Query 040144
Match_columns 289
No_of_seqs 174 out of 2715
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 08:28:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040144.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040144hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2E-35 6.7E-40 270.8 23.3 279 3-289 395-722 (768)
2 3rgz_A Protein brassinosteroid 100.0 3.8E-35 1.3E-39 268.9 22.0 227 50-289 393-698 (768)
3 3v47_A TOLL-like receptor 5B a 100.0 6.9E-33 2.4E-37 239.9 22.3 274 2-288 30-412 (455)
4 2id5_A Lingo-1, leucine rich r 100.0 8.5E-32 2.9E-36 234.5 21.9 276 2-284 32-333 (477)
5 1ogq_A PGIP-2, polygalacturona 100.0 2.7E-31 9.3E-36 218.7 19.5 250 2-285 50-306 (313)
6 2id5_A Lingo-1, leucine rich r 100.0 3.4E-31 1.1E-35 230.7 19.9 265 5-285 14-310 (477)
7 3t6q_A CD180 antigen; protein- 100.0 3.9E-30 1.3E-34 230.3 26.4 134 2-139 57-192 (606)
8 3t6q_A CD180 antigen; protein- 100.0 3.6E-30 1.2E-34 230.5 24.3 271 3-288 255-540 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 6.1E-30 2.1E-34 229.0 23.1 131 3-137 33-164 (606)
10 4eco_A Uncharacterized protein 100.0 1.8E-30 6.1E-35 233.2 19.1 273 1-288 205-559 (636)
11 4eco_A Uncharacterized protein 100.0 4.3E-31 1.5E-35 237.2 15.0 274 3-288 82-504 (636)
12 3v47_A TOLL-like receptor 5B a 100.0 1.4E-29 4.6E-34 219.3 23.8 270 6-285 14-385 (455)
13 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-29 3.6E-34 227.5 22.8 157 125-284 349-534 (606)
14 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-29 3.8E-34 234.9 22.2 277 2-284 24-375 (844)
15 2z63_A TOLL-like receptor 4, v 100.0 7.8E-29 2.7E-33 220.3 25.0 134 3-139 29-162 (570)
16 2z7x_B TOLL-like receptor 1, v 100.0 3.7E-29 1.3E-33 220.1 22.1 134 148-285 321-482 (520)
17 2z63_A TOLL-like receptor 4, v 100.0 1.2E-28 4.1E-33 219.1 24.8 156 123-288 370-535 (570)
18 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.2E-29 1.1E-33 222.4 20.8 107 2-114 52-159 (562)
19 4ecn_A Leucine-rich repeat pro 100.0 1.6E-29 5.5E-34 231.6 19.1 164 1-173 447-639 (876)
20 3o6n_A APL1; leucine-rich repe 100.0 4.6E-29 1.6E-33 211.8 19.9 262 2-284 69-352 (390)
21 1ziw_A TOLL-like receptor 3; i 100.0 1.7E-28 5.8E-33 222.5 24.9 281 3-287 249-600 (680)
22 1xku_A Decorin; proteoglycan, 100.0 8.3E-29 2.9E-33 205.6 20.9 260 3-284 32-306 (330)
23 3o6n_A APL1; leucine-rich repe 100.0 1.5E-28 5.2E-33 208.6 22.5 264 1-285 44-332 (390)
24 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-29 5.7E-34 222.3 16.3 107 2-114 21-128 (520)
25 1ogq_A PGIP-2, polygalacturona 100.0 3E-29 1E-33 206.5 16.5 227 51-289 50-286 (313)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.8E-29 1.3E-33 221.9 18.2 266 1-288 75-489 (562)
27 2ft3_A Biglycan; proteoglycan, 100.0 7.3E-29 2.5E-33 206.1 18.5 260 3-284 34-307 (332)
28 4fmz_A Internalin; leucine ric 100.0 5.4E-28 1.8E-32 202.1 22.5 253 2-284 66-324 (347)
29 4g8a_A TOLL-like receptor 4; l 100.0 4.6E-28 1.6E-32 217.8 23.5 136 3-141 53-188 (635)
30 1ziw_A TOLL-like receptor 3; i 100.0 2.1E-28 7E-33 221.9 21.0 276 2-283 25-365 (680)
31 4fmz_A Internalin; leucine ric 100.0 7.1E-28 2.4E-32 201.3 22.2 254 1-284 87-346 (347)
32 4ecn_A Leucine-rich repeat pro 100.0 4.3E-29 1.5E-33 228.8 15.6 267 3-288 324-744 (876)
33 3oja_B Anopheles plasmodium-re 100.0 3.3E-28 1.1E-32 217.2 20.4 263 1-284 74-358 (597)
34 1xku_A Decorin; proteoglycan, 100.0 6E-27 2.1E-31 194.4 25.1 262 2-282 52-330 (330)
35 2z80_A TOLL-like receptor 2, v 100.0 1.4E-28 4.7E-33 206.1 14.3 265 5-287 34-317 (353)
36 2z66_A Variable lymphocyte rec 100.0 9.4E-28 3.2E-32 197.2 19.0 250 5-285 10-262 (306)
37 3j0a_A TOLL-like receptor 5; m 100.0 1.5E-27 5.1E-32 220.8 21.4 268 1-284 47-394 (844)
38 1o6v_A Internalin A; bacterial 100.0 5.2E-27 1.8E-31 203.6 22.6 79 2-89 68-146 (466)
39 2z81_A CD282 antigen, TOLL-lik 100.0 7.3E-28 2.5E-32 213.2 16.7 63 1-64 49-111 (549)
40 2ft3_A Biglycan; proteoglycan, 100.0 7.4E-27 2.5E-31 194.0 21.5 261 2-282 54-331 (332)
41 1o6v_A Internalin A; bacterial 100.0 1.1E-26 3.9E-31 201.4 23.5 262 1-285 89-389 (466)
42 2z81_A CD282 antigen, TOLL-lik 100.0 4.1E-28 1.4E-32 214.8 14.5 275 2-284 26-423 (549)
43 3zyj_A Leucine-rich repeat-con 100.0 2.7E-26 9.3E-31 197.7 23.6 246 5-284 46-292 (440)
44 4fcg_A Uncharacterized protein 100.0 4.7E-27 1.6E-31 194.6 17.5 231 3-283 82-313 (328)
45 3zyi_A Leucine-rich repeat-con 99.9 3E-26 1E-30 198.0 22.9 246 5-284 57-303 (452)
46 2z66_A Variable lymphocyte rec 99.9 6E-27 2.1E-31 192.3 14.7 231 2-262 28-263 (306)
47 4fcg_A Uncharacterized protein 99.9 9.5E-27 3.2E-31 192.7 16.0 206 50-289 80-295 (328)
48 1ozn_A Reticulon 4 receptor; N 99.9 2.6E-26 8.8E-31 186.7 17.0 199 5-218 14-214 (285)
49 3oja_B Anopheles plasmodium-re 99.9 5.5E-26 1.9E-30 202.8 17.8 265 2-285 51-338 (597)
50 3o53_A Protein LRIM1, AGAP0063 99.9 2.6E-27 9E-32 195.4 8.3 236 2-280 34-271 (317)
51 3zyj_A Leucine-rich repeat-con 99.9 1.4E-25 4.7E-30 193.3 19.1 228 2-260 64-292 (440)
52 3zyi_A Leucine-rich repeat-con 99.9 1.5E-25 5E-30 193.8 19.2 228 2-260 75-303 (452)
53 4g8a_A TOLL-like receptor 4; l 99.9 8.7E-25 3E-29 196.5 24.1 111 1-114 75-186 (635)
54 1ozn_A Reticulon 4 receptor; N 99.9 1.7E-25 5.7E-30 181.9 17.0 205 2-218 32-238 (285)
55 3bz5_A Internalin-J, INLJ; leu 99.9 1.7E-25 5.9E-30 193.0 18.1 254 1-285 41-332 (457)
56 3bz5_A Internalin-J, INLJ; leu 99.9 3.6E-25 1.2E-29 191.0 19.8 252 1-285 63-353 (457)
57 2z80_A TOLL-like receptor 2, v 99.9 1.1E-25 3.8E-30 188.5 15.4 248 2-263 52-317 (353)
58 3oja_A Leucine-rich immune mol 99.9 6.9E-26 2.3E-30 197.1 12.5 235 2-279 34-270 (487)
59 1z7x_W Ribonuclease inhibitor; 99.9 1E-27 3.4E-32 207.9 -0.2 280 2-284 28-383 (461)
60 1wwl_A Monocyte differentiatio 99.9 2E-27 6.9E-32 195.6 1.5 243 22-286 39-311 (312)
61 3o53_A Protein LRIM1, AGAP0063 99.9 2.7E-25 9.2E-30 183.3 10.6 218 23-284 31-250 (317)
62 1jl5_A Outer protein YOPM; leu 99.9 7.7E-24 2.6E-28 182.6 20.1 234 26-288 131-415 (454)
63 1z7x_W Ribonuclease inhibitor; 99.9 9.3E-27 3.2E-31 201.8 0.5 275 3-285 86-412 (461)
64 2z62_A TOLL-like receptor 4, v 99.9 1.6E-23 5.3E-28 169.5 19.3 209 3-222 29-241 (276)
65 2z62_A TOLL-like receptor 4, v 99.9 7.4E-23 2.5E-27 165.5 19.2 206 51-286 28-239 (276)
66 1wwl_A Monocyte differentiatio 99.9 3.9E-24 1.3E-28 176.0 11.2 224 4-261 65-310 (312)
67 3oja_A Leucine-rich immune mol 99.9 9.2E-24 3.1E-28 183.8 14.0 214 27-284 35-250 (487)
68 3rfs_A Internalin B, repeat mo 99.9 1.9E-23 6.7E-28 168.5 14.8 210 22-248 37-247 (272)
69 1jl5_A Outer protein YOPM; leu 99.9 3.6E-22 1.2E-26 172.1 23.1 246 3-288 92-376 (454)
70 2o6q_A Variable lymphocyte rec 99.9 1.2E-22 4.2E-27 163.6 18.5 203 27-262 17-220 (270)
71 3g06_A SSPH2 (leucine-rich rep 99.9 1.5E-22 5.3E-27 179.9 20.3 240 3-288 41-301 (622)
72 3rfs_A Internalin B, repeat mo 99.9 5.1E-23 1.7E-27 166.0 14.5 203 47-289 37-240 (272)
73 2ast_B S-phase kinase-associat 99.9 5.8E-24 2E-28 176.8 9.0 251 4-289 49-311 (336)
74 2o6q_A Variable lymphocyte rec 99.9 7.4E-22 2.5E-26 159.1 20.8 203 3-220 17-220 (270)
75 1p9a_G Platelet glycoprotein I 99.9 2.3E-22 7.7E-27 163.6 16.1 204 21-261 5-209 (290)
76 3goz_A Leucine-rich repeat-con 99.9 6.1E-24 2.1E-28 178.4 6.8 258 6-285 2-298 (362)
77 2ca6_A RAN GTPase-activating p 99.9 1.1E-24 3.9E-29 184.5 -0.5 246 18-286 24-318 (386)
78 1p9a_G Platelet glycoprotein I 99.9 2.7E-21 9.3E-26 157.2 18.0 199 1-218 9-208 (290)
79 4glp_A Monocyte differentiatio 99.9 7.3E-22 2.5E-26 162.3 14.6 220 51-285 64-308 (310)
80 2ca6_A RAN GTPase-activating p 99.9 3E-23 1E-27 175.7 5.7 242 1-263 31-319 (386)
81 1h6u_A Internalin H; cell adhe 99.9 7.2E-21 2.4E-25 156.1 17.9 190 2-219 41-231 (308)
82 1h6u_A Internalin H; cell adhe 99.9 5.1E-21 1.8E-25 157.0 16.4 194 22-261 37-231 (308)
83 2ast_B S-phase kinase-associat 99.9 3.8E-22 1.3E-26 165.8 9.3 236 2-269 70-315 (336)
84 3g06_A SSPH2 (leucine-rich rep 99.9 3E-20 1E-24 165.2 18.2 227 2-271 61-308 (622)
85 3m19_A Variable lymphocyte rec 99.8 4.6E-20 1.6E-24 146.9 17.2 179 52-262 15-194 (251)
86 4glp_A Monocyte differentiatio 99.8 8.6E-21 2.9E-25 155.9 12.3 219 4-235 66-307 (310)
87 2xwt_C Thyrotropin receptor; s 99.8 2.6E-20 8.9E-25 147.3 14.4 177 27-218 32-218 (239)
88 3goz_A Leucine-rich repeat-con 99.8 8.9E-22 3.1E-26 165.2 6.2 241 2-262 22-299 (362)
89 2xwt_C Thyrotropin receptor; s 99.8 1.6E-20 5.3E-25 148.6 12.9 197 52-282 32-237 (239)
90 3ogk_B Coronatine-insensitive 99.8 1.8E-22 6.2E-27 180.1 0.9 209 73-286 289-528 (592)
91 3m19_A Variable lymphocyte rec 99.8 1.2E-19 4.2E-24 144.5 16.0 180 26-220 14-194 (251)
92 3ogk_B Coronatine-insensitive 99.8 4.9E-22 1.7E-26 177.4 1.7 105 174-285 377-502 (592)
