BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040144
(289 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 85/357 (23%), Positives = 132/357 (36%), Gaps = 98/357 (27%)
Query: 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYV 61
G L++L S +I G + + NL+FLD+SS + +L S L+HLD+
Sbjct: 178 GELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNN--FSTGIPFLGDCSALQHLDISGN 233
Query: 62 NLSIAFDWLMVANKLLSLVELRLSNCQLQHFS------PLATVNF--------------- 100
LS F + + + EL+L N F PL ++ +
Sbjct: 234 KLSGDF-----SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDF 288
Query: 101 -----SSLTMLDLSHNQF------------------------DNSFILSWVFALSHLPFL 131
+LT LDLS N F + + + L L
Sbjct: 289 LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348
Query: 132 DLGFNNFQGTIDLEALGNLT-SINRLDLS-------------------------LNTGLT 165
DL FN F G + E+L NL+ S+ LDLS N G T
Sbjct: 349 DLSFNEFSGELP-ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Query: 166 GRIPRSMALCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPW-- 223
G+IP +++ C+ + ++L S + S G + LG L L N + G IP
Sbjct: 408 GKIPPTLSNCS-ELVSLHLSFNYLS----GTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462
Query: 224 ----SFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVAL 276
+ E I D +N ++W + N+LT E+ WI + +A+
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK-WIGRLENLAI 518
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 90/223 (40%), Gaps = 34/223 (15%)
Query: 1 MGNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRY 60
M L+ L+ S G +P+ L NLS SLL LDL
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLS-----------------------ASLLT-LDLSS 377
Query: 61 VNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILS 120
N S + N +L EL L N P N S L L LS N + I S
Sbjct: 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT-IPS 436
Query: 121 WVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMALC-NLKS 179
+ +LS L L L N +G I E + + ++ L L N LTG IP ++ C NL
Sbjct: 437 SLGSLSKLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFND-LTGEIPSGLSNCTNLNW 494
Query: 180 INLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIP 222
I+L ++ + G + +G+ NL L NNS G IP
Sbjct: 495 ISLS------NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 33/132 (25%)
Query: 91 HFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNL 150
H SP N S+ LD+S+N + +I + ++ +L L+LG N+ G+I E +G+L
Sbjct: 623 HTSPTFDNN-GSMMFLDMSYNML-SGYIPKEIGSMPYLFILNLGHNDISGSIPDE-VGDL 679
Query: 151 TSINRLDLSLNTGLTGRIPRSMALCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTF 210
+N LDLS N L GRIP++M+ +L M L
Sbjct: 680 RGLNILDLSSNK-LDGRIPQAMS-----------ALTM------------------LTEI 709
Query: 211 NLVNNSIVGFIP 222
+L NN++ G IP
Sbjct: 710 DLSNNNLSGPIP 721
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 70/161 (43%), Gaps = 34/161 (21%)
Query: 14 ICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNL--SIAFDWLM 71
+ G IP LG+LS L+ L L WL+ + +L YV ++ D+
Sbjct: 430 LSGTIPSSLGSLSKLRDLKL------------WLNMLEGEIPQELMYVKTLETLILDF-- 475
Query: 72 VANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFL 131
N L + LSNC ++L + LS+N+ I W+ L +L L
Sbjct: 476 --NDLTGEIPSGLSNC-------------TNLNWISLSNNRLTGE-IPKWIGRLENLAIL 519
Query: 132 DLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSM 172
L N+F G I E LG+ S+ LDL+ N G IP +M
Sbjct: 520 KLSNNSFSGNIPAE-LGDCRSLIWLDLNTNL-FNGTIPAAM 558
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 102 SLTMLDLSHNQFDNSFILSWVFA--LSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLS 159
SL +LDLS N + ++ WV + L L + N G +D+ NL LD+S
Sbjct: 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNL---EFLDVS 208
Query: 160 LNTGLTGRIPRSMALCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVG 219
N TG IP L + + LD+ + + G + + L N+ +N VG
Sbjct: 209 SNNFSTG-IPF------LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261
Query: 220 FIP 222
IP
Sbjct: 262 PIP 264
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 101/230 (43%), Gaps = 25/230 (10%)
Query: 4 LRYLNFSKTRICGIIPQ--QLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYV 61
L L+ S+ + G + LG+ S L+FL++SS L + ++ LE LDL
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161
Query: 62 NLSIA--FDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFS---SLTMLDLSHNQFDNS 116
++S A W++ ++ L L +S ++ V+ S +L LD+S N F S
Sbjct: 162 SISGANVVGWVL-SDGCGELKHLAISGNKIS-----GDVDVSRCVNLEFLDVSSNNF--S 213
Query: 117 FILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMALCN 176
+ ++ S L LD+ N G A+ T + L++S N G IP + L +
Sbjct: 214 TGIPFLGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQ-FVGPIP-PLPLKS 270
Query: 177 LKSINLQESLDMRSSSIYGHLTDQL-GQFRNLVTFNLVNNSIVGFIPWSF 225
L+ ++L E + G + D L G L +L N G +P F
Sbjct: 271 LQYLSLAE------NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 1 MGNLRYL---NFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFL--WLSGISLLEH 55
+G++ YL N I G IP ++G+L L LDLSS L D + +S +++L
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL---DGRIPQAMSALTMLTE 708
Query: 56 LDLRYVNLS 64
+DL NLS
Sbjct: 709 IDLSNNNLS 717
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 84/360 (23%), Positives = 134/360 (37%), Gaps = 104/360 (28%)
Query: 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYV 61
G L++L S +I G + + NL+FLD+SS + +L S L+HLD+
Sbjct: 175 GELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNN--FSTGIPFLGDCSALQHLDISGN 230
Query: 62 NLSIAFDWLMVANKLLSLVELRLSNCQLQHFS------PLATVNF--------------- 100
LS F + + + EL+L N F PL ++ +
Sbjct: 231 KLSGDF-----SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDF 285
Query: 101 -----SSLTMLDLSHNQF------------------------DNSFILSWVFALSHLPFL 131
+LT LDLS N F + + + L L
Sbjct: 286 LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 345
Query: 132 DLGFNNFQGTIDLEALGNLT-SINRLDLS-------------------------LNTGLT 165
DL FN F G + E+L NL+ S+ LDLS N G T
Sbjct: 346 DLSFNEFSGELP-ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 404
Query: 166 GRIPRSMALCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF 225
G+IP +++ C+ + ++L S + S G + LG L L N + G IP
Sbjct: 405 GKIPPTLSNCS-ELVSLHLSFNYLS----GTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 459
Query: 226 ELHIYDNKLNVTLFELH---------FANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVAL 276
+Y L + + + +N ++W + N+LT E+ WI + +A+
Sbjct: 460 ---MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK-WIGRLENLAI 515
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 90/223 (40%), Gaps = 34/223 (15%)
Query: 1 MGNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRY 60
M L+ L+ S G +P+ L NLS SLL LDL
Sbjct: 339 MRGLKVLDLSFNEFSGELPESLTNLS-----------------------ASLLT-LDLSS 374
Query: 61 VNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILS 120
N S + N +L EL L N P N S L L LS N + I S
Sbjct: 375 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT-IPS 433
Query: 121 WVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMALC-NLKS 179
+ +LS L L L N +G I E + + ++ L L N LTG IP ++ C NL
Sbjct: 434 SLGSLSKLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFND-LTGEIPSGLSNCTNLNW 491
Query: 180 INLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIP 222
I+L ++ + G + +G+ NL L NNS G IP
Sbjct: 492 ISLS------NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 97/242 (40%), Gaps = 57/242 (23%)
Query: 3 NLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYL---LYVDNFLWLSGISLLEHLDLR 59
NL L S G IP +LG+ +L +LDL++ + F I+ R
Sbjct: 512 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 571
Query: 60 YVNLSIAFDWLMV----ANKLLSLVELRLSN---------CQLQ------HFSPLATVNF 100
YV I D + A LL +R C + H SP N
Sbjct: 572 YV--YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN- 628
Query: 101 SSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSL 160
S+ LD+S+N + +I + ++ +L L+LG N+ G+I E +G+L +N LDLS
Sbjct: 629 GSMMFLDMSYNML-SGYIPKEIGSMPYLFILNLGHNDISGSIPDE-VGDLRGLNILDLSS 686
Query: 161 NTGLTGRIPRSMALCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGF 220
N L GRIP++M+ + L +L NN++ G
Sbjct: 687 NK-LDGRIPQAMSALTM-----------------------------LTEIDLSNNNLSGP 716
Query: 221 IP 222
IP
Sbjct: 717 IP 718
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 70/161 (43%), Gaps = 34/161 (21%)
Query: 14 ICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNL--SIAFDWLM 71
+ G IP LG+LS L+ L L WL+ + +L YV ++ D+
Sbjct: 427 LSGTIPSSLGSLSKLRDLKL------------WLNMLEGEIPQELMYVKTLETLILDF-- 472
Query: 72 VANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFL 131
N L + LSNC ++L + LS+N+ I W+ L +L L
Sbjct: 473 --NDLTGEIPSGLSNC-------------TNLNWISLSNNRLTGE-IPKWIGRLENLAIL 516
Query: 132 DLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSM 172
L N+F G I E LG+ S+ LDL+ N G IP +M
Sbjct: 517 KLSNNSFSGNIPAE-LGDCRSLIWLDLNTNL-FNGTIPAAM 555
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 102 SLTMLDLSHNQFDNSFILSWVFA--LSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLS 159
SL +LDLS N + ++ WV + L L + N G +D+ NL LD+S
Sbjct: 149 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNL---EFLDVS 205
Query: 160 LNTGLTGRIPRSMALCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVG 219
N TG IP L + + LD+ + + G + + L N+ +N VG
Sbjct: 206 SNNFSTG-IPF------LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 258
Query: 220 FIP 222
IP
Sbjct: 259 PIP 261
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 101/230 (43%), Gaps = 25/230 (10%)
Query: 4 LRYLNFSKTRICGIIPQ--QLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYV 61
L L+ S+ + G + LG+ S L+FL++SS L + ++ LE LDL
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 158
Query: 62 NLSIA--FDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFS---SLTMLDLSHNQFDNS 116
++S A W++ ++ L L +S ++ V+ S +L LD+S N F S
Sbjct: 159 SISGANVVGWVL-SDGCGELKHLAISGNKIS-----GDVDVSRCVNLEFLDVSSNNF--S 210
Query: 117 FILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMALCN 176
+ ++ S L LD+ N G A+ T + L++S N G IP + L +
Sbjct: 211 TGIPFLGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQ-FVGPIP-PLPLKS 267
Query: 177 LKSINLQESLDMRSSSIYGHLTDQL-GQFRNLVTFNLVNNSIVGFIPWSF 225
L+ ++L E + G + D L G L +L N G +P F
Sbjct: 268 LQYLSLAE------NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 311
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 1 MGNLRYL---NFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFL--WLSGISLLEH 55
+G++ YL N I G IP ++G+L L LDLSS L D + +S +++L
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL---DGRIPQAMSALTMLTE 705
Query: 56 LDLRYVNLS 64
+DL NLS
Sbjct: 706 IDLSNNNLS 714
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 109/241 (45%), Gaps = 28/241 (11%)
Query: 1 MGNLRYLNF----SKTRICGIIPQQLGNLSNLQFLDLS-SKYLLYVDNFLWLSGISLLEH 55
+ NL YLNF + G IP + L+ L +L ++ + + +FL S I L
Sbjct: 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL--SQIKTLVT 129
Query: 56 LDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSL-TMLDLSHNQFD 114
LD Y LS + + L +LV + ++ P + +FS L T + +S N+
Sbjct: 130 LDFSYNALSGTLPPSISS--LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 115 NSFILSWVFALSHLPFLDLGFNNFQGTIDLEAL-GNLTSINRLDLSLNTGLTGRIPRSMA 173
+ FA +L F+DL N +G D L G+ + ++ L+ N S+A
Sbjct: 188 GK--IPPTFANLNLAFVDLSRNMLEG--DASVLFGSDKNTQKIHLAKN---------SLA 234
Query: 174 LCNLKSINLQE---SLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIY 230
+L + L + LD+R++ IYG L L Q + L + N+ N++ G IP L +
Sbjct: 235 F-DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF 293
Query: 231 D 231
D
Sbjct: 294 D 294
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 109/264 (41%), Gaps = 50/264 (18%)
Query: 43 NFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSS 102
NFL++ GI+ L + + +IA KL L L +++ + P +
Sbjct: 79 NFLYIGGINNL----VGPIPPAIA--------KLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 103 LTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSI-NRLDLSLN 161
L LD S+N + S + +L +L + N G I ++ G+ + + + +S N
Sbjct: 127 LVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIP-DSYGSFSKLFTSMTISRN 184
Query: 162 TGLTGRIPRSMALCNLKSINLQES-LDMRSSSIYG--------HLTD--------QLGQF 204
LTG+IP + A NL ++L + L+ +S ++G HL ++G
Sbjct: 185 R-LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS 243
Query: 205 RNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVK 264
+NL +L NN I G +P + + LNV+ F NL GGN
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS-----FNNLC--GEIPQGGN------- 289
Query: 265 HDWIPHFQLVALGLHSCYIGSRFP 288
+ F + A + C GS P
Sbjct: 290 ---LQRFDVSAYANNKCLCGSPLP 310
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 17/158 (10%)
Query: 4 LRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNL 63
L+ LNFS ++ + P L NL+ L+ LD+SS V + L+ ++ LE L +
Sbjct: 153 LQQLNFSSNQVTDLKP--LANLTTLERLDISSNK---VSDISVLAKLTNLESLIATNNQI 207
Query: 64 SIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVF 123
S ++ N L EL L+ QL+ LA+ ++LT LDL++NQ N L+ +
Sbjct: 208 SDITPLGILTN----LDELSLNGNQLKDIGTLAS--LTNLTDLDLANNQISN---LAPLS 258
Query: 124 ALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLN 161
L+ L L LG N ++ L LT++ L+L+ N
Sbjct: 259 GLTKLTELKLGANQIS---NISPLAGLTALTNLELNEN 293
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 97/223 (43%), Gaps = 54/223 (24%)
Query: 79 LVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNF 138
L ++ SN QL +PL N + L + +++NQ + ++ + L++L L L FNN
Sbjct: 65 LTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIAD---ITPLANLTNLTGLTL-FNN- 117
Query: 139 QGTIDLEALGNLTSINRLDLSLNT--------GLTG---------RIPRSMALCNLKSIN 181
D++ L NLT++NRL+LS NT GLT ++ L NL ++
Sbjct: 118 -QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTL- 175
Query: 182 LQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF-----ELHIYDNKLN- 235
E LD+ S+ + L + NL + NN I P EL + N+L
Sbjct: 176 --ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 231
Query: 236 -------VTLFELHFAN-----------LIEMSWFRVGGNQLT 260
L +L AN L +++ ++G NQ++
Sbjct: 232 IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS 274
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 80/158 (50%), Gaps = 17/158 (10%)
Query: 4 LRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNL 63
L+ L+FS ++ + P L NL+ L+ LD+SS V + L+ ++ LE L +
Sbjct: 153 LQQLSFSSNQVTDLKP--LANLTTLERLDISSNK---VSDISVLAKLTNLESLIATNNQI 207
Query: 64 SIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVF 123
S ++ N L EL L+ QL+ LA+ ++LT LDL++NQ N L+ +
Sbjct: 208 SDITPLGILTN----LDELSLNGNQLKDIGTLAS--LTNLTDLDLANNQISN---LAPLS 258
Query: 124 ALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLN 161
L+ L L LG N ++ L LT++ L+L+ N
Sbjct: 259 GLTKLTELKLGANQIS---NISPLAGLTALTNLELNEN 293
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 97/223 (43%), Gaps = 54/223 (24%)
Query: 79 LVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNF 138
L ++ SN QL +PL N + L + +++NQ + ++ + L++L L L FNN
Sbjct: 65 LTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIAD---ITPLANLTNLTGLTL-FNN- 117
Query: 139 QGTIDLEALGNLTSINRLDLSLNT--------GLTG---------RIPRSMALCNLKSIN 181
D++ L NLT++NRL+LS NT GLT ++ L NL ++
Sbjct: 118 -QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTL- 175
Query: 182 LQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF-----ELHIYDNKLN- 235
E LD+ S+ + L + NL + NN I P EL + N+L
Sbjct: 176 --ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 231
Query: 236 -------VTLFELHFAN-----------LIEMSWFRVGGNQLT 260
L +L AN L +++ ++G NQ++
Sbjct: 232 IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS 274
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 80/158 (50%), Gaps = 17/158 (10%)
Query: 4 LRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNL 63
L+ L+FS ++ + P L NL+ L+ LD+SS V + L+ ++ LE L +
Sbjct: 153 LQQLSFSSNQVTDLKP--LANLTTLERLDISSNK---VSDISVLAKLTNLESLIATNNQI 207
Query: 64 SIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVF 123
S ++ N L EL L+ QL+ LA+ ++LT LDL++NQ N L+ +
Sbjct: 208 SDITPLGILTN----LDELSLNGNQLKDIGTLAS--LTNLTDLDLANNQISN---LAPLS 258
Query: 124 ALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLN 161
L+ L L LG N ++ L LT++ L+L+ N
Sbjct: 259 GLTKLTELKLGANQIS---NISPLAGLTALTNLELNEN 293
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 97/223 (43%), Gaps = 54/223 (24%)
Query: 79 LVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNF 138
L ++ SN QL +PL N + L + +++NQ + ++ + L++L L L FNN
Sbjct: 65 LTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIAD---ITPLANLTNLTGLTL-FNN- 117
Query: 139 QGTIDLEALGNLTSINRLDLSLNT--------GLTG---------RIPRSMALCNLKSIN 181
D++ L NLT++NRL+LS NT GLT ++ L NL ++
Sbjct: 118 -QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTL- 175
Query: 182 LQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF-----ELHIYDNKLN- 235
E LD+ S+ + L + NL + NN I P EL + N+L
Sbjct: 176 --ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 231
Query: 236 -------VTLFELHFAN-----------LIEMSWFRVGGNQLT 260
L +L AN L +++ ++G NQ++
Sbjct: 232 IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS 274
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 17 IIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKL 76
I+ L LQ LD L V F + L +LD+ Y N I FD + + L
Sbjct: 385 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG--L 442
Query: 77 LSLVELRLSNCQLQHFSPLATV--NFSSLTMLDLSHNQFDNSFILSW-VF-ALSHLPFLD 132
SL L+++ + + L+ V N ++LT LDLS Q + +SW VF L L L+
Sbjct: 443 TSLNTLKMAGNSFKD-NTLSNVFANTTNLTFLDLSKCQLEQ---ISWGVFDTLHRLQLLN 498
Query: 133 LGFNNFQGTIDLEALGNLTSINRLDLSLN-----TGLTGRIPRSMALCNL 177
+ NN +D L S++ LD S N G+ P+S+A NL
Sbjct: 499 MSHNNLL-FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNL 547
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 80/205 (39%), Gaps = 27/205 (13%)
Query: 65 IAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFA 124
++ +L K L + CQL+ F T++ L L L+ N+ SF A
Sbjct: 290 VSIKYLEDVPKHFKWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKGSISF---KKVA 343
Query: 125 LSHLPFLDLGFN--NFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMALCNLKSINL 182
L L +LDL N +F G LG S+ LDLS N G M L L+ ++
Sbjct: 344 LPSLSYLDLSRNALSFSGCCSYSDLGT-NSLRHLDLSFN-GAIIMSANFMGLEELQHLDF 401
Query: 183 QESLDMRSSSIYGHLT----------------DQLGQFRNLVTFNLVNNSIVGFIPWSFE 226
Q S R + L+ D G F L + N + + F +
Sbjct: 402 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS 461
Query: 227 LHIYDNKLNVTLFELHFANLIEMSW 251
+++ N N+T +L L ++SW
Sbjct: 462 -NVFANTTNLTFLDLSKCQLEQISW 485
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 16/162 (9%)
Query: 25 LSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRL 84
L LQ LD L V F + L +LD+ Y N I FD + + L SL L++
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG--LTSLNTLKM 455
Query: 85 SNCQLQHFSPLATV--NFSSLTMLDLSHNQFDNSFILSW-VF-ALSHLPFLDLGFNNFQG 140
+ + + L+ V N ++LT LDLS Q + +SW VF L L L++ NN
Sbjct: 456 AGNSFKD-NTLSNVFANTTNLTFLDLSKCQLEQ---ISWGVFDTLHRLQLLNMSHNNLL- 510
Query: 141 TIDLEALGNLTSINRLDLSLN-----TGLTGRIPRSMALCNL 177
+D L S++ LD S N G+ P+S+A NL
Sbjct: 511 FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNL 552
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 80/205 (39%), Gaps = 27/205 (13%)
Query: 65 IAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFA 124
++ +L K L + CQL+ F T++ L L L+ N+ SF A
Sbjct: 295 VSIKYLEDVPKHFKWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKGSISF---KKVA 348
Query: 125 LSHLPFLDLGFN--NFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMALCNLKSINL 182
L L +LDL N +F G LG S+ LDLS N G M L L+ ++
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGT-NSLRHLDLSFN-GAIIMSANFMGLEELQHLDF 406
Query: 183 QESLDMRSSSIYGHLT----------------DQLGQFRNLVTFNLVNNSIVGFIPWSFE 226
Q S R + L+ D G F L + N + + F +
Sbjct: 407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS 466
Query: 227 LHIYDNKLNVTLFELHFANLIEMSW 251
+++ N N+T +L L ++SW
Sbjct: 467 -NVFANTTNLTFLDLSKCQLEQISW 490
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 82/204 (40%), Gaps = 56/204 (27%)
Query: 3 NLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVN 62
+L+YL+ S + + LG L L+ LD L + F + L +LD+ + +
Sbjct: 398 SLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 456
Query: 63 LSIAFDWL-----------MVAN------------KLLSLVELRLSNCQLQHFSPLATVN 99
+AF+ + M N +L +L L LS CQL+ SP A +
Sbjct: 457 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 516
Query: 100 FSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLS 159
SSL +L++SHN F F+L P+ L S+ LD S
Sbjct: 517 LSSLQVLNMSHNNF---------FSLDTFPY-----------------KCLNSLQVLDYS 550
Query: 160 LNTGLTGR------IPRSMALCNL 177
LN +T + P S+A NL
Sbjct: 551 LNHIMTSKKQELQHFPSSLAFLNL 574
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 82/204 (40%), Gaps = 56/204 (27%)
Query: 3 NLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVN 62
+L+YL+ S + + LG L L+ LD L + F + L +LD+ + +
Sbjct: 374 SLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 63 LSIAFDWL-----------MVAN------------KLLSLVELRLSNCQLQHFSPLATVN 99
+AF+ + M N +L +L L LS CQL+ SP A +
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 100 FSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLS 159
SSL +L++SHN F F+L P+ L S+ LD S
Sbjct: 493 LSSLQVLNMSHNNF---------FSLDTFPY-----------------KCLNSLQVLDYS 526
Query: 160 LNTGLTGR------IPRSMALCNL 177
LN +T + P S+A NL
Sbjct: 527 LNHIMTSKKQELQHFPSSLAFLNL 550
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 94/222 (42%), Gaps = 53/222 (23%)
Query: 79 LVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNF 138
L ++ SN QL +PL N + L + +++NQ + L+ + L+ L FNN
Sbjct: 70 LTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITPLANLTNLTGLTL----FNN- 122
Query: 139 QGTIDLEALGNLTSINRLDLSLNT--------GLTG--------RIPRSMALCNLKSINL 182
D++ L NLT++NRL+LS NT GLT ++ L NL ++
Sbjct: 123 -QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTL-- 179
Query: 183 QESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF-----ELHIYDNKLN-- 235
E LD+ S+ + L + NL + NN I P EL + N+L
Sbjct: 180 -ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI 236
Query: 236 ------VTLFELHFAN-----------LIEMSWFRVGGNQLT 260
L +L AN L +++ ++G NQ++
Sbjct: 237 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS 278
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 15/142 (10%)
Query: 20 QQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSL 79
+ L NL+ L+ LD+SS V + L+ ++ LE L +S ++ N L
Sbjct: 171 KPLANLTTLERLDISSNK---VSDISVLAKLTNLESLIATNNQISDITPLGILTN----L 223
Query: 80 VELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQ 139
EL L+ QL+ LA+ ++LT LDL++NQ N L+ + L+ L L LG N
Sbjct: 224 DELSLNGNQLKDIGTLAS--LTNLTDLDLANNQISN---LAPLSGLTKLTELKLGANQIS 278
Query: 140 GTIDLEALGNLTSINRLDLSLN 161
++ L LT++ L+L+ N
Sbjct: 279 ---NISPLAGLTALTNLELNEN 297
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 94/222 (42%), Gaps = 53/222 (23%)
Query: 79 LVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNF 138
L ++ SN QL +PL N + L + +++NQ + L+ + L+ L FNN
Sbjct: 65 LTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITPLANLTNLTGLTL----FNN- 117
Query: 139 QGTIDLEALGNLTSINRLDLSLNT--------GLTG--------RIPRSMALCNLKSINL 182
D++ L NLT++NRL+LS NT GLT ++ L NL ++
Sbjct: 118 -QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTL-- 174
Query: 183 QESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF-----ELHIYDNKLN-- 235
E LD+ S+ + L + NL + NN I P EL + N+L
Sbjct: 175 -ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI 231
Query: 236 ------VTLFELHFAN-----------LIEMSWFRVGGNQLT 260
L +L AN L +++ ++G NQ++
Sbjct: 232 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS 273
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 18/158 (11%)
Query: 4 LRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNL 63
L+ LNF ++ + P L NL+ L+ LD+SS V + L+ ++ LE L +
Sbjct: 153 LQQLNFGN-QVTDLKP--LANLTTLERLDISSNK---VSDISVLAKLTNLESLIATNNQI 206
Query: 64 SIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVF 123
S ++ N L EL L+ QL+ LA+ ++LT LDL++NQ N L+ +
Sbjct: 207 SDITPLGILTN----LDELSLNGNQLKDIGTLAS--LTNLTDLDLANNQISN---LAPLS 257
Query: 124 ALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLN 161
L+ L L LG N ++ L LT++ L+L+ N
Sbjct: 258 GLTKLTELKLGANQIS---NISPLAGLTALTNLELNEN 292
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 82/204 (40%), Gaps = 56/204 (27%)
Query: 3 NLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVN 62
+L+YL+ S + + LG L L+ LD L + F + L +LD+ + +
Sbjct: 79 SLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137
Query: 63 LSIAFDWL-----------MVAN------------KLLSLVELRLSNCQLQHFSPLATVN 99
+AF+ + M N +L +L L LS CQL+ SP A +
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197
Query: 100 FSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLS 159
SSL +L++SHN F F+L P+ L S+ LD S
Sbjct: 198 LSSLQVLNMSHNNF---------FSLDTFPY-----------------KCLNSLQVLDYS 231
Query: 160 LNTGLTGR------IPRSMALCNL 177
LN +T + P S+A NL
Sbjct: 232 LNHIMTSKKQELQHFPSSLAFLNL 255
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 94/222 (42%), Gaps = 53/222 (23%)
Query: 79 LVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNF 138
L ++ SN QL +PL N + L + +++NQ + L+ + L+ L FNN
Sbjct: 65 LTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITPLANLTNLTGLTL----FNN- 117
Query: 139 QGTIDLEALGNLTSINRLDLSLNT--------GLTG--------RIPRSMALCNLKSINL 182
D++ L NLT++NRL+LS NT GLT ++ L NL ++
Sbjct: 118 -QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTL-- 174
Query: 183 QESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF-----ELHIYDNKLN-- 235
E LD+ S+ + L + NL + NN I P EL + N+L
Sbjct: 175 -ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI 231
Query: 236 ------VTLFELHFAN-----------LIEMSWFRVGGNQLT 260
L +L AN L +++ ++G NQ++
Sbjct: 232 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS 273
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 18/158 (11%)
Query: 4 LRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNL 63
L+ LNF ++ + P L NL+ L+ LD+SS V + L+ ++ LE L +
Sbjct: 153 LQQLNFGN-QVTDLKP--LANLTTLERLDISSNK---VSDISVLAKLTNLESLIATNNQI 206
Query: 64 SIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVF 123
S ++ N L EL L+ QL+ LA+ ++LT LDL++NQ N L+ +
Sbjct: 207 SDITPLGILTN----LDELSLNGNQLKDIGTLAS--LTNLTDLDLANNQISN---LAPLS 257
Query: 124 ALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLN 161
L+ L L LG N ++ L LT++ L+L+ N
Sbjct: 258 GLTKLTELKLGANQIS---NISPLAGLTALTNLELNEN 292
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 94/222 (42%), Gaps = 53/222 (23%)
Query: 79 LVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNF 138
L ++ SN QL +PL N + L + +++NQ + L+ + L+ L FNN
Sbjct: 69 LTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITPLANLTNLTGLTL----FNN- 121
Query: 139 QGTIDLEALGNLTSINRLDLSLNT--------GLTG--------RIPRSMALCNLKSINL 182
D++ L NLT++NRL+LS NT GLT ++ L NL ++
Sbjct: 122 -QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTL-- 178
Query: 183 QESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF-----ELHIYDNKLN-- 235
E LD+ S+ + L + NL + NN I P EL + N+L
Sbjct: 179 -ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI 235
Query: 236 ------VTLFELHFAN-----------LIEMSWFRVGGNQLT 260
L +L AN L +++ ++G NQ++
Sbjct: 236 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS 277
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 15/142 (10%)
Query: 20 QQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSL 79
+ L NL+ L+ LD+SS V + L+ ++ LE L +S ++ N L
Sbjct: 170 KPLANLTTLERLDISSNK---VSDISVLAKLTNLESLIATNNQISDITPLGILTN----L 222
Query: 80 VELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQ 139
EL L+ QL+ LA+ ++LT LDL++NQ N L+ + L+ L L LG N
Sbjct: 223 DELSLNGNQLKDIGTLAS--LTNLTDLDLANNQISN---LAPLSGLTKLTELKLGANQIS 277
Query: 140 GTIDLEALGNLTSINRLDLSLN 161
++ L LT++ L+L+ N
Sbjct: 278 ---NISPLAGLTALTNLELNEN 296
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 117/286 (40%), Gaps = 56/286 (19%)
Query: 1 MGNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLL------------------YVD 42
+ NL L +I I P L NL+NL L+LSS + V
Sbjct: 110 LTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT 167
Query: 43 NFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSS 102
+ L+ ++ LE LD+ +S D ++A KL +L L +N Q+ +PL ++
Sbjct: 168 DLKPLANLTTLERLDISSNKVS---DISVLA-KLTNLESLIATNNQISDITPLGI--LTN 221
Query: 103 LTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNT 162
L L L+ NQ + + + +L++L LDL N +L L LT + L L N
Sbjct: 222 LDELSLNGNQLKD---IGTLASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQ 275
Query: 163 GLTGRIPRSMALCNLKSINLQESLDMRSSSIYGHLTD--QLGQFRNLVTFNLVNNSIVGF 220
I L L ++ L E+ L D + +NL L N+I
Sbjct: 276 --ISNISPLAGLTALTNLELNEN----------QLEDISPISNLKNLTYLTLYFNNISDI 323
Query: 221 IPWSF-----ELHIYDNKL-NVTLFELHFANLIEMSWFRVGGNQLT 260
P S L +NK+ +V+ ANL ++W G NQ++
Sbjct: 324 SPVSSLTKLQRLFFANNKVSDVS----SLANLTNINWLSAGHNQIS 365
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 1 MGNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYL--LYVDNFLWLSGISLLEHLDL 58
+ +L+ LN + +I I + L NLQ L+LS L LY NF G+ + ++DL
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY---GLPKVAYIDL 345
Query: 59 RYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSP--------------LATVNFSSLT 104
+ +++I D + L ++LR + HF P L +N ++
Sbjct: 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTA-N 404
Query: 105 MLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNF 138
++ LS N+ +N IL ++ + HL L L N F
Sbjct: 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRF 438
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 34.3 bits (77), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 24/133 (18%)
Query: 3 NLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVN 62
+L+YL+ S + + LG L L+ LD L + F + L +LD+ + +
Sbjct: 374 SLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 63 LSIAFDWL-----------MVAN------------KLLSLVELRLSNCQLQHFSPLATVN 99
+AF+ + M N +L +L L LS CQL+ SP A +
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 100 FSSLTMLDLSHNQ 112
SSL +L+++ NQ
Sbjct: 493 LSSLQVLNMASNQ 505
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 8/164 (4%)
Query: 1 MGNLRYLNFSKTRIC--GIIPQQLGNLSNLQFLDLS-SKYLLYVDNFLWLSGISLLEHLD 57
+ +L +L+ S+ + G Q ++L++LDLS + + NFL G+ LEHLD
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL---GLEQLEHLD 402
Query: 58 LRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSF 117
++ NL ++ + + L +L+ L +S+ + SSL +L ++ N F +F
Sbjct: 403 FQHSNLKQMSEFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461
Query: 118 ILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLN 161
+ L +L FLDL + + A +L+S+ L+++ N
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASN 504
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 34.3 bits (77), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 35/138 (25%)
Query: 4 LRYLNFSKTRICGIIPQQLGNLSNLQ--FLDLSSKYLLYVDNFLWLSGISLLEHLDLRYV 61
++ L+ + T+I + P L LSNLQ +LDL+ + N L+G++ L++L +
Sbjct: 109 IKTLDLTSTQITDVTP--LAGLSNLQVLYLDLN-----QITNISPLAGLTNLQYLSIGNA 161
Query: 62 NLSIAFDWLMVAN---------------------KLLSLVELRLSNCQLQHFSPLATVNF 100
+S D +AN L +L+E+ L N Q+ SPLA N
Sbjct: 162 QVS---DLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLA--NT 216
Query: 101 SSLTMLDLSHNQFDNSFI 118
S+L ++ L++ N +
Sbjct: 217 SNLFIVTLTNQTITNQPV 234
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 76 LLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGF 135
L S+ L L++ Q+ +PLA S+L +L L NQ N +S + L++L +L +G
Sbjct: 106 LQSIKTLDLTSTQITDVTPLA--GLSNLQVLYLDLNQITN---ISPLAGLTNLQYLSIG- 159
Query: 136 NNFQGTIDLEALGNLTSINRL 156
N Q + DL L NL+ + L
Sbjct: 160 -NAQVS-DLTPLANLSKLTTL 178
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 1 MGNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRY 60
+ NL L+ S+ +I ++ +L NL+ L++ L+Y+ + + SG++ LE L L
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF-SGLNSLEQLTLEK 161
Query: 61 VNL-SIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFIL 119
NL SI + L + L L+ LRL + + + L +L++SH + ++
Sbjct: 162 CNLTSIPTEAL---SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP 218
Query: 120 SWVFALS 126
+ ++ L+
Sbjct: 219 NCLYGLN 225
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 15/140 (10%)
Query: 4 LRYLNFSKTRICGIIPQQ-LGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVN 62
L L+ + TR+ PQ NL LQ L+L+ +L + L L+G+ +L HL+L+ +
Sbjct: 399 LELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHL-LAGLPVLRHLNLKGNH 457
Query: 63 LSIAFDWLMVANKLL----SLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFI 118
D + LL SL L LS+C L A + ++ +DLSH NS
Sbjct: 458 FQ---DGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSH----NSLT 510
Query: 119 LSWVFALSHLP--FLDLGFN 136
+ +LSHL +L+L N
Sbjct: 511 CDSIDSLSHLKGIYLNLAAN 530
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 74/172 (43%), Gaps = 12/172 (6%)
Query: 4 LRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNL 63
+ LN + R I + LQ LDL++ +L + + + G++LL+ L L VN
Sbjct: 253 VESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPS--GMKGLNLLKKLVLS-VN- 308
Query: 64 SIAFDWL--MVANKLLSLVELRL-SNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILS 120
FD L + A SL L + N + H +L LDLSHN + S S
Sbjct: 309 --HFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCS 366
Query: 121 WVFA-LSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRS 171
LSHL L+L N G + +A + LDL+ T L P+S
Sbjct: 367 LQLKNLSHLQTLNLSHNEPLG-LQSQAFKECPQLELLDLAF-TRLHINAPQS 416
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 76 LLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGF 135
L S+ L L++ Q+ +PLA S+L +L L NQ N +S + L++L +L +G
Sbjct: 112 LQSIKTLDLTSTQITDVTPLA--GLSNLQVLYLDLNQITN---ISPLAGLTNLQYLSIGN 166
Query: 136 NNFQGTIDLEALGNLTSINRL 156
N DL L NL+ + L
Sbjct: 167 NQVN---DLTPLANLSKLTTL 184
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 29/126 (23%)
Query: 4 LRYLNFSKTRICGIIPQQLGNLSNLQ--FLDLSSKYLLYVDNFLWLSGISLLEHLDL--- 58
++ L+ + T+I + P L LSNLQ +LDL+ + N L+G++ L++L +
Sbjct: 115 IKTLDLTSTQITDVTP--LAGLSNLQVLYLDLN-----QITNISPLAGLTNLQYLSIGNN 167
Query: 59 ------RYVNLSIAFDWLMVANK---------LLSLVELRLSNCQLQHFSPLATVNFSSL 103
NLS NK L +L+E+ L + Q+ SPLA N S+L
Sbjct: 168 QVNDLTPLANLSKLTTLRADDNKISDISPLASLPNLIEVHLKDNQISDVSPLA--NLSNL 225
Query: 104 TMLDLS 109
++ L+
Sbjct: 226 FIVTLT 231
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 14/173 (8%)
Query: 1 MGNLRYLNFSKTRI-----CGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEH 55
+ NL+ L+ S + I C + QL NL +LQ+L+LS L +++ + LE
Sbjct: 348 LENLQKLDLSHSDIEASDCCNL---QLKNLRHLQYLNLSYNEPLGLEDQAF-KECPQLEL 403
Query: 56 LDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDN 115
LD+ + +L + N L V L LS+C L + L L+L N F +
Sbjct: 404 LDVAFTHLHVKAPHSPFQNLHLLRV-LNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQD 462
Query: 116 SFI--LSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTG 166
I + + + L L L N +ID +A L ++N LDLS N+ LTG
Sbjct: 463 GSISKTNLLQMVGSLEILILSSCNLL-SIDQQAFHGLRNVNHLDLSHNS-LTG 513
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 65/166 (39%), Gaps = 37/166 (22%)
Query: 4 LRYLNFSKTRICGIIPQQLGNLSNLQFLDLS------------------------SKYLL 39
L+YLN S G+ Q L+ LD++ S LL
Sbjct: 377 LQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLL 436
Query: 40 YVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE----LRLSNCQLQHFSPL 95
N L+G+ L HL+L+ + D + LL +V L LS+C L
Sbjct: 437 DTSNQHLLAGLQDLRHLNLQGNSFQ---DGSISKTNLLQMVGSLEILILSSCNLLSIDQQ 493
Query: 96 ATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLP--FLDLGFNNFQ 139
A ++ LDLSH NS + ALSHL +L++ NN +
Sbjct: 494 AFHGLRNVNHLDLSH----NSLTGDSMDALSHLKGLYLNMASNNIR 535
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
Query: 103 LTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNT 162
L LD+SHN+ N ++ L LDL FN+F + GNLT + L
Sbjct: 102 LEYLDVSHNRLQNISCC----PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFL------ 151
Query: 163 GLTGRIPRSMALCNLKSINLQES-LDMRSSSIYGHLTDQLGQFRNLVTFNLV 213
GL+ R + L + ++L LD+ S I G T+ L Q N +LV
Sbjct: 152 GLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESL-QIPNTTVLHLV 202
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 100 FSSLTMLDLSHNQF----DNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINR 155
F+ L L L+ N+ DN+F + L+HL L+L NF G+ID NL +
Sbjct: 298 FTDLEQLTLAQNEINKIDDNAF-----WGLTHLLKLNLS-QNFLGSIDSRMFENLDKLEV 351
Query: 156 LDLSLN 161
LDLS N
Sbjct: 352 LDLSYN 357
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 1 MGNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRY 60
+ N+RYL ++ I L L+NL +L L+ L + N ++ ++ L+ L L
Sbjct: 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVF-DKLTNLKELVLVE 118
Query: 61 VNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQF 113
L D V +KL +L L L++ QLQ ++LT LDLS+NQ
Sbjct: 119 NQLQSLPDG--VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 84/206 (40%), Gaps = 35/206 (16%)
Query: 78 SLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNN 137
SLVELR+ + +++ ++ +++ N +NS F L +L +
Sbjct: 124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK 183
Query: 138 FQG-TIDLEALGNLTSINRLDLSLNTGLTGRIPRSMALCNLKSINLQESLDMRSSSIYGH 196
G DL ++N L L N +++I L++ L R S +Y
Sbjct: 184 LTGIPKDLPE-----TLNELHLDHNK--------------IQAIELEDLL--RYSKLY-- 220
Query: 197 LTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGG 256
+LG N + ++ N + F+P ELH+ +NKL+ L L+++ +
Sbjct: 221 ---RLGLGHNQI--RMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHT-- 273
Query: 257 NQLTLEVKHDWIPHFQLVALGLHSCY 282
N +T +D+ P V G+ Y
Sbjct: 274 NNITKVGVNDFCP----VGFGVKRAY 295
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 1 MGNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRY 60
+ NL L S + I + + NL++LDLSS +L +D FL+ S + LE L L Y
Sbjct: 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLF-SDLQALEVL-LLY 120
Query: 61 VNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATV----NFSSLTMLDLSHNQ 112
N + D + + L +L LS Q+ F P+ + L +LDLS N+
Sbjct: 121 NNHIVVVDRNAFED-MAQLQKLYLSQNQISRF-PVELIKDGNKLPKLMLLDLSSNK 174
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 72 VANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQF 113
V +KL SL ELRL N QL+ A + L L L +NQ
Sbjct: 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 4 LRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNL 63
LR +NFS +I I S + + L+S L V + ++ G+ L+ L LR +
Sbjct: 59 LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMF-KGLESLKTLMLRSNRI 117
Query: 64 SIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWV 122
+ + + L S+ L L + Q+ +P A SL+ L+L N F+ + L+W+
Sbjct: 118 TCVGNDSFIG--LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWL 174
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 86/205 (41%), Gaps = 33/205 (16%)
Query: 76 LLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGF 135
L +L L L+ Q+ SPL+ N LT L + N+ + +S + L++L L L
Sbjct: 65 LTNLEYLNLNGNQITDISPLS--NLVKLTNLYIGTNKITD---ISALQNLTNLRELYLNE 119
Query: 136 NNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMALCNLKSINLQESLDMRSSSIYG 195
+N D+ L NLT L+L N L+ P S L + + ES ++ +
Sbjct: 120 DNIS---DISPLANLTKXYSLNLGANHNLSDLSPLSNX-TGLNYLTVTES-KVKDVTPIA 174
Query: 196 HLTD---------------QLGQFRNLVTFNLVNNSIVGFIPWSF-----ELHIYDNKLN 235
+LTD L +L F N I P + L I +NK+
Sbjct: 175 NLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKI- 233
Query: 236 VTLFELHFANLIEMSWFRVGGNQLT 260
L L ANL +++W +G NQ++
Sbjct: 234 TDLSPL--ANLSQLTWLEIGTNQIS 256
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 75/185 (40%), Gaps = 33/185 (17%)
Query: 1 MGNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLY---------VDN--FLWLSG 49
+ +LRYL+ I + P+ LSNL++L L + +D+ F WL
Sbjct: 271 LPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWL-- 328
Query: 50 ISLLEHLDLRYVNLS----------IAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVN 99
LE+L++ N+ ++ +L ++ SL L SPL T+N
Sbjct: 329 -KYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLN 387
Query: 100 FSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLS 159
+ + +++ F SW L L LDLG N + + + L +I + LS
Sbjct: 388 LTKNHISKIANGTF------SW---LGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLS 438
Query: 160 LNTGL 164
N L
Sbjct: 439 YNKYL 443
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,994,151
Number of Sequences: 62578
Number of extensions: 303723
Number of successful extensions: 1079
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 854
Number of HSP's gapped (non-prelim): 150
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)