Query 040144
Match_columns 289
No_of_seqs 174 out of 2715
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 05:33:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040144.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040144hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 8.4E-32 1.8E-36 253.7 19.5 280 2-288 140-445 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.6E-31 3.4E-36 251.9 19.0 283 1-289 259-589 (968)
3 KOG4194 Membrane glycoprotein 99.9 7E-28 1.5E-32 201.1 3.6 271 2-284 149-429 (873)
4 KOG4194 Membrane glycoprotein 99.9 2.3E-27 5E-32 198.1 5.4 273 2-288 102-408 (873)
5 KOG0444 Cytoskeletal regulator 99.9 8.6E-26 1.9E-30 190.6 -2.8 263 1-282 102-373 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 2.2E-25 4.9E-30 188.1 -3.5 266 2-284 55-329 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 6.7E-24 1.4E-28 170.2 -5.9 95 186-284 440-541 (565)
8 PLN03210 Resistant to P. syrin 99.8 1.7E-18 3.6E-23 164.9 18.6 120 152-281 779-903 (1153)
9 PLN03210 Resistant to P. syrin 99.8 4.1E-18 8.9E-23 162.3 18.8 271 1-288 557-886 (1153)
10 PRK15387 E3 ubiquitin-protein 99.8 2.3E-18 5E-23 154.2 13.3 241 5-288 204-462 (788)
11 KOG0472 Leucine-rich repeat pr 99.8 9.8E-22 2.1E-26 157.9 -9.7 243 21-284 40-288 (565)
12 KOG4237 Extracellular matrix p 99.7 3.5E-20 7.6E-25 148.6 -5.3 269 4-283 69-358 (498)
13 cd00116 LRR_RI Leucine-rich re 99.7 1E-18 2.2E-23 145.3 -0.5 269 6-282 2-318 (319)
14 PRK15370 E3 ubiquitin-protein 99.7 9.1E-17 2E-21 144.6 10.6 242 3-284 179-428 (754)
15 KOG0618 Serine/threonine phosp 99.7 2.3E-18 5E-23 151.4 0.3 195 78-284 242-465 (1081)
16 PRK15387 E3 ubiquitin-protein 99.7 5.7E-16 1.2E-20 139.0 14.3 154 27-218 202-355 (788)
17 cd00116 LRR_RI Leucine-rich re 99.7 4.5E-18 9.7E-23 141.4 0.3 246 31-285 3-292 (319)
18 KOG0618 Serine/threonine phosp 99.7 1.3E-18 2.9E-23 152.9 -5.7 105 2-114 219-323 (1081)
19 KOG4237 Extracellular matrix p 99.6 1.8E-18 3.8E-23 138.9 -5.3 206 1-217 90-358 (498)
20 PRK15370 E3 ubiquitin-protein 99.6 5.1E-16 1.1E-20 139.9 9.2 222 2-261 199-429 (754)
21 KOG0617 Ras suppressor protein 99.6 1.9E-17 4.1E-22 118.8 -3.3 167 72-270 28-195 (264)
22 KOG0617 Ras suppressor protein 99.6 7.2E-17 1.6E-21 115.8 -4.2 151 22-182 29-180 (264)
23 KOG3207 Beta-tubulin folding c 99.4 7.2E-14 1.6E-18 114.1 3.1 215 23-262 118-341 (505)
24 KOG1909 Ran GTPase-activating 99.3 2.9E-13 6.2E-18 107.7 -0.8 238 2-260 30-311 (382)
25 KOG3207 Beta-tubulin folding c 99.2 2E-12 4.3E-17 105.8 -0.0 216 49-285 119-340 (505)
26 PF14580 LRR_9: Leucine-rich r 99.2 1.9E-11 4.1E-16 90.9 3.7 83 76-162 41-124 (175)
27 COG4886 Leucine-rich repeat (L 99.2 8.2E-11 1.8E-15 100.8 7.4 194 56-287 98-293 (394)
28 KOG0532 Leucine-rich repeat (L 99.1 1.8E-12 4E-17 109.4 -3.0 191 52-281 76-270 (722)
29 PF14580 LRR_9: Leucine-rich r 99.1 1.1E-10 2.4E-15 86.8 6.4 133 22-160 15-149 (175)
30 KOG1909 Ran GTPase-activating 99.1 1.2E-11 2.6E-16 98.6 0.8 189 22-218 88-311 (382)
31 KOG0532 Leucine-rich repeat (L 99.1 2.7E-12 5.8E-17 108.4 -4.5 174 76-285 74-248 (722)
32 KOG1259 Nischarin, modulator o 99.0 5E-11 1.1E-15 93.6 0.9 42 243-284 370-412 (490)
33 PF13855 LRR_8: Leucine rich r 99.0 8.4E-10 1.8E-14 67.7 5.2 61 205-283 1-61 (61)
34 COG4886 Leucine-rich repeat (L 99.0 8.6E-10 1.9E-14 94.5 7.0 182 22-223 112-295 (394)
35 PLN03150 hypothetical protein; 98.9 2.9E-09 6.2E-14 95.9 6.8 98 186-284 423-528 (623)
36 PF13855 LRR_8: Leucine rich r 98.8 5.6E-09 1.2E-13 64.0 4.3 61 2-63 1-61 (61)
37 KOG1259 Nischarin, modulator o 98.8 4.5E-10 9.8E-15 88.3 -1.2 134 21-165 279-412 (490)
38 PLN03150 hypothetical protein; 98.8 1.9E-08 4.1E-13 90.6 8.2 90 128-225 420-510 (623)
39 KOG2982 Uncharacterized conser 98.8 1.6E-09 3.4E-14 85.1 0.9 117 23-139 42-159 (418)
40 KOG0531 Protein phosphatase 1, 98.7 2.4E-09 5.2E-14 92.1 -0.3 107 22-138 91-198 (414)
41 KOG4658 Apoptotic ATPase [Sign 98.6 5.9E-08 1.3E-12 89.8 6.4 240 24-275 521-798 (889)
42 KOG4341 F-box protein containi 98.6 5.7E-10 1.2E-14 91.2 -6.6 258 4-281 140-436 (483)
43 COG5238 RNA1 Ran GTPase-activa 98.6 1.4E-08 3.1E-13 78.9 0.6 243 1-261 29-317 (388)
44 KOG2120 SCF ubiquitin ligase, 98.5 1.4E-09 3E-14 85.4 -5.5 153 27-182 186-345 (419)
45 KOG0531 Protein phosphatase 1, 98.5 5.5E-09 1.2E-13 89.9 -2.5 235 25-285 71-319 (414)
46 KOG4658 Apoptotic ATPase [Sign 98.5 8.6E-08 1.9E-12 88.7 4.7 104 3-110 546-651 (889)
47 KOG2120 SCF ubiquitin ligase, 98.4 1.8E-08 3.9E-13 79.3 -3.6 179 3-182 186-370 (419)
48 KOG1859 Leucine-rich repeat pr 98.2 4.1E-08 8.9E-13 86.1 -6.1 106 49-162 185-290 (1096)
49 KOG2982 Uncharacterized conser 98.1 5.1E-07 1.1E-11 71.3 0.3 84 25-111 70-156 (418)
50 KOG1644 U2-associated snRNP A' 98.1 3.9E-06 8.4E-11 62.7 4.9 129 28-162 21-151 (233)
51 PF12799 LRR_4: Leucine Rich r 98.1 1.6E-06 3.6E-11 48.7 2.2 38 247-285 1-38 (44)
52 KOG3665 ZYG-1-like serine/thre 98.1 3.1E-06 6.8E-11 76.6 4.1 83 76-161 147-230 (699)
53 KOG1859 Leucine-rich repeat pr 98.1 3.3E-08 7.2E-13 86.6 -8.3 125 6-139 168-292 (1096)
54 KOG4579 Leucine-rich repeat (L 98.0 6.6E-07 1.4E-11 62.6 -0.9 106 53-162 29-134 (177)
55 COG5238 RNA1 Ran GTPase-activa 98.0 3.8E-06 8.2E-11 65.7 3.0 16 203-218 301-316 (388)
56 PF12799 LRR_4: Leucine Rich r 98.0 5.8E-06 1.3E-10 46.5 2.7 40 2-42 1-40 (44)
57 KOG3665 ZYG-1-like serine/thre 98.0 1.5E-06 3.3E-11 78.6 0.1 134 26-162 122-261 (699)
58 KOG4341 F-box protein containi 97.9 7.4E-07 1.6E-11 73.4 -2.8 142 99-258 292-437 (483)
59 KOG4579 Leucine-rich repeat (L 97.8 1.1E-06 2.5E-11 61.4 -3.4 106 127-261 28-137 (177)
60 KOG1644 U2-associated snRNP A' 97.8 6.7E-05 1.5E-09 56.2 5.5 108 26-138 42-152 (233)
61 KOG2123 Uncharacterized conser 97.6 2.5E-06 5.5E-11 66.9 -4.0 100 3-108 20-124 (388)
62 KOG2739 Leucine-rich acidic nu 97.5 8.5E-05 1.8E-09 57.9 2.6 114 18-134 35-151 (260)
63 PRK15386 type III secretion pr 97.4 0.0012 2.6E-08 55.8 9.0 12 25-36 51-62 (426)
64 PRK15386 type III secretion pr 97.2 0.0014 3.1E-08 55.4 7.7 135 122-281 48-187 (426)
65 PF13306 LRR_5: Leucine rich r 97.2 0.0013 2.8E-08 46.7 6.5 84 20-109 6-89 (129)
66 KOG1947 Leucine rich repeat pr 97.1 8.9E-05 1.9E-09 65.3 -0.9 78 201-282 358-438 (482)
67 KOG2123 Uncharacterized conser 97.0 2.9E-05 6.2E-10 61.1 -3.9 80 52-137 20-99 (388)
68 PF13306 LRR_5: Leucine rich r 97.0 0.0036 7.7E-08 44.4 7.2 101 2-110 12-112 (129)
69 KOG2739 Leucine-rich acidic nu 96.9 0.00054 1.2E-08 53.5 2.0 104 4-110 45-152 (260)
70 PF00560 LRR_1: Leucine Rich R 96.1 0.005 1.1E-07 28.7 1.9 21 248-269 1-21 (22)
71 PF00560 LRR_1: Leucine Rich R 96.1 0.0039 8.4E-08 29.1 1.4 22 3-25 1-22 (22)
72 PF13504 LRR_7: Leucine rich r 95.3 0.0092 2E-07 25.8 1.0 13 272-284 2-14 (17)
73 KOG1947 Leucine rich repeat pr 94.8 0.014 3.1E-07 51.4 1.7 114 25-138 187-307 (482)
74 KOG4308 LRR-containing protein 93.0 0.00059 1.3E-08 59.5 -10.2 21 242-262 285-305 (478)
75 PF13516 LRR_6: Leucine Rich r 92.8 0.012 2.6E-07 28.0 -1.5 18 246-263 1-18 (24)
76 KOG4308 LRR-containing protein 92.7 0.00045 9.7E-09 60.3 -11.3 185 79-285 89-304 (478)
77 KOG3864 Uncharacterized conser 92.0 0.029 6.2E-07 42.5 -1.0 80 102-182 102-183 (221)
78 KOG3864 Uncharacterized conser 91.2 0.03 6.5E-07 42.4 -1.6 83 27-111 102-186 (221)
79 smart00370 LRR Leucine-rich re 88.8 0.32 7E-06 23.4 1.5 16 1-16 1-16 (26)
80 smart00369 LRR_TYP Leucine-ric 88.8 0.32 7E-06 23.4 1.5 16 1-16 1-16 (26)
81 smart00364 LRR_BAC Leucine-ric 86.5 0.48 1E-05 23.0 1.2 16 272-288 3-18 (26)
82 smart00368 LRR_RI Leucine rich 80.2 1.2 2.5E-05 22.0 1.2 14 271-284 2-15 (28)
83 smart00365 LRR_SD22 Leucine-ri 78.9 1.5 3.2E-05 21.3 1.3 15 247-261 2-16 (26)
84 smart00367 LRR_CC Leucine-rich 78.5 1.3 2.8E-05 21.3 1.1 16 270-285 1-17 (26)
85 KOG0473 Leucine-rich repeat pr 77.5 0.074 1.6E-06 41.4 -5.3 88 21-114 37-124 (326)
86 KOG3763 mRNA export factor TAP 66.2 5.9 0.00013 35.2 2.9 38 50-87 217-254 (585)
87 KOG0473 Leucine-rich repeat pr 63.1 0.16 3.4E-06 39.6 -6.3 83 3-91 43-125 (326)
88 KOG3763 mRNA export factor TAP 55.5 5.8 0.00013 35.2 1.1 67 23-91 215-284 (585)
89 TIGR00864 PCC polycystin catio 22.7 42 0.00091 36.4 1.1 32 228-260 1-32 (2740)
90 KOG4242 Predicted myosin-I-bin 20.9 1.8E+02 0.0039 26.0 4.3 19 75-93 163-181 (553)
91 TIGR00864 PCC polycystin catio 20.7 67 0.0014 35.1 2.1 31 188-218 2-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=8.4e-32 Score=253.71 Aligned_cols=280 Identities=26% Similarity=0.338 Sum_probs=164.3
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
++|++|++++|.+++..|..++++++|++|++++|.+....+.. +.++++|++|++++|.+.... +..+..+++|++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~ 216 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQI--PRELGQMKSLKW 216 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCcCcC--ChHHcCcCCccE
Confidence 45556666666655556666666666666666666543222221 455666666666666554431 124555666666
Q ss_pred EEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCC
Q 040144 82 LRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLN 161 (289)
Q Consensus 82 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 161 (289)
|++++|.+....+..++.+++|+.|++++|.++ ...+..++.+++|++|++++|.+.+.+ |..+..+++|++|++++|
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT-GPIPSSLGNLKNLQYLFLYQNKLSGPI-PPSIFSLQKLISLDLSDN 294 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceec-cccChhHhCCCCCCEEECcCCeeeccC-chhHhhccCcCEEECcCC
Confidence 666666665555555556666666666666554 445555555666666666666555444 445555556666666655
Q ss_pred CcccCCCCcccc-ccCcceeeccc------------------cccccCCcccccccccccCCCCCcEEEccCCeeeecCC
Q 040144 162 TGLTGRIPRSMA-LCNLKSINLQE------------------SLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIP 222 (289)
Q Consensus 162 ~~~~~~~~~~~~-~~~L~~L~l~~------------------~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 222 (289)
. +.+..|..+. +++|+.|+++. .+++++|.+.+.+|..++.+++|+.|++++|.+.+.+|
T Consensus 295 ~-l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 295 S-LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred e-eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC
Confidence 5 4445555555 55555555422 23345666666666666666666666666666665554
Q ss_pred Cce-------EEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCccccccccEEecccccCccCCC
Q 040144 223 WSF-------ELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIGSRFP 288 (289)
Q Consensus 223 ~~~-------~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p 288 (289)
..+ .+++.+|.+.+.+|. .+..+++|+.|++++|++++..|..+..+++|+.+++++|++++.+|
T Consensus 374 ~~~~~~~~L~~L~l~~n~l~~~~p~-~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 445 (968)
T PLN00113 374 EGLCSSGNLFKLILFSNSLEGEIPK-SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRIN 445 (968)
T ss_pred hhHhCcCCCCEEECcCCEecccCCH-HHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccC
Confidence 433 566666666655665 66666777777777777776666666666666666666666665444
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.98 E-value=1.6e-31 Score=251.89 Aligned_cols=283 Identities=26% Similarity=0.309 Sum_probs=192.1
Q ss_pred CCCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCcc
Q 040144 1 MGNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLV 80 (289)
Q Consensus 1 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 80 (289)
+++|++|++.+|.+++..|..+.++++|++|++++|.+....+.. +.++++|++|++++|.+....+ ..+..+++|+
T Consensus 259 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~ 335 (968)
T PLN00113 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL-VIQLQNLEILHLFSNNFTGKIP--VALTSLPRLQ 335 (968)
T ss_pred CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh-HcCCCCCcEEECCCCccCCcCC--hhHhcCCCCC
Confidence 356677777777776666666777777777777766544322211 4456666666666665544311 1444555556
Q ss_pred EEEccCCccCCCCcccccCCCCCcEEeccCCCCCC-----------------------cchhhHhhcCCCCCEEEccCce
Q 040144 81 ELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDN-----------------------SFILSWVFALSHLPFLDLGFNN 137 (289)
Q Consensus 81 ~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~-----------------------~~~~~~~~~~~~L~~L~l~~n~ 137 (289)
.|++.+|.+....+..++.+++|+.|++++|.++. ...+..+..+++|+.|++.+|.
T Consensus 336 ~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~ 415 (968)
T PLN00113 336 VLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS 415 (968)
T ss_pred EEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE
Confidence 66665555554444444445555555555444430 3344455566667777777777
Q ss_pred eeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccc-----------------cccccCCcccccccc
Q 040144 138 FQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQE-----------------SLDMRSSSIYGHLTD 199 (289)
Q Consensus 138 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~-----------------~l~l~~~~~~~~~~~ 199 (289)
+.+.. |..+..++.|+.+++++|. +.+..|..+. +++|+.|+++. .+++++|.+.+..|.
T Consensus 416 l~~~~-p~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~ 493 (968)
T PLN00113 416 FSGEL-PSEFTKLPLVYFLDISNNN-LQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPR 493 (968)
T ss_pred eeeEC-ChhHhcCCCCCEEECcCCc-ccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccCh
Confidence 76555 5666777777777777776 6655555555 66777766653 466677888777888
Q ss_pred cccCCCCCcEEEccCCeeeecCCCce-------EEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCcccccc
Q 040144 200 QLGQFRNLVTFNLVNNSIVGFIPWSF-------ELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQ 272 (289)
Q Consensus 200 ~l~~~~~L~~L~l~~n~~~~~~~~~~-------~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~ 272 (289)
.+..+++|+.|++++|.+.+.+|..+ .|++++|.+++.+|. .+.++++|+.|++++|++.+.+|..+..+++
T Consensus 494 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 572 (968)
T PLN00113 494 KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA-SFSEMPVLSQLDLSQNQLSGEIPKNLGNVES 572 (968)
T ss_pred hhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCCh-hHhCcccCCEEECCCCcccccCChhHhcCcc
Confidence 88888888888888888887776554 788888888888888 8888888999999999888888888888888
Q ss_pred ccEEecccccCccCCCC
Q 040144 273 LVALGLHSCYIGSRFPL 289 (289)
Q Consensus 273 L~~l~l~~n~~~~~~p~ 289 (289)
|+.+++++|++.+.+|.
T Consensus 573 L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 573 LVQVNISHNHLHGSLPS 589 (968)
T ss_pred cCEEeccCCcceeeCCC
Confidence 99999999988888874
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=7e-28 Score=201.15 Aligned_cols=271 Identities=24% Similarity=0.259 Sum_probs=137.4
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
+-|+.|+|+.|.|+...-++|..=.++++|++++|.+..+.... |.++..|..|.|++|.++..+. ..|+++++|+.
T Consensus 149 ~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~-F~~lnsL~tlkLsrNrittLp~--r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 149 PALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGH-FDSLNSLLTLKLSRNRITTLPQ--RSFKRLPKLES 225 (873)
T ss_pred hhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccc-ccccchheeeecccCcccccCH--HHhhhcchhhh
Confidence 44666677776666444444555556677777766666655443 5566666666666666666532 15556666666
Q ss_pred EEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCC
Q 040144 82 LRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLN 161 (289)
Q Consensus 82 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 161 (289)
|++..|.+...-...|.++++|+.|.+.+|.+. ...-..|..+.++++|++..|++.. +....+.+++.|+.|++++|
T Consensus 226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~-vn~g~lfgLt~L~~L~lS~N 303 (873)
T KOG4194|consen 226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQA-VNEGWLFGLTSLEQLDLSYN 303 (873)
T ss_pred hhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhh-hhcccccccchhhhhccchh
Confidence 666666655443344555555555555555553 1111223345555555555555542 21334445555555555555
Q ss_pred CcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCce-------EEEeecce
Q 040144 162 TGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF-------ELHIYDNK 233 (289)
Q Consensus 162 ~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~-------~L~l~~n~ 233 (289)
. +....++.|. ++.|+.|++ +.|.++...+.+|..+..|+.|+++.|.+.-.-...+ .|||++|.