93 4ay9_X Follicle-stimulating ho 99.8 3.5E-19 1.2E-23 148.8 14.6 236 5-256 12-255 (350)
94 2p1m_B Transport inhibitor res 99.8 3.1E-21 1E-25 172.2 -0.1 176 99-284 287-519 (594)
95 2o6s_A Variable lymphocyte rec 99.8 9.1E-19 3.1E-23 135.4 12.3 159 77-245 28-187 (208)
96 2o6s_A Variable lymphocyte rec 99.8 1.7E-18 5.8E-23 133.9 13.3 174 79-289 9-183 (208)
97 1h6t_A Internalin B; cell adhe 99.8 3.1E-18 1.1E-22 139.2 14.8 170 23-218 43-213 (291)
98 2p1m_B Transport inhibitor res 99.8 5.2E-20 1.8E-24 164.3 3.1 165 118-285 281-495 (594)
99 1h6t_A Internalin B; cell adhe 99.8 2.3E-18 7.9E-23 140.0 12.3 173 47-262 42-215 (291)
100 1m9s_A Internalin B; cell inva 99.8 4.4E-18 1.5E-22 151.1 14.4 173 22-220 39-212 (605)
101 4ay9_X Follicle-stimulating ho 99.8 8.2E-18 2.8E-22 140.4 13.3 231 29-280 12-255 (350)
102 1m9s_A Internalin B; cell inva 99.7 4E-17 1.4E-21 144.9 17.3 169 2-196 43-212 (605)
103 3cvr_A Invasion plasmid antige 99.7 1.4E-17 5E-22 146.4 13.5 183 52-270 60-253 (571)
104 4ezg_A Putative uncharacterize 99.7 1.1E-17 3.8E-22 128.2 10.4 152 99-285 42-195 (197)
105 2v70_A SLIT-2, SLIT homolog 2 99.7 2.7E-17 9.3E-22 128.1 12.6 154 79-262 13-168 (220)
106 3cvr_A Invasion plasmid antige 99.7 5.8E-17 2E-21 142.6 15.2 182 3-223 60-248 (571)
107 2v9t_B SLIT homolog 2 protein 99.7 7.2E-17 2.4E-21 125.8 13.8 151 54-218 14-165 (220)
108 4ezg_A Putative uncharacterize 99.7 4.2E-17 1.4E-21 124.9 12.0 154 48-219 41-195 (197)
109 2v9t_B SLIT homolog 2 protein 99.7 4.7E-17 1.6E-21 126.8 12.2 153 79-261 13-166 (220)
110 3e6j_A Variable lymphocyte rec 99.7 7.6E-17 2.6E-21 126.4 13.2 154 78-262 20-174 (229)
111 2xot_A Amphoterin-induced prot 99.7 7.5E-17 2.6E-21 135.1 13.5 174 29-218 21-202 (361)
112 2xot_A Amphoterin-induced prot 99.7 3.5E-17 1.2E-21 137.1 11.4 176 54-261 21-203 (361)
113 2v70_A SLIT-2, SLIT homolog 2 99.7 1.6E-16 5.6E-21 123.7 14.4 153 54-220 14-168 (220)
114 3e6j_A Variable lymphocyte rec 99.7 4.5E-16 1.5E-20 122.0 14.4 154 52-220 20-174 (229)
115 1xeu_A Internalin C; cellular 99.7 2.2E-16 7.6E-21 126.4 10.0 168 25-219 18-186 (263)
116 1xeu_A Internalin C; cellular 99.7 1.2E-16 4E-21 128.0 7.7 166 4-196 21-187 (263)
117 3sb4_A Hypothetical leucine ri 99.7 7.4E-16 2.5E-20 127.5 12.0 239 1-278 48-328 (329)
118 4b8c_D Glucose-repressible alc 99.7 5.5E-17 1.9E-21 147.4 5.3 134 94-240 217-359 (727)
119 2ell_A Acidic leucine-rich nuc 99.6 5E-16 1.7E-20 115.8 7.4 136 125-288 23-163 (168)
120 1dce_A Protein (RAB geranylger 99.6 1.1E-17 3.7E-22 147.7 -3.1 195 48-278 346-567 (567)
121 1dce_A Protein (RAB geranylger 99.6 1.1E-17 3.8E-22 147.7 -3.4 96 79-182 443-540 (567)
122 2ell_A Acidic leucine-rich nuc 99.6 2.4E-15 8E-20 112.1 9.4 131 25-162 23-158 (168)
123 1w8a_A SLIT protein; signaling 99.6 6.9E-15 2.4E-19 112.0 11.4 129 104-262 11-141 (192)
124 2je0_A Acidic leucine-rich nuc 99.6 5.2E-15 1.8E-19 108.0 9.9 107 48-159 39-148 (149)
125 4b8c_D Glucose-repressible alc 99.6 6.5E-16 2.2E-20 140.4 4.0 140 119-288 217-358 (727)
126 4fdw_A Leucine rich hypothetic 99.6 3.6E-13 1.2E-17 114.0 19.6 254 3-282 114-381 (401)
127 1w8a_A SLIT protein; signaling 99.6 4E-14 1.4E-18 107.8 11.7 130 29-166 11-140 (192)
128 2je0_A Acidic leucine-rich nuc 99.5 3.1E-14 1.1E-18 103.8 10.1 126 50-182 16-147 (149)
129 4fdw_A Leucine rich hypothetic 99.5 1E-12 3.5E-17 111.2 20.7 235 24-284 111-358 (401)
130 2o6r_A Variable lymphocyte rec 99.5 5.5E-14 1.9E-18 105.6 10.5 131 103-263 9-140 (177)
131 3sb4_A Hypothetical leucine ri 99.5 3.1E-14 1.1E-18 117.7 9.3 246 25-284 24-310 (329)
132 2wfh_A SLIT homolog 2 protein 99.5 5.5E-13 1.9E-17 101.5 13.5 126 80-218 13-139 (193)
133 2o6r_A Variable lymphocyte rec 99.5 4E-13 1.4E-17 100.9 12.4 130 79-220 9-139 (177)
134 2wfh_A SLIT homolog 2 protein 99.5 5.8E-13 2E-17 101.3 13.1 125 29-162 13-137 (193)
135 1a9n_A U2A', U2A'; complex (nu 99.5 8.4E-14 2.9E-18 104.5 8.1 130 22-162 15-151 (176)
136 1a9n_A U2A', U2A'; complex (nu 99.4 5.1E-13 1.7E-17 100.2 9.8 130 1-139 18-153 (176)
137 1ds9_A Outer arm dynein; leuci 99.4 2.3E-15 7.8E-20 115.3 -3.8 133 119-284 41-185 (198)
138 1ds9_A Outer arm dynein; leuci 99.4 1.7E-15 5.9E-20 116.0 -5.0 128 4-139 20-153 (198)
139 3un9_A NLR family member X1; l 99.3 1.8E-14 6E-19 120.8 -4.9 186 76-283 71-282 (372)
140 3g39_A Variable lymphocyte rec 99.3 9.9E-12 3.4E-16 92.5 10.1 105 128-261 11-116 (170)
141 3un9_A NLR family member X1; l 99.3 1.1E-13 3.8E-18 116.0 -0.9 110 51-162 101-222 (372)
142 2r9u_A Variable lymphocyte rec 99.3 1.5E-11 5.1E-16 91.9 10.2 105 128-261 14-119 (174)
143 3g39_A Variable lymphocyte rec 99.2 4.8E-11 1.6E-15 88.8 9.6 103 53-162 11-113 (170)
144 2r9u_A Variable lymphocyte rec 99.2 9.1E-11 3.1E-15 87.6 9.7 102 54-162 15-116 (174)
145 4fs7_A Uncharacterized protein 99.2 6.8E-10 2.3E-14 93.9 15.2 260 1-281 70-376 (394)
146 4gt6_A Cell surface protein; l 99.1 4.3E-09 1.5E-13 89.0 18.9 101 4-110 66-169 (394)
147 4fs7_A Uncharacterized protein 99.1 4.5E-09 1.5E-13 88.9 17.7 251 14-281 59-353 (394)
148 2ifg_A High affinity nerve gro 99.0 1.5E-09 5E-14 90.2 9.8 103 130-261 12-117 (347)
149 4gt6_A Cell surface protein; l 99.0 1.9E-08 6.6E-13 85.0 15.8 255 1-281 86-388 (394)
150 2ra8_A Uncharacterized protein 98.9 2.9E-10 9.8E-15 94.6 2.3 39 243-282 303-341 (362)
151 2ifg_A High affinity nerve gro 98.9 5.9E-09 2E-13 86.6 9.6 104 80-194 11-116 (347)
152 2ra8_A Uncharacterized protein 98.8 8.1E-09 2.8E-13 85.9 7.1 37 125-162 251-290 (362)
153 4h09_A Hypothetical leucine ri 98.8 1.6E-06 5.3E-11 72.8 19.8 53 3-59 47-99 (379)
154 1io0_A Tropomodulin; LRR prote 98.6 3.5E-08 1.2E-12 74.2 4.3 115 47-162 32-162 (185)
155 1io0_A Tropomodulin; LRR prote 98.6 3.9E-08 1.3E-12 73.9 4.3 117 22-138 32-163 (185)
156 4h09_A Hypothetical leucine ri 98.4 4.2E-05 1.5E-09 64.0 20.1 83 196-281 254-343 (379)
157 3e4g_A ATP synthase subunit S, 98.4 1.2E-07 4.2E-12 69.8 3.0 89 25-115 60-154 (176)
158 3e4g_A ATP synthase subunit S, 98.3 7.2E-07 2.5E-11 65.7 4.3 83 78-162 62-150 (176)
159 3rw6_A Nuclear RNA export fact 98.2 9.6E-07 3.3E-11 69.9 4.6 81 99-181 168-257 (267)
160 3rw6_A Nuclear RNA export fact 98.1 2.3E-06 8E-11 67.7 4.9 84 23-108 167-258 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.5 0.00013 4.4E-09 54.7 5.3 114 48-162 38-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00025 8.7E-09 53.1 5.0 118 22-139 37-170 (197)
163 3rfe_A Platelet glycoprotein I 95.9 0.008 2.7E-07 41.8 4.0 51 209-260 12-68 (130)
164 3rfe_A Platelet glycoprotein I 95.2 0.045 1.5E-06 37.9 5.9 36 78-113 32-67 (130)
165 2lz0_A Uncharacterized protein 72.8 3 0.0001 27.1 3.0 44 237-281 10-53 (100)
166 2lz0_A Uncharacterized protein 69.5 7 0.00024 25.3 4.2 47 13-61 7-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2e-35 Score=270.81 Aligned_cols=279 Identities=24% Similarity=0.304 Sum_probs=173.9
Q ss_pred CCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCcccccc-chhhHhhhcCCCccE
Q 040144 3 NLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIA-FDWLMVANKLLSLVE 81 (289)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~ 81 (289)
+|++|++.+|.+++..|..+.++++|++|++++|.+....+.. +.++++|++|++++|.+... +. .+..+++|++
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~---~~~~l~~L~~ 470 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQ---ELMYVKTLET 470 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCCSCCCG---GGGGCTTCCE
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH-HhcCCCCCEEECCCCcccCcCCH---HHcCCCCceE
Confidence 3444444444444444444555555555555554433222211 34445555555555544432 22 3444555555
Q ss_pred EEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCC
Q 040144 82 LRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLN 161 (289)
Q Consensus 82 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 161 (289)
|++++|.+....+..+..+++|+.|++++|.++ +.+|..++.+++|++|++++|.+.+.+ |..++.+++|+.+++++|
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT-GEIPKWIGRLENLAILKLSNNSFSGNI-PAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEECCSSCCEEEC-CGGGGGCTTCCEEECCSS
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCCccC-CcCChHHhcCCCCCEEECCCCcccCcC-CHHHcCCCCCCEEECCCC
Confidence 555555555444445555555555555555554 444445555555555555555555444 445555555555555555
Q ss_pred CcccCCCCcccc-ccCcceeeccc----------------------------------------cccccCCccccccccc
Q 040144 162 TGLTGRIPRSMA-LCNLKSINLQE----------------------------------------SLDMRSSSIYGHLTDQ 200 (289)
Q Consensus 162 ~~~~~~~~~~~~-~~~L~~L~l~~----------------------------------------~l~l~~~~~~~~~~~~ 200 (289)
. +.+.+|..+. ...+..+.+.. .+++..+.+.+.+|..
T Consensus 549 ~-l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~ 627 (768)
T 3rgz_A 549 L-FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627 (768)
T ss_dssp E-EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred c-cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchh
Confidence 5 4444444433 22222111100 1122334455556667
Q ss_pred ccCCCCCcEEEccCCeeeecCCCce-------EEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCccccccc
Q 040144 201 LGQFRNLVTFNLVNNSIVGFIPWSF-------ELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQL 273 (289)
Q Consensus 201 l~~~~~L~~L~l~~n~~~~~~~~~~-------~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L 273 (289)
++.+++|+.|++++|.+++.+|..+ .|++++|.++|.+|. .++++++|+.|++++|++++.+|..+..+++|
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~-~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L 706 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD-EVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCEECCCGGGGGCCCC
T ss_pred hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh-HHhCCCCCCEEECCCCcccCcCChHHhCCCCC
Confidence 7788999999999999999988777 899999999999999 99999999999999999999999999999999
Q ss_pred cEEecccccCccCCCC
Q 040144 274 VALGLHSCYIGSRFPL 289 (289)
Q Consensus 274 ~~l~l~~n~~~~~~p~ 289 (289)
++|++++|+++|.||+
T Consensus 707 ~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 707 TEIDLSNNNLSGPIPE 722 (768)
T ss_dssp SEEECCSSEEEEECCS
T ss_pred CEEECcCCcccccCCC
Confidence 9999999999999984
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.8e-35 Score=268.93 Aligned_cols=227 Identities=27% Similarity=0.303 Sum_probs=200.0
Q ss_pred CCcccEEeccCcccccc-chhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCC
Q 040144 50 ISLLEHLDLRYVNLSIA-FDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHL 128 (289)
Q Consensus 50 l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 128 (289)
++.|++|++++|.+... +. .+..+++|++|++++|.+....+..+..+++|+.|++++|.++ +..+..+..+++|
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L 468 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPP---TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE-GEIPQELMYVKTL 468 (768)
T ss_dssp TCCCCEEECCSSEEEEECCG---GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTC
T ss_pred cCCccEEECCCCccccccCH---HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc-CcCCHHHcCCCCc
Confidence 56677778877777654 33 6778899999999999988888888889999999999999987 6778888889999
Q ss_pred CEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCC
Q 040144 129 PFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNL 207 (289)
Q Consensus 129 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L 207 (289)
++|++++|.+.+.+ |..++.+++|++|++++|. +.+..|.++. +++|+.|++ ++|.+.+.+|..++.+++|
T Consensus 469 ~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L------~~N~l~~~~p~~l~~l~~L 540 (768)
T 3rgz_A 469 ETLILDFNDLTGEI-PSGLSNCTNLNWISLSNNR-LTGEIPKWIGRLENLAILKL------SNNSFSGNIPAELGDCRSL 540 (768)
T ss_dssp CEEECCSSCCCSCC-CGGGGGCTTCCEEECCSSC-CCSCCCGGGGGCTTCCEEEC------CSSCCEEECCGGGGGCTTC
T ss_pred eEEEecCCcccCcC-CHHHhcCCCCCEEEccCCc-cCCcCChHHhcCCCCCEEEC------CCCcccCcCCHHHcCCCCC
Confidence 99999999998777 7889999999999999999 8888898888 999998886 8999999999999999999
Q ss_pred cEEEccCCeeeecCCCce--------------------------------------------------------------
Q 040144 208 VTFNLVNNSIVGFIPWSF-------------------------------------------------------------- 225 (289)
Q Consensus 208 ~~L~l~~n~~~~~~~~~~-------------------------------------------------------------- 225 (289)
+.|++++|.+.+.+|..+
T Consensus 541 ~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 620 (768)
T 3rgz_A 541 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620 (768)
T ss_dssp CEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEE
T ss_pred CEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccccee
Confidence 999999999987655311
Q ss_pred ---------------EEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCccccccccEEecccccCccCCCC
Q 040144 226 ---------------ELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIGSRFPL 289 (289)
Q Consensus 226 ---------------~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~ 289 (289)
.|++++|.++|.+|. .++++++|+.|++++|++++.+|..++.+++|+.||+++|++++.+|+
T Consensus 621 ~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPK-EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp EEECCCSCSSSBCCCEEECCSSCCBSCCCG-GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred cccCchhhhccccccEEECcCCcccccCCH-HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence 689999999999999 899999999999999999999999999999999999999999999984
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=6.9e-33 Score=239.95 Aligned_cols=274 Identities=23% Similarity=0.245 Sum_probs=173.3
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCcccccc-chhhHhhhcCCCcc
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIA-FDWLMVANKLLSLV 80 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~ 80 (289)
+++++|++++|.+++..|..|.++++|++|++++|.+........+.++++|++|++++|.+... +. .+..+++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~ 106 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG---AFNGLANLE 106 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT---TTTTCTTCC
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh---hccCcccCC
Confidence 56889999999988877888889999999999888764332223367788889999988887765 33 677788888
Q ss_pred EEEccCCccCCCCcc--cccCCCCCcEEeccCCCCCCcchhhH-hhcCCCCCEEEccCceeeeeeChhhhcCC-------
Q 040144 81 ELRLSNCQLQHFSPL--ATVNFSSLTMLDLSHNQFDNSFILSW-VFALSHLPFLDLGFNNFQGTIDLEALGNL------- 150 (289)
Q Consensus 81 ~L~l~~~~l~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~------- 150 (289)
+|++++|.+....+. .+..+++|++|++++|.++ ...+.. +..+++|++|++++|.+.+.. +..+..+
T Consensus 107 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVLDLTFNKVKSIC-EEDLLNFQGKHFTL 184 (455)
T ss_dssp EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCC-SCCCCGGGGGCTTCCEEECTTCCBSCCC-TTTSGGGTTCEEEE
T ss_pred EEeCCCCCCCccccCcccccCcccCCEEECCCCccC-ccCcccccCCCCcccEEeCCCCcccccC-hhhhhccccccccc
Confidence 888888887763332 3677888888888888886 433433 667888888888888776433 3333322
Q ss_pred ---------------------------CCccEEeCCCCCcccCC------------------------------------
Q 040144 151 ---------------------------TSINRLDLSLNTGLTGR------------------------------------ 167 (289)
Q Consensus 151 ---------------------------~~L~~L~l~~n~~~~~~------------------------------------ 167 (289)
++|++|++++|. +.+.
T Consensus 185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 263 (455)
T 3v47_A 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263 (455)
T ss_dssp EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC-CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCC
T ss_pred cccccCcccccchhhccccccccccccceeeeEecCCCc-ccccchhhhhccccccceeeEeeccccccccccchhhhcc
Confidence 456666666664 3321
Q ss_pred ---------------------------CCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeee
Q 040144 168 ---------------------------IPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVG 219 (289)
Q Consensus 168 ---------------------------~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 219 (289)
.|..+. +++|+.|++ ++|.+.+..+..++.+++|+.|++++|.+++
T Consensus 264 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L------s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 337 (455)
T 3v47_A 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL------AQNEINKIDDNAFWGLTHLLKLNLSQNFLGS 337 (455)
T ss_dssp CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEEC------TTSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CcccccccccccCceEEEecCccccccchhhcccCCCCCEEEC------CCCcccccChhHhcCcccCCEEECCCCccCC
Confidence 222233 333333332 5555555555555555566666666555554
Q ss_pred cCCCce-------EEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCccccccccEEecccccCccCCC
Q 040144 220 FIPWSF-------ELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIGSRFP 288 (289)
Q Consensus 220 ~~~~~~-------~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p 288 (289)
..|..+ .|++++|.+++..+. .+.++++|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus 338 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 338 IDSRMFENLDKLEVLDLSYNHIRALGDQ-SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ECGGGGTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cChhHhcCcccCCEEECCCCcccccChh-hccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 433322 566666666543344 55666666666666666665444445566666666666666655544
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.5e-32 Score=234.46 Aligned_cols=276 Identities=22% Similarity=0.197 Sum_probs=192.0
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
+++++|+|++|.+++..+..|.++++|++|++++|.+....+.. +.++++|++|++++|.+...+. ..+..+++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~ 108 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA-FNNLFNLRTLGLRSNRLKLIPL--GVFTGLSNLTK 108 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCSCCT--TSSTTCTTCCE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhh-hhCCccCCEEECCCCcCCccCc--ccccCCCCCCE
Confidence 35677777777777666677777777777777777665554333 5667777777777777666532 13556677777
Q ss_pred EEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCC
Q 040144 82 LRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLN 161 (289)
Q Consensus 82 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 161 (289)
|++++|.+....+..+..+++|+.|++++|.++ ...+..+..+++|++|++++|.+. .+++..+..+++|+.|++++|
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-EECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESC
T ss_pred EECCCCccccCChhHccccccCCEEECCCCccc-eeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCC
Confidence 777777776666666667777777777777665 444445566667777777777666 332455666677777777666
Q ss_pred CcccCCCCcccc-ccCcceeeccc------------------cccccCCcccccccccccCCCCCcEEEccCCeeeecCC
Q 040144 162 TGLTGRIPRSMA-LCNLKSINLQE------------------SLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIP 222 (289)
Q Consensus 162 ~~~~~~~~~~~~-~~~L~~L~l~~------------------~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 222 (289)
. +....+..+. +++|+.|++++ .+++++|.++...+..+..+++|+.|++++|.+++..+
T Consensus 187 ~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 265 (477)
T 2id5_A 187 N-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG 265 (477)
T ss_dssp C-CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECT
T ss_pred c-CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccCh
Confidence 6 4444444455 66666665543 34457787876665678888899999999988876554
Q ss_pred Cce-------EEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCccccccccEEecccccCc
Q 040144 223 WSF-------ELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIG 284 (289)
Q Consensus 223 ~~~-------~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~ 284 (289)
..+ .|++++|.+++..+. .+.++++|+.|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 266 SMLHELLRLQEIQLVGGQLAVVEPY-AFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp TSCTTCTTCCEEECCSSCCSEECTT-TBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred hhccccccCCEEECCCCccceECHH-HhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 433 888999988865566 8888899999999999888766566788888999999988775
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=2.7e-31 Score=218.74 Aligned_cols=250 Identities=23% Similarity=0.212 Sum_probs=180.0
Q ss_pred CCCcEEEccCCcccc--cCCCccCCCCCCcEEeCCC-ccccccCCCcccCCCCcccEEeccCcccccc-chhhHhhhcCC
Q 040144 2 GNLRYLNFSKTRICG--IIPQQLGNLSNLQFLDLSS-KYLLYVDNFLWLSGISLLEHLDLRYVNLSIA-FDWLMVANKLL 77 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~ 77 (289)
.++++|+++++.+++ .+|..+.++++|++|++++ |.+....+.. +.++++|++|++++|.+... +. .+..++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~---~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPD---FLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCG---GGGGCT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCH---HHhCCC
Confidence 357777777777776 6777777777777777774 4444332222 56677777777777777643 33 566777
Q ss_pred CccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCC-CCCEEEccCceeeeeeChhhhcCCCCccEE
Q 040144 78 SLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALS-HLPFLDLGFNNFQGTIDLEALGNLTSINRL 156 (289)
Q Consensus 78 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 156 (289)
+|++|++++|.+....+..+..+++|++|++++|.++ +.++..+..+. +|++|++++|.+.+.. +..+..++ |++|
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~~L~~L~L~~N~l~~~~-~~~~~~l~-L~~L 202 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS-GAIPDSYGSFSKLFTSMTISRNRLTGKI-PPTFANLN-LAFV 202 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE-EECCGGGGCCCTTCCEEECCSSEEEEEC-CGGGGGCC-CSEE
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCccc-CcCCHHHhhhhhcCcEEECcCCeeeccC-ChHHhCCc-ccEE
Confidence 7777777777777666667777777777777777775 45666666666 7777777777777655 66666665 7777
Q ss_pred eCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCceEEEeecceee
Q 040144 157 DLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLN 235 (289)
Q Consensus 157 ~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~ 235 (289)
++++|. +.+..|..+. +++|+.|++ ++|.+++.++. +..+++|+.|++++|.++
T Consensus 203 ~Ls~N~-l~~~~~~~~~~l~~L~~L~L------~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~----------------- 257 (313)
T 1ogq_A 203 DLSRNM-LEGDASVLFGSDKNTQKIHL------AKNSLAFDLGK-VGLSKNLNGLDLRNNRIY----------------- 257 (313)
T ss_dssp ECCSSE-EEECCGGGCCTTSCCSEEEC------CSSEECCBGGG-CCCCTTCCEEECCSSCCE-----------------
T ss_pred ECcCCc-ccCcCCHHHhcCCCCCEEEC------CCCceeeecCc-ccccCCCCEEECcCCccc-----------------
Confidence 777777 6656666666 777777665 66777655554 566677777777766665
Q ss_pred eeeccccccccccccEEEecCCeeeeccCCCccccccccEEeccccc-Ccc
Q 040144 236 VTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCY-IGS 285 (289)
Q Consensus 236 ~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~-~~~ 285 (289)
+.+|. .+.++++|++|++++|++++.+|.. ..+++|+.+++++|+ +.+
T Consensus 258 ~~~p~-~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 258 GTLPQ-GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp ECCCG-GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred CcCCh-HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 45666 7889999999999999999888876 889999999999997 554
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.98 E-value=3.4e-31 Score=230.69 Aligned_cols=265 Identities=19% Similarity=0.186 Sum_probs=200.8
Q ss_pred cEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEc
Q 040144 5 RYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRL 84 (289)
Q Consensus 5 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 84 (289)
+.++..++.++ .+|..+ .+++++|++++|.+....... +.++++|++|++++|.+....+ ..+..+++|++|++
T Consensus 14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~--~~~~~l~~L~~L~L 87 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDE-FASFPHLEELELNENIVSAVEP--GAFNNLFNLRTLGL 87 (477)
T ss_dssp TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTT-TTTCTTCCEEECTTSCCCEECT--TTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhH-ccCCCCCCEEECCCCccCEeCh--hhhhCCccCCEEEC
Confidence 46677777776 466544 358999999999887765443 7889999999999999887622 27889999999999
Q ss_pred cCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcc
Q 040144 85 SNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGL 164 (289)
Q Consensus 85 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 164 (289)
++|.+....+..+..+++|+.|++++|.++ ...+..+..+++|++|++++|.+.+.. +..+..+++|++|++++|. +
T Consensus 88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~-l 164 (477)
T 2id5_A 88 RSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYIS-HRAFSGLNSLEQLTLEKCN-L 164 (477)
T ss_dssp CSSCCCSCCTTSSTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEECCTTCCEEC-TTSSTTCTTCCEEEEESCC-C
T ss_pred CCCcCCccCcccccCCCCCCEEECCCCccc-cCChhHccccccCCEEECCCCccceeC-hhhccCCCCCCEEECCCCc-C
Confidence 999999887778899999999999999997 556667888999999999999998544 7789999999999999998 6
Q ss_pred cCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCC--------------------
Q 040144 165 TGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPW-------------------- 223 (289)
Q Consensus 165 ~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~-------------------- 223 (289)
.+..+..+. +++|+.|++ ++|.+.+..+..+..+++|+.|++++|...+.+|.
T Consensus 165 ~~~~~~~l~~l~~L~~L~l------~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 238 (477)
T 2id5_A 165 TSIPTEALSHLHGLIVLRL------RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238 (477)
T ss_dssp SSCCHHHHTTCTTCCEEEE------ESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS
T ss_pred cccChhHhcccCCCcEEeC------CCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc
Confidence 654445567 899999987 66666665555666666666666655543322221
Q ss_pred -----------ceEEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCccccccccEEecccccCcc
Q 040144 224 -----------SFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIGS 285 (289)
Q Consensus 224 -----------~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 285 (289)
...|++++|.+++..+. .+.++++|+.|++++|++.+..+..+..+++|+.|++++|++++
T Consensus 239 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 239 VPYLAVRHLVYLRFLNLSYNPISTIEGS-MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp CCHHHHTTCTTCCEEECCSSCCCEECTT-SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred cCHHHhcCccccCeeECCCCcCCccChh-hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce
Confidence 11667777766643333 66677777777777777777667777777778888888777763
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=3.9e-30 Score=230.32 Aligned_cols=134 Identities=20% Similarity=0.214 Sum_probs=70.6
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
++|++|++++|.+++..|.+|+++++|++|++++|.+....+.. +.++++|++|++++|.+....+ ..+..+++|++
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~l~~--~~~~~l~~L~~ 133 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA-LSGPKALKHLFFIQTGISSIDF--IPLHNQKTLES 133 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT-TSSCTTCCEEECTTSCCSCGGG--SCCTTCTTCCE
T ss_pred ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh-hcccccccEeeccccCcccCCc--chhccCCcccE
Confidence 44555555555555544555555555555555555444333222 4455555555555555554311 13455556666
Q ss_pred EEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCC--EEEccCceee
Q 040144 82 LRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLP--FLDLGFNNFQ 139 (289)
Q Consensus 82 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~--~L~l~~n~~~ 139 (289)
|++++|.+.......+..+++|+.|++++|.++ ...+..++.+++|+ .|++++|.+.
T Consensus 134 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp EECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred EECCCCcccccCcccccCCcccCEEEcccCccc-ccChhhhhhhcccceeEEecCCCccC
Confidence 666666655543333344666666666666665 33344555555555 5555555544
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=3.6e-30 Score=230.51 Aligned_cols=271 Identities=24% Similarity=0.206 Sum_probs=218.6
Q ss_pred CCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEE
Q 040144 3 NLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVEL 82 (289)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 82 (289)
.++++++.+|.+++..+..|..+++|++|++++|.+..++.. +.++++|++|++++|.+....+ ..+..+++|++|
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~--l~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L 330 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG--LVGLSTLKKLVLSANKFENLCQ--ISASNFPSLTHL 330 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSS--CCSCTTCCEEECTTCCCSBGGG--GCGGGCTTCSEE
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChh--hcccccCCEEECccCCcCcCch--hhhhccCcCCEE
Confidence 578899999999887888899999999999999987765543 6789999999999998887632 267788999999
Q ss_pred EccCCccCCC-CcccccCCCCCcEEeccCCCCCCcch--hhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCC
Q 040144 83 RLSNCQLQHF-SPLATVNFSSLTMLDLSHNQFDNSFI--LSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLS 159 (289)
Q Consensus 83 ~l~~~~l~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 159 (289)
++++|.+... .+..+..+++|++|++++|.++ ... +..+..+++|++|++++|.+.+.. +..+..+++|++|+++
T Consensus 331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIE-TSDCCNLQLRNLSHLQSLNLSYNEPLSLK-TEAFKECPQLELLDLA 408 (606)
T ss_dssp ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCC-EEEESTTTTTTCTTCCEEECCSCSCEEEC-TTTTTTCTTCSEEECT
T ss_pred ECCCCCcccccchhhhhccCcCCEEECCCCccc-cccCcchhcccCCCCCEEECCCCcCCcCC-HHHhcCCccCCeEECC
Confidence 9999987743 3445788999999999999887 333 556778899999999999888554 7788899999999999
Q ss_pred CCCcccCCCCc-ccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeec-CC--Cce-------EE
Q 040144 160 LNTGLTGRIPR-SMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGF-IP--WSF-------EL 227 (289)
Q Consensus 160 ~n~~~~~~~~~-~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~-~~--~~~-------~L 227 (289)
+|. +.+..+. .+. +++|+.|++ ++|.+.+..+..++.+++|+.|++++|.+.+. ++ ..+ .|
T Consensus 409 ~n~-l~~~~~~~~~~~l~~L~~L~l------~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L 481 (606)
T 3t6q_A 409 FTR-LKVKDAQSPFQNLHLLKVLNL------SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481 (606)
T ss_dssp TCC-EECCTTCCTTTTCTTCCEEEC------TTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEE
T ss_pred CCc-CCCcccchhhhCcccCCEEEC------CCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEE
Confidence 998 6655544 366 888988886 78888888888888889999999999988652 11 112 88
Q ss_pred EeecceeeeeeccccccccccccEEEecCCeeeeccCCCccccccccEEecccccCccCCC
Q 040144 228 HIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIGSRFP 288 (289)
Q Consensus 228 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p 288 (289)
++++|.+++..+. .+.++++|+.|++++|++++..|..+..+++| .|++++|++++..|
T Consensus 482 ~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 482 VLSFCDLSSIDQH-AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540 (606)
T ss_dssp ECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred ECCCCccCccChh-hhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCH
Confidence 8999888865566 78888899999999998888888888888888 88888888875544
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=6.1e-30 Score=229.04 Aligned_cols=131 Identities=21% Similarity=0.253 Sum_probs=60.6
Q ss_pred CCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCcccccc-chhhHhhhcCCCccE
Q 040144 3 NLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIA-FDWLMVANKLLSLVE 81 (289)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~ 81 (289)
.+++|++++|.+++..+..|.++++|++|++++|.+....+.. +.++++|++|++++|.+... +. .+..+++|++
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~-~~~l~~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~ 108 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA-WHGLHHLSNLILTGNPIQSFSPG---SFSGLTSLEN 108 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCCCCCTT---SSTTCTTCCE
T ss_pred CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHH-hhchhhcCEeECCCCcccccChh---hcCCcccCCE
Confidence 3455555555555444445555555555555555444333222 34455555555555544443 22 3444455555
Q ss_pred EEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCce
Q 040144 82 LRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNN 137 (289)
Q Consensus 82 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 137 (289)
|++++|.+....+..++.+++|++|++++|.++...+|..++.+++|++|++++|.
T Consensus 109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp EECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred EEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 55555544444333444444444444444444311233444444444444444443
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1.8e-30 Score=233.19 Aligned_cols=273 Identities=17% Similarity=0.201 Sum_probs=199.0
Q ss_pred CCCCcEEEccCCccccc-----------------CCCccC--CCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCc
Q 040144 1 MGNLRYLNFSKTRICGI-----------------IPQQLG--NLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYV 61 (289)
Q Consensus 1 ~~~L~~L~l~~~~~~~~-----------------~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 61 (289)
+++|++|+|++|.+++. +|..++ ++++|++|++++|.+....+.. +.++++|++|++++|
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACN 283 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTC
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCC
Confidence 57899999999999985 899999 9999999999998765544333 788999999999999
Q ss_pred c-ccc--cchhhHhhhc------CCCccEEEccCCccCCCCcc--cccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCE
Q 040144 62 N-LSI--AFDWLMVANK------LLSLVELRLSNCQLQHFSPL--ATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPF 130 (289)
Q Consensus 62 ~-~~~--~~~~~~~~~~------~~~L~~L~l~~~~l~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 130 (289)
. +.. .+. .+.. +++|++|++++|.++ ..|. .++.+++|+.|++++|.++ +.++ .++.+++|++
T Consensus 284 ~~l~~~~lp~---~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~-g~ip-~~~~l~~L~~ 357 (636)
T 4eco_A 284 RGISGEQLKD---DWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLE-GKLP-AFGSEIKLAS 357 (636)
T ss_dssp TTSCHHHHHH---HHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCE-EECC-CCEEEEEESE
T ss_pred CCCccccchH---HHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCc-cchh-hhCCCCCCCE
Confidence 8 765 233 4444 489999999999999 4466 7899999999999999996 5677 7778899999
Q ss_pred EEccCceeeeeeChhhhcCCCC-ccEEeCCCCCcccCCCCcccc-cc--Ccceeeccc----------------------
Q 040144 131 LDLGFNNFQGTIDLEALGNLTS-INRLDLSLNTGLTGRIPRSMA-LC--NLKSINLQE---------------------- 184 (289)
Q Consensus 131 L~l~~n~~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~-~~--~L~~L~l~~---------------------- 184 (289)
|++++|.+. .+ |..+..+++ |++|++++|. +. .+|..+. .. +|+.|+++.
T Consensus 358 L~L~~N~l~-~l-p~~l~~l~~~L~~L~Ls~N~-l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 358 LNLAYNQIT-EI-PANFCGFTEQVENLSFAHNK-LK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433 (636)
T ss_dssp EECCSSEEE-EC-CTTSEEECTTCCEEECCSSC-CS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred EECCCCccc-cc-cHhhhhhcccCcEEEccCCc-Cc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence 999999998 67 777888988 9999999998 66 6777666 33 677776622
Q ss_pred ---cccccCCcccccccccccCCCCCcEEEccCCeeeecCCC--------------ce-EEEeecceeeeeecccccc--
Q 040144 185 ---SLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPW--------------SF-ELHIYDNKLNVTLFELHFA-- 244 (289)
Q Consensus 185 ---~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~--------------~~-~L~l~~n~~~~~~~~~~~~-- 244 (289)
.+++++|.++...+..+..+++|+.|++++|.++ .+|. .+ .|++++|.++ .+|. .+.
T Consensus 434 ~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~~ 510 (636)
T 4eco_A 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSD-DFRAT 510 (636)
T ss_dssp CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCG-GGSTT
T ss_pred CCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccCh-hhhhc
Confidence 2233444444322333344556666666666555 2222 11 5666666666 5665 444
Q ss_pred ccccccEEEecCCeeeeccCCCccccccccEEec------ccccCccCCC
Q 040144 245 NLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGL------HSCYIGSRFP 288 (289)
Q Consensus 245 ~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l------~~n~~~~~~p 288 (289)
.+++|+.|++++|++++ +|..+..+++|+.|++ ++|++.+.+|
T Consensus 511 ~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp TCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred cCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence 66777777777777765 6666667777777777 3455555555
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=4.3e-31 Score=237.16 Aligned_cols=274 Identities=16% Similarity=0.247 Sum_probs=190.1
Q ss_pred CCcEEEccCCcccccCCCccCCCCCCcEEeCCCcccc------c------------------------------------
Q 040144 3 NLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLL------Y------------------------------------ 40 (289)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~------~------------------------------------ 40 (289)
+++.|+|+++.+.|.+|++++++++|++|++++|... .
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~ 161 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDL 161 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHH
Confidence 6789999999999999999999999999999988430 0
Q ss_pred ---------------------------------c-CCCcccCCCCcccEEeccCccccc------------------cch
Q 040144 41 ---------------------------------V-DNFLWLSGISLLEHLDLRYVNLSI------------------AFD 68 (289)
Q Consensus 41 ---------------------------------~-~~~~~~~~l~~L~~L~l~~~~~~~------------------~~~ 68 (289)
. +.+..+.++++|++|++++|.+.. .+.
T Consensus 162 ~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~ 241 (636)
T 4eco_A 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE 241 (636)
T ss_dssp HHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS
T ss_pred HHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch
Confidence 0 011226778999999999999887 443
Q ss_pred hhHhhh--cCCCccEEEccCCccCCCCcccccCCCCCcEEeccCCC-CCCc-chhhHhhcC------CCCCEEEccCcee
Q 040144 69 WLMVAN--KLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQ-FDNS-FILSWVFAL------SHLPFLDLGFNNF 138 (289)
Q Consensus 69 ~~~~~~--~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~------~~L~~L~l~~n~~ 138 (289)
.+. ++++|++|++++|.+....|..++.+++|+.|++++|. ++ + .+|..++.+ ++|++|++++|.+
T Consensus 242 ---~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~-~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 242 ---DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS-GEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp ---CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSC-HHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred ---hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCc-cccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 666 89999999999999888888889999999999999998 76 5 677777665 8899999999988
Q ss_pred eeeeChh--hhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccc------------------cccccCCcccccc
Q 040144 139 QGTIDLE--ALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQE------------------SLDMRSSSIYGHL 197 (289)
Q Consensus 139 ~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~------------------~l~l~~~~~~~~~ 197 (289)
+ .+ |. .++.+++|++|++++|. +.+.+| .+. +++|+.|++++ .+++++|.++ .+
T Consensus 318 ~-~i-p~~~~l~~l~~L~~L~L~~N~-l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~l 392 (636)
T 4eco_A 318 K-TF-PVETSLQKMKKLGMLECLYNQ-LEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YI 392 (636)
T ss_dssp S-SC-CCHHHHTTCTTCCEEECCSCC-CEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SC
T ss_pred C-cc-CchhhhccCCCCCEEeCcCCc-Cccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-cc
Confidence 8 66 66 78888999999999888 766777 666 77777777632 2233444444 33
Q ss_pred cccccCCC--CCcEEEccCCeeeecCCCc--------------eEEEeecceeeeeeccccccccccccEEEecCCeeee
Q 040144 198 TDQLGQFR--NLVTFNLVNNSIVGFIPWS--------------FELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTL 261 (289)
Q Consensus 198 ~~~l~~~~--~L~~L~l~~n~~~~~~~~~--------------~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 261 (289)
|..+...+ +|+.|++++|.+.+..|.. ..|++++|.++ .+|...+..+++|+.|++++|+++
T Consensus 393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~- 470 (636)
T 4eco_A 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT- 470 (636)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-
T ss_pred chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-
Confidence 44443322 4555555555554432211 15566666555 444423344566666666666666
Q ss_pred ccCCCcccc--------ccccEEecccccCccCCC
Q 040144 262 EVKHDWIPH--------FQLVALGLHSCYIGSRFP 288 (289)
Q Consensus 262 ~~~~~~~~~--------~~L~~l~l~~n~~~~~~p 288 (289)
.+|..+... ++|+.|++++|+++ .+|
T Consensus 471 ~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 504 (636)
T 4eco_A 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLS 504 (636)
T ss_dssp BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCC
T ss_pred CcCHHHhccccccccccCCccEEECcCCcCC-ccC
Confidence 344432221 26666666666665 444
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=1.4e-29 Score=219.28 Aligned_cols=270 Identities=20% Similarity=0.259 Sum_probs=215.1
Q ss_pred EEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEcc
Q 040144 6 YLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLS 85 (289)
Q Consensus 6 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 85 (289)
.++..++.++ .+|. + .++|++|++++|.+....+.. +.++++|++|++++|.+..... ...+..+++|++|+++
T Consensus 14 ~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~~~~~i~-~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 14 NAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETS-FSRLQDLQFLKVEQQTPGLVIR-NNTFRGLSSLIILKLD 87 (455)
T ss_dssp EEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTT-TSSCTTCCEEECCCCSTTCEEC-TTTTTTCTTCCEEECT
T ss_pred ccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhH-hccCccccEEECcCCcccceEC-cccccccccCCEEeCC
Confidence 4555666665 3554 2 278999999999887665443 7889999999999998764311 1267889999999999
Q ss_pred CCccCCCCcccccCCCCCcEEeccCCCCCCcchhhH--hhcCCCCCEEEccCceeeeeeChhh-hcCCCCccEEeCCCCC
Q 040144 86 NCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSW--VFALSHLPFLDLGFNNFQGTIDLEA-LGNLTSINRLDLSLNT 162 (289)
Q Consensus 86 ~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~~~L~~L~l~~n~ 162 (289)
+|.+....+..++.+++|++|++++|.++ ...+.. +..+++|++|++++|.+.+.. +.. +..+++|++|++++|.
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLD-GAVLSGNFFKPLTSLEMLVLRDNNIKKIQ-PASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCB-THHHHSSTTTTCTTCCEEECCSSBCCSCC-CCGGGGGCTTCCEEECTTCC
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCC-ccccCcccccCcccCCEEECCCCccCccC-cccccCCCCcccEEeCCCCc
Confidence 99999888888999999999999999997 434443 778999999999999998554 444 8899999999999998
Q ss_pred cccCCCCcccc-c----------------------------------cCcceeeccc-----------------------
Q 040144 163 GLTGRIPRSMA-L----------------------------------CNLKSINLQE----------------------- 184 (289)
Q Consensus 163 ~~~~~~~~~~~-~----------------------------------~~L~~L~l~~----------------------- 184 (289)
+.+..+..+. + ++|++|++++
T Consensus 166 -l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L 244 (455)
T 3v47_A 166 -VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244 (455)
T ss_dssp -BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEE
T ss_pred -ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeE
Confidence 6655554443 2 4566665543
Q ss_pred ----------------------------------cccccCCcccccccccccCCCCCcEEEccCCeeeecCCCce-----
Q 040144 185 ----------------------------------SLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF----- 225 (289)
Q Consensus 185 ----------------------------------~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~----- 225 (289)
.+++++|.+.+..+..++.+++|+.|++++|.+.+..|..+
T Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 324 (455)
T 3v47_A 245 ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH 324 (455)
T ss_dssp ECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred eeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCccc
Confidence 23445566666677788899999999999999987766544
Q ss_pred --EEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCccccccccEEecccccCcc
Q 040144 226 --ELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIGS 285 (289)
Q Consensus 226 --~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 285 (289)
.|++++|.+++..+. .+.++++|++|++++|++++..|..+..+++|++|++++|++++
T Consensus 325 L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 325 LLKLNLSQNFLGSIDSR-MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp CCEEECCSSCCCEECGG-GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCEEECCCCccCCcChh-HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc
Confidence 899999999865566 88999999999999999998888899999999999999999985
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=1.1e-29 Score=227.49 Aligned_cols=157 Identities=20% Similarity=0.209 Sum_probs=93.8
Q ss_pred CCCCCEEEccCceeeeee-ChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccc------------------
Q 040144 125 LSHLPFLDLGFNNFQGTI-DLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQE------------------ 184 (289)
Q Consensus 125 ~~~L~~L~l~~n~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~------------------ 184 (289)
+++|++|++++|.+.+.. .+..+..+++|++|++++|. +. ..|..+. +++|+.|++++
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence 445666666666655321 13445555555555555554 33 2333333 44444444422
Q ss_pred -cccccCCcccccccccccCCCCCcEEEccCCeeeec-CCCce-------EEEeecceeeeeeccccccccccccEEEec
Q 040144 185 -SLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGF-IPWSF-------ELHIYDNKLNVTLFELHFANLIEMSWFRVG 255 (289)
Q Consensus 185 -~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~-~~~~~-------~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~ 255 (289)
.+++++|.+.+..|..++.+++|+.|++++|.+.+. +|..+ .|++++|.+++..+. .+.++++|++|+++
T Consensus 427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG-VFDTLHRLQLLNMS 505 (606)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECC
T ss_pred CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh-hhcccccCCEEECC
Confidence 223366666666666677777777777777776652 34333 677777777654455 66777777777777
Q ss_pred CCeeeeccCCCccccccccEEecccccCc
Q 040144 256 GNQLTLEVKHDWIPHFQLVALGLHSCYIG 284 (289)
Q Consensus 256 ~n~~~~~~~~~~~~~~~L~~l~l~~n~~~ 284 (289)
+|++++..|..+..+++|+.|++++|+++
T Consensus 506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp SSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 77777666667777777777777777765
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=234.94 Aligned_cols=277 Identities=22% Similarity=0.249 Sum_probs=194.5
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCcccccc-chhhHhhhcCCCcc
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIA-FDWLMVANKLLSLV 80 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~ 80 (289)
+++++|+|++|.+++..+..|.++++|++|++++|..........+.++++|++|++++|.+... +. .+..+++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~ 100 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD---AFQGLFHLF 100 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT---SSCSCSSCC
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh---HccCCcccC
Confidence 67899999999998888889999999999999988543322223378899999999999988776 43 678889999
Q ss_pred EEEccCCccCCCCccc--ccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCC--CCccEE
Q 040144 81 ELRLSNCQLQHFSPLA--TVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNL--TSINRL 156 (289)
Q Consensus 81 ~L~l~~~~l~~~~~~~--l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~~L~~L 156 (289)
+|++++|.+....+.. +..+++|+.|++++|.++....+..++.+++|++|++++|.+.+.. +..+..+ ++|+.|
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~-~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC-EHELEPLQGKTLSFF 179 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC-SGGGHHHHHCSSCCC
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC-HHHcccccCCccceE
Confidence 9999999888754433 7888999999999998873333356788899999999998876443 4444433 444444
Q ss_pred eCCCCCcccCCCCcccc-ccC------cceeeccc---------------------------------------------
Q 040144 157 DLSLNTGLTGRIPRSMA-LCN------LKSINLQE--------------------------------------------- 184 (289)
Q Consensus 157 ~l~~n~~~~~~~~~~~~-~~~------L~~L~l~~--------------------------------------------- 184 (289)
++++|. +.+..|..+. +++ |+.|++++
T Consensus 180 ~L~~n~-l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~ 258 (844)
T 3j0a_A 180 SLAANS-LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258 (844)
T ss_dssp EECCSB-SCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred ECCCCc-cccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence 444444 3333332222 221 33332211
Q ss_pred -----------cccccCCcccccccccccCCCCCcEEEccCCeeeecCCCce-------EEEeecceeeeeecccccccc
Q 040144 185 -----------SLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF-------ELHIYDNKLNVTLFELHFANL 246 (289)
Q Consensus 185 -----------~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~-------~L~l~~n~~~~~~~~~~~~~~ 246 (289)
.+++++|.+.+..+..+..+++|+.|++++|.+.+..|..+ .|++++|.+++..+. .+.++
T Consensus 259 ~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l 337 (844)
T 3j0a_A 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS-NFYGL 337 (844)
T ss_dssp TTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC-SCSSC
T ss_pred hhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHH-HhcCC
Confidence 23346666666666777777788888888887776555443 778888877754455 77778
Q ss_pred ccccEEEecCCeeeeccCCCccccccccEEecccccCc
Q 040144 247 IEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIG 284 (289)
Q Consensus 247 ~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~ 284 (289)
++|+.|++++|++.+..+..+..+++|+.|++++|.++
T Consensus 338 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 88888888888877666666777788888888887775
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=7.8e-29 Score=220.30 Aligned_cols=134 Identities=21% Similarity=0.195 Sum_probs=94.3
Q ss_pred CCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEE
Q 040144 3 NLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVEL 82 (289)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 82 (289)
.+++|++++|.+++..+.+|.++++|++|++++|.+...+... +.++++|++|++++|.+...++ ..+..+++|++|
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L 105 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTGNPIQSLAL--GAFSGLSSLQKL 105 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCCEECT--TTTTTCTTCCEE
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccc-ccCchhCCEEeCcCCcCCccCH--hhhcCccccccc
Confidence 5778888888877766777788888888888887766554333 6677888888888887766532 256677777777
Q ss_pred EccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceee
Q 040144 83 RLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQ 139 (289)
Q Consensus 83 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 139 (289)
++++|.+....+..++.+++|++|++++|.++...+|..++.+++|++|++++|.+.
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 777777776655556777777777777777652235666677777777777776654
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=3.7e-29 Score=220.08 Aligned_cols=134 Identities=22% Similarity=0.261 Sum_probs=86.5
Q ss_pred cCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccc--------------------cccccCCcccccccc-cccCCC
Q 040144 148 GNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQE--------------------SLDMRSSSIYGHLTD-QLGQFR 205 (289)
Q Consensus 148 ~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~--------------------~l~l~~~~~~~~~~~-~l~~~~ 205 (289)
..+++|++|++++|. +.+..|..+. +++|++|++++ .+++++|.+.+.+|. .+..++
T Consensus 321 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNL-LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSC-CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCc-cChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 456678888888887 6666677777 77888777643 344455555542332 355556
Q ss_pred CCcEEEccCCeeeecCCCce-----EEEeecceeeeeeccccccccccccEEEecCCeeeeccCCC-ccccccccEEecc
Q 040144 206 NLVTFNLVNNSIVGFIPWSF-----ELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHD-WIPHFQLVALGLH 279 (289)
Q Consensus 206 ~L~~L~l~~n~~~~~~~~~~-----~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~L~~l~l~ 279 (289)
+|+.|++++|.+++..|..+ .|++++|.++ .+|. .+..+++|++|++++|++++ +|.. +..+++|+.|+++
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~-~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPK-QVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECC
T ss_pred cCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccch-hhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECc
Confidence 66666666666654433222 6777777776 6666 55577777777777777774 4443 6677777777777
Q ss_pred cccCcc
Q 040144 280 SCYIGS 285 (289)
Q Consensus 280 ~n~~~~ 285 (289)
+|+++.
T Consensus 477 ~N~~~c 482 (520)
T 2z7x_B 477 TNPWDC 482 (520)
T ss_dssp SSCBCC
T ss_pred CCCCcc
Confidence 777654
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.2e-28 Score=219.13 Aligned_cols=156 Identities=20% Similarity=0.252 Sum_probs=102.7
Q ss_pred hcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCC-cccc-ccCcceeeccccccccCCccccccccc
Q 040144 123 FALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIP-RSMA-LCNLKSINLQESLDMRSSSIYGHLTDQ 200 (289)
Q Consensus 123 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~ 200 (289)
..+++|++|++++|.+.+ + +..+..+++|++|++++|. +.+..+ ..+. +++|+.|++ ++|.+.+..+..
T Consensus 370 ~~~~~L~~L~l~~n~l~~-~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l------~~n~l~~~~~~~ 440 (570)
T 2z63_A 370 FGTTSLKYLDLSFNGVIT-M-SSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDI------SHTHTRVAFNGI 440 (570)
T ss_dssp HTCSCCCEEECCSCSEEE-E-EEEEETCTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEEC------TTSCCEECCTTT
T ss_pred cccCccCEEECCCCcccc-c-cccccccCCCCEEEccCCc-cccccchhhhhcCCCCCEEeC------cCCcccccchhh
Confidence 334444444444444432 2 1224455555555555554 333333 2333 555555554 777777777777
Q ss_pred ccCCCCCcEEEccCCeee-ecCCCce-------EEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCcccccc
Q 040144 201 LGQFRNLVTFNLVNNSIV-GFIPWSF-------ELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQ 272 (289)
Q Consensus 201 l~~~~~L~~L~l~~n~~~-~~~~~~~-------~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~ 272 (289)
+..+++|+.|++++|.+. +.+|..+ .|++++|.+++..|. .+.++++|++|++++|++++..+..+..+++
T Consensus 441 ~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 519 (570)
T 2z63_A 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLSSLQVLNMASNQLKSVPDGIFDRLTS 519 (570)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred hhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChh-hhhcccCCCEEeCCCCcCCCCCHHHhhcccC
Confidence 888888888888888876 3455444 788888888865566 7888888888888888888766667888888
Q ss_pred ccEEecccccCccCCC
Q 040144 273 LVALGLHSCYIGSRFP 288 (289)
Q Consensus 273 L~~l~l~~n~~~~~~p 288 (289)
|+.|++++|.+++..|
T Consensus 520 L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 520 LQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CCEEECCSSCBCCCTT
T ss_pred CcEEEecCCcccCCCc
Confidence 8888888888877665
No 18
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=3.2e-29 Score=222.41 Aligned_cols=107 Identities=25% Similarity=0.212 Sum_probs=66.7
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
+++++|++++|.+++..+..|.++++|++|++++|.+....+.. +.++++|++|++++|.+...+. . .+++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~---~--~l~~L~~ 125 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV-FLFNQDLEYLDVSHNRLQNISC---C--PMASLRH 125 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTT-TTTCTTCCEEECTTSCCCEECS---C--CCTTCSE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHH-hCCCCCCCEEECCCCcCCccCc---c--ccccCCE
Confidence 45677777777776655566777777777777776655544332 5666777777777776665443 2 5666666
Q ss_pred EEccCCccCCCC-cccccCCCCCcEEeccCCCCC
Q 040144 82 LRLSNCQLQHFS-PLATVNFSSLTMLDLSHNQFD 114 (289)
Q Consensus 82 L~l~~~~l~~~~-~~~l~~~~~L~~L~l~~~~~~ 114 (289)
|++++|.+.... +..++.+++|+.|++++|.++
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred EECCCCCccccCchHhhcccCcccEEecCCCccc
Confidence 666666666532 345566666666666665543
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.6e-29 Score=231.64 Aligned_cols=164 Identities=19% Similarity=0.191 Sum_probs=113.3
Q ss_pred CCCCcEEEccCCcccc-----------------cCCCccC--CCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCc
Q 040144 1 MGNLRYLNFSKTRICG-----------------IIPQQLG--NLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYV 61 (289)
Q Consensus 1 ~~~L~~L~l~~~~~~~-----------------~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 61 (289)
+++|++|+|++|.+++ .+|+.++ ++++|++|++++|.+....+. .+.++++|++|++++|
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-FLYDLPELQSLNIACN 525 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG-GGGGCSSCCEEECTTC
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH-HHhCCCCCCEEECcCC
Confidence 5688899999988887 3788877 889999999988875444332 2678888888888888
Q ss_pred c-ccc--cchhhH----hhhcCCCccEEEccCCccCCCCcc--cccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEE
Q 040144 62 N-LSI--AFDWLM----VANKLLSLVELRLSNCQLQHFSPL--ATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLD 132 (289)
Q Consensus 62 ~-~~~--~~~~~~----~~~~~~~L~~L~l~~~~l~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 132 (289)
. +.. .+.... .+..+++|++|++++|.+. ..|. .++.+++|+.|++++|.++ .+| .++.+++|+.|+
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~~L~ 601 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR--HLE-AFGTNVKLTDLK 601 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC--BCC-CCCTTSEESEEE
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc--cch-hhcCCCcceEEE
Confidence 7 654 232111 1223458888888888877 3455 6777888888888888775 445 566677777777
Q ss_pred ccCceeeeeeChhhhcCCCC-ccEEeCCCCCcccCCCCcccc
Q 040144 133 LGFNNFQGTIDLEALGNLTS-INRLDLSLNTGLTGRIPRSMA 173 (289)
Q Consensus 133 l~~n~~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~ 173 (289)
+++|.+. .+ |..+..+++ |+.|++++|. +. .+|..+.
T Consensus 602 Ls~N~l~-~l-p~~l~~l~~~L~~L~Ls~N~-L~-~lp~~~~ 639 (876)
T 4ecn_A 602 LDYNQIE-EI-PEDFCAFTDQVEGLGFSHNK-LK-YIPNIFN 639 (876)
T ss_dssp CCSSCCS-CC-CTTSCEECTTCCEEECCSSC-CC-SCCSCCC
T ss_pred CcCCccc-cc-hHHHhhccccCCEEECcCCC-CC-cCchhhh
Confidence 7777776 55 556666666 7777777776 44 4454443
No 20
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=4.6e-29 Score=211.81 Aligned_cols=262 Identities=19% Similarity=0.173 Sum_probs=151.2
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
++|++|++++|.+++..+..|..+++|++|++++|.+...++.. +.++++|++|++++|.+...+. ..+..+++|++
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~l~~--~~~~~l~~L~~ 145 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV-FQNVPLLTVLVLERNDLSSLPR--GIFHNTPKLTT 145 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCE
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHH-hcCCCCCCEEECCCCccCcCCH--HHhcCCCCCcE
Confidence 45666666666655545555666666666666665544443322 4556666666666665554432 12345566666
Q ss_pred EEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhc-------------
Q 040144 82 LRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALG------------- 148 (289)
Q Consensus 82 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~------------- 148 (289)
|++++|.+....+..+..+++|+.|++++|.++ . . .+..+++|+++++++|.+.+...+..+.
T Consensus 146 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~-~--~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~ 221 (390)
T 3o6n_A 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-H-V--DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR 221 (390)
T ss_dssp EECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-B-C--CGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEE
T ss_pred EECCCCccCccChhhccCCCCCCEEECCCCcCC-c-c--ccccccccceeecccccccccCCCCcceEEECCCCeeeecc
Confidence 666666665555555555666666666666554 1 1 1334555666666655544211011110
Q ss_pred --CCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeec-----
Q 040144 149 --NLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGF----- 220 (289)
Q Consensus 149 --~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~----- 220 (289)
..++|+.|++++|. +.+ ...+. +++|+.|++ ++|.+.+..|..+..+++|+.|++++|.+++.
T Consensus 222 ~~~~~~L~~L~l~~n~-l~~--~~~l~~l~~L~~L~L------s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (390)
T 3o6n_A 222 GPVNVELTILKLQHNN-LTD--TAWLLNYPGLVEVDL------SYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ 292 (390)
T ss_dssp CCCCSSCCEEECCSSC-CCC--CGGGGGCTTCSEEEC------CSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSS
T ss_pred ccccccccEEECCCCC-Ccc--cHHHcCCCCccEEEC------CCCcCCCcChhHccccccCCEEECCCCcCcccCcccC
Confidence 11244555555554 332 12344 566666654 77777777777777777788888877777642
Q ss_pred -CCCceEEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCccccccccEEecccccCc
Q 040144 221 -IPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIG 284 (289)
Q Consensus 221 -~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~ 284 (289)
.|....|++++|.+. .++. .+..+++|+.|++++|++++. + +..+++|+.|++++|++.
T Consensus 293 ~l~~L~~L~L~~n~l~-~~~~-~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 293 PIPTLKVLDLSHNHLL-HVER-NQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CCTTCCEEECCSSCCC-CCGG-GHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEE
T ss_pred CCCCCCEEECCCCcce-ecCc-cccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCcc
Confidence 222227778887776 5666 567777788888888877753 2 566677778888887765
No 21
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=1.7e-28 Score=222.48 Aligned_cols=281 Identities=20% Similarity=0.208 Sum_probs=165.3
Q ss_pred CCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccc------cchh-hHhhhc
Q 040144 3 NLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSI------AFDW-LMVANK 75 (289)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------~~~~-~~~~~~ 75 (289)
+|++|++++|.+++..+..|+.+++|++|++++|.+....+.. +.++++|++|+++++.... .+.+ ...+..
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~ 327 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTT-TTTCTTCCEEECTTCBCCC------CCEECTTTTTT
T ss_pred CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhh-hcCCCCccEEeccchhhhcccccccccccChhhccc
Confidence 4677777777776666666777777777777776554433222 3444445555444332111 0000 002334
Q ss_pred CCCccEEEccCCccCCCCcccccCCCCCcEEecc----------------------------CCCCCCcchhhHhhcCCC
Q 040144 76 LLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLS----------------------------HNQFDNSFILSWVFALSH 127 (289)
Q Consensus 76 ~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~----------------------------~~~~~~~~~~~~~~~~~~ 127 (289)
+++|++|++++|.+....+..+..+++|+.|+++ +|.++ ...+..+..+++
T Consensus 328 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~ 406 (680)
T 1ziw_A 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS-KIESDAFSWLGH 406 (680)
T ss_dssp CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCC-EECTTTTTTCTT
T ss_pred CCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCC-eEChhhhhCCCC
Confidence 4455555555555544444344444444444433 33333 222334455566
Q ss_pred CCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccc--------------------cc
Q 040144 128 LPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQE--------------------SL 186 (289)
Q Consensus 128 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~--------------------~l 186 (289)
|++|++++|.+.+.+++..+..+++|+++++++|. +.+..+..+. +++|+.|++++ .+
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L 485 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred CCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence 66666666666544433455566666666666655 4333233333 33333333321 23
Q ss_pred cccCCcccccccccccCCCCCcEEEccCCeeeecC---------------CCceEEEeecceeeeeeccccccccccccE
Q 040144 187 DMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFI---------------PWSFELHIYDNKLNVTLFELHFANLIEMSW 251 (289)
Q Consensus 187 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~---------------~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~ 251 (289)
++++|.+++..+.++..+++|+.|++++|.+++.. +....|++++|.++ .+|...+.++++|+.
T Consensus 486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~ 564 (680)
T 1ziw_A 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKI 564 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred ECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcce
Confidence 34788888777777888888999999988887531 11118899999888 677657888999999
Q ss_pred EEecCCeeeeccCCCccccccccEEecccccCccCC
Q 040144 252 FRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIGSRF 287 (289)
Q Consensus 252 l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 287 (289)
|++++|++++..+..+..+++|+.|++++|++++..
T Consensus 565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence 999999998765556788889999999999887543
No 22
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=8.3e-29 Score=205.57 Aligned_cols=260 Identities=21% Similarity=0.248 Sum_probs=181.8
Q ss_pred CCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCcccccc-chhhHhhhcCCCccE
Q 040144 3 NLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIA-FDWLMVANKLLSLVE 81 (289)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~ 81 (289)
+++.++++++.++ .+|..+. +++++|++++|.+...+... +.++++|++|++++|.+... +. .+..+++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~ 104 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGD-FKNLKNLHTLILINNKISKISPG---AFAPLVKLER 104 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSSCCCCBCTT---TTTTCTTCCE
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhh-hccCCCCCEEECCCCcCCeeCHH---HhcCCCCCCE
Confidence 4677777777766 3554442 57788888887766655433 67788888888888877765 33 5677788888
Q ss_pred EEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeee-eeChhhhcCCCCccEEeCCC
Q 040144 82 LRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQG-TIDLEALGNLTSINRLDLSL 160 (289)
Q Consensus 82 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~~L~~L~l~~ 160 (289)
|++++|.++...... .++|+.|++++|.++ ...+..+..+++|++|++++|.+.. ...+..+..+++|++|++++
T Consensus 105 L~Ls~n~l~~l~~~~---~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 105 LYLSKNQLKELPEKM---PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp EECCSSCCSBCCSSC---CTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred EECCCCcCCccChhh---cccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence 888888777543322 267888888888776 4445566777888888888887752 12256677788888888888
Q ss_pred CCcccCCCCccccccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCce-------EEEeecce
Q 040144 161 NTGLTGRIPRSMALCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF-------ELHIYDNK 233 (289)
Q Consensus 161 n~~~~~~~~~~~~~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~-------~L~l~~n~ 233 (289)
|. +. .+|..+ .++|++|++ ++|.+++..+..+..+++|+.|++++|.+++..+..+ .|++++|.
T Consensus 181 n~-l~-~l~~~~-~~~L~~L~l------~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 181 TN-IT-TIPQGL-PPSLTELHL------DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp SC-CC-SCCSSC-CTTCSEEEC------TTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred Cc-cc-cCCccc-cccCCEEEC------CCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc
Confidence 77 44 344433 366777765 7777777777777888888888888887776544333 78888888
Q ss_pred eeeeeccccccccccccEEEecCCeeeeccCCCccc------cccccEEecccccCc
Q 040144 234 LNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIP------HFQLVALGLHSCYIG 284 (289)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~------~~~L~~l~l~~n~~~ 284 (289)
++ .+|. .+..+++|++|++++|++++..+..+.. .++++.+++++|.+.
T Consensus 252 l~-~lp~-~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 252 LV-KVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CS-SCCT-TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred Cc-cCCh-hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 77 6777 6778888888888888888755555543 366778888888764
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=1.5e-28 Score=208.59 Aligned_cols=264 Identities=18% Similarity=0.201 Sum_probs=211.9
Q ss_pred CCCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCcc
Q 040144 1 MGNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLV 80 (289)
Q Consensus 1 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 80 (289)
+++++.+++.++.++...+..+..+++|++|++++|.+...+... +..+++|++|++++|.+...++ ..+..+++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~ 120 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA-FAYAHTIQKLYMGFNAIRYLPP--HVFQNVPLLT 120 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCC
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhh-ccCCCCcCEEECCCCCCCcCCH--HHhcCCCCCC
Confidence 368999999999988655555788999999999999877665443 7889999999999999887743 2578899999
Q ss_pred EEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCC
Q 040144 81 ELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSL 160 (289)
Q Consensus 81 ~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 160 (289)
+|++++|.+....+..+..+++|++|++++|.++ ...+..+..+++|++|++++|.+.+ + .+..+++|+.+++++
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~-~---~~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH-V---DLSLIPSLFHANVSY 195 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSB-C---CGGGCTTCSEEECCS
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCEEECCCCcCCc-c---ccccccccceeeccc
Confidence 9999999999877666789999999999999997 5556668889999999999999873 3 234556666666666
Q ss_pred CCcccC------------------CCCccccccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCC
Q 040144 161 NTGLTG------------------RIPRSMALCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIP 222 (289)
Q Consensus 161 n~~~~~------------------~~~~~~~~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 222 (289)
|. +.. ..|... .++|+.|+ +++|.+++. ..+..+++|+.|++++|.+++..|
T Consensus 196 n~-l~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~------l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~ 265 (390)
T 3o6n_A 196 NL-LSTLAIPIAVEELDASHNSINVVRGPV-NVELTILK------LQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY 265 (390)
T ss_dssp SC-CSEEECCSSCSEEECCSSCCCEEECCC-CSSCCEEE------CCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES
T ss_pred cc-ccccCCCCcceEEECCCCeeeeccccc-cccccEEE------CCCCCCccc--HHHcCCCCccEEECCCCcCCCcCh
Confidence 65 321 111100 34555555 488888864 468899999999999999987655
Q ss_pred Cce-------EEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCccccccccEEecccccCcc
Q 040144 223 WSF-------ELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIGS 285 (289)
Q Consensus 223 ~~~-------~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 285 (289)
..+ .|++++|.++ .++. .+..+++|++|++++|++.+ +|..+..+++|+.|++++|++++
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~-~~~~-~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~ 332 (390)
T 3o6n_A 266 HPFVKMQRLERLYISNNRLV-ALNL-YGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVT 332 (390)
T ss_dssp GGGTTCSSCCEEECCSSCCC-EEEC-SSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCC
T ss_pred hHccccccCCEEECCCCcCc-ccCc-ccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCccce
Confidence 544 8999999998 5776 67889999999999999995 67778899999999999999974
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.7e-29 Score=222.30 Aligned_cols=107 Identities=25% Similarity=0.221 Sum_probs=76.0
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
+++++|++++|.+++..|..|.++++|++|++++|.+....+.. +.++++|++|++++|.+...+. . .+++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~---~--~l~~L~~ 94 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISV-FKFNQELEYLDLSHNKLVKISC---H--PTVNLKH 94 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGG-GTTCTTCCEEECCSSCCCEEEC---C--CCCCCSE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHH-hhcccCCCEEecCCCceeecCc---c--ccCCccE
Confidence 46778888888877666667777888888888877766554332 6677788888888887775543 2 6777888
Q ss_pred EEccCCccCCC-CcccccCCCCCcEEeccCCCCC
Q 040144 82 LRLSNCQLQHF-SPLATVNFSSLTMLDLSHNQFD 114 (289)
Q Consensus 82 L~l~~~~l~~~-~~~~l~~~~~L~~L~l~~~~~~ 114 (289)
|++++|.+... .|..++.+++|++|++++|.++
T Consensus 95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred EeccCCccccccchhhhccCCcceEEEecCcccc
Confidence 88888777763 3566777777777777777665
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=3e-29 Score=206.53 Aligned_cols=227 Identities=19% Similarity=0.262 Sum_probs=174.1
Q ss_pred CcccEEeccCccccccchhhHhhhcCCCccEEEccC-CccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCC
Q 040144 51 SLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSN-CQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLP 129 (289)
Q Consensus 51 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 129 (289)
.++++|+++++.+.....++..+..+++|++|++++ +.+....+..+..+++|++|++++|.++ ...+..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS-GAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE-EECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC-CcCCHHHhCCCCCC
Confidence 467778888777765111122667778888888874 7777666777777888888888888776 56666677778888
Q ss_pred EEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-cc-CcceeeccccccccCCcccccccccccCCCCC
Q 040144 130 FLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LC-NLKSINLQESLDMRSSSIYGHLTDQLGQFRNL 207 (289)
Q Consensus 130 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~-~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L 207 (289)
+|++++|.+.+.+ +..+..+++|++|++++|. +.+..|..+. ++ .|+.|++ ++|.+.+.+|..++.++ |
T Consensus 129 ~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~L~L------~~N~l~~~~~~~~~~l~-L 199 (313)
T 1ogq_A 129 TLDFSYNALSGTL-PPSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTI------SRNRLTGKIPPTFANLN-L 199 (313)
T ss_dssp EEECCSSEEESCC-CGGGGGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCEEEC------CSSEEEEECCGGGGGCC-C
T ss_pred EEeCCCCccCCcC-ChHHhcCCCCCeEECcCCc-ccCcCCHHHhhhhhcCcEEEC------cCCeeeccCChHHhCCc-c
Confidence 8888888877555 6677778888888888887 6666777776 65 7777775 77777777777777776 8
Q ss_pred cEEEccCCeeeecCCCce-------EEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCccccccccEEeccc
Q 040144 208 VTFNLVNNSIVGFIPWSF-------ELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHS 280 (289)
Q Consensus 208 ~~L~l~~n~~~~~~~~~~-------~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~ 280 (289)
+.|++++|.+.+..|..+ .|++++|.+++.++. +..+++|++|++++|++++.+|..+..+++|+.|++++
T Consensus 200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc--ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence 888888888776655444 778888888754444 77889999999999999999999999999999999999
Q ss_pred ccCccCCCC
Q 040144 281 CYIGSRFPL 289 (289)
Q Consensus 281 n~~~~~~p~ 289 (289)
|++++.+|+
T Consensus 278 N~l~~~ip~ 286 (313)
T 1ogq_A 278 NNLCGEIPQ 286 (313)
T ss_dssp SEEEEECCC
T ss_pred CcccccCCC
Confidence 999988884
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=3.8e-29 Score=221.92 Aligned_cols=266 Identities=17% Similarity=0.194 Sum_probs=189.0
Q ss_pred CCCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCcc
Q 040144 1 MGNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLV 80 (289)
Q Consensus 1 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 80 (289)
+++|++|++++|.+++..|.+|.++++|++|++++|.+..++.. .+++|++|++++|.+...+ .+..+..+++|+
T Consensus 75 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~----~l~~L~~L~Ls~N~l~~l~-~p~~~~~l~~L~ 149 (562)
T 3a79_B 75 LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC----PMASLRHLDLSFNDFDVLP-VCKEFGNLTKLT 149 (562)
T ss_dssp CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC----CCTTCSEEECCSSCCSBCC-CCGGGGGCTTCC
T ss_pred CCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc----ccccCCEEECCCCCccccC-chHhhcccCccc
Confidence 46788888888888877788888888888888888887765532 6888888888888877643 123677888888
Q ss_pred EEEccCCccCCCCcccccCCCCC--cEEeccCCCC--CCcchhhHhhc--------------------------------
Q 040144 81 ELRLSNCQLQHFSPLATVNFSSL--TMLDLSHNQF--DNSFILSWVFA-------------------------------- 124 (289)
Q Consensus 81 ~L~l~~~~l~~~~~~~l~~~~~L--~~L~l~~~~~--~~~~~~~~~~~-------------------------------- 124 (289)
+|++++|.+... .+..++++ +.|++++|.+ + ...+..+..
T Consensus 150 ~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~-~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~ 225 (562)
T 3a79_B 150 FLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIK-GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225 (562)
T ss_dssp EEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCC-SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEE
T ss_pred EEecCCCccccC---chhhhhhceeeEEEeeccccccc-ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEE
Confidence 888888887753 33444555 8888888876 2 111111111
Q ss_pred -------------------------------------------------CCCCCEEEccCceeeeeeChhhh--------
Q 040144 125 -------------------------------------------------LSHLPFLDLGFNNFQGTIDLEAL-------- 147 (289)
Q Consensus 125 -------------------------------------------------~~~L~~L~l~~n~~~~~~~~~~~-------- 147 (289)
..+|++|++++|.+.+.+ |..+
T Consensus 226 L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~i-p~~~~~~~~~~L 304 (562)
T 3a79_B 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERI-DREEFTYSETAL 304 (562)
T ss_dssp EEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCC-CCCCCCCCSCSC
T ss_pred ecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccc-cchhhhcccccc
Confidence 125677777777766544 2222
Q ss_pred ---------------------------------------------cCCCCccEEeCCCCCcccCCCCcccc-ccCcceee
Q 040144 148 ---------------------------------------------GNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSIN 181 (289)
Q Consensus 148 ---------------------------------------------~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~ 181 (289)
..+++|++|++++|. +.+..|..+. +++|+.|+
T Consensus 305 ~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 383 (562)
T 3a79_B 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV-FTDSVFQGCSTLKRLQTLI 383 (562)
T ss_dssp CEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC-CCTTTTTTCCSCSSCCEEE
T ss_pred hheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCc-cccchhhhhcccCCCCEEE
Confidence 456677788887777 6666676776 77777777
Q ss_pred ccccccccCCccccc--ccccccCCCCCcEEEccCCeeeecCCCce--------EEEeecceeeeeeccccccccccccE
Q 040144 182 LQESLDMRSSSIYGH--LTDQLGQFRNLVTFNLVNNSIVGFIPWSF--------ELHIYDNKLNVTLFELHFANLIEMSW 251 (289)
Q Consensus 182 l~~~l~l~~~~~~~~--~~~~l~~~~~L~~L~l~~n~~~~~~~~~~--------~L~l~~n~~~~~~~~~~~~~~~~L~~ 251 (289)
+ ++|.+++. .|..++.+++|+.|++++|.+.+.+|... .|++++|.+++.++. .+. ++|+.
T Consensus 384 L------~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~--~~L~~ 454 (562)
T 3a79_B 384 L------QRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR-CLP--PKVKV 454 (562)
T ss_dssp C------CSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS-SCC--TTCSE
T ss_pred C------CCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhh-hhc--CcCCE
Confidence 5 77777753 34567788888888888888876454432 788888888765555 333 68899
Q ss_pred EEecCCeeeeccCCCccccccccEEecccccCccCCC
Q 040144 252 FRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIGSRFP 288 (289)
Q Consensus 252 l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p 288 (289)
|++++|+++ .+|..+..+++|+.|++++|+++ .+|
T Consensus 455 L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~ 489 (562)
T 3a79_B 455 LDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVP 489 (562)
T ss_dssp EECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCC
T ss_pred EECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCC
Confidence 999999888 47777778899999999999987 565
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=7.3e-29 Score=206.09 Aligned_cols=260 Identities=22% Similarity=0.261 Sum_probs=148.4
Q ss_pred CCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEE
Q 040144 3 NLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVEL 82 (289)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 82 (289)
+++.++++++.++ .+|..+ .+++++|++++|.+...+... +.++++|++|++++|.+....+ ..+..+++|++|
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L 107 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDD-FKGLQHLYALVLVNNKISKIHE--KAFSPLRKLQKL 107 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCEECG--GGSTTCTTCCEE
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhH-hhCCCCCcEEECCCCccCccCH--hHhhCcCCCCEE
Confidence 4566666666665 344433 246667777666655443322 5566667777777666655421 245666667777
Q ss_pred EccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeee-eeChhhhcCCCCccEEeCCCC
Q 040144 83 RLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQG-TIDLEALGNLTSINRLDLSLN 161 (289)
Q Consensus 83 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~~L~~L~l~~n 161 (289)
++++|.+....... . ++|++|++++|.++ ...+..+..+++|++|++++|.+.. ...+..+..+ +|+++++++|
T Consensus 108 ~L~~n~l~~l~~~~-~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 108 YISKNHLVEIPPNL-P--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA 182 (332)
T ss_dssp ECCSSCCCSCCSSC-C--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred ECCCCcCCccCccc-c--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence 77766666443222 1 56667777666665 3333345566667777776666642 1224445555 6666666666
Q ss_pred CcccCCCCccccccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCce-------EEEeeccee
Q 040144 162 TGLTGRIPRSMALCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF-------ELHIYDNKL 234 (289)
Q Consensus 162 ~~~~~~~~~~~~~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~-------~L~l~~n~~ 234 (289)
. +. .+|..+ .++|++|++ ++|.+.+..+..+..+++|+.|++++|.+++..+..+ .|++++|.+
T Consensus 183 ~-l~-~l~~~~-~~~L~~L~l------~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 253 (332)
T 2ft3_A 183 K-LT-GIPKDL-PETLNELHL------DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253 (332)
T ss_dssp B-CS-SCCSSS-CSSCSCCBC------CSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC
T ss_pred C-CC-ccCccc-cCCCCEEEC------CCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC
Confidence 5 43 233332 245555554 5666665555566666666666666666654433222 566666666
Q ss_pred eeeeccccccccccccEEEecCCeeeeccCCCccc------cccccEEecccccCc
Q 040144 235 NVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIP------HFQLVALGLHSCYIG 284 (289)
Q Consensus 235 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~------~~~L~~l~l~~n~~~ 284 (289)
+ .+|. .+..+++|+.|++++|++++..+..+.. .++|+.+++++|.+.
T Consensus 254 ~-~lp~-~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 254 S-RVPA-GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp C-BCCT-TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred e-ecCh-hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 5 5665 5666666666666666666544444433 245666666666554
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=5.4e-28 Score=202.06 Aligned_cols=253 Identities=23% Similarity=0.250 Sum_probs=104.6
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
++|++|++++|.+++ .+. +..+++|++|++++|.+...+ .+..+++|++|++++|.+...+ .+..+++|++
T Consensus 66 ~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~~---~~~~l~~L~~L~l~~n~i~~~~----~~~~l~~L~~ 136 (347)
T 4fmz_A 66 TNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDIS---ALQNLTNLRELYLNEDNISDIS----PLANLTKMYS 136 (347)
T ss_dssp TTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCG---GGTTCTTCSEEECTTSCCCCCG----GGTTCTTCCE
T ss_pred CCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCch---HHcCCCcCCEEECcCCcccCch----hhccCCceeE
Confidence 344444444444442 111 444444444444444333322 1344444444444444443322 1334444444
Q ss_pred EEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCC
Q 040144 82 LRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLN 161 (289)
Q Consensus 82 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 161 (289)
|++++|...... ..+..+++|+.|++++|.+. . .+. +..+++|++|++++|.+. .+ +. +..+++|+.+++++|
T Consensus 137 L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~-~-~~~-~~~l~~L~~L~l~~n~l~-~~-~~-~~~l~~L~~L~l~~n 209 (347)
T 4fmz_A 137 LNLGANHNLSDL-SPLSNMTGLNYLTVTESKVK-D-VTP-IANLTDLYSLSLNYNQIE-DI-SP-LASLTSLHYFTAYVN 209 (347)
T ss_dssp EECTTCTTCCCC-GGGTTCTTCCEEECCSSCCC-C-CGG-GGGCTTCSEEECTTSCCC-CC-GG-GGGCTTCCEEECCSS
T ss_pred EECCCCCCcccc-cchhhCCCCcEEEecCCCcC-C-chh-hccCCCCCEEEccCCccc-cc-cc-ccCCCccceeecccC
Confidence 444444222211 12344444444444444443 1 111 334445555555555443 12 11 334444444444444
Q ss_pred CcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeec-----CCCceEEEeecceