85.6 15.5 31 199-231 239-269 (622)
100 1a9n_A U2A', U2A'; complex (nu 98.9 1.9E-09 6.4E-14 79.7 5.2 54 95-152 43-98 (176)
101 3g06_A SSPH2 (leucine-rich rep 98.8 1.1E-07 3.9E-12 83.7 15.5 51 171-232 240-293 (622)
102 3e6j_A Variable lymphocyte rec 98.8 3.4E-08 1.2E-12 76.1 10.5 109 57-182 59-169 (229)
103 4g8a_A TOLL-like receptor 4; l 98.8 2.9E-08 9.9E-13 87.0 10.3 131 62-215 52-186 (635)
104 2ca6_A RAN GTPase-activating p 98.8 1.6E-10 5.3E-15 96.1 -4.7 110 119-232 159-283 (386)
105 2v70_A SLIT-2, SLIT homolog 2 98.7 5.9E-08 2E-12 74.3 10.0 106 92-211 55-163 (220)
106 2xot_A Amphoterin-induced prot 98.7 7.9E-08 2.7E-12 79.1 10.7 148 62-231 39-197 (361)
107 4g8a_A TOLL-like receptor 4; l 98.7 4.7E-08 1.6E-12 85.6 9.5 126 93-232 444-576 (635)
108 2v9t_B SLIT homolog 2 protein 98.7 8.9E-08 3.1E-12 73.3 9.3 129 34-183 33-163 (220)
109 2je0_A Acidic leucine-rich nuc 98.7 3.5E-09 1.2E-13 76.0 1.2 105 91-209 39-148 (149)
110 1dce_A Protein (RAB geranylger 98.7 4.6E-08 1.6E-12 85.3 7.8 119 94-230 441-567 (567)
111 1w8a_A SLIT protein; signaling 98.6 1.6E-07 5.6E-12 70.2 9.3 108 94-215 29-139 (192)
112 2o6r_A Variable lymphocyte rec 98.6 5.6E-07 1.9E-11 66.2 11.6 108 94-215 28-137 (177)
113 2wfh_A SLIT homolog 2 protein 98.6 2.9E-07 9.9E-12 69.0 9.7 104 94-211 31-136 (193)
114 2xot_A Amphoterin-induced prot 98.6 1.2E-07 4.1E-12 78.0 7.5 135 58-211 59-199 (361)
115 4b8c_D Glucose-repressible alc 98.5 3.2E-08 1.1E-12 88.8 3.7 106 90-211 220-326 (727)
116 2o6r_A Variable lymphocyte rec 98.5 1E-06 3.4E-11 64.9 10.2 105 62-183 28-135 (177)
117 2v70_A SLIT-2, SLIT homolog 2 98.5 3.3E-07 1.1E-11 70.1 7.7 109 58-183 53-164 (220)
118 1w8a_A SLIT protein; signaling 98.5 7.8E-07 2.7E-11 66.5 9.3 103 63-183 30-137 (192)
119 2wfh_A SLIT homolog 2 protein 98.5 8.7E-07 3E-11 66.4 9.3 104 62-183 31-137 (193)
120 3ogk_B Coronatine-insensitive 98.5 4.4E-08 1.5E-12 85.5 2.3 57 171-232 462-522 (592)
121 4b8c_D Glucose-repressible alc 98.5 4.4E-08 1.5E-12 87.9 2.4 109 56-183 218-327 (727)
122 3ogk_B Coronatine-insensitive 98.5 2.4E-09 8.1E-14 93.5 -5.9 32 199-230 340-385 (592)
123 1dce_A Protein (RAB geranylger 98.4 2.9E-07 9.9E-12 80.3 4.9 124 63-208 442-567 (567)
124 3goz_A Leucine-rich repeat-con 98.4 8.3E-09 2.8E-13 85.0 -4.6 16 27-43 44-60 (362)
125 3cvr_A Invasion plasmid antige 98.4 3.5E-06 1.2E-10 73.4 11.5 148 34-231 60-215 (571)
126 1z7x_W Ribonuclease inhibitor; 98.4 2.9E-09 1E-13 90.1 -7.7 59 171-231 198-264 (461)
127 1a9n_A U2A', U2A'; complex (nu 98.3 1.2E-06 4.2E-11 64.3 6.9 126 91-231 16-148 (176)
128 2p1m_B Transport inhibitor res 98.3 2E-08 7E-13 87.6 -3.3 34 118-151 396-441 (594)
129 3e4g_A ATP synthase subunit S, 98.3 1.5E-07 5.1E-12 69.2 1.7 89 120-215 62-153 (176)
130 2r9u_A Variable lymphocyte rec 98.3 3.9E-06 1.3E-10 61.7 9.3 80 94-182 33-115 (174)
131 2ra8_A Uncharacterized protein 98.3 2.7E-07 9.2E-12 76.0 2.9 161 57-231 134-315 (362)
132 1z7x_W Ribonuclease inhibitor; 98.3 1.7E-08 5.7E-13 85.5 -4.6 110 119-231 313-435 (461)
133 3g39_A Variable lymphocyte rec 98.3 4.2E-06 1.5E-10 61.2 8.9 80 94-182 30-112 (170)
134 2p1m_B Transport inhibitor res 98.3 5.2E-08 1.8E-12 85.0 -2.0 85 60-152 128-221 (594)
135 3cvr_A Invasion plasmid antige 98.2 9E-06 3.1E-10 70.8 11.1 130 63-232 60-189 (571)
136 1ds9_A Outer arm dynein; leuci 98.2 1.7E-08 5.9E-13 75.9 -6.6 121 92-229 46-180 (198)
137 3goz_A Leucine-rich repeat-con 98.1 5.6E-08 1.9E-12 80.0 -4.1 169 33-211 80-263 (362)
138 2r9u_A Variable lymphocyte rec 98.1 9.4E-06 3.2E-10 59.6 7.6 81 62-152 33-115 (174)
139 2ifg_A High affinity nerve gro 98.1 3.2E-05 1.1E-09 62.9 10.6 98 99-211 13-113 (347)
140 3g39_A Variable lymphocyte rec 98.0 1.8E-05 6.2E-10 57.8 7.8 81 62-152 30-112 (170)
141 1ds9_A Outer arm dynein; leuci 98.0 1.1E-07 3.9E-12 71.4 -4.8 131 57-207 43-180 (198)
142 3e4g_A ATP synthase subunit S, 97.9 1.7E-06 5.7E-11 63.6 0.4 87 94-187 61-154 (176)
143 2ra8_A Uncharacterized protein 97.9 1.2E-05 4.1E-10 66.1 4.7 160 61-231 106-287 (362)
144 2ifg_A High affinity nerve gro 97.9 5.3E-05 1.8E-09 61.6 8.4 86 86-182 24-113 (347)
145 3un9_A NLR family member X1; l 96.6 7.4E-06 2.5E-10 67.7 -9.9 90 119-211 155-249 (372)
146 3sb4_A Hypothetical leucine ri 96.5 0.012 4E-07 47.3 8.5 97 118-230 225-328 (329)
147 3sb4_A Hypothetical leucine ri 96.1 0.017 5.9E-07 46.3 7.6 101 93-208 225-328 (329)
148 3un9_A NLR family member X1; l 94.8 0.00014 4.9E-09 59.9 -9.3 139 33-183 101-250 (372)
149 1io0_A Tropomodulin; LRR prote 94.4 0.002 6.7E-08 47.5 -3.0 117 58-182 32-161 (185)
150 3rw6_A Nuclear RNA export fact 94.4 0.0056 1.9E-07 47.9 -0.6 34 118-152 169-206 (267)
151 3rw6_A Nuclear RNA export fact 94.0 0.038 1.3E-06 43.2 3.4 81 139-229 167-257 (267)
152 4fdw_A Leucine rich hypothetic 91.6 1.1 3.9E-05 36.9 9.3 28 200-230 299-330 (401)
153 1io0_A Tropomodulin; LRR prote 89.5 0.062 2.1E-06 39.3 -0.2 119 28-153 31-162 (185)
154 4fdw_A Leucine rich hypothetic 89.3 8.1 0.00028 31.7 12.6 97 118-230 270-377 (401)
155 3rfe_A Platelet glycoprotein I 85.4 0.86 2.9E-05 31.1 3.7 33 119-152 31-65 (130)
156 3rfe_A Platelet glycoprotein I 67.5 2.5 8.4E-05 28.8 1.8 38 93-131 30-67 (130)
157 4gt6_A Cell surface protein; l 50.1 75 0.0026 25.4 8.2 11 200-210 356-366 (394)
158 4h09_A Hypothetical leucine ri 48.2 79 0.0027 25.0 8.0 53 119-179 263-317 (379)
159 4fs7_A Uncharacterized protein 36.4 1.1E+02 0.0037 24.5 7.1 10 200-209 365-374 (394)
160 1pgv_A TMD-1, tropomodulin TMD 32.7 26 0.00088 25.7 2.4 91 32-129 40-136 (197)
161 4gt6_A Cell surface protein; l 32.0 1.9E+02 0.0066 23.0 9.8 78 138-231 284-365 (394)
162 4h09_A Hypothetical leucine ri 29.9 1.4E+02 0.0047 23.6 6.7 54 118-179 285-340 (379)
163 4fs7_A Uncharacterized protein 28.9 92 0.0032 24.9 5.4 30 118-149 296-327 (394)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.72 E-value=3.5e-17 Score=133.69 Aligned_cols=204 Identities=22% Similarity=0.230 Sum_probs=136.8
Q ss_pred CCCCCCCCCCCCeEEecCCCCChhhhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCch-hh
Q 040143 4 ERSPLTRQTLSDFIVGRGIGSGLKDLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNE-IA 82 (232)
Q Consensus 4 i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~ 82 (232)
++++++|++|++..... ......++++++|+ .|++.+.. +.. .+..++++++|++|++++|........ ..
T Consensus 100 l~~l~~L~~L~L~~n~l--~~lp~~~~~l~~L~-~L~Ls~n~-l~~----lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~ 171 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGL--MELPDTMQQFAGLE-TLTLARNP-LRA----LPASIASLNRLRELSIRACPELTELPEPLA 171 (328)
T ss_dssp GGGGTTCSEEEEESSCC--CCCCSCGGGGTTCS-EEEEESCC-CCC----CCGGGGGCTTCCEEEEEEETTCCCCCSCSE
T ss_pred hhhCCCCCEEECCCCCc--cchhHHHhccCCCC-EEECCCCc-ccc----CcHHHhcCcCCCEEECCCCCCccccChhHh
Confidence 45566677664332211 12233466777777 78876532 222 234577888999999988643221100 00
Q ss_pred HHHHHhcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC-CCCCCCCceeeecccccceEeCcc
Q 040143 83 EEKVLDMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA-VGKLVSLKELTIRRMLVLRSIGSE 161 (232)
Q Consensus 83 ~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~ 161 (232)
.......+..+++|++|+++++....+|.++. .+++|++|++++|.. ..+|. ++.+++|++|++++|...+.++..
T Consensus 172 ~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~--~l~~L~~L~L~~N~l-~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~ 248 (328)
T 4fcg_A 172 STDASGEHQGLVNLQSLRLEWTGIRSLPASIA--NLQNLKSLKIRNSPL-SALGPAIHHLPKLEELDLRGCTALRNYPPI 248 (328)
T ss_dssp EEC-CCCEEESTTCCEEEEEEECCCCCCGGGG--GCTTCCEEEEESSCC-CCCCGGGGGCTTCCEEECTTCTTCCBCCCC
T ss_pred hccchhhhccCCCCCEEECcCCCcCcchHhhc--CCCCCCEEEccCCCC-CcCchhhccCCCCCEEECcCCcchhhhHHH
Confidence 00001112236899999999988778888776 588999999999864 45665 889999999999998877776654
Q ss_pred ccCCCCCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC---CCCCcceEEe
Q 040143 162 ICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD---HLPALETLAL 230 (232)
Q Consensus 162 ~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~---~l~~L~~L~i 230 (232)
+.+ +++|++|++++|.....+. ...+.+++|+.|++++|.... .+|. .+++|+.+.+
T Consensus 249 ~~~------l~~L~~L~L~~n~~~~~~p-----~~~~~l~~L~~L~L~~n~~~~-~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 249 FGG------RAPLKRLILKDCSNLLTLP-----LDIHRLTQLEKLDLRGCVNLS-RLPSLIAQLPANCIILV 308 (328)
T ss_dssp TTC------CCCCCEEECTTCTTCCBCC-----TTGGGCTTCCEEECTTCTTCC-CCCGGGGGSCTTCEEEC
T ss_pred hcC------CCCCCEEECCCCCchhhcc-----hhhhcCCCCCEEeCCCCCchh-hccHHHhhccCceEEeC
Confidence 433 8999999999987665444 345679999999999995555 8886 4566666654
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.59 E-value=4e-15 Score=121.47 Aligned_cols=184 Identities=17% Similarity=0.160 Sum_probs=135.0
Q ss_pred CCCCCCCCCCCCCeEEecCCCCChhhhhcccCCCceEEEcccCCCCChhhhc-----ccccCcccCCCceEEEecCCCCC
Q 040143 3 MERSPLTRQTLSDFIVGRGIGSGLKDLRNLTFLRGKLCISRLENANDSWDAR-----EASLGDKKGLEELSLGWGSPFHS 77 (232)
Q Consensus 3 ~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~-----~~~l~~l~~L~~L~l~~~~~~~~ 77 (232)
.++++++|++|++..... ......+.++++|+ .|.+.++.......... ...+.++++|++|+++++.-..
T Consensus 122 ~~~~l~~L~~L~Ls~n~l--~~lp~~l~~l~~L~-~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~- 197 (328)
T 4fcg_A 122 TMQQFAGLETLTLARNPL--RALPASIASLNRLR-ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS- 197 (328)
T ss_dssp CGGGGTTCSEEEEESCCC--CCCCGGGGGCTTCC-EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC-
T ss_pred HHhccCCCCEEECCCCcc--ccCcHHHhcCcCCC-EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc-
Confidence 356777788775432222 23345678888898 89887654443332211 1124458999999999885321
Q ss_pred CchhhHHHHHhcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC-CCCCCCCceeeecccccce
Q 040143 78 RNEIAEEKVLDMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA-VGKLVSLKELTIRRMLVLR 156 (232)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~~~~l~ 156 (232)
+...+..+++|++|+++++....+|..+. .+++|++|++++|...+.+|. ++.+++|++|++++|...+
T Consensus 198 --------lp~~l~~l~~L~~L~L~~N~l~~l~~~l~--~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 198 --------LPASIANLQNLKSLKIRNSPLSALGPAIH--HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp --------CCGGGGGCTTCCEEEEESSCCCCCCGGGG--GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred --------chHhhcCCCCCCEEEccCCCCCcCchhhc--cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence 22335556899999999988888887765 589999999999998888887 9999999999999998888
Q ss_pred EeCccccCCCCCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCC
Q 040143 157 SIGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWC 211 (232)
Q Consensus 157 ~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c 211 (232)
.++..+.. +++|++|++++|.....++ ...+.+++|+.+.+...
T Consensus 268 ~~p~~~~~------l~~L~~L~L~~n~~~~~iP-----~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 268 TLPLDIHR------LTQLEKLDLRGCVNLSRLP-----SLIAQLPANCIILVPPH 311 (328)
T ss_dssp BCCTTGGG------CTTCCEEECTTCTTCCCCC-----GGGGGSCTTCEEECCGG
T ss_pred hcchhhhc------CCCCCEEeCCCCCchhhcc-----HHHhhccCceEEeCCHH
Confidence 77755443 9999999999988666544 46678999999988753
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.50 E-value=7.8e-15 Score=118.94 Aligned_cols=112 Identities=20% Similarity=0.273 Sum_probs=48.6
Q ss_pred hhhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCC
Q 040143 27 KDLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSG 106 (232)
Q Consensus 27 ~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 106 (232)
..++++++|+ .|++.+...+ ....+..++++++|++|+++++.-.. .....+..+++|++|+++++..
T Consensus 70 ~~l~~l~~L~-~L~L~~~n~l---~~~~p~~l~~l~~L~~L~Ls~n~l~~--------~~p~~~~~l~~L~~L~Ls~N~l 137 (313)
T 1ogq_A 70 SSLANLPYLN-FLYIGGINNL---VGPIPPAIAKLTQLHYLYITHTNVSG--------AIPDFLSQIKTLVTLDFSYNAL 137 (313)
T ss_dssp GGGGGCTTCS-EEEEEEETTE---ESCCCGGGGGCTTCSEEEEEEECCEE--------ECCGGGGGCTTCCEEECCSSEE
T ss_pred hhHhCCCCCC-eeeCCCCCcc---cccCChhHhcCCCCCEEECcCCeeCC--------cCCHHHhCCCCCCEEeCCCCcc
Confidence 3455555555 5555421111 11112234555566666665543210 0111223345555555544433
Q ss_pred C-CCCCccCCCCCCccceEEEeCCCCCCCCCC-CCCCC-CCceeeeccc
Q 040143 107 R-KFPIWLGDPSFSNMVTLKLIGCANCTSLPA-VGKLV-SLKELTIRRM 152 (232)
Q Consensus 107 ~-~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-l~~L~-~L~~L~l~~~ 152 (232)
. .+|.++. .+++|++|++++|.....+|. ++.++ +|++|+++++
T Consensus 138 ~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 138 SGTLPPSIS--SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp ESCCCGGGG--GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred CCcCChHHh--cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence 2 2344433 245555555555543333443 44444 5555555443
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.49 E-value=3.3e-14 Score=128.30 Aligned_cols=93 Identities=26% Similarity=0.326 Sum_probs=57.7
Q ss_pred ccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCC-CCCCccCCCCCCccceEEEeCCCCCCCC
Q 040143 57 SLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGR-KFPIWLGDPSFSNMVTLKLIGCANCTSL 135 (232)
Q Consensus 57 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~l~~c~~~~~l 135 (232)
.+..+++|++|+++++.-... ....+..+++|++|+++++... .+|.|+. .+++|++|++++|...+.+
T Consensus 461 ~~~~l~~L~~L~L~~N~l~~~--------~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~ 530 (768)
T 3rgz_A 461 ELMYVKTLETLILDFNDLTGE--------IPSGLSNCTNLNWISLSNNRLTGEIPKWIG--RLENLAILKLSNNSFSGNI 530 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSC--------CCGGGGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCEEEC
T ss_pred HHcCCCCceEEEecCCcccCc--------CCHHHhcCCCCCEEEccCCccCCcCChHHh--cCCCCCEEECCCCcccCcC
Confidence 345556666666655532210 1222344577888888776655 3677766 4778888888887765566
Q ss_pred CC-CCCCCCCceeeecccccceEeC
Q 040143 136 PA-VGKLVSLKELTIRRMLVLRSIG 159 (232)
Q Consensus 136 ~~-l~~L~~L~~L~l~~~~~l~~~~ 159 (232)
|. ++.+++|++|+++++.-...+|
T Consensus 531 p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 531 PAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESBCC
T ss_pred CHHHcCCCCCCEEECCCCccCCcCC
Confidence 65 7778888888887764333333
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.46 E-value=6.6e-14 Score=126.38 Aligned_cols=154 Identities=21% Similarity=0.206 Sum_probs=90.8
Q ss_pred cccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCC-CCCCccCCCCCCccceEEEeCCCCCCC
Q 040143 56 ASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGR-KFPIWLGDPSFSNMVTLKLIGCANCTS 134 (232)
Q Consensus 56 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~l~~c~~~~~ 134 (232)
..++++++|++|+++++.-... +...+..+++|++|+++++... .+|.++. .+++|++|++++|...+.
T Consensus 484 ~~l~~l~~L~~L~L~~N~l~~~--------~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 484 SGLSNCTNLNWISLSNNRLTGE--------IPKWIGRLENLAILKLSNNSFSGNIPAELG--DCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSC--------CCGGGGGCTTCCEEECCSSCCEEECCGGGG--GCTTCCEEECCSSEEESB
T ss_pred HHHhcCCCCCEEEccCCccCCc--------CChHHhcCCCCCEEECCCCcccCcCCHHHc--CCCCCCEEECCCCccCCc
Confidence 3467778888888877643211 1122334567888887766554 3565555 467777777776654433
Q ss_pred CCC-----------------------------------------------------------------------CCCCCC
Q 040143 135 LPA-----------------------------------------------------------------------VGKLVS 143 (232)
Q Consensus 135 l~~-----------------------------------------------------------------------l~~L~~ 143 (232)
+|. ++.+++
T Consensus 554 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~ 633 (768)
T 3rgz_A 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633 (768)
T ss_dssp CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBC
T ss_pred CChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccc
Confidence 332 333556
Q ss_pred CceeeecccccceEeCccccCCCCCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC---
Q 040143 144 LKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD--- 220 (232)
Q Consensus 144 L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~--- 220 (232)
|++|+++++.-...+|.++. .+++|+.|+++++. +. |.++...+.+++|+.|++++| ++.|.+|.
T Consensus 634 L~~LdLs~N~l~g~ip~~l~------~l~~L~~L~Ls~N~-l~----g~ip~~l~~L~~L~~LdLs~N-~l~g~ip~~l~ 701 (768)
T 3rgz_A 634 MMFLDMSYNMLSGYIPKEIG------SMPYLFILNLGHND-IS----GSIPDEVGDLRGLNILDLSSN-KLDGRIPQAMS 701 (768)
T ss_dssp CCEEECCSSCCBSCCCGGGG------GCTTCCEEECCSSC-CC----SCCCGGGGGCTTCCEEECCSS-CCEECCCGGGG
T ss_pred ccEEECcCCcccccCCHHHh------ccccCCEEeCcCCc-cC----CCCChHHhCCCCCCEEECCCC-cccCcCChHHh
Confidence 66666666543334443332 36777777776653 22 223345566777777777777 66667774
Q ss_pred CCCCcceEEeC
Q 040143 221 HLPALETLALS 231 (232)
Q Consensus 221 ~l~~L~~L~i~ 231 (232)
.+++|+.|+++
T Consensus 702 ~l~~L~~L~ls 712 (768)
T 3rgz_A 702 ALTMLTEIDLS 712 (768)
T ss_dssp GCCCCSEEECC
T ss_pred CCCCCCEEECc
Confidence 35666776665
No 6
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.42 E-value=1.8e-12 Score=110.07 Aligned_cols=126 Identities=21% Similarity=0.277 Sum_probs=77.9
Q ss_pred CCCCCCceEEEEeeCCCC-CCC-ccCCCCCCccceEEEeCCCCCCCCCCCCCCCCCceeeecccccceEeCccccCCCCC
Q 040143 91 QPHTNIKKLEITRYSGRK-FPI-WLGDPSFSNMVTLKLIGCANCTSLPAVGKLVSLKELTIRRMLVLRSIGSEICGKDCS 168 (232)
Q Consensus 91 ~~~~~L~~L~l~~~~~~~-~p~-~~~~~~l~~L~~L~l~~c~~~~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~ 168 (232)
..+++|++|++.++.... ++. .+. .+++|++|++++|. +..+|.+..+++|++|+++++. +..++...+
T Consensus 168 ~~l~~L~~L~l~~~~~l~~i~~~~~~--~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~----- 238 (452)
T 3zyi_A 168 NRVPSLMRLDLGELKKLEYISEGAFE--GLFNLKYLNLGMCN-IKDMPNLTPLVGLEELEMSGNH-FPEIRPGSF----- 238 (452)
T ss_dssp TTCTTCCEEECCCCTTCCEECTTTTT--TCTTCCEEECTTSC-CSSCCCCTTCTTCCEEECTTSC-CSEECGGGG-----
T ss_pred hcCCcccEEeCCCCCCccccChhhcc--CCCCCCEEECCCCc-ccccccccccccccEEECcCCc-CcccCcccc-----
Confidence 344566666665543322 222 122 35677777777764 4566777777788888877653 444432222
Q ss_pred ccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC----CCCCcceEEeCC
Q 040143 169 TPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD----HLPALETLALSD 232 (232)
Q Consensus 169 ~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~----~l~~L~~L~i~~ 232 (232)
..+++|+.|++.++. +.... +.....+++|+.|++++| ++. .+|. .+++|+.|++.+
T Consensus 239 ~~l~~L~~L~L~~n~-l~~~~----~~~~~~l~~L~~L~L~~N-~l~-~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 239 HGLSSLKKLWVMNSQ-VSLIE----RNAFDGLASLVELNLAHN-NLS-SLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp TTCTTCCEEECTTSC-CCEEC----TTTTTTCTTCCEEECCSS-CCS-CCCTTSSTTCTTCCEEECCS
T ss_pred cCccCCCEEEeCCCc-CceEC----HHHhcCCCCCCEEECCCC-cCC-ccChHHhccccCCCEEEccC
Confidence 237888888887753 33322 123456899999999999 888 6653 467888888763
No 7
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.42 E-value=2.5e-12 Score=108.84 Aligned_cols=151 Identities=19% Similarity=0.233 Sum_probs=92.3
Q ss_pred cCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCC-CCC-ccCCCCCCccceEEEeCCCCCCCC
Q 040143 58 LGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRK-FPI-WLGDPSFSNMVTLKLIGCANCTSL 135 (232)
Q Consensus 58 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p~-~~~~~~l~~L~~L~l~~c~~~~~l 135 (232)
+..+++|++|+++++.-.. . ....+..+++|++|++.++.... ++. .+. .+++|++|++++|. +..+
T Consensus 132 ~~~l~~L~~L~L~~N~i~~--~------~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~--~l~~L~~L~L~~n~-l~~~ 200 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNPIES--I------PSYAFNRIPSLRRLDLGELKRLSYISEGAFE--GLSNLRYLNLAMCN-LREI 200 (440)
T ss_dssp SCSCSSCCEEECCSCCCCE--E------CTTTTTTCTTCCEEECCCCTTCCEECTTTTT--TCSSCCEEECTTSC-CSSC
T ss_pred hhccccCceeeCCCCcccc--c------CHHHhhhCcccCEeCCCCCCCcceeCcchhh--cccccCeecCCCCc-Cccc
Confidence 4555666666665542110 0 01123345677777776543332 222 222 46778888887764 5677
Q ss_pred CCCCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCC
Q 040143 136 PAVGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLS 215 (232)
Q Consensus 136 ~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~ 215 (232)
|.+..+++|++|+++++ .+..++...+ ..+++|+.|++.++. +..+. +.....+++|+.|++++| ++.
T Consensus 201 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-----~~l~~L~~L~L~~n~-l~~~~----~~~~~~l~~L~~L~L~~N-~l~ 268 (440)
T 3zyj_A 201 PNLTPLIKLDELDLSGN-HLSAIRPGSF-----QGLMHLQKLWMIQSQ-IQVIE----RNAFDNLQSLVEINLAHN-NLT 268 (440)
T ss_dssp CCCTTCSSCCEEECTTS-CCCEECTTTT-----TTCTTCCEEECTTCC-CCEEC----TTSSTTCTTCCEEECTTS-CCC
T ss_pred cccCCCcccCEEECCCC-ccCccChhhh-----ccCccCCEEECCCCc-eeEEC----hhhhcCCCCCCEEECCCC-CCC
Confidence 77888888888888776 4555533222 237888888887753 33332 123456899999999999 888
Q ss_pred CCCCC----CCCCcceEEeCC
Q 040143 216 GKLPD----HLPALETLALSD 232 (232)
Q Consensus 216 ~~lp~----~l~~L~~L~i~~ 232 (232)
.+|. .+++|+.|++.+
T Consensus 269 -~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 269 -LLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp -CCCTTTTSSCTTCCEEECCS
T ss_pred -ccChhHhccccCCCEEEcCC
Confidence 6653 467888888753
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.42 E-value=2e-13 Score=120.77 Aligned_cols=163 Identities=16% Similarity=0.133 Sum_probs=100.6
Q ss_pred CCCCCCCCCCCCeEEecCCCC-----------------Chhhhh--cccCCCceEEEcccCCCCChhhhcccccCcccCC
Q 040143 4 ERSPLTRQTLSDFIVGRGIGS-----------------GLKDLR--NLTFLRGKLCISRLENANDSWDAREASLGDKKGL 64 (232)
Q Consensus 4 i~~L~~L~~L~~~~~~~~~~~-----------------~l~~L~--~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L 64 (232)
++++++|++|++...... +. .+..++ ++++|+ .|.+.+..... ..+..++++++|
T Consensus 202 l~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~-~L~L~~n~l~~----~~p~~l~~l~~L 275 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFV-AENICEAWENENSEYAQQYKTEDLKWDNLKDLT-DVEVYNCPNLT----KLPTFLKALPEM 275 (636)
T ss_dssp GGGCTTCCEEEEESCCCC-GGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCC-EEEEECCTTCS----SCCTTTTTCSSC
T ss_pred HhcccCCCEEECcCCccc-cccccccccccccchhcccCchhhhhcccCCCC-EEEecCCcCCc----cChHHHhcCCCC
Confidence 667777777754322211 10 344556 788888 88887543222 223457788899
Q ss_pred CceEEEecCCCCC-CchhhHHHHHhcCCCCCCCceEEEEeeCCCCCCC--ccCCCCCCccceEEEeCCCCCCCCCCCCCC
Q 040143 65 EELSLGWGSPFHS-RNEIAEEKVLDMLQPHTNIKKLEITRYSGRKFPI--WLGDPSFSNMVTLKLIGCANCTSLPAVGKL 141 (232)
Q Consensus 65 ~~L~l~~~~~~~~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~l~~c~~~~~l~~l~~L 141 (232)
++|+++++..... ..+... ..+..+..+++|++|++.++....+|. ++. .+++|++|++++|...+.+|.++.+
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~--~l~~L~~L~L~~N~l~g~ip~~~~l 352 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDW-QALADAPVGEKIQIIYIGYNNLKTFPVETSLQ--KMKKLGMLECLYNQLEGKLPAFGSE 352 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCSSCCCHHHHT--TCTTCCEEECCSCCCEEECCCCEEE
T ss_pred CEEECcCCCCCccccchHHH-HhhhccccCCCCCEEECCCCcCCccCchhhhc--cCCCCCEEeCcCCcCccchhhhCCC
Confidence 9998877631110 001111 111122334789999998887777887 666 5788999999888755577778888
Q ss_pred CCCceeeecccccceEeCccccCCCCCccCCc-cceEeccCC
Q 040143 142 VSLKELTIRRMLVLRSIGSEICGKDCSTPFQS-LETLCFSDL 182 (232)
Q Consensus 142 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~-L~~L~l~~~ 182 (232)
++|++|+++++ .+..++..+. .+++ |++|+++++
T Consensus 353 ~~L~~L~L~~N-~l~~lp~~l~------~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 353 IKLASLNLAYN-QITEIPANFC------GFTEQVENLSFAHN 387 (636)
T ss_dssp EEESEEECCSS-EEEECCTTSE------EECTTCCEEECCSS
T ss_pred CCCCEEECCCC-ccccccHhhh------hhcccCcEEEccCC
Confidence 88888888776 3445554332 2666 777766654
No 9
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.41 E-value=1e-11 Score=96.44 Aligned_cols=177 Identities=16% Similarity=0.102 Sum_probs=125.1
Q ss_pred hhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEe-cCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCC
Q 040143 28 DLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGW-GSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSG 106 (232)
Q Consensus 28 ~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 106 (232)
.++.+++|+ .+.+.+...+..+.. ..+.++++|++|++++ +.-.. . ....+..+++|++|++.++..
T Consensus 50 ~~~~l~~L~-~L~l~~n~~l~~i~~---~~f~~l~~L~~L~l~~~n~l~~-i-------~~~~f~~l~~L~~L~l~~n~l 117 (239)
T 2xwt_C 50 AFSNLPNIS-RIYVSIDVTLQQLES---HSFYNLSKVTHIEIRNTRNLTY-I-------DPDALKELPLLKFLGIFNTGL 117 (239)
T ss_dssp TTTTCTTCC-EEEEECCSSCCEECT---TTEESCTTCCEEEEEEETTCCE-E-------CTTSEECCTTCCEEEEEEECC
T ss_pred HccCCCCCc-EEeCCCCCCcceeCH---hHcCCCcCCcEEECCCCCCeeE-c-------CHHHhCCCCCCCEEeCCCCCC
Confidence 466777787 888865432332221 2366788999999987 53211 0 012234568999999999887
Q ss_pred CCCCCccCCCCCCccc---eEEEeCCCCCCCCCC--CCCCCCCc-eeeecccccceEeCccccCCCCCccCCccceEecc
Q 040143 107 RKFPIWLGDPSFSNMV---TLKLIGCANCTSLPA--VGKLVSLK-ELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFS 180 (232)
Q Consensus 107 ~~~p~~~~~~~l~~L~---~L~l~~c~~~~~l~~--l~~L~~L~-~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~ 180 (232)
..+|. +. .+++|+ +|++++|..++.+|. ++.+++|+ +|+++++ .++.++...+. .++|+.|++.
T Consensus 118 ~~lp~-~~--~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~------~~~L~~L~L~ 187 (239)
T 2xwt_C 118 KMFPD-LT--KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFN------GTKLDAVYLN 187 (239)
T ss_dssp CSCCC-CT--TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTT------TCEEEEEECT
T ss_pred ccccc-cc--cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcC------CCCCCEEEcC
Confidence 77887 33 356666 999999856677765 88999999 9999876 46677654333 4789999999
Q ss_pred CCcccccccccCcCCccCCC-CcccEEeEcCCCCCCCCCCC-CCCCcceEEeCC
Q 040143 181 DLPELEFWDTGNQTGYVEIF-PRLVELYIEWCPKLSGKLPD-HLPALETLALSD 232 (232)
Q Consensus 181 ~~~~l~~~~~~~~~~~~~~l-p~L~~L~l~~c~~l~~~lp~-~l~~L~~L~i~~ 232 (232)
++..+..+. . .....+ ++|+.|+++++ ++. .+|. .+++|+.|++.+
T Consensus 188 ~n~~l~~i~---~-~~~~~l~~~L~~L~l~~N-~l~-~l~~~~~~~L~~L~l~~ 235 (239)
T 2xwt_C 188 KNKYLTVID---K-DAFGGVYSGPSLLDVSQT-SVT-ALPSKGLEHLKELIARN 235 (239)
T ss_dssp TCTTCCEEC---T-TTTTTCSBCCSEEECTTC-CCC-CCCCTTCTTCSEEECTT
T ss_pred CCCCcccCC---H-HHhhccccCCcEEECCCC-ccc-cCChhHhccCceeeccC
Confidence 886566544 1 223457 99999999998 888 7775 689999998764
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.41 E-value=4.4e-13 Score=121.90 Aligned_cols=142 Identities=20% Similarity=0.224 Sum_probs=92.2
Q ss_pred hhhhh--cccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCC-CchhhHHHHHhcCCCCCCCceEEEE
Q 040143 26 LKDLR--NLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHS-RNEIAEEKVLDMLQPHTNIKKLEIT 102 (232)
Q Consensus 26 l~~L~--~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~l~~~~~L~~L~l~ 102 (232)
+..++ ++++|+ .|.+.+..... ..+..++++++|+.|+++++..... ..+.........+..+++|+.|+++
T Consensus 482 P~~l~f~~L~~L~-~L~Ls~N~l~~----~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls 556 (876)
T 4ecn_A 482 NEELSWSNLKDLT-DVELYNCPNMT----QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556 (876)
T ss_dssp TSCCCGGGCTTCC-EEEEESCTTCC----SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECC
T ss_pred ChhhhhccCCCCC-EEECcCCCCCc----cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEee
Confidence 34455 778888 88886543222 2234577888999999976631110 1111111121245556789999998
Q ss_pred eeCCCCCCC--ccCCCCCCccceEEEeCCCCCCCCCCCCCCCCCceeeecccccceEeCccccCCCCCccCCc-cceEec
Q 040143 103 RYSGRKFPI--WLGDPSFSNMVTLKLIGCANCTSLPAVGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQS-LETLCF 179 (232)
Q Consensus 103 ~~~~~~~p~--~~~~~~l~~L~~L~l~~c~~~~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~-L~~L~l 179 (232)
++....+|. ++. .+++|++|++++|.. ..+|.++.+++|++|+++++. +..++..+. .+++ |+.|++
T Consensus 557 ~N~L~~ip~~~~l~--~L~~L~~L~Ls~N~l-~~lp~~~~L~~L~~L~Ls~N~-l~~lp~~l~------~l~~~L~~L~L 626 (876)
T 4ecn_A 557 YNNLEEFPASASLQ--KMVKLGLLDCVHNKV-RHLEAFGTNVKLTDLKLDYNQ-IEEIPEDFC------AFTDQVEGLGF 626 (876)
T ss_dssp SSCCCBCCCHHHHT--TCTTCCEEECTTSCC-CBCCCCCTTSEESEEECCSSC-CSCCCTTSC------EECTTCCEEEC
T ss_pred CCcCCccCChhhhh--cCCCCCEEECCCCCc-ccchhhcCCCcceEEECcCCc-cccchHHHh------hccccCCEEEC
Confidence 887777887 665 578899999988764 478888888899999887764 445553332 3666 777777
Q ss_pred cCC
Q 040143 180 SDL 182 (232)
Q Consensus 180 ~~~ 182 (232)
+++
T Consensus 627 s~N 629 (876)
T 4ecn_A 627 SHN 629 (876)
T ss_dssp CSS
T ss_pred cCC
Confidence 665
No 11
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.38 E-value=1.2e-12 Score=105.82 Aligned_cols=168 Identities=19% Similarity=0.210 Sum_probs=100.1
Q ss_pred hhhhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeC
Q 040143 26 LKDLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYS 105 (232)
Q Consensus 26 l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 105 (232)
+..+..+++|+ .|.+.+. .+..... +..+++|++|+++++.-.. +..+..+++|++|+++++.
T Consensus 56 l~~~~~l~~L~-~L~L~~n-~i~~~~~-----~~~l~~L~~L~L~~n~l~~----------~~~~~~l~~L~~L~l~~n~ 118 (308)
T 1h6u_A 56 IEGVQYLNNLI-GLELKDN-QITDLAP-----LKNLTKITELELSGNPLKN----------VSAIAGLQSIKTLDLTSTQ 118 (308)
T ss_dssp CTTGGGCTTCC-EEECCSS-CCCCCGG-----GTTCCSCCEEECCSCCCSC----------CGGGTTCTTCCEEECTTSC
T ss_pred chhhhccCCCC-EEEccCC-cCCCChh-----HccCCCCCEEEccCCcCCC----------chhhcCCCCCCEEECCCCC
Confidence 44566677777 7776543 2222211 5667778888777664221 1234556778888777766
Q ss_pred CCCCCCccCCCCCCccceEEEeCCCCCCCCCCCCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCccc
Q 040143 106 GRKFPIWLGDPSFSNMVTLKLIGCANCTSLPAVGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPEL 185 (232)
Q Consensus 106 ~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l 185 (232)
...++. +. .+++|++|++++|. +..++.++.+++|++|+++++ .+..++. + ..+++|+.|+++++. +
T Consensus 119 l~~~~~-l~--~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n-~l~~~~~-l------~~l~~L~~L~l~~n~-l 185 (308)
T 1h6u_A 119 ITDVTP-LA--GLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNA-QVSDLTP-L------ANLSKLTTLKADDNK-I 185 (308)
T ss_dssp CCCCGG-GT--TCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSS-CCCCCGG-G------TTCTTCCEEECCSSC-C
T ss_pred CCCchh-hc--CCCCCCEEECCCCc-cCcCccccCCCCccEEEccCC-cCCCChh-h------cCCCCCCEEECCCCc-c
Confidence 555554 22 46777788777764 455555777777888877765 3444332 2 237777777776653 3
Q ss_pred ccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC--CCCCcceEEeC
Q 040143 186 EFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD--HLPALETLALS 231 (232)
Q Consensus 186 ~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~--~l~~L~~L~i~ 231 (232)
..+. ....+++|+.|++++| ++. .++. .+++|+.|++.
T Consensus 186 ~~~~------~l~~l~~L~~L~L~~N-~l~-~~~~l~~l~~L~~L~l~ 225 (308)
T 1h6u_A 186 SDIS------PLASLPNLIEVHLKNN-QIS-DVSPLANTSNLFIVTLT 225 (308)
T ss_dssp CCCG------GGGGCTTCCEEECTTS-CCC-BCGGGTTCTTCCEEEEE
T ss_pred CcCh------hhcCCCCCCEEEccCC-ccC-ccccccCCCCCCEEEcc
Confidence 3222 1345777777777777 665 4432 46667766654
No 12
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.37 E-value=1.2e-11 Score=98.56 Aligned_cols=177 Identities=21% Similarity=0.221 Sum_probs=119.6
Q ss_pred hhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCC
Q 040143 28 DLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGR 107 (232)
Q Consensus 28 ~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 107 (232)
.+..+++|+ .|.+.+. .+. ......++++++|++|+++++...... ....+..+++|++|++.++...
T Consensus 51 ~~~~~~~L~-~L~l~~n-~l~---~~~~~~~~~l~~L~~L~l~~n~~l~~~-------~~~~~~~l~~L~~L~l~~n~l~ 118 (285)
T 1ozn_A 51 SFRACRNLT-ILWLHSN-VLA---RIDAAAFTGLALLEQLDLSDNAQLRSV-------DPATFHGLGRLHTLHLDRCGLQ 118 (285)
T ss_dssp TTTTCTTCC-EEECCSS-CCC---EECTTTTTTCTTCCEEECCSCTTCCCC-------CTTTTTTCTTCCEEECTTSCCC
T ss_pred HcccCCCCC-EEECCCC-ccc---eeCHhhcCCccCCCEEeCCCCCCcccc-------CHHHhcCCcCCCEEECCCCcCC
Confidence 456677777 7777543 222 122234677889999999876411100 1223455689999999887666
Q ss_pred CC-CCccCCCCCCccceEEEeCCCCCCCCCC--CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcc
Q 040143 108 KF-PIWLGDPSFSNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPE 184 (232)
Q Consensus 108 ~~-p~~~~~~~l~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 184 (232)
.+ |.++. .+++|++|++++|. +..++. ++.+++|++|+++++ .+..++...+ ..+++|++|+++++.
T Consensus 119 ~~~~~~~~--~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~-----~~l~~L~~L~l~~n~- 188 (285)
T 1ozn_A 119 ELGPGLFR--GLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGN-RISSVPERAF-----RGLHSLDRLLLHQNR- 188 (285)
T ss_dssp CCCTTTTT--TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTT-----TTCTTCCEEECCSSC-
T ss_pred EECHhHhh--CCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCC-cccccCHHHh-----cCccccCEEECCCCc-
Confidence 55 44444 47899999999876 445554 888999999999876 5666664422 238899999998864
Q ss_pred cccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC----CCCCcceEEeCC
Q 040143 185 LEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD----HLPALETLALSD 232 (232)
Q Consensus 185 l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~----~l~~L~~L~i~~ 232 (232)
+..+. +.....+++|+.|++++| ++. .+|. .+++|+.|++.+
T Consensus 189 l~~~~----~~~~~~l~~L~~L~l~~n-~l~-~~~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 189 VAHVH----PHAFRDLGRLMTLYLFAN-NLS-ALPTEALAPLRALQYLRLND 234 (285)
T ss_dssp CCEEC----TTTTTTCTTCCEEECCSS-CCS-CCCHHHHTTCTTCCEEECCS
T ss_pred ccccC----HhHccCcccccEeeCCCC-cCC-cCCHHHcccCcccCEEeccC
Confidence 33332 124456899999999999 787 5552 578899888764
No 13
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.37 E-value=2.9e-12 Score=96.83 Aligned_cols=146 Identities=19% Similarity=0.246 Sum_probs=93.1
Q ss_pred CcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCC-CCC
Q 040143 59 GDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTS-LPA 137 (232)
Q Consensus 59 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~-l~~ 137 (232)
+++++|++|+++++.-.. +.++..+++|++|++.++....++ .+. .+++|++|++++|..... .+.
T Consensus 41 ~~l~~L~~L~l~~n~i~~----------l~~l~~l~~L~~L~l~~n~~~~~~-~l~--~l~~L~~L~l~~n~l~~~~~~~ 107 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD----------LTGIEYAHNIKDLTINNIHATNYN-PIS--GLSNLERLRIMGKDVTSDKIPN 107 (197)
T ss_dssp HHHHTCCEEEEESSCCSC----------CTTGGGCTTCSEEEEESCCCSCCG-GGT--TCTTCCEEEEECTTCBGGGSCC
T ss_pred hhcCCccEEeccCCCccC----------hHHHhcCCCCCEEEccCCCCCcch-hhh--cCCCCCEEEeECCccCcccChh
Confidence 455778888887663211 112344578888888877444333 343 477888888888764432 334
Q ss_pred CCCCCCCceeeecccccceE-eCccccCCCCCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCC
Q 040143 138 VGKLVSLKELTIRRMLVLRS-IGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSG 216 (232)
Q Consensus 138 l~~L~~L~~L~l~~~~~l~~-~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~ 216 (232)
++.+++|++|+++++. +.. .+..+ ..+++|++|+++++..+..+. ....+|+|+.|++++| ++.
T Consensus 108 l~~l~~L~~L~Ls~n~-i~~~~~~~l------~~l~~L~~L~L~~n~~i~~~~------~l~~l~~L~~L~l~~n-~i~- 172 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSA-HDDSILTKI------NTLPKVNSIDLSYNGAITDIM------PLKTLPELKSLNIQFD-GVH- 172 (197)
T ss_dssp CTTCTTCCEEECCSSB-CBGGGHHHH------TTCSSCCEEECCSCTBCCCCG------GGGGCSSCCEEECTTB-CCC-
T ss_pred hcCCCCCCEEEecCCc-cCcHhHHHH------hhCCCCCEEEccCCCCccccH------hhcCCCCCCEEECCCC-CCc-
Confidence 8888888888887764 332 22222 237888888888775444332 3455888888888888 666
Q ss_pred CCCC--CCCCcceEEeCC
Q 040143 217 KLPD--HLPALETLALSD 232 (232)
Q Consensus 217 ~lp~--~l~~L~~L~i~~ 232 (232)
.++. .+++|++|++.+
T Consensus 173 ~~~~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 173 DYRGIEDFPKLNQLYAFS 190 (197)
T ss_dssp CCTTGGGCSSCCEEEECB
T ss_pred ChHHhccCCCCCEEEeeC
Confidence 5543 577888887753
No 14
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.36 E-value=4.6e-12 Score=108.12 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=19.4
Q ss_pred CCCCcccEEeEcCCCCCCCCCCC----CCCCcceEEeC
Q 040143 198 EIFPRLVELYIEWCPKLSGKLPD----HLPALETLALS 231 (232)
Q Consensus 198 ~~lp~L~~L~l~~c~~l~~~lp~----~l~~L~~L~i~ 231 (232)
..+++|+.|++++| ++. .++. .+++|+.|++.
T Consensus 245 ~~l~~L~~L~Ls~n-~l~-~~~~~~~~~l~~L~~L~L~ 280 (477)
T 2id5_A 245 RHLVYLRFLNLSYN-PIS-TIEGSMLHELLRLQEIQLV 280 (477)
T ss_dssp TTCTTCCEEECCSS-CCC-EECTTSCTTCTTCCEEECC
T ss_pred cCccccCeeECCCC-cCC-ccChhhccccccCCEEECC
Confidence 34677777777777 455 3321 35667777664
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.36 E-value=1.7e-11 Score=103.86 Aligned_cols=124 Identities=20% Similarity=0.224 Sum_probs=80.7
Q ss_pred CCCceEEEEeeCCCC-CCCccCCCCCCccceEEEeCCCCCCCCCC-CCCCCCCceeeecccccceEeCccccCCCCCccC
Q 040143 94 TNIKKLEITRYSGRK-FPIWLGDPSFSNMVTLKLIGCANCTSLPA-VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPF 171 (232)
Q Consensus 94 ~~L~~L~l~~~~~~~-~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 171 (232)
++|+.|+++++.... .|.++. .+++|++|++++|...+..|. ++.+++|++|+++++ .+..++...+ ..+
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-----~~l 346 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFS--HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMF-----ENL 346 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGG-----TTC
T ss_pred cCceEEEecCccccccchhhcc--cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC-ccCCcChhHh-----cCc
Confidence 356666665554433 244444 467888888887764333343 778888888888776 4555543322 238
Q ss_pred CccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC----CCCCcceEEeCC
Q 040143 172 QSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD----HLPALETLALSD 232 (232)
Q Consensus 172 p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~----~l~~L~~L~i~~ 232 (232)
++|++|+++++. +..+. +...+.+++|+.|++++| +++ .+|. .+++|+.|++.+
T Consensus 347 ~~L~~L~Ls~N~-l~~~~----~~~~~~l~~L~~L~L~~N-~l~-~~~~~~~~~l~~L~~L~l~~ 404 (455)
T 3v47_A 347 DKLEVLDLSYNH-IRALG----DQSFLGLPNLKELALDTN-QLK-SVPDGIFDRLTSLQKIWLHT 404 (455)
T ss_dssp TTCCEEECCSSC-CCEEC----TTTTTTCTTCCEEECCSS-CCS-CCCTTTTTTCTTCCEEECCS
T ss_pred ccCCEEECCCCc-ccccC----hhhccccccccEEECCCC-ccc-cCCHhHhccCCcccEEEccC
Confidence 889999998763 33332 224456899999999998 787 5553 467888888764
No 16
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.36 E-value=1.3e-11 Score=97.96 Aligned_cols=127 Identities=23% Similarity=0.266 Sum_probs=56.8
Q ss_pred CCCCCCCceEEEEeeCCCCCCCc-cCCCCCCccceEEEeCCCCCCCCCC--CCCCCCCceeeecccccceEeCccccCCC
Q 040143 90 LQPHTNIKKLEITRYSGRKFPIW-LGDPSFSNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRMLVLRSIGSEICGKD 166 (232)
Q Consensus 90 l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~ 166 (232)
+..+++|++|+++++....++.. +. .+++|++|++++|. +..++. ++.+++|++|+++++ .+..++...+
T Consensus 81 l~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~--- 153 (272)
T 3rfs_A 81 LKELTNLTYLILTGNQLQSLPNGVFD--KLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVF--- 153 (272)
T ss_dssp GTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT---
T ss_pred hcCCCCCCEEECCCCccCccChhHhc--CCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccCccCHHHh---
Confidence 33445555665555444443322 22 34555666655554 233333 455556666665554 3333332211
Q ss_pred CCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC---CCCCcceEEeC
Q 040143 167 CSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD---HLPALETLALS 231 (232)
Q Consensus 167 ~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~---~l~~L~~L~i~ 231 (232)
..+++|++|+++++. +.... +...+.+++|+.|++++| ++.+..|. .+++|+.|++.
T Consensus 154 --~~l~~L~~L~l~~n~-l~~~~----~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~ 213 (272)
T 3rfs_A 154 --DKLTNLTELDLSYNQ-LQSLP----EGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLH 213 (272)
T ss_dssp --TTCTTCCEEECCSSC-CCCCC----TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECC
T ss_pred --ccCccCCEEECCCCC-cCccC----HHHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEcc
Confidence 125555555555542 22221 111234555555555555 44422221 24455555543
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.36 E-value=5.3e-12 Score=106.99 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=20.0
Q ss_pred CCCCcccEEeEcCCCCCCCCCCC---CCCCcceEEeC
Q 040143 198 EIFPRLVELYIEWCPKLSGKLPD---HLPALETLALS 231 (232)
Q Consensus 198 ~~lp~L~~L~l~~c~~l~~~lp~---~l~~L~~L~i~ 231 (232)
+.+++|+.|++++| ++.+..|. .+++|+.|++.
T Consensus 344 ~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~ 379 (455)
T 3v47_A 344 ENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALD 379 (455)
T ss_dssp TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred cCcccCCEEECCCC-cccccChhhccccccccEEECC
Confidence 45677777777777 55523343 35667777664
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.35 E-value=5.5e-12 Score=103.21 Aligned_cols=123 Identities=17% Similarity=0.240 Sum_probs=81.0
Q ss_pred CCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCCCCCCCCCceeeecccccceEeCccccCCCCCccC
Q 040143 92 PHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPAVGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPF 171 (232)
Q Consensus 92 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 171 (232)
.+++|++|+++++.....+. +. .+++|++|++++|. +..++.+..+++|++|++++| .+..++ ....+
T Consensus 219 ~~~~L~~L~l~~n~l~~~~~-~~--~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n-~l~~~~-------~~~~l 286 (347)
T 4fmz_A 219 NMTRLNSLKIGNNKITDLSP-LA--NLSQLTWLEIGTNQ-ISDINAVKDLTKLKMLNVGSN-QISDIS-------VLNNL 286 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GT--TCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCCCG-------GGGGC
T ss_pred cCCcCCEEEccCCccCCCcc-hh--cCCCCCEEECCCCc-cCCChhHhcCCCcCEEEccCC-ccCCCh-------hhcCC
Confidence 34677777777766655554 22 46788888887774 455666778888888888776 344432 12347
Q ss_pred CccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCC-CCCCCcceEEeCC
Q 040143 172 QSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLP-DHLPALETLALSD 232 (232)
Q Consensus 172 p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp-~~l~~L~~L~i~~ 232 (232)
++|+.|+++++. +.... . ...+.+|+|+.|++++| ++.+..| ..+++|++|++.+
T Consensus 287 ~~L~~L~L~~n~-l~~~~---~-~~l~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 287 SQLNSLFLNNNQ-LGNED---M-EVIGGLTNLTTLFLSQN-HITDIRPLASLSKMDSADFAN 342 (347)
T ss_dssp TTCSEEECCSSC-CCGGG---H-HHHHTCTTCSEEECCSS-SCCCCGGGGGCTTCSEESSSC
T ss_pred CCCCEEECcCCc-CCCcC---h-hHhhccccCCEEEccCC-ccccccChhhhhccceeehhh
Confidence 888888888874 22211 1 12346899999999999 5773333 3578888887764
No 19
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.34 E-value=6.9e-12 Score=100.51 Aligned_cols=168 Identities=19% Similarity=0.173 Sum_probs=117.8
Q ss_pred cCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCCCCc
Q 040143 33 TFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKFPIW 112 (232)
Q Consensus 33 ~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~ 112 (232)
..++ .|.+.+.. +. ......+.++++|++|+++++.-.. +.....+++|++|+++++....+|..
T Consensus 31 ~~l~-~L~L~~N~-l~---~~~~~~~~~l~~L~~L~L~~n~l~~----------~~~~~~l~~L~~L~Ls~N~l~~l~~~ 95 (290)
T 1p9a_G 31 KDTT-ILHLSENL-LY---TFSLATLMPYTRLTQLNLDRAELTK----------LQVDGTLPVLGTLDLSHNQLQSLPLL 95 (290)
T ss_dssp TTCC-EEECTTSC-CS---EEEGGGGTTCTTCCEEECTTSCCCE----------EECCSCCTTCCEEECCSSCCSSCCCC
T ss_pred CCCC-EEEcCCCc-CC---ccCHHHhhcCCCCCEEECCCCccCc----------ccCCCCCCcCCEEECCCCcCCcCchh
Confidence 3566 67765432 22 2222457788999999997764211 11224568999999998877778876
Q ss_pred cCCCCCCccceEEEeCCCCCCCCCC--CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcccccccc
Q 040143 113 LGDPSFSNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWDT 190 (232)
Q Consensus 113 ~~~~~l~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~ 190 (232)
+. .+++|++|+++++. +..+|. ++.+++|++|+++++ .+..++...+. .+++|+.|+++++ .+..+.
T Consensus 96 ~~--~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~-----~l~~L~~L~L~~N-~l~~l~- 164 (290)
T 1p9a_G 96 GQ--TLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLT-----PTPKLEKLSLANN-NLTELP- 164 (290)
T ss_dssp TT--TCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTT-----TCTTCCEEECTTS-CCSCCC-
T ss_pred hc--cCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCC-CCCccChhhcc-----cccCCCEEECCCC-cCCccC-
Confidence 65 58899999999885 456654 899999999999876 46666544333 3889999999876 344433
Q ss_pred cCcCCccCCCCcccEEeEcCCCCCCCCCCCC---CCCcceEEeC
Q 040143 191 GNQTGYVEIFPRLVELYIEWCPKLSGKLPDH---LPALETLALS 231 (232)
Q Consensus 191 ~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~~---l~~L~~L~i~ 231 (232)
. .....+++|+.|+++++ ++. .+|.. .++|+.+.+.
T Consensus 165 --~-~~~~~l~~L~~L~L~~N-~l~-~ip~~~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 165 --A-GLLNGLENLDTLLLQEN-SLY-TIPKGFFGSHLLPFAFLH 203 (290)
T ss_dssp --T-TTTTTCTTCCEEECCSS-CCC-CCCTTTTTTCCCSEEECC
T ss_pred --H-HHhcCcCCCCEEECCCC-cCC-ccChhhcccccCCeEEeC
Confidence 1 12345899999999999 888 88863 4668888765
No 20
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.34 E-value=4.8e-12 Score=103.55 Aligned_cols=176 Identities=22% Similarity=0.240 Sum_probs=100.8
Q ss_pred ChhhhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEee
Q 040143 25 GLKDLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRY 104 (232)
Q Consensus 25 ~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 104 (232)
.+..++.+++|+ .+++.+. .+.... .+.++++|++|+++++.-.. ++.+..+++|++|+++++
T Consensus 58 ~~~~~~~~~~L~-~L~l~~n-~i~~~~-----~~~~l~~L~~L~L~~n~i~~----------~~~~~~l~~L~~L~l~~n 120 (347)
T 4fmz_A 58 SIQGIEYLTNLE-YLNLNGN-QITDIS-----PLSNLVKLTNLYIGTNKITD----------ISALQNLTNLRELYLNED 120 (347)
T ss_dssp CCTTGGGCTTCC-EEECCSS-CCCCCG-----GGTTCTTCCEEECCSSCCCC----------CGGGTTCTTCSEEECTTS
T ss_pred cchhhhhcCCcc-EEEccCC-ccccch-----hhhcCCcCCEEEccCCcccC----------chHHcCCCcCCEEECcCC
Confidence 344566777777 7777653 222221 15667778888887663221 123455677888888766
Q ss_pred CCCCCCCccCCCCCCccceEEEeCCCCCCCCCCCCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcc
Q 040143 105 SGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPAVGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPE 184 (232)
Q Consensus 105 ~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 184 (232)
....++. +. .+++|++|++++|.....++.++.+++|++|+++++. +..++. + ..+++|+.|++.++.
T Consensus 121 ~i~~~~~-~~--~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-~------~~l~~L~~L~l~~n~- 188 (347)
T 4fmz_A 121 NISDISP-LA--NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP-I------ANLTDLYSLSLNYNQ- 188 (347)
T ss_dssp CCCCCGG-GT--TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG-G------GGCTTCSEEECTTSC-
T ss_pred cccCchh-hc--cCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh-h------ccCCCCCEEEccCCc-
Confidence 6555554 22 4677777777777666666667777777777776653 222221 1 224555555554432
Q ss_pred ccccc-------------ccC-c--CCccCCCCcccEEeEcCCCCCCCCCCC--CCCCcceEEeC
Q 040143 185 LEFWD-------------TGN-Q--TGYVEIFPRLVELYIEWCPKLSGKLPD--HLPALETLALS 231 (232)
Q Consensus 185 l~~~~-------------~~~-~--~~~~~~lp~L~~L~l~~c~~l~~~lp~--~l~~L~~L~i~ 231 (232)
+..+. .+. + ......+++|+.|++++| ++. .+|. .+++|++|++.
T Consensus 189 l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n-~l~-~~~~~~~l~~L~~L~l~ 251 (347)
T 4fmz_A 189 IEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNN-KIT-DLSPLANLSQLTWLEIG 251 (347)
T ss_dssp CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCC-CCGGGTTCTTCCEEECC
T ss_pred ccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCC-ccC-CCcchhcCCCCCEEECC
Confidence 11110 000 0 001345788888888888 666 5542 57788888775
No 21
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.33 E-value=4.7e-12 Score=100.41 Aligned_cols=166 Identities=19% Similarity=0.210 Sum_probs=110.6
Q ss_pred EEecCCCCChhhhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCC
Q 040143 17 IVGRGIGSGLKDLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNI 96 (232)
Q Consensus 17 ~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L 96 (232)
.........+..++.+++|+ .|.+.+.. +... ..+.++++|++|+++++.-... ....+..+++|
T Consensus 47 ~l~~~~i~~~~~l~~l~~L~-~L~l~~n~-l~~~-----~~l~~l~~L~~L~L~~n~l~~~--------~~~~~~~l~~L 111 (272)
T 3rfs_A 47 IANNSDIKSVQGIQYLPNVR-YLALGGNK-LHDI-----SALKELTNLTYLILTGNQLQSL--------PNGVFDKLTNL 111 (272)
T ss_dssp ECTTSCCCCCTTGGGCTTCC-EEECTTSC-CCCC-----GGGTTCTTCCEEECTTSCCCCC--------CTTTTTTCTTC
T ss_pred eeCCCCcccccccccCCCCc-EEECCCCC-CCCc-----hhhcCCCCCCEEECCCCccCcc--------ChhHhcCCcCC
Confidence 33333334456678888888 88886532 3222 2467888999999977643210 11124556899
Q ss_pred ceEEEEeeCCCCCCCc-cCCCCCCccceEEEeCCCCCCCCCC--CCCCCCCceeeecccccceEeCccccCCCCCccCCc
Q 040143 97 KKLEITRYSGRKFPIW-LGDPSFSNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQS 173 (232)
Q Consensus 97 ~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~ 173 (232)
++|++.++....+|.. +. .+++|++|++++|. +..++. ++.+++|++|+++++ .+..++...+ ..+++
T Consensus 112 ~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~-----~~l~~ 182 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFD--KLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVF-----DKLTQ 182 (272)
T ss_dssp CEEECTTSCCCCCCTTTTT--TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT-----TTCTT
T ss_pred CEEECCCCcCCccCHHHhc--cCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCC-CcCccCHHHh-----cCCcc
Confidence 9999988776665543 33 47899999999885 456665 788999999999887 4555544322 23889
Q ss_pred cceEeccCCcccccccccCcCCccCCCCcccEEeEcCC
Q 040143 174 LETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWC 211 (232)
Q Consensus 174 L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c 211 (232)
|++|++.++. +..+. +...+.+++|+.|++.+|
T Consensus 183 L~~L~L~~N~-l~~~~----~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 183 LKDLRLYQNQ-LKSVP----DGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CCEEECCSSC-CSCCC----TTTTTTCTTCCEEECCSS
T ss_pred CCEEECCCCc-CCccC----HHHHhCCcCCCEEEccCC
Confidence 9999998763 44333 122356899999999876
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.33 E-value=1.7e-12 Score=105.17 Aligned_cols=200 Identities=19% Similarity=0.144 Sum_probs=110.9
Q ss_pred CCCCCCCCCCCCeEEecCCCCChhhhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhH
Q 040143 4 ERSPLTRQTLSDFIVGRGIGSGLKDLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAE 83 (232)
Q Consensus 4 i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 83 (232)
++++++|++|++.............++++++|+ .|.+.+..- ....+..+.++++|++|+++++.-..
T Consensus 72 l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~-~L~Ls~n~l----~~~~p~~~~~l~~L~~L~Ls~N~l~~------- 139 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH-YLYITHTNV----SGAIPDFLSQIKTLVTLDFSYNALSG------- 139 (313)
T ss_dssp GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCS-EEEEEEECC----EEECCGGGGGCTTCCEEECCSSEEES-------
T ss_pred HhCCCCCCeeeCCCCCcccccCChhHhcCCCCC-EEECcCCee----CCcCCHHHhCCCCCCEEeCCCCccCC-------
Confidence 445555665543211111122334566666666 666654221 11222345667777777776552110
Q ss_pred HHHHhcCCCCCCCceEEEEeeCCC-CCCCccCCCCCC-ccceEEEeCCCCCCCCCC-CCCCCCCceeeecccccceEeCc
Q 040143 84 EKVLDMLQPHTNIKKLEITRYSGR-KFPIWLGDPSFS-NMVTLKLIGCANCTSLPA-VGKLVSLKELTIRRMLVLRSIGS 160 (232)
Q Consensus 84 ~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~-~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~~~~l~~~~~ 160 (232)
.....+..+++|++|+++++... .+|..+. .++ +|++|++++|.....+|. ++.++ |++|+++++. +.....
T Consensus 140 -~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~--~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~-l~~~~~ 214 (313)
T 1ogq_A 140 -TLPPSISSLPNLVGITFDGNRISGAIPDSYG--SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM-LEGDAS 214 (313)
T ss_dssp -CCCGGGGGCTTCCEEECCSSCCEEECCGGGG--CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE-EEECCG
T ss_pred -cCChHHhcCCCCCeEECcCCcccCcCCHHHh--hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc-ccCcCC
Confidence 01122344567777777766544 3565554 344 777777777654444554 55665 7777776653 333222
Q ss_pred cccCCCCCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC---CCCCcceEEeCC
Q 040143 161 EICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD---HLPALETLALSD 232 (232)
Q Consensus 161 ~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~---~l~~L~~L~i~~ 232 (232)
..+ ..+++|++|+++++. +.... +....+++|++|++++| ++.|.+|. .+++|+.|++++
T Consensus 215 ~~~-----~~l~~L~~L~L~~N~-l~~~~-----~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 215 VLF-----GSDKNTQKIHLAKNS-LAFDL-----GKVGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp GGC-----CTTSCCSEEECCSSE-ECCBG-----GGCCCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCS
T ss_pred HHH-----hcCCCCCEEECCCCc-eeeec-----CcccccCCCCEEECcCC-cccCcCChHHhcCcCCCEEECcC
Confidence 221 237778888877653 22111 12455789999999988 67667775 467888888753
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.33 E-value=3.8e-12 Score=111.70 Aligned_cols=102 Identities=20% Similarity=0.123 Sum_probs=51.8
Q ss_pred CCccceEEEeCCCCCCCCCC-CCCCCCCceeeecccccce-EeCccccCCCCCccCCccceEeccCCcccccccccCcCC
Q 040143 118 FSNMVTLKLIGCANCTSLPA-VGKLVSLKELTIRRMLVLR-SIGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTG 195 (232)
Q Consensus 118 l~~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~ 195 (232)
+++|++|++++|......|. ++.+++|++|+++++.-.. .++.. ...+++|++|+++++. +.... +.
T Consensus 423 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------~~~l~~L~~L~Ls~n~-l~~~~----~~ 491 (606)
T 3vq2_A 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV------FANTTNLTFLDLSKCQ-LEQIS----WG 491 (606)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC------CTTCTTCCEEECTTSC-CCEEC----TT
T ss_pred cccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHh------hccCCCCCEEECCCCc-CCccC----hh
Confidence 44555555554443333333 4555555555555443211 12211 1236667777776653 22222 12
Q ss_pred ccCCCCcccEEeEcCCCCCCCCCCC---CCCCcceEEeC
Q 040143 196 YVEIFPRLVELYIEWCPKLSGKLPD---HLPALETLALS 231 (232)
Q Consensus 196 ~~~~lp~L~~L~l~~c~~l~~~lp~---~l~~L~~L~i~ 231 (232)
..+.+++|+.|++++| ++.+..|. .+++|+.|+++
T Consensus 492 ~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~ 529 (606)
T 3vq2_A 492 VFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCS 529 (606)
T ss_dssp TTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECT
T ss_pred hhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECC
Confidence 3345778888888877 66633343 45677777765
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.32 E-value=3.4e-12 Score=112.08 Aligned_cols=54 Identities=26% Similarity=0.326 Sum_probs=30.0
Q ss_pred CCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCC-CCCCCcceEEeCC
Q 040143 171 FQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLP-DHLPALETLALSD 232 (232)
Q Consensus 171 ~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp-~~l~~L~~L~i~~ 232 (232)
+|+|+.|+++++. +..+. ...+.+++|+.|++++| ++. .+| ..+++|+.|++++
T Consensus 300 l~~L~~L~Ls~N~-l~~i~-----~~~~~l~~L~~L~L~~N-~l~-~~~~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 300 IPTLKVLDLSHNH-LLHVE-----RNQPQFDRLENLYLDHN-SIV-TLKLSTHHTLKNLTLSH 354 (597)
T ss_dssp CTTCCEEECCSSC-CCCCG-----GGHHHHTTCSEEECCSS-CCC-CCCCCTTCCCSEEECCS
T ss_pred CCCCcEEECCCCC-CCccC-----cccccCCCCCEEECCCC-CCC-CcChhhcCCCCEEEeeC
Confidence 5566666665542 22211 23344677777777776 555 333 3567777777653
No 25
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.32 E-value=6e-12 Score=106.86 Aligned_cols=177 Identities=17% Similarity=0.152 Sum_probs=95.9
Q ss_pred hhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCC
Q 040143 28 DLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGR 107 (232)
Q Consensus 28 ~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 107 (232)
.+.++++|+ .|.+.+. .+. ......+.++++|++|+++++.-... ....+..+++|++|+++++...
T Consensus 94 ~~~~l~~L~-~L~Ls~n-~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~--------~~~~~~~l~~L~~L~L~~N~l~ 160 (452)
T 3zyi_A 94 TFRHLHHLE-VLQLGRN-SIR---QIEVGAFNGLASLNTLELFDNWLTVI--------PSGAFEYLSKLRELWLRNNPIE 160 (452)
T ss_dssp TTTTCTTCC-EEECCSS-CCC---EECTTTTTTCTTCCEEECCSSCCSBC--------CTTTSSSCTTCCEEECCSCCCC
T ss_pred HcCCCCCCC-EEECCCC-ccC---CcChhhccCcccCCEEECCCCcCCcc--------ChhhhcccCCCCEEECCCCCcc
Confidence 345555555 5555432 111 11112355566666666655432100 0111334566677766665544
Q ss_pred CCCCccCCCCCCccceEEEeCCCCCCCCCC--CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCccc
Q 040143 108 KFPIWLGDPSFSNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPEL 185 (232)
Q Consensus 108 ~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l 185 (232)
.+|..... .+++|++|++++|..++.++. +..+++|++|+++++ .+..++ ....+++|++|+++++. +
T Consensus 161 ~~~~~~~~-~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~-------~~~~l~~L~~L~Ls~N~-l 230 (452)
T 3zyi_A 161 SIPSYAFN-RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP-------NLTPLVGLEELEMSGNH-F 230 (452)
T ss_dssp EECTTTTT-TCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCC-------CCTTCTTCCEEECTTSC-C
T ss_pred eeCHhHHh-cCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccc-------cccccccccEEECcCCc-C
Confidence 44432111 356677777766666665554 666677777777655 233332 12346777888777653 3
Q ss_pred ccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC---CCCCcceEEeCC
Q 040143 186 EFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD---HLPALETLALSD 232 (232)
Q Consensus 186 ~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~---~l~~L~~L~i~~ 232 (232)
.... +.....+++|+.|++.+| ++.+..|. .+++|+.|++++
T Consensus 231 ~~~~----~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~ 275 (452)
T 3zyi_A 231 PEIR----PGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAH 275 (452)
T ss_dssp SEEC----GGGGTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred cccC----cccccCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCC
Confidence 3222 123456889999999888 66633333 467888888753
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.32 E-value=9.5e-12 Score=106.16 Aligned_cols=133 Identities=18% Similarity=0.178 Sum_probs=71.5
Q ss_pred CCCCCCceEEEEeeCCCCCCC-ccCCCCCCccceEEEeCCCCCCCCCC--CCCCCCCceeeecccccceEeCccccCC--
Q 040143 91 QPHTNIKKLEITRYSGRKFPI-WLGDPSFSNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRMLVLRSIGSEICGK-- 165 (232)
Q Consensus 91 ~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~-- 165 (232)
..+++|+.|++.++....+|. ++. .+++|++|+++++.. ..++. +..+++|++|+++++..+..++...+..
T Consensus 149 ~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 149 SGLNSLEQLTLEKCNLTSIPTEALS--HLHGLIVLRLRHLNI-NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp TTCTTCCEEEEESCCCSSCCHHHHT--TCTTCCEEEEESCCC-CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred cCCCCCCEEECCCCcCcccChhHhc--ccCCCcEEeCCCCcC-cEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence 334556666665554444332 122 245555555555432 22222 5556666666665554444443221110
Q ss_pred ----------------CCCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC---CCCCcc
Q 040143 166 ----------------DCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD---HLPALE 226 (232)
Q Consensus 166 ----------------~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~---~l~~L~ 226 (232)
.....+++|+.|+++++. +..+. ......+++|+.|++.+| ++.+..|. .+++|+
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~----~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 299 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIE----GSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLR 299 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEEC----TTSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCC
T ss_pred ccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccC----hhhccccccCCEEECCCC-ccceECHHHhcCcccCC
Confidence 011236778888877653 33322 123456899999999998 77734443 468888
Q ss_pred eEEeCC
Q 040143 227 TLALSD 232 (232)
Q Consensus 227 ~L~i~~ 232 (232)
.|++++
T Consensus 300 ~L~L~~ 305 (477)
T 2id5_A 300 VLNVSG 305 (477)
T ss_dssp EEECCS
T ss_pred EEECCC
Confidence 888763
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.31 E-value=2.4e-12 Score=103.65 Aligned_cols=129 Identities=19% Similarity=0.184 Sum_probs=76.8
Q ss_pred CCCCCCCceEEEEeeCCCCC-CCccCCCCCCccceEEEeCCCCCC-CCCC-CCCCCCCceeeecccccceEeCccccCCC
Q 040143 90 LQPHTNIKKLEITRYSGRKF-PIWLGDPSFSNMVTLKLIGCANCT-SLPA-VGKLVSLKELTIRRMLVLRSIGSEICGKD 166 (232)
Q Consensus 90 l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~-~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~ 166 (232)
+..+++|++|+++++..... |..+. .+++|++|++++|...+ .+|. ++.+++|++|+++++ .+..++...+
T Consensus 122 ~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~--- 195 (306)
T 2z66_A 122 FLSLRNLIYLDISHTHTRVAFNGIFN--GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAF--- 195 (306)
T ss_dssp TTTCTTCCEEECTTSCCEECSTTTTT--TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTT---
T ss_pred hhhccCCCEEECCCCcCCccchhhcc--cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHh---
Confidence 44456777777765543322 33333 35677777777765433 2444 777777888887765 3444432221
Q ss_pred CCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC---CC-CCcceEEeCC
Q 040143 167 CSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD---HL-PALETLALSD 232 (232)
Q Consensus 167 ~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~---~l-~~L~~L~i~~ 232 (232)
..+++|++|+++++. +.... . .....+++|+.|++++| ++.+..|. .+ ++|+.|++++
T Consensus 196 --~~l~~L~~L~L~~N~-l~~~~---~-~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 196 --NSLSSLQVLNMSHNN-FFSLD---T-FPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ 257 (306)
T ss_dssp --TTCTTCCEEECTTSC-CSBCC---S-GGGTTCTTCCEEECTTS-CCCBCSSSSCCCCCTTCCEEECTT
T ss_pred --cCCCCCCEEECCCCc-cCccC---h-hhccCcccCCEeECCCC-CCcccCHHHHHhhhccCCEEEccC
Confidence 237888888887753 33222 1 12345889999999988 66644443 34 4788888753
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.31 E-value=2.6e-11 Score=103.27 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=18.8
Q ss_pred CCCCcccEEeEcCCCCCCCCCC-CCCCCcceEEeC
Q 040143 198 EIFPRLVELYIEWCPKLSGKLP-DHLPALETLALS 231 (232)
Q Consensus 198 ~~lp~L~~L~l~~c~~l~~~lp-~~l~~L~~L~i~ 231 (232)
..+++|+.|++++| ++.+..| ..+++|+.|++.
T Consensus 350 ~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 350 ANLTNINWLSAGHN-QISDLTPLANLTRITQLGLN 383 (466)
T ss_dssp TTCTTCCEEECCSS-CCCBCGGGTTCTTCCEEECC
T ss_pred ccCCCCCEEeCCCC-ccCccchhhcCCCCCEEecc
Confidence 34666666666666 4553333 245666666654
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.30 E-value=5.2e-12 Score=105.11 Aligned_cols=100 Identities=22% Similarity=0.227 Sum_probs=51.6
Q ss_pred CCccceEEEeCCCCCCCCCC-CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcccccccccCcCCc
Q 040143 118 FSNMVTLKLIGCANCTSLPA-VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTGY 196 (232)
Q Consensus 118 l~~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~ 196 (232)
+++|++|++++|......|. ++.+++|++|+++++ .+..++..+ ..+|+|++|+++++. +..+. ..
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~------~~l~~L~~L~L~~n~-l~~~~-----~~ 313 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYG------QPIPTLKVLDLSHNH-LLHVE-----RN 313 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSS------SCCTTCCEEECCSSC-CCCCG-----GG
T ss_pred CCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCccc------CCCCCCCEEECCCCc-ceecC-----cc
Confidence 44555555554432221122 455555555555443 233333211 236667777766652 33222 23
Q ss_pred cCCCCcccEEeEcCCCCCCCCCC-CCCCCcceEEeCC
Q 040143 197 VEIFPRLVELYIEWCPKLSGKLP-DHLPALETLALSD 232 (232)
Q Consensus 197 ~~~lp~L~~L~l~~c~~l~~~lp-~~l~~L~~L~i~~ 232 (232)
.+.+++|+.|++++| ++. .+| ..+++|+.|++.+
T Consensus 314 ~~~l~~L~~L~L~~N-~i~-~~~~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 314 QPQFDRLENLYLDHN-SIV-TLKLSTHHTLKNLTLSH 348 (390)
T ss_dssp HHHHTTCSEEECCSS-CCC-CCCCCTTCCCSEEECCS
T ss_pred ccccCcCCEEECCCC-ccc-eeCchhhccCCEEEcCC
Confidence 345677777777777 565 444 3567777777653
No 30
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.30 E-value=9.9e-12 Score=109.04 Aligned_cols=37 Identities=22% Similarity=0.022 Sum_probs=15.9
Q ss_pred CCCCCCCCCCCCeEEecCCCCChhhhhcccCCCceEEEcc
Q 040143 4 ERSPLTRQTLSDFIVGRGIGSGLKDLRNLTFLRGKLCISR 43 (232)
Q Consensus 4 i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~ 43 (232)
++++++|++|++...... .....+..+++|+ .|.+.+
T Consensus 274 ~~~l~~L~~L~l~~n~l~--~lp~~l~~l~~L~-~L~l~~ 310 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLS--ELPSGLVGLSTLK-KLVLSA 310 (606)
T ss_dssp TTTCTTCSEEECTTSCCS--CCCSSCCSCTTCC-EEECTT
T ss_pred hccccCCCEEeccCCccC--CCChhhcccccCC-EEECcc
Confidence 455555555533221111 1122345555555 555543
No 31
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.30 E-value=7.5e-11 Score=93.31 Aligned_cols=151 Identities=21% Similarity=0.252 Sum_probs=92.3
Q ss_pred ccCcccCCCceEEEecCCCCCCchhhHHHHH-hcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCC
Q 040143 57 SLGDKKGLEELSLGWGSPFHSRNEIAEEKVL-DMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSL 135 (232)
Q Consensus 57 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l 135 (232)
.+.++++|++|+++++.-.. +. ..+..+++|++|+++++....+|.... ..+++|++|+++++. +..+
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~---------i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~ 124 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQT---------LPAGIFKELKNLETLWVTDNKLQALPIGVF-DQLVNLAELRLDRNQ-LKSL 124 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSC---------CCTTTTSSCTTCCEEECCSSCCCCCCTTTT-TTCSSCCEEECCSSC-CCCC
T ss_pred HhcCCCCCCEEECCCCccCe---------eChhhhcCCCCCCEEECCCCcCCcCCHhHc-ccccCCCEEECCCCc-cCee
Confidence 46677788888887653211 11 113445788888887766655554321 146788888887765 3444
Q ss_pred CC--CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCC
Q 040143 136 PA--VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPK 213 (232)
Q Consensus 136 ~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~ 213 (232)
+. ++.+++|++|+++++ .+..++...+ ..+++|++|+++++. +..+. . .....+++|+.|++++| +
T Consensus 125 ~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-----~~l~~L~~L~L~~n~-l~~~~---~-~~~~~l~~L~~L~L~~N-~ 192 (270)
T 2o6q_A 125 PPRVFDSLTKLTYLSLGYN-ELQSLPKGVF-----DKLTSLKELRLYNNQ-LKRVP---E-GAFDKLTELKTLKLDNN-Q 192 (270)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCCCCCTTTT-----TTCTTCCEEECCSSC-CSCCC---T-TTTTTCTTCCEEECCSS-C
T ss_pred CHHHhCcCcCCCEEECCCC-cCCccCHhHc-----cCCcccceeEecCCc-CcEeC---h-hHhccCCCcCEEECCCC-c
Confidence 43 678888888888765 3555543322 237788888887652 33222 1 12345788888888887 6
Q ss_pred CCCCCCC----CCCCcceEEeC
Q 040143 214 LSGKLPD----HLPALETLALS 231 (232)
Q Consensus 214 l~~~lp~----~l~~L~~L~i~ 231 (232)
+. .+|. .+++|+.|++.
T Consensus 193 l~-~~~~~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 193 LK-RVPEGAFDSLEKLKMLQLQ 213 (270)
T ss_dssp CS-CCCTTTTTTCTTCCEEECC
T ss_pred CC-cCCHHHhccccCCCEEEec
Confidence 66 5543 35677777765
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.29 E-value=3.4e-11 Score=102.59 Aligned_cols=187 Identities=20% Similarity=0.211 Sum_probs=98.8
Q ss_pred CCCCCCCCCCCCeEEecCCCCChhhhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhH
Q 040143 4 ERSPLTRQTLSDFIVGRGIGSGLKDLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAE 83 (232)
Q Consensus 4 i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 83 (232)
++++++|++|+. ....-..+..+.++++|+ .+.+.+.. +.... .++.+++|+.|+++++....
T Consensus 173 ~~~l~~L~~L~l---~~n~l~~~~~l~~l~~L~-~L~l~~n~-l~~~~-----~~~~l~~L~~L~l~~n~l~~------- 235 (466)
T 1o6v_A 173 LANLTTLERLDI---SSNKVSDISVLAKLTNLE-SLIATNNQ-ISDIT-----PLGILTNLDELSLNGNQLKD------- 235 (466)
T ss_dssp GTTCTTCCEEEC---CSSCCCCCGGGGGCTTCS-EEECCSSC-CCCCG-----GGGGCTTCCEEECCSSCCCC-------
T ss_pred hccCCCCCEEEC---cCCcCCCChhhccCCCCC-EEEecCCc-ccccc-----cccccCCCCEEECCCCCccc-------
Confidence 344555555533 232223345577777787 77776532 22111 14556777777776653221
Q ss_pred HHHHhcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCCCCCCCCCceeeecccccceEeCcccc
Q 040143 84 EKVLDMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPAVGKLVSLKELTIRRMLVLRSIGSEIC 163 (232)
Q Consensus 84 ~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~ 163 (232)
...+..+++|+.|+++++.....+. +. .+++|++|++++|. +..++.++.+++|++|+++++. +..++.
T Consensus 236 ---~~~l~~l~~L~~L~l~~n~l~~~~~-~~--~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~-l~~~~~--- 304 (466)
T 1o6v_A 236 ---IGTLASLTNLTDLDLANNQISNLAP-LS--GLTKLTELKLGANQ-ISNISPLAGLTALTNLELNENQ-LEDISP--- 304 (466)
T ss_dssp ---CGGGGGCTTCSEEECCSSCCCCCGG-GT--TCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSC-CSCCGG---
T ss_pred ---chhhhcCCCCCEEECCCCccccchh-hh--cCCCCCEEECCCCc-cCccccccCCCccCeEEcCCCc-ccCchh---
Confidence 0223345677777776665554443 22 35667777776664 3444446666777777776553 333221
Q ss_pred CCCCCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC--CCCCcceEEeC
Q 040143 164 GKDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD--HLPALETLALS 231 (232)
Q Consensus 164 ~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~--~l~~L~~L~i~ 231 (232)
...+++|+.|+++++. +.+.. ....+++|+.|++++| ++. .++. .+++|+.|++.
T Consensus 305 ----~~~l~~L~~L~L~~n~-l~~~~------~~~~l~~L~~L~l~~n-~l~-~~~~l~~l~~L~~L~l~ 361 (466)
T 1o6v_A 305 ----ISNLKNLTYLTLYFNN-ISDIS------PVSSLTKLQRLFFYNN-KVS-DVSSLANLTNINWLSAG 361 (466)
T ss_dssp ----GGGCTTCSEEECCSSC-CSCCG------GGGGCTTCCEEECCSS-CCC-CCGGGTTCTTCCEEECC
T ss_pred ----hcCCCCCCEEECcCCc-CCCch------hhccCccCCEeECCCC-ccC-CchhhccCCCCCEEeCC
Confidence 1236666666666552 22222 1234666666666666 555 3332 35566666554
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.28 E-value=5.2e-12 Score=110.91 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=18.2
Q ss_pred CCCCcccEEeEcCCCCCCCCCCC---CCCCcceEEeC
Q 040143 198 EIFPRLVELYIEWCPKLSGKLPD---HLPALETLALS 231 (232)
Q Consensus 198 ~~lp~L~~L~l~~c~~l~~~lp~---~l~~L~~L~i~ 231 (232)
+.+|+|+.|++++| ++. .+|. .+++|+.|+++
T Consensus 298 ~~l~~L~~L~Ls~N-~l~-~i~~~~~~l~~L~~L~L~ 332 (597)
T 3oja_B 298 QPIPTLKVLDLSHN-HLL-HVERNQPQFDRLENLYLD 332 (597)
T ss_dssp SCCTTCCEEECCSS-CCC-CCGGGHHHHTTCSEEECC
T ss_pred ccCCCCcEEECCCC-CCC-ccCcccccCCCCCEEECC
Confidence 34666666666666 555 5553 24566666554
No 34
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.28 E-value=2.6e-11 Score=102.60 Aligned_cols=176 Identities=18% Similarity=0.177 Sum_probs=94.7
Q ss_pred hhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCC
Q 040143 28 DLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGR 107 (232)
Q Consensus 28 ~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 107 (232)
.+.++++|+ .|++.+. .+.. .....+.++++|++|+++++.-..- ....+..+++|++|+++++...
T Consensus 83 ~~~~l~~L~-~L~Ls~n-~i~~---i~~~~~~~l~~L~~L~L~~n~l~~~--------~~~~~~~l~~L~~L~L~~N~i~ 149 (440)
T 3zyj_A 83 SFKHLRHLE-ILQLSRN-HIRT---IEIGAFNGLANLNTLELFDNRLTTI--------PNGAFVYLSKLKELWLRNNPIE 149 (440)
T ss_dssp TTSSCSSCC-EEECCSS-CCCE---ECGGGGTTCSSCCEEECCSSCCSSC--------CTTTSCSCSSCCEEECCSCCCC
T ss_pred HhhCCCCCC-EEECCCC-cCCc---cChhhccCCccCCEEECCCCcCCee--------CHhHhhccccCceeeCCCCccc
Confidence 345555555 5555432 1111 1112345566666666655422100 0112344566666666665544
Q ss_pred CCCCc-cCCCCCCccceEEEeCCCCCCCCCC--CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcc
Q 040143 108 KFPIW-LGDPSFSNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPE 184 (232)
Q Consensus 108 ~~p~~-~~~~~l~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 184 (232)
.+|.. +. .+++|++|++++|..+..++. +..+++|++|+++++ .+..++ ....+++|++|+++++ .
T Consensus 150 ~~~~~~~~--~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~-------~~~~l~~L~~L~Ls~N-~ 218 (440)
T 3zyj_A 150 SIPSYAFN--RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP-------NLTPLIKLDELDLSGN-H 218 (440)
T ss_dssp EECTTTTT--TCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCC-------CCTTCSSCCEEECTTS-C
T ss_pred ccCHHHhh--hCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcccc-------ccCCCcccCEEECCCC-c
Confidence 44432 22 356677777766655555554 666677777777655 344333 1233677777777765 3
Q ss_pred cccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC---CCCCcceEEeCC
Q 040143 185 LEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD---HLPALETLALSD 232 (232)
Q Consensus 185 l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~---~l~~L~~L~i~~ 232 (232)
+.... +.....+++|+.|++.+| ++.+..|. .+++|+.|++++
T Consensus 219 l~~~~----~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~ 264 (440)
T 3zyj_A 219 LSAIR----PGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAH 264 (440)
T ss_dssp CCEEC----TTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTT
T ss_pred cCccC----hhhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCC
Confidence 33332 123455788888888888 66623232 467788887753
No 35
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.27 E-value=6.3e-11 Score=94.38 Aligned_cols=173 Identities=16% Similarity=0.140 Sum_probs=116.8
Q ss_pred cCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeC-CCCC-C
Q 040143 33 TFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYS-GRKF-P 110 (232)
Q Consensus 33 ~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~-p 110 (232)
++++ .+.+.+. .+.. .....++++++|++|+++++.-.. .....+..+++|++|+++++. ...+ |
T Consensus 32 ~~l~-~L~l~~n-~i~~---~~~~~~~~~~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 32 AASQ-RIFLHGN-RISH---VPAASFRACRNLTILWLHSNVLAR--------IDAAAFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp TTCS-EEECTTS-CCCE---ECTTTTTTCTTCCEEECCSSCCCE--------ECTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred CCce-EEEeeCC-cCCc---cCHHHcccCCCCCEEECCCCccce--------eCHhhcCCccCCCEEeCCCCCCccccCH
Confidence 4576 7777543 2222 122346788999999998763211 012345567899999998875 4444 4
Q ss_pred CccCCCCCCccceEEEeCCCCCCCCCC-CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCccccccc
Q 040143 111 IWLGDPSFSNMVTLKLIGCANCTSLPA-VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWD 189 (232)
Q Consensus 111 ~~~~~~~l~~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~ 189 (232)
..+. .+++|++|++++|......|. ++.+++|++|+++++ .+..++...+ ..+++|++|+++++ .+..+.
T Consensus 99 ~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~-----~~l~~L~~L~l~~n-~l~~~~ 169 (285)
T 1ozn_A 99 ATFH--GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTF-----RDLGNLTHLFLHGN-RISSVP 169 (285)
T ss_dssp TTTT--TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT-----TTCTTCCEEECCSS-CCCEEC
T ss_pred HHhc--CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHh-----ccCCCccEEECCCC-cccccC
Confidence 5554 578999999999864433343 889999999999886 4555543322 33899999999886 344433
Q ss_pred ccCcCCccCCCCcccEEeEcCCCCCCCCCCC---CCCCcceEEeCC
Q 040143 190 TGNQTGYVEIFPRLVELYIEWCPKLSGKLPD---HLPALETLALSD 232 (232)
Q Consensus 190 ~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~---~l~~L~~L~i~~ 232 (232)
. .....+++|+.|++++| ++.+..|. .+++|+.|++++
T Consensus 170 ---~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 170 ---E-RAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFA 210 (285)
T ss_dssp ---T-TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred ---H-HHhcCccccCEEECCCC-cccccCHhHccCcccccEeeCCC
Confidence 1 12456899999999999 67734454 467889888763
No 36
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.27 E-value=3.3e-11 Score=97.31 Aligned_cols=167 Identities=17% Similarity=0.177 Sum_probs=120.4
Q ss_pred hhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCC
Q 040143 28 DLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGR 107 (232)
Q Consensus 28 ~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 107 (232)
...++.+|+ .+.+.+. .+.... .+..+++|++|+++++.-.. +. .+..+++|++|+++++...
T Consensus 36 ~~~~l~~L~-~L~l~~~-~i~~l~-----~~~~l~~L~~L~L~~n~i~~---------~~-~~~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 36 TQADLDGIT-TLSAFGT-GVTTIE-----GVQYLNNLIGLELKDNQITD---------LA-PLKNLTKITELELSGNPLK 98 (308)
T ss_dssp CHHHHHTCC-EEECTTS-CCCCCT-----TGGGCTTCCEEECCSSCCCC---------CG-GGTTCCSCCEEECCSCCCS
T ss_pred cHHHcCCcC-EEEeeCC-CccCch-----hhhccCCCCEEEccCCcCCC---------Ch-hHccCCCCCEEEccCCcCC
Confidence 345566777 7887654 233221 36678999999998874321 11 1556789999999988766
Q ss_pred CCCCccCCCCCCccceEEEeCCCCCCCCCCCCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCccccc
Q 040143 108 KFPIWLGDPSFSNMVTLKLIGCANCTSLPAVGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEF 187 (232)
Q Consensus 108 ~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~ 187 (232)
.++. +. .+++|++|++++|. +..++.++.+++|++|+++++ .+..++. ...+++|++|+++++ .+..
T Consensus 99 ~~~~-~~--~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n-~l~~~~~-------l~~l~~L~~L~l~~n-~l~~ 165 (308)
T 1h6u_A 99 NVSA-IA--GLQSIKTLDLTSTQ-ITDVTPLAGLSNLQVLYLDLN-QITNISP-------LAGLTNLQYLSIGNA-QVSD 165 (308)
T ss_dssp CCGG-GT--TCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECCSS-CCCCCGG-------GGGCTTCCEEECCSS-CCCC
T ss_pred Cchh-hc--CCCCCCEEECCCCC-CCCchhhcCCCCCCEEECCCC-ccCcCcc-------ccCCCCccEEEccCC-cCCC
Confidence 6653 33 48899999999986 566777999999999999887 3544432 234899999999887 3443
Q ss_pred ccccCcCCccCCCCcccEEeEcCCCCCCCCCCC--CCCCcceEEeCC
Q 040143 188 WDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD--HLPALETLALSD 232 (232)
Q Consensus 188 ~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~--~l~~L~~L~i~~ 232 (232)
+. ....+++|+.|++++| ++. .++. .+++|+.|++++
T Consensus 166 ~~------~l~~l~~L~~L~l~~n-~l~-~~~~l~~l~~L~~L~L~~ 204 (308)
T 1h6u_A 166 LT------PLANLSKLTTLKADDN-KIS-DISPLASLPNLIEVHLKN 204 (308)
T ss_dssp CG------GGTTCTTCCEEECCSS-CCC-CCGGGGGCTTCCEEECTT
T ss_pred Ch------hhcCCCCCCEEECCCC-ccC-cChhhcCCCCCCEEEccC
Confidence 33 2456999999999999 777 5553 578899998763
No 37
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.26 E-value=1.3e-11 Score=99.30 Aligned_cols=177 Identities=18% Similarity=0.138 Sum_probs=113.2
Q ss_pred hhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCC
Q 040143 29 LRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRK 108 (232)
Q Consensus 29 L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 108 (232)
++++++|+ .|.+.+. .+.... .....+..+++|++|+++++.-. .+...+..+++|++|+++++....
T Consensus 48 ~~~l~~L~-~L~L~~n-~l~~~~-~~~~~~~~~~~L~~L~Ls~n~i~---------~l~~~~~~l~~L~~L~l~~n~l~~ 115 (306)
T 2z66_A 48 FDKLTQLT-KLSLSSN-GLSFKG-CCSQSDFGTTSLKYLDLSFNGVI---------TMSSNFLGLEQLEHLDFQHSNLKQ 115 (306)
T ss_dssp TTTCTTCS-EEECCSS-CCCEEE-EEEHHHHSCSCCCEEECCSCSEE---------EEEEEEETCTTCCEEECTTSEEES
T ss_pred hhccccCC-EEECCCC-ccCccc-CcccccccccccCEEECCCCccc---------cChhhcCCCCCCCEEECCCCcccc
Confidence 56777777 7777542 222110 01122345678888888766311 122334556889999987765555
Q ss_pred CCC--ccCCCCCCccceEEEeCCCCCCCCCC-CCCCCCCceeeecccccce-EeCccccCCCCCccCCccceEeccCCcc
Q 040143 109 FPI--WLGDPSFSNMVTLKLIGCANCTSLPA-VGKLVSLKELTIRRMLVLR-SIGSEICGKDCSTPFQSLETLCFSDLPE 184 (232)
Q Consensus 109 ~p~--~~~~~~l~~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 184 (232)
++. .+. .+++|++|++++|......+. ++.+++|++|+++++.-.+ ..+..+ ..+++|++|+++++.
T Consensus 116 ~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------~~l~~L~~L~Ls~n~- 186 (306)
T 2z66_A 116 MSEFSVFL--SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF------TELRNLTFLDLSQCQ- 186 (306)
T ss_dssp STTTTTTT--TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC------TTCTTCCEEECTTSC-
T ss_pred cccchhhh--hccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH------hhCcCCCEEECCCCC-
Confidence 543 333 578999999988865444444 8889999999998874322 233322 348999999998863
Q ss_pred cccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC----CCCCcceEEeCC
Q 040143 185 LEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD----HLPALETLALSD 232 (232)
Q Consensus 185 l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~----~l~~L~~L~i~~ 232 (232)
+.... +.....+++|+.|++++| ++. .++. .+++|+.|++++
T Consensus 187 l~~~~----~~~~~~l~~L~~L~L~~N-~l~-~~~~~~~~~l~~L~~L~L~~ 232 (306)
T 2z66_A 187 LEQLS----PTAFNSLSSLQVLNMSHN-NFF-SLDTFPYKCLNSLQVLDYSL 232 (306)
T ss_dssp CCEEC----TTTTTTCTTCCEEECTTS-CCS-BCCSGGGTTCTTCCEEECTT
T ss_pred cCCcC----HHHhcCCCCCCEEECCCC-ccC-ccChhhccCcccCCEeECCC
Confidence 33332 123456899999999999 777 4442 478899988763
No 38
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.26 E-value=2.4e-11 Score=97.33 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=25.5
Q ss_pred CCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCCCCCCCCCceeeeccc
Q 040143 92 PHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPAVGKLVSLKELTIRRM 152 (232)
Q Consensus 92 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~l~~L~~L~~L~l~~~ 152 (232)
.+++|++|+++++....+|. +. .+++|++|++++|. +..++.++.+++|++|+++++
T Consensus 88 ~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~L~~n~-i~~~~~l~~l~~L~~L~l~~n 144 (291)
T 1h6t_A 88 NLKNLGWLFLDENKVKDLSS-LK--DLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNN 144 (291)
T ss_dssp TCTTCCEEECCSSCCCCGGG-GT--TCTTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSS
T ss_pred cCCCCCEEECCCCcCCCChh-hc--cCCCCCEEECCCCc-CCCChhhcCCCCCCEEEccCC
Confidence 34455555554443333332 21 24455555555443 333444445555555555443
No 39
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.26 E-value=3.9e-12 Score=104.56 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=26.0
Q ss_pred CCCCcccEEeEcCCCCCCCCCCC----CCCCcceEEeCC
Q 040143 198 EIFPRLVELYIEWCPKLSGKLPD----HLPALETLALSD 232 (232)
Q Consensus 198 ~~lp~L~~L~l~~c~~l~~~lp~----~l~~L~~L~i~~ 232 (232)
..+++|+.|++++| ++. .+|. .+++|++|++.+
T Consensus 274 ~~l~~L~~L~Ls~N-~l~-~i~~~~~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 274 NQISGLLELEFSRN-QLK-SVPDGIFDRLTSLQKIWLHT 310 (353)
T ss_dssp HTCTTCCEEECCSS-CCC-CCCTTTTTTCTTCCEEECCS
T ss_pred hcccCCCEEECCCC-CCC-ccCHHHHhcCCCCCEEEeeC
Confidence 35789999999999 888 7774 467888888764
No 40
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.25 E-value=2.3e-11 Score=106.72 Aligned_cols=130 Identities=16% Similarity=0.140 Sum_probs=69.2
Q ss_pred CCCCCCceEEEEeeCCCCC-CCccCCCCCCccceEEEeCCCCCCCCC-C-CCCCCCCceeeecccccceEeCccccCCCC
Q 040143 91 QPHTNIKKLEITRYSGRKF-PIWLGDPSFSNMVTLKLIGCANCTSLP-A-VGKLVSLKELTIRRMLVLRSIGSEICGKDC 167 (232)
Q Consensus 91 ~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~l~-~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~ 167 (232)
..+++|++|+++++..... |..+. .+++|++|++++|......+ . ++.+++|++|+++++. +...+.. .
T Consensus 373 ~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-----~ 444 (606)
T 3t6q_A 373 RNLSHLQSLNLSYNEPLSLKTEAFK--ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQ-----L 444 (606)
T ss_dssp TTCTTCCEEECCSCSCEEECTTTTT--TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC-CBTTCTT-----T
T ss_pred ccCCCCCEEECCCCcCCcCCHHHhc--CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc-cCCcCHH-----H
Confidence 3445566666655433322 23332 35566666666554332222 2 5566666666666553 2221111 1
Q ss_pred CccCCccceEeccCCccccc-ccccCcCCccCCCCcccEEeEcCCCCCCCCCCC---CCCCcceEEeCC
Q 040143 168 STPFQSLETLCFSDLPELEF-WDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD---HLPALETLALSD 232 (232)
Q Consensus 168 ~~~~p~L~~L~l~~~~~l~~-~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~---~l~~L~~L~i~~ 232 (232)
...+|+|++|+++++.--.. +. .......+++|+.|++++| ++.+..|. .+++|+.|++++
T Consensus 445 ~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~ 509 (606)
T 3t6q_A 445 FDGLPALQHLNLQGNHFPKGNIQ---KTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSH 509 (606)
T ss_dssp TTTCTTCCEEECTTCBCGGGEEC---SSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred HhCCCCCCEEECCCCCCCccccc---cchhhccCCCccEEECCCC-ccCccChhhhccccCCCEEECCC
Confidence 22377778887776642111 11 1123456888999999888 66634443 467788887753
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.25 E-value=1.6e-11 Score=107.73 Aligned_cols=128 Identities=19% Similarity=0.253 Sum_probs=82.4
Q ss_pred CCCCCCCceEEEEeeCCCC-CCCccCCCCCCccceEEEeCCCCCCC-CCC-CCCCCCCceeeecccccceEeCccccCCC
Q 040143 90 LQPHTNIKKLEITRYSGRK-FPIWLGDPSFSNMVTLKLIGCANCTS-LPA-VGKLVSLKELTIRRMLVLRSIGSEICGKD 166 (232)
Q Consensus 90 l~~~~~L~~L~l~~~~~~~-~p~~~~~~~l~~L~~L~l~~c~~~~~-l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~ 166 (232)
+..+++|++|+++++.... .|.++. .+++|++|++++|...+. +|. ++.+++|++|++++|. +..++...+
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~--- 493 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFDGIFL--GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGVF--- 493 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTT--TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTT---
T ss_pred hhccccCCEEECcCCCCCccchhhhc--CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc-CCccChhhh---
Confidence 4445677777776654433 344444 477888888888765442 454 7888888888888774 444433222
Q ss_pred CCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC---CCC-CcceEEeCC
Q 040143 167 CSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD---HLP-ALETLALSD 232 (232)
Q Consensus 167 ~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~---~l~-~L~~L~i~~ 232 (232)
..+++|++|+++++. +.... +...+.+++|+.|++++| +++ .+|. .++ +|+.|++.+
T Consensus 494 --~~l~~L~~L~Ls~N~-l~~~~----~~~~~~l~~L~~L~l~~N-~l~-~~p~~~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 494 --DTLHRLQLLNMSHNN-LLFLD----SSHYNQLYSLSTLDCSFN-RIE-TSKGILQHFPKSLAFFNLTN 554 (606)
T ss_dssp --TTCTTCCEEECCSSC-CSCEE----GGGTTTCTTCCEEECTTS-CCC-CEESCGGGSCTTCCEEECCS
T ss_pred --cccccCCEEECCCCc-CCCcC----HHHccCCCcCCEEECCCC-cCc-ccCHhHhhhcccCcEEEccC
Confidence 237888888888763 33322 123456888888888888 677 7775 344 478877653
No 42
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.24 E-value=3.6e-11 Score=109.47 Aligned_cols=156 Identities=12% Similarity=0.129 Sum_probs=78.2
Q ss_pred cCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCC-CceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCC
Q 040143 58 LGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTN-IKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLP 136 (232)
Q Consensus 58 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~ 136 (232)
++++++|+.|+++++.-. .+...+..+++ |+.|+++++....+|.++.....++|++|++++|.....+|
T Consensus 591 ~~~L~~L~~L~Ls~N~l~---------~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIE---------EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp CCTTSEESEEECCSSCCS---------CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred hcCCCcceEEECcCCccc---------cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccc
Confidence 445555555555544211 12223344455 67777666655555655443222335555555554333222
Q ss_pred ----------------------------C--CCCCCCCceeeecccccceEeCccccCC--CCCccCCccceEeccCCcc
Q 040143 137 ----------------------------A--VGKLVSLKELTIRRMLVLRSIGSEICGK--DCSTPFQSLETLCFSDLPE 184 (232)
Q Consensus 137 ----------------------------~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~~p~L~~L~l~~~~~ 184 (232)
. +..+++|++|+++++ .+..++..++.. +....+++|+.|+++++ .
T Consensus 662 ~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~ 739 (876)
T 4ecn_A 662 NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-K 739 (876)
T ss_dssp SCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-C
T ss_pred cchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-C
Confidence 2 123444555554443 233333222210 00112337777777765 3
Q ss_pred cccccccCcCCccC--CCCcccEEeEcCCCCCCCCCCC---CCCCcceEEeC
Q 040143 185 LEFWDTGNQTGYVE--IFPRLVELYIEWCPKLSGKLPD---HLPALETLALS 231 (232)
Q Consensus 185 l~~~~~~~~~~~~~--~lp~L~~L~l~~c~~l~~~lp~---~l~~L~~L~i~ 231 (232)
+..+. .... .+|+|+.|++++| ++. .+|. .+++|+.|+++
T Consensus 740 L~~lp-----~~l~~~~l~~L~~L~Ls~N-~L~-~lp~~l~~L~~L~~L~Ls 784 (876)
T 4ecn_A 740 LTSLS-----DDFRATTLPYLSNMDVSYN-CFS-SFPTQPLNSSQLKAFGIR 784 (876)
T ss_dssp CCCCC-----GGGSTTTCTTCCEEECCSS-CCS-SCCCGGGGCTTCCEEECC
T ss_pred Cccch-----HHhhhccCCCcCEEEeCCC-CCC-ccchhhhcCCCCCEEECC
Confidence 33222 2333 6888888888888 777 4664 46778887764
No 43
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.24 E-value=9.2e-12 Score=108.28 Aligned_cols=128 Identities=16% Similarity=0.142 Sum_probs=81.9
Q ss_pred CCCCCCceEEEEeeCCCCCCC--ccCCCCCCccceEEEeCCCCCCCCCC-CCCCCCCceeeecccccc-eEeCccccCCC
Q 040143 91 QPHTNIKKLEITRYSGRKFPI--WLGDPSFSNMVTLKLIGCANCTSLPA-VGKLVSLKELTIRRMLVL-RSIGSEICGKD 166 (232)
Q Consensus 91 ~~~~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~~~~l-~~~~~~~~~~~ 166 (232)
..+++|++|++.++.....+. .+. .+++|++|++++|......|. ++.+++|++|++++|.-. ..++..+
T Consensus 393 ~~l~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~---- 466 (570)
T 2z63_A 393 LGLEQLEHLDFQHSNLKQMSEFSVFL--SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF---- 466 (570)
T ss_dssp ETCTTCCEEECTTSEEESCTTSCTTT--TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC----
T ss_pred cccCCCCEEEccCCccccccchhhhh--cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhh----
Confidence 345677777776544333222 222 467888888888765544554 778888888888877533 2444333
Q ss_pred CCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC---CCCCcceEEeCC
Q 040143 167 CSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD---HLPALETLALSD 232 (232)
Q Consensus 167 ~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~---~l~~L~~L~i~~ 232 (232)
..+++|++|+++++. +.... +...+.+++|+.|++++| ++.+..|. .+++|+.|++.+
T Consensus 467 --~~l~~L~~L~l~~n~-l~~~~----~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 467 --TELRNLTFLDLSQCQ-LEQLS----PTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHT 527 (570)
T ss_dssp --TTCTTCCEEECTTSC-CCEEC----TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred --hcccCCCEEECCCCc-cccCC----hhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecC
Confidence 338889999998774 33332 123456899999999998 77733333 467888888763
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.23 E-value=3.2e-11 Score=98.14 Aligned_cols=189 Identities=15% Similarity=0.080 Sum_probs=99.4
Q ss_pred CCCCCCCCCCCCCeEEecCCCCChhhhhcccCCCceEEEcccCCCCChhhh------------------cccccCcccCC
Q 040143 3 MERSPLTRQTLSDFIVGRGIGSGLKDLRNLTFLRGKLCISRLENANDSWDA------------------REASLGDKKGL 64 (232)
Q Consensus 3 ~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~------------------~~~~l~~l~~L 64 (232)
.++++++|++|++...... ......++++++|+ .|.+.+.. +..+... ....+.++++|
T Consensus 71 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~-~L~Ls~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 147 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKIS-KISPGAFAPLVKLE-RLYLSKNQ-LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM 147 (330)
T ss_dssp TTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCC-EEECCSSC-CSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTC
T ss_pred hhccCCCCCEEECCCCcCC-eeCHHHhcCCCCCC-EEECCCCc-CCccChhhcccccEEECCCCcccccCHhHhcCCccc
Confidence 3566777777754322111 11234566777777 77775421 1111110 01123445556
Q ss_pred CceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCC-CC-CCCCC
Q 040143 65 EELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSL-PA-VGKLV 142 (232)
Q Consensus 65 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l-~~-l~~L~ 142 (232)
+.|+++++..... ......+..+++|++|++.++....+|..+ +++|++|++++|.. ..+ |. ++.++
T Consensus 148 ~~L~l~~n~l~~~------~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~l-~~~~~~~~~~l~ 216 (330)
T 1xku_A 148 IVVELGTNPLKSS------GIENGAFQGMKKLSYIRIADTNITTIPQGL----PPSLTELHLDGNKI-TKVDAASLKGLN 216 (330)
T ss_dssp CEEECCSSCCCGG------GBCTTGGGGCTTCCEEECCSSCCCSCCSSC----CTTCSEEECTTSCC-CEECTGGGTTCT
T ss_pred cEEECCCCcCCcc------CcChhhccCCCCcCEEECCCCccccCCccc----cccCCEEECCCCcC-CccCHHHhcCCC
Confidence 6666654421100 001122333567777777766655555543 36777777777653 333 22 77778
Q ss_pred CCceeeecccccceEeCccccCCCCCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCC
Q 040143 143 SLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLP 219 (232)
Q Consensus 143 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp 219 (232)
+|++|+++++. +..++... ...+++|++|+++++. +..+. .....+++|+.|++++| +++ .+|
T Consensus 217 ~L~~L~Ls~n~-l~~~~~~~-----~~~l~~L~~L~L~~N~-l~~lp-----~~l~~l~~L~~L~l~~N-~i~-~~~ 279 (330)
T 1xku_A 217 NLAKLGLSFNS-ISAVDNGS-----LANTPHLRELHLNNNK-LVKVP-----GGLADHKYIQVVYLHNN-NIS-AIG 279 (330)
T ss_dssp TCCEEECCSSC-CCEECTTT-----GGGSTTCCEEECCSSC-CSSCC-----TTTTTCSSCCEEECCSS-CCC-CCC
T ss_pred CCCEEECCCCc-CceeChhh-----ccCCCCCCEEECCCCc-CccCC-----hhhccCCCcCEEECCCC-cCC-ccC
Confidence 88888887653 44444321 1237778888877653 33222 23455777777777777 565 443
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.23 E-value=1e-10 Score=99.52 Aligned_cols=30 Identities=20% Similarity=0.071 Sum_probs=14.9
Q ss_pred CCCcccEEeEcCCCCCCCCCCCCCCCcceEE
Q 040143 199 IFPRLVELYIEWCPKLSGKLPDHLPALETLA 229 (232)
Q Consensus 199 ~lp~L~~L~l~~c~~l~~~lp~~l~~L~~L~ 229 (232)
.+++|+.|++++| ++.+..+..+++|+.|+
T Consensus 231 ~l~~L~~L~l~~N-~l~~~~~~~l~~L~~L~ 260 (457)
T 3bz5_A 231 PLTQLTYFDCSVN-PLTELDVSTLSKLTTLH 260 (457)
T ss_dssp TCTTCSEEECCSS-CCSCCCCTTCTTCCEEE
T ss_pred ccCCCCEEEeeCC-cCCCcCHHHCCCCCEEe
Confidence 4556666666655 55522223455555443
No 46
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.23 E-value=6.7e-12 Score=107.65 Aligned_cols=172 Identities=17% Similarity=0.081 Sum_probs=85.3
Q ss_pred hhhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCC
Q 040143 27 KDLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSG 106 (232)
Q Consensus 27 ~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 106 (232)
..+..+++|+ .|.+.+.. +.. .. .++.+++|++|+++++.- ..+.+.++|+.|+++++..
T Consensus 52 ~~~~~l~~L~-~L~Ls~N~-l~~---~~--~l~~l~~L~~L~Ls~N~l-------------~~l~~~~~L~~L~L~~N~l 111 (487)
T 3oja_A 52 ADLAPFTKLE-LLNLSSNV-LYE---TL--DLESLSTLRTLDLNNNYV-------------QELLVGPSIETLHAANNNI 111 (487)
T ss_dssp GGGTTCTTCC-EEECTTSC-CEE---EE--ECTTCTTCCEEECCSSEE-------------EEEEECTTCCEEECCSSCC
T ss_pred HHHhCCCCCC-EEEeeCCC-CCC---Cc--ccccCCCCCEEEecCCcC-------------CCCCCCCCcCEEECcCCcC
Confidence 4567777777 77775432 111 11 166677777777765521 1122234555555555443
Q ss_pred CCCCCccCCCCCCccceEEEeCCCCCCCCCC-CCCCCCCceeeecccccceE-eCccccCC-----------------CC
Q 040143 107 RKFPIWLGDPSFSNMVTLKLIGCANCTSLPA-VGKLVSLKELTIRRMLVLRS-IGSEICGK-----------------DC 167 (232)
Q Consensus 107 ~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~~~~l~~-~~~~~~~~-----------------~~ 167 (232)
..++.. .+++|++|++++|......|. ++.+++|++|+++++. +.. .+..+.+. +.
T Consensus 112 ~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~ 186 (487)
T 3oja_A 112 SRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186 (487)
T ss_dssp CCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred CCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCccccccc
Confidence 333221 245555555555543222222 4555555555555442 222 22222110 01
Q ss_pred CccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC---CCCCcceEEeC
Q 040143 168 STPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD---HLPALETLALS 231 (232)
Q Consensus 168 ~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~---~l~~L~~L~i~ 231 (232)
...+++|++|+++++. +..+. +..+.+++|+.|++++| ++. .+|. .+++|+.|++.
T Consensus 187 ~~~l~~L~~L~Ls~N~-l~~~~-----~~~~~l~~L~~L~Ls~N-~l~-~lp~~l~~l~~L~~L~l~ 245 (487)
T 3oja_A 187 QVVFAKLKTLDLSSNK-LAFMG-----PEFQSAAGVTWISLRNN-KLV-LIEKALRFSQNLEHFDLR 245 (487)
T ss_dssp CCCCTTCCEEECCSSC-CCEEC-----GGGGGGTTCSEEECTTS-CCC-EECTTCCCCTTCCEEECT
T ss_pred cccCCCCCEEECCCCC-CCCCC-----HhHcCCCCccEEEecCC-cCc-ccchhhccCCCCCEEEcC
Confidence 1125566666665542 33222 23445778888888877 666 5664 35667777765
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.23 E-value=1.1e-10 Score=95.02 Aligned_cols=183 Identities=17% Similarity=0.183 Sum_probs=98.2
Q ss_pred hhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhh------------H-HHHHhcCCCCC
Q 040143 28 DLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIA------------E-EKVLDMLQPHT 94 (232)
Q Consensus 28 ~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~------------~-~~~~~~l~~~~ 94 (232)
.++++++|+ .|.+.+.. +.. .....++++++|++|+++++.-..-..... . ......+..++
T Consensus 71 ~~~~l~~L~-~L~L~~n~-l~~---~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 145 (330)
T 1xku_A 71 DFKNLKNLH-TLILINNK-ISK---ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLN 145 (330)
T ss_dssp TTTTCTTCC-EEECCSSC-CCC---BCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCT
T ss_pred hhccCCCCC-EEECCCCc-CCe---eCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCc
Confidence 577788888 88886532 222 122346778889999887663211000000 0 00000112234
Q ss_pred CCceEEEEeeCCCC---CCCccCCCCCCccceEEEeCCCCCCCCCCCCCCCCCceeeecccccceEeCccccCCCCCccC
Q 040143 95 NIKKLEITRYSGRK---FPIWLGDPSFSNMVTLKLIGCANCTSLPAVGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPF 171 (232)
Q Consensus 95 ~L~~L~l~~~~~~~---~p~~~~~~~l~~L~~L~l~~c~~~~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 171 (232)
+|+.|++.++.... .+..+. .+++|++|++++|. +..+|. ...++|++|+++++. +..++... ...+
T Consensus 146 ~L~~L~l~~n~l~~~~~~~~~~~--~l~~L~~L~l~~n~-l~~l~~-~~~~~L~~L~l~~n~-l~~~~~~~-----~~~l 215 (330)
T 1xku_A 146 QMIVVELGTNPLKSSGIENGAFQ--GMKKLSYIRIADTN-ITTIPQ-GLPPSLTELHLDGNK-ITKVDAAS-----LKGL 215 (330)
T ss_dssp TCCEEECCSSCCCGGGBCTTGGG--GCTTCCEEECCSSC-CCSCCS-SCCTTCSEEECTTSC-CCEECTGG-----GTTC
T ss_pred cccEEECCCCcCCccCcChhhcc--CCCCcCEEECCCCc-cccCCc-cccccCCEEECCCCc-CCccCHHH-----hcCC
Confidence 45555554433221 122222 24566666665553 334443 112666666666553 44443221 2237
Q ss_pred CccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC---CCCCcceEEeCC
Q 040143 172 QSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD---HLPALETLALSD 232 (232)
Q Consensus 172 p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~---~l~~L~~L~i~~ 232 (232)
++|++|+++++. +.... +.....+++|+.|++++| ++. .+|. .+++|+.|++.+
T Consensus 216 ~~L~~L~Ls~n~-l~~~~----~~~~~~l~~L~~L~L~~N-~l~-~lp~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 216 NNLAKLGLSFNS-ISAVD----NGSLANTPHLRELHLNNN-KLV-KVPGGLADHKYIQVVYLHN 272 (330)
T ss_dssp TTCCEEECCSSC-CCEEC----TTTGGGSTTCCEEECCSS-CCS-SCCTTTTTCSSCCEEECCS
T ss_pred CCCCEEECCCCc-CceeC----hhhccCCCCCCEEECCCC-cCc-cCChhhccCCCcCEEECCC
Confidence 889999998763 33322 123456899999999999 888 8876 467788888753
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.22 E-value=2.1e-11 Score=100.20 Aligned_cols=161 Identities=17% Similarity=0.183 Sum_probs=99.6
Q ss_pred hhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCC
Q 040143 28 DLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGR 107 (232)
Q Consensus 28 ~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 107 (232)
.+.++++|+ .|.+.+. .+. ......++++++|++|+++++.-.. . .... +..+++|++|+++++...
T Consensus 71 ~~~~l~~L~-~L~L~~n-~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~--~---~~~~---~~~l~~L~~L~L~~n~l~ 137 (353)
T 2z80_A 71 DLQRCVNLQ-ALVLTSN-GIN---TIEEDSFSSLGSLEHLDLSYNYLSN--L---SSSW---FKPLSSLTFLNLLGNPYK 137 (353)
T ss_dssp TTTTCTTCC-EEECTTS-CCC---EECTTTTTTCTTCCEEECCSSCCSS--C---CHHH---HTTCTTCSEEECTTCCCS
T ss_pred HhccCCCCC-EEECCCC-ccC---ccCHhhcCCCCCCCEEECCCCcCCc--C---CHhH---hCCCccCCEEECCCCCCc
Confidence 466677777 7777543 222 1222346777888888887764321 0 0111 344578888988877666
Q ss_pred CCCC--ccCCCCCCccceEEEeCCCCCCCCCC--CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCc
Q 040143 108 KFPI--WLGDPSFSNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLP 183 (232)
Q Consensus 108 ~~p~--~~~~~~l~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 183 (232)
.+|. .+. .+++|++|++++|...+.++. ++.+++|++|+++++. +...... ....+++|++|++.++.
T Consensus 138 ~l~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-----~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 138 TLGETSLFS--HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPK-----SLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp SSCSSCSCT--TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTT-----TTTTCSEEEEEEEECSC
T ss_pred ccCchhhhc--cCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHH-----HHhccccCCeecCCCCc
Confidence 6665 333 478899999988865665543 7888889999888764 4444222 12237888888887654
Q ss_pred ccccccccCcCCccCCCCcccEEeEcCCCCCC
Q 040143 184 ELEFWDTGNQTGYVEIFPRLVELYIEWCPKLS 215 (232)
Q Consensus 184 ~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~ 215 (232)
+.... . .....+++|+.|++++| ++.
T Consensus 210 -l~~~~---~-~~~~~~~~L~~L~L~~n-~l~ 235 (353)
T 2z80_A 210 -HILLL---E-IFVDVTSSVECLELRDT-DLD 235 (353)
T ss_dssp -STTHH---H-HHHHHTTTEEEEEEESC-BCT
T ss_pred -cccch---h-hhhhhcccccEEECCCC-ccc
Confidence 22211 0 01234788888888887 555
No 49
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.22 E-value=7.4e-12 Score=110.76 Aligned_cols=139 Identities=14% Similarity=0.114 Sum_probs=79.9
Q ss_pred CCC--CCCCCCCCCCeEEecCCCCChhhhhcccCCCceEEEcccCCCCChhhhcccccCc------ccCCCceEEEecCC
Q 040143 3 MER--SPLTRQTLSDFIVGRGIGSGLKDLRNLTFLRGKLCISRLENANDSWDAREASLGD------KKGLEELSLGWGSP 74 (232)
Q Consensus 3 ~i~--~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~------l~~L~~L~l~~~~~ 74 (232)
.++ ++++|++|++..... .+.....++++++|+ .|++.+...+.. ...+..+++ +++|++|+++++.-
T Consensus 242 ~l~~~~l~~L~~L~L~~n~l-~~~~p~~l~~l~~L~-~L~Ls~n~~l~~--~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 242 DLKWDNLKDLTDVEVYNCPN-LTKLPTFLKALPEMQ-LINVACNRGISG--EQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp CCCGGGCTTCCEEEEECCTT-CSSCCTTTTTCSSCC-EEECTTCTTSCH--HHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred hhhhcccCCCCEEEecCCcC-CccChHHHhcCCCCC-EEECcCCCCCcc--ccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 355 777777774432211 233345677888888 888865432321 012223333 38888888877643
Q ss_pred CCCCchhhHHHHHh--cCCCCCCCceEEEEeeCCC-CCCCccCCCCCCccceEEEeCCCCCCCCCC-CCCCCC-Cceeee
Q 040143 75 FHSRNEIAEEKVLD--MLQPHTNIKKLEITRYSGR-KFPIWLGDPSFSNMVTLKLIGCANCTSLPA-VGKLVS-LKELTI 149 (232)
Q Consensus 75 ~~~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-l~~L~~-L~~L~l 149 (232)
.. +.. .+..+++|++|+++++... .+| .+. .+++|++|++++|.. ..+|. ++.+++ |++|++
T Consensus 318 ~~---------ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~--~l~~L~~L~L~~N~l-~~lp~~l~~l~~~L~~L~L 384 (636)
T 4eco_A 318 KT---------FPVETSLQKMKKLGMLECLYNQLEGKLP-AFG--SEIKLASLNLAYNQI-TEIPANFCGFTEQVENLSF 384 (636)
T ss_dssp SS---------CCCHHHHTTCTTCCEEECCSCCCEEECC-CCE--EEEEESEEECCSSEE-EECCTTSEEECTTCCEEEC
T ss_pred Cc---------cCchhhhccCCCCCEEeCcCCcCccchh-hhC--CCCCCCEEECCCCcc-ccccHhhhhhcccCcEEEc
Confidence 21 112 3445678888888776655 456 332 356777777776653 35554 666776 777777
Q ss_pred cccccceEeC
Q 040143 150 RRMLVLRSIG 159 (232)
Q Consensus 150 ~~~~~l~~~~ 159 (232)
+++. +..++
T Consensus 385 s~N~-l~~lp 393 (636)
T 4eco_A 385 AHNK-LKYIP 393 (636)
T ss_dssp CSSC-CSSCC
T ss_pred cCCc-Ccccc
Confidence 6653 33444
No 50
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.22 E-value=3.7e-11 Score=97.10 Aligned_cols=88 Identities=20% Similarity=0.140 Sum_probs=47.7
Q ss_pred CcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCCC-CccCCCCCCccceEEEeCCCCCCC--C
Q 040143 59 GDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKFP-IWLGDPSFSNMVTLKLIGCANCTS--L 135 (232)
Q Consensus 59 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~l~~c~~~~~--l 135 (232)
+.+++|++|+++++.-... +........ ..+++|++|+++++....++ ..+. .+++|++|++++|...+. +
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~--~~~~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~ 191 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR--DAWLAELQQ--WLKPGLKVLSIAQAHSLNFSCEQVR--VFPALSTLDLSDNPELGERGL 191 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS--SSHHHHHHT--TCCTTCCEEEEESCSCCCCCTTTCC--CCSSCCEEECCSCTTCHHHHH
T ss_pred hcCCCccEEEccCCCCcch--hHHHHHHHH--hhcCCCcEEEeeCCCCccchHHHhc--cCCCCCEEECCCCCcCcchHH
Confidence 5667777777776543211 111111111 11367777777776655544 3443 466777777777654332 1
Q ss_pred C-C--CCCCCCCceeeeccc
Q 040143 136 P-A--VGKLVSLKELTIRRM 152 (232)
Q Consensus 136 ~-~--l~~L~~L~~L~l~~~ 152 (232)
+ . ++.+++|++|+++++
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N 211 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNA 211 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTS
T ss_pred HHHHHhccCCCCCEEECCCC
Confidence 1 1 266677777777665
No 51
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.22 E-value=1.1e-10 Score=97.18 Aligned_cols=109 Identities=13% Similarity=0.147 Sum_probs=56.7
Q ss_pred hhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCC
Q 040143 29 LRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRK 108 (232)
Q Consensus 29 L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 108 (232)
++.+++|+ .|.+.+.. +.. .....++.+++|++|+++++.-... ....+..+++|++|+++++....
T Consensus 65 ~~~l~~L~-~L~L~~n~-i~~---~~~~~~~~l~~L~~L~L~~n~l~~~--------~~~~~~~l~~L~~L~L~~n~l~~ 131 (390)
T 3o6n_A 65 LDSFRQVE-LLNLNDLQ-IEE---IDTYAFAYAHTIQKLYMGFNAIRYL--------PPHVFQNVPLLTVLVLERNDLSS 131 (390)
T ss_dssp HHHCCCCS-EEECTTSC-CCE---ECTTTTTTCTTCCEEECCSSCCCCC--------CTTTTTTCTTCCEEECCSSCCCC
T ss_pred hcccccCc-EEECCCCc-ccc---cChhhccCCCCcCEEECCCCCCCcC--------CHHHhcCCCCCCEEECCCCccCc
Confidence 45666676 67765422 211 1112356667777777766532110 01223445667777776665555
Q ss_pred CCCccCCCCCCccceEEEeCCCCCCCCC-C-CCCCCCCceeeeccc
Q 040143 109 FPIWLGDPSFSNMVTLKLIGCANCTSLP-A-VGKLVSLKELTIRRM 152 (232)
Q Consensus 109 ~p~~~~~~~l~~L~~L~l~~c~~~~~l~-~-l~~L~~L~~L~l~~~ 152 (232)
+|..+.. .+++|++|++++|.. ..++ . ++.+++|++|+++++
T Consensus 132 l~~~~~~-~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 132 LPRGIFH-NTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSN 175 (390)
T ss_dssp CCTTTTT-TCTTCCEEECCSSCC-CBCCTTTTSSCTTCCEEECCSS
T ss_pred CCHHHhc-CCCCCcEEECCCCcc-CccChhhccCCCCCCEEECCCC
Confidence 5543211 356666666666543 2332 2 556666666666544
No 52
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.20 E-value=9.2e-12 Score=100.90 Aligned_cols=54 Identities=22% Similarity=0.203 Sum_probs=35.1
Q ss_pred CCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC---CCCCcceEEeCC
Q 040143 171 FQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD---HLPALETLALSD 232 (232)
Q Consensus 171 ~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~---~l~~L~~L~i~~ 232 (232)
+++|++|+++++. +..+. .....+++|+.|++++| ++. .+|. .+++|+.|++.+
T Consensus 190 l~~L~~L~Ls~N~-l~~l~-----~~~~~l~~L~~L~L~~N-~l~-~l~~~~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 190 FAKLKTLDLSSNK-LAFMG-----PEFQSAAGVTWISLRNN-KLV-LIEKALRFSQNLEHFDLRG 246 (317)
T ss_dssp CTTCCEEECCSSC-CCEEC-----GGGGGGTTCSEEECTTS-CCC-EECTTCCCCTTCCEEECTT
T ss_pred cccCCEEECCCCc-CCcch-----hhhcccCcccEEECcCC-ccc-chhhHhhcCCCCCEEEccC
Confidence 6667777776642 33322 23445788888888888 777 6664 457788887753
No 53
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.20 E-value=4e-11 Score=105.31 Aligned_cols=169 Identities=15% Similarity=0.082 Sum_probs=102.3
Q ss_pred CCCCCCCCCeEEecCCCCChhhhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHH
Q 040143 7 PLTRQTLSDFIVGRGIGSGLKDLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKV 86 (232)
Q Consensus 7 L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 86 (232)
|.+|+.|.+. ......+..+..+++|+ .|.+.+. .+.... .+..+++|+.|.++++....
T Consensus 42 L~~L~~L~l~---~n~i~~l~~l~~l~~L~-~L~Ls~N-~l~~~~-----~l~~l~~L~~L~Ls~N~l~~---------- 101 (605)
T 1m9s_A 42 LNSIDQIIAN---NSDIKSVQGIQYLPNVT-KLFLNGN-KLTDIK-----PLTNLKNLGWLFLDENKIKD---------- 101 (605)
T ss_dssp HTTCCCCBCT---TCCCCCCTTGGGCTTCC-EEECTTS-CCCCCG-----GGGGCTTCCEEECCSSCCCC----------
T ss_pred CCCCCEEECc---CCCCCCChHHccCCCCC-EEEeeCC-CCCCCh-----hhccCCCCCEEECcCCCCCC----------
Confidence 4455555332 22223344567777777 7777543 222221 15677788888887664221
Q ss_pred HhcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCCCCCCCCCceeeecccccceEeCccccCCC
Q 040143 87 LDMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPAVGKLVSLKELTIRRMLVLRSIGSEICGKD 166 (232)
Q Consensus 87 ~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~ 166 (232)
+..+..+++|+.|+++++....++.. . .+++|++|+|++|. +..++.++.+++|+.|++++|. +..++. +
T Consensus 102 l~~l~~l~~L~~L~Ls~N~l~~l~~l-~--~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~-l~~~~~-l---- 171 (605)
T 1m9s_A 102 LSSLKDLKKLKSLSLEHNGISDINGL-V--HLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQ-ISDIVP-L---- 171 (605)
T ss_dssp CTTSTTCTTCCEEECTTSCCCCCGGG-G--GCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSSC-CCCCGG-G----
T ss_pred ChhhccCCCCCEEEecCCCCCCCccc-c--CCCccCEEECCCCc-cCCchhhcccCCCCEEECcCCc-CCCchh-h----
Confidence 22456667888888877665555432 2 36788888888775 4556667788888888887763 444332 2
Q ss_pred CCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCC
Q 040143 167 CSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLS 215 (232)
Q Consensus 167 ~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~ 215 (232)
..+++|+.|+++++. +..+. ....+++|+.|++.+| .+.
T Consensus 172 --~~l~~L~~L~Ls~N~-i~~l~------~l~~l~~L~~L~L~~N-~l~ 210 (605)
T 1m9s_A 172 --AGLTKLQNLYLSKNH-ISDLR------ALAGLKNLDVLELFSQ-ECL 210 (605)
T ss_dssp --TTCTTCCEEECCSSC-CCBCG------GGTTCTTCSEEECCSE-EEE
T ss_pred --ccCCCCCEEECcCCC-CCCCh------HHccCCCCCEEEccCC-cCc
Confidence 237888888887763 33322 3455788888888877 444
No 54
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.18 E-value=2e-10 Score=98.90 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=22.2
Q ss_pred CCCccceEEEeCCCCCCCCCC-CCCCCCCceeeeccc
Q 040143 117 SFSNMVTLKLIGCANCTSLPA-VGKLVSLKELTIRRM 152 (232)
Q Consensus 117 ~l~~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~~ 152 (232)
.+++|++|++++|...+.+|. ++.+++|++|+++++
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 358 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSS
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCC
Confidence 355666666666654443443 667777777777665
No 55
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.18 E-value=6e-11 Score=104.17 Aligned_cols=167 Identities=16% Similarity=0.172 Sum_probs=117.9
Q ss_pred hhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCC
Q 040143 28 DLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGR 107 (232)
Q Consensus 28 ~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 107 (232)
.+..|.+|+ .|.+.+. .+..+ ..+..+++|+.|+++++.-.. + ..+..+++|+.|+++++...
T Consensus 38 ~~~~L~~L~-~L~l~~n-~i~~l-----~~l~~l~~L~~L~Ls~N~l~~---------~-~~l~~l~~L~~L~Ls~N~l~ 100 (605)
T 1m9s_A 38 TQNELNSID-QIIANNS-DIKSV-----QGIQYLPNVTKLFLNGNKLTD---------I-KPLTNLKNLGWLFLDENKIK 100 (605)
T ss_dssp CHHHHTTCC-CCBCTTC-CCCCC-----TTGGGCTTCCEEECTTSCCCC---------C-GGGGGCTTCCEEECCSSCCC
T ss_pred chhcCCCCC-EEECcCC-CCCCC-----hHHccCCCCCEEEeeCCCCCC---------C-hhhccCCCCCEEECcCCCCC
Confidence 345555666 5665432 23222 136778999999998764321 1 11455789999999988766
Q ss_pred CCCCccCCCCCCccceEEEeCCCCCCCCCCCCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCccccc
Q 040143 108 KFPIWLGDPSFSNMVTLKLIGCANCTSLPAVGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEF 187 (232)
Q Consensus 108 ~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~ 187 (232)
.+| .+. .+++|++|++++|. +..++.++.+++|+.|++++|. +..+ .. ...+++|+.|+++++. +..
T Consensus 101 ~l~-~l~--~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~-l~~l-~~------l~~l~~L~~L~Ls~N~-l~~ 167 (605)
T 1m9s_A 101 DLS-SLK--DLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNK-ITDI-TV------LSRLTKLDTLSLEDNQ-ISD 167 (605)
T ss_dssp CCT-TST--TCTTCCEEECTTSC-CCCCGGGGGCTTCSEEECCSSC-CCCC-GG------GGSCTTCSEEECCSSC-CCC
T ss_pred CCh-hhc--cCCCCCEEEecCCC-CCCCccccCCCccCEEECCCCc-cCCc-hh------hcccCCCCEEECcCCc-CCC
Confidence 665 333 58899999999986 5567779999999999998873 4444 22 2348999999998873 443
Q ss_pred ccccCcCCccCCCCcccEEeEcCCCCCCCCCCC--CCCCcceEEeCC
Q 040143 188 WDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD--HLPALETLALSD 232 (232)
Q Consensus 188 ~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~--~l~~L~~L~i~~ 232 (232)
.. + ...+++|+.|++++| ++. .+|. .+++|+.|++.+
T Consensus 168 ~~-----~-l~~l~~L~~L~Ls~N-~i~-~l~~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 168 IV-----P-LAGLTKLQNLYLSKN-HIS-DLRALAGLKNLDVLELFS 206 (605)
T ss_dssp CG-----G-GTTCTTCCEEECCSS-CCC-BCGGGTTCTTCSEEECCS
T ss_pred ch-----h-hccCCCCCEEECcCC-CCC-CChHHccCCCCCEEEccC
Confidence 33 1 466999999999999 787 5653 578899988753
No 56
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.18 E-value=4.1e-11 Score=96.01 Aligned_cols=168 Identities=16% Similarity=0.123 Sum_probs=115.9
Q ss_pred CCCCCCCCeEEecCCCCChhhhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHHH
Q 040143 8 LTRQTLSDFIVGRGIGSGLKDLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVL 87 (232)
Q Consensus 8 ~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 87 (232)
++|++| .........+..+..+++|+ .|.+.+. .+.... .+.++++|+.|+++++.-.. +
T Consensus 46 ~~L~~L---~l~~~~i~~~~~~~~l~~L~-~L~L~~n-~l~~~~-----~l~~l~~L~~L~l~~n~l~~----------~ 105 (291)
T 1h6t_A 46 NSIDQI---IANNSDIKSVQGIQYLPNVT-KLFLNGN-KLTDIK-----PLANLKNLGWLFLDENKVKD----------L 105 (291)
T ss_dssp HTCCEE---ECTTSCCCCCTTGGGCTTCC-EEECCSS-CCCCCG-----GGTTCTTCCEEECCSSCCCC----------G
T ss_pred CcccEE---EccCCCcccChhHhcCCCCC-EEEccCC-ccCCCc-----ccccCCCCCEEECCCCcCCC----------C
Confidence 344444 33333333445677788888 8887653 232221 16788999999998774321 2
Q ss_pred hcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCCCCCCCCCceeeecccccceEeCccccCCCC
Q 040143 88 DMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPAVGKLVSLKELTIRRMLVLRSIGSEICGKDC 167 (232)
Q Consensus 88 ~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~ 167 (232)
..+..+++|++|+++++....++. +. .+++|++|++++|. +..++.++.+++|++|+++++ .+..++. +
T Consensus 106 ~~l~~l~~L~~L~L~~n~i~~~~~-l~--~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N-~l~~~~~-l----- 174 (291)
T 1h6t_A 106 SSLKDLKKLKSLSLEHNGISDING-LV--HLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDN-QISDIVP-L----- 174 (291)
T ss_dssp GGGTTCTTCCEEECTTSCCCCCGG-GG--GCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSS-CCCCCGG-G-----
T ss_pred hhhccCCCCCEEECCCCcCCCChh-hc--CCCCCCEEEccCCc-CCcchhhccCCCCCEEEccCC-ccccchh-h-----
Confidence 346677899999998877666543 33 47899999999885 566777999999999999887 4555442 2
Q ss_pred CccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCC
Q 040143 168 STPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLS 215 (232)
Q Consensus 168 ~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~ 215 (232)
..+++|+.|+++++ .+..+. ....+++|+.|++++| ++.
T Consensus 175 -~~l~~L~~L~L~~N-~i~~l~------~l~~l~~L~~L~l~~n-~i~ 213 (291)
T 1h6t_A 175 -AGLTKLQNLYLSKN-HISDLR------ALAGLKNLDVLELFSQ-ECL 213 (291)
T ss_dssp -TTCTTCCEEECCSS-CCCBCG------GGTTCTTCSEEEEEEE-EEE
T ss_pred -cCCCccCEEECCCC-cCCCCh------hhccCCCCCEEECcCC-ccc
Confidence 34899999999886 344333 3456999999999987 444
No 57
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.17 E-value=1.7e-10 Score=84.72 Aligned_cols=138 Identities=17% Similarity=0.154 Sum_probs=71.7
Q ss_pred ccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC-CC
Q 040143 61 KKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA-VG 139 (232)
Q Consensus 61 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-l~ 139 (232)
.++|+.|+++++.-.. ..+...+..+++|++|++.++....+ ..+. .+++|++|++++|.....+|. ++
T Consensus 23 ~~~L~~L~l~~n~l~~-------~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~ 92 (168)
T 2ell_A 23 PAAVRELVLDNCKSND-------GKIEGLTAEFVNLEFLSLINVGLISV-SNLP--KLPKLKKLELSENRIFGGLDMLAE 92 (168)
T ss_dssp TTSCSEEECCSCBCBT-------TBCSSCCGGGGGCCEEEEESSCCCCC-SSCC--CCSSCCEEEEESCCCCSCCCHHHH
T ss_pred cccCCEEECCCCCCCh-------hhHHHHHHhCCCCCEEeCcCCCCCCh-hhhc--cCCCCCEEECcCCcCchHHHHHHh
Confidence 3567777776553210 00111123346677777776654444 3333 366777777777654333554 44
Q ss_pred CCCCCceeeecccccceEeCc-cccCCCCCccCCccceEeccCCcccccccccCc--CCccCCCCcccEEeEcCCCCCCC
Q 040143 140 KLVSLKELTIRRMLVLRSIGS-EICGKDCSTPFQSLETLCFSDLPELEFWDTGNQ--TGYVEIFPRLVELYIEWCPKLSG 216 (232)
Q Consensus 140 ~L~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~--~~~~~~lp~L~~L~l~~c~~l~~ 216 (232)
.+++|++|+++++ .+..++. . ....+++|++|+++++. +..+. . ......+|+|+.|++.+| ...
T Consensus 93 ~l~~L~~L~Ls~N-~l~~~~~~~-----~l~~l~~L~~L~l~~N~-l~~~~---~~~~~~~~~l~~L~~L~l~~n-~~~- 160 (168)
T 2ell_A 93 KLPNLTHLNLSGN-KLKDISTLE-----PLKKLECLKSLDLFNCE-VTNLN---DYRESVFKLLPQLTYLDGYDR-EDQ- 160 (168)
T ss_dssp HCTTCCEEECBSS-SCCSSGGGG-----GGSSCSCCCEEECCSSG-GGTST---THHHHHHTTCSSCCEETTEET-TSC-
T ss_pred hCCCCCEEeccCC-ccCcchhHH-----HHhcCCCCCEEEeeCCc-CcchH---HHHHHHHHhCccCcEecCCCC-Chh-
Confidence 5777777777665 3444331 1 11236777777776653 22211 0 002345677777777777 444
Q ss_pred CCCC
Q 040143 217 KLPD 220 (232)
Q Consensus 217 ~lp~ 220 (232)
.+|.
T Consensus 161 ~~~~ 164 (168)
T 2ell_A 161 EAPD 164 (168)
T ss_dssp BCCS
T ss_pred hccc
Confidence 4443
No 58
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.16 E-value=3.1e-11 Score=97.47 Aligned_cols=111 Identities=19% Similarity=0.167 Sum_probs=67.6
Q ss_pred cccCCCceEEEcccCCCCChhhhccccc--CcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCC
Q 040143 31 NLTFLRGKLCISRLENANDSWDAREASL--GDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRK 108 (232)
Q Consensus 31 ~L~~L~~~L~i~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 108 (232)
.+.+|+ .|.+.+..-.. .....+ .++++|++|+++++.-......... ..+..+++|++|+++++....
T Consensus 89 ~~~~L~-~L~l~~n~l~~----~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~----~~~~~~~~L~~L~Ls~n~l~~ 159 (310)
T 4glp_A 89 AYSRLK-ELTLEDLKITG----TMPPLPLEATGLALSSLRLRNVSWATGRSWLAE----LQQWLKPGLKVLSIAQAHSPA 159 (310)
T ss_dssp HHSCCC-EEEEESCCCBS----CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHH----HHTTBCSCCCEEEEECCSSCC
T ss_pred ccCcee-EEEeeCCEecc----chhhhhhhccCCCCCEEEeecccccchhhhhHH----HHhhhccCCCEEEeeCCCcch
Confidence 345577 78886543211 112233 6788999999987753221110000 123356899999998877665
Q ss_pred CC-CccCCCCCCccceEEEeCCCCCCC--CC--C-CCCCCCCceeeeccc
Q 040143 109 FP-IWLGDPSFSNMVTLKLIGCANCTS--LP--A-VGKLVSLKELTIRRM 152 (232)
Q Consensus 109 ~p-~~~~~~~l~~L~~L~l~~c~~~~~--l~--~-l~~L~~L~~L~l~~~ 152 (232)
.+ ..+. .+++|++|++++|...+. ++ . ++.+++|++|+++++
T Consensus 160 ~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N 207 (310)
T 4glp_A 160 FSCEQVR--AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT 207 (310)
T ss_dssp CCTTSCC--CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS
T ss_pred hhHHHhc--cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC
Confidence 54 4443 478899999988864321 21 2 467888888888776
No 59
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.16 E-value=3.8e-10 Score=87.58 Aligned_cols=170 Identities=12% Similarity=0.082 Sum_probs=116.4
Q ss_pred CCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecC-CCCCCchhhHHHHH-hcCCCCCCCceEEEEe-eCCCCCC
Q 040143 34 FLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGS-PFHSRNEIAEEKVL-DMLQPHTNIKKLEITR-YSGRKFP 110 (232)
Q Consensus 34 ~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~-~~~~~~p 110 (232)
.++ .+++.+. .+... ....++++++|++|+++++. -.. +. ..+..+++|++|++.+ +....+|
T Consensus 32 ~l~-~L~l~~n-~l~~i---~~~~~~~l~~L~~L~l~~n~~l~~---------i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 32 STQ-TLKLIET-HLRTI---PSHAFSNLPNISRIYVSIDVTLQQ---------LESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp TCC-EEEEESC-CCSEE---CTTTTTTCTTCCEEEEECCSSCCE---------ECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred ccc-EEEEeCC-cceEE---CHHHccCCCCCcEEeCCCCCCcce---------eCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 466 7777543 22221 12346788999999998874 211 11 1234568999999998 5554454
Q ss_pred -CccCCCCCCccceEEEeCCCCCCCCCCCCCCCCCc---eeeecccccceEeCccccCCCCCccCCccc-eEeccCCccc
Q 040143 111 -IWLGDPSFSNMVTLKLIGCANCTSLPAVGKLVSLK---ELTIRRMLVLRSIGSEICGKDCSTPFQSLE-TLCFSDLPEL 185 (232)
Q Consensus 111 -~~~~~~~l~~L~~L~l~~c~~~~~l~~l~~L~~L~---~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~-~L~l~~~~~l 185 (232)
.++. .+++|++|++++|. +..+|.++.+++|+ +|+++++..++.++...+. .+++|+ +|+++++. +
T Consensus 98 ~~~f~--~l~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~-----~l~~L~~~L~l~~n~-l 168 (239)
T 2xwt_C 98 PDALK--ELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQ-----GLCNETLTLKLYNNG-F 168 (239)
T ss_dssp TTSEE--CCTTCCEEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTT-----TTBSSEEEEECCSCC-C
T ss_pred HHHhC--CCCCCCEEeCCCCC-CccccccccccccccccEEECCCCcchhhcCccccc-----chhcceeEEEcCCCC-C
Confidence 3333 47899999999986 55688888888888 9999987678887754333 388999 99998753 4
Q ss_pred ccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC----CC-CCcceEEeCC
Q 040143 186 EFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD----HL-PALETLALSD 232 (232)
Q Consensus 186 ~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~----~l-~~L~~L~i~~ 232 (232)
..+. ......++|+.|++.+|+.++ .+|. .+ ++|+.|++++
T Consensus 169 ~~i~-----~~~~~~~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 169 TSVQ-----GYAFNGTKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp CEEC-----TTTTTTCEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTT
T ss_pred cccC-----HhhcCCCCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCC
Confidence 4333 222234899999999996587 5543 35 7888888763
No 60
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.15 E-value=1.8e-10 Score=91.29 Aligned_cols=175 Identities=19% Similarity=0.190 Sum_probs=101.7
Q ss_pred hhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCC
Q 040143 28 DLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGR 107 (232)
Q Consensus 28 ~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 107 (232)
.+.++++|+ .+++.+. .+.. .....++++++|++|+++++.-.. .....+..+++|++|++.++...
T Consensus 47 ~~~~l~~L~-~L~l~~n-~l~~---~~~~~~~~l~~L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~ 113 (276)
T 2z62_A 47 SFFSFPELQ-VLDLSRC-EIQT---IEDGAYQSLSHLSTLILTGNPIQS--------LALGAFSGLSSLQKLVAVETNLA 113 (276)
T ss_dssp TTTTCTTCS-EEECTTC-CCCE---ECTTTTTTCTTCCEEECTTCCCCE--------ECTTTTTTCTTCCEEECTTSCCC
T ss_pred HhccccCCc-EEECCCC-cCCc---cCHHHccCCcCCCEEECCCCccCc--------cChhhhcCCccccEEECCCCCcc
Confidence 456666777 7776543 2211 112245667788888886653211 01123455678888888776655
Q ss_pred CCCC-ccCCCCCCccceEEEeCCCCCC-CCCC-CCCCCCCceeeecccccceEeCccccCCCCCccCCccc----eEecc
Q 040143 108 KFPI-WLGDPSFSNMVTLKLIGCANCT-SLPA-VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLE----TLCFS 180 (232)
Q Consensus 108 ~~p~-~~~~~~l~~L~~L~l~~c~~~~-~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~----~L~l~ 180 (232)
.++. .+. .+++|++|++++|.... .+|. ++.+++|++|+++++ .+..++...+. .++.|+ .|+++
T Consensus 114 ~~~~~~~~--~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-----~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 114 SLENFPIG--HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLR-----VLHQMPLLNLSLDLS 185 (276)
T ss_dssp CSTTCCCT--TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGH-----HHHTCTTCCEEEECC
T ss_pred ccCchhcc--cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhh-----hhhhccccceeeecC
Confidence 5544 233 46788888888775432 3454 778888888888776 35554432111 144444 56665
Q ss_pred CCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC----CCCCcceEEeC
Q 040143 181 DLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD----HLPALETLALS 231 (232)
Q Consensus 181 ~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~----~l~~L~~L~i~ 231 (232)
++. +..+. ......++|+.|++++| +++ .+|. .+++|++|++.
T Consensus 186 ~n~-l~~~~-----~~~~~~~~L~~L~L~~n-~l~-~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 186 LNP-MNFIQ-----PGAFKEIRLKELALDTN-QLK-SVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp SSC-CCEEC-----TTSSCSCCEEEEECCSS-CCS-CCCTTTTTTCCSCCEEECC
T ss_pred CCc-ccccC-----ccccCCCcccEEECCCC-cee-ecCHhHhcccccccEEEcc
Confidence 542 22222 12233457888888888 677 5553 36778888775
No 61
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.15 E-value=5.9e-11 Score=102.85 Aligned_cols=178 Identities=17% Similarity=0.201 Sum_probs=104.9
Q ss_pred hhhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCC
Q 040143 27 KDLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSG 106 (232)
Q Consensus 27 ~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 106 (232)
..+.++++|+ .|.+.+.. +. ......++++++|++|+++++.-.. . ....+..+++|++|+++++..
T Consensus 44 ~~~~~l~~L~-~L~Ls~n~-i~---~~~~~~~~~l~~L~~L~Ls~n~l~~--~------~~~~~~~l~~L~~L~Ls~n~l 110 (549)
T 2z81_A 44 GDLRACANLQ-VLILKSSR-IN---TIEGDAFYSLGSLEHLDLSDNHLSS--L------SSSWFGPLSSLKYLNLMGNPY 110 (549)
T ss_dssp STTSSCTTCC-EEECTTSC-CC---EECTTTTTTCTTCCEEECTTSCCCS--C------CHHHHTTCTTCCEEECTTCCC
T ss_pred hhhhcCCccc-EEECCCCC-cC---ccChhhccccccCCEEECCCCccCc--c------CHHHhccCCCCcEEECCCCcc
Confidence 3466777777 77776432 21 1222346777888888887664221 0 111234567888888877665
Q ss_pred CC--CCCccCCCCCCccceEEEeCCCCCCCCCC--CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCC
Q 040143 107 RK--FPIWLGDPSFSNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDL 182 (232)
Q Consensus 107 ~~--~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~ 182 (232)
.. .|..+. .+++|++|++++|...+.+|. ++.+++|++|+++++.--...+..+ ..+++|+.|++.++
T Consensus 111 ~~~~~~~~~~--~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l------~~l~~L~~L~l~~n 182 (549)
T 2z81_A 111 QTLGVTSLFP--NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL------KSIRDIHHLTLHLS 182 (549)
T ss_dssp SSSCSSCSCT--TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT------TTCSEEEEEEEECS
T ss_pred cccchhhhhh--ccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh------hccccCceEecccC
Confidence 53 344444 478888888888876666663 7888888888887764322233222 23777888877654
Q ss_pred cccccccccCcCCccCCCCcccEEeEcCCCCCCCCC--C----CCCCCcceEEeC
Q 040143 183 PELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKL--P----DHLPALETLALS 231 (232)
Q Consensus 183 ~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~l--p----~~l~~L~~L~i~ 231 (232)
.. .... . ...+.+++|+.|++++| ++.+.. | ..+++|+.|++.
T Consensus 183 ~~-~~~~---~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~L~~L~l~ 231 (549)
T 2z81_A 183 ES-AFLL---E-IFADILSSVRYLELRDT-NLARFQFSPLPVDEVSSPMKKLAFR 231 (549)
T ss_dssp BS-TTHH---H-HHHHSTTTBSEEEEESC-BCTTCCCCCCSSCCCCCCCCEEEEE
T ss_pred cc-cccc---h-hhHhhcccccEEEccCC-ccccccccccchhhhhhcccceecc
Confidence 31 1111 0 01134788888888887 555211 1 235566666553
No 62
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.14 E-value=9.4e-10 Score=93.55 Aligned_cols=186 Identities=16% Similarity=0.064 Sum_probs=94.0
Q ss_pred CCCCCCCCCCeEEecCCCCChhhhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHH
Q 040143 6 SPLTRQTLSDFIVGRGIGSGLKDLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEK 85 (232)
Q Consensus 6 ~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 85 (232)
++++|++|+... ..-..+..++.+++|+ .|.+.+.. +... .++.+++|++|+++++.-..
T Consensus 40 ~l~~L~~L~Ls~---n~l~~~~~l~~l~~L~-~L~Ls~n~-l~~~------~~~~l~~L~~L~Ls~N~l~~--------- 99 (457)
T 3bz5_A 40 QLATLTSLDCHN---SSITDMTGIEKLTGLT-KLICTSNN-ITTL------DLSQNTNLTYLACDSNKLTN--------- 99 (457)
T ss_dssp HHTTCCEEECCS---SCCCCCTTGGGCTTCS-EEECCSSC-CSCC------CCTTCTTCSEEECCSSCCSC---------
T ss_pred HcCCCCEEEccC---CCcccChhhcccCCCC-EEEccCCc-CCeE------ccccCCCCCEEECcCCCCce---------
Confidence 345555554332 1111223566666676 67765432 2221 15566677777776553211
Q ss_pred HHhcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCCCCCCCCCceeeecccccceEeCccccC-
Q 040143 86 VLDMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPAVGKLVSLKELTIRRMLVLRSIGSEICG- 164 (232)
Q Consensus 86 ~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~- 164 (232)
+ .+..+++|++|+++++....+| +. .+++|++|++++|. +..++ ++.+++|++|+++++..+..++ +..
T Consensus 100 ~--~~~~l~~L~~L~L~~N~l~~l~--~~--~l~~L~~L~l~~N~-l~~l~-l~~l~~L~~L~l~~n~~~~~~~--~~~l 169 (457)
T 3bz5_A 100 L--DVTPLTKLTYLNCDTNKLTKLD--VS--QNPLLTYLNCARNT-LTEID-VSHNTQLTELDCHLNKKITKLD--VTPQ 169 (457)
T ss_dssp C--CCTTCTTCCEEECCSSCCSCCC--CT--TCTTCCEEECTTSC-CSCCC-CTTCTTCCEEECTTCSCCCCCC--CTTC
T ss_pred e--ecCCCCcCCEEECCCCcCCeec--CC--CCCcCCEEECCCCc-cceec-cccCCcCCEEECCCCCcccccc--cccC
Confidence 0 1444566667766665444443 22 35566666666554 23332 5555566666655553333221 111
Q ss_pred ----------C----CCCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC-CCCCcceEE
Q 040143 165 ----------K----DCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD-HLPALETLA 229 (232)
Q Consensus 165 ----------~----~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~-~l~~L~~L~ 229 (232)
. -....+++|+.|.+.++. +... ..+.+++|+.|++++| ++. .+|- .+++|+.|+
T Consensus 170 ~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~-l~~~-------~l~~l~~L~~L~Ls~N-~l~-~ip~~~l~~L~~L~ 239 (457)
T 3bz5_A 170 TQLTTLDCSFNKITELDVSQNKLLNRLNCDTNN-ITKL-------DLNQNIQLTFLDCSSN-KLT-EIDVTPLTQLTYFD 239 (457)
T ss_dssp TTCCEEECCSSCCCCCCCTTCTTCCEEECCSSC-CSCC-------CCTTCTTCSEEECCSS-CCS-CCCCTTCTTCSEEE
T ss_pred CcCCEEECCCCccceeccccCCCCCEEECcCCc-CCee-------ccccCCCCCEEECcCC-ccc-ccCccccCCCCEEE
Confidence 0 001224555555554432 1111 2345788888888888 777 4663 567788877
Q ss_pred eC
Q 040143 230 LS 231 (232)
Q Consensus 230 i~ 231 (232)
++
T Consensus 240 l~ 241 (457)
T 3bz5_A 240 CS 241 (457)
T ss_dssp CC
T ss_pred ee
Confidence 65
No 63
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.14 E-value=1.4e-10 Score=105.75 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=16.3
Q ss_pred CCCcccEEeEcCCCCCCCCCCC---CCCCcceEEeC
Q 040143 199 IFPRLVELYIEWCPKLSGKLPD---HLPALETLALS 231 (232)
Q Consensus 199 ~lp~L~~L~l~~c~~l~~~lp~---~l~~L~~L~i~ 231 (232)
.+++|+.|++++| ++.+..|. .+++|+.|+++
T Consensus 312 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~ 346 (844)
T 3j0a_A 312 GLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQ 346 (844)
T ss_dssp TCSSCCEEEEESC-CCSCCCSCSCSSCTTCCEEECC
T ss_pred CCCCCCEEECCCC-CCCccCHHHhcCCCCCCEEECC
Confidence 3556666666665 44422232 34556665553
No 64
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.14 E-value=1.1e-10 Score=95.11 Aligned_cols=39 Identities=21% Similarity=-0.015 Sum_probs=21.1
Q ss_pred CCCCCCCCCCCCCeEEecCCCCChhhhhcccCCCceEEEcc
Q 040143 3 MERSPLTRQTLSDFIVGRGIGSGLKDLRNLTFLRGKLCISR 43 (232)
Q Consensus 3 ~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~ 43 (232)
.++++++|++|++...... ......++++++|+ .|.+.+
T Consensus 73 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~-~L~L~~ 111 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQ-KLYISK 111 (332)
T ss_dssp TTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCC-EEECCS
T ss_pred HhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCC-EEECCC
Confidence 3566777777743321111 11234567777777 777654
No 65
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.14 E-value=4.4e-10 Score=88.89 Aligned_cols=158 Identities=22% Similarity=0.243 Sum_probs=107.7
Q ss_pred hhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCC
Q 040143 28 DLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGR 107 (232)
Q Consensus 28 ~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 107 (232)
.+.++++|+ .|.+.+. .+..+. ...+.++++|++|+++++.-... ....+..+++|++|+++++...
T Consensus 56 ~~~~l~~L~-~L~l~~n-~l~~i~---~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~l~~n~l~ 122 (270)
T 2o6q_A 56 AFHRLTKLR-LLYLNDN-KLQTLP---AGIFKELKNLETLWVTDNKLQAL--------PIGVFDQLVNLAELRLDRNQLK 122 (270)
T ss_dssp SSSSCTTCC-EEECCSS-CCSCCC---TTTTSSCTTCCEEECCSSCCCCC--------CTTTTTTCSSCCEEECCSSCCC
T ss_pred HhcCCCCCC-EEECCCC-ccCeeC---hhhhcCCCCCCEEECCCCcCCcC--------CHhHcccccCCCEEECCCCccC
Confidence 567788888 8887643 222221 12356789999999987643210 0122455689999999887776
Q ss_pred CCCCc-cCCCCCCccceEEEeCCCCCCCCCC--CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcc
Q 040143 108 KFPIW-LGDPSFSNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPE 184 (232)
Q Consensus 108 ~~p~~-~~~~~l~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 184 (232)
.+|.. +. .+++|++|++++|. +..+|. ++.+++|++|+++++ .+..++...+ ..+++|++|++.++ .
T Consensus 123 ~~~~~~~~--~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-----~~l~~L~~L~L~~N-~ 192 (270)
T 2o6q_A 123 SLPPRVFD--SLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAF-----DKLTELKTLKLDNN-Q 192 (270)
T ss_dssp CCCTTTTT--TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTT-----TTCTTCCEEECCSS-C
T ss_pred eeCHHHhC--cCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCC-cCcEeChhHh-----ccCCCcCEEECCCC-c
Confidence 66543 33 57899999999885 556665 889999999999876 4555554322 23899999999886 3
Q ss_pred cccccccCcCCccCCCCcccEEeEcCCC
Q 040143 185 LEFWDTGNQTGYVEIFPRLVELYIEWCP 212 (232)
Q Consensus 185 l~~~~~~~~~~~~~~lp~L~~L~l~~c~ 212 (232)
+..+. . .....+++|+.|++.+++
T Consensus 193 l~~~~---~-~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 193 LKRVP---E-GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CSCCC---T-TTTTTCTTCCEEECCSSC
T ss_pred CCcCC---H-HHhccccCCCEEEecCCC
Confidence 44433 1 223568999999998763
No 66
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.13 E-value=1.3e-12 Score=106.40 Aligned_cols=15 Identities=27% Similarity=0.271 Sum_probs=6.9
Q ss_pred cCcccCCCceEEEec
Q 040143 58 LGDKKGLEELSLGWG 72 (232)
Q Consensus 58 l~~l~~L~~L~l~~~ 72 (232)
++++++|++|++++|
T Consensus 138 l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 138 LAKNSNLVRLNLSGC 152 (336)
T ss_dssp HTTCTTCSEEECTTC
T ss_pred HhcCCCCCEEECCCC
Confidence 334445555555433
No 67
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.13 E-value=7.1e-11 Score=102.69 Aligned_cols=128 Identities=18% Similarity=0.125 Sum_probs=87.8
Q ss_pred CCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCC--CCCCCCCCceeeecccccceEeCccccCCCCCc
Q 040143 92 PHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLP--AVGKLVSLKELTIRRMLVLRSIGSEICGKDCST 169 (232)
Q Consensus 92 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~--~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 169 (232)
.+++|++|++.++....+|..+. .+++|++|++++|......+ .++.+++|++|++++|. +....... ..
T Consensus 371 ~~~~L~~L~l~~n~l~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-----~~ 442 (570)
T 2z63_A 371 GTTSLKYLDLSFNGVITMSSNFL--GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGI-----FN 442 (570)
T ss_dssp TCSCCCEEECCSCSEEEEEEEEE--TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC-CEECCTTT-----TT
T ss_pred ccCccCEEECCCCcccccccccc--ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc-ccccchhh-----hh
Confidence 34778888887765555554443 47889999998876544444 37889999999998875 33332221 23
Q ss_pred cCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC---CCCCcceEEeCC
Q 040143 170 PFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD---HLPALETLALSD 232 (232)
Q Consensus 170 ~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~---~l~~L~~L~i~~ 232 (232)
.+++|++|++.++.-.... ++.....+++|+.|++++| ++.+..|. .+++|+.|++++
T Consensus 443 ~l~~L~~L~l~~n~l~~~~----~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 443 GLSSLEVLKMAGNSFQENF----LPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp TCTTCCEEECTTCEEGGGE----ECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred cCCcCcEEECcCCcCcccc----chhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCC
Confidence 3899999999887532111 2234567999999999999 77744454 467899988763
No 68
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.12 E-value=1.5e-10 Score=102.92 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=18.6
Q ss_pred hhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEec
Q 040143 28 DLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWG 72 (232)
Q Consensus 28 ~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 72 (232)
.+..+++|+ .+++.+..-.. ......+.++++|++|+++++
T Consensus 400 ~~~~l~~L~-~L~L~~N~l~~---~~~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 400 AFSWLGHLE-VLDLGLNEIGQ---ELTGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp TTTTCTTCC-EEECCSSCCEE---ECCSGGGTTCTTCCEEECCSC
T ss_pred hhhCCCCCC-EEeCCCCcCcc---ccCcccccCcccccEEecCCC
Confidence 345555565 56654322100 000123445566666666544
No 69
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.11 E-value=3.3e-10 Score=85.38 Aligned_cols=122 Identities=14% Similarity=0.163 Sum_probs=91.0
Q ss_pred CCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCCCCCCCCCceeeecccccceE-eCccccCCCCCccCC
Q 040143 94 TNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPAVGKLVSLKELTIRRMLVLRS-IGSEICGKDCSTPFQ 172 (232)
Q Consensus 94 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~l~~L~~L~~L~l~~~~~l~~-~~~~~~~~~~~~~~p 172 (232)
++|+.|+++++....+|. +. .+++|++|++++| ....++.++.+++|++|+++++. +.. .+.. ...++
T Consensus 44 ~~L~~L~l~~n~i~~l~~-l~--~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~------l~~l~ 112 (197)
T 4ezg_A 44 NSLTYITLANINVTDLTG-IE--YAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKD-VTSDKIPN------LSGLT 112 (197)
T ss_dssp HTCCEEEEESSCCSCCTT-GG--GCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTT-CBGGGSCC------CTTCT
T ss_pred CCccEEeccCCCccChHH-Hh--cCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCc-cCcccChh------hcCCC
Confidence 589999999887776673 33 4889999999998 56777779999999999998864 332 2222 23489
Q ss_pred ccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC--CCCCcceEEeCC
Q 040143 173 SLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD--HLPALETLALSD 232 (232)
Q Consensus 173 ~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~--~l~~L~~L~i~~ 232 (232)
+|++|+++++. +.... +...+.+++|+.|++++|..+. .+|. .+++|+.|++.+
T Consensus 113 ~L~~L~Ls~n~-i~~~~----~~~l~~l~~L~~L~L~~n~~i~-~~~~l~~l~~L~~L~l~~ 168 (197)
T 4ezg_A 113 SLTLLDISHSA-HDDSI----LTKINTLPKVNSIDLSYNGAIT-DIMPLKTLPELKSLNIQF 168 (197)
T ss_dssp TCCEEECCSSB-CBGGG----HHHHTTCSSCCEEECCSCTBCC-CCGGGGGCSSCCEEECTT
T ss_pred CCCEEEecCCc-cCcHh----HHHHhhCCCCCEEEccCCCCcc-ccHhhcCCCCCCEEECCC
Confidence 99999998864 32211 1234569999999999995466 6763 578899998763
No 70
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.11 E-value=2.5e-10 Score=98.38 Aligned_cols=147 Identities=14% Similarity=0.108 Sum_probs=90.8
Q ss_pred CcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCC---CCccCCCCCCccceEEEeCCCCCCCC
Q 040143 59 GDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKF---PIWLGDPSFSNMVTLKLIGCANCTSL 135 (232)
Q Consensus 59 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---p~~~~~~~l~~L~~L~l~~c~~~~~l 135 (232)
..+++|++|+++++.-.. .....+..+++|++|+++++....+ |.++. .+++|++|++++|.....+
T Consensus 321 ~~l~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~--~l~~L~~L~Ls~N~l~~~l 390 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTD--------TVFENCGHLTELETLILQMNQLKELSKIAEMTT--QMKSLQQLDISQNSVSYDE 390 (520)
T ss_dssp SSCCCCCEEECCSSCCCT--------TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHT--TCTTCCEEECCSSCCBCCG
T ss_pred hhCCcccEEEeECCccCh--------hhhhhhccCCCCCEEEccCCccCccccchHHHh--hCCCCCEEECCCCcCCccc
Confidence 455667777776653211 1223445567777777776655532 33343 4677777777777654446
Q ss_pred CC--CCCCCCCceeeecccccceEeCccccCCCCCccC-CccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCC
Q 040143 136 PA--VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPF-QSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCP 212 (232)
Q Consensus 136 ~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~-p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~ 212 (232)
|. +..+++|++|+++++.-....+ ..+ ++|++|+++++ .+..+. .....+++|+.|++++|
T Consensus 391 ~~~~~~~l~~L~~L~Ls~N~l~~~~~---------~~l~~~L~~L~Ls~N-~l~~ip-----~~~~~l~~L~~L~L~~N- 454 (520)
T 2z7x_B 391 KKGDCSWTKSLLSLNMSSNILTDTIF---------RCLPPRIKVLDLHSN-KIKSIP-----KQVVKLEALQELNVASN- 454 (520)
T ss_dssp GGCSCCCCTTCCEEECCSSCCCGGGG---------GSCCTTCCEEECCSS-CCCCCC-----GGGGGCTTCCEEECCSS-
T ss_pred ccchhccCccCCEEECcCCCCCcchh---------hhhcccCCEEECCCC-cccccc-----hhhhcCCCCCEEECCCC-
Confidence 53 6677777777777664212111 113 58888888776 344322 33457899999999998
Q ss_pred CCCCCCCC----CCCCcceEEeCC
Q 040143 213 KLSGKLPD----HLPALETLALSD 232 (232)
Q Consensus 213 ~l~~~lp~----~l~~L~~L~i~~ 232 (232)
+++ .+|. .+++|+.|++.+
T Consensus 455 ~l~-~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 455 QLK-SVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCS
T ss_pred cCC-ccCHHHhccCCcccEEECcC
Confidence 888 7775 367788887753
No 71
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.11 E-value=7.3e-10 Score=86.64 Aligned_cols=132 Identities=20% Similarity=0.239 Sum_probs=65.8
Q ss_pred cCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCCCC-ccCCCCCCccceEEEeCCCCCCCCC
Q 040143 58 LGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKFPI-WLGDPSFSNMVTLKLIGCANCTSLP 136 (232)
Q Consensus 58 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~l~ 136 (232)
+.++++|++|+++++.-... ....+..+++|++|+++++....+|. ++. .+++|++|+++++. +..+|
T Consensus 55 ~~~l~~L~~L~L~~n~l~~~--------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~-l~~~~ 123 (251)
T 3m19_A 55 FRGLTKLTWLNLDYNQLQTL--------SAGVFDDLTELGTLGLANNQLASLPLGVFD--HLTQLDKLYLGGNQ-LKSLP 123 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCC--------CTTTTTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECCSSC-CCCCC
T ss_pred hcCcccCCEEECCCCcCCcc--------CHhHhccCCcCCEEECCCCcccccChhHhc--ccCCCCEEEcCCCc-CCCcC
Confidence 55566666666655422110 01123344566666666555444432 222 35666666666653 34444
Q ss_pred C--CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCC
Q 040143 137 A--VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWC 211 (232)
Q Consensus 137 ~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c 211 (232)
. ++.+++|++|+++++ .+..++...+ ..+++|++|++.++. +..+. +.....+++|+.|++.++
T Consensus 124 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-----~~l~~L~~L~L~~N~-l~~~~----~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 124 SGVFDRLTKLKELRLNTN-QLQSIPAGAF-----DKLTNLQTLSLSTNQ-LQSVP----HGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCTTTT-----TTCTTCCEEECCSSC-CSCCC----TTTTTTCTTCCEEECCSC
T ss_pred hhHhccCCcccEEECcCC-cCCccCHHHc-----CcCcCCCEEECCCCc-CCccC----HHHHhCCCCCCEEEeeCC
Confidence 3 556666666666554 3444433211 125666666665542 22222 112234566666666665
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.10 E-value=8.3e-11 Score=95.04 Aligned_cols=195 Identities=17% Similarity=0.134 Sum_probs=119.3
Q ss_pred CCCCCCCCCCeEEecCCCCChhhh--hcccCCCceEEEcccCCCCChhhhcccccCcc-----cCCCceEEEecCCCCCC
Q 040143 6 SPLTRQTLSDFIVGRGIGSGLKDL--RNLTFLRGKLCISRLENANDSWDAREASLGDK-----KGLEELSLGWGSPFHSR 78 (232)
Q Consensus 6 ~L~~L~~L~~~~~~~~~~~~l~~L--~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~ 78 (232)
++++|++|++....... .....+ ..+++|+ .|++.+.. +... +..++.+ ++|++|+++++.-...
T Consensus 93 ~l~~L~~L~L~~n~l~~-~~~~~~~~~~l~~L~-~L~Ls~N~-l~~~----~~~~~~l~~~~~~~L~~L~L~~N~l~~~- 164 (312)
T 1wwl_A 93 GISGLQELTLENLEVTG-TAPPPLLEATGPDLN-ILNLRNVS-WATR----DAWLAELQQWLKPGLKVLSIAQAHSLNF- 164 (312)
T ss_dssp TTSCCCEEEEEEEBCBS-CCCCCSSSCCSCCCS-EEEEESCB-CSSS----SSHHHHHHTTCCTTCCEEEEESCSCCCC-
T ss_pred CcCCccEEEccCCcccc-hhHHHHHHhcCCCcc-EEEccCCC-Ccch----hHHHHHHHHhhcCCCcEEEeeCCCCccc-
Confidence 46778887655443321 122222 6677777 78876532 2221 1223333 8899999988743210
Q ss_pred chhhHHHHHhcCCCCCCCceEEEEeeCCCC---CCCccCCCCCCccceEEEeCCCCCCCCCC-----CCCCCCCceeeec
Q 040143 79 NEIAEEKVLDMLQPHTNIKKLEITRYSGRK---FPIWLGDPSFSNMVTLKLIGCANCTSLPA-----VGKLVSLKELTIR 150 (232)
Q Consensus 79 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~---~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-----l~~L~~L~~L~l~ 150 (232)
....+..+++|++|+++++.... +|..+....+++|++|++++|. +..++. +..+++|++|+++
T Consensus 165 -------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls 236 (312)
T 1wwl_A 165 -------SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLS 236 (312)
T ss_dssp -------CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECT
T ss_pred -------hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECC
Confidence 11345667899999998775432 2333311257899999999885 343332 3577899999998
Q ss_pred ccccceEeC-ccccCCCCCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC--CCCCcce
Q 040143 151 RMLVLRSIG-SEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD--HLPALET 227 (232)
Q Consensus 151 ~~~~l~~~~-~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~--~l~~L~~ 227 (232)
++. +...+ ... ...+++|++|+++++. +..+. ... +++|+.|+++++ +++ .+|. .+++|+.
T Consensus 237 ~N~-l~~~~~~~~-----~~~l~~L~~L~Ls~N~-l~~ip-----~~~--~~~L~~L~Ls~N-~l~-~~p~~~~l~~L~~ 300 (312)
T 1wwl_A 237 HNS-LRDAAGAPS-----CDWPSQLNSLNLSFTG-LKQVP-----KGL--PAKLSVLDLSYN-RLD-RNPSPDELPQVGN 300 (312)
T ss_dssp TSC-CCSSCCCSC-----CCCCTTCCEEECTTSC-CSSCC-----SSC--CSEEEEEECCSS-CCC-SCCCTTTSCEEEE
T ss_pred CCc-CCcccchhh-----hhhcCCCCEEECCCCc-cChhh-----hhc--cCCceEEECCCC-CCC-CChhHhhCCCCCE
Confidence 764 43322 111 1237899999998864 33322 222 389999999998 888 5665 4677777
Q ss_pred EEeCC
Q 040143 228 LALSD 232 (232)
Q Consensus 228 L~i~~ 232 (232)
|++.+
T Consensus 301 L~L~~ 305 (312)
T 1wwl_A 301 LSLKG 305 (312)
T ss_dssp EECTT
T ss_pred EeccC
Confidence 77653
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.10 E-value=4.4e-10 Score=89.91 Aligned_cols=172 Identities=23% Similarity=0.231 Sum_probs=117.3
Q ss_pred hhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCC
Q 040143 28 DLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGR 107 (232)
Q Consensus 28 ~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 107 (232)
.++++.+++ .+.+.+ .++..++. .+ .++++.|+++++.-.. .....+..+++|++|+++++...
T Consensus 5 ~~~~l~~l~-~l~~~~-~~l~~ip~----~~--~~~l~~L~L~~N~l~~--------~~~~~~~~l~~L~~L~L~~n~l~ 68 (290)
T 1p9a_G 5 EVSKVASHL-EVNCDK-RNLTALPP----DL--PKDTTILHLSENLLYT--------FSLATLMPYTRLTQLNLDRAELT 68 (290)
T ss_dssp EEECSTTCC-EEECTT-SCCSSCCS----CC--CTTCCEEECTTSCCSE--------EEGGGGTTCTTCCEEECTTSCCC
T ss_pred cccccCCcc-EEECCC-CCCCcCCC----CC--CCCCCEEEcCCCcCCc--------cCHHHhhcCCCCCEEECCCCccC
Confidence 455666676 676643 22322221 12 2578899887664211 01234566789999999887666
Q ss_pred CCCCccCCCCCCccceEEEeCCCCCCCCCC-CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcccc
Q 040143 108 KFPIWLGDPSFSNMVTLKLIGCANCTSLPA-VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELE 186 (232)
Q Consensus 108 ~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~ 186 (232)
.++.. ..+++|++|+++++. +..+|. +..+++|++|+++++ .+..++...+ ..+++|++|+++++ .+.
T Consensus 69 ~~~~~---~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~-----~~l~~L~~L~L~~N-~l~ 137 (290)
T 1p9a_G 69 KLQVD---GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFN-RLTSLPLGAL-----RGLGELQELYLKGN-ELK 137 (290)
T ss_dssp EEECC---SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTT-----TTCTTCCEEECTTS-CCC
T ss_pred cccCC---CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCC-cCcccCHHHH-----cCCCCCCEEECCCC-CCC
Confidence 55544 258899999999885 567887 889999999999876 5666654322 23899999999886 344
Q ss_pred cccccCcCCccCCCCcccEEeEcCCCCCCCCCCC----CCCCcceEEeCC
Q 040143 187 FWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD----HLPALETLALSD 232 (232)
Q Consensus 187 ~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~----~l~~L~~L~i~~ 232 (232)
.+. . .....+++|+.|++++| ++. .+|. .+++|+.|++.+
T Consensus 138 ~~~---~-~~~~~l~~L~~L~L~~N-~l~-~l~~~~~~~l~~L~~L~L~~ 181 (290)
T 1p9a_G 138 TLP---P-GLLTPTPKLEKLSLANN-NLT-ELPAGLLNGLENLDTLLLQE 181 (290)
T ss_dssp CCC---T-TTTTTCTTCCEEECTTS-CCS-CCCTTTTTTCTTCCEEECCS
T ss_pred ccC---h-hhcccccCCCEEECCCC-cCC-ccCHHHhcCcCCCCEEECCC
Confidence 333 1 22346899999999999 888 7764 468889888753
No 74
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.10 E-value=5.6e-10 Score=97.22 Aligned_cols=109 Identities=21% Similarity=0.169 Sum_probs=56.2
Q ss_pred CCCccceEEEeCCCCCCCCCC-CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcccccccccCc--
Q 040143 117 SFSNMVTLKLIGCANCTSLPA-VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQ-- 193 (232)
Q Consensus 117 ~l~~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~-- 193 (232)
.+++|++|++++|...+.+|. ++.+++|++|+++++ .+..++... .....+++|++|+++++.--..+..+.+
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~---~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~ 426 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVA---LMTKNMSSLETLDVSLNSLNSHAYDRTCAW 426 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHH---HTTTTCTTCCEEECTTSCCBSCCSSCCCCC
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccch---hhhcCCCCCCEEECCCCcCCCccChhhhcC
Confidence 356777777777654444444 777788888887765 344322100 0012256666666655421110110000
Q ss_pred ---------------CCccCCC-CcccEEeEcCCCCCCCCCCC---CCCCcceEEeC
Q 040143 194 ---------------TGYVEIF-PRLVELYIEWCPKLSGKLPD---HLPALETLALS 231 (232)
Q Consensus 194 ---------------~~~~~~l-p~L~~L~l~~c~~l~~~lp~---~l~~L~~L~i~ 231 (232)
......+ ++|+.|++++| +++ .+|. .+++|+.|+++
T Consensus 427 l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~-~ip~~~~~l~~L~~L~L~ 481 (562)
T 3a79_B 427 AESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIM-SIPKDVTHLQALQELNVA 481 (562)
T ss_dssp CTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCC-CCCTTTTSSCCCSEEECC
T ss_pred cccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCc-ccChhhcCCCCCCEEECC
Confidence 0001123 57777777777 666 6664 35667777664
No 75
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.09 E-value=6.1e-10 Score=91.38 Aligned_cols=178 Identities=16% Similarity=0.075 Sum_probs=83.8
Q ss_pred hhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCC
Q 040143 28 DLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGR 107 (232)
Q Consensus 28 ~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 107 (232)
.+.+|++|+ .|++.+......++. ..+.+++++..+.+..+...... ....+..+++|++|++.++...
T Consensus 49 ~f~~l~~L~-~L~Ls~N~i~~~i~~---~~f~~L~~l~~~l~~~~N~l~~l-------~~~~f~~l~~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 49 AFSGFGDLE-KIEISQNDVLEVIEA---DVFSNLPKLHEIRIEKANNLLYI-------NPEAFQNLPNLQYLLISNTGIK 117 (350)
T ss_dssp SSTTCTTCC-EEEEECCTTCCEECT---TSBCSCTTCCEEEEEEETTCCEE-------CTTSBCCCTTCCEEEEEEECCS
T ss_pred HHcCCCCCC-EEECcCCCCCCccCh---hHhhcchhhhhhhcccCCccccc-------Cchhhhhccccccccccccccc
Confidence 356667777 777765332221111 12445555554433322111000 0122344567777777766555
Q ss_pred CCCCccCCCCCCccceEEEeCCCCCCCCCC--CCCC-CCCceeeecc-----------------------cccceEeCcc
Q 040143 108 KFPIWLGDPSFSNMVTLKLIGCANCTSLPA--VGKL-VSLKELTIRR-----------------------MLVLRSIGSE 161 (232)
Q Consensus 108 ~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--l~~L-~~L~~L~l~~-----------------------~~~l~~~~~~ 161 (232)
.+|..... ....+..+++.++..+..++. +..+ ..++.|++++ ++.++.++..
T Consensus 118 ~~~~~~~~-~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~ 196 (350)
T 4ay9_X 118 HLPDVHKI-HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPND 196 (350)
T ss_dssp SCCCCTTC-CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTT
T ss_pred cCCchhhc-ccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHH
Confidence 54433211 123444555555444444443 3333 2344555543 3333333322
Q ss_pred ccCCCCCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC--CCCCcceEEeC
Q 040143 162 ICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD--HLPALETLALS 231 (232)
Q Consensus 162 ~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~--~l~~L~~L~i~ 231 (232)
.+ ..+++|++|+++++ .++.+. .+.|.+|+.|.+.+|.+++ .+|. .+++|+.+++.
T Consensus 197 ~f-----~~l~~L~~LdLs~N-~l~~lp-------~~~~~~L~~L~~l~~~~l~-~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 197 VF-----HGASGPVILDISRT-RIHSLP-------SYGLENLKKLRARSTYNLK-KLPTLEKLVALMEASLT 254 (350)
T ss_dssp TT-----TTEECCSEEECTTS-CCCCCC-------SSSCTTCCEEECTTCTTCC-CCCCTTTCCSCCEEECS
T ss_pred Hh-----ccCcccchhhcCCC-CcCccC-------hhhhccchHhhhccCCCcC-cCCCchhCcChhhCcCC
Confidence 21 12566666666554 233322 1336667777777776666 6664 45666666543
No 76
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.09 E-value=4.9e-12 Score=103.00 Aligned_cols=180 Identities=18% Similarity=0.179 Sum_probs=107.5
Q ss_pred hhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeC-CC
Q 040143 29 LRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYS-GR 107 (232)
Q Consensus 29 L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~ 107 (232)
+.++++|+ .|++.+.. +. .......+..+++|++|+++++... ......+..+++|++|++.++. ..
T Consensus 89 ~~~~~~L~-~L~L~~~~-l~--~~~~~~~~~~~~~L~~L~L~~~~l~--------~~~~~~l~~~~~L~~L~L~~~~~l~ 156 (336)
T 2ast_B 89 HFSPFRVQ-HMDLSNSV-IE--VSTLHGILSQCSKLQNLSLEGLRLS--------DPIVNTLAKNSNLVRLNLSGCSGFS 156 (336)
T ss_dssp CCCCBCCC-EEECTTCE-EC--HHHHHHHHTTBCCCSEEECTTCBCC--------HHHHHHHTTCTTCSEEECTTCBSCC
T ss_pred hccCCCCC-EEEccCCC-cC--HHHHHHHHhhCCCCCEEeCcCcccC--------HHHHHHHhcCCCCCEEECCCCCCCC
Confidence 44566676 77765432 21 1113334667788888888765321 1233444556889999888763 22
Q ss_pred C--CCCccCCCCCCccceEEEeCCCCCCC--CCC-CCCCC-CCceeeecccc-cce--EeCccccCCCCCccCCccceEe
Q 040143 108 K--FPIWLGDPSFSNMVTLKLIGCANCTS--LPA-VGKLV-SLKELTIRRML-VLR--SIGSEICGKDCSTPFQSLETLC 178 (232)
Q Consensus 108 ~--~p~~~~~~~l~~L~~L~l~~c~~~~~--l~~-l~~L~-~L~~L~l~~~~-~l~--~~~~~~~~~~~~~~~p~L~~L~ 178 (232)
. ++..+. .+++|++|++++|..+.. ++. ++.++ +|++|++++|. .+. .++..+ ..+|+|++|+
T Consensus 157 ~~~l~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~------~~~~~L~~L~ 228 (336)
T 2ast_B 157 EFALQTLLS--SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV------RRCPNLVHLD 228 (336)
T ss_dssp HHHHHHHHH--HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH------HHCTTCSEEE
T ss_pred HHHHHHHHh--cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH------hhCCCCCEEe
Confidence 1 333333 367888998888844443 344 66788 88888888874 232 122111 2378888888
Q ss_pred ccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCC-C--CCCCCCcceEEeCC
Q 040143 179 FSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGK-L--PDHLPALETLALSD 232 (232)
Q Consensus 179 l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~-l--p~~l~~L~~L~i~~ 232 (232)
+++|..+.... . .....+++|+.|++++|..+... + -..+++|+.|++.+
T Consensus 229 l~~~~~l~~~~---~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 229 LSDSVMLKNDC---F-QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp CTTCTTCCGGG---G-GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred CCCCCcCCHHH---H-HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 88876444322 1 23456788999999888644311 0 01477888887753
No 77
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.07 E-value=2.4e-10 Score=98.98 Aligned_cols=173 Identities=18% Similarity=0.209 Sum_probs=119.7
Q ss_pred cCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCCCC-
Q 040143 33 TFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKFPI- 111 (232)
Q Consensus 33 ~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~- 111 (232)
++++ .+++.+.. +. ......++++++|++|+++++.-.. .....+..+++|++|+++++.....|.
T Consensus 26 ~~L~-~L~Ls~n~-l~---~~~~~~~~~l~~L~~L~Ls~n~i~~--------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 92 (549)
T 2z81_A 26 AAMK-SLDLSFNK-IT---YIGHGDLRACANLQVLILKSSRINT--------IEGDAFYSLGSLEHLDLSDNHLSSLSSS 92 (549)
T ss_dssp TTCC-EEECCSSC-CC---EECSSTTSSCTTCCEEECTTSCCCE--------ECTTTTTTCTTCCEEECTTSCCCSCCHH
T ss_pred CCcc-EEECcCCc-cC---ccChhhhhcCCcccEEECCCCCcCc--------cChhhccccccCCEEECCCCccCccCHH
Confidence 4577 77776532 22 2222457888999999998764221 011345667899999999887766654
Q ss_pred ccCCCCCCccceEEEeCCCCCC-CCCC-CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCccccccc
Q 040143 112 WLGDPSFSNMVTLKLIGCANCT-SLPA-VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWD 189 (232)
Q Consensus 112 ~~~~~~l~~L~~L~l~~c~~~~-~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~ 189 (232)
++. .+++|++|++++|.... .+|. ++.+++|++|+++++..+..++...+ ..+++|++|++.++. +....
T Consensus 93 ~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-----~~l~~L~~L~L~~n~-l~~~~ 164 (549)
T 2z81_A 93 WFG--PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF-----AGLTSLNELEIKALS-LRNYQ 164 (549)
T ss_dssp HHT--TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT-----TTCCEEEEEEEEETT-CCEEC
T ss_pred Hhc--cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhh-----hcccccCeeeccCCc-ccccC
Confidence 354 58999999999986443 3444 89999999999998876777764322 238999999998764 33222
Q ss_pred ccCcCCccCCCCcccEEeEcCCCCCCCCCCC----CCCCcceEEeCC
Q 040143 190 TGNQTGYVEIFPRLVELYIEWCPKLSGKLPD----HLPALETLALSD 232 (232)
Q Consensus 190 ~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~----~l~~L~~L~i~~ 232 (232)
+...+.+++|+.|++..+ ... .+|. .+++|+.|++.+
T Consensus 165 ----~~~l~~l~~L~~L~l~~n-~~~-~~~~~~~~~l~~L~~L~L~~ 205 (549)
T 2z81_A 165 ----SQSLKSIRDIHHLTLHLS-ESA-FLLEIFADILSSVRYLELRD 205 (549)
T ss_dssp ----TTTTTTCSEEEEEEEECS-BST-THHHHHHHSTTTBSEEEEES
T ss_pred ----hhhhhccccCceEecccC-ccc-ccchhhHhhcccccEEEccC
Confidence 234567899999999988 454 5543 478899988753
No 78
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.06 E-value=1.7e-09 Score=98.59 Aligned_cols=29 Identities=28% Similarity=0.284 Sum_probs=13.6
Q ss_pred CcccEEeEcCCCCCCCCCCCCCCCcceEEe
Q 040143 201 PRLVELYIEWCPKLSGKLPDHLPALETLAL 230 (232)
Q Consensus 201 p~L~~L~l~~c~~l~~~lp~~l~~L~~L~i 230 (232)
++|+.|+++++ ++.+..|..+++|+.|++
T Consensus 526 ~~L~~L~Ls~N-~l~~~~~~~~~~L~~l~l 554 (844)
T 3j0a_A 526 ANLEILDISRN-QLLAPNPDVFVSLSVLDI 554 (844)
T ss_dssp SCCCEEEEEEE-CCCCCCSCCCSSCCEEEE
T ss_pred ccccEEECCCC-cCCCCChhHhCCcCEEEe
Confidence 44555555544 444333444445555544
No 79
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.05 E-value=1.6e-09 Score=88.10 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=19.0
Q ss_pred hhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEec
Q 040143 28 DLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWG 72 (232)
Q Consensus 28 ~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 72 (232)
.+.++++|+ .|.+.+.. +. ......++++++|++|+++++
T Consensus 73 ~~~~l~~L~-~L~L~~n~-l~---~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 73 DFKGLQHLY-ALVLVNNK-IS---KIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp TTTTCTTCC-EEECCSSC-CC---EECGGGSTTCTTCCEEECCSS
T ss_pred HhhCCCCCc-EEECCCCc-cC---ccCHhHhhCcCCCCEEECCCC
Confidence 345555555 55554321 11 111223555666666666554
No 80
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.04 E-value=3.8e-09 Score=89.73 Aligned_cols=57 Identities=16% Similarity=0.085 Sum_probs=35.9
Q ss_pred CCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCCCCCCCCCceeeeccc
Q 040143 90 LQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPAVGKLVSLKELTIRRM 152 (232)
Q Consensus 90 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~l~~L~~L~~L~l~~~ 152 (232)
+..+++|++|+++++....+|.. .++|++|++++|. +..+|.++.+++|++|+++++
T Consensus 191 ~~~l~~L~~L~l~~N~l~~l~~~-----~~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 191 LQNLPFLTAIYADNNSLKKLPDL-----PLSLESIVAGNNI-LEELPELQNLPFLTTIYADNN 247 (454)
T ss_dssp CTTCTTCCEEECCSSCCSSCCCC-----CTTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSS
T ss_pred ccCCCCCCEEECCCCcCCcCCCC-----cCcccEEECcCCc-CCcccccCCCCCCCEEECCCC
Confidence 44456666666665554444432 2467777777764 346777777788888887665
No 81
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.03 E-value=1.3e-10 Score=83.57 Aligned_cols=124 Identities=21% Similarity=0.239 Sum_probs=89.6
Q ss_pred CCCCceEEEEeeCCC--CCCCccCCCCCCccceEEEeCCCCCCCCCCCCCCCCCceeeecccccceE-eCccccCCCCCc
Q 040143 93 HTNIKKLEITRYSGR--KFPIWLGDPSFSNMVTLKLIGCANCTSLPAVGKLVSLKELTIRRMLVLRS-IGSEICGKDCST 169 (232)
Q Consensus 93 ~~~L~~L~l~~~~~~--~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~l~~L~~L~~L~l~~~~~l~~-~~~~~~~~~~~~ 169 (232)
+++++.|+++++... .+|..+. .+++|++|++++|. +..++.++.+++|++|+++++. +.. ++..+ .
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~------~ 85 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTD--EFEELEFLSTINVG-LTSIANLPKLNKLKKLELSDNR-VSGGLEVLA------E 85 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCT--TCTTCCEEECTTSC-CCCCTTCCCCTTCCEEECCSSC-CCSCTHHHH------H
T ss_pred CccCeEEEccCCcCChhHHHHHHh--hcCCCcEEECcCCC-CCCchhhhcCCCCCEEECCCCc-ccchHHHHh------h
Confidence 478899998877665 5676655 58899999999885 5566669999999999998874 433 33222 2
Q ss_pred cCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC-------CCCCcceEEeCC
Q 040143 170 PFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD-------HLPALETLALSD 232 (232)
Q Consensus 170 ~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~-------~l~~L~~L~i~~ 232 (232)
.+++|++|+++++. +..+. .+...+.+|+|+.|++++| ++. .+|. .+++|+.|++++
T Consensus 86 ~l~~L~~L~ls~N~-i~~~~---~~~~~~~l~~L~~L~l~~N-~l~-~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 86 KCPNLTHLNLSGNK-IKDLS---TIEPLKKLENLKSLDLFNC-EVT-NLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HCTTCCEEECTTSC-CCSHH---HHGGGGGCTTCCEEECTTC-GGG-GSTTHHHHHHHHCTTCCEETTBC
T ss_pred hCCCCCEEECCCCc-CCChH---HHHHHhhCCCCCEEeCcCC-ccc-chHHHHHHHHHHCCCcccccCCC
Confidence 38999999998864 44322 1124456999999999999 777 5543 378899887764
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.03 E-value=1.9e-10 Score=98.63 Aligned_cols=109 Identities=12% Similarity=0.019 Sum_probs=77.1
Q ss_pred CCCCCCceEEEEeeCCCC-CCCccCCCCCCccceEEEeCCCCCCCCCCCCCCCCCceeeecccccceEeCccccCCCCCc
Q 040143 91 QPHTNIKKLEITRYSGRK-FPIWLGDPSFSNMVTLKLIGCANCTSLPAVGKLVSLKELTIRRMLVLRSIGSEICGKDCST 169 (232)
Q Consensus 91 ~~~~~L~~L~l~~~~~~~-~p~~~~~~~l~~L~~L~l~~c~~~~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 169 (232)
..+++|++|+++++.... .|.++.. .+++|++|++++|. +..+|....+++|++|+++++ .+..++..+.
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~~~~l~~-~l~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~------ 211 (487)
T 3oja_A 141 GCRSRVQYLDLKLNEIDTVNFAELAA-SSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQ------ 211 (487)
T ss_dssp GGGSSEEEEECTTSCCCEEEGGGGGG-GTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSS-CCCEECGGGG------
T ss_pred cCCCCCCEEECCCCCCCCcChHHHhh-hCCcccEEecCCCc-cccccccccCCCCCEEECCCC-CCCCCCHhHc------
Confidence 345788888887765544 3444321 36889999998876 456666667999999999876 5666765543
Q ss_pred cCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCC
Q 040143 170 PFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKL 214 (232)
Q Consensus 170 ~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l 214 (232)
.+++|+.|+++++. +..++ ...+.+++|+.|++++|+-.
T Consensus 212 ~l~~L~~L~Ls~N~-l~~lp-----~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 212 SAAGVTWISLRNNK-LVLIE-----KALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp GGTTCSEEECTTSC-CCEEC-----TTCCCCTTCCEEECTTCCBC
T ss_pred CCCCccEEEecCCc-Ccccc-----hhhccCCCCCEEEcCCCCCc
Confidence 38999999998863 44333 34566899999999998433
No 83
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.03 E-value=2.9e-09 Score=82.17 Aligned_cols=128 Identities=20% Similarity=0.184 Sum_probs=81.6
Q ss_pred cCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC--CC
Q 040143 62 KGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA--VG 139 (232)
Q Consensus 62 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--l~ 139 (232)
++|++|+++++.-... ....+..+++|++|+++++....+|.... ..+++|++|++++|. +..++. ++
T Consensus 40 ~~L~~L~Ls~n~i~~~--------~~~~~~~l~~L~~L~L~~N~l~~i~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~ 109 (229)
T 3e6j_A 40 TNAQILYLHDNQITKL--------EPGVFDSLINLKELYLGSNQLGALPVGVF-DSLTQLTVLDLGTNQ-LTVLPSAVFD 109 (229)
T ss_dssp TTCSEEECCSSCCCCC--------CTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred CCCCEEEcCCCccCcc--------CHHHhhCccCCcEEECCCCCCCCcChhhc-ccCCCcCEEECCCCc-CCccChhHhC
Confidence 6788888877643210 11234556788888888776666654321 147788888888774 455654 67
Q ss_pred CCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCC
Q 040143 140 KLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWC 211 (232)
Q Consensus 140 ~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c 211 (232)
.+++|++|+++++ .+..++..+. .+++|++|+++++ .+..+. . .....+++|+.|++.++
T Consensus 110 ~l~~L~~L~Ls~N-~l~~lp~~~~------~l~~L~~L~L~~N-~l~~~~---~-~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 110 RLVHLKELFMCCN-KLTELPRGIE------RLTHLTHLALDQN-QLKSIP---H-GAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp TCTTCCEEECCSS-CCCSCCTTGG------GCTTCSEEECCSS-CCCCCC---T-TTTTTCTTCCEEECTTS
T ss_pred cchhhCeEeccCC-cccccCcccc------cCCCCCEEECCCC-cCCccC---H-HHHhCCCCCCEEEeeCC
Confidence 8888888888765 4556654432 3788888888765 344333 1 22345788888888776
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.03 E-value=4.1e-09 Score=84.91 Aligned_cols=62 Identities=13% Similarity=0.132 Sum_probs=29.8
Q ss_pred CCCCCCceEEEEeeCCCCCCCcc---CCCCCCccceEEEeCCCCCCCCC-C-CCCCCCCceeeecccc
Q 040143 91 QPHTNIKKLEITRYSGRKFPIWL---GDPSFSNMVTLKLIGCANCTSLP-A-VGKLVSLKELTIRRML 153 (232)
Q Consensus 91 ~~~~~L~~L~l~~~~~~~~p~~~---~~~~l~~L~~L~l~~c~~~~~l~-~-l~~L~~L~~L~l~~~~ 153 (232)
..+++|++|+++++.......++ ....+++|++|++++|.. ..++ . ++.+++|++|+++++.
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~ 180 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS-PAFSCEQVRAFPALTSLDLSDNP 180 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS-CCCCTTSCCCCTTCCEEECCSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc-chhhHHHhccCCCCCEEECCCCC
Confidence 33456666666655443311110 001245666666666543 2332 2 5566666666665553
No 85
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.02 E-value=1.5e-10 Score=93.80 Aligned_cols=184 Identities=16% Similarity=0.056 Sum_probs=99.4
Q ss_pred CCCCCCCCCeEEecCCCCChhhhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHH
Q 040143 7 PLTRQTLSDFIVGRGIGSGLKDLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKV 86 (232)
Q Consensus 7 L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 86 (232)
+++|++|++..... .......+.++++|+ .|.+.+.. +.. . ..+..+++|++|+++++.
T Consensus 33 ~~~L~~L~L~~n~l-~~~~~~~~~~l~~L~-~L~Ls~n~-l~~---~--~~~~~l~~L~~L~Ls~n~------------- 91 (317)
T 3o53_A 33 AWNVKELDLSGNPL-SQISAADLAPFTKLE-LLNLSSNV-LYE---T--LDLESLSTLRTLDLNNNY------------- 91 (317)
T ss_dssp GGGCSEEECTTSCC-CCCCHHHHTTCTTCC-EEECTTSC-CEE---E--EEETTCTTCCEEECCSSE-------------
T ss_pred CCCCCEEECcCCcc-CcCCHHHhhCCCcCC-EEECCCCc-CCc---c--hhhhhcCCCCEEECcCCc-------------
Confidence 34566664332111 122335677788887 78876432 211 1 126677788888886652
Q ss_pred HhcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC--CCCCCCCceeeecccccceEeCc-ccc
Q 040143 87 LDMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRMLVLRSIGS-EIC 163 (232)
Q Consensus 87 ~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~~~l~~~~~-~~~ 163 (232)
+..+.+.++|+.|+++++....++.. .+++|++|++++|.. ..++. ++.+++|++|+++++. +..++. .+.
T Consensus 92 l~~l~~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~ 165 (317)
T 3o53_A 92 VQELLVGPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELA 165 (317)
T ss_dssp EEEEEECTTCCEEECCSSCCSEEEEC----CCSSCEEEECCSSCC-CSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGG
T ss_pred cccccCCCCcCEEECCCCccCCcCcc----ccCCCCEEECCCCCC-CCccchhhhccCCCCEEECCCCC-CCcccHHHHh
Confidence 11222346777777766554443321 356677777776643 33332 6667777777776653 333322 221
Q ss_pred CCCCCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC---CCCCcceEEeC
Q 040143 164 GKDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD---HLPALETLALS 231 (232)
Q Consensus 164 ~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~---~l~~L~~L~i~ 231 (232)
..+++|++|+++++. +..+. ....+++|+.|++++| ++. .+|. .+++|+.|+++
T Consensus 166 -----~~l~~L~~L~L~~N~-l~~~~------~~~~l~~L~~L~Ls~N-~l~-~l~~~~~~l~~L~~L~L~ 222 (317)
T 3o53_A 166 -----ASSDTLEHLNLQYNF-IYDVK------GQVVFAKLKTLDLSSN-KLA-FMGPEFQSAAGVTWISLR 222 (317)
T ss_dssp -----GGTTTCCEEECTTSC-CCEEE------CCCCCTTCCEEECCSS-CCC-EECGGGGGGTTCSEEECT
T ss_pred -----hccCcCCEEECCCCc-Ccccc------cccccccCCEEECCCC-cCC-cchhhhcccCcccEEECc
Confidence 125677777776653 33222 1223677777777777 666 4443 35666666654
No 86
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.02 E-value=7.9e-10 Score=83.91 Aligned_cols=138 Identities=21% Similarity=0.243 Sum_probs=81.8
Q ss_pred cCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC
Q 040143 58 LGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA 137 (232)
Q Consensus 58 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~ 137 (232)
++++++|++|+++++.-... ....+..+++|++|+++++....+|.... ..+++|++|+++++. +..++.
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~ 117 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQSL--------PNGVFNKLTSLTYLNLSTNQLQSLPNGVF-DKLTQLKELALNTNQ-LQSLPD 117 (208)
T ss_dssp TTTCTTCSEEECCSSCCCCC--------CTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CCCCCT
T ss_pred hcccccCcEEECCCCccCcc--------ChhhcCCCCCcCEEECCCCcCCccCHhHh-cCccCCCEEEcCCCc-CcccCH
Confidence 56677788888866532110 01123445778888887766555554321 146788888887764 445554
Q ss_pred --CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCC
Q 040143 138 --VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLS 215 (232)
Q Consensus 138 --l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~ 215 (232)
++.+++|++|+++++ .+..++...+ ..+++|++|++.+++ | .+.+|+|+.|.++.+ ++.
T Consensus 118 ~~~~~l~~L~~L~l~~N-~l~~~~~~~~-----~~l~~L~~L~l~~N~----~--------~~~~~~l~~L~~~~n-~~~ 178 (208)
T 2o6s_A 118 GVFDKLTQLKDLRLYQN-QLKSVPDGVF-----DRLTSLQYIWLHDNP----W--------DCTCPGIRYLSEWIN-KHS 178 (208)
T ss_dssp TTTTTCTTCCEEECCSS-CCSCCCTTTT-----TTCTTCCEEECCSCC----B--------CCCTTTTHHHHHHHH-HCT
T ss_pred hHhccCCcCCEEECCCC-ccceeCHHHh-----ccCCCccEEEecCCC----e--------ecCCCCHHHHHHHHH-hCC
Confidence 677888888888765 3444443322 237778888877653 1 133566777776666 555
Q ss_pred CCCCCCCCC
Q 040143 216 GKLPDHLPA 224 (232)
Q Consensus 216 ~~lp~~l~~ 224 (232)
|.+|..+..
T Consensus 179 g~ip~~~~~ 187 (208)
T 2o6s_A 179 GVVRNSAGS 187 (208)
T ss_dssp TTBBCTTSS
T ss_pred ceeeccCcc
Confidence 566654433
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.01 E-value=3.3e-10 Score=89.73 Aligned_cols=180 Identities=13% Similarity=0.048 Sum_probs=114.0
Q ss_pred CCCCCCCCCCCCCeEEecCCCCChhhhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhh
Q 040143 3 MERSPLTRQTLSDFIVGRGIGSGLKDLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIA 82 (232)
Q Consensus 3 ~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 82 (232)
.++++++|++|++...... ......++++++|+ .|.+.+.. +. ......+.++++|++|+++++.....
T Consensus 47 ~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~-~L~L~~n~-l~---~~~~~~~~~l~~L~~L~l~~n~l~~~----- 115 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLS-TLILTGNP-IQ---SLALGAFSGLSSLQKLVAVETNLASL----- 115 (276)
T ss_dssp TTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCC-EEECTTCC-CC---EECTTTTTTCTTCCEEECTTSCCCCS-----
T ss_pred HhccccCCcEEECCCCcCC-ccCHHHccCCcCCC-EEECCCCc-cC---ccChhhhcCCccccEEECCCCCcccc-----
Confidence 3556667776643321111 11123467777888 88876432 21 11223477889999999976643210
Q ss_pred HHHHHhcCCCCCCCceEEEEeeCCCC--CCCccCCCCCCccceEEEeCCCCCCCCCC--CCCCCCCc----eeeeccccc
Q 040143 83 EEKVLDMLQPHTNIKKLEITRYSGRK--FPIWLGDPSFSNMVTLKLIGCANCTSLPA--VGKLVSLK----ELTIRRMLV 154 (232)
Q Consensus 83 ~~~~~~~l~~~~~L~~L~l~~~~~~~--~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--l~~L~~L~----~L~l~~~~~ 154 (232)
....+..+++|++|+++++.... +|.++. .+++|++|++++|.. ..++. ++.+++|+ +|+++++ .
T Consensus 116 ---~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~--~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~l~l~L~ls~n-~ 188 (276)
T 2z62_A 116 ---ENFPIGHLKTLKELNVAHNLIQSFKLPEYFS--NLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLN-P 188 (276)
T ss_dssp ---TTCCCTTCTTCCEEECCSSCCCCCCCCGGGG--GCTTCCEEECCSSCC-CEECGGGGHHHHTCTTCCEEEECCSS-C
T ss_pred ---CchhcccCCCCCEEECcCCccceecCchhhc--cCCCCCEEECCCCCC-CcCCHHHhhhhhhccccceeeecCCC-c
Confidence 01125567899999998876655 577766 588999999999864 44442 55556665 7888765 4
Q ss_pred ceEeCccccCCCCCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCC
Q 040143 155 LRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWC 211 (232)
Q Consensus 155 l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c 211 (232)
+..++...+. .++|++|+++++. +..+. . .....+++|+.|+++++
T Consensus 189 l~~~~~~~~~------~~~L~~L~L~~n~-l~~~~---~-~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 189 MNFIQPGAFK------EIRLKELALDTNQ-LKSVP---D-GIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CCEECTTSSC------SCCEEEEECCSSC-CSCCC---T-TTTTTCCSCCEEECCSS
T ss_pred ccccCccccC------CCcccEEECCCCc-eeecC---H-hHhcccccccEEEccCC
Confidence 6666544333 5689999998764 44433 1 22356899999999966
No 88
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.00 E-value=1.7e-09 Score=85.30 Aligned_cols=151 Identities=16% Similarity=0.065 Sum_probs=103.6
Q ss_pred hhhhcccCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCC
Q 040143 27 KDLRNLTFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSG 106 (232)
Q Consensus 27 ~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 106 (232)
..+..+.+|+ .|.+.+. .+.... .+..+++|++|+++++.-.. +. .+..+++|++|+++++..
T Consensus 35 ~~~~~l~~L~-~L~l~~n-~i~~l~-----~l~~l~~L~~L~L~~N~i~~---------~~-~l~~l~~L~~L~L~~N~l 97 (263)
T 1xeu_A 35 VSQKELSGVQ-NFNGDNS-NIQSLA-----GMQFFTNLKELHLSHNQISD---------LS-PLKDLTKLEELSVNRNRL 97 (263)
T ss_dssp ECHHHHTTCS-EEECTTS-CCCCCT-----TGGGCTTCCEEECCSSCCCC---------CG-GGTTCSSCCEEECCSSCC
T ss_pred cchhhcCcCc-EEECcCC-Ccccch-----HHhhCCCCCEEECCCCccCC---------Ch-hhccCCCCCEEECCCCcc
Confidence 3566677777 7887653 333322 36677899999998764321 11 155678999999988877
Q ss_pred CCCCCccCCCCCCccceEEEeCCCCCCCCCCCCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcccc
Q 040143 107 RKFPIWLGDPSFSNMVTLKLIGCANCTSLPAVGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELE 186 (232)
Q Consensus 107 ~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~ 186 (232)
..+|... .++|++|++++|. +..++.++.+++|++|+++++ .++.++ .+ ..+++|++|+++++. +.
T Consensus 98 ~~l~~~~----~~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~Ls~N-~i~~~~-~l------~~l~~L~~L~L~~N~-i~ 163 (263)
T 1xeu_A 98 KNLNGIP----SACLSRLFLDNNE-LRDTDSLIHLKNLEILSIRNN-KLKSIV-ML------GFLSKLEVLDLHGNE-IT 163 (263)
T ss_dssp SCCTTCC----CSSCCEEECCSSC-CSBSGGGTTCTTCCEEECTTS-CCCBCG-GG------GGCTTCCEEECTTSC-CC
T ss_pred CCcCccc----cCcccEEEccCCc-cCCChhhcCcccccEEECCCC-cCCCCh-HH------ccCCCCCEEECCCCc-Cc
Confidence 6666532 2789999999885 566777889999999999876 355543 22 348899999998763 33
Q ss_pred cccccCcCCccCCCCcccEEeEcCCCCCC
Q 040143 187 FWDTGNQTGYVEIFPRLVELYIEWCPKLS 215 (232)
Q Consensus 187 ~~~~~~~~~~~~~lp~L~~L~l~~c~~l~ 215 (232)
++. ....+++|+.|+++++ ++.
T Consensus 164 ~~~------~l~~l~~L~~L~l~~N-~~~ 185 (263)
T 1xeu_A 164 NTG------GLTRLKKVNWIDLTGQ-KCV 185 (263)
T ss_dssp BCT------TSTTCCCCCEEEEEEE-EEE
T ss_pred chH------HhccCCCCCEEeCCCC-ccc
Confidence 222 3356899999999887 444
No 89
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.99 E-value=1.8e-09 Score=95.95 Aligned_cols=35 Identities=14% Similarity=0.033 Sum_probs=17.1
Q ss_pred CCccceEEEeCCCCCCCCCC--CCCCCCCceeeeccc
Q 040143 118 FSNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRM 152 (232)
Q Consensus 118 l~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~ 152 (232)
+++|++|++++|.....+|. ++.+++|++|+++++
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCC
Confidence 44555555555543333332 445555555555544
No 90
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.98 E-value=1.2e-09 Score=86.09 Aligned_cols=142 Identities=15% Similarity=0.189 Sum_probs=104.2
Q ss_pred cCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC
Q 040143 58 LGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA 137 (232)
Q Consensus 58 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~ 137 (232)
+..+++|++|+++++.-.. ++.+..+++|++|+++++....+|. +. .+++|++|++++|. +..+|.
T Consensus 37 ~~~l~~L~~L~l~~n~i~~----------l~~l~~l~~L~~L~L~~N~i~~~~~-l~--~l~~L~~L~L~~N~-l~~l~~ 102 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQS----------LAGMQFFTNLKELHLSHNQISDLSP-LK--DLTKLEELSVNRNR-LKNLNG 102 (263)
T ss_dssp HHHHTTCSEEECTTSCCCC----------CTTGGGCTTCCEEECCSSCCCCCGG-GT--TCSSCCEEECCSSC-CSCCTT
T ss_pred hhhcCcCcEEECcCCCccc----------chHHhhCCCCCEEECCCCccCCChh-hc--cCCCCCEEECCCCc-cCCcCc
Confidence 5667899999997763221 1234456899999999887777766 44 58999999999985 566777
Q ss_pred CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCC
Q 040143 138 VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGK 217 (232)
Q Consensus 138 l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~ 217 (232)
+.. ++|++|+++++ .+..++ .+ ..+++|+.|+++++. +.... ....+++|+.|++++| ++. .
T Consensus 103 ~~~-~~L~~L~L~~N-~l~~~~-~l------~~l~~L~~L~Ls~N~-i~~~~------~l~~l~~L~~L~L~~N-~i~-~ 164 (263)
T 1xeu_A 103 IPS-ACLSRLFLDNN-ELRDTD-SL------IHLKNLEILSIRNNK-LKSIV------MLGFLSKLEVLDLHGN-EIT-N 164 (263)
T ss_dssp CCC-SSCCEEECCSS-CCSBSG-GG------TTCTTCCEEECTTSC-CCBCG------GGGGCTTCCEEECTTS-CCC-B
T ss_pred ccc-CcccEEEccCC-ccCCCh-hh------cCcccccEEECCCCc-CCCCh------HHccCCCCCEEECCCC-cCc-c
Confidence 666 99999999887 455543 22 348999999998763 44322 3456999999999999 777 4
Q ss_pred CCC--CCCCcceEEeC
Q 040143 218 LPD--HLPALETLALS 231 (232)
Q Consensus 218 lp~--~l~~L~~L~i~ 231 (232)
++. .+++|+.|++.
T Consensus 165 ~~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 165 TGGLTRLKKVNWIDLT 180 (263)
T ss_dssp CTTSTTCCCCCEEEEE
T ss_pred hHHhccCCCCCEEeCC
Confidence 442 57888888775
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.96 E-value=5.2e-09 Score=81.77 Aligned_cols=126 Identities=21% Similarity=0.275 Sum_probs=66.3
Q ss_pred CCCCCCCceEEEEeeCCCCCCC-ccCCCCCCccceEEEeCCCCCCCCCC--CCCCCCCceeeecccccceEeCccccCCC
Q 040143 90 LQPHTNIKKLEITRYSGRKFPI-WLGDPSFSNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRMLVLRSIGSEICGKD 166 (232)
Q Consensus 90 l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~ 166 (232)
+..+++|++|+++++....++. .+. .+++|++|+++++. +..++. ++.+++|++|+++++ .+..++...+.
T Consensus 55 ~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~-- 128 (251)
T 3m19_A 55 FRGLTKLTWLNLDYNQLQTLSAGVFD--DLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFD-- 128 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT--
T ss_pred hcCcccCCEEECCCCcCCccCHhHhc--cCCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCC-cCCCcChhHhc--
Confidence 3445666666666554444332 222 35666777666654 334442 566667777776654 34444433221
Q ss_pred CCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC----CCCCcceEEeC
Q 040143 167 CSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD----HLPALETLALS 231 (232)
Q Consensus 167 ~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~----~l~~L~~L~i~ 231 (232)
.+++|++|+++++ .+..+. . ...+.+++|+.|++++| ++. .+|. .+++|+.|++.
T Consensus 129 ---~l~~L~~L~Ls~N-~l~~~~---~-~~~~~l~~L~~L~L~~N-~l~-~~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 129 ---RLTKLKELRLNTN-QLQSIP---A-GAFDKLTNLQTLSLSTN-QLQ-SVPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp ---TCTTCCEEECCSS-CCCCCC---T-TTTTTCTTCCEEECCSS-CCS-CCCTTTTTTCTTCCEEECC
T ss_pred ---cCCcccEEECcCC-cCCccC---H-HHcCcCcCCCEEECCCC-cCC-ccCHHHHhCCCCCCEEEee
Confidence 2666666666654 333322 1 12344666777777666 555 3332 34566666554
No 92
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.95 E-value=6e-09 Score=79.91 Aligned_cols=128 Identities=15% Similarity=0.213 Sum_probs=72.8
Q ss_pred cCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCC-CCccCCCCCCccceEEEeCCCCCCCCCC--C
Q 040143 62 KGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKF-PIWLGDPSFSNMVTLKLIGCANCTSLPA--V 138 (232)
Q Consensus 62 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~l~~--l 138 (232)
++++.|+++++.-.. . ....+..+++|++|+++++....+ |..+. .+++|++|+++++. +..+|. +
T Consensus 32 ~~l~~L~l~~n~i~~--i------~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~--~l~~L~~L~Ls~N~-l~~l~~~~f 100 (220)
T 2v9t_B 32 ETITEIRLEQNTIKV--I------PPGAFSPYKKLRRIDLSNNQISELAPDAFQ--GLRSLNSLVLYGNK-ITELPKSLF 100 (220)
T ss_dssp TTCCEEECCSSCCCE--E------CTTSSTTCTTCCEEECCSSCCCEECTTTTT--TCSSCCEEECCSSC-CCCCCTTTT
T ss_pred cCCCEEECCCCcCCC--c------CHhHhhCCCCCCEEECCCCcCCCcCHHHhh--CCcCCCEEECCCCc-CCccCHhHc
Confidence 467777776653210 0 011344556777777776655443 44444 46777777777764 445655 5
Q ss_pred CCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCC
Q 040143 139 GKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWC 211 (232)
Q Consensus 139 ~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c 211 (232)
..+++|++|+++++ .+..++...+ ..+++|++|+++++. +..+. . .....+++|+.|++.++
T Consensus 101 ~~l~~L~~L~L~~N-~l~~~~~~~~-----~~l~~L~~L~L~~N~-l~~~~---~-~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 101 EGLFSLQLLLLNAN-KINCLRVDAF-----QDLHNLNLLSLYDNK-LQTIA---K-GTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTT-----TTCTTCCEEECCSSC-CSCCC---T-TTTTTCTTCCEEECCSS
T ss_pred cCCCCCCEEECCCC-CCCEeCHHHc-----CCCCCCCEEECCCCc-CCEEC---H-HHHhCCCCCCEEEeCCC
Confidence 67777777777665 3444432222 226777777776643 33222 1 12344677777777765
No 93
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.95 E-value=1.1e-09 Score=80.24 Aligned_cols=107 Identities=19% Similarity=0.215 Sum_probs=48.9
Q ss_pred CCCceEEEEeeCCC--CCCCccCCCCCCccceEEEeCCCCCCCCCCCCCCCCCceeeecccccceE-eCccccCCCCCcc
Q 040143 94 TNIKKLEITRYSGR--KFPIWLGDPSFSNMVTLKLIGCANCTSLPAVGKLVSLKELTIRRMLVLRS-IGSEICGKDCSTP 170 (232)
Q Consensus 94 ~~L~~L~l~~~~~~--~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~l~~L~~L~~L~l~~~~~l~~-~~~~~~~~~~~~~ 170 (232)
++|+.|+++++... .+|..+. .+++|++|++++|. +..++.++.+++|++|+++++. +.. ++..+ ..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~--~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~------~~ 93 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTA--EFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENR-IFGGLDMLA------EK 93 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCG--GGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCC-CCSCCCHHH------HH
T ss_pred ccCCEEECCCCCCChhhHHHHHH--hCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCc-CchHHHHHH------hh
Confidence 45555555554443 3444432 34555555555554 3333445555555555555542 222 22111 11
Q ss_pred CCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCC
Q 040143 171 FQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLS 215 (232)
Q Consensus 171 ~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~ 215 (232)
+++|++|+++++ .+..+. .......+++|+.|++++| .+.
T Consensus 94 l~~L~~L~Ls~N-~l~~~~---~~~~l~~l~~L~~L~l~~N-~l~ 133 (168)
T 2ell_A 94 LPNLTHLNLSGN-KLKDIS---TLEPLKKLECLKSLDLFNC-EVT 133 (168)
T ss_dssp CTTCCEEECBSS-SCCSSG---GGGGGSSCSCCCEEECCSS-GGG
T ss_pred CCCCCEEeccCC-ccCcch---hHHHHhcCCCCCEEEeeCC-cCc
Confidence 555555555554 222221 1112234555555555555 444
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.94 E-value=2.9e-08 Score=81.31 Aligned_cols=177 Identities=15% Similarity=0.113 Sum_probs=105.2
Q ss_pred CCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEe-eCCCCC-CC
Q 040143 34 FLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITR-YSGRKF-PI 111 (232)
Q Consensus 34 ~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~-p~ 111 (232)
.++ .|.+.+. .+..+. ...++++++|++|+++++.-.... -...+..++++..+.+.+ +....+ |.
T Consensus 31 ~l~-~L~Ls~N-~i~~i~---~~~f~~l~~L~~L~Ls~N~i~~~i-------~~~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 31 NAI-ELRFVLT-KLRVIQ---KGAFSGFGDLEKIEISQNDVLEVI-------EADVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp TCS-EEEEESC-CCSEEC---TTSSTTCTTCCEEEEECCTTCCEE-------CTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCC-EEEccCC-cCCCcC---HHHHcCCCCCCEEECcCCCCCCcc-------ChhHhhcchhhhhhhcccCCcccccCch
Confidence 466 6777542 332222 234778899999999987421100 011234456777655544 344444 44
Q ss_pred ccCCCCCCccceEEEeCCCCCCCCCC--CCCCCCCceeeecccccceEeCccccCC-------------------CCCcc
Q 040143 112 WLGDPSFSNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRMLVLRSIGSEICGK-------------------DCSTP 170 (232)
Q Consensus 112 ~~~~~~l~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~-------------------~~~~~ 170 (232)
.+. .+++|++|+++++. +..+|. .....++..+++.++..+..++...+.. ...+.
T Consensus 99 ~f~--~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~ 175 (350)
T 4ay9_X 99 AFQ--NLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN 175 (350)
T ss_dssp SBC--CCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST
T ss_pred hhh--hccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc
Confidence 444 58899999999875 456665 4556677888887777777765432211 01122
Q ss_pred CCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC-CCCCcceEEeC
Q 040143 171 FQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD-HLPALETLALS 231 (232)
Q Consensus 171 ~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~-~l~~L~~L~i~ 231 (232)
.++|+.+.+.++..+..+. . .....+++|+.|+++++ +++ .+|. .+.+|++|++.
T Consensus 176 ~~~L~~l~l~~~n~l~~i~---~-~~f~~l~~L~~LdLs~N-~l~-~lp~~~~~~L~~L~~l 231 (350)
T 4ay9_X 176 GTQLDELNLSDNNNLEELP---N-DVFHGASGPVILDISRT-RIH-SLPSYGLENLKKLRAR 231 (350)
T ss_dssp TEEEEEEECTTCTTCCCCC---T-TTTTTEECCSEEECTTS-CCC-CCCSSSCTTCCEEECT
T ss_pred ccchhHHhhccCCcccCCC---H-HHhccCcccchhhcCCC-CcC-ccChhhhccchHhhhc
Confidence 3445555555444444333 1 12245788999999988 888 8875 57777777654
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.93 E-value=1.9e-08 Score=76.23 Aligned_cols=130 Identities=18% Similarity=0.176 Sum_probs=88.9
Q ss_pred ccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC--C
Q 040143 61 KKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA--V 138 (232)
Q Consensus 61 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--l 138 (232)
.+++++|+++++.-... ....+..+++|++|+++++....+|.... ..+++|++|++++|. +..++. +
T Consensus 27 ~~~l~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~~~~~ 96 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSL--------PNGVFDELTSLTQLYLGGNKLQSLPNGVF-NKLTSLTYLNLSTNQ-LQSLPNGVF 96 (208)
T ss_dssp CTTCSEEECCSSCCCCC--------CTTTTTTCTTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred CCCCcEEEcCCCccCcC--------ChhhhcccccCcEEECCCCccCccChhhc-CCCCCcCEEECCCCc-CCccCHhHh
Confidence 35789999987643210 01124556899999998877666655321 147899999999875 456665 7
Q ss_pred CCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCC
Q 040143 139 GKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWC 211 (232)
Q Consensus 139 ~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c 211 (232)
+.+++|++|+++++ .+..++...+ ..+++|++|+++++ .+..+. . .....+++|+.|++.++
T Consensus 97 ~~l~~L~~L~L~~N-~l~~~~~~~~-----~~l~~L~~L~l~~N-~l~~~~---~-~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 97 DKLTQLKELALNTN-QLQSLPDGVF-----DKLTQLKDLRLYQN-QLKSVP---D-GVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTT-----TTCTTCCEEECCSS-CCSCCC---T-TTTTTCTTCCEEECCSC
T ss_pred cCccCCCEEEcCCC-cCcccCHhHh-----ccCCcCCEEECCCC-ccceeC---H-HHhccCCCccEEEecCC
Confidence 89999999999876 4555554322 23899999999876 344333 1 22356899999999988
No 96
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.92 E-value=1.5e-08 Score=88.14 Aligned_cols=147 Identities=16% Similarity=0.119 Sum_probs=96.6
Q ss_pred CcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCCC---CccCCCCCCccceEEEeCCCCCCCC
Q 040143 59 GDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKFP---IWLGDPSFSNMVTLKLIGCANCTSL 135 (232)
Q Consensus 59 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p---~~~~~~~l~~L~~L~l~~c~~~~~l 135 (232)
+.+++|++|+++++.-.. .....+..+++|++|+++++....++ .++. .+++|++|++++|.....+
T Consensus 350 ~~l~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~--~l~~L~~L~l~~N~l~~~~ 419 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTD--------SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK--NMSSLETLDVSLNSLNSHA 419 (562)
T ss_dssp SSCCCCCEEECCSSCCCT--------TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT--TCTTCCEEECTTSCCBSCC
T ss_pred cCCCCceEEECCCCcccc--------chhhhhcccCCCCEEECCCCCcCCcccchhhhc--CCCCCCEEECCCCcCCCcc
Confidence 456777777776653211 12334556678888888776555443 2333 4678888888887654446
Q ss_pred CC--CCCCCCCceeeecccccceEeCccccCCCCCccC-CccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCC
Q 040143 136 PA--VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPF-QSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCP 212 (232)
Q Consensus 136 ~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~-p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~ 212 (232)
|. +..+++|++|+++++.-...++ ..+ ++|++|+++++ .+..+. .....+++|+.|++++|
T Consensus 420 ~~~~~~~l~~L~~L~l~~n~l~~~~~---------~~l~~~L~~L~L~~N-~l~~ip-----~~~~~l~~L~~L~L~~N- 483 (562)
T 3a79_B 420 YDRTCAWAESILVLNLSSNMLTGSVF---------RCLPPKVKVLDLHNN-RIMSIP-----KDVTHLQALQELNVASN- 483 (562)
T ss_dssp SSCCCCCCTTCCEEECCSSCCCGGGG---------SSCCTTCSEEECCSS-CCCCCC-----TTTTSSCCCSEEECCSS-
T ss_pred ChhhhcCcccCCEEECCCCCCCcchh---------hhhcCcCCEEECCCC-cCcccC-----hhhcCCCCCCEEECCCC-
Confidence 64 6778888888887764211111 114 68999999886 455433 34457999999999999
Q ss_pred CCCCCCCC----CCCCcceEEeCC
Q 040143 213 KLSGKLPD----HLPALETLALSD 232 (232)
Q Consensus 213 ~l~~~lp~----~l~~L~~L~i~~ 232 (232)
+++ .+|. .+++|+.|++.+
T Consensus 484 ~l~-~l~~~~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 484 QLK-SVPDGVFDRLTSLQYIWLHD 506 (562)
T ss_dssp CCC-CCCTTSTTTCTTCCCEECCS
T ss_pred CCC-CCCHHHHhcCCCCCEEEecC
Confidence 888 7775 367788888753
No 97
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.90 E-value=1.1e-08 Score=86.84 Aligned_cols=57 Identities=18% Similarity=0.170 Sum_probs=36.0
Q ss_pred CCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCCCCCCCCCceeeeccc
Q 040143 90 LQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPAVGKLVSLKELTIRRM 152 (232)
Q Consensus 90 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~l~~L~~L~~L~l~~~ 152 (232)
+..+++|++|+++++....+|.+ +++|++|++++|. +..+|.++.+++|++|+++++
T Consensus 149 ~~~l~~L~~L~l~~N~l~~lp~~-----~~~L~~L~L~~n~-l~~l~~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKKLPDL-----PPSLEFIAAGNNQ-LEELPELQNLPFLTAIYADNN 205 (454)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSS
T ss_pred cCCCCCCCEEECCCCcCcccCCC-----cccccEEECcCCc-CCcCccccCCCCCCEEECCCC
Confidence 45556677777666555445543 3467777777664 445666777777777777665
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.88 E-value=4e-11 Score=99.64 Aligned_cols=127 Identities=15% Similarity=0.138 Sum_probs=69.1
Q ss_pred CCCceEEEEeeCCC--CCCC---ccCCCCCCccceEEEeCCCCCC-----CCC-CCCCCCCCceeeecccccc-----eE
Q 040143 94 TNIKKLEITRYSGR--KFPI---WLGDPSFSNMVTLKLIGCANCT-----SLP-AVGKLVSLKELTIRRMLVL-----RS 157 (232)
Q Consensus 94 ~~L~~L~l~~~~~~--~~p~---~~~~~~l~~L~~L~l~~c~~~~-----~l~-~l~~L~~L~~L~l~~~~~l-----~~ 157 (232)
++|++|+++++... .+|. .+. .+++|++|++++|.... -++ .+..+++|++|+++++. + ..
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~--~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~ 235 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQ--SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSA 235 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHH--HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHH--hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHH
Confidence 56777777655433 1221 111 24577777777764321 133 46677788888887664 3 22
Q ss_pred eCccccCCCCCccCCccceEeccCCcccccccccCcCCcc--CCCCcccEEeEcCCCCCCC----CCCC----CCCCcce
Q 040143 158 IGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTGYV--EIFPRLVELYIEWCPKLSG----KLPD----HLPALET 227 (232)
Q Consensus 158 ~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~--~~lp~L~~L~l~~c~~l~~----~lp~----~l~~L~~ 227 (232)
++..+ ..+|+|++|+++++. +.......++... +.+++|+.|++++| ++.+ .+|. .+++|+.
T Consensus 236 l~~~l------~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~ 307 (386)
T 2ca6_A 236 LAIAL------KSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLF 307 (386)
T ss_dssp HHHHG------GGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCE
T ss_pred HHHHH------ccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceE
Confidence 22212 236778888887764 2211000000111 34788888888888 6662 1553 3577888
Q ss_pred EEeC
Q 040143 228 LALS 231 (232)
Q Consensus 228 L~i~ 231 (232)
|++.
T Consensus 308 L~l~ 311 (386)
T 2ca6_A 308 LELN 311 (386)
T ss_dssp EECT
T ss_pred EEcc
Confidence 7765
No 99
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.88 E-value=5.6e-08 Score=85.58 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=21.0
Q ss_pred CCCcccEEeEcCCCCCCCCCCCCCCCcceEEeC
Q 040143 199 IFPRLVELYIEWCPKLSGKLPDHLPALETLALS 231 (232)
Q Consensus 199 ~lp~L~~L~l~~c~~l~~~lp~~l~~L~~L~i~ 231 (232)
.+++|+.|++++| ++. .+|..+++|+.|+++
T Consensus 239 ~l~~L~~L~Ls~N-~L~-~lp~~~~~L~~L~Ls 269 (622)
T 3g06_A 239 LPSELKELMVSGN-RLT-SLPMLPSGLLSLSVY 269 (622)
T ss_dssp CCTTCCEEECCSS-CCS-CCCCCCTTCCEEECC
T ss_pred CCCcCcEEECCCC-CCC-cCCcccccCcEEeCC
Confidence 3567777777777 666 666666677777664
No 100
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.87 E-value=1.9e-09 Score=79.74 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=25.6
Q ss_pred CCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC--CCCCCCCceeeeccc
Q 040143 95 NIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRM 152 (232)
Q Consensus 95 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~ 152 (232)
+|++|+++++....+ ..+. .+++|++|++++|. +..+|. ++.+++|++|+++++
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~--~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N 98 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFP--LLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNN 98 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCC--CCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSC
T ss_pred CCCEEECCCCCCCcc-cccc--cCCCCCEEECCCCc-ccccCcchhhcCCCCCEEECCCC
Confidence 555555555443333 1222 24555555555543 233433 245555555555544
No 101
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.82 E-value=1.1e-07 Score=83.67 Aligned_cols=51 Identities=25% Similarity=0.297 Sum_probs=36.9
Q ss_pred CCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC---CCCCcceEEeCC
Q 040143 171 FQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD---HLPALETLALSD 232 (232)
Q Consensus 171 ~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~---~l~~L~~L~i~~ 232 (232)
+++|+.|+++++ .+..+. . .+++|+.|++++| ++. .+|. .+++|+.|++.+
T Consensus 240 l~~L~~L~Ls~N-~L~~lp-----~---~~~~L~~L~Ls~N-~L~-~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 240 PSELKELMVSGN-RLTSLP-----M---LPSGLLSLSVYRN-QLT-RLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp CTTCCEEECCSS-CCSCCC-----C---CCTTCCEEECCSS-CCC-SCCGGGGGSCTTCEEECCS
T ss_pred CCcCcEEECCCC-CCCcCC-----c---ccccCcEEeCCCC-CCC-cCCHHHhhccccCEEEecC
Confidence 567777777665 333322 1 5789999999999 888 8885 478888888763
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.81 E-value=3.4e-08 Score=76.13 Aligned_cols=109 Identities=19% Similarity=0.196 Sum_probs=64.2
Q ss_pred ccCcccCCCceEEEecCCCCCCchhhHHHHH-hcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCC
Q 040143 57 SLGDKKGLEELSLGWGSPFHSRNEIAEEKVL-DMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSL 135 (232)
Q Consensus 57 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l 135 (232)
.+.++++|++|+++++.-.. +. ..+..+++|+.|+++++....+|..... .+++|++|+++++. +..+
T Consensus 59 ~~~~l~~L~~L~L~~N~l~~---------i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~l~~L~~L~Ls~N~-l~~l 127 (229)
T 3e6j_A 59 VFDSLINLKELYLGSNQLGA---------LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD-RLVHLKELFMCCNK-LTEL 127 (229)
T ss_dssp TTTTCTTCCEEECCSSCCCC---------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSC-CCSC
T ss_pred HhhCccCCcEEECCCCCCCC---------cChhhcccCCCcCEEECCCCcCCccChhHhC-cchhhCeEeccCCc-cccc
Confidence 35666777777776653211 11 1234456777777776665555443211 46677777777664 4466
Q ss_pred CC-CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCC
Q 040143 136 PA-VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDL 182 (232)
Q Consensus 136 ~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~ 182 (232)
|. ++.+++|++|+++++ .+..++...+ ..+++|+.|++.+.
T Consensus 128 p~~~~~l~~L~~L~L~~N-~l~~~~~~~~-----~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 128 PRGIERLTHLTHLALDQN-QLKSIPHGAF-----DRLSSLTHAYLFGN 169 (229)
T ss_dssp CTTGGGCTTCSEEECCSS-CCCCCCTTTT-----TTCTTCCEEECTTS
T ss_pred CcccccCCCCCEEECCCC-cCCccCHHHH-----hCCCCCCEEEeeCC
Confidence 65 677777777777664 4555543322 23677777777654
No 103
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.78 E-value=2.9e-08 Score=86.98 Aligned_cols=131 Identities=19% Similarity=0.200 Sum_probs=84.5
Q ss_pred cCCCceEEEecCCCCCCchhhHHHH-HhcCCCCCCCceEEEEeeCCCCCCC-ccCCCCCCccceEEEeCCCCCCCCCC--
Q 040143 62 KGLEELSLGWGSPFHSRNEIAEEKV-LDMLQPHTNIKKLEITRYSGRKFPI-WLGDPSFSNMVTLKLIGCANCTSLPA-- 137 (232)
Q Consensus 62 ~~L~~L~l~~~~~~~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~l~~-- 137 (232)
+++++|+++++.-.. + ..++..+++|++|+++++....+|. .+. .+++|++|++++|. ++.+|.
T Consensus 52 ~~~~~LdLs~N~i~~---------l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~--~L~~L~~L~Ls~N~-l~~l~~~~ 119 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRH---------LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNP-IQSLALGA 119 (635)
T ss_dssp TTCCEEECTTSCCCE---------ECTTTTTTCTTCCEEECTTCCCCEECTTTTT--TCTTCCEEECTTCC-CCEECGGG
T ss_pred cCCCEEEeeCCCCCC---------CCHHHHhCCCCCCEEECCCCcCCCcChhHhc--CCCCCCEEEccCCc-CCCCCHHH
Confidence 367888887663211 1 1235556788888888776655544 333 47788888888874 566664
Q ss_pred CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCC
Q 040143 138 VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLS 215 (232)
Q Consensus 138 l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~ 215 (232)
++.+++|++|+++++ .+..++...+ +.+++|++|+++++. +.... .+...+.+++|+.|++++| ++.
T Consensus 120 f~~L~~L~~L~Ls~N-~l~~l~~~~~-----~~L~~L~~L~Ls~N~-l~~~~---~~~~~~~l~~L~~L~L~~N-~l~ 186 (635)
T 4g8a_A 120 FSGLSSLQKLVAVET-NLASLENFPI-----GHLKTLKELNVAHNL-IQSFK---LPEYFSNLTNLEHLDLSSN-KIQ 186 (635)
T ss_dssp GTTCTTCCEEECTTS-CCCCSTTCCC-----TTCTTCCEEECCSSC-CCCCC---CCGGGGGCTTCCEEECCSS-CCC
T ss_pred hcCCCCCCEEECCCC-cCCCCChhhh-----hcCcccCeeccccCc-cccCC---CchhhccchhhhhhcccCc-ccc
Confidence 788888888888776 4555543322 237888888887653 32222 2233456888888888887 666
No 104
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.75 E-value=1.6e-10 Score=96.06 Aligned_cols=110 Identities=19% Similarity=0.149 Sum_probs=59.4
Q ss_pred CccceEEEeCCCCC-CCCC----CCCCCCCCceeeecccccceEeCcc-ccCCCCCccCCccceEeccCCcccccccccC
Q 040143 119 SNMVTLKLIGCANC-TSLP----AVGKLVSLKELTIRRMLVLRSIGSE-ICGKDCSTPFQSLETLCFSDLPELEFWDTGN 192 (232)
Q Consensus 119 ~~L~~L~l~~c~~~-~~l~----~l~~L~~L~~L~l~~~~~l~~~~~~-~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~ 192 (232)
++|++|++++|... ..++ .+..+++|++|++++|. +...... +.. .....+++|++|+++++. +.....+.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~-~~l~~~~~L~~L~Ls~n~-l~~~g~~~ 235 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLL-EGLAYCQELKVLDLQDNT-FTHLGSSA 235 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHH-TTGGGCTTCCEEECCSSC-CHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHH-HHhhcCCCccEEECcCCC-CCcHHHHH
Confidence 57777777766532 2333 14456777788777663 2211000 000 022347888888887764 21100000
Q ss_pred cCCccCCCCcccEEeEcCCCCCCCC----CCC-----CCCCcceEEeCC
Q 040143 193 QTGYVEIFPRLVELYIEWCPKLSGK----LPD-----HLPALETLALSD 232 (232)
Q Consensus 193 ~~~~~~~lp~L~~L~l~~c~~l~~~----lp~-----~l~~L~~L~i~~ 232 (232)
++.....+|+|+.|++++| ++.+. +|. .+++|++|++++
T Consensus 236 l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~ 283 (386)
T 2ca6_A 236 LAIALKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQY 283 (386)
T ss_dssp HHHHGGGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCS
T ss_pred HHHHHccCCCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcC
Confidence 1123345788999999888 56522 232 267788888753
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.75 E-value=5.9e-08 Score=74.31 Aligned_cols=106 Identities=15% Similarity=0.156 Sum_probs=62.6
Q ss_pred CCCCCceEEEEeeCCCCCCC-ccCCCCCCccceEEEeCCCCCCCCCC--CCCCCCCceeeecccccceEeCccccCCCCC
Q 040143 92 PHTNIKKLEITRYSGRKFPI-WLGDPSFSNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRMLVLRSIGSEICGKDCS 168 (232)
Q Consensus 92 ~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~ 168 (232)
.+++|++|+++++....++. .+. .+++|++|+++++.. ..++. ++.+++|++|+++++ .+..++...+
T Consensus 55 ~l~~L~~L~L~~N~i~~i~~~~~~--~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~----- 125 (220)
T 2v70_A 55 KLPQLRKINFSNNKITDIEEGAFE--GASGVNEILLTSNRL-ENVQHKMFKGLESLKTLMLRSN-RITCVGNDSF----- 125 (220)
T ss_dssp GCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCC-CCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSS-----
T ss_pred cCCCCCEEECCCCcCCEECHHHhC--CCCCCCEEECCCCcc-CccCHhHhcCCcCCCEEECCCC-cCCeECHhHc-----
Confidence 35677777777665555443 333 467777777777653 44443 677777777777665 3444432211
Q ss_pred ccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCC
Q 040143 169 TPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWC 211 (232)
Q Consensus 169 ~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c 211 (232)
..+++|++|++.++ .+.... +.....+++|+.|++.++
T Consensus 126 ~~l~~L~~L~L~~N-~l~~~~----~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 126 IGLSSVRLLSLYDN-QITTVA----PGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp TTCTTCSEEECTTS-CCCCBC----TTTTTTCTTCCEEECCSC
T ss_pred CCCccCCEEECCCC-cCCEEC----HHHhcCCCCCCEEEecCc
Confidence 23677777777664 233322 123345777777777765
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.72 E-value=7.9e-08 Score=79.09 Aligned_cols=148 Identities=19% Similarity=0.158 Sum_probs=97.0
Q ss_pred cCCCceEEEecCCCCCCchhhHHHHH-hcCC-CCCCCceEEEEeeCCCCCCC-ccCCCCCCccceEEEeCCCCCCCCCC-
Q 040143 62 KGLEELSLGWGSPFHSRNEIAEEKVL-DMLQ-PHTNIKKLEITRYSGRKFPI-WLGDPSFSNMVTLKLIGCANCTSLPA- 137 (232)
Q Consensus 62 ~~L~~L~l~~~~~~~~~~~~~~~~~~-~~l~-~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~l~~- 137 (232)
..++.|+++++.-.. +. ..+. .+++|++|+++++....++. .+. .+++|++|+++++. +..++.
T Consensus 39 ~~l~~L~Ls~N~l~~---------l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~--~l~~L~~L~Ls~N~-l~~~~~~ 106 (361)
T 2xot_A 39 SYTALLDLSHNNLSR---------LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV--PVPNLRYLDLSSNH-LHTLDEF 106 (361)
T ss_dssp TTCSEEECCSSCCCE---------ECTTSSSSCCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSC-CCEECTT
T ss_pred CCCCEEECCCCCCCc---------cChhhhhhcccccCEEECCCCcCCccChhhcc--CCCCCCEEECCCCc-CCcCCHH
Confidence 457889998764221 11 1233 56899999998877666553 343 57899999999876 556654
Q ss_pred -CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCC
Q 040143 138 -VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSG 216 (232)
Q Consensus 138 -l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~ 216 (232)
+..+++|++|+++++ .+..++...+ ..+++|+.|+++++ .+..+..+.+ .....+++|+.|+++++ ++.
T Consensus 107 ~~~~l~~L~~L~L~~N-~i~~~~~~~~-----~~l~~L~~L~L~~N-~l~~l~~~~~-~~~~~l~~L~~L~L~~N-~l~- 176 (361)
T 2xot_A 107 LFSDLQALEVLLLYNN-HIVVVDRNAF-----EDMAQLQKLYLSQN-QISRFPVELI-KDGNKLPKLMLLDLSSN-KLK- 176 (361)
T ss_dssp TTTTCTTCCEEECCSS-CCCEECTTTT-----TTCTTCCEEECCSS-CCCSCCGGGT-C----CTTCCEEECCSS-CCC-
T ss_pred HhCCCcCCCEEECCCC-cccEECHHHh-----CCcccCCEEECCCC-cCCeeCHHHh-cCcccCCcCCEEECCCC-CCC-
Confidence 889999999999876 4666543322 23899999999875 3443320001 11146899999999998 888
Q ss_pred CCCC----CCCC--cceEEeC
Q 040143 217 KLPD----HLPA--LETLALS 231 (232)
Q Consensus 217 ~lp~----~l~~--L~~L~i~ 231 (232)
.+|. .++. ++.|++.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~ 197 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLH 197 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECC
T ss_pred ccCHHHhhhccHhhcceEEec
Confidence 7763 2444 3556654
No 107
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.71 E-value=4.7e-08 Score=85.64 Aligned_cols=126 Identities=19% Similarity=0.185 Sum_probs=83.6
Q ss_pred CCCCceEEEEeeCCCCC-CCccCCCCCCccceEEEeCCCCCCC-CCC-CCCCCCCceeeecccccceEeCccccCCCCCc
Q 040143 93 HTNIKKLEITRYSGRKF-PIWLGDPSFSNMVTLKLIGCANCTS-LPA-VGKLVSLKELTIRRMLVLRSIGSEICGKDCST 169 (232)
Q Consensus 93 ~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~-l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 169 (232)
+.+++.+++..+..... |.... .+++|++|++++|..... .|. ++.+++|++|+++++ .++.++...++
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~--~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~----- 515 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFN--GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFN----- 515 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTT--TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTT-----
T ss_pred ccccccccccccccccccccccc--cchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHHHc-----
Confidence 45566666554433222 22222 467899999988765544 344 888999999999887 56666543222
Q ss_pred cCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCCC---C-CCcceEEeCC
Q 040143 170 PFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPDH---L-PALETLALSD 232 (232)
Q Consensus 170 ~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~~---l-~~L~~L~i~~ 232 (232)
.+++|++|+++++ ++..+. . .....+++|+.|+++++ ++.+..|.. + ++|+.|++.+
T Consensus 516 ~l~~L~~L~Ls~N-~l~~l~---~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 516 SLSSLQVLNMSHN-NFFSLD---T-FPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp TCTTCCEEECTTS-CCCBCC---C-GGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTT
T ss_pred CCCCCCEEECCCC-cCCCCC---h-hHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeC
Confidence 3899999999886 344433 1 23456899999999999 887444543 3 5788888764
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.69 E-value=8.9e-08 Score=73.30 Aligned_cols=129 Identities=15% Similarity=0.173 Sum_probs=88.1
Q ss_pred CCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCCCCcc
Q 040143 34 FLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKFPIWL 113 (232)
Q Consensus 34 ~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~ 113 (232)
.++ .|.+.+. .+.. .....+..+++|++|+++++.-.. .....+..+++|++|+++++....+|...
T Consensus 33 ~l~-~L~l~~n-~i~~---i~~~~~~~l~~L~~L~Ls~N~i~~--------~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 99 (220)
T 2v9t_B 33 TIT-EIRLEQN-TIKV---IPPGAFSPYKKLRRIDLSNNQISE--------LAPDAFQGLRSLNSLVLYGNKITELPKSL 99 (220)
T ss_dssp TCC-EEECCSS-CCCE---ECTTSSTTCTTCCEEECCSSCCCE--------ECTTTTTTCSSCCEEECCSSCCCCCCTTT
T ss_pred CCC-EEECCCC-cCCC---cCHhHhhCCCCCCEEECCCCcCCC--------cCHHHhhCCcCCCEEECCCCcCCccCHhH
Confidence 466 6666542 2221 122346778999999998774321 01234566789999999988877777654
Q ss_pred CCCCCCccceEEEeCCCCCCCCC-C-CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCc
Q 040143 114 GDPSFSNMVTLKLIGCANCTSLP-A-VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLP 183 (232)
Q Consensus 114 ~~~~l~~L~~L~l~~c~~~~~l~-~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 183 (232)
.. .+++|++|+++++. +..++ . ++.+++|++|+++++ .+..++...+ ..+++|+.|++.+.+
T Consensus 100 f~-~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~-----~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 100 FE-GLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTF-----SPLRAIQTMHLAQNP 163 (220)
T ss_dssp TT-TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTT-----TTCTTCCEEECCSSC
T ss_pred cc-CCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHH-----hCCCCCCEEEeCCCC
Confidence 21 57899999999986 44553 3 889999999999876 4666554322 238999999998743
No 109
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.68 E-value=3.5e-09 Score=75.98 Aligned_cols=105 Identities=12% Similarity=0.159 Sum_probs=61.8
Q ss_pred CCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC-CCCCCCCceeeecccccceEeC--ccccCCCC
Q 040143 91 QPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA-VGKLVSLKELTIRRMLVLRSIG--SEICGKDC 167 (232)
Q Consensus 91 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~~~~l~~~~--~~~~~~~~ 167 (232)
..+++|++|+++++....+ ..+. .+++|++|++++|.....+|. ++.+++|++|+++++. +..++ ..+
T Consensus 39 ~~l~~L~~L~l~~n~l~~~-~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~----- 109 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSI-ANLP--KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPL----- 109 (149)
T ss_dssp TTCTTCCEEECTTSCCCCC-TTCC--CCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHGGG-----
T ss_pred hhcCCCcEEECcCCCCCCc-hhhh--cCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc-CCChHHHHHH-----
Confidence 4456777777766554444 3333 467788888877764443555 5567888888887763 44332 122
Q ss_pred CccCCccceEeccCCcccccccccCc--CCccCCCCcccEEeEc
Q 040143 168 STPFQSLETLCFSDLPELEFWDTGNQ--TGYVEIFPRLVELYIE 209 (232)
Q Consensus 168 ~~~~p~L~~L~l~~~~~l~~~~~~~~--~~~~~~lp~L~~L~l~ 209 (232)
..+|+|++|+++++. +..+. . ....+.+|+|+.|+++
T Consensus 110 -~~l~~L~~L~l~~N~-l~~~~---~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 110 -KKLENLKSLDLFNCE-VTNLN---DYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp -GGCTTCCEEECTTCG-GGGST---THHHHHHHHCTTCCEETTB
T ss_pred -hhCCCCCEEeCcCCc-ccchH---HHHHHHHHHCCCcccccCC
Confidence 337888888887763 33222 1 0123457888887764
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.66 E-value=4.6e-08 Score=85.29 Aligned_cols=119 Identities=18% Similarity=0.219 Sum_probs=90.9
Q ss_pred CCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC-CCCCCCCceeeecccccceEeCccccCCCCCccCC
Q 040143 94 TNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA-VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQ 172 (232)
Q Consensus 94 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p 172 (232)
..|+.|+++++....+|. +. .+++|++|++++|. +..+|. ++.+++|++|+++++ .+..++ .+. .++
T Consensus 441 ~~L~~L~Ls~n~l~~lp~-~~--~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~------~l~ 508 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCH-LE--QLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDN-ALENVD-GVA------NLP 508 (567)
T ss_dssp TTCSEEECTTSCCSSCCC-GG--GGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGT------TCS
T ss_pred cCceEEEecCCCCCCCcC-cc--ccccCcEeecCccc-ccccchhhhcCCCCCEEECCCC-CCCCCc-ccC------CCC
Confidence 369999999887777887 44 58899999999986 558887 999999999999876 466665 333 399
Q ss_pred ccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC-------CCCCcceEEe
Q 040143 173 SLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD-------HLPALETLAL 230 (232)
Q Consensus 173 ~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~-------~l~~L~~L~i 230 (232)
+|+.|+++++ .+.... .+...+.+++|+.|++++| .+. .+|+ .+|+|+.|++
T Consensus 509 ~L~~L~Ls~N-~l~~~~---~p~~l~~l~~L~~L~L~~N-~l~-~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 509 RLQELLLCNN-RLQQSA---AIQPLVSCPRLVLLNLQGN-SLC-QEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCEEECCSS-CCCSSS---TTGGGGGCTTCCEEECTTS-GGG-GSSSCTTHHHHHCTTCSEEEC
T ss_pred CCcEEECCCC-CCCCCC---CcHHHhcCCCCCEEEecCC-cCC-CCccHHHHHHHHCcccCccCC
Confidence 9999999886 344331 1345667999999999999 777 4443 2788888753
No 111
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.64 E-value=1.6e-07 Score=70.22 Aligned_cols=108 Identities=16% Similarity=0.182 Sum_probs=73.7
Q ss_pred CCCceEEEEeeCCCCCCCc--cCCCCCCccceEEEeCCCCCCCCCC-CCCCCCCceeeecccccceEeCccccCCCCCcc
Q 040143 94 TNIKKLEITRYSGRKFPIW--LGDPSFSNMVTLKLIGCANCTSLPA-VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTP 170 (232)
Q Consensus 94 ~~L~~L~l~~~~~~~~p~~--~~~~~l~~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 170 (232)
.+++.|+++++....++.. +. .+++|++|+++++....-.|. ++.+++|++|+++++ .+..++...+ ..
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-----~~ 100 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFG--RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMF-----LG 100 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGG--GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSS-----TT
T ss_pred CCCCEEECCCCcCCccCCccccc--cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHh-----cC
Confidence 4888999888766665542 33 478899999988764433344 888999999999775 4666654322 23
Q ss_pred CCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCC
Q 040143 171 FQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLS 215 (232)
Q Consensus 171 ~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~ 215 (232)
+++|++|+++++. +.... +...+.+++|+.|+++++ .+.
T Consensus 101 l~~L~~L~L~~N~-l~~~~----~~~~~~l~~L~~L~L~~N-~l~ 139 (192)
T 1w8a_A 101 LHQLKTLNLYDNQ-ISCVM----PGSFEHLNSLTSLNLASN-PFN 139 (192)
T ss_dssp CTTCCEEECCSSC-CCEEC----TTSSTTCTTCCEEECTTC-CBC
T ss_pred CCCCCEEECCCCc-CCeeC----HHHhhcCCCCCEEEeCCC-Ccc
Confidence 8889999987753 33332 234456889999999887 444
No 112
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.62 E-value=5.6e-07 Score=66.24 Aligned_cols=108 Identities=18% Similarity=0.258 Sum_probs=68.4
Q ss_pred CCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC--CCCCCCCceeeecccccceEeCccccCCCCCccC
Q 040143 94 TNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPF 171 (232)
Q Consensus 94 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 171 (232)
++|+.|+++++....+|.... ..+++|++|+++++. +..++. ++.+++|++|+++++ .+..++...+ ..+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~-----~~l 99 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVF-DKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVF-----DKL 99 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTT-TTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT-----TTC
T ss_pred CCCcEEEeCCCcccEeCHHHh-cCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCC-CccccCHHHh-----hCC
Confidence 578888887766655554321 146788888888774 455654 678888888888765 4555543322 237
Q ss_pred CccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCC
Q 040143 172 QSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLS 215 (232)
Q Consensus 172 p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~ 215 (232)
++|++|++.++ .+..+. . .....+++|+.|++.++ .+.
T Consensus 100 ~~L~~L~l~~N-~l~~~~---~-~~~~~l~~L~~L~l~~N-~~~ 137 (177)
T 2o6r_A 100 TQLKELALDTN-QLKSVP---D-GIFDRLTSLQKIWLHTN-PWD 137 (177)
T ss_dssp TTCCEEECCSS-CCSCCC---T-TTTTTCTTCCEEECCSS-CBC
T ss_pred cccCEEECcCC-cceEeC---H-HHhcCCcccCEEEecCC-Cee
Confidence 78888888765 344333 1 12245788888888877 444
No 113
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.60 E-value=2.9e-07 Score=69.01 Aligned_cols=104 Identities=16% Similarity=0.191 Sum_probs=67.9
Q ss_pred CCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC--CCCCCCCceeeecccccceEeCccccCCCCCccC
Q 040143 94 TNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPF 171 (232)
Q Consensus 94 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 171 (232)
++++.|+++++....+|..+. .+++|++|+++++. +..++. +..+++|++|+++++ .+..++...+ ..+
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~--~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f-----~~l 101 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELS--NYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTF-----DGL 101 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGG--GCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTT-----TTC
T ss_pred CCCCEEECCCCcCchhHHHhh--cccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHh-----CCC
Confidence 578888887776666776554 47788888888765 445553 778888888888765 4555543322 237
Q ss_pred CccceEeccCCcccccccccCcCCccCCCCcccEEeEcCC
Q 040143 172 QSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWC 211 (232)
Q Consensus 172 p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c 211 (232)
++|++|++.++. +..+. . .....+++|+.|++.++
T Consensus 102 ~~L~~L~L~~N~-l~~~~---~-~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 102 KSLRLLSLHGND-ISVVP---E-GAFNDLSALSHLAIGAN 136 (193)
T ss_dssp TTCCEEECCSSC-CCBCC---T-TTTTTCTTCCEEECCSS
T ss_pred CCCCEEECCCCC-CCeeC---h-hhhhcCccccEEEeCCC
Confidence 888888887653 33322 1 12345778888888765
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.57 E-value=1.2e-07 Score=78.01 Aligned_cols=135 Identities=13% Similarity=0.129 Sum_probs=84.2
Q ss_pred cC-cccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCCCCc-cCCCCCCccceEEEeCCCCCCCC
Q 040143 58 LG-DKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKFPIW-LGDPSFSNMVTLKLIGCANCTSL 135 (232)
Q Consensus 58 l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~l~~c~~~~~l 135 (232)
+. ++++|+.|+++++.-.. . ....+..+++|++|+++++....++.. +. .+++|++|++++|.. ..+
T Consensus 59 ~~~~l~~L~~L~L~~N~i~~--i------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~i-~~~ 127 (361)
T 2xot_A 59 TPTRLTNLHSLLLSHNHLNF--I------SSEAFVPVPNLRYLDLSSNHLHTLDEFLFS--DLQALEVLLLYNNHI-VVV 127 (361)
T ss_dssp SSSCCTTCCEEECCSSCCCE--E------CTTTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCC-CEE
T ss_pred hhhcccccCEEECCCCcCCc--c------ChhhccCCCCCCEEECCCCcCCcCCHHHhC--CCcCCCEEECCCCcc-cEE
Confidence 44 77888899887663211 0 012355668899999887766555442 33 478899999988764 444
Q ss_pred -CC-CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcccccccccCcCCccCCCCc--ccEEeEcCC
Q 040143 136 -PA-VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPR--LVELYIEWC 211 (232)
Q Consensus 136 -~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~--L~~L~l~~c 211 (232)
|. ++.+++|++|+++++ .+..++..++. ....+++|+.|+++++. +..+. . .....+|. ++.|++.++
T Consensus 128 ~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~--~~~~l~~L~~L~L~~N~-l~~l~---~-~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 128 DRNAFEDMAQLQKLYLSQN-QISRFPVELIK--DGNKLPKLMLLDLSSNK-LKKLP---L-TDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCCSCCGGGTC------CTTCCEEECCSSC-CCCCC---H-HHHHHSCHHHHTTEECCSS
T ss_pred CHHHhCCcccCCEEECCCC-cCCeeCHHHhc--CcccCCcCCEEECCCCC-CCccC---H-HHhhhccHhhcceEEecCC
Confidence 33 888899999999775 56666654432 11237889999987752 33322 1 12234565 477888775
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.55 E-value=3.2e-08 Score=88.80 Aligned_cols=106 Identities=19% Similarity=0.126 Sum_probs=58.6
Q ss_pred CCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC-CCCCCCCceeeecccccceEeCccccCCCCC
Q 040143 90 LQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA-VGKLVSLKELTIRRMLVLRSIGSEICGKDCS 168 (232)
Q Consensus 90 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~ 168 (232)
+..+.+|+.|+++++....+|..+. .+++|++|+|++|. +..+|. ++.|++|++|+++++. +..+|..+.+
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~--~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~---- 291 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIF--KYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGS---- 291 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGG--GCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGG----
T ss_pred hccCCCCcEEECCCCCCCCCChhhc--CCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhcC----
Confidence 3344566666666655555554443 35666666666654 335655 6666666666666543 4444433322
Q ss_pred ccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCC
Q 040143 169 TPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWC 211 (232)
Q Consensus 169 ~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c 211 (232)
+++|++|+++++ .+..+. ...+.+++|+.|++++|
T Consensus 292 --l~~L~~L~L~~N-~l~~lp-----~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 292 --CFQLKYFYFFDN-MVTTLP-----WEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp --GTTCSEEECCSS-CCCCCC-----SSTTSCTTCCCEECTTS
T ss_pred --CCCCCEEECCCC-CCCccC-----hhhhcCCCccEEeCCCC
Confidence 666666666654 233222 23455666666666666
No 116
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.50 E-value=1e-06 Score=64.85 Aligned_cols=105 Identities=22% Similarity=0.275 Sum_probs=72.9
Q ss_pred cCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCCCCc-cCCCCCCccceEEEeCCCCCCCCCC--C
Q 040143 62 KGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKFPIW-LGDPSFSNMVTLKLIGCANCTSLPA--V 138 (232)
Q Consensus 62 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~l~~c~~~~~l~~--l 138 (232)
++|++|+++++.-... ....+..+++|++|+++++....+|.. +. .+++|++|+++++. +..+|. +
T Consensus 28 ~~l~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~N~-l~~~~~~~~ 96 (177)
T 2o6r_A 28 SSATRLELESNKLQSL--------PHGVFDKLTQLTKLSLSQNQIQSLPDGVFD--KLTKLTILYLHENK-LQSLPNGVF 96 (177)
T ss_dssp TTCSEEECCSSCCCCC--------CTTTTTTCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSC-CCCCCTTTT
T ss_pred CCCcEEEeCCCcccEe--------CHHHhcCcccccEEECCCCcceEeChhHcc--CCCccCEEECCCCC-ccccCHHHh
Confidence 6788999877642210 011245568899999988776666543 23 47899999998875 455654 7
Q ss_pred CCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCc
Q 040143 139 GKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLP 183 (232)
Q Consensus 139 ~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 183 (232)
+.+++|++|+++++ .+..++...+. .+++|++|++.+++
T Consensus 97 ~~l~~L~~L~l~~N-~l~~~~~~~~~-----~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 97 DKLTQLKELALDTN-QLKSVPDGIFD-----RLTSLQKIWLHTNP 135 (177)
T ss_dssp TTCTTCCEEECCSS-CCSCCCTTTTT-----TCTTCCEEECCSSC
T ss_pred hCCcccCEEECcCC-cceEeCHHHhc-----CCcccCEEEecCCC
Confidence 88999999999876 56666544322 38899999998754
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.50 E-value=3.3e-07 Score=70.13 Aligned_cols=109 Identities=13% Similarity=0.110 Sum_probs=73.5
Q ss_pred cCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCCCCc-cCCCCCCccceEEEeCCCCCCCC-
Q 040143 58 LGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKFPIW-LGDPSFSNMVTLKLIGCANCTSL- 135 (232)
Q Consensus 58 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~l~~c~~~~~l- 135 (232)
+.++++|++|+++++.-.. . ....+..+++|++|+++++....++.. +. .+++|++|+++++.. ..+
T Consensus 53 ~~~l~~L~~L~L~~N~i~~--i------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l-~~~~ 121 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITD--I------EEGAFEGASGVNEILLTSNRLENVQHKMFK--GLESLKTLMLRSNRI-TCVG 121 (220)
T ss_dssp GGGCTTCCEEECCSSCCCE--E------CTTTTTTCTTCCEEECCSSCCCCCCGGGGT--TCSSCCEEECTTSCC-CCBC
T ss_pred hccCCCCCEEECCCCcCCE--E------CHHHhCCCCCCCEEECCCCccCccCHhHhc--CCcCCCEEECCCCcC-CeEC
Confidence 5678889999887764211 0 012355668899999988776666543 33 478899999988764 444
Q ss_pred CC-CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCc
Q 040143 136 PA-VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLP 183 (232)
Q Consensus 136 ~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 183 (232)
|. ++.+++|++|+++++ .+..++...+ ..+++|+.|++.+.+
T Consensus 122 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~-----~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 122 NDSFIGLSSVRLLSLYDN-QITTVAPGAF-----DTLHSLSTLNLLANP 164 (220)
T ss_dssp TTSSTTCTTCSEEECTTS-CCCCBCTTTT-----TTCTTCCEEECCSCC
T ss_pred HhHcCCCccCCEEECCCC-cCCEECHHHh-----cCCCCCCEEEecCcC
Confidence 44 888899999999775 4555533222 238889999887653
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.48 E-value=7.8e-07 Score=66.49 Aligned_cols=103 Identities=18% Similarity=0.146 Sum_probs=73.6
Q ss_pred CCCceEEEecCCCCCCchhhHHHHHh--cCCCCCCCceEEEEeeCCCCC-CCccCCCCCCccceEEEeCCCCCCCCCC--
Q 040143 63 GLEELSLGWGSPFHSRNEIAEEKVLD--MLQPHTNIKKLEITRYSGRKF-PIWLGDPSFSNMVTLKLIGCANCTSLPA-- 137 (232)
Q Consensus 63 ~L~~L~l~~~~~~~~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~l~~-- 137 (232)
+++.|.++++.-.. +.. .+..+++|++|+++++....+ |..+. .+++|++|+++++.. ..++.
T Consensus 30 ~l~~L~l~~n~i~~---------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l-~~~~~~~ 97 (192)
T 1w8a_A 30 HTTELLLNDNELGR---------ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE--GASHIQELQLGENKI-KEISNKM 97 (192)
T ss_dssp TCSEEECCSCCCCS---------BCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCSCCC-CEECSSS
T ss_pred CCCEEECCCCcCCc---------cCCccccccCCCCCEEECCCCCCCCcCHhHcC--CcccCCEEECCCCcC-CccCHHH
Confidence 78999998764321 111 134568999999998877665 55555 588999999999864 44543
Q ss_pred CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCc
Q 040143 138 VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLP 183 (232)
Q Consensus 138 l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 183 (232)
++.+++|++|+++++ .+..+....+ ..+++|++|++.+.+
T Consensus 98 ~~~l~~L~~L~L~~N-~l~~~~~~~~-----~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 98 FLGLHQLKTLNLYDN-QISCVMPGSF-----EHLNSLTSLNLASNP 137 (192)
T ss_dssp STTCTTCCEEECCSS-CCCEECTTSS-----TTCTTCCEEECTTCC
T ss_pred hcCCCCCCEEECCCC-cCCeeCHHHh-----hcCCCCCEEEeCCCC
Confidence 889999999999886 4555543322 338999999998753
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.47 E-value=8.7e-07 Score=66.37 Aligned_cols=104 Identities=15% Similarity=0.179 Sum_probs=75.6
Q ss_pred cCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCCCC-ccCCCCCCccceEEEeCCCCCCCCCC--C
Q 040143 62 KGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKFPI-WLGDPSFSNMVTLKLIGCANCTSLPA--V 138 (232)
Q Consensus 62 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~l~~--l 138 (232)
+++++|+++++.-.. +...+..+++|+.|+++++....++. .+. .+++|++|+++++. +..++. +
T Consensus 31 ~~l~~L~L~~n~i~~---------ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~--~l~~L~~L~Ls~N~-l~~i~~~~f 98 (193)
T 2wfh_A 31 RDVTELYLDGNQFTL---------VPKELSNYKHLTLIDLSNNRISTLSNQSFS--NMTQLLTLILSYNR-LRCIPPRTF 98 (193)
T ss_dssp TTCCEEECCSSCCCS---------CCGGGGGCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSC-CCBCCTTTT
T ss_pred CCCCEEECCCCcCch---------hHHHhhcccCCCEEECCCCcCCEeCHhHcc--CCCCCCEEECCCCc-cCEeCHHHh
Confidence 578999998764321 12344556899999999887776654 343 58899999999886 555654 8
Q ss_pred CCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCc
Q 040143 139 GKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLP 183 (232)
Q Consensus 139 ~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 183 (232)
+.+++|++|+++++ .+..++...+. .+++|+.|++.+.+
T Consensus 99 ~~l~~L~~L~L~~N-~l~~~~~~~~~-----~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 99 DGLKSLRLLSLHGN-DISVVPEGAFN-----DLSALSHLAIGANP 137 (193)
T ss_dssp TTCTTCCEEECCSS-CCCBCCTTTTT-----TCTTCCEEECCSSC
T ss_pred CCCCCCCEEECCCC-CCCeeChhhhh-----cCccccEEEeCCCC
Confidence 99999999999875 56666654332 38999999998643
No 120
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.46 E-value=4.4e-08 Score=85.48 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=33.9
Q ss_pred CCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCC-CC---CCCCCcceEEeCC
Q 040143 171 FQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGK-LP---DHLPALETLALSD 232 (232)
Q Consensus 171 ~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~-lp---~~l~~L~~L~i~~ 232 (232)
+|+|++|.++++. +.+.. +......+++|+.|++++|+ +.+. ++ ..+++|+.|++++
T Consensus 462 ~~~L~~L~L~~n~-l~~~~---~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~ 522 (592)
T 3ogk_B 462 SPNVRWMLLGYVG-ESDEG---LMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQG 522 (592)
T ss_dssp CTTCCEEEECSCC-SSHHH---HHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEES
T ss_pred CccceEeeccCCC-CCHHH---HHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcC
Confidence 6677777776653 22111 11122457889999999985 5411 22 2477888888753
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.46 E-value=4.4e-08 Score=87.89 Aligned_cols=109 Identities=22% Similarity=0.197 Sum_probs=78.2
Q ss_pred cccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCC
Q 040143 56 ASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSL 135 (232)
Q Consensus 56 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l 135 (232)
..+..+.+|+.|+++++.... +...+..+++|++|+++++....+|..+. .+++|++|+|++|. +..+
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~---------l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~--~l~~L~~L~Ls~N~-l~~l 285 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFN---------ISANIFKYDFLTRLYLNGNSLTELPAEIK--NLSNLRVLDLSHNR-LTSL 285 (727)
T ss_dssp ----CCCCCCEEECTTSCCSC---------CCGGGGGCCSCSCCBCTTSCCSCCCGGGG--GGTTCCEEECTTSC-CSSC
T ss_pred hhhccCCCCcEEECCCCCCCC---------CChhhcCCCCCCEEEeeCCcCcccChhhh--CCCCCCEEeCcCCc-CCcc
Confidence 346677888999887664321 12223346889999998887777887775 58899999999886 4578
Q ss_pred CC-CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCc
Q 040143 136 PA-VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLP 183 (232)
Q Consensus 136 ~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 183 (232)
|. ++.|++|++|+++++ .+..++..+.. +++|++|+++++.
T Consensus 286 p~~~~~l~~L~~L~L~~N-~l~~lp~~~~~------l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDN-MVTTLPWEFGN------LCNLQFLGVEGNP 327 (727)
T ss_dssp CSSGGGGTTCSEEECCSS-CCCCCCSSTTS------CTTCCCEECTTSC
T ss_pred ChhhcCCCCCCEEECCCC-CCCccChhhhc------CCCccEEeCCCCc
Confidence 76 889999999999876 56677655433 8899999998764
No 122
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.46 E-value=2.4e-09 Score=93.54 Aligned_cols=32 Identities=28% Similarity=0.253 Sum_probs=17.9
Q ss_pred CCCcccEEeEcC----------CCCCCCC-C---CCCCCCcceEEe
Q 040143 199 IFPRLVELYIEW----------CPKLSGK-L---PDHLPALETLAL 230 (232)
Q Consensus 199 ~lp~L~~L~l~~----------c~~l~~~-l---p~~l~~L~~L~i 230 (232)
.+++|+.|++.+ |..+.+. + ...+++|++|++
T Consensus 340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l 385 (592)
T 3ogk_B 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV 385 (592)
T ss_dssp HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE
T ss_pred hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe
Confidence 366777777774 5444411 1 123677777765
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.36 E-value=2.9e-07 Score=80.28 Aligned_cols=124 Identities=18% Similarity=0.162 Sum_probs=86.6
Q ss_pred CCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCCCCCCC
Q 040143 63 GLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPAVGKLV 142 (232)
Q Consensus 63 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~l~~L~ 142 (232)
.|+.|+++++.-.. ++.+..+++|+.|+++++....+|..+. .+++|++|++++|. +..+|.++.++
T Consensus 442 ~L~~L~Ls~n~l~~----------lp~~~~l~~L~~L~Ls~N~l~~lp~~~~--~l~~L~~L~Ls~N~-l~~lp~l~~l~ 508 (567)
T 1dce_A 442 DVRVLHLAHKDLTV----------LCHLEQLLLVTHLDLSHNRLRALPPALA--ALRCLEVLQASDNA-LENVDGVANLP 508 (567)
T ss_dssp TCSEEECTTSCCSS----------CCCGGGGTTCCEEECCSSCCCCCCGGGG--GCTTCCEEECCSSC-CCCCGGGTTCS
T ss_pred CceEEEecCCCCCC----------CcCccccccCcEeecCcccccccchhhh--cCCCCCEEECCCCC-CCCCcccCCCC
Confidence 46777776653211 1224556899999999988888888776 58999999999986 55688899999
Q ss_pred CCceeeecccccceEe--CccccCCCCCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeE
Q 040143 143 SLKELTIRRMLVLRSI--GSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYI 208 (232)
Q Consensus 143 ~L~~L~l~~~~~l~~~--~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l 208 (232)
+|++|+++++ .+..+ +..+ ..+++|+.|++++++ +...+. ........+|+|+.|++
T Consensus 509 ~L~~L~Ls~N-~l~~~~~p~~l------~~l~~L~~L~L~~N~-l~~~~~-~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 509 RLQELLLCNN-RLQQSAAIQPL------VSCPRLVLLNLQGNS-LCQEEG-IQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCEEECCSS-CCCSSSTTGGG------GGCTTCCEEECTTSG-GGGSSS-CTTHHHHHCTTCSEEEC
T ss_pred CCcEEECCCC-CCCCCCCcHHH------hcCCCCCEEEecCCc-CCCCcc-HHHHHHHHCcccCccCC
Confidence 9999999886 45555 4333 349999999998864 333220 00001223899998863
No 124
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.36 E-value=8.3e-09 Score=84.96 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=9.3
Q ss_pred hhhhccc-CCCceEEEcc
Q 040143 27 KDLRNLT-FLRGKLCISR 43 (232)
Q Consensus 27 ~~L~~L~-~L~~~L~i~~ 43 (232)
..+.+++ +|+ .|++.+
T Consensus 44 ~~l~~~~~~L~-~L~Ls~ 60 (362)
T 3goz_A 44 QAFANTPASVT-SLNLSG 60 (362)
T ss_dssp HHHHTCCTTCC-EEECCS
T ss_pred HHHHhCCCcee-EEECcC
Confidence 4455555 666 666654
No 125
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.35 E-value=3.5e-06 Score=73.45 Aligned_cols=148 Identities=18% Similarity=0.164 Sum_probs=98.7
Q ss_pred CCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCCCCcc
Q 040143 34 FLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKFPIWL 113 (232)
Q Consensus 34 ~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~ 113 (232)
+++ .+++.+. ++..++ ..+ .++|++|+++++.-.. +. ..+++|++|+++++....+|. +
T Consensus 60 ~L~-~L~Ls~n-~L~~lp----~~l--~~~L~~L~Ls~N~l~~---------ip---~~l~~L~~L~Ls~N~l~~ip~-l 118 (571)
T 3cvr_A 60 QFS-ELQLNRL-NLSSLP----DNL--PPQITVLEITQNALIS---------LP---ELPASLEYLDACDNRLSTLPE-L 118 (571)
T ss_dssp TCS-EEECCSS-CCSCCC----SCC--CTTCSEEECCSSCCSC---------CC---CCCTTCCEEECCSSCCSCCCC-C
T ss_pred Ccc-EEEeCCC-CCCccC----HhH--cCCCCEEECcCCCCcc---------cc---cccCCCCEEEccCCCCCCcch-h
Confidence 566 7777543 232222 223 2678999997764221 11 235789999998887777776 4
Q ss_pred CCCCCCccceEEEeCCCCCCCCCCCCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcccccccccCc
Q 040143 114 GDPSFSNMVTLKLIGCANCTSLPAVGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQ 193 (232)
Q Consensus 114 ~~~~l~~L~~L~l~~c~~~~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~ 193 (232)
. .+|++|++++|. +..+|. .+++|++|+++++. +..++. .+++|++|+++++. +..+.
T Consensus 119 ~----~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N~-l~~lp~---------~l~~L~~L~Ls~N~-L~~lp---- 176 (571)
T 3cvr_A 119 P----ASLKHLDVDNNQ-LTMLPE--LPALLEYINADNNQ-LTMLPE---------LPTSLEVLSVRNNQ-LTFLP---- 176 (571)
T ss_dssp C----TTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSC-CSCCCC---------CCTTCCEEECCSSC-CSCCC----
T ss_pred h----cCCCEEECCCCc-CCCCCC--cCccccEEeCCCCc-cCcCCC---------cCCCcCEEECCCCC-CCCcc----
Confidence 3 289999998875 455877 78999999998763 554542 27889999998863 44333
Q ss_pred CCccCCCCcccEEeEcCCCCCCCCCCCCCC-Cc-------ceEEeC
Q 040143 194 TGYVEIFPRLVELYIEWCPKLSGKLPDHLP-AL-------ETLALS 231 (232)
Q Consensus 194 ~~~~~~lp~L~~L~l~~c~~l~~~lp~~l~-~L-------~~L~i~ 231 (232)
. .. ++|+.|++++| +++ .+|. ++ +| +.|+++
T Consensus 177 -~-l~--~~L~~L~Ls~N-~L~-~lp~-~~~~L~~~~~~L~~L~Ls 215 (571)
T 3cvr_A 177 -E-LP--ESLEALDVSTN-LLE-SLPA-VPVRNHHSEETEIFFRCR 215 (571)
T ss_dssp -C-CC--TTCCEEECCSS-CCS-SCCC-CC--------CCEEEECC
T ss_pred -h-hh--CCCCEEECcCC-CCC-chhh-HHHhhhcccccceEEecC
Confidence 2 22 89999999999 888 8877 43 56 777765
No 126
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.35 E-value=2.9e-09 Score=90.13 Aligned_cols=59 Identities=25% Similarity=0.157 Sum_probs=29.7
Q ss_pred CCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCC----C-C---CCCCCcceEEeC
Q 040143 171 FQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGK----L-P---DHLPALETLALS 231 (232)
Q Consensus 171 ~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~----l-p---~~l~~L~~L~i~ 231 (232)
.++|++|++++|. +.......++.....+++|+.|++++| ++.+. + + ..+++|++|+++
T Consensus 198 ~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~ 264 (461)
T 1z7x_W 198 PCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIW 264 (461)
T ss_dssp CCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred CCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECc
Confidence 3467777776653 211000000011224678888888877 54411 1 1 136778877765
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.32 E-value=1.2e-06 Score=64.35 Aligned_cols=126 Identities=13% Similarity=0.151 Sum_probs=92.0
Q ss_pred CCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCCCCCCCCCceeeecccccceEeCccccCCCCCcc
Q 040143 91 QPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPAVGKLVSLKELTIRRMLVLRSIGSEICGKDCSTP 170 (232)
Q Consensus 91 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 170 (232)
..+.+|+.|+++++....+|.... ..++|++|++++|. +..++.++.+++|++|+++++ .+..++..++ ..
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~--~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~-----~~ 86 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGA--TLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNN-RICRIGEGLD-----QA 86 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGG--GTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSS-CCCEECSCHH-----HH
T ss_pred CCcCCceEEEeeCCCCchhHHhhh--cCCCCCEEECCCCC-CCcccccccCCCCCEEECCCC-cccccCcchh-----hc
Confidence 456799999999887766665432 34599999999986 556677999999999999886 5677764432 23
Q ss_pred CCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC-------CCCCcceEEeC
Q 040143 171 FQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD-------HLPALETLALS 231 (232)
Q Consensus 171 ~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~-------~l~~L~~L~i~ 231 (232)
+|+|++|+++++. +..+. .......+|+|+.|++++| .+. .+|. .+++|+.|++.
T Consensus 87 l~~L~~L~L~~N~-i~~~~---~~~~l~~l~~L~~L~l~~N-~i~-~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 87 LPDLTELILTNNS-LVELG---DLDPLASLKSLTYLCILRN-PVT-NKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp CTTCCEEECCSCC-CCCGG---GGGGGGGCTTCCEEECCSS-GGG-GSTTHHHHHHHHCTTCSEETTE
T ss_pred CCCCCEEECCCCc-CCcch---hhHhhhcCCCCCEEEecCC-CCC-CcHhHHHHHHHHCCccceeCCC
Confidence 8999999998863 34333 1113456999999999999 666 6664 36888887653
No 128
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.32 E-value=2e-08 Score=87.56 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=17.0
Q ss_pred CCccceEEEe-----CCCCCCCCCC-------CCCCCCCceeeecc
Q 040143 118 FSNMVTLKLI-----GCANCTSLPA-------VGKLVSLKELTIRR 151 (232)
Q Consensus 118 l~~L~~L~l~-----~c~~~~~l~~-------l~~L~~L~~L~l~~ 151 (232)
+++|++|+++ +|..++..|. +..+++|++|++++
T Consensus 396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 4566666666 3444443331 23445555555543
No 129
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.32 E-value=1.5e-07 Score=69.24 Aligned_cols=89 Identities=8% Similarity=0.039 Sum_probs=59.4
Q ss_pred ccceEEEeCCCCCC--CCCCCCCCCCCceeeecccccceEeCccccCCCCCc-cCCccceEeccCCcccccccccCcCCc
Q 040143 120 NMVTLKLIGCANCT--SLPAVGKLVSLKELTIRRMLVLRSIGSEICGKDCST-PFQSLETLCFSDLPELEFWDTGNQTGY 196 (232)
Q Consensus 120 ~L~~L~l~~c~~~~--~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~~p~L~~L~l~~~~~l~~~~~~~~~~~ 196 (232)
.|++|++++|. ++ .+..+..+++|++|++++|..+++........ .. .-++|++|++++|+++.+-. +. .
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~--~~~~~~~L~~L~Ls~C~~ITD~G---l~-~ 134 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQ--LENLQKSMLEMEIISCGNVTDKG---II-A 134 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHT--CHHHHHHCCEEEEESCTTCCHHH---HH-H
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHh--cccccCCCCEEEcCCCCcCCHHH---HH-H
Confidence 68888888886 33 23346788889999998887776543222110 00 02479999999998776522 21 2
Q ss_pred cCCCCcccEEeEcCCCCCC
Q 040143 197 VEIFPRLVELYIEWCPKLS 215 (232)
Q Consensus 197 ~~~lp~L~~L~l~~c~~l~ 215 (232)
...+|+|+.|++++|++++
T Consensus 135 L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GGGCTTCCEEEEESCTTCC
T ss_pred HhcCCCCCEEECCCCCCCC
Confidence 2358999999999998877
No 130
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.31 E-value=3.9e-06 Score=61.71 Aligned_cols=80 Identities=21% Similarity=0.273 Sum_probs=46.1
Q ss_pred CCCceEEEEeeCCCCC-CCccCCCCCCccceEEEeCCCCCCCCCC--CCCCCCCceeeecccccceEeCccccCCCCCcc
Q 040143 94 TNIKKLEITRYSGRKF-PIWLGDPSFSNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTP 170 (232)
Q Consensus 94 ~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 170 (232)
++|++|+++++....+ |..+. .+++|++|+++++. +..+|. ++.+++|++|+++++ .+..++...+. .
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~-----~ 103 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFD--HLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFD-----N 103 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT-----T
T ss_pred CCCcEEEeCCCCccccCHHHhc--CCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC-ccceeCHHHhc-----c
Confidence 5677777766655554 33333 36667777776653 445554 566777777777654 45554433222 2
Q ss_pred CCccceEeccCC
Q 040143 171 FQSLETLCFSDL 182 (232)
Q Consensus 171 ~p~L~~L~l~~~ 182 (232)
+++|++|++.+.
T Consensus 104 l~~L~~L~L~~N 115 (174)
T 2r9u_A 104 LKSLTHIYLYNN 115 (174)
T ss_dssp CTTCSEEECCSS
T ss_pred ccCCCEEEeCCC
Confidence 666777776653
No 131
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.29 E-value=2.7e-07 Score=76.00 Aligned_cols=161 Identities=16% Similarity=0.116 Sum_probs=87.3
Q ss_pred ccCcccCCCceEEEecCCCCCCc----hhhHHHHHhcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCC
Q 040143 57 SLGDKKGLEELSLGWGSPFHSRN----EIAEEKVLDMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANC 132 (232)
Q Consensus 57 ~l~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~ 132 (232)
++.++++|+.|.+.......... ......++ .++++|+.|.++++....++. + ..++|++|.+..|...
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll---~~~P~L~~L~L~g~~~l~l~~-~---~~~~L~~L~L~~~~l~ 206 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVL---DAMPLLNNLKIKGTNNLSIGK-K---PRPNLKSLEIISGGLP 206 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHH---HTCTTCCEEEEECCBTCBCCS-C---BCTTCSEEEEECSBCC
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHH---hcCCCCcEEEEeCCCCceecc-c---cCCCCcEEEEecCCCC
Confidence 35567888888874321100000 00111222 335789999998764444444 2 2678999999876522
Q ss_pred C-CCCCC--CCCCCCceeeeccccc-------ceEeCccccCCCCCccCCccceEeccCCcccccccccCcCCccCCCCc
Q 040143 133 T-SLPAV--GKLVSLKELTIRRMLV-------LRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPR 202 (232)
Q Consensus 133 ~-~l~~l--~~L~~L~~L~l~~~~~-------l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~ 202 (232)
. .+..+ ..+|+|++|+++...+ ++.+...+ ....||+|++|.+.+|........ .+ .....+|+
T Consensus 207 ~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l----~~~~~p~Lr~L~L~~~~i~~~~~~-~l-a~a~~~~~ 280 (362)
T 2ra8_A 207 DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF----SKDRFPNLKWLGIVDAEEQNVVVE-MF-LESDILPQ 280 (362)
T ss_dssp HHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS----CTTTCTTCCEEEEESCTTHHHHHH-HH-HHCSSGGG
T ss_pred hHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH----hcCCCCCcCEEeCCCCCCchHHHH-HH-HhCccCCC
Confidence 1 11112 3688999998853211 11111111 113489999999977653211100 01 12246889
Q ss_pred ccEEeEcCCCCCCC----CCCC---CCCCcceEEeC
Q 040143 203 LVELYIEWCPKLSG----KLPD---HLPALETLALS 231 (232)
Q Consensus 203 L~~L~l~~c~~l~~----~lp~---~l~~L~~L~i~ 231 (232)
|+.|+++.| .+.+ .++. ++++|++|+++
T Consensus 281 L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 281 LETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp CSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred CCEEECCCC-CCChHHHHHHHhhcccCCcceEEECC
Confidence 999999876 5652 1232 36788888775
No 132
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.28 E-value=1.7e-08 Score=85.45 Aligned_cols=110 Identities=18% Similarity=0.127 Sum_probs=49.3
Q ss_pred CccceEEEeCCCCCCC----CCC-CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcccccccccCc
Q 040143 119 SNMVTLKLIGCANCTS----LPA-VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQ 193 (232)
Q Consensus 119 ~~L~~L~l~~c~~~~~----l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~ 193 (232)
++|++|++++|..... ++. +..+++|++|+++++. +.+.........-....++|++|++++|. +.......+
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l 390 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSL 390 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHH
Confidence 3555555555542211 111 3445666666666552 32211110000000114577777777663 221000001
Q ss_pred CCccCCCCcccEEeEcCCCCCCC--------CCCCCCCCcceEEeC
Q 040143 194 TGYVEIFPRLVELYIEWCPKLSG--------KLPDHLPALETLALS 231 (232)
Q Consensus 194 ~~~~~~lp~L~~L~l~~c~~l~~--------~lp~~l~~L~~L~i~ 231 (232)
+.....+++|+.|++++| ++.+ .+|....+|++|++.
T Consensus 391 ~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~ 435 (461)
T 1z7x_W 391 AATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLY 435 (461)
T ss_dssp HHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHhCCCccEEECCCC-CCCHHHHHHHHHHhccCCcchhheeec
Confidence 112234678888888877 4541 234444566666654
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.28 E-value=4.2e-06 Score=61.21 Aligned_cols=80 Identities=24% Similarity=0.276 Sum_probs=46.4
Q ss_pred CCCceEEEEeeCCCCC-CCccCCCCCCccceEEEeCCCCCCCCCC--CCCCCCCceeeecccccceEeCccccCCCCCcc
Q 040143 94 TNIKKLEITRYSGRKF-PIWLGDPSFSNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTP 170 (232)
Q Consensus 94 ~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 170 (232)
++|++|+++++....+ |..+. .+++|++|+++++. +..+|. ++.+++|++|+++++ .+..++...+. .
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~--~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~-----~ 100 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFD--RLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFD-----N 100 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT-----T
T ss_pred CCCcEEEcCCCcCCccChhhhc--CcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCC-ccCEeCHHHhc-----C
Confidence 5677777766655554 33333 36677777776664 445554 566777777777654 45555433222 2
Q ss_pred CCccceEeccCC
Q 040143 171 FQSLETLCFSDL 182 (232)
Q Consensus 171 ~p~L~~L~l~~~ 182 (232)
+++|++|++.+.
T Consensus 101 l~~L~~L~L~~N 112 (170)
T 3g39_A 101 LKSLTHIWLLNN 112 (170)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCCCEEEeCCC
Confidence 667777776653
No 134
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.27 E-value=5.2e-08 Score=84.99 Aligned_cols=85 Identities=20% Similarity=0.308 Sum_probs=40.5
Q ss_pred cccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCC-CCCccCC--CCCCccceEEEeCCCCCCCCC
Q 040143 60 DKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRK-FPIWLGD--PSFSNMVTLKLIGCANCTSLP 136 (232)
Q Consensus 60 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p~~~~~--~~l~~L~~L~l~~c~~~~~l~ 136 (232)
.+++|++|++.+|... .......+.. .+++|++|++.++.... .+.|+.. ..+++|++|++++|. ..+.
T Consensus 128 ~~~~L~~L~L~~~~~~---~~~~l~~~~~---~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~ 199 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGF---STDGLAAIAA---TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVS 199 (594)
T ss_dssp HCTTCCEEEEESCEEE---EHHHHHHHHH---HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCC
T ss_pred hCCCCcEEeCCCcCCC---CHHHHHHHHH---hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCC
Confidence 4567777777655211 0111111222 24677777776543211 1222210 135577777777664 1221
Q ss_pred -----C-CCCCCCCceeeeccc
Q 040143 137 -----A-VGKLVSLKELTIRRM 152 (232)
Q Consensus 137 -----~-l~~L~~L~~L~l~~~ 152 (232)
. ...+++|++|++.+|
T Consensus 200 ~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 200 FSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECCTT
T ss_pred HHHHHHHHHhCCCCcEEecCCC
Confidence 1 233567777777665
No 135
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.22 E-value=9e-06 Score=70.84 Aligned_cols=130 Identities=24% Similarity=0.212 Sum_probs=92.9
Q ss_pred CCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCCCCCCC
Q 040143 63 GLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPAVGKLV 142 (232)
Q Consensus 63 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~l~~L~ 142 (232)
+++.|+++++.-.. +...+ +++|++|+++++....+| . .+++|++|++++|. +..+|.++.
T Consensus 60 ~L~~L~Ls~n~L~~---------lp~~l--~~~L~~L~Ls~N~l~~ip---~--~l~~L~~L~Ls~N~-l~~ip~l~~-- 120 (571)
T 3cvr_A 60 QFSELQLNRLNLSS---------LPDNL--PPQITVLEITQNALISLP---E--LPASLEYLDACDNR-LSTLPELPA-- 120 (571)
T ss_dssp TCSEEECCSSCCSC---------CCSCC--CTTCSEEECCSSCCSCCC---C--CCTTCCEEECCSSC-CSCCCCCCT--
T ss_pred CccEEEeCCCCCCc---------cCHhH--cCCCCEEECcCCCCcccc---c--ccCCCCEEEccCCC-CCCcchhhc--
Confidence 78899987663211 11222 368999999888777777 2 47899999999885 455777444
Q ss_pred CCceeeecccccceEeCccccCCCCCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCCCC
Q 040143 143 SLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPDHL 222 (232)
Q Consensus 143 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~~l 222 (232)
+|++|+++++ .+..++. .+++|+.|+++++. +..+. . .+++|+.|++++| ++. .+|.-.
T Consensus 121 ~L~~L~Ls~N-~l~~lp~---------~l~~L~~L~Ls~N~-l~~lp-----~---~l~~L~~L~Ls~N-~L~-~lp~l~ 179 (571)
T 3cvr_A 121 SLKHLDVDNN-QLTMLPE---------LPALLEYINADNNQ-LTMLP-----E---LPTSLEVLSVRNN-QLT-FLPELP 179 (571)
T ss_dssp TCCEEECCSS-CCSCCCC---------CCTTCCEEECCSSC-CSCCC-----C---CCTTCCEEECCSS-CCS-CCCCCC
T ss_pred CCCEEECCCC-cCCCCCC---------cCccccEEeCCCCc-cCcCC-----C---cCCCcCEEECCCC-CCC-Ccchhh
Confidence 9999999876 4555543 37899999998764 33322 1 5789999999999 788 677622
Q ss_pred CCcceEEeCC
Q 040143 223 PALETLALSD 232 (232)
Q Consensus 223 ~~L~~L~i~~ 232 (232)
++|+.|++++
T Consensus 180 ~~L~~L~Ls~ 189 (571)
T 3cvr_A 180 ESLEALDVST 189 (571)
T ss_dssp TTCCEEECCS
T ss_pred CCCCEEECcC
Confidence 6788888763
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.15 E-value=1.7e-08 Score=75.93 Aligned_cols=121 Identities=20% Similarity=0.246 Sum_probs=85.7
Q ss_pred CCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC-CCCCCCCceeeecccccceEeCccccCCCCCcc
Q 040143 92 PHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA-VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTP 170 (232)
Q Consensus 92 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 170 (232)
.+++|++|+++++....+| .+. .+++|++|++++|. +..+|. ++.+++|++|+++++ .+..++ .+ ..
T Consensus 46 ~l~~L~~L~ls~n~l~~l~-~~~--~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~------~~ 113 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEKIS-SLS--GMENLRILSLGRNL-IKKIENLDAVADTLEELWISYN-QIASLS-GI------EK 113 (198)
T ss_dssp HTTTCSEEECSEEEESCCC-CHH--HHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HH------HH
T ss_pred cCCCCCEEECCCCCCcccc-ccc--cCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCC-cCCcCC-cc------cc
Confidence 3589999999888766677 443 47899999999885 557887 667799999999886 455543 22 33
Q ss_pred CCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCCCC-------------CCCCcceEE
Q 040143 171 FQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKLPD-------------HLPALETLA 229 (232)
Q Consensus 171 ~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~lp~-------------~l~~L~~L~ 229 (232)
+++|++|+++++. +..+. .......+++|+.|++.+| .+.+..|. .+++|+.|+
T Consensus 114 l~~L~~L~l~~N~-i~~~~---~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 114 LVNLRVLYMSNNK-ITNWG---EIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHSSEEEESEEE-CCCHH---HHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCCEEECCCCc-CCchh---HHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 8999999998763 33322 1113456999999999998 55423332 367787764
No 137
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.15 E-value=5.6e-08 Score=79.98 Aligned_cols=169 Identities=15% Similarity=0.081 Sum_probs=77.1
Q ss_pred cCCCceEEEcccCCCCChhhhcccccCcc-cCCCceEEEecCCCCCCchhhHHHHHhcCCC-CCCCceEEEEeeCCCC--
Q 040143 33 TFLRGKLCISRLENANDSWDAREASLGDK-KGLEELSLGWGSPFHSRNEIAEEKVLDMLQP-HTNIKKLEITRYSGRK-- 108 (232)
Q Consensus 33 ~~L~~~L~i~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~-- 108 (232)
++|+ .|++.+..-...........+... ++|++|+++++.-. ......+...+.. .++|++|+++++....
T Consensus 80 ~~L~-~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~----~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 154 (362)
T 3goz_A 80 ANVT-SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS----SKSSSEFKQAFSNLPASITSLNLRGNDLGIKS 154 (362)
T ss_dssp TTCC-EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG----GSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC
T ss_pred CCcc-EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCC----cHHHHHHHHHHHhCCCceeEEEccCCcCCHHH
Confidence 6666 677654331111111111123333 57777777666321 1111222233333 2577777776654331
Q ss_pred ---CCCccCCCCC-CccceEEEeCCCCCCCCC-----CCCCC-CCCceeeecccccceEeCccccCCCCCcc-CCccceE
Q 040143 109 ---FPIWLGDPSF-SNMVTLKLIGCANCTSLP-----AVGKL-VSLKELTIRRMLVLRSIGSEICGKDCSTP-FQSLETL 177 (232)
Q Consensus 109 ---~p~~~~~~~l-~~L~~L~l~~c~~~~~l~-----~l~~L-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-~p~L~~L 177 (232)
++.++. .+ ++|++|++++|......+ .+... ++|++|+++++. +......... ..... .++|++|
T Consensus 155 ~~~l~~~l~--~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~-~~l~~~~~~L~~L 230 (362)
T 3goz_A 155 SDELIQILA--AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELA-YIFSSIPNHVVSL 230 (362)
T ss_dssp HHHHHHHHH--TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHH-HHHHHSCTTCCEE
T ss_pred HHHHHHHHh--cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHH-HHHhcCCCCceEE
Confidence 122222 12 377788777775322221 13344 478888887663 3321110000 00111 2478888
Q ss_pred eccCCcccccccccCcCCccCCCCcccEEeEcCC
Q 040143 178 CFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWC 211 (232)
Q Consensus 178 ~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c 211 (232)
+++++. +.......+......+++|+.|++++|
T Consensus 231 ~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 231 NLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp ECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred ECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccC
Confidence 887653 222110000011245678888888877
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.11 E-value=9.4e-06 Score=59.62 Aligned_cols=81 Identities=16% Similarity=0.148 Sum_probs=51.3
Q ss_pred cCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC--CC
Q 040143 62 KGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA--VG 139 (232)
Q Consensus 62 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--l~ 139 (232)
++|+.|+++++.-... ....+..+++|++|+++++....+|..... .+++|++|+++++. +..+|. ++
T Consensus 33 ~~L~~L~Ls~N~l~~~--------~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~-~l~~L~~L~L~~N~-l~~l~~~~~~ 102 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKL--------EPGVFDHLVNLQQLYFNSNKLTAIPTGVFD-KLTQLTQLDLNDNH-LKSIPRGAFD 102 (174)
T ss_dssp TTCSEEECCSSCCCCC--------CTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred CCCcEEEeCCCCcccc--------CHHHhcCCcCCCEEECCCCCCCccChhHhC-CcchhhEEECCCCc-cceeCHHHhc
Confidence 5677887776632210 012344567788888877766666654311 46788888887764 445654 77
Q ss_pred CCCCCceeeeccc
Q 040143 140 KLVSLKELTIRRM 152 (232)
Q Consensus 140 ~L~~L~~L~l~~~ 152 (232)
.+++|++|+++++
T Consensus 103 ~l~~L~~L~L~~N 115 (174)
T 2r9u_A 103 NLKSLTHIYLYNN 115 (174)
T ss_dssp TCTTCSEEECCSS
T ss_pred cccCCCEEEeCCC
Confidence 7888888888765
No 139
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.06 E-value=3.2e-05 Score=62.90 Aligned_cols=98 Identities=22% Similarity=0.090 Sum_probs=62.7
Q ss_pred EEEEee-CCCCCCCccCCCCCCccceEEEeCCCCCCCCCC--CCCCCCCceeeecccccceEeCccccCCCCCccCCccc
Q 040143 99 LEITRY-SGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLE 175 (232)
Q Consensus 99 L~l~~~-~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~ 175 (232)
++..+. ....+|. +. .+++|++|+|+++..+..+|. ++.|++|++|+++++ .+..++...++ .+++|+
T Consensus 13 v~~~~~n~l~~ip~-l~--~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~-----~l~~L~ 83 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LP--GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFH-----FTPRLS 83 (347)
T ss_dssp EECCSSCCCTTTTT-SC--SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGG-----SCSCCC
T ss_pred EEcCCCCCCCccCC-CC--CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhc-----CCcCCC
Confidence 444443 3445777 54 477889999886334666664 888899999998776 57776654333 288888
Q ss_pred eEeccCCcccccccccCcCCccCCCCcccEEeEcCC
Q 040143 176 TLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWC 211 (232)
Q Consensus 176 ~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c 211 (232)
.|+|++. .+..+. ........|+.|++.++
T Consensus 84 ~L~l~~N-~l~~~~-----~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 84 RLNLSFN-ALESLS-----WKTVQGLSLQELVLSGN 113 (347)
T ss_dssp EEECCSS-CCSCCC-----STTTCSCCCCEEECCSS
T ss_pred EEeCCCC-ccceeC-----HHHcccCCceEEEeeCC
Confidence 8888764 344333 12111223888888876
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.03 E-value=1.8e-05 Score=57.79 Aligned_cols=81 Identities=16% Similarity=0.136 Sum_probs=50.4
Q ss_pred cCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC--CC
Q 040143 62 KGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA--VG 139 (232)
Q Consensus 62 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--l~ 139 (232)
++++.|+++++.-... ....+..+++|++|+++++....+|..... .+++|++|+++++. +..+|. ++
T Consensus 30 ~~l~~L~L~~N~i~~~--------~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~-~l~~L~~L~L~~N~-l~~~~~~~~~ 99 (170)
T 3g39_A 30 TTTQVLYLYDNQITKL--------EPGVFDRLTQLTRLDLDNNQLTVLPAGVFD-KLTQLTQLSLNDNQ-LKSIPRGAFD 99 (170)
T ss_dssp TTCSEEECCSSCCCCC--------CTTTTTTCTTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred CCCcEEEcCCCcCCcc--------ChhhhcCcccCCEEECCCCCcCccChhhcc-CCCCCCEEECCCCc-cCEeCHHHhc
Confidence 5677777766532210 012244567788888877766666543211 46778888887764 445554 77
Q ss_pred CCCCCceeeeccc
Q 040143 140 KLVSLKELTIRRM 152 (232)
Q Consensus 140 ~L~~L~~L~l~~~ 152 (232)
.+++|++|+++++
T Consensus 100 ~l~~L~~L~L~~N 112 (170)
T 3g39_A 100 NLKSLTHIWLLNN 112 (170)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCCCCCEEEeCCC
Confidence 7888888888765
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.99 E-value=1.1e-07 Score=71.37 Aligned_cols=131 Identities=21% Similarity=0.195 Sum_probs=88.6
Q ss_pred ccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCC
Q 040143 57 SLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLP 136 (232)
Q Consensus 57 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~ 136 (232)
.+.++++|++|+++++.-.. ++.+..+++|++|+++++....+|.... .+++|++|++++|. +..+|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~----------l~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~~~L~~L~L~~N~-l~~l~ 109 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK----------ISSLSGMENLRILSLGRNLIKKIENLDA--VADTLEELWISYNQ-IASLS 109 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC----------CCCHHHHTTCCEEEEEEEEECSCSSHHH--HHHHCSEEEEEEEE-CCCHH
T ss_pred HHhcCCCCCEEECCCCCCcc----------ccccccCCCCCEEECCCCCcccccchhh--cCCcCCEEECcCCc-CCcCC
Confidence 46778999999998763221 1122334799999999987777776554 35799999999985 55677
Q ss_pred CCCCCCCCceeeecccccceEeCc-cccCCCCCccCCccceEeccCCccccccccc-----C-cCCccCCCCcccEEe
Q 040143 137 AVGKLVSLKELTIRRMLVLRSIGS-EICGKDCSTPFQSLETLCFSDLPELEFWDTG-----N-QTGYVEIFPRLVELY 207 (232)
Q Consensus 137 ~l~~L~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~-----~-~~~~~~~lp~L~~L~ 207 (232)
.++.+++|++|+++++. +..++. .. ...+++|++|++.+++ +...+.. . .......+|+|+.|+
T Consensus 110 ~~~~l~~L~~L~l~~N~-i~~~~~~~~-----l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 110 GIEKLVNLRVLYMSNNK-ITNWGEIDK-----LAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHSSEEEESEEE-CCCHHHHHH-----HTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccccCCCCCEEECCCCc-CCchhHHHH-----HhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEEC
Confidence 78889999999998763 444332 11 2338999999998864 2221100 0 000134689999987
No 142
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.91 E-value=1.7e-06 Score=63.63 Aligned_cols=87 Identities=18% Similarity=0.198 Sum_probs=54.9
Q ss_pred CCCceEEEEeeCCCCC-CCccCCCCCCccceEEEeCCCCCCCC--CCCCCC----CCCceeeecccccceEeCccccCCC
Q 040143 94 TNIKKLEITRYSGRKF-PIWLGDPSFSNMVTLKLIGCANCTSL--PAVGKL----VSLKELTIRRMLVLRSIGSEICGKD 166 (232)
Q Consensus 94 ~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~l--~~l~~L----~~L~~L~l~~~~~l~~~~~~~~~~~ 166 (232)
.+|+.|+++++..... -..+. .+++|++|.+++|..+++- ..++.+ ++|++|+|++|..+++......
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~--~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L--- 135 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHME--GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL--- 135 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGT--TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG---
T ss_pred ceEeEEeCcCCCccHHHHHHhc--CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH---
Confidence 3677777777653221 11122 4678888888888765532 224443 4688888888887766443322
Q ss_pred CCccCCccceEeccCCccccc
Q 040143 167 CSTPFQSLETLCFSDLPELEF 187 (232)
Q Consensus 167 ~~~~~p~L~~L~l~~~~~l~~ 187 (232)
..+|+|+.|++++|+.+.+
T Consensus 136 --~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 136 --HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp --GGCTTCCEEEEESCTTCCC
T ss_pred --hcCCCCCEEECCCCCCCCc
Confidence 2378888888888887664
No 143
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.86 E-value=1.2e-05 Score=66.13 Aligned_cols=160 Identities=19% Similarity=0.169 Sum_probs=87.8
Q ss_pred ccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCCC-CCccCC-------CCCCccceEEEeCCCCC
Q 040143 61 KKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRKF-PIWLGD-------PSFSNMVTLKLIGCANC 132 (232)
Q Consensus 61 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~-------~~l~~L~~L~l~~c~~~ 132 (232)
...++.|.+................+..+...+++|+.|.|.+...... ..|+.. ..+++|+.|.|.+|...
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 3567788886322110011112223334444457999999965322110 122210 14689999999987433
Q ss_pred CCCCCCCCCCCCceeeecccccceEeCc-cccCCCCCccCCccceEeccCCcc-------cccccccCcCCccCCCCccc
Q 040143 133 TSLPAVGKLVSLKELTIRRMLVLRSIGS-EICGKDCSTPFQSLETLCFSDLPE-------LEFWDTGNQTGYVEIFPRLV 204 (232)
Q Consensus 133 ~~l~~l~~L~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~~p~L~~L~l~~~~~-------l~~~~~~~~~~~~~~lp~L~ 204 (232)
.++.+ .+++|++|.+..|. +..-.. .+. ...+|+|+.|+++...+ ++.+. .....+.||+|+
T Consensus 186 -~l~~~-~~~~L~~L~L~~~~-l~~~~l~~l~----~~~lp~L~~L~L~~~~~~~~~~~~~~~l~---~~l~~~~~p~Lr 255 (362)
T 2ra8_A 186 -SIGKK-PRPNLKSLEIISGG-LPDSVVEDIL----GSDLPNLEKLVLYVGVEDYGFDGDMNVFR---PLFSKDRFPNLK 255 (362)
T ss_dssp -BCCSC-BCTTCSEEEEECSB-CCHHHHHHHH----HSBCTTCCEEEEECBCGGGTCCSCGGGTG---GGSCTTTCTTCC
T ss_pred -eeccc-cCCCCcEEEEecCC-CChHHHHHHH----HccCCCCcEEEEeccccccccchhHHHHH---HHHhcCCCCCcC
Confidence 34444 38999999997654 221111 111 12489999999853211 11111 001124599999
Q ss_pred EEeEcCCCCCCCC----C--CCCCCCcceEEeC
Q 040143 205 ELYIEWCPKLSGK----L--PDHLPALETLALS 231 (232)
Q Consensus 205 ~L~l~~c~~l~~~----l--p~~l~~L~~L~i~ 231 (232)
.|.+.+| .+.+. + ...+++|++|+++
T Consensus 256 ~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs 287 (362)
T 2ra8_A 256 WLGIVDA-EEQNVVVEMFLESDILPQLETMDIS 287 (362)
T ss_dssp EEEEESC-TTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred EEeCCCC-CCchHHHHHHHhCccCCCCCEEECC
Confidence 9999998 33211 1 1247889999885
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.85 E-value=5.3e-05 Score=61.57 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=62.8
Q ss_pred HHhcCCCCCCCceEEEEe-eCCCCCC-CccCCCCCCccceEEEeCCCCCCCCCC--CCCCCCCceeeecccccceEeCcc
Q 040143 86 VLDMLQPHTNIKKLEITR-YSGRKFP-IWLGDPSFSNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRMLVLRSIGSE 161 (232)
Q Consensus 86 ~~~~l~~~~~L~~L~l~~-~~~~~~p-~~~~~~~l~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~ 161 (232)
+.. +..+++|+.|++++ +....+| .++. .+++|++|+|+++. +..++. ++.|++|++|+|+++ .+..++..
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~--~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~ 98 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLR--GLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFN-ALESLSWK 98 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSC--SCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSS-CCSCCCST
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhc--cccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCC-ccceeCHH
Confidence 344 66778999999986 6655555 4454 58999999999985 555554 789999999999875 57777655
Q ss_pred ccCCCCCccCCccceEeccCC
Q 040143 162 ICGKDCSTPFQSLETLCFSDL 182 (232)
Q Consensus 162 ~~~~~~~~~~p~L~~L~l~~~ 182 (232)
.+.. ++ |+.|.+.+.
T Consensus 99 ~~~~-----~~-L~~l~l~~N 113 (347)
T 2ifg_A 99 TVQG-----LS-LQELVLSGN 113 (347)
T ss_dssp TTCS-----CC-CCEEECCSS
T ss_pred Hccc-----CC-ceEEEeeCC
Confidence 4431 33 999999764
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.61 E-value=7.4e-06 Score=67.65 Aligned_cols=90 Identities=16% Similarity=0.041 Sum_probs=38.2
Q ss_pred CccceEEEeCCCCCC----CCCC-CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcccccccccCc
Q 040143 119 SNMVTLKLIGCANCT----SLPA-VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQ 193 (232)
Q Consensus 119 ~~L~~L~l~~c~~~~----~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~ 193 (232)
++|++|++++|.... .+.. +...++|++|+++++. +.+.+..... ......++|+.|++++|. +.......+
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~-~~L~~~~~L~~L~Ls~N~-i~~~g~~~l 231 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLA-AQLDRNRQLQELNVAYNG-AGDTAALAL 231 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHH-HHGGGCSCCCEEECCSSC-CCHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHH-HHHhcCCCcCeEECCCCC-CCHHHHHHH
Confidence 456666666664211 1111 3455666666666553 3221100000 011224567777766653 211000000
Q ss_pred CCccCCCCcccEEeEcCC
Q 040143 194 TGYVEIFPRLVELYIEWC 211 (232)
Q Consensus 194 ~~~~~~lp~L~~L~l~~c 211 (232)
.......++|+.|++++|
T Consensus 232 ~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHHHCSSCCEEECTTS
T ss_pred HHHHHhCCCCCEEeccCC
Confidence 001113466777777766
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.47 E-value=0.012 Score=47.26 Aligned_cols=97 Identities=18% Similarity=0.198 Sum_probs=66.7
Q ss_pred CCccceEEEeCCCCCCCCCC--CCCCCCCceeeecccccceEeCccccCCCCCccCCccc-eEeccCCcccccccccCcC
Q 040143 118 FSNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLE-TLCFSDLPELEFWDTGNQT 194 (232)
Q Consensus 118 l~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~-~L~l~~~~~l~~~~~~~~~ 194 (232)
.++|+++++..+. +..+|. +..+++|+.+.+.+. ++.++...+. ..++|+ .+.+.+ ++..+. .
T Consensus 225 ~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~-----~~~~L~~~l~l~~--~l~~I~---~- 290 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFS-----NCGRLAGTLELPA--SVTAIE---F- 290 (329)
T ss_dssp CTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-----TCTTCCEEEEECT--TCCEEC---T-
T ss_pred cCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceehHHHhh-----CChhccEEEEEcc--cceEEc---h-
Confidence 5789999998754 567776 888999999999763 7777754333 277888 888865 444433 1
Q ss_pred CccCCCCcccEEeEcCCCCCCCCCCC----CCCCcceEEe
Q 040143 195 GYVEIFPRLVELYIEWCPKLSGKLPD----HLPALETLAL 230 (232)
Q Consensus 195 ~~~~~lp~L~~L~l~~c~~l~~~lp~----~l~~L~~L~i 230 (232)
..-..+++|+.+++... ++. .++. ..++|++++.
T Consensus 291 ~aF~~c~~L~~l~l~~n-~i~-~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 291 GAFMGCDNLRYVLATGD-KIT-TLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTTTCTTEEEEEECSS-CCC-EECTTTTCTTCCCCEEEC
T ss_pred hhhhCCccCCEEEeCCC-ccC-ccchhhhcCCcchhhhcc
Confidence 12234789999998766 666 5553 4567777653
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.12 E-value=0.017 Score=46.28 Aligned_cols=101 Identities=11% Similarity=0.054 Sum_probs=67.7
Q ss_pred CCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCCCCCCCC--CCCCCCCc-eeeecccccceEeCccccCCCCCc
Q 040143 93 HTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCANCTSLPA--VGKLVSLK-ELTIRRMLVLRSIGSEICGKDCST 169 (232)
Q Consensus 93 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--l~~L~~L~-~L~l~~~~~l~~~~~~~~~~~~~~ 169 (232)
.++|+.+++.++....+|...-. ..++|+++.+..+ +..++. +..+++|+ .+.+.+ .++.++...+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~-~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~----- 294 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFA-QKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFM----- 294 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTT-TCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTT-----
T ss_pred cCCCeEEECCCCCcceecHhhhh-CCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhh-----
Confidence 46899999877656666655332 4679999999874 666765 88999999 999976 67777644332
Q ss_pred cCCccceEeccCCcccccccccCcCCccCCCCcccEEeE
Q 040143 170 PFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYI 208 (232)
Q Consensus 170 ~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l 208 (232)
..++|+.+.+... ++..+. . ..-..+++|+.++.
T Consensus 295 ~c~~L~~l~l~~n-~i~~I~---~-~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 295 GCDNLRYVLATGD-KITTLG---D-ELFGNGVPSKLIYK 328 (329)
T ss_dssp TCTTEEEEEECSS-CCCEEC---T-TTTCTTCCCCEEEC
T ss_pred CCccCCEEEeCCC-ccCccc---h-hhhcCCcchhhhcc
Confidence 2788999988542 333333 1 11234677777753
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=94.80 E-value=0.00014 Score=59.89 Aligned_cols=139 Identities=16% Similarity=0.074 Sum_probs=77.6
Q ss_pred cCCCceEEEcccCCCCChhhhcccccCcccCCCceEEEecCCCCCCchhhHHHHHhcC-CCCCCCceEEEEeeCCCC---
Q 040143 33 TFLRGKLCISRLENANDSWDAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDML-QPHTNIKKLEITRYSGRK--- 108 (232)
Q Consensus 33 ~~L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~--- 108 (232)
.+|+ .|++.+.. +.+ .........+.+|++|++++|.-. ......+...+ .+.++|+.|+++++....
T Consensus 101 ~~L~-~L~Ls~n~-l~~--~~~~~l~~~L~~L~~L~Ls~n~l~----~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~ 172 (372)
T 3un9_A 101 HALD-EVNLASCQ-LDP--AGLRTLLPVFLRARKLGLQLNSLG----PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGV 172 (372)
T ss_dssp SCEE-EEECTTCC-CCH--HHHHHTHHHHHTEEEEECCSSCCC----HHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHH
T ss_pred CCce-EEEecCCC-CCH--HHHHHHHHHHHhccHhhcCCCCCC----HHHHHHHHHHHHhcCCccceeeCCCCCCChHHH
Confidence 4666 77776542 211 111111223567889999877421 22222233333 245789999998875432
Q ss_pred --CCCccCCCCCCccceEEEeCCCCCC----CCCC-CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccC
Q 040143 109 --FPIWLGDPSFSNMVTLKLIGCANCT----SLPA-VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSD 181 (232)
Q Consensus 109 --~p~~~~~~~l~~L~~L~l~~c~~~~----~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~ 181 (232)
++..+. ..++|++|++++|.... .+.. +...++|++|++++|. +.+.+..... ......++|++|++++
T Consensus 173 ~~l~~~L~--~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~-~~L~~~~~L~~L~Ls~ 248 (372)
T 3un9_A 173 AVLMEGLA--GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALA-RAAREHPSLELLHLYF 248 (372)
T ss_dssp HHHHHHHH--TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHH-HHHHHCSSCCEEECTT
T ss_pred HHHHHHHh--cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHH-HHHHhCCCCCEEeccC
Confidence 222222 35789999999886321 1122 5667899999998874 3322111110 0112358899999988
Q ss_pred Cc
Q 040143 182 LP 183 (232)
Q Consensus 182 ~~ 183 (232)
+.
T Consensus 249 N~ 250 (372)
T 3un9_A 249 NE 250 (372)
T ss_dssp SS
T ss_pred CC
Confidence 74
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.43 E-value=0.002 Score=47.54 Aligned_cols=117 Identities=18% Similarity=0.093 Sum_probs=51.3
Q ss_pred cCcccCCCceEEEec-CCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCC-----CCCccCCCCCCccceEEEeCCCC
Q 040143 58 LGDKKGLEELSLGWG-SPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRK-----FPIWLGDPSFSNMVTLKLIGCAN 131 (232)
Q Consensus 58 l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L~~L~l~~c~~ 131 (232)
+...+.|++|+++++ .- .......+.+.+...++|++|+++++.... +...+. ..++|++|+|++|..
T Consensus 32 l~~~~~L~~L~L~~n~~i----~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~--~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNI----PVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK--VNNTLKSLNVESNFI 105 (185)
T ss_dssp HTTCTTCCEEECTTCTTC----CHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH--HCSSCCEEECCSSCC
T ss_pred HhcCCCCCEEEecCCCCC----CHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHH--hCCCcCEEECcCCcC
Confidence 444556666666543 21 112222333444444566666665543221 111111 124566666666542
Q ss_pred CCC----CC-CCCCCCCCceeee--cccccceEeCccccCCCCCccCCccceEeccCC
Q 040143 132 CTS----LP-AVGKLVSLKELTI--RRMLVLRSIGSEICGKDCSTPFQSLETLCFSDL 182 (232)
Q Consensus 132 ~~~----l~-~l~~L~~L~~L~l--~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~ 182 (232)
... +. .+...++|++|++ +++ .+......... ..+...+.|++|++.++
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~-~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIA-NMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHH-HHHHHCSSCCEEECCCS
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHH-HHHHhCCCcCEEeccCC
Confidence 210 11 1445567777777 433 22221100000 01122466777777665
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.40 E-value=0.0056 Score=47.94 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=16.2
Q ss_pred CCccceEEEeCCCCCCCCC---C-CCCCCCCceeeeccc
Q 040143 118 FSNMVTLKLIGCANCTSLP---A-VGKLVSLKELTIRRM 152 (232)
Q Consensus 118 l~~L~~L~l~~c~~~~~l~---~-l~~L~~L~~L~l~~~ 152 (232)
+++|+.|+++.+. +..++ . ++.+++|++|+++++
T Consensus 169 l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 169 IPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGN 206 (267)
T ss_dssp CTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred CCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCC
Confidence 4455555555543 22222 2 234556666666543
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.00 E-value=0.038 Score=43.15 Aligned_cols=81 Identities=20% Similarity=0.255 Sum_probs=49.7
Q ss_pred CCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCCC
Q 040143 139 GKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGKL 218 (232)
Q Consensus 139 ~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~l 218 (232)
..+|+|+.|+++++ .+..++. +- .....+|+|+.|++++. .+..+. .......+ +|+.|.+.+++ +.+.+
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~-l~--~~~~~l~~L~~L~Ls~N-~i~~~~---~l~~l~~l-~L~~L~L~~Np-l~~~~ 236 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDD-MS--SIVQKAPNLKILNLSGN-ELKSER---ELDKIKGL-KLEELWLDGNS-LCDTF 236 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGG-GT--THHHHSTTCCEEECTTS-CCCSGG---GGGGGTTS-CCSEEECTTST-TGGGC
T ss_pred hhCCCCCEEECCCC-CCCCCcc-ch--hHHhhCCCCCEEECCCC-ccCCch---hhhhcccC-CcceEEccCCc-Ccccc
Confidence 45889999999876 4554421 00 01124999999999874 344432 11111123 99999999985 44345
Q ss_pred CC----------CCCCcceEE
Q 040143 219 PD----------HLPALETLA 229 (232)
Q Consensus 219 p~----------~l~~L~~L~ 229 (232)
|. .+|+|+.|+
T Consensus 237 ~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 237 RDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp SSHHHHHHHHHHHCTTCCEES
T ss_pred CcchhHHHHHHHHCcccCeEC
Confidence 52 477887764
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=91.61 E-value=1.1 Score=36.86 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=15.6
Q ss_pred CCcccEEeEcCCCCCCCCCCC----CCCCcceEEe
Q 040143 200 FPRLVELYIEWCPKLSGKLPD----HLPALETLAL 230 (232)
Q Consensus 200 lp~L~~L~l~~c~~l~~~lp~----~l~~L~~L~i 230 (232)
+++|+.+.+.. +++ .++. ...+|+++.+
T Consensus 299 c~~L~~l~l~~--~i~-~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 299 CPKLARFEIPE--SIR-ILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp CTTCCEECCCT--TCC-EECTTTTTTCCSCCEEEE
T ss_pred CccCCeEEeCC--ceE-EEhhhhhcCCCCccEEEE
Confidence 56677766652 344 4432 3466777665
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=89.52 E-value=0.062 Score=39.32 Aligned_cols=119 Identities=13% Similarity=0.083 Sum_probs=70.5
Q ss_pred hhhcccCCCceEEEcccCCCCChh-hhcccccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCC
Q 040143 28 DLRNLTFLRGKLCISRLENANDSW-DAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSG 106 (232)
Q Consensus 28 ~L~~L~~L~~~L~i~~~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 106 (232)
.+...+.|+ .|.+.+...+.+.. ......+...++|++|+++++.- ...+...+.+.+...++|++|+++++..
T Consensus 31 ~l~~~~~L~-~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i----~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 31 IQNNDPDLE-EVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRS----NDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHTTCTTCC-EEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCC----CHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHhcCCCCC-EEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCC----ChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 345667788 88887542333211 12223456668899999987742 2223333444444457899999987654
Q ss_pred CC-----CCCccCCCCCCccceEEE--eCCCCCCC----CCC-CCCCCCCceeeecccc
Q 040143 107 RK-----FPIWLGDPSFSNMVTLKL--IGCANCTS----LPA-VGKLVSLKELTIRRML 153 (232)
Q Consensus 107 ~~-----~p~~~~~~~l~~L~~L~l--~~c~~~~~----l~~-l~~L~~L~~L~l~~~~ 153 (232)
.. +...+. ..++|++|++ ++|..... +.. +...++|++|+++++.
T Consensus 106 ~~~g~~~l~~~L~--~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 106 SGSGILALVEALQ--SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CHHHHHHHHHGGG--GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CHHHHHHHHHHHH--hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 32 223332 2468999999 66643211 111 4456899999998763
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=89.28 E-value=8.1 Score=31.69 Aligned_cols=97 Identities=9% Similarity=0.147 Sum_probs=47.8
Q ss_pred CCccceEEEeCCCCC----CCCCC--CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCccccccccc
Q 040143 118 FSNMVTLKLIGCANC----TSLPA--VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWDTG 191 (232)
Q Consensus 118 l~~L~~L~l~~c~~~----~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~ 191 (232)
.++|+.+.+.++... ..++. +..+++|+.+.+.+ .++.++...+. ..++|+.+.+.. ++..+..+
T Consensus 270 c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~-----~c~~L~~l~lp~--~l~~I~~~ 340 (401)
T 4fdw_A 270 CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLG-----GNRKVTQLTIPA--NVTQINFS 340 (401)
T ss_dssp CTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTT-----TCCSCCEEEECT--TCCEECTT
T ss_pred CCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhc-----CCCCccEEEECc--cccEEcHH
Confidence 456666666553321 12332 55666666666642 35555433222 146677776643 23322210
Q ss_pred CcCCccCCCCcccEEeEcCCCCCCCCCCC----CC-CCcceEEe
Q 040143 192 NQTGYVEIFPRLVELYIEWCPKLSGKLPD----HL-PALETLAL 230 (232)
Q Consensus 192 ~~~~~~~~lp~L~~L~l~~c~~l~~~lp~----~l-~~L~~L~i 230 (232)
.-... +|+.+.+..+ .+. .++. .+ .+++++.+
T Consensus 341 ----aF~~~-~L~~l~l~~n-~~~-~l~~~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 341 ----AFNNT-GIKEVKVEGT-TPP-QVFEKVWYGFPDDITVIRV 377 (401)
T ss_dssp ----SSSSS-CCCEEEECCS-SCC-BCCCSSCCCSCTTCCEEEE
T ss_pred ----hCCCC-CCCEEEEcCC-CCc-ccccccccCCCCCccEEEe
Confidence 11224 7888888776 443 3332 23 35666665
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=85.38 E-value=0.86 Score=31.13 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=21.9
Q ss_pred CccceEEEeCCCCCCCCCC--CCCCCCCceeeeccc
Q 040143 119 SNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRM 152 (232)
Q Consensus 119 ~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~ 152 (232)
++|++|+|+++. +..+|. +..+++|+.|+|.++
T Consensus 31 ~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 31 VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSS
T ss_pred cCCCEEECCCCc-CCccChhhhhhccccCEEEecCC
Confidence 467777777654 556665 566777777777654
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=67.47 E-value=2.5 Score=28.77 Aligned_cols=38 Identities=18% Similarity=0.097 Sum_probs=26.4
Q ss_pred CCCCceEEEEeeCCCCCCCccCCCCCCccceEEEeCCCC
Q 040143 93 HTNIKKLEITRYSGRKFPIWLGDPSFSNMVTLKLIGCAN 131 (232)
Q Consensus 93 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~ 131 (232)
+.+|+.|+++++....+|..... .+++|++|+|.+++.
T Consensus 30 p~~l~~L~Ls~N~l~~l~~~~f~-~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 30 PVDTTELVLTGNNLTALPPGLLD-ALPALRTAHLGANPW 67 (130)
T ss_dssp CTTCSEEECTTSCCSSCCTTTGG-GCTTCCEEECCSSCC
T ss_pred CcCCCEEECCCCcCCccChhhhh-hccccCEEEecCCCe
Confidence 35788888887776666654321 467889999887764
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=50.12 E-value=75 Score=25.45 Aligned_cols=11 Identities=9% Similarity=-0.088 Sum_probs=6.8
Q ss_pred CCcccEEeEcC
Q 040143 200 FPRLVELYIEW 210 (232)
Q Consensus 200 lp~L~~L~l~~ 210 (232)
+++|+.+.+.+
T Consensus 356 C~~L~~i~~~~ 366 (394)
T 4gt6_A 356 CTALNNIEYSG 366 (394)
T ss_dssp CTTCCEEEESS
T ss_pred CCCCCEEEECC
Confidence 56666666654
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=48.17 E-value=79 Score=25.03 Aligned_cols=53 Identities=9% Similarity=0.253 Sum_probs=25.0
Q ss_pred CccceEEEeCCCCCCCCCC--CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEec
Q 040143 119 SNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCF 179 (232)
Q Consensus 119 ~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l 179 (232)
.+|+.+.+.. .+..++. +..+++|+.+.+.+ ..++.++...+.. ..+|+.+.|
T Consensus 263 ~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~-----c~~L~~i~l 317 (379)
T 4h09_A 263 TALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMD-----CVKLSSVTL 317 (379)
T ss_dssp TTCCEEEECC--CCSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTT-----CTTCCEEEC
T ss_pred ehhccccccc--cceeccccccccccccccccccc-cccceehhhhhcC-----CCCCCEEEc
Confidence 3455555532 1233332 55566777766643 2345554332211 345565555
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=36.41 E-value=1.1e+02 Score=24.49 Aligned_cols=10 Identities=10% Similarity=0.062 Sum_probs=5.1
Q ss_pred CCcccEEeEc
Q 040143 200 FPRLVELYIE 209 (232)
Q Consensus 200 lp~L~~L~l~ 209 (232)
+++|+.+.+.
T Consensus 365 C~~L~~i~lp 374 (394)
T 4fs7_A 365 CINLKKVELP 374 (394)
T ss_dssp CTTCCEEEEE
T ss_pred CCCCCEEEEC
Confidence 4455555553
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=32.74 E-value=26 Score=25.68 Aligned_cols=91 Identities=11% Similarity=0.106 Sum_probs=48.4
Q ss_pred ccCCCceEEEcccCCCCChh-hhcccccCcccCCCceEEEecCCCCCCchhhHHHHHhcCCCCCCCceEEEEeeCCCC--
Q 040143 32 LTFLRGKLCISRLENANDSW-DAREASLGDKKGLEELSLGWGSPFHSRNEIAEEKVLDMLQPHTNIKKLEITRYSGRK-- 108 (232)
Q Consensus 32 L~~L~~~L~i~~~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-- 108 (232)
=..|+ .|.+.+...+.+.. ..+...|+.-+.|+.|+++++.- ....-..+-+.|..-+.|+.|++..+....
T Consensus 40 n~~L~-~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~i----gd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 40 DTDLK-EVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAI----SDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp CSSCC-EEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCC----BHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred CCCcc-EEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCC----ChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 35577 78776443332211 12223355557799999977632 122222233334334789999997654331
Q ss_pred ---CCCccCCCCCCccceEEEeCC
Q 040143 109 ---FPIWLGDPSFSNMVTLKLIGC 129 (232)
Q Consensus 109 ---~p~~~~~~~l~~L~~L~l~~c 129 (232)
+-..+. .=+.|++|+|+++
T Consensus 115 a~ala~aL~--~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 115 LARLLRSTL--VTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHTT--TTCCCSEEECCCC
T ss_pred HHHHHHHHh--hCCceeEEECCCC
Confidence 112222 1246899999764
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=31.96 E-value=1.9e+02 Score=22.95 Aligned_cols=78 Identities=13% Similarity=0.178 Sum_probs=37.0
Q ss_pred CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEeccCCcccccccccCcCCccCCCCcccEEeEcCCCCCCCC
Q 040143 138 VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCFSDLPELEFWDTGNQTGYVEIFPRLVELYIEWCPKLSGK 217 (232)
Q Consensus 138 l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~~ 217 (232)
+...++|+.+.+. ..+..++...+. ...+|+.+.|.. +++.+.. ..-..+.+|+.+.+.. +++ .
T Consensus 284 F~~c~~L~~i~l~--~~i~~I~~~aF~-----~c~~L~~i~lp~--~v~~I~~----~aF~~C~~L~~i~ip~--sv~-~ 347 (394)
T 4gt6_A 284 FMNCPALQDIEFS--SRITELPESVFA-----GCISLKSIDIPE--GITQILD----DAFAGCEQLERIAIPS--SVT-K 347 (394)
T ss_dssp TTTCTTCCEEECC--TTCCEECTTTTT-----TCTTCCEEECCT--TCCEECT----TTTTTCTTCCEEEECT--TCC-B
T ss_pred cccccccccccCC--CcccccCceeec-----CCCCcCEEEeCC--cccEehH----hHhhCCCCCCEEEECc--ccC-E
Confidence 3445556665553 234444433221 145677776642 2222220 0112357788888742 244 4
Q ss_pred CCC----CCCCcceEEeC
Q 040143 218 LPD----HLPALETLALS 231 (232)
Q Consensus 218 lp~----~l~~L~~L~i~ 231 (232)
+.. ...+|+++.+.
T Consensus 348 I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 348 IPESAFSNCTALNNIEYS 365 (394)
T ss_dssp CCGGGGTTCTTCCEEEES
T ss_pred EhHhHhhCCCCCCEEEEC
Confidence 432 34566666654
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=29.94 E-value=1.4e+02 Score=23.55 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=34.5
Q ss_pred CCccceEEEeCCCCCCCCCC--CCCCCCCceeeecccccceEeCccccCCCCCccCCccceEec
Q 040143 118 FSNMVTLKLIGCANCTSLPA--VGKLVSLKELTIRRMLVLRSIGSEICGKDCSTPFQSLETLCF 179 (232)
Q Consensus 118 l~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l 179 (232)
.++|+.+.+..+ .++.++. +..+++|+.+.+-. .++.++...+. ...+|+.+.+
T Consensus 285 c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~-----~C~~L~~i~i 340 (379)
T 4h09_A 285 CSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFK-----NCKALSTISY 340 (379)
T ss_dssp CTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT-----TCTTCCCCCC
T ss_pred cccccccccccc-ccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhh-----CCCCCCEEEE
Confidence 568999998653 2445554 77889999998843 46666543221 1456666665
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=28.91 E-value=92 Score=24.90 Aligned_cols=30 Identities=17% Similarity=0.265 Sum_probs=14.8
Q ss_pred CCccceEEEeCCCCCCCCCC--CCCCCCCceeee
Q 040143 118 FSNMVTLKLIGCANCTSLPA--VGKLVSLKELTI 149 (232)
Q Consensus 118 l~~L~~L~l~~c~~~~~l~~--l~~L~~L~~L~l 149 (232)
.++|+.+.+... ++.++. +..+++|+.+.+
T Consensus 296 ~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~l 327 (394)
T 4fs7_A 296 CSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDL 327 (394)
T ss_dssp CTTCCEEEECTT--CCEECTTTTTTCTTCCEECC
T ss_pred cccccccccccc--cceechhhhcCCCCCCEEEe
Confidence 345666665431 233332 445556666655
Done!