T Consensus 304 a-I~rih~d~WsftqkL~~LdL------s~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 304 A-IQRIHIDSWSFTQKLKELDL------SSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE 376 (873)
T ss_pred h-hheeecchhhhcccceeEec------cccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe
Confidence 5 4434444455 555555554 4444444444444444445555554444431111111 44444444
Q ss_pred eeeeecc--ccccccccccEEEecCCeeeeccCCCccccccccEEecccccCc
Q 040144 234 LNVTLFE--LHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIG 284 (289)
Q Consensus 234 ~~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~ 284 (289)
++..+-+ ..|.++++|+.|++-+|++....-..|..+..|++||+.+|.|.
T Consensus 377 ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 377 LSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred EEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcce
Confidence 4322221 13344555555555555555433334455555555555555443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=2.3e-27 Score=198.10 Aligned_cols=273 Identities=23% Similarity=0.239 Sum_probs=164.7
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
|+|+++++..|.++ .+|.......+++.|++..|.+..+.... ++.++.|+.|||+.|.+...+. ..+..-.++++
T Consensus 102 ~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~-L~~l~alrslDLSrN~is~i~~--~sfp~~~ni~~ 177 (873)
T KOG4194|consen 102 PNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEE-LSALPALRSLDLSRNLISEIPK--PSFPAKVNIKK 177 (873)
T ss_pred Ccceeeeeccchhh-hcccccccccceeEEeeeccccccccHHH-HHhHhhhhhhhhhhchhhcccC--CCCCCCCCceE
Confidence 55666666665554 34443333344555555555444443322 3444555555555554444321 02223334555
Q ss_pred EEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeee---------------------
Q 040144 82 LRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQG--------------------- 140 (289)
Q Consensus 82 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--------------------- 140 (289)
|++++|.++.+....|..+.+|..|.+++|+++ ..-+..|.++++|+.|++..|.+..
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~ 256 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND 256 (873)
T ss_pred EeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcC
Confidence 555555554444444444444444555555444 2222333344445555444444431
Q ss_pred --eeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCee
Q 040144 141 --TIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSI 217 (289)
Q Consensus 141 --~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 217 (289)
.+...+|..+.++++|+++.|. +...-..++. ++.|+.|+ ++.|.+..+-++++.-+++|++|+++.|.+
T Consensus 257 I~kL~DG~Fy~l~kme~l~L~~N~-l~~vn~g~lfgLt~L~~L~------lS~NaI~rih~d~WsftqkL~~LdLs~N~i 329 (873)
T KOG4194|consen 257 ISKLDDGAFYGLEKMEHLNLETNR-LQAVNEGWLFGLTSLEQLD------LSYNAIQRIHIDSWSFTQKLKELDLSSNRI 329 (873)
T ss_pred cccccCcceeeecccceeecccch-hhhhhcccccccchhhhhc------cchhhhheeecchhhhcccceeEecccccc
Confidence 2223445555555666665555 4433333444 55555555 589999888888888999999999999999
Q ss_pred eecCCCce-------EEEeecceeeeeeccccccccccccEEEecCCeeeeccCC---CccccccccEEecccccCccCC
Q 040144 218 VGFIPWSF-------ELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKH---DWIPHFQLVALGLHSCYIGSRF 287 (289)
Q Consensus 218 ~~~~~~~~-------~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~---~~~~~~~L~~l~l~~n~~~~~~ 287 (289)
+..-+..+ +|.|+.|.+. .+.+..|..+++|++|+|++|.+...+-+ .|..+++|+.|.+.||++. .|
T Consensus 330 ~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I 407 (873)
T KOG4194|consen 330 TRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SI 407 (873)
T ss_pred ccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ec
Confidence 86555555 8999999998 56655888999999999999998876555 4667899999999999995 55
Q ss_pred C
Q 040144 288 P 288 (289)
Q Consensus 288 p 288 (289)
|
T Consensus 408 ~ 408 (873)
T KOG4194|consen 408 P 408 (873)
T ss_pred c
Confidence 5
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=8.6e-26 Score=190.63 Aligned_cols=263 Identities=25% Similarity=0.290 Sum_probs=217.1
Q ss_pred CCCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCcc
Q 040144 1 MGNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLV 80 (289)
Q Consensus 1 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 80 (289)
|..|+.|+|+.|++. ..|..+...+++-.|++++|++..++... +.++..|-.|+|++|.+...|+ ..+++.+|+
T Consensus 102 l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~l-finLtDLLfLDLS~NrLe~LPP---Q~RRL~~Lq 176 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSL-FINLTDLLFLDLSNNRLEMLPP---QIRRLSMLQ 176 (1255)
T ss_pred cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchH-HHhhHhHhhhccccchhhhcCH---HHHHHhhhh
Confidence 346778888888876 47777788888888888888887777554 5678888899999999888877 788899999
Q ss_pred EEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCC
Q 040144 81 ELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSL 160 (289)
Q Consensus 81 ~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 160 (289)
+|.+++|.+.......+-.+.+|+.|.+++++-+-..+|..+..+.+|..++++.|++. .+ |+.+.++.+|+.|++++
T Consensus 177 tL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v-Pecly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 177 TLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV-PECLYKLRNLRRLNLSG 254 (1255)
T ss_pred hhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc-hHHHhhhhhhheeccCc
Confidence 99999998876544445556677788888876664567888888999999999999987 55 89999999999999999
Q ss_pred CCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeee-cCCCce-------EEEeec
Q 040144 161 NTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVG-FIPWSF-------ELHIYD 231 (289)
Q Consensus 161 n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~-~~~~~~-------~L~l~~ 231 (289)
|. ++ ++..... ..+|++|++ +.|+++ .+|+++..+++|+.|-..+|++.- -+|..+ .+...+
T Consensus 255 N~-it-eL~~~~~~W~~lEtLNl------SrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan 325 (1255)
T KOG0444|consen 255 NK-IT-ELNMTEGEWENLETLNL------SRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN 325 (1255)
T ss_pred Cc-ee-eeeccHHHHhhhhhhcc------ccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc
Confidence 98 54 4555555 778888876 899998 788899999999999999998863 467766 678888
Q ss_pred ceeeeeeccccccccccccEEEecCCeeeeccCCCccccccccEEeccccc
Q 040144 232 NKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCY 282 (289)
Q Consensus 232 n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~ 282 (289)
|.+. -.|. .++.|.+|+.|.++.|++-. +|+.+.-++.|..||++.|.
T Consensus 326 N~LE-lVPE-glcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 326 NKLE-LVPE-GLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred cccc-cCch-hhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCc
Confidence 8886 6787 99999999999999999985 89999999999999999883
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=2.2e-25 Score=188.14 Aligned_cols=266 Identities=21% Similarity=0.260 Sum_probs=164.8
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
.+|++|.+..|+++. +-..+..++.|+.+.+..|+....+.+..+..+..|+.|+|++|++...|. .+....++.+
T Consensus 55 qkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~---~LE~AKn~iV 130 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLIS-VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPT---NLEYAKNSIV 130 (1255)
T ss_pred hhhhhhhhhhhhhHh-hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcch---hhhhhcCcEE
Confidence 345556666665542 334455566666666666554433333335566666666666666666554 5556666666
Q ss_pred EEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCC
Q 040144 82 LRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLN 161 (289)
Q Consensus 82 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 161 (289)
|++++|++..++...+.++..|-.|+++.|++. .+|..+..+..|+.|.+++|.+. .+-...+-.+++|+.|.+++.
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe--~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~T 207 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE--MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNT 207 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccchhh--hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccc
Confidence 666666666665555556666666666666663 45555566666666666666654 211223334455556666554
Q ss_pred CcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCce-------EEEeecce
Q 040144 162 TGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF-------ELHIYDNK 233 (289)
Q Consensus 162 ~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~-------~L~l~~n~ 233 (289)
+.-...+|..+. +.+|..++ ++.|.+. ..|..+-.+++|+.|++++|+++. +.... +|+++.|+
T Consensus 208 qRTl~N~Ptsld~l~NL~dvD------lS~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQ 279 (1255)
T KOG0444|consen 208 QRTLDNIPTSLDDLHNLRDVD------LSENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQ 279 (1255)
T ss_pred cchhhcCCCchhhhhhhhhcc------ccccCCC-cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccch
Confidence 422234555555 55666555 4778777 677778888899999999998873 22222 78888998
Q ss_pred eeeeeccccccccccccEEEecCCeeee-ccCCCccccccccEEecccccCc
Q 040144 234 LNVTLFELHFANLIEMSWFRVGGNQLTL-EVKHDWIPHFQLVALGLHSCYIG 284 (289)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~~~~~~~L~~l~l~~n~~~ 284 (289)
++ .+|. .++.+++|+.|.+.+|+++- .+|.+++++..|+++...+|.+.
T Consensus 280 Lt-~LP~-avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE 329 (1255)
T KOG0444|consen 280 LT-VLPD-AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE 329 (1255)
T ss_pred hc-cchH-HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc
Confidence 88 6888 88888888888888886542 25666666666666666666553
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=6.7e-24 Score=170.24 Aligned_cols=95 Identities=19% Similarity=0.246 Sum_probs=64.9
Q ss_pred ccccCCcccccccccccCCCCCcEEEccCCeeeecCCCce-------EEEeecceeeeeeccccccccccccEEEecCCe
Q 040144 186 LDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF-------ELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQ 258 (289)
Q Consensus 186 l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~-------~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~ 258 (289)
+++++|.+. .+|..++.+..|+.|+++.|++. .+|+.+ .+-.++|++. +++..-+.+|.+|..|++.+|.
T Consensus 440 L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~-~vd~~~l~nm~nL~tLDL~nNd 516 (565)
T KOG0472|consen 440 LDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIG-SVDPSGLKNMRNLTTLDLQNND 516 (565)
T ss_pred eecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccccc-ccChHHhhhhhhcceeccCCCc
Confidence 333333333 33444444555555565555554 444444 2333445555 6776348899999999999999
Q ss_pred eeeccCCCccccccccEEecccccCc
Q 040144 259 LTLEVKHDWIPHFQLVALGLHSCYIG 284 (289)
Q Consensus 259 ~~~~~~~~~~~~~~L~~l~l~~n~~~ 284 (289)
+.. +|..++++++|++|+++||.|.
T Consensus 517 lq~-IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 517 LQQ-IPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhh-CChhhccccceeEEEecCCccC
Confidence 994 8999999999999999999996
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.81 E-value=1.7e-18 Score=164.90 Aligned_cols=120 Identities=17% Similarity=0.230 Sum_probs=65.9
Q ss_pred CccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCc---e-E
Q 040144 152 SINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWS---F-E 226 (289)
Q Consensus 152 ~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~---~-~ 226 (289)
+|+.|++++|. ....+|..+. +++|+.|++ ++|.....+|..+ .+++|+.|++++|.....+|.. + .
T Consensus 779 sL~~L~Ls~n~-~l~~lP~si~~L~~L~~L~L------s~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~ 850 (1153)
T PLN03210 779 SLTRLFLSDIP-SLVELPSSIQNLHKLEHLEI------ENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISD 850 (1153)
T ss_pred cchheeCCCCC-CccccChhhhCCCCCCEEEC------CCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCE
Confidence 34444444443 2333444444 444444443 3333222333322 3455555555554332222221 1 6
Q ss_pred EEeecceeeeeeccccccccccccEEEecCCeeeeccCCCccccccccEEecccc
Q 040144 227 LHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSC 281 (289)
Q Consensus 227 L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 281 (289)
|++.+|.+. .+|. ++..+++|+.|++++|+-...+|..+..+++|+.+++++|
T Consensus 851 L~Ls~n~i~-~iP~-si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 851 LNLSRTGIE-EVPW-WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred eECCCCCCc-cChH-HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 777777776 5777 7778888888888775433346777777788888888877
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.79 E-value=4.1e-18 Score=162.28 Aligned_cols=271 Identities=19% Similarity=0.182 Sum_probs=149.8
Q ss_pred CCCCcEEEccCCc------ccccCCCccCCCC-CCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhh
Q 040144 1 MGNLRYLNFSKTR------ICGIIPQQLGNLS-NLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVA 73 (289)
Q Consensus 1 ~~~L~~L~l~~~~------~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 73 (289)
|++|+.|.+..+. +...+|..+..++ +|+.|.+.++.....+.. + .+.+|+.|++.++.+...+. .+
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~--f-~~~~L~~L~L~~s~l~~L~~---~~ 630 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN--F-RPENLVKLQMQGSKLEKLWD---GV 630 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCc--C-CccCCcEEECcCcccccccc---cc
Confidence 4555666554332 1223444444443 455555555443333321 1 24455555555555444332 34
Q ss_pred hcCCCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCC--
Q 040144 74 NKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLT-- 151 (289)
Q Consensus 74 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-- 151 (289)
..+++|+.++++++......+ .++.+++|+.|++.+|... ..+|..+..+.+|+.|++++|...+.+ |..+ +++
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~L-p~~i-~l~sL 706 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCENLEIL-PTGI-NLKSL 706 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCCCcCcc-CCcC-CCCCC
Confidence 445555555555543222212 2444555555555554332 334444455555555555554322233 2211 333
Q ss_pred -------------------CccEEeCCCCCcccCCCCccccccCcceeeccc-------------------------ccc
Q 040144 152 -------------------SINRLDLSLNTGLTGRIPRSMALCNLKSINLQE-------------------------SLD 187 (289)
Q Consensus 152 -------------------~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~-------------------------~l~ 187 (289)
+|++|++++|. +. .+|..+.+++|++|.+.. .+.
T Consensus 707 ~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~-i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~ 784 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPDISTNISWLDLDETA-IE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLF 784 (1153)
T ss_pred CEEeCCCCCCccccccccCCcCeeecCCCc-cc-cccccccccccccccccccchhhccccccccchhhhhccccchhee
Confidence 44555555554 22 344332233444333321 234
Q ss_pred ccCCcccccccccccCCCCCcEEEccCCeeeecCCCce------EEEeecceeeeeeccccccccccccEEEecCCeeee
Q 040144 188 MRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF------ELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTL 261 (289)
Q Consensus 188 l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~------~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 261 (289)
+++|.....+|.+++++++|+.|++++|...+.+|..+ .|++++|.....+|. ..++|+.|++++|.+..
T Consensus 785 Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~----~~~nL~~L~Ls~n~i~~ 860 (1153)
T PLN03210 785 LSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD----ISTNISDLNLSRTGIEE 860 (1153)
T ss_pred CCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc----cccccCEeECCCCCCcc
Confidence 56776666788889999999999999886544555443 788888865445555 24689999999999984
Q ss_pred ccCCCccccccccEEecccccCccCCC
Q 040144 262 EVKHDWIPHFQLVALGLHSCYIGSRFP 288 (289)
Q Consensus 262 ~~~~~~~~~~~L~~l~l~~n~~~~~~p 288 (289)
+|..+..+++|+.|++++|+--..+|
T Consensus 861 -iP~si~~l~~L~~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 861 -VPWWIEKFSNLSFLDMNGCNNLQRVS 886 (1153)
T ss_pred -ChHHHhcCCCCCEEECCCCCCcCccC
Confidence 88889999999999999974333444
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.78 E-value=2.3e-18 Score=154.19 Aligned_cols=241 Identities=19% Similarity=0.120 Sum_probs=141.7
Q ss_pred cEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhh-----------
Q 040144 5 RYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVA----------- 73 (289)
Q Consensus 5 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~----------- 73 (289)
..|+++++.++ .+|+.+. ++|+.|++.+|.+..++. .+++|++|++++|.+...+..+..+
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP~-----lp~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLT 275 (788)
T ss_pred cEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCCCC-----CCCCCcEEEecCCccCcccCcccccceeeccCCchh
Confidence 35666666665 3555443 255666666655544331 1355666666666555443210000
Q ss_pred ---hcCCCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCC
Q 040144 74 ---NKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNL 150 (289)
Q Consensus 74 ---~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 150 (289)
.....|+.|++.+|.++.++. ..++|+.|++++|.++ .++.. ...|+.|++++|.+. .+ |. ..
T Consensus 276 ~Lp~lp~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~--~Lp~l---p~~L~~L~Ls~N~L~-~L-P~---lp 341 (788)
T PRK15387 276 HLPALPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLA--SLPAL---PSELCKLWAYNNQLT-SL-PT---LP 341 (788)
T ss_pred hhhhchhhcCEEECcCCccccccc----cccccceeECCCCccc--cCCCC---cccccccccccCccc-cc-cc---cc
Confidence 001234445555554443321 1245666666666554 22221 234555666666555 33 32 12
Q ss_pred CCccEEeCCCCCcccCCCCccccccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCce----E
Q 040144 151 TSINRLDLSLNTGLTGRIPRSMALCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF----E 226 (289)
Q Consensus 151 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~----~ 226 (289)
.+|+.|++++|. +. .+|.. ..+|+.|++ ++|.+.. +|.. ..+|+.|++++|.+++ +|... .
T Consensus 342 ~~Lq~LdLS~N~-Ls-~LP~l--p~~L~~L~L------s~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l~s~L~~ 406 (788)
T PRK15387 342 SGLQELSVSDNQ-LA-SLPTL--PSELYKLWA------YNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVLPSELKE 406 (788)
T ss_pred cccceEecCCCc-cC-CCCCC--Ccccceehh------hcccccc-Cccc---ccccceEEecCCcccC-CCCcccCCCE
Confidence 467788888777 54 34432 244555544 6777764 4432 2478999999998874 43322 8
Q ss_pred EEeecceeeeeeccccccccccccEEEecCCeeeeccCCCccccccccEEecccccCccCCC
Q 040144 227 LHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIGSRFP 288 (289)
Q Consensus 227 L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p 288 (289)
|++++|.++ .+|. . ..+|+.|++++|.++ .+|..++++++|+.+++++|.+++..|
T Consensus 407 LdLS~N~Ls-sIP~-l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 407 LMVSGNRLT-SLPM-L---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred EEccCCcCC-CCCc-c---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 899999988 5776 3 357888999999998 488889999999999999999987654
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=9.8e-22 Score=157.89 Aligned_cols=243 Identities=26% Similarity=0.272 Sum_probs=152.4
Q ss_pred ccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCC
Q 040144 21 QLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNF 100 (289)
Q Consensus 21 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 100 (289)
.+|.-..++.+.++.|........ +.++..++.+++.++.+...++ .+..+..++.++.+++.+... |+.++..
T Consensus 40 ~wW~qv~l~~lils~N~l~~l~~d--l~nL~~l~vl~~~~n~l~~lp~---aig~l~~l~~l~vs~n~ls~l-p~~i~s~ 113 (565)
T KOG0472|consen 40 NWWEQVDLQKLILSHNDLEVLRED--LKNLACLTVLNVHDNKLSQLPA---AIGELEALKSLNVSHNKLSEL-PEQIGSL 113 (565)
T ss_pred hhhhhcchhhhhhccCchhhccHh--hhcccceeEEEeccchhhhCCH---HHHHHHHHHHhhcccchHhhc-cHHHhhh
Confidence 345555667777777665544433 5667777777777777776655 566666677777777776654 4555666
Q ss_pred CCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCccccccCccee
Q 040144 101 SSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMALCNLKSI 180 (289)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 180 (289)
..+..++.++|.+. +.+..++.+..+..++..+|+++ +. |+.+..+.++..+++.+|. +....|..++++.|+.+
T Consensus 114 ~~l~~l~~s~n~~~--el~~~i~~~~~l~dl~~~~N~i~-sl-p~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~l 188 (565)
T KOG0472|consen 114 ISLVKLDCSSNELK--ELPDSIGRLLDLEDLDATNNQIS-SL-PEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHL 188 (565)
T ss_pred hhhhhhhcccccee--ecCchHHHHhhhhhhhccccccc-cC-chHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhc
Confidence 77777777777664 55566666667777777777766 45 5566666667777777776 44333333335566655
Q ss_pred eccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCce------EEEeecceeeeeeccccccccccccEEEe
Q 040144 181 NLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF------ELHIYDNKLNVTLFELHFANLIEMSWFRV 254 (289)
Q Consensus 181 ~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~------~L~l~~n~~~~~~~~~~~~~~~~L~~l~l 254 (289)
+. ..|.+ +.+|..++.+.+|.-|.+..|++. .+|..- ++++..|.+. .+|.....+++++..||+
T Consensus 189 d~------~~N~L-~tlP~~lg~l~~L~~LyL~~Nki~-~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDL 259 (565)
T KOG0472|consen 189 DC------NSNLL-ETLPPELGGLESLELLYLRRNKIR-FLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDL 259 (565)
T ss_pred cc------chhhh-hcCChhhcchhhhHHHHhhhcccc-cCCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeec
Confidence 53 23333 355555666666666666666665 333211 5666666665 456544556777777777
Q ss_pred cCCeeeeccCCCccccccccEEecccccCc
Q 040144 255 GGNQLTLEVKHDWIPHFQLVALGLHSCYIG 284 (289)
Q Consensus 255 ~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~ 284 (289)
.+|+++ +.|+.++.+++|+.||+|+|.|+
T Consensus 260 RdNklk-e~Pde~clLrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 260 RDNKLK-EVPDEICLLRSLERLDLSNNDIS 288 (565)
T ss_pred cccccc-cCchHHHHhhhhhhhcccCCccc
Confidence 777777 36777777777777777777776
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.73 E-value=3.5e-20 Score=148.61 Aligned_cols=269 Identities=22% Similarity=0.207 Sum_probs=158.6
Q ss_pred CcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccC-ccccccchhhHhhhcCCCccEE
Q 040144 4 LRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRY-VNLSIAFDWLMVANKLLSLVEL 82 (289)
Q Consensus 4 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L 82 (289)
.++++|..|.|+...+.+|+.+++|++||++.|.+..+.+.. +++++.+.+|.+.+ |+++..+. ..|..+..++.|
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~A-F~GL~~l~~Lvlyg~NkI~~l~k--~~F~gL~slqrL 145 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDA-FKGLASLLSLVLYGNNKITDLPK--GAFGGLSSLQRL 145 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHh-hhhhHhhhHHHhhcCCchhhhhh--hHhhhHHHHHHH
Confidence 456777778877777777888888888888887777666554 67777776666655 66666643 256677777777
Q ss_pred EccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhh-HhhcCCCCCEEEccCceeeee-----------eChhhhcCC
Q 040144 83 RLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILS-WVFALSHLPFLDLGFNNFQGT-----------IDLEALGNL 150 (289)
Q Consensus 83 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~-----------~~~~~~~~~ 150 (289)
.+.-|.+.-+....|..++++..|.+.+|.+. .+.. .+..+..++.+++.-|..... ..+..++..
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q--~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQ--SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhh--hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 77777666665666777777777777777664 2332 455556666666555542100 001112221
Q ss_pred CCccEEeCCCCCcccCCCCccccccCcceeeccccccccCCccccccc-ccccCCCCCcEEEccCCeeeecCCCce----
Q 040144 151 TSINRLDLSLNTGLTGRIPRSMALCNLKSINLQESLDMRSSSIYGHLT-DQLGQFRNLVTFNLVNNSIVGFIPWSF---- 225 (289)
Q Consensus 151 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~---- 225 (289)
.-.....+.+.+ +....+..+. ..++.+.- -..+.+...++.| ..|..+++|++|++++|+++..-+..+
T Consensus 224 rc~~p~rl~~~R-i~q~~a~kf~-c~~esl~s---~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a 298 (498)
T KOG4237|consen 224 RCVSPYRLYYKR-INQEDARKFL-CSLESLPS---RLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA 298 (498)
T ss_pred eecchHHHHHHH-hcccchhhhh-hhHHhHHH---hhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh
Confidence 111222222222 1111111221 11221100 0012333333322 346677777777777777765444444
Q ss_pred ---EEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCccccccccEEecccccC
Q 040144 226 ---ELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYI 283 (289)
Q Consensus 226 ---~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~ 283 (289)
.|.|..|++. .+....|.++..|+.|++.+|+|+...|-.|.+..+|.+|++-.|.+
T Consensus 299 ~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 299 ELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 6677777765 45544777888888888888888887777888888888888877755
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=1e-18 Score=145.30 Aligned_cols=269 Identities=22% Similarity=0.181 Sum_probs=159.9
Q ss_pred EEEccCCccc-ccCCCccCCCCCCcEEeCCCccccccCC---CcccCCCCcccEEeccCccccc--c--chhhHhhhcCC
Q 040144 6 YLNFSKTRIC-GIIPQQLGNLSNLQFLDLSSKYLLYVDN---FLWLSGISLLEHLDLRYVNLSI--A--FDWLMVANKLL 77 (289)
Q Consensus 6 ~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~--~--~~~~~~~~~~~ 77 (289)
.|+|..+.++ ......+..+++|++++++++.+..... ...+...+.+++++++++.+.. . ..+...+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4566666665 3334445566778888888876533211 1113456678888888776652 1 11233556678
Q ss_pred CccEEEccCCccCCCCcccccCC---CCCcEEeccCCCCCCcch---hhHhhcC-CCCCEEEccCceeeeee---Chhhh
Q 040144 78 SLVELRLSNCQLQHFSPLATVNF---SSLTMLDLSHNQFDNSFI---LSWVFAL-SHLPFLDLGFNNFQGTI---DLEAL 147 (289)
Q Consensus 78 ~L~~L~l~~~~l~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~---~~~~~~~-~~L~~L~l~~n~~~~~~---~~~~~ 147 (289)
+|+.|++++|.+....+..+..+ ++|+.|++++|.+++... ...+..+ ++|++|++++|.+++.. ....+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 88888888888765444444333 348888888887763222 2234455 78888888888876321 03345
Q ss_pred cCCCCccEEeCCCCCcccCCC----Ccccc-ccCcceeeccccccccCCccccc----ccccccCCCCCcEEEccCCeee
Q 040144 148 GNLTSINRLDLSLNTGLTGRI----PRSMA-LCNLKSINLQESLDMRSSSIYGH----LTDQLGQFRNLVTFNLVNNSIV 218 (289)
Q Consensus 148 ~~~~~L~~L~l~~n~~~~~~~----~~~~~-~~~L~~L~l~~~l~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~ 218 (289)
..+.+|++|++++|. +.+.. +..+. .++|+.|++ ++|.+.+. +...+..+++|+.|++++|.++
T Consensus 162 ~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L------~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 162 RANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDL------NNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEec------cCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 566788888888887 55322 22233 457777775 67766533 3344567788888888888877
Q ss_pred ec--------C----CCceEEEeecceeee----eeccccccccccccEEEecCCeeeec----cCCCcccc-ccccEEe
Q 040144 219 GF--------I----PWSFELHIYDNKLNV----TLFELHFANLIEMSWFRVGGNQLTLE----VKHDWIPH-FQLVALG 277 (289)
Q Consensus 219 ~~--------~----~~~~~L~l~~n~~~~----~~~~~~~~~~~~L~~l~l~~n~~~~~----~~~~~~~~-~~L~~l~ 277 (289)
+. . +....|++++|.++. .+.. .+..+++|+++++++|.+++. ....+... +.+++++
T Consensus 235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~-~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~ 313 (319)
T cd00116 235 DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE-VLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLW 313 (319)
T ss_pred hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHH-HHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcc
Confidence 42 1 122256666666541 2222 344556777777777777643 22222222 4566666
Q ss_pred ccccc
Q 040144 278 LHSCY 282 (289)
Q Consensus 278 l~~n~ 282 (289)
+.+|.
T Consensus 314 ~~~~~ 318 (319)
T cd00116 314 VKDDS 318 (319)
T ss_pred cCCCC
Confidence 66654
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.70 E-value=9.1e-17 Score=144.63 Aligned_cols=242 Identities=20% Similarity=0.221 Sum_probs=165.5
Q ss_pred CCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEE
Q 040144 3 NLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVEL 82 (289)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 82 (289)
+.+.|++.++.++. +|..+. ++++.|++++|.+...+.. + ..+|++|++++|.+...+. .+ ...|+.|
T Consensus 179 ~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~LtsLP~~--l--~~nL~~L~Ls~N~LtsLP~---~l--~~~L~~L 246 (754)
T PRK15370 179 NKTELRLKILGLTT-IPACIP--EQITTLILDNNELKSLPEN--L--QGNIKTLYANSNQLTSIPA---TL--PDTIQEM 246 (754)
T ss_pred CceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCCcCChh--h--ccCCCEEECCCCccccCCh---hh--hccccEE
Confidence 45678888888773 565442 4788999988877765532 1 3578999999888876543 22 2468889
Q ss_pred EccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCC
Q 040144 83 RLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNT 162 (289)
Q Consensus 83 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 162 (289)
++++|.+..+ |..+ ..+|+.|++++|.++ .+|..+ +.+|+.|++++|++. .+ |..+. ++|+.|++++|.
T Consensus 247 ~Ls~N~L~~L-P~~l--~s~L~~L~Ls~N~L~--~LP~~l--~~sL~~L~Ls~N~Lt-~L-P~~lp--~sL~~L~Ls~N~ 315 (754)
T PRK15370 247 ELSINRITEL-PERL--PSALQSLDLFHNKIS--CLPENL--PEELRYLSVYDNSIR-TL-PAHLP--SGITHLNVQSNS 315 (754)
T ss_pred ECcCCccCcC-ChhH--hCCCCEEECcCCccC--cccccc--CCCCcEEECCCCccc-cC-cccch--hhHHHHHhcCCc
Confidence 9999988765 3333 247889999988885 355433 257899999998887 45 43332 468888888887
Q ss_pred cccCCCCccccccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeee---cCCCce-EEEeecceeeeee
Q 040144 163 GLTGRIPRSMALCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVG---FIPWSF-ELHIYDNKLNVTL 238 (289)
Q Consensus 163 ~~~~~~~~~~~~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~---~~~~~~-~L~l~~n~~~~~~ 238 (289)
+. .+|..+ .++|+.|.+ ++|.++. +|..+. ++|+.|++++|.+.. .+|..+ .|++++|.++ .+
T Consensus 316 -Lt-~LP~~l-~~sL~~L~L------s~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt-~L 382 (754)
T PRK15370 316 -LT-ALPETL-PPGLKTLEA------GENALTS-LPASLP--PELQVLDVSKNQITVLPETLPPTITTLDVSRNALT-NL 382 (754)
T ss_pred -cc-cCCccc-cccceeccc------cCCcccc-CChhhc--CcccEEECCCCCCCcCChhhcCCcCEEECCCCcCC-CC
Confidence 55 344433 356777765 7777774 454442 688999999888872 122222 7888888887 57
Q ss_pred ccccccccccccEEEecCCeeeeccCCCcc----ccccccEEecccccCc
Q 040144 239 FELHFANLIEMSWFRVGGNQLTLEVKHDWI----PHFQLVALGLHSCYIG 284 (289)
Q Consensus 239 ~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~----~~~~L~~l~l~~n~~~ 284 (289)
|. .+. .+|+.|++++|++.+ +|..+. ..+.+..+++.+|.++
T Consensus 383 P~-~l~--~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 383 PE-NLP--AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CH-hHH--HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence 76 443 468888898888874 555443 3467788888888875
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.69 E-value=2.3e-18 Score=151.43 Aligned_cols=195 Identities=26% Similarity=0.309 Sum_probs=122.8
Q ss_pred CccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEe
Q 040144 78 SLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLD 157 (289)
Q Consensus 78 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 157 (289)
++++++++++.+.... ..++.+.+++.+++.+|+++ ..+..+....+|+.+.+..|.+. .+ +....+.+.|++|+
T Consensus 242 nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~--~lp~ri~~~~~L~~l~~~~nel~-yi-p~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLV--ALPLRISRITSLVSLSAAYNELE-YI-PPFLEGLKSLRTLD 316 (1081)
T ss_pred cceeeecchhhhhcch-HHHHhcccceEecccchhHH--hhHHHHhhhhhHHHHHhhhhhhh-hC-CCcccccceeeeee
Confidence 5666666666666553 55556666777776666663 44544555666666666666665 45 55566677788888
Q ss_pred CCCCCcccCCCCcccc--ccC-cceeeccc------------------cccccCCcccccccccccCCCCCcEEEccCCe
Q 040144 158 LSLNTGLTGRIPRSMA--LCN-LKSINLQE------------------SLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNS 216 (289)
Q Consensus 158 l~~n~~~~~~~~~~~~--~~~-L~~L~l~~------------------~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 216 (289)
+..|. +. .+|..+. ... |+.+..+. .+.+.+|.++......+.+.++|+.|+|+.|+
T Consensus 317 L~~N~-L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 317 LQSNN-LP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred ehhcc-cc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence 88776 43 3343222 111 22222221 56667888887766678888899999999998
Q ss_pred eeecCCCce--------EEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCccccccccEEecccccCc
Q 040144 217 IVGFIPWSF--------ELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIG 284 (289)
Q Consensus 217 ~~~~~~~~~--------~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~ 284 (289)
+.. +|... .|++++|.++ .+|+ .+.++..|+.|...+|.+.. .| .+.+++.|+.+|++.|.++
T Consensus 395 L~~-fpas~~~kle~LeeL~LSGNkL~-~Lp~-tva~~~~L~tL~ahsN~l~~-fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 395 LNS-FPASKLRKLEELEELNLSGNKLT-TLPD-TVANLGRLHTLRAHSNQLLS-FP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred ccc-CCHHHHhchHHhHHHhcccchhh-hhhH-HHHhhhhhHHHhhcCCceee-ch-hhhhcCcceEEecccchhh
Confidence 873 33333 7788888877 5776 66666666666666666663 44 5556666666666666554
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.69 E-value=5.7e-16 Score=139.01 Aligned_cols=154 Identities=18% Similarity=0.113 Sum_probs=99.3
Q ss_pred CCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEE
Q 040144 27 NLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTML 106 (289)
Q Consensus 27 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L 106 (289)
.-..|+++++.+..++.. + ..+|+.|++.+|.+...+. ..++|++|++++|.++.+.. ..++|+.|
T Consensus 202 ~~~~LdLs~~~LtsLP~~--l--~~~L~~L~L~~N~Lt~LP~------lp~~Lk~LdLs~N~LtsLP~----lp~sL~~L 267 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDC--L--PAHITTLVIPDNNLTSLPA------LPPELRTLEVSGNQLTSLPV----LPPGLLEL 267 (788)
T ss_pred CCcEEEcCCCCCCcCCcc--h--hcCCCEEEccCCcCCCCCC------CCCCCcEEEecCCccCcccC----ccccccee
Confidence 456789998877766542 2 2479999999999887654 24789999999999987632 24688889
Q ss_pred eccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCccccccCcceeeccccc
Q 040144 107 DLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMALCNLKSINLQESL 186 (289)
Q Consensus 107 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~l 186 (289)
++++|.++ .++.. +.+|+.|++++|++. .+ |. ..++|+.|++++|. +.. +|.. ...|+.|++
T Consensus 268 ~Ls~N~L~--~Lp~l---p~~L~~L~Ls~N~Lt-~L-P~---~p~~L~~LdLS~N~-L~~-Lp~l--p~~L~~L~L---- 329 (788)
T PRK15387 268 SIFSNPLT--HLPAL---PSGLCKLWIFGNQLT-SL-PV---LPPGLQELSVSDNQ-LAS-LPAL--PSELCKLWA---- 329 (788)
T ss_pred eccCCchh--hhhhc---hhhcCEEECcCCccc-cc-cc---cccccceeECCCCc-ccc-CCCC--ccccccccc----
Confidence 99888775 34432 356778888888876 44 33 24678888888887 553 3332 123444433
Q ss_pred cccCCcccccccccccCCCCCcEEEccCCeee
Q 040144 187 DMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIV 218 (289)
Q Consensus 187 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 218 (289)
++|.++. +|.. ..+|+.|++++|.+.
T Consensus 330 --s~N~L~~-LP~l---p~~Lq~LdLS~N~Ls 355 (788)
T PRK15387 330 --YNNQLTS-LPTL---PSGLQELSVSDNQLA 355 (788)
T ss_pred --ccCcccc-cccc---ccccceEecCCCccC
Confidence 4555542 2221 124555555555555
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=4.5e-18 Score=141.43 Aligned_cols=246 Identities=23% Similarity=0.147 Sum_probs=169.0
Q ss_pred EeCCCccccccCCCcccCCCCcccEEeccCcccccc--chhhHhhhcCCCccEEEccCCccCC------CCcccccCCCC
Q 040144 31 LDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIA--FDWLMVANKLLSLVELRLSNCQLQH------FSPLATVNFSS 102 (289)
Q Consensus 31 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~l~~------~~~~~l~~~~~ 102 (289)
|++.++..........+..+..|+.++++++.+... ..+...+...+.++++.+.++.+.. ..+..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 455555544333333345677799999999987553 2334466677889999999987762 11234567889
Q ss_pred CcEEeccCCCCCCcchhhHhhcCCC---CCEEEccCceeeeeeC---hhhhcCC-CCccEEeCCCCCcccCCC----Ccc
Q 040144 103 LTMLDLSHNQFDNSFILSWVFALSH---LPFLDLGFNNFQGTID---LEALGNL-TSINRLDLSLNTGLTGRI----PRS 171 (289)
Q Consensus 103 L~~L~l~~~~~~~~~~~~~~~~~~~---L~~L~l~~n~~~~~~~---~~~~~~~-~~L~~L~l~~n~~~~~~~----~~~ 171 (289)
|+.|++++|.+. ...+..+..+.. |++|++++|.+.+... ...+..+ ++|+.+++++|. +++.. +..
T Consensus 83 L~~L~l~~~~~~-~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~ 160 (319)
T cd00116 83 LQELDLSDNALG-PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKA 160 (319)
T ss_pred eeEEEccCCCCC-hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHH
Confidence 999999999886 344445555554 9999999998863210 2345566 899999999998 66332 223
Q ss_pred cc-ccCcceeeccccccccCCccccc----ccccccCCCCCcEEEccCCeeeecC-----------CCceEEEeecceee
Q 040144 172 MA-LCNLKSINLQESLDMRSSSIYGH----LTDQLGQFRNLVTFNLVNNSIVGFI-----------PWSFELHIYDNKLN 235 (289)
Q Consensus 172 ~~-~~~L~~L~l~~~l~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~-----------~~~~~L~l~~n~~~ 235 (289)
+. ++.|++|++ ++|.+++. ++..+..+++|+.|++++|.+.+.. +..-.|++++|.++
T Consensus 161 ~~~~~~L~~L~l------~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 161 LRANRDLKELNL------ANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHhCCCcCEEEC------cCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 33 567888876 77887743 3344566679999999999886432 12228999999887
Q ss_pred eeecccccc-c----cccccEEEecCCeeeec----cCCCccccccccEEecccccCcc
Q 040144 236 VTLFELHFA-N----LIEMSWFRVGGNQLTLE----VKHDWIPHFQLVALGLHSCYIGS 285 (289)
Q Consensus 236 ~~~~~~~~~-~----~~~L~~l~l~~n~~~~~----~~~~~~~~~~L~~l~l~~n~~~~ 285 (289)
+.... .+. . .+.|++|++++|.+++. ++..+...++|+.+++++|.+++
T Consensus 235 ~~~~~-~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 235 DAGAA-ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred hHHHH-HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 42222 222 2 37999999999998732 33455666889999999999874
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.66 E-value=1.3e-18 Score=152.89 Aligned_cols=105 Identities=24% Similarity=0.249 Sum_probs=61.7
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
+.++.|+...|.++. .... ..-.+|++++++.+.....+ .++..+.+|+.++..+|.+...+. .+....+|+.
T Consensus 219 ~~l~~L~a~~n~l~~-~~~~-p~p~nl~~~dis~n~l~~lp--~wi~~~~nle~l~~n~N~l~~lp~---ri~~~~~L~~ 291 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTT-LDVH-PVPLNLQYLDISHNNLSNLP--EWIGACANLEALNANHNRLVALPL---RISRITSLVS 291 (1081)
T ss_pred cchheeeeccCccee-eccc-cccccceeeecchhhhhcch--HHHHhcccceEecccchhHHhhHH---HHhhhhhHHH
Confidence 345666666666652 2111 11236777777777665555 225667777777777777644433 5555666666
Q ss_pred EEccCCccCCCCcccccCCCCCcEEeccCCCCC
Q 040144 82 LRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFD 114 (289)
Q Consensus 82 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 114 (289)
+...+|.+..+. ........|++|++..|.+.
T Consensus 292 l~~~~nel~yip-~~le~~~sL~tLdL~~N~L~ 323 (1081)
T KOG0618|consen 292 LSAAYNELEYIP-PFLEGLKSLRTLDLQSNNLP 323 (1081)
T ss_pred HHhhhhhhhhCC-Ccccccceeeeeeehhcccc
Confidence 666666666553 33445666666666666553
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.65 E-value=1.8e-18 Score=138.94 Aligned_cols=206 Identities=23% Similarity=0.255 Sum_probs=128.9
Q ss_pred CCCCcEEEccCCcccccCCCccCCCCCCcEEeCCC-ccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCc
Q 040144 1 MGNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSS-KYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSL 79 (289)
Q Consensus 1 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 79 (289)
+++||+|+|+.|+|+...|++|..++.+.+|-+.+ |++..++... +.++..++.|.+.-|++.-... ..+..++.+
T Consensus 90 l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~-F~gL~slqrLllNan~i~Cir~--~al~dL~~l 166 (498)
T KOG4237|consen 90 LHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA-FGGLSSLQRLLLNANHINCIRQ--DALRDLPSL 166 (498)
T ss_pred hhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH-hhhHHHHHHHhcChhhhcchhH--HHHHHhhhc
Confidence 46899999999999999999999999998888776 6676665444 6788888888777666544321 256667777
Q ss_pred cEEEccCCccCCCCcccccCCCCCcEEeccCCC------------------------------------CC---------
Q 040144 80 VELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQ------------------------------------FD--------- 114 (289)
Q Consensus 80 ~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~------------------------------------~~--------- 114 (289)
..|.+..|.+..+....+..+..++.+.+..|. +.
T Consensus 167 ~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c 246 (498)
T KOG4237|consen 167 SLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLC 246 (498)
T ss_pred chhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhh
Confidence 777777766554433333333333333332221 00
Q ss_pred ---------------Ccchh-hHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCc
Q 040144 115 ---------------NSFIL-SWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNL 177 (289)
Q Consensus 115 ---------------~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L 177 (289)
+...| ..|..+++|++|++++|++++ +...+|.+...+++|.+..|. +...-...|. +..|
T Consensus 247 ~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~-i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L 324 (498)
T KOG4237|consen 247 SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR-IEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGL 324 (498)
T ss_pred hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch-hhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccc
Confidence 00111 124445566666666666653 325566666666666666665 4322222333 5555
Q ss_pred ceeeccccccccCCcccccccccccCCCCCcEEEccCCee
Q 040144 178 KSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSI 217 (289)
Q Consensus 178 ~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 217 (289)
++|++ .+|.++...|.+|..+..|.+|++-.|.+
T Consensus 325 ~tL~L------~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 325 KTLSL------YDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred eeeee------cCCeeEEEecccccccceeeeeehccCcc
Confidence 55554 78888877788887777888888777664
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.64 E-value=5.1e-16 Score=139.87 Aligned_cols=222 Identities=18% Similarity=0.243 Sum_probs=165.6
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
++++.|++++|.++. +|..+. ++|++|++++|.+..++.. + ...|+.|++++|.+...+. .+. ..|+.
T Consensus 199 ~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~LtsLP~~--l--~~~L~~L~Ls~N~L~~LP~---~l~--s~L~~ 266 (754)
T PRK15370 199 EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTSIPAT--L--PDTIQEMELSINRITELPE---RLP--SALQS 266 (754)
T ss_pred cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccccCChh--h--hccccEEECcCCccCcCCh---hHh--CCCCE
Confidence 468999999999984 665543 5899999999987655432 2 3579999999999887654 332 47999
Q ss_pred EEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCC
Q 040144 82 LRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLN 161 (289)
Q Consensus 82 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 161 (289)
|++++|.+..+ |..+ .++|+.|++++|.++ .++..+ ..+|+.|++++|.+. .+ |..+ .++|+.|++++|
T Consensus 267 L~Ls~N~L~~L-P~~l--~~sL~~L~Ls~N~Lt--~LP~~l--p~sL~~L~Ls~N~Lt-~L-P~~l--~~sL~~L~Ls~N 335 (754)
T PRK15370 267 LDLFHNKISCL-PENL--PEELRYLSVYDNSIR--TLPAHL--PSGITHLNVQSNSLT-AL-PETL--PPGLKTLEAGEN 335 (754)
T ss_pred EECcCCccCcc-cccc--CCCCcEEECCCCccc--cCcccc--hhhHHHHHhcCCccc-cC-Cccc--cccceeccccCC
Confidence 99999998865 4333 258999999999986 344433 247899999999987 45 4333 368999999999
Q ss_pred CcccCCCCccccccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCce-----EEEeecceeee
Q 040144 162 TGLTGRIPRSMALCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF-----ELHIYDNKLNV 236 (289)
Q Consensus 162 ~~~~~~~~~~~~~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~-----~L~l~~n~~~~ 236 (289)
. +. .+|..+ .++|+.|++ ++|.+. .+|..+. ++|+.|++++|.+. .+|..+ .|++++|++.
T Consensus 336 ~-Lt-~LP~~l-~~sL~~L~L------s~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~~sL~~LdLs~N~L~- 401 (754)
T PRK15370 336 A-LT-SLPASL-PPELQVLDV------SKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLPAALQIMQASRNNLV- 401 (754)
T ss_pred c-cc-cCChhh-cCcccEEEC------CCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHHHHHHHHhhccCCcc-
Confidence 8 65 466544 467888876 888887 4555443 68999999999998 445444 7899999998
Q ss_pred eecccccc----ccccccEEEecCCeeee
Q 040144 237 TLFELHFA----NLIEMSWFRVGGNQLTL 261 (289)
Q Consensus 237 ~~~~~~~~----~~~~L~~l~l~~n~~~~ 261 (289)
.+|. .+. .++++..+++.+|++..
T Consensus 402 ~LP~-sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 402 RLPE-SLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred cCch-hHHHHhhcCCCccEEEeeCCCccH
Confidence 5665 443 45788999999999863
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=1.9e-17 Score=118.77 Aligned_cols=167 Identities=22% Similarity=0.393 Sum_probs=127.5
Q ss_pred hhhcCCCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCC
Q 040144 72 VANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLT 151 (289)
Q Consensus 72 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 151 (289)
.+..+.+++.|.+++|.++.+ +..+..+.+|+.|++++|+++ ..|..++.+++|+.|+++.|.+. .. |..|+.++
T Consensus 28 gLf~~s~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~-~l-prgfgs~p 102 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLN-IL-PRGFGSFP 102 (264)
T ss_pred cccchhhhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchhhhh-cC-ccccCCCc
Confidence 344566778888888888776 446678888888888888884 67878888888999998888876 55 78888889
Q ss_pred CccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCceEEEee
Q 040144 152 SINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIY 230 (289)
Q Consensus 152 ~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~ 230 (289)
.|+.||+.+|..-...+|..|+ +..|+.|.+ ++|.+. .+|..++.+++|+.|.++.|.+-
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl------~dndfe-~lp~dvg~lt~lqil~lrdndll------------ 163 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYL------GDNDFE-ILPPDVGKLTNLQILSLRDNDLL------------ 163 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHh------cCCCcc-cCChhhhhhcceeEEeeccCchh------------
Confidence 9999999888733456777777 777776665 778777 66777888889998888887666
Q ss_pred cceeeeeeccccccccccccEEEecCCeeeeccCCCcccc
Q 040144 231 DNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPH 270 (289)
Q Consensus 231 ~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 270 (289)
++|. .++.++.|++|.+.+|+++- +|..++.+
T Consensus 164 ------~lpk-eig~lt~lrelhiqgnrl~v-lppel~~l 195 (264)
T KOG0617|consen 164 ------SLPK-EIGDLTRLRELHIQGNRLTV-LPPELANL 195 (264)
T ss_pred ------hCcH-HHHHHHHHHHHhcccceeee-cChhhhhh
Confidence 5666 67777888888888888874 55554443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=7.2e-17 Score=115.83 Aligned_cols=151 Identities=27% Similarity=0.365 Sum_probs=78.7
Q ss_pred cCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCC
Q 040144 22 LGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFS 101 (289)
Q Consensus 22 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 101 (289)
+.++.+++.|.++.|+...+++. ++.+.+|+.|++.+|++...+. .+.+++.|+.|.+.-|.+... |..|+.+|
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppn--ia~l~nlevln~~nnqie~lp~---~issl~klr~lnvgmnrl~~l-prgfgs~p 102 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPN--IAELKNLEVLNLSNNQIEELPT---SISSLPKLRILNVGMNRLNIL-PRGFGSFP 102 (264)
T ss_pred ccchhhhhhhhcccCceeecCCc--HHHhhhhhhhhcccchhhhcCh---hhhhchhhhheecchhhhhcC-ccccCCCc
Confidence 33444555555555555444433 4455555555555555555544 555555555555555544322 44555555
Q ss_pred CCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCccee
Q 040144 102 SLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSI 180 (289)
Q Consensus 102 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L 180 (289)
.|+.||+++|.+.....|..+..+..|..|++++|.+. .+ |..++++++|+.|.+..|+ +. .+|..++ +..|++|
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~l-p~dvg~lt~lqil~lrdnd-ll-~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-IL-PPDVGKLTNLQILSLRDND-LL-SLPKEIGDLTRLREL 178 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cC-ChhhhhhcceeEEeeccCc-hh-hCcHHHHHHHHHHHH
Confidence 55555555555543344444444455555555555554 34 4455555555555555555 32 3455555 5555555
Q ss_pred ec
Q 040144 181 NL 182 (289)
Q Consensus 181 ~l 182 (289)
++
T Consensus 179 hi 180 (264)
T KOG0617|consen 179 HI 180 (264)
T ss_pred hc
Confidence 44
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=7.2e-14 Score=114.09 Aligned_cols=215 Identities=25% Similarity=0.223 Sum_probs=152.2
Q ss_pred CCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcc-cccCCC
Q 040144 23 GNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPL-ATVNFS 101 (289)
Q Consensus 23 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~l~~~~ 101 (289)
.++.+|++..+.++.+...+...+...|++++.|||++|-+.....+......+|+|+.|.++.|.+...... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 4677899999988776655543446789999999999998888755666778999999999999987643221 123568
Q ss_pred CCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCC-Ccccc-ccCcce
Q 040144 102 SLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRI-PRSMA-LCNLKS 179 (289)
Q Consensus 102 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~-~~~L~~ 179 (289)
+++.|.++.|.+++..+...+..+++++.|++.+|...... .....-++.|++|+|++|. +.+.. -...+ ++.|+.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~-~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIK-ATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccccee-cchhhhhhHHhhccccCCc-ccccccccccccccchhh
Confidence 89999999999886666666678999999999999422121 2233456789999999998 44322 13344 888887
Q ss_pred eeccccccccCCccccc-cccc-----ccCCCCCcEEEccCCeeeecCCCceEEEeecceeeeeeccccccccccccEEE
Q 040144 180 INLQESLDMRSSSIYGH-LTDQ-----LGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFR 253 (289)
Q Consensus 180 L~l~~~l~l~~~~~~~~-~~~~-----l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~ 253 (289)
|.+ +.+++... .|+. ...+++|+.|++..|++.+. + ++. .+..+.+|+.+.
T Consensus 276 Lnl------s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w-~--------------sl~--~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 276 LNL------SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW-R--------------SLN--HLRTLENLKHLR 332 (505)
T ss_pred hhc------cccCcchhcCCCccchhhhcccccceeeecccCccccc-c--------------ccc--hhhccchhhhhh
Confidence 775 77777643 2332 35678899999998888632 1 111 345567777777
Q ss_pred ecCCeeeec
Q 040144 254 VGGNQLTLE 262 (289)
Q Consensus 254 l~~n~~~~~ 262 (289)
+..|.+..+
T Consensus 333 ~~~n~ln~e 341 (505)
T KOG3207|consen 333 ITLNYLNKE 341 (505)
T ss_pred ccccccccc
Confidence 777777653
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.29 E-value=2.9e-13 Score=107.67 Aligned_cols=238 Identities=20% Similarity=0.172 Sum_probs=159.2
Q ss_pred CCCcEEEccCCccccc----CCCccCCCCCCcEEeCCCcccccc----CC-----CcccCCCCcccEEeccCcccccc--
Q 040144 2 GNLRYLNFSKTRICGI----IPQQLGNLSNLQFLDLSSKYLLYV----DN-----FLWLSGISLLEHLDLRYVNLSIA-- 66 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~----~~-----~~~~~~l~~L~~L~l~~~~~~~~-- 66 (289)
..++.++|++|.|... +.+.+...++|+..++++-.-... +. ...+..+++|++++|++|.+...
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 4578899999988632 334566778889888886321111 00 01245677999999999987554
Q ss_pred chhhHhhhcCCCccEEEccCCccCCCCccc-------------ccCCCCCcEEeccCCCCCCcc---hhhHhhcCCCCCE
Q 040144 67 FDWLMVANKLLSLVELRLSNCQLQHFSPLA-------------TVNFSSLTMLDLSHNQFDNSF---ILSWVFALSHLPF 130 (289)
Q Consensus 67 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-------------l~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~ 130 (289)
..+-..+.++..|++|.+.+|++....... ...-++|+++...+|++.+.. +...+...+.|+.
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee 189 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE 189 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence 334446678899999999999887532222 234578999999999886432 3344566788999
Q ss_pred EEccCceeeeee---ChhhhcCCCCccEEeCCCCCcccCCCC----cccc-ccCcceeeccccccccCCcccccccccc-
Q 040144 131 LDLGFNNFQGTI---DLEALGNLTSINRLDLSLNTGLTGRIP----RSMA-LCNLKSINLQESLDMRSSSIYGHLTDQL- 201 (289)
Q Consensus 131 L~l~~n~~~~~~---~~~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l- 201 (289)
+.+..|.+...- -..++..+++|+.||+.+|. ++.... ..+. +++|+.+.+ ++|.+......++
T Consensus 190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l------~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNL------GDCLLENEGAIAFV 262 (382)
T ss_pred EEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeecc------cccccccccHHHHH
Confidence 999988775221 13567788999999999997 654332 3334 666777765 7777754433222
Q ss_pred ----cCCCCCcEEEccCCeeeecCCCceEEEeecceeeeeeccccccccccccEEEecCCeee
Q 040144 202 ----GQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLT 260 (289)
Q Consensus 202 ----~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 260 (289)
...|+|+.|.+.+|.++.... ..+.. .....+.|+.|++++|++.
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~da~-------------~~la~-~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITRDAA-------------LALAA-CMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHhccCCCCceeccCcchhHHHHH-------------HHHHH-HHhcchhhHHhcCCccccc
Confidence 346788899888888763211 02233 5556889999999999984
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2e-12 Score=105.81 Aligned_cols=216 Identities=19% Similarity=0.173 Sum_probs=115.3
Q ss_pred CCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCc--ccccCCCCCcEEeccCCCCCCcchhhHhhcCC
Q 040144 49 GISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSP--LATVNFSSLTMLDLSHNQFDNSFILSWVFALS 126 (289)
Q Consensus 49 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 126 (289)
++++|+...|.++.+...+. -.....+++++.|++++|-+....+ .....+|+|+.|+++.|.+........-..++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~-~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGI-EEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccch-hhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 35566666666665444321 1244556666667766665544322 12234666666666666554111111112345
Q ss_pred CCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccc-cccccCC
Q 040144 127 HLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHL-TDQLGQF 204 (289)
Q Consensus 127 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~-~~~l~~~ 204 (289)
.++.|.++.|.++..........+|+++.|.+++|. .......... ++.|++|++ ++|++.... -...+.+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~-~~~~~~~~~~i~~~L~~LdL------s~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE-IILIKATSTKILQTLQELDL------SNNNLIDFDQGYKVGTL 270 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc-ccceecchhhhhhHHhhccc------cCCcccccccccccccc
Confidence 666666666666532212334456666677776663 1111111122 455555554 555554221 1234566
Q ss_pred CCCcEEEccCCeeeecCCCceEEEeecceeeeeeccccccccccccEEEecCCeeeeccC--CCccccccccEEeccccc
Q 040144 205 RNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVK--HDWIPHFQLVALGLHSCY 282 (289)
Q Consensus 205 ~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~--~~~~~~~~L~~l~l~~n~ 282 (289)
+.|..|+++.+.+.+. ..-.+ +.-. ....+++|++|+++.|.+.+ ++ ..+..+.+|+.+.+.+|+
T Consensus 271 ~~L~~Lnls~tgi~si-------~~~d~----~s~~-kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASI-------AEPDV----ESLD-KTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred cchhhhhccccCcchh-------cCCCc----cchh-hhcccccceeeecccCcccc-ccccchhhccchhhhhhccccc
Confidence 6666666666666522 11110 1111 23468999999999999974 33 356677788888888888
Q ss_pred Ccc
Q 040144 283 IGS 285 (289)
Q Consensus 283 ~~~ 285 (289)
++.
T Consensus 338 ln~ 340 (505)
T KOG3207|consen 338 LNK 340 (505)
T ss_pred ccc
Confidence 764
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=1.9e-11 Score=90.92 Aligned_cols=83 Identities=31% Similarity=0.309 Sum_probs=21.7
Q ss_pred CCCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHh-hcCCCCCEEEccCceeeeeeChhhhcCCCCcc
Q 040144 76 LLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWV-FALSHLPFLDLGFNNFQGTIDLEALGNLTSIN 154 (289)
Q Consensus 76 ~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 154 (289)
+.+|+.|++++|.+..+ +.+..++.|+.|++++|.++ .+...+ ..+++|++|++++|++...-.-..+..+++|+
T Consensus 41 l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~--~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~ 116 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS--SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLR 116 (175)
T ss_dssp -TT--EEE-TTS--S----TT----TT--EEE--SS-----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--
T ss_pred hcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC--ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcc
Confidence 34444455555544443 22334455555555555553 121112 23455555555555544211123344455555
Q ss_pred EEeCCCCC
Q 040144 155 RLDLSLNT 162 (289)
Q Consensus 155 ~L~l~~n~ 162 (289)
.|++.+|+
T Consensus 117 ~L~L~~NP 124 (175)
T PF14580_consen 117 VLSLEGNP 124 (175)
T ss_dssp EEE-TT-G
T ss_pred eeeccCCc
Confidence 55555555
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.16 E-value=8.2e-11 Score=100.77 Aligned_cols=194 Identities=28% Similarity=0.390 Sum_probs=114.1
Q ss_pred EeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCC-CCcEEeccCCCCCCcchhhHhhcCCCCCEEEcc
Q 040144 56 LDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFS-SLTMLDLSHNQFDNSFILSWVFALSHLPFLDLG 134 (289)
Q Consensus 56 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 134 (289)
++...+.+..... .+.....++.+.+.++.++.+.+ ...... +|+.|++++|.+. .++..++.+++|+.|+++
T Consensus 98 l~~~~~~~~~~~~---~~~~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~--~l~~~~~~l~~L~~L~l~ 171 (394)
T COG4886 98 LDLNLNRLRSNIS---ELLELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLS 171 (394)
T ss_pred eeccccccccCch---hhhcccceeEEecCCcccccCcc-ccccchhhcccccccccchh--hhhhhhhccccccccccC
Confidence 4555554423221 33344566677777776666533 223332 6777777777664 333445666777777777
Q ss_pred CceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEcc
Q 040144 135 FNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLV 213 (289)
Q Consensus 135 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~ 213 (289)
.|++. .+ +...+..+.|+.+++++|. +. .+|.... ...|+++.+ ++|... ..+..+..+.++..+.+.
T Consensus 172 ~N~l~-~l-~~~~~~~~~L~~L~ls~N~-i~-~l~~~~~~~~~L~~l~~------~~N~~~-~~~~~~~~~~~l~~l~l~ 240 (394)
T COG4886 172 FNDLS-DL-PKLLSNLSNLNNLDLSGNK-IS-DLPPEIELLSALEELDL------SNNSII-ELLSSLSNLKNLSGLELS 240 (394)
T ss_pred Cchhh-hh-hhhhhhhhhhhheeccCCc-cc-cCchhhhhhhhhhhhhh------cCCcce-ecchhhhhcccccccccC
Confidence 77666 44 3334456667777777766 33 4444433 444555554 444322 233345555566666555
Q ss_pred CCeeeecCCCceEEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCccccccccEEecccccCccCC
Q 040144 214 NNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIGSRF 287 (289)
Q Consensus 214 ~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 287 (289)
+|++. .++. .++++++++.|++++|.++.. +. ++...+++.+++++|.+....
T Consensus 241 ~n~~~------------------~~~~-~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 241 NNKLE------------------DLPE-SIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred Cceee------------------eccc-hhccccccceecccccccccc-cc-ccccCccCEEeccCccccccc
Confidence 55544 3344 677788888888888888864 22 788888888888888776443
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.15 E-value=1.8e-12 Score=109.38 Aligned_cols=191 Identities=25% Similarity=0.338 Sum_probs=95.6
Q ss_pred cccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEE
Q 040144 52 LLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFL 131 (289)
Q Consensus 52 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 131 (289)
.-...+++.|.+...+. .+..+..|..+.+.+|.+..+ +..++++..|+.++++.|++. ..|..++.++ |+.|
T Consensus 76 dt~~aDlsrNR~~elp~---~~~~f~~Le~liLy~n~~r~i-p~~i~~L~~lt~l~ls~NqlS--~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPE---EACAFVSLESLILYHNCIRTI-PEAICNLEALTFLDLSSNQLS--HLPDGLCDLP-LKVL 148 (722)
T ss_pred chhhhhccccccccCch---HHHHHHHHHHHHHHhccceec-chhhhhhhHHHHhhhccchhh--cCChhhhcCc-ceeE
Confidence 33444455554444433 333334444444444444332 334444555555555555542 3344443333 4455
Q ss_pred EccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEE
Q 040144 132 DLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTF 210 (289)
Q Consensus 132 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L 210 (289)
.+++|+++ .+ |..++....|..++.+.|. +. .+|..+. +.+|+.|.+ ..|.+. .+|..+..++ |.
T Consensus 149 i~sNNkl~-~l-p~~ig~~~tl~~ld~s~ne-i~-slpsql~~l~slr~l~v------rRn~l~-~lp~El~~Lp-Li-- 214 (722)
T KOG0532|consen 149 IVSNNKLT-SL-PEEIGLLPTLAHLDVSKNE-IQ-SLPSQLGYLTSLRDLNV------RRNHLE-DLPEELCSLP-LI-- 214 (722)
T ss_pred EEecCccc-cC-CcccccchhHHHhhhhhhh-hh-hchHHhhhHHHHHHHHH------hhhhhh-hCCHHHhCCc-ee--
Confidence 55555544 33 4444444455555555554 22 3333333 333433332 333333 2222233222 44
Q ss_pred EccCCeeeecCCCceEEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCcc---ccccccEEecccc
Q 040144 211 NLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWI---PHFQLVALGLHSC 281 (289)
Q Consensus 211 ~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~---~~~~L~~l~l~~n 281 (289)
.||++.|+++ .+|. .|.+|++|++|-|.+|.+.. .|..++ +.-=.+.|++.-|
T Consensus 215 ---------------~lDfScNkis-~iPv-~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 215 ---------------RLDFSCNKIS-YLPV-DFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ---------------eeecccCcee-ecch-hhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhc
Confidence 4555555555 7888 89999999999999999985 555443 3333556666666
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=1.1e-10 Score=86.82 Aligned_cols=133 Identities=26% Similarity=0.191 Sum_probs=53.3
Q ss_pred cCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCC
Q 040144 22 LGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFS 101 (289)
Q Consensus 22 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 101 (289)
+.+...+++|++.+|.+..+.... ..+.+|+.|++++|.+.... .+..++.|++|++++|.++.+.......++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~--~~l~~L~~L~Ls~N~I~~l~----~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp 88 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLG--ATLDKLEVLDLSNNQITKLE----GLPGLPRLKTLDLSNNRISSISEGLDKNLP 88 (175)
T ss_dssp ---------------------S----TT-TT--EEE-TTS--S--T----T----TT--EEE--SS---S-CHHHHHH-T
T ss_pred cccccccccccccccccccccchh--hhhcCCCEEECCCCCCcccc----CccChhhhhhcccCCCCCCccccchHHhCC
Confidence 445557899999998887775421 25788999999999888754 566788999999999999876432224588
Q ss_pred CCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeee--ChhhhcCCCCccEEeCCC
Q 040144 102 SLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTI--DLEALGNLTSINRLDLSL 160 (289)
Q Consensus 102 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~L~~L~l~~ 160 (289)
+|+.|++++|.+.+-.....++.+++|+.|++.+|.+...- ....+..+|+|+.||-..
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 99999999998874444456778899999999999886321 123566788888888654
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.12 E-value=1.2e-11 Score=98.57 Aligned_cols=189 Identities=22% Similarity=0.143 Sum_probs=113.1
Q ss_pred cCCCCCCcEEeCCCccccccCCCc---ccCCCCcccEEeccCccccccc--hh---------hHhhhcCCCccEEEccCC
Q 040144 22 LGNLSNLQFLDLSSKYLLYVDNFL---WLSGISLLEHLDLRYVNLSIAF--DW---------LMVANKLLSLVELRLSNC 87 (289)
Q Consensus 22 l~~l~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~--~~---------~~~~~~~~~L~~L~l~~~ 87 (289)
+..+|+|+++++++|-+.+-.... .+.++..|++|.+.+|.+.... .+ ..-...-+.|+++...+|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 455667777777777655443221 2455677777777777654431 10 011123456777777777
Q ss_pred ccCCCCcc----cccCCCCCcEEeccCCCCCCcch---hhHhhcCCCCCEEEccCceeeee----eChhhhcCCCCccEE
Q 040144 88 QLQHFSPL----ATVNFSSLTMLDLSHNQFDNSFI---LSWVFALSHLPFLDLGFNNFQGT----IDLEALGNLTSINRL 156 (289)
Q Consensus 88 ~l~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L 156 (289)
.+...... .+...+.|+.+.+..|.|....+ ...+..+++|+.|++.+|.++.. + ..+++.+++|+.+
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L-akaL~s~~~L~El 246 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL-AKALSSWPHLREL 246 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH-HHHhcccchheee
Confidence 76654332 33455677777777776652222 23455677777778777766421 2 4556667777888
Q ss_pred eCCCCCcccCCCCc----ccc--ccCcceeeccccccccCCccccc----ccccccCCCCCcEEEccCCeee
Q 040144 157 DLSLNTGLTGRIPR----SMA--LCNLKSINLQESLDMRSSSIYGH----LTDQLGQFRNLVTFNLVNNSIV 218 (289)
Q Consensus 157 ~l~~n~~~~~~~~~----~~~--~~~L~~L~l~~~l~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~ 218 (289)
++++|. +...... .+. .|.|+.+.+ .+|.++.. +...++..+.|+.|++++|.+.
T Consensus 247 ~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l------~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 247 NLGDCL-LENEGAIAFVDALKESAPSLEVLEL------AGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccccc-cccccHHHHHHHHhccCCCCceecc------CcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 887776 5443222 222 566666665 77777633 2333456788999999999884
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.09 E-value=2.7e-12 Score=108.40 Aligned_cols=174 Identities=26% Similarity=0.343 Sum_probs=129.3
Q ss_pred CCCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccE
Q 040144 76 LLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINR 155 (289)
Q Consensus 76 ~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 155 (289)
+..-...+++.|.+..+ |..+..+..|+.+.+..|.+. .++..++++..|++++++.|.++ .. |..++.++ |+.
T Consensus 74 ltdt~~aDlsrNR~~el-p~~~~~f~~Le~liLy~n~~r--~ip~~i~~L~~lt~l~ls~NqlS-~l-p~~lC~lp-Lkv 147 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSEL-PEEACAFVSLESLILYHNCIR--TIPEAICNLEALTFLDLSSNQLS-HL-PDGLCDLP-LKV 147 (722)
T ss_pred ccchhhhhccccccccC-chHHHHHHHHHHHHHHhccce--ecchhhhhhhHHHHhhhccchhh-cC-ChhhhcCc-cee
Confidence 33444567777776654 445566667777777777773 56777778888888888888876 55 66677776 788
Q ss_pred EeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCceEEEeeccee
Q 040144 156 LDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKL 234 (289)
Q Consensus 156 L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~ 234 (289)
+-+++|. +. .+|..++ .+.|..|+. +.|++. .+|..++++.+|+.|+++.|.+.
T Consensus 148 li~sNNk-l~-~lp~~ig~~~tl~~ld~------s~nei~-slpsql~~l~slr~l~vrRn~l~---------------- 202 (722)
T KOG0532|consen 148 LIVSNNK-LT-SLPEEIGLLPTLAHLDV------SKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE---------------- 202 (722)
T ss_pred EEEecCc-cc-cCCcccccchhHHHhhh------hhhhhh-hchHHhhhHHHHHHHHHhhhhhh----------------
Confidence 8888777 43 6677777 666665554 777776 45566777888888888777776
Q ss_pred eeeeccccccccccccEEEecCCeeeeccCCCccccccccEEecccccCcc
Q 040144 235 NVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIGS 285 (289)
Q Consensus 235 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 285 (289)
.+|. .++ .-.|..||+++|++.. +|-+|.+++.|++|.+.+|.+.+
T Consensus 203 --~lp~-El~-~LpLi~lDfScNkis~-iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 203 --DLPE-ELC-SLPLIRLDFSCNKISY-LPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred --hCCH-HHh-CCceeeeecccCceee-cchhhhhhhhheeeeeccCCCCC
Confidence 5666 565 5678999999999995 89999999999999999999863
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.04 E-value=5e-11 Score=93.56 Aligned_cols=42 Identities=14% Similarity=0.024 Sum_probs=29.6
Q ss_pred ccccccccEEEecCCeeeec-cCCCccccccccEEecccccCc
Q 040144 243 FANLIEMSWFRVGGNQLTLE-VKHDWIPHFQLVALGLHSCYIG 284 (289)
Q Consensus 243 ~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~~L~~l~l~~n~~~ 284 (289)
+..+-+|..|++++|+|... -..+++++|-|+.+.+.+|.+.
T Consensus 370 L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 370 LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 55667778888888877642 2246778888888888888775
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.00 E-value=8.4e-10 Score=67.70 Aligned_cols=61 Identities=23% Similarity=0.244 Sum_probs=51.5
Q ss_pred CCCcEEEccCCeeeecCCCceEEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCccccccccEEecccccC
Q 040144 205 RNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYI 283 (289)
Q Consensus 205 ~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~ 283 (289)
++|+.|++++|.++ .++..+|.++++|++|++++|++....+..|..+++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~------------------~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT------------------EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES------------------EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC------------------ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 35666666666555 67766899999999999999999988888999999999999999975
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.00 E-value=8.6e-10 Score=94.50 Aligned_cols=182 Identities=31% Similarity=0.391 Sum_probs=116.8
Q ss_pred cCCCCCCcEEeCCCccccccCCCcccCCCC-cccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCC
Q 040144 22 LGNLSNLQFLDLSSKYLLYVDNFLWLSGIS-LLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNF 100 (289)
Q Consensus 22 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 100 (289)
+..++.++.|++.++.+...... ..... +|+.|+++++.+...+. .+..++.|+.|++.+|.+....+ ..+..
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~--~~~~~~nL~~L~l~~N~i~~l~~---~~~~l~~L~~L~l~~N~l~~l~~-~~~~~ 185 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPL--IGLLKSNLKELDLSDNKIESLPS---PLRNLPNLKNLDLSFNDLSDLPK-LLSNL 185 (394)
T ss_pred hhcccceeEEecCCcccccCccc--cccchhhcccccccccchhhhhh---hhhccccccccccCCchhhhhhh-hhhhh
Confidence 44456677777777776666543 23342 77777777777766543 56677778888888777776533 22356
Q ss_pred CCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcce
Q 040144 101 SSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKS 179 (289)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~ 179 (289)
+.|+.|++++|.+. .++........|+++.+++|... .. +..+.+++++..+.+.+|. +. ..+..+. +++++.
T Consensus 186 ~~L~~L~ls~N~i~--~l~~~~~~~~~L~~l~~~~N~~~-~~-~~~~~~~~~l~~l~l~~n~-~~-~~~~~~~~l~~l~~ 259 (394)
T COG4886 186 SNLNNLDLSGNKIS--DLPPEIELLSALEELDLSNNSII-EL-LSSLSNLKNLSGLELSNNK-LE-DLPESIGNLSNLET 259 (394)
T ss_pred hhhhheeccCCccc--cCchhhhhhhhhhhhhhcCCcce-ec-chhhhhcccccccccCCce-ee-eccchhccccccce
Confidence 77777788777774 44544444555777777777543 23 4556677777777777766 33 2345555 666776
Q ss_pred eeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCC
Q 040144 180 INLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPW 223 (289)
Q Consensus 180 L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 223 (289)
|++ ++|.++.... ++...+++.+++++|.+....+.
T Consensus 260 L~~------s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 260 LDL------SNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ecc------cccccccccc--ccccCccCEEeccCccccccchh
Confidence 665 6777764433 67777888888888777654433
No 35
>PLN03150 hypothetical protein; Provisional
Probab=98.90 E-value=2.9e-09 Score=95.86 Aligned_cols=98 Identities=22% Similarity=0.318 Sum_probs=74.4
Q ss_pred ccccCCcccccccccccCCCCCcEEEccCCeeeecCCCce-------EEEeecceeeeeeccccccccccccEEEecCCe
Q 040144 186 LDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF-------ELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQ 258 (289)
Q Consensus 186 l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~-------~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~ 258 (289)
+++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+ .|++++|.+++.+|. .++++++|+.|++++|.
T Consensus 423 L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~-~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLTSLRILNLNGNS 501 (623)
T ss_pred EECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch-HHhcCCCCCEEECcCCc
Confidence 3457788887888888888888888888888877766544 677788888777887 78888888888888888
Q ss_pred eeeccCCCcccc-ccccEEecccccCc
Q 040144 259 LTLEVKHDWIPH-FQLVALGLHSCYIG 284 (289)
Q Consensus 259 ~~~~~~~~~~~~-~~L~~l~l~~n~~~ 284 (289)
+.+.+|..+... .++..+++.+|...
T Consensus 502 l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 502 LSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred ccccCChHHhhccccCceEEecCCccc
Confidence 888888776643 35667777777543
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=5.6e-09 Score=64.02 Aligned_cols=61 Identities=36% Similarity=0.460 Sum_probs=47.7
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccc
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNL 63 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 63 (289)
|+|++|++++|.++...+.+|..+++|++|++++|.+..++... +.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~-f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDA-FSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTT-TTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHH-HcCCCCCCEEeCcCCcC
Confidence 57888888888888766677888888888888888777666544 67888888888887753
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.81 E-value=4.5e-10 Score=88.30 Aligned_cols=134 Identities=25% Similarity=0.266 Sum_probs=92.9
Q ss_pred ccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCC
Q 040144 21 QLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNF 100 (289)
Q Consensus 21 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 100 (289)
.+..++.|+++|++.|.+..++.. ..-.++++.|++++|.+.... .+..+++|+.|++++|.++...... ..+
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iDES--vKL~Pkir~L~lS~N~i~~v~----nLa~L~~L~~LDLS~N~Ls~~~Gwh-~KL 351 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQIDES--VKLAPKLRRLILSQNRIRTVQ----NLAELPQLQLLDLSGNLLAECVGWH-LKL 351 (490)
T ss_pred ecchHhhhhhccccccchhhhhhh--hhhccceeEEeccccceeeeh----hhhhcccceEeecccchhHhhhhhH-hhh
Confidence 344566788888888877666543 344778888888888776643 4667788888888888776542211 245
Q ss_pred CCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCccc
Q 040144 101 SSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLT 165 (289)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 165 (289)
-+++.|.+..|.+. ...++..+-+|..|++.+|++..-..-..++++|.|+.+.+.+|+ +.
T Consensus 352 GNIKtL~La~N~iE---~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~ 412 (490)
T KOG1259|consen 352 GNIKTLKLAQNKIE---TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP-LA 412 (490)
T ss_pred cCEeeeehhhhhHh---hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC-cc
Confidence 67778888888764 445566677788888888887632113467788888888888887 44
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.79 E-value=1.9e-08 Score=90.62 Aligned_cols=90 Identities=29% Similarity=0.512 Sum_probs=60.6
Q ss_pred CCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCC
Q 040144 128 LPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRN 206 (289)
Q Consensus 128 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~ 206 (289)
++.|++++|.+.+.+ +..++.+++|+.|++++|. +.+.+|..+. +++|+.|++ ++|.+.+.+|..++.+++
T Consensus 420 v~~L~L~~n~L~g~i-p~~i~~L~~L~~L~Ls~N~-l~g~iP~~~~~l~~L~~LdL------s~N~lsg~iP~~l~~L~~ 491 (623)
T PLN03150 420 IDGLGLDNQGLRGFI-PNDISKLRHLQSINLSGNS-IRGNIPPSLGSITSLEVLDL------SYNSFNGSIPESLGQLTS 491 (623)
T ss_pred EEEEECCCCCccccC-CHHHhCCCCCCEEECCCCc-ccCcCChHHhCCCCCCEEEC------CCCCCCCCCchHHhcCCC
Confidence 566667777666655 5566677777777777776 6666666666 666666665 667777667766777777
Q ss_pred CcEEEccCCeeeecCCCce
Q 040144 207 LVTFNLVNNSIVGFIPWSF 225 (289)
Q Consensus 207 L~~L~l~~n~~~~~~~~~~ 225 (289)
|+.|++++|.+++.+|..+
T Consensus 492 L~~L~Ls~N~l~g~iP~~l 510 (623)
T PLN03150 492 LRILNLNGNSLSGRVPAAL 510 (623)
T ss_pred CCEEECcCCcccccCChHH
Confidence 7777777777766666543
No 39
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=1.6e-09 Score=85.11 Aligned_cols=117 Identities=19% Similarity=0.148 Sum_probs=84.6
Q ss_pred CCCCCCcEEeCCCccccccCCCccc-CCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCC
Q 040144 23 GNLSNLQFLDLSSKYLLYVDNFLWL-SGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFS 101 (289)
Q Consensus 23 ~~l~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 101 (289)
+....++-+.+.++.+-..+....+ ..+..++.+|+.+|.+.+...+...+.++|+|++|+++.|.+.......=....
T Consensus 42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~ 121 (418)
T KOG2982|consen 42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLK 121 (418)
T ss_pred ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccccc
Confidence 3334455666666655544433223 457889999999999999877777889999999999999988764321113456
Q ss_pred CCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceee
Q 040144 102 SLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQ 139 (289)
Q Consensus 102 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 139 (289)
+|++|.+.+..+.+......+..++.+++|+++.|.+.
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence 88999998887765566666778899999999998543
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.70 E-value=2.4e-09 Score=92.09 Aligned_cols=107 Identities=32% Similarity=0.333 Sum_probs=46.7
Q ss_pred cCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCC
Q 040144 22 LGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFS 101 (289)
Q Consensus 22 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 101 (289)
+..+++|+.+++.+|.+..+... +..+++|++|++++|.+.... .+..++.|+.|++.+|.+..+ ..+..++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~--l~~~~~L~~L~ls~N~I~~i~----~l~~l~~L~~L~l~~N~i~~~--~~~~~l~ 162 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENL--LSSLVNLQVLDLSFNKITKLE----GLSTLTLLKELNLSGNLISDI--SGLESLK 162 (414)
T ss_pred cccccceeeeeccccchhhcccc--hhhhhcchheecccccccccc----chhhccchhhheeccCcchhc--cCCccch
Confidence 34444555555555444433321 233455555555555544432 233334455555555554433 1222344
Q ss_pred CCcEEeccCCCCCCcchhhH-hhcCCCCCEEEccCcee
Q 040144 102 SLTMLDLSHNQFDNSFILSW-VFALSHLPFLDLGFNNF 138 (289)
Q Consensus 102 ~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~ 138 (289)
.++.+++++|.+. .+... ...+.+++.+++.+|.+
T Consensus 163 ~L~~l~l~~n~i~--~ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 163 SLKLLDLSYNRIV--DIENDELSELISLEELDLGGNSI 198 (414)
T ss_pred hhhcccCCcchhh--hhhhhhhhhccchHHHhccCCch
Confidence 4555555555443 11110 23344455555555444
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.62 E-value=5.9e-08 Score=89.80 Aligned_cols=240 Identities=18% Similarity=0.154 Sum_probs=130.8
Q ss_pred CCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCcc--ccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCC
Q 040144 24 NLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVN--LSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFS 101 (289)
Q Consensus 24 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 101 (289)
+....+...+.++.+...... ..++.|++|-+.++. +..... ..+..++.|++|++++|.-....|..++.+-
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~---~~~~~L~tLll~~n~~~l~~is~--~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li 595 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGS---SENPKLRTLLLQRNSDWLLEISG--EFFRSLPLLRVLDLSGNSSLSKLPSSIGELV 595 (889)
T ss_pred chhheeEEEEeccchhhccCC---CCCCccceEEEeecchhhhhcCH--HHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence 344556666666554444322 235567777777664 333221 2467778888888887765556677777778
Q ss_pred CCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccC--CCCcccc-ccCcc
Q 040144 102 SLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTG--RIPRSMA-LCNLK 178 (289)
Q Consensus 102 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~-~~~L~ 178 (289)
+|++|+++++.+. .+|..++++.+|.+|++..+.....+ +.....+++|++|.+.... ... ..-..+. +..|+
T Consensus 596 ~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~ 671 (889)
T KOG4658|consen 596 HLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLE 671 (889)
T ss_pred hhhcccccCCCcc--ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccc-cccchhhHHhhhcccchh
Confidence 8888888877774 67777777788888887776654334 5555567777777775543 110 0001111 22333
Q ss_pred eeeccc--------------------cccccCCcccccccccccCCCCCcEEEccCCeeeecCCCce-------------
Q 040144 179 SINLQE--------------------SLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF------------- 225 (289)
Q Consensus 179 ~L~l~~--------------------~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~------------- 225 (289)
.+.... .+.+.++... ..+..+..+++|+.|.+.++.+........
T Consensus 672 ~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~ 750 (889)
T KOG4658|consen 672 NLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLS 750 (889)
T ss_pred hheeecchhHhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHH
Confidence 332211 1111112222 234456778889999999887753211110
Q ss_pred EEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCccccccccE
Q 040144 226 ELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVA 275 (289)
Q Consensus 226 ~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~ 275 (289)
.+...++... ..+. +.--.++|+.+.+..++....+......+..+..
T Consensus 751 ~~~~~~~~~~-r~l~-~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~ 798 (889)
T KOG4658|consen 751 KVSILNCHML-RDLT-WLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE 798 (889)
T ss_pred HHHhhccccc-cccc-hhhccCcccEEEEecccccccCCCHHHHhhhccc
Confidence 1111122111 1111 2334578888888877665544444444444443
No 42
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.60 E-value=5.7e-10 Score=91.21 Aligned_cols=258 Identities=18% Similarity=0.127 Sum_probs=128.0
Q ss_pred CcEEEccCCc-cccc-CCCccCCCCCCcEEeCCCccccccCCCccc-CCCCcccEEeccCccccccchhhHhhhcCCCcc
Q 040144 4 LRYLNFSKTR-ICGI-IPQQLGNLSNLQFLDLSSKYLLYVDNFLWL-SGISLLEHLDLRYVNLSIAFDWLMVANKLLSLV 80 (289)
Q Consensus 4 L~~L~l~~~~-~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 80 (289)
|+.|.+.++. +... +...-.++|+++.|.+.+|...+......+ ..+.+|+++++..|..-....+......+++|+
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 4566666654 1111 112224566777777766654333221112 345666666665543222111111223555666
Q ss_pred EEEccCCccC-C-----------------------CCcccc----cCCCCCcEEeccCC-CCCCcchhhHhhcCCCCCEE
Q 040144 81 ELRLSNCQLQ-H-----------------------FSPLAT----VNFSSLTMLDLSHN-QFDNSFILSWVFALSHLPFL 131 (289)
Q Consensus 81 ~L~l~~~~l~-~-----------------------~~~~~l----~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L 131 (289)
++.++.|.-. . ...+.+ +.++.+..+++..| .++|......-..+..|+.+
T Consensus 220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l 299 (483)
T KOG4341|consen 220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVL 299 (483)
T ss_pred HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhh
Confidence 6666655311 1 000111 11223444444343 34433333333456678888
Q ss_pred EccCceeeeeeChhhhc-CCCCccEEeCCCCCcccCCCCcccc--ccCcceeeccccccccCCccc--ccccccccCCCC
Q 040144 132 DLGFNNFQGTIDLEALG-NLTSINRLDLSLNTGLTGRIPRSMA--LCNLKSINLQESLDMRSSSIY--GHLTDQLGQFRN 206 (289)
Q Consensus 132 ~l~~n~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~--~~~L~~L~l~~~l~l~~~~~~--~~~~~~l~~~~~ 206 (289)
..+++.-.+..+..+++ +..+|+.+.+..+..+++.-...++ ++.|+.+++ .++... +.+...-.+|+.
T Consensus 300 ~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~------e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 300 CYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDL------EECGLITDGTLASLSRNCPR 373 (483)
T ss_pred cccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcc------cccceehhhhHhhhccCCch
Confidence 87777543222133333 5678888888888755544444444 777887775 444443 223333357888
Q ss_pred CcEEEccCCeee-ecCCCceEEEeecceeeeeeccccccccccccEEEecCCee-eeccCCCccccccccEEecccc
Q 040144 207 LVTFNLVNNSIV-GFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQL-TLEVKHDWIPHFQLVALGLHSC 281 (289)
Q Consensus 207 L~~L~l~~n~~~-~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~-~~~~~~~~~~~~~L~~l~l~~n 281 (289)
|+++.++.|... +..-. .+.. .-..+..|..+.+++++. ++..-+.+..++.|+.+++.+|
T Consensus 374 lr~lslshce~itD~gi~-------------~l~~-~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIR-------------HLSS-SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred hccCChhhhhhhhhhhhh-------------hhhh-ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 999999887543 22000 1111 223455666666666643 3333345556666666666665
No 43
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.57 E-value=1.4e-08 Score=78.86 Aligned_cols=243 Identities=19% Similarity=0.128 Sum_probs=142.1
Q ss_pred CCCCcEEEccCCcccccCC----CccCCCCCCcEEeCCCccccccCC---------CcccCCCCcccEEeccCcccccc-
Q 040144 1 MGNLRYLNFSKTRICGIIP----QQLGNLSNLQFLDLSSKYLLYVDN---------FLWLSGISLLEHLDLRYVNLSIA- 66 (289)
Q Consensus 1 ~~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~---------~~~~~~l~~L~~L~l~~~~~~~~- 66 (289)
|..+++++|++|.|..... ..+.+-.+|+..+++.-....... ...+.+|++|+..++++|.+...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 3457788999998864333 344556788888877643111100 01256789999999999987554
Q ss_pred -chhhHhhhcCCCccEEEccCCccCCCCcccc-------------cCCCCCcEEeccCCCCCCcchhh---HhhcCCCCC
Q 040144 67 -FDWLMVANKLLSLVELRLSNCQLQHFSPLAT-------------VNFSSLTMLDLSHNQFDNSFILS---WVFALSHLP 129 (289)
Q Consensus 67 -~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l-------------~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~ 129 (289)
+...+.+.+...|.+|.+++|++.......+ .+-|.|++.....|++.++.... .+..-..|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 3334466778889999999998775433222 23577888888888876332221 222335788
Q ss_pred EEEccCceeeeee-C---hhhhcCCCCccEEeCCCCCcccCCCCcc----cc-ccCcceeeccccccccCCccccccccc
Q 040144 130 FLDLGFNNFQGTI-D---LEALGNLTSINRLDLSLNTGLTGRIPRS----MA-LCNLKSINLQESLDMRSSSIYGHLTDQ 200 (289)
Q Consensus 130 ~L~l~~n~~~~~~-~---~~~~~~~~~L~~L~l~~n~~~~~~~~~~----~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~ 200 (289)
.+.+..|.+...- . ...+..+.+|+.|++..|. ++...... .. ++.|+.|.+ .+|-+......+
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W~~lrEL~l------nDClls~~G~~~ 261 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEWNLLRELRL------NDCLLSNEGVKS 261 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhcccchhhhccc------cchhhccccHHH
Confidence 8888888775220 0 1122345778888888887 65333222 22 455666665 556554332222
Q ss_pred ----c--cCCCCCcEEEccCCeeeecCCCceEEEeecceeeeeeccccccccccccEEEecCCeeee
Q 040144 201 ----L--GQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTL 261 (289)
Q Consensus 201 ----l--~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 261 (289)
+ ...|+|..|....|...+..- +++ .++...-.+++-|..|.+.+|++..
T Consensus 262 v~~~f~e~~~p~l~~L~~~Yne~~~~~i----~~~-------~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 262 VLRRFNEKFVPNLMPLPGDYNERRGGII----LDI-------SLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred HHHHhhhhcCCCccccccchhhhcCcee----eee-------chhhhhhcccHHHHHHHHccCcchh
Confidence 1 124667777777666553311 111 1222122356777778888888764
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.4e-09 Score=85.41 Aligned_cols=153 Identities=25% Similarity=0.189 Sum_probs=62.4
Q ss_pred CCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCc-cCCCCc-ccccCCCCCc
Q 040144 27 NLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQ-LQHFSP-LATVNFSSLT 104 (289)
Q Consensus 27 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~-~~l~~~~~L~ 104 (289)
.||++|+++..+........+..|.+|+.|.+.++.+.+. +...+.....|..++++.|. ++.... ..+.++..|+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~--I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDP--IVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcH--HHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 3555555554333222211134455555555555554443 12234444555555555442 222111 1234455555
Q ss_pred EEeccCCCCCCcchhhHhhcC-CCCCEEEccCcee--e-eeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcce
Q 040144 105 MLDLSHNQFDNSFILSWVFAL-SHLPFLDLGFNNF--Q-GTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKS 179 (289)
Q Consensus 105 ~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~~--~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~ 179 (289)
.|+++.|..........+.+. ++++.|+++++.- . ..+ ..-...++++..||++++..+.......+. ++.|++
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~-~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHL-STLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHH-HHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 555555544311111111111 3455555555421 0 011 122234555555555554322222222233 555555
Q ss_pred eec
Q 040144 180 INL 182 (289)
Q Consensus 180 L~l 182 (289)
+++
T Consensus 343 lSl 345 (419)
T KOG2120|consen 343 LSL 345 (419)
T ss_pred eeh
Confidence 554
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.54 E-value=5.5e-09 Score=89.90 Aligned_cols=235 Identities=25% Similarity=0.265 Sum_probs=131.8
Q ss_pred CCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCc
Q 040144 25 LSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLT 104 (289)
Q Consensus 25 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~ 104 (289)
+..++.+++..+.+...... +..++.|+.+++.++.+..... .+..+++|++|++++|.++.+ ..+..++.|+
T Consensus 71 l~~l~~l~l~~n~i~~~~~~--l~~~~~l~~l~l~~n~i~~i~~---~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~ 143 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNH--LSKLKSLEALDLYDNKIEKIEN---LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLK 143 (414)
T ss_pred hHhHHhhccchhhhhhhhcc--cccccceeeeeccccchhhccc---chhhhhcchheeccccccccc--cchhhccchh
Confidence 34455555555544442211 4567778888888887776543 256777888888888877765 3345566678
Q ss_pred EEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeCh-hhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeec
Q 040144 105 MLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDL-EALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINL 182 (289)
Q Consensus 105 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l 182 (289)
.|++.+|.+. ....+..+..|+.+++++|.+. .+.. . ...+.+++.+.++.|. +.. ...+. +..+..++
T Consensus 144 ~L~l~~N~i~---~~~~~~~l~~L~~l~l~~n~i~-~ie~~~-~~~~~~l~~l~l~~n~-i~~--i~~~~~~~~l~~~~- 214 (414)
T KOG0531|consen 144 ELNLSGNLIS---DISGLESLKSLKLLDLSYNRIV-DIENDE-LSELISLEELDLGGNS-IRE--IEGLDLLKKLVLLS- 214 (414)
T ss_pred hheeccCcch---hccCCccchhhhcccCCcchhh-hhhhhh-hhhccchHHHhccCCc-hhc--ccchHHHHHHHHhh-
Confidence 8888888775 2223444677788888888776 3312 1 3567777777777776 321 11222 22222222
Q ss_pred cccccccCCcccccccccccCCC--CCcEEEccCCeeeec---CCCce---EEEeecceeeeeeccccccccccccEEEe
Q 040144 183 QESLDMRSSSIYGHLTDQLGQFR--NLVTFNLVNNSIVGF---IPWSF---ELHIYDNKLNVTLFELHFANLIEMSWFRV 254 (289)
Q Consensus 183 ~~~l~l~~~~~~~~~~~~l~~~~--~L~~L~l~~n~~~~~---~~~~~---~L~l~~n~~~~~~~~~~~~~~~~L~~l~l 254 (289)
+..|.++..-+ +..+. .|+.+.+++|.+... ++... .+++.+|.+.. .. .+.....+..+..
T Consensus 215 -----l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~-~~--~~~~~~~~~~~~~ 284 (414)
T KOG0531|consen 215 -----LLDNKISKLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISN-LE--GLERLPKLSELWL 284 (414)
T ss_pred -----cccccceeccC--cccchhHHHHHHhcccCccccccccccccccccccchhhccccc-cc--cccccchHHHhcc
Confidence 24444442211 11122 277777777777632 11111 56666666542 11 2344566666667
Q ss_pred cCCeeeec---cCCC-ccccccccEEecccccCcc
Q 040144 255 GGNQLTLE---VKHD-WIPHFQLVALGLHSCYIGS 285 (289)
Q Consensus 255 ~~n~~~~~---~~~~-~~~~~~L~~l~l~~n~~~~ 285 (289)
..+.+... .... ....+.++.+.+..|.+..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 285 NDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred CcchhcchhhhhccccccccccccccccccCcccc
Confidence 77765532 1111 3455677777777776654
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.53 E-value=8.6e-08 Score=88.74 Aligned_cols=104 Identities=24% Similarity=0.193 Sum_probs=48.7
Q ss_pred CCcEEEccCCc--ccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCcc
Q 040144 3 NLRYLNFSKTR--ICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLV 80 (289)
Q Consensus 3 ~L~~L~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 80 (289)
+|++|-+..+. +.......|..+|.|+.||+++|.....-+. .++.+.+|++|+++++.+...|. ++..+..|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~~Li~LryL~L~~t~I~~LP~---~l~~Lk~L~ 621 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIGELVHLRYLDLSDTGISHLPS---GLGNLKKLI 621 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HHhhhhhhhcccccCCCccccch---HHHHHHhhh
Confidence 34444444443 2222222244455666666655432211111 14555556666665555554444 555555555
Q ss_pred EEEccCCccCCCCcccccCCCCCcEEeccC
Q 040144 81 ELRLSNCQLQHFSPLATVNFSSLTMLDLSH 110 (289)
Q Consensus 81 ~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 110 (289)
+|++..+......+.....+.+|++|.+..
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeec
Confidence 555555443333333334455555555543
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.8e-08 Score=79.33 Aligned_cols=179 Identities=21% Similarity=0.112 Sum_probs=114.2
Q ss_pred CCcEEEccCCcccc-cCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 3 NLRYLNFSKTRICG-IIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 3 ~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
.|++++|+...++. .....+.+|.+|+.|.+.++...+..... +++-..|+.++++.+.--........+.++..|++
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-HhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 36778888877762 23344677888888888886644332222 67788899999988843222222235678889999
Q ss_pred EEccCCccCCCCcc-ccc-CCCCCcEEeccCCCCC--CcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEe
Q 040144 82 LRLSNCQLQHFSPL-ATV-NFSSLTMLDLSHNQFD--NSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLD 157 (289)
Q Consensus 82 L~l~~~~l~~~~~~-~l~-~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 157 (289)
|+++.|.+...... ... --+++..|+++++.-. ...+......++++.+||+++|.........+|.+++.|+++.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 99999876542111 111 2367888888876422 1223334467889999999998754322156778889999999
Q ss_pred CCCCCcccCCCCcccc-ccCcceeec
Q 040144 158 LSLNTGLTGRIPRSMA-LCNLKSINL 182 (289)
Q Consensus 158 l~~n~~~~~~~~~~~~-~~~L~~L~l 182 (289)
++.|-.+..+.--.+. .|.|.+|+.
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv 370 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDV 370 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEe
Confidence 9988622211112234 777888875
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.15 E-value=4.1e-08 Score=86.06 Aligned_cols=106 Identities=30% Similarity=0.302 Sum_probs=64.0
Q ss_pred CCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCC
Q 040144 49 GISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHL 128 (289)
Q Consensus 49 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 128 (289)
-++.+++|+|++|++.... .+..+++|++|++++|.+..+.......+. |+.|.+++|-++ ....+.++.+|
T Consensus 185 ll~ale~LnLshNk~~~v~----~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~---tL~gie~LksL 256 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD----NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALT---TLRGIENLKSL 256 (1096)
T ss_pred HHHHhhhhccchhhhhhhH----HHHhcccccccccccchhccccccchhhhh-heeeeecccHHH---hhhhHHhhhhh
Confidence 3556677777777666532 456677777777777766655333323333 677777776654 33455666777
Q ss_pred CEEEccCceeeeeeChhhhcCCCCccEEeCCCCC
Q 040144 129 PFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNT 162 (289)
Q Consensus 129 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 162 (289)
+.||+++|-+.+.-...-+..+..|..|.|.+|+
T Consensus 257 ~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 257 YGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 7777777766543222334455667777777776
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=5.1e-07 Score=71.31 Aligned_cols=84 Identities=21% Similarity=0.218 Sum_probs=37.5
Q ss_pred CCCCcEEeCCCccccccCCCc-ccCCCCcccEEeccCccccccchhhHhh-hcCCCccEEEccCCccCCCCc-ccccCCC
Q 040144 25 LSNLQFLDLSSKYLLYVDNFL-WLSGISLLEHLDLRYVNLSIAFDWLMVA-NKLLSLVELRLSNCQLQHFSP-LATVNFS 101 (289)
Q Consensus 25 l~~L~~L~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~-~~l~~~~ 101 (289)
++.++++++.+|.+..+.... .+.+++.|++|+++.|.+..... .+ ....+|+++.+.++.+..... ..+..+|
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~---~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK---SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc---cCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 345555555555544433211 13455555555555555444321 11 233455555555554443322 1223344
Q ss_pred CCcEEeccCC
Q 040144 102 SLTMLDLSHN 111 (289)
Q Consensus 102 ~L~~L~l~~~ 111 (289)
.++.|.++.|
T Consensus 147 ~vtelHmS~N 156 (418)
T KOG2982|consen 147 KVTELHMSDN 156 (418)
T ss_pred hhhhhhhccc
Confidence 4555544444
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.14 E-value=3.9e-06 Score=62.69 Aligned_cols=129 Identities=22% Similarity=0.187 Sum_probs=89.8
Q ss_pred CcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEEe
Q 040144 28 LQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLD 107 (289)
Q Consensus 28 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~ 107 (289)
-+++++.+-++...... -.-..+...+||++|.+.... .+.+++.|.+|.+.+|.++.+.+.--..+++++.|.
T Consensus 21 e~e~~LR~lkip~ienl--g~~~d~~d~iDLtdNdl~~l~----~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~ 94 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENL--GATLDQFDAIDLTDNDLRKLD----NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLI 94 (233)
T ss_pred ccccccccccccchhhc--cccccccceecccccchhhcc----cCCCccccceEEecCCcceeeccchhhhccccceEE
Confidence 45667766544333321 122556778899998877654 566888999999999999988765555678899999
Q ss_pred ccCCCCCCcchhhHhhcCCCCCEEEccCceeeeee--ChhhhcCCCCccEEeCCCCC
Q 040144 108 LSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTI--DLEALGNLTSINRLDLSLNT 162 (289)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~L~~L~l~~n~ 162 (289)
+.+|++..-....-+..+++|++|.+-+|.++..- ..-.++.+++|+.||+..-.
T Consensus 95 LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 95 LTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 99988752222334567889999999999876321 12356788899999987753
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.14 E-value=1.6e-06 Score=48.74 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=29.1
Q ss_pred ccccEEEecCCeeeeccCCCccccccccEEecccccCcc
Q 040144 247 IEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIGS 285 (289)
Q Consensus 247 ~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 285 (289)
++|++|++++|++++ +|..++++++|+.|++++|+|++
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCC
Confidence 468888888888885 55568888888888888888873
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.08 E-value=3.1e-06 Score=76.65 Aligned_cols=83 Identities=30% Similarity=0.309 Sum_probs=35.1
Q ss_pred CCCccEEEccCCccCCC-CcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCcc
Q 040144 76 LLSLVELRLSNCQLQHF-SPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSIN 154 (289)
Q Consensus 76 ~~~L~~L~l~~~~l~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 154 (289)
+|.|+.|.+.+-.+... +.....++|+|..||++++.++ ...+++++++|+.|.+.+=.+........+..+++|+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~---nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS---NLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc---CcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 45555555544333211 1112234455555555555543 1134444555555544433333111123344455555
Q ss_pred EEeCCCC
Q 040144 155 RLDLSLN 161 (289)
Q Consensus 155 ~L~l~~n 161 (289)
.||++..
T Consensus 224 vLDIS~~ 230 (699)
T KOG3665|consen 224 VLDISRD 230 (699)
T ss_pred eeecccc
Confidence 5555543
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.07 E-value=3.3e-08 Score=86.60 Aligned_cols=125 Identities=32% Similarity=0.299 Sum_probs=86.7
Q ss_pred EEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEcc
Q 040144 6 YLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLS 85 (289)
Q Consensus 6 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 85 (289)
..+.++|.++ ....++.=++.++.|+++.|++..+.. +..+++|++||+++|++...+.+ +...+. |+.|.++
T Consensus 168 ~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~~---Lr~l~~LkhLDlsyN~L~~vp~l--~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 168 TASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVDN---LRRLPKLKHLDLSYNCLRHVPQL--SMVGCK-LQLLNLR 240 (1096)
T ss_pred hhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhHH---HHhcccccccccccchhcccccc--chhhhh-heeeeec
Confidence 3445555544 233455567888999999888777762 67789999999999988877542 222333 8889999
Q ss_pred CCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceee
Q 040144 86 NCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQ 139 (289)
Q Consensus 86 ~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 139 (289)
+|.++.. ..+.++.+|+.||+++|-+.+......++.+..|..|++.+|.+-
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8887764 244577888888999887753333334556677888888888764
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.03 E-value=6.6e-07 Score=62.59 Aligned_cols=106 Identities=25% Similarity=0.332 Sum_probs=60.3
Q ss_pred ccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEE
Q 040144 53 LEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLD 132 (289)
Q Consensus 53 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 132 (289)
+..++|+.|++...++....+....+|+..++++|.+....+..-..++.++.+++.+|.+. .+|..+..++.|+.++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis--dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS--DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh--hchHHHhhhHHhhhcc
Confidence 44455556655443332224445556666666666666543322234456666666666663 4555566666677777
Q ss_pred ccCceeeeeeChhhhcCCCCccEEeCCCCC
Q 040144 133 LGFNNFQGTIDLEALGNLTSINRLDLSLNT 162 (289)
Q Consensus 133 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 162 (289)
+..|.+. .. +..+..+.++..|+...|.
T Consensus 107 l~~N~l~-~~-p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 107 LRFNPLN-AE-PRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred cccCccc-cc-hHHHHHHHhHHHhcCCCCc
Confidence 7666665 34 5555556666666665555
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.02 E-value=3.8e-06 Score=65.69 Aligned_cols=16 Identities=25% Similarity=0.173 Sum_probs=10.2
Q ss_pred CCCCCcEEEccCCeee
Q 040144 203 QFRNLVTFNLVNNSIV 218 (289)
Q Consensus 203 ~~~~L~~L~l~~n~~~ 218 (289)
++|-|..|.+.+|.+.
T Consensus 301 ~~p~L~~le~ngNr~~ 316 (388)
T COG5238 301 AVPLLVDLERNGNRIK 316 (388)
T ss_pred ccHHHHHHHHccCcch
Confidence 4556666677777664
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=5.8e-06 Score=46.50 Aligned_cols=40 Identities=35% Similarity=0.546 Sum_probs=28.8
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccC
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVD 42 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 42 (289)
++|++|++++|++++ +|+.+++|++|++|++++|.+..++
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCCCc
Confidence 478888888888874 5666888888888888887765443
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.98 E-value=1.5e-06 Score=78.62 Aligned_cols=134 Identities=21% Similarity=0.194 Sum_probs=77.3
Q ss_pred CCCcEEeCCCccccccCCCccc-CCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCc
Q 040144 26 SNLQFLDLSSKYLLYVDNFLWL-SGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLT 104 (289)
Q Consensus 26 ~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~ 104 (289)
.+|++|++++.......+...+ ..+|.|++|.+++-.+.... +.....++|+|..|++++++++.. ..++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence 4677777776544433332222 23677777777766554432 333556777777777777777665 4556677777
Q ss_pred EEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeee--eC---hhhhcCCCCccEEeCCCCC
Q 040144 105 MLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGT--ID---LEALGNLTSINRLDLSLNT 162 (289)
Q Consensus 105 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~---~~~~~~~~~L~~L~l~~n~ 162 (289)
.|.+.+=.+........+.++.+|+.||++....... +. .+.-..+|+|+.||.++..
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 7776655554223333455677777777776543311 00 1122346677777777665
No 58
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.91 E-value=7.4e-07 Score=73.45 Aligned_cols=142 Identities=16% Similarity=0.137 Sum_probs=81.2
Q ss_pred CCCCCcEEeccCC-CCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhh-cCCCCccEEeCCCCCcccCC-CCcccc-c
Q 040144 99 NFSSLTMLDLSHN-QFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEAL-GNLTSINRLDLSLNTGLTGR-IPRSMA-L 174 (289)
Q Consensus 99 ~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~-~~~~~~-~ 174 (289)
.+..++.++.+++ .+++..+.....+..+|+.+.+.+|..-+..-...+ .+++.|+.+++..+....+. +...-. +
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 4678899998776 344333333345678999999999874322212222 36788999999988633322 222223 8
Q ss_pred cCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCceEEEeecceeeeeeccccccccccccEEEe
Q 040144 175 CNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRV 254 (289)
Q Consensus 175 ~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l 254 (289)
+.|+.+.++.+-.+.+-++. .+...-.....|..+.++++.... +.....+..+++|+.+++
T Consensus 372 ~~lr~lslshce~itD~gi~-~l~~~~c~~~~l~~lEL~n~p~i~-----------------d~~Le~l~~c~~Leri~l 433 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIR-HLSSSSCSLEGLEVLELDNCPLIT-----------------DATLEHLSICRNLERIEL 433 (483)
T ss_pred chhccCChhhhhhhhhhhhh-hhhhccccccccceeeecCCCCch-----------------HHHHHHHhhCcccceeee
Confidence 88998887432111111111 011222344567777776664431 222225667788888888
Q ss_pred cCCe
Q 040144 255 GGNQ 258 (289)
Q Consensus 255 ~~n~ 258 (289)
-++.
T Consensus 434 ~~~q 437 (483)
T KOG4341|consen 434 IDCQ 437 (483)
T ss_pred echh
Confidence 7763
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.76 E-value=1.1e-06 Score=61.41 Aligned_cols=106 Identities=22% Similarity=0.299 Sum_probs=71.7
Q ss_pred CCCEEEccCceeeeee--ChhhhcCCCCccEEeCCCCCcccCCCCcccc--ccCcceeeccccccccCCccccccccccc
Q 040144 127 HLPFLDLGFNNFQGTI--DLEALGNLTSINRLDLSLNTGLTGRIPRSMA--LCNLKSINLQESLDMRSSSIYGHLTDQLG 202 (289)
Q Consensus 127 ~L~~L~l~~n~~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~--~~~L~~L~l~~~l~l~~~~~~~~~~~~l~ 202 (289)
-+..+++++|.+. .+ ....+.+...|...++++|. +. .+|..+. ++..+.+++ +.|++. .+|..++
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~-fk-~fp~kft~kf~t~t~lNl------~~neis-dvPeE~A 97 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNG-FK-KFPKKFTIKFPTATTLNL------ANNEIS-DVPEELA 97 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccch-hh-hCCHHHhhccchhhhhhc------chhhhh-hchHHHh
Confidence 4666777888664 33 02234455667778888887 55 4555554 666776665 777777 4555588
Q ss_pred CCCCCcEEEccCCeeeecCCCceEEEeecceeeeeeccccccccccccEEEecCCeeee
Q 040144 203 QFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTL 261 (289)
Q Consensus 203 ~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 261 (289)
.++.|+.|++++|.+. ..|. .+..+.++-.|+..+|.+..
T Consensus 98 am~aLr~lNl~~N~l~------------------~~p~-vi~~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 98 AMPALRSLNLRFNPLN------------------AEPR-VIAPLIKLDMLDSPENARAE 137 (177)
T ss_pred hhHHhhhcccccCccc------------------cchH-HHHHHHhHHHhcCCCCcccc
Confidence 8888888888888777 4555 45557788888888877664
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.75 E-value=6.7e-05 Score=56.24 Aligned_cols=108 Identities=22% Similarity=0.192 Sum_probs=72.4
Q ss_pred CCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCc-ccccCCCCCc
Q 040144 26 SNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSP-LATVNFSSLT 104 (289)
Q Consensus 26 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~l~~~~~L~ 104 (289)
.+...+++++|.+..... +..++.|.+|.+.+|.+....+. ....+++|+.|.+.+|.+..... ..+..+|+|+
T Consensus 42 d~~d~iDLtdNdl~~l~~---lp~l~rL~tLll~nNrIt~I~p~--L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN---LPHLPRLHTLLLNNNRITRIDPD--LDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE 116 (233)
T ss_pred cccceecccccchhhccc---CCCccccceEEecCCcceeeccc--hhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence 355677888877666654 56678888888888888776331 22345778888888888776432 4566788888
Q ss_pred EEeccCCCCCCcch--hhHhhcCCCCCEEEccCcee
Q 040144 105 MLDLSHNQFDNSFI--LSWVFALSHLPFLDLGFNNF 138 (289)
Q Consensus 105 ~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~ 138 (289)
+|.+-+|.++...- ...+..+++|+.||+..-..
T Consensus 117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred eeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 88888887752111 11345678888888765543
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=2.5e-06 Score=66.85 Aligned_cols=100 Identities=22% Similarity=0.122 Sum_probs=77.3
Q ss_pred CCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEE
Q 040144 3 NLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVEL 82 (289)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 82 (289)
+++.|++++|.+++.. ...+|+.|+.|.++-|.+....+ +..|++|++|+|+.|.+.+... ...+.++|+|+.|
T Consensus 20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~p---l~rCtrLkElYLRkN~I~sldE-L~YLknlpsLr~L 93 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAP---LQRCTRLKELYLRKNCIESLDE-LEYLKNLPSLRTL 93 (388)
T ss_pred HhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchh---HHHHHHHHHHHHHhcccccHHH-HHHHhcCchhhhH
Confidence 5678899999887532 24678999999999988887765 6789999999999999888643 3478899999999
Q ss_pred EccCCccCCCCc-----ccccCCCCCcEEec
Q 040144 83 RLSNCQLQHFSP-----LATVNFSSLTMLDL 108 (289)
Q Consensus 83 ~l~~~~l~~~~~-----~~l~~~~~L~~L~l 108 (289)
.+..|......+ ..+..+|+|++||=
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccC
Confidence 999887665433 23456788887764
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.45 E-value=8.5e-05 Score=57.89 Aligned_cols=114 Identities=20% Similarity=0.209 Sum_probs=67.9
Q ss_pred CCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCC-ccc
Q 040144 18 IPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFS-PLA 96 (289)
Q Consensus 18 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~ 96 (289)
+......+..|+.+++.++...+... +-.+++|++|.++.|.+.....+......+|+|+++.+++|.+..+- ...
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~~---~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLTN---FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP 111 (260)
T ss_pred cccccccccchhhhhhhccceeeccc---CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch
Confidence 44444455677777777665554443 45577888888888854433222224456688888888888876421 133
Q ss_pred ccCCCCCcEEeccCCCCCCc--chhhHhhcCCCCCEEEcc
Q 040144 97 TVNFSSLTMLDLSHNQFDNS--FILSWVFALSHLPFLDLG 134 (289)
Q Consensus 97 l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~ 134 (289)
+..+.+|..|++..|..+.- .-...+.-+++|++|+..
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 45567777888887766521 111234456677776643
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.40 E-value=0.0012 Score=55.85 Aligned_cols=12 Identities=8% Similarity=-0.169 Sum_probs=5.6
Q ss_pred CCCCcEEeCCCc
Q 040144 25 LSNLQFLDLSSK 36 (289)
Q Consensus 25 l~~L~~L~l~~~ 36 (289)
+.++++|++++|
T Consensus 51 ~~~l~~L~Is~c 62 (426)
T PRK15386 51 ARASGRLYIKDC 62 (426)
T ss_pred hcCCCEEEeCCC
Confidence 344444444444
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.24 E-value=0.0014 Score=55.41 Aligned_cols=135 Identities=9% Similarity=0.093 Sum_probs=78.2
Q ss_pred hhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCccccccCcceeeccccccccCCcccccccccc
Q 040144 122 VFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMALCNLKSINLQESLDMRSSSIYGHLTDQL 201 (289)
Q Consensus 122 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~l~l~~~~~~~~~~~~l 201 (289)
+..+..++.|++++|.+. .+ |. -.++|++|.++++. --..+|..+ .++|+.|.+ ++|.....+|.
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sL-P~---LP~sLtsL~Lsnc~-nLtsLP~~L-P~nLe~L~L------s~Cs~L~sLP~-- 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SL-PV---LPNELTEITIENCN-NLTTLPGSI-PEGLEKLTV------CHCPEISGLPE-- 112 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-cc-CC---CCCCCcEEEccCCC-CcccCCchh-hhhhhheEc------cCccccccccc--
Confidence 445788999999999877 56 42 23469999998876 223555443 467888876 55522223443
Q ss_pred cCCCCCcEEEccCCee--eecCCCce-EEEeecceee--eeeccccccccccccEEEecCCeeeeccCCCccccccccEE
Q 040144 202 GQFRNLVTFNLVNNSI--VGFIPWSF-ELHIYDNKLN--VTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVAL 276 (289)
Q Consensus 202 ~~~~~L~~L~l~~n~~--~~~~~~~~-~L~l~~n~~~--~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l 276 (289)
+|+.|+++++.. -+.+|..+ .|.+.+++.. ..++. .+. ++|+.|++++|.... .|..+. .+|+.|
T Consensus 113 ----sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~-~LP--sSLk~L~Is~c~~i~-LP~~LP--~SLk~L 182 (426)
T PRK15386 113 ----SVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDN-LIS--PSLKTLSLTGCSNII-LPEKLP--ESLQSI 182 (426)
T ss_pred ----ccceEEeCCCCCcccccCcchHhheecccccccccccccc-ccC--CcccEEEecCCCccc-Cccccc--ccCcEE
Confidence 466677766543 23455555 5555432211 01111 111 577888887776542 444332 467777
Q ss_pred ecccc
Q 040144 277 GLHSC 281 (289)
Q Consensus 277 ~l~~n 281 (289)
+++.+
T Consensus 183 ~ls~n 187 (426)
T PRK15386 183 TLHIE 187 (426)
T ss_pred Eeccc
Confidence 76654
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.23 E-value=0.0013 Score=46.72 Aligned_cols=84 Identities=19% Similarity=0.212 Sum_probs=28.5
Q ss_pred CccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccC
Q 040144 20 QQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVN 99 (289)
Q Consensus 20 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 99 (289)
.+|.++++|+.+.+.. ....++... +.++..|+.+.+..+ +..... ..+..++.++.+.+.. .+.......+..
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~-F~~~~~l~~i~~~~~-~~~i~~--~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENA-FSNCTSLKSINFPNN-LTSIGD--NAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTT-TTT-TT-SEEEESST-TSCE-T--TTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhh-ccccccccccccccc-ccccce--eeeecccccccccccc-cccccccccccc
Confidence 3455555555555543 222222222 444445555555442 222211 1334444455555533 222222233344
Q ss_pred CCCCcEEecc
Q 040144 100 FSSLTMLDLS 109 (289)
Q Consensus 100 ~~~L~~L~l~ 109 (289)
+++++.+.+.
T Consensus 80 ~~~l~~i~~~ 89 (129)
T PF13306_consen 80 CTNLKNIDIP 89 (129)
T ss_dssp -TTECEEEET
T ss_pred cccccccccC
Confidence 4444444443
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.09 E-value=8.9e-05 Score=65.28 Aligned_cols=78 Identities=15% Similarity=0.081 Sum_probs=34.0
Q ss_pred ccCCCCCcEEEccCCeeeecCCCceEEEeecceee-eeeccccccccccccEEEecCCeeeec-cCCCccc-cccccEEe
Q 040144 201 LGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLN-VTLFELHFANLIEMSWFRVGGNQLTLE-VKHDWIP-HFQLVALG 277 (289)
Q Consensus 201 l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~-~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~-~~~L~~l~ 277 (289)
+..+++++.+.+..+......- .+.+.+|... ..+.. ......+++.|++..+..... ....... +..+..++
T Consensus 358 ~~~~~~l~~~~l~~~~~~~~~~---~~~l~gc~~l~~~l~~-~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~ 433 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCGISDLGL---ELSLRGCPNLTESLEL-RLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLD 433 (482)
T ss_pred HhcCCCcchhhhhhhhccCcch---HHHhcCCcccchHHHH-HhccCCccceEecccCccccccchHHHhhhhhccccCC
Confidence 4566777777777665322110 1233333211 11111 122223367777776653321 1111111 44556666
Q ss_pred ccccc
Q 040144 278 LHSCY 282 (289)
Q Consensus 278 l~~n~ 282 (289)
++++.
T Consensus 434 ~~~~~ 438 (482)
T KOG1947|consen 434 LSGCR 438 (482)
T ss_pred ccCcc
Confidence 66653
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=2.9e-05 Score=61.12 Aligned_cols=80 Identities=21% Similarity=0.130 Sum_probs=38.7
Q ss_pred cccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEE
Q 040144 52 LLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFL 131 (289)
Q Consensus 52 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 131 (289)
..+.|++-+|.+.+.. ...+|+.|++|.++-|.++.. ..+..|.+|++|++..|.|.+....+.+.++++|+.|
T Consensus 20 ~vkKLNcwg~~L~DIs----ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS----ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HhhhhcccCCCccHHH----HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 4444555555444421 344555555555555555543 2234455555555555555422223334455555555
Q ss_pred EccCce
Q 040144 132 DLGFNN 137 (289)
Q Consensus 132 ~l~~n~ 137 (289)
++..|.
T Consensus 94 WL~ENP 99 (388)
T KOG2123|consen 94 WLDENP 99 (388)
T ss_pred hhccCC
Confidence 555544
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.03 E-value=0.0036 Score=44.38 Aligned_cols=101 Identities=17% Similarity=0.242 Sum_probs=58.7
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
++|+.+.+.. .+......+|..+++|+.+.+..+ ...++... +.+++.++.+.+.. .+..... ..+..++.++.
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~-F~~~~~l~~i~~~~-~~~~i~~--~~F~~~~~l~~ 85 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNA-FSNCKSLESITFPN-NLKSIGD--NAFSNCTNLKN 85 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTT-TTT-TT-EEEEETS-TT-EE-T--TTTTT-TTECE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceee-eecccccccccccc-ccccccc--ccccccccccc
Confidence 5788888875 455556677899999999999874 55554433 77888899999976 3333322 15667899999
Q ss_pred EEccCCccCCCCcccccCCCCCcEEeccC
Q 040144 82 LRLSNCQLQHFSPLATVNFSSLTMLDLSH 110 (289)
Q Consensus 82 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 110 (289)
+.+..+ +..+....+.++ .++.+.+..
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 999765 554445566666 888887765
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.90 E-value=0.00054 Score=53.54 Aligned_cols=104 Identities=21% Similarity=0.215 Sum_probs=67.2
Q ss_pred CcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCc-ccCCCCcccEEeccCccccccchhhHhhhcCCCccEE
Q 040144 4 LRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFL-WLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVEL 82 (289)
Q Consensus 4 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 82 (289)
++.+++.++.++. -..+-.+++|++|.++.|......... ....++.|++++++.|++..... ...+..+.+|..|
T Consensus 45 le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst-l~pl~~l~nL~~L 121 (260)
T KOG2739|consen 45 LELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST-LRPLKELENLKSL 121 (260)
T ss_pred hhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc-cchhhhhcchhhh
Confidence 4445555555442 123556889999999998533332222 13567999999999998876421 2366778889999
Q ss_pred EccCCccCCCCc---ccccCCCCCcEEeccC
Q 040144 83 RLSNCQLQHFSP---LATVNFSSLTMLDLSH 110 (289)
Q Consensus 83 ~l~~~~l~~~~~---~~l~~~~~L~~L~l~~ 110 (289)
++.+|..+.... ..+.-+++|++|+-..
T Consensus 122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 122 DLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hcccCCccccccHHHHHHHHhhhhccccccc
Confidence 999987765311 2344568887776544
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.12 E-value=0.005 Score=28.70 Aligned_cols=21 Identities=19% Similarity=0.531 Sum_probs=14.4
Q ss_pred cccEEEecCCeeeeccCCCccc
Q 040144 248 EMSWFRVGGNQLTLEVKHDWIP 269 (289)
Q Consensus 248 ~L~~l~l~~n~~~~~~~~~~~~ 269 (289)
+|++|++++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4677888888777 46655554
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.07 E-value=0.0039 Score=29.07 Aligned_cols=22 Identities=41% Similarity=0.739 Sum_probs=15.6
Q ss_pred CCcEEEccCCcccccCCCccCCC
Q 040144 3 NLRYLNFSKTRICGIIPQQLGNL 25 (289)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~l~~l 25 (289)
+|++|++++|+++ .+|+.|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 5788888888887 566666543
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.32 E-value=0.0092 Score=25.80 Aligned_cols=13 Identities=23% Similarity=0.263 Sum_probs=5.6
Q ss_pred cccEEecccccCc
Q 040144 272 QLVALGLHSCYIG 284 (289)
Q Consensus 272 ~L~~l~l~~n~~~ 284 (289)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555556655553
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.84 E-value=0.014 Score=51.37 Aligned_cols=114 Identities=24% Similarity=0.113 Sum_probs=64.9
Q ss_pred CCCCcEEeCCCccccccCC-CcccCCCCcccEEeccCc-ccccc-c-hhhHhhhcCCCccEEEccCCc-cCCCCcccccC
Q 040144 25 LSNLQFLDLSSKYLLYVDN-FLWLSGISLLEHLDLRYV-NLSIA-F-DWLMVANKLLSLVELRLSNCQ-LQHFSPLATVN 99 (289)
Q Consensus 25 l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~-~~~~~-~-~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~ 99 (289)
++.|+.+.+.++....... ......++.|+.|+++.+ ..... + ........++.|+.+++.++. +++.....+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 5677777777664333211 111345777777777763 11111 1 111233455777777777776 55443333332
Q ss_pred -CCCCcEEeccCCC-CCCcchhhHhhcCCCCCEEEccCcee
Q 040144 100 -FSSLTMLDLSHNQ-FDNSFILSWVFALSHLPFLDLGFNNF 138 (289)
Q Consensus 100 -~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~ 138 (289)
++.|+.|.+..+. +++..+......++.|++|++++|..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 6777777776665 56555555556677788888777754
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.04 E-value=0.00059 Score=59.51 Aligned_cols=21 Identities=14% Similarity=0.086 Sum_probs=14.6
Q ss_pred cccccccccEEEecCCeeeec
Q 040144 242 HFANLIEMSWFRVGGNQLTLE 262 (289)
Q Consensus 242 ~~~~~~~L~~l~l~~n~~~~~ 262 (289)
.+..+..++.+.+..|.+.+.
T Consensus 285 ~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 285 VLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHhhhHHHHHhhcccCccccH
Confidence 445667778888887777654
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.80 E-value=0.012 Score=28.03 Aligned_cols=18 Identities=22% Similarity=0.136 Sum_probs=9.9
Q ss_pred cccccEEEecCCeeeecc
Q 040144 246 LIEMSWFRVGGNQLTLEV 263 (289)
Q Consensus 246 ~~~L~~l~l~~n~~~~~~ 263 (289)
+++|+.|+|++|++++..
T Consensus 1 ~~~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEG 18 (24)
T ss_dssp -TT-SEEE-TSSBEHHHH
T ss_pred CCCCCEEEccCCcCCHHH
Confidence 356777777777776543
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.73 E-value=0.00045 Score=60.25 Aligned_cols=185 Identities=20% Similarity=0.197 Sum_probs=100.5
Q ss_pred ccEEEccCCccCCCCcc----cccCCCCCcEEeccCCCCCCcchhh---HhhcC-CCCCEEEccCceeeee----eChhh
Q 040144 79 LVELRLSNCQLQHFSPL----ATVNFSSLTMLDLSHNQFDNSFILS---WVFAL-SHLPFLDLGFNNFQGT----IDLEA 146 (289)
Q Consensus 79 L~~L~l~~~~l~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~~-~~L~~L~l~~n~~~~~----~~~~~ 146 (289)
+..+.+.+|.+...... .+...++|+.|+++.|.+.+..... .+... ..++.|++..|.++.. + ...
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l-~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPL-AAV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHH-HHH
Confidence 66777777777664332 2345677777778777776322221 11122 3456666666766532 2 344
Q ss_pred hcCCCCccEEeCCCCCcccCC--------CCcccc-ccCcceeeccccccccCCcccccc----cccccCCCC-CcEEEc
Q 040144 147 LGNLTSINRLDLSLNTGLTGR--------IPRSMA-LCNLKSINLQESLDMRSSSIYGHL----TDQLGQFRN-LVTFNL 212 (289)
Q Consensus 147 ~~~~~~L~~L~l~~n~~~~~~--------~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~----~~~l~~~~~-L~~L~l 212 (289)
+.....++.+++..|. +... .+..+. ..++++|+ +..|.++... ..+++..+. +..+++
T Consensus 168 L~~~~~l~~l~l~~n~-l~~~g~~~l~~~l~~~~~~~~~le~L~------L~~~~~t~~~c~~l~~~l~~~~~~~~el~l 240 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNG-LIELGLLVLSQALESAASPLSSLETLK------LSRCGVTSSSCALLDEVLASGESLLRELDL 240 (478)
T ss_pred HhcccchhHHHHHhcc-cchhhhHHHhhhhhhhhcccccHHHHh------hhhcCcChHHHHHHHHHHhccchhhHHHHH
Confidence 5556677777777776 3211 011111 22233333 2455544221 122333333 445666
Q ss_pred cCCeeeecCCCceEEEeecceeeeeecccccccc-ccccEEEecCCeeeeccC----CCccccccccEEecccccCcc
Q 040144 213 VNNSIVGFIPWSFELHIYDNKLNVTLFELHFANL-IEMSWFRVGGNQLTLEVK----HDWIPHFQLVALGLHSCYIGS 285 (289)
Q Consensus 213 ~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~-~~L~~l~l~~n~~~~~~~----~~~~~~~~L~~l~l~~n~~~~ 285 (289)
+.|.+.+.+- ..+.. .+..+ .+++.+++..|.+++... ..+..++.++++.+++|.+++
T Consensus 241 ~~n~l~d~g~-------------~~L~~-~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 241 ASNKLGDVGV-------------EKLLP-CLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HhcCcchHHH-------------HHHHH-HhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 5555542211 01222 34444 678999999999886533 355677889999999998864
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.96 E-value=0.029 Score=42.50 Aligned_cols=80 Identities=25% Similarity=0.214 Sum_probs=46.9
Q ss_pred CCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhc-CCCCccEEeCCCCCcccCCCCcccc-ccCcce
Q 040144 102 SLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALG-NLTSINRLDLSLNTGLTGRIPRSMA-LCNLKS 179 (289)
Q Consensus 102 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~ 179 (289)
.++.++.++..|. .+-...+.+++.++.|.+.+|..-+....+-++ ..++|+.|++++|..+++..-..+. +++|+.
T Consensus 102 ~IeaVDAsds~I~-~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIM-YEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHH-HHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 3567777777665 444445566677777777777544322112222 3467888888877755544333444 666666
Q ss_pred eec
Q 040144 180 INL 182 (289)
Q Consensus 180 L~l 182 (289)
|.+
T Consensus 181 L~l 183 (221)
T KOG3864|consen 181 LHL 183 (221)
T ss_pred HHh
Confidence 655
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.21 E-value=0.03 Score=42.41 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=52.9
Q ss_pred CCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhh-cCCCccEEEccCCc-cCCCCcccccCCCCCc
Q 040144 27 NLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVAN-KLLSLVELRLSNCQ-LQHFSPLATVNFSSLT 104 (289)
Q Consensus 27 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~ 104 (289)
.++.++-+++.+...+ ...+.+++.++.|.+.+|.-.++.. ...+. -.++|+.|++++|. |++.....+..+++|+
T Consensus 102 ~IeaVDAsds~I~~eG-le~L~~l~~i~~l~l~~ck~~dD~~-L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEG-LEHLRDLRSIKSLSLANCKYFDDWC-LERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHH-HHHHhccchhhhheeccccchhhHH-HHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 4556666665555444 2236677788888888886544422 11222 45789999999774 6655555667778888
Q ss_pred EEeccCC
Q 040144 105 MLDLSHN 111 (289)
Q Consensus 105 ~L~l~~~ 111 (289)
.|.+.+-
T Consensus 180 ~L~l~~l 186 (221)
T KOG3864|consen 180 RLHLYDL 186 (221)
T ss_pred HHHhcCc
Confidence 8877653
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.77 E-value=0.32 Score=23.37 Aligned_cols=16 Identities=31% Similarity=0.573 Sum_probs=9.7
Q ss_pred CCCCcEEEccCCcccc
Q 040144 1 MGNLRYLNFSKTRICG 16 (289)
Q Consensus 1 ~~~L~~L~l~~~~~~~ 16 (289)
+++|++|+|.+|.+..
T Consensus 1 L~~L~~L~L~~N~l~~ 16 (26)
T smart00370 1 LPNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCCEEECCCCcCCc
Confidence 3566666666666653
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.77 E-value=0.32 Score=23.37 Aligned_cols=16 Identities=31% Similarity=0.573 Sum_probs=9.7
Q ss_pred CCCCcEEEccCCcccc
Q 040144 1 MGNLRYLNFSKTRICG 16 (289)
Q Consensus 1 ~~~L~~L~l~~~~~~~ 16 (289)
+++|++|+|.+|.+..
T Consensus 1 L~~L~~L~L~~N~l~~ 16 (26)
T smart00369 1 LPNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCCEEECCCCcCCc
Confidence 3566666666666653
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=86.48 E-value=0.48 Score=22.96 Aligned_cols=16 Identities=19% Similarity=0.355 Sum_probs=8.2
Q ss_pred cccEEecccccCccCCC
Q 040144 272 QLVALGLHSCYIGSRFP 288 (289)
Q Consensus 272 ~L~~l~l~~n~~~~~~p 288 (289)
+|+.|++++|+++ .+|
T Consensus 3 ~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 3 SLKELNVSNNQLT-SLP 18 (26)
T ss_pred ccceeecCCCccc-cCc
Confidence 4555555555554 444
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=80.19 E-value=1.2 Score=21.98 Aligned_cols=14 Identities=29% Similarity=0.304 Sum_probs=8.7
Q ss_pred ccccEEecccccCc
Q 040144 271 FQLVALGLHSCYIG 284 (289)
Q Consensus 271 ~~L~~l~l~~n~~~ 284 (289)
++|++|++++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666664
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=78.93 E-value=1.5 Score=21.29 Aligned_cols=15 Identities=7% Similarity=0.180 Sum_probs=10.3
Q ss_pred ccccEEEecCCeeee
Q 040144 247 IEMSWFRVGGNQLTL 261 (289)
Q Consensus 247 ~~L~~l~l~~n~~~~ 261 (289)
++|+.|++++|+|..
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 467777777777754
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=78.45 E-value=1.3 Score=21.27 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=10.4
Q ss_pred cccccEEecccc-cCcc
Q 040144 270 HFQLVALGLHSC-YIGS 285 (289)
Q Consensus 270 ~~~L~~l~l~~n-~~~~ 285 (289)
+++|+.|++++| .+++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 456777777777 3543
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=77.55 E-value=0.074 Score=41.39 Aligned_cols=88 Identities=17% Similarity=0.149 Sum_probs=59.1
Q ss_pred ccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCC
Q 040144 21 QLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNF 100 (289)
Q Consensus 21 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 100 (289)
.+......+.||++.+........ +..+..+.+++++.+.+...+. .+.....+..++...|..... |..++..
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n--~s~~t~~~rl~~sknq~~~~~~---d~~q~~e~~~~~~~~n~~~~~-p~s~~k~ 110 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKN--FSILTRLVRLDLSKNQIKFLPK---DAKQQRETVNAASHKNNHSQQ-PKSQKKE 110 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccc--hHHHHHHHHHhccHhhHhhChh---hHHHHHHHHHHHhhccchhhC-Ccccccc
Confidence 345566677777777654433322 4456777888888777666554 566666677777777776654 5677788
Q ss_pred CCCcEEeccCCCCC
Q 040144 101 SSLTMLDLSHNQFD 114 (289)
Q Consensus 101 ~~L~~L~l~~~~~~ 114 (289)
+.+++++...+.+.
T Consensus 111 ~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 111 PHPKKNEQKKTEFF 124 (326)
T ss_pred CCcchhhhccCcch
Confidence 88888888887664
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=66.25 E-value=5.9 Score=35.19 Aligned_cols=38 Identities=18% Similarity=0.026 Sum_probs=17.5
Q ss_pred CCcccEEeccCccccccchhhHhhhcCCCccEEEccCC
Q 040144 50 ISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNC 87 (289)
Q Consensus 50 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 87 (289)
.+.+..++|++|.+.....+.......|.|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34444555555544443222223334455555555555
No 87
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=63.07 E-value=0.16 Score=39.64 Aligned_cols=83 Identities=14% Similarity=0.083 Sum_probs=62.2
Q ss_pred CCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEE
Q 040144 3 NLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVEL 82 (289)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 82 (289)
..+.|+++.|.... .-.-|.-++.+..|+++.+.+...+.. +.....++.+++..|.....|. +....++++++
T Consensus 43 r~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~~~~~d--~~q~~e~~~~~~~~n~~~~~p~---s~~k~~~~k~~ 116 (326)
T KOG0473|consen 43 RVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIKFLPKD--AKQQRETVNAASHKNNHSQQPK---SQKKEPHPKKN 116 (326)
T ss_pred eeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHhhChhh--HHHHHHHHHHHhhccchhhCCc---cccccCCcchh
Confidence 45678888887653 333466778888999998776555433 5677888899999888887765 78899999999
Q ss_pred EccCCccCC
Q 040144 83 RLSNCQLQH 91 (289)
Q Consensus 83 ~l~~~~l~~ 91 (289)
+..++.+..
T Consensus 117 e~k~~~~~~ 125 (326)
T KOG0473|consen 117 EQKKTEFFR 125 (326)
T ss_pred hhccCcchH
Confidence 999887553
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.55 E-value=5.8 Score=35.21 Aligned_cols=67 Identities=30% Similarity=0.233 Sum_probs=40.0
Q ss_pred CCCCCCcEEeCCCccccccCCCccc-CCCCcccEEeccCc--cccccchhhHhhhcCCCccEEEccCCccCC
Q 040144 23 GNLSNLQFLDLSSKYLLYVDNFLWL-SGISLLEHLDLRYV--NLSIAFDWLMVANKLLSLVELRLSNCQLQH 91 (289)
Q Consensus 23 ~~l~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 91 (289)
.+.+.+..+++++|..........+ ..-++|..|+|++| .+..... . .-.+...|++|.+.+|.+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~e-l-~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESE-L-DKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhh-h-hhhcCCCHHHeeecCCcccc
Confidence 3456777777887776555543333 34677888888887 3333321 1 11233457788888887664
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.71 E-value=42 Score=36.44 Aligned_cols=32 Identities=34% Similarity=0.404 Sum_probs=23.8
Q ss_pred EeecceeeeeeccccccccccccEEEecCCeee
Q 040144 228 HIYDNKLNVTLFELHFANLIEMSWFRVGGNQLT 260 (289)
Q Consensus 228 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 260 (289)
||++|+|+ .++...|..+++|+.|+|++|++.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccc
Confidence 45667776 566667778888889998888653
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=20.87 E-value=1.8e+02 Score=25.95 Aligned_cols=19 Identities=11% Similarity=-0.148 Sum_probs=10.7
Q ss_pred cCCCccEEEccCCccCCCC
Q 040144 75 KLLSLVELRLSNCQLQHFS 93 (289)
Q Consensus 75 ~~~~L~~L~l~~~~l~~~~ 93 (289)
.-+.+++++++.+.+....
T Consensus 163 pnpr~r~~dls~npi~dkv 181 (553)
T KOG4242|consen 163 PNPRARQHDLSPNPIGDKV 181 (553)
T ss_pred CcchhhhhccCCCcccccC
Confidence 3455666666666655443
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.65 E-value=67 Score=35.07 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=18.3
Q ss_pred ccCCcccccccccccCCCCCcEEEccCCeee
Q 040144 188 MRSSSIYGHLTDQLGQFRNLVTFNLVNNSIV 218 (289)
Q Consensus 188 l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 218 (289)
|++|.|....+..|..+++|+.|+|++|.+.
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 4555555555555666666666666666554
Done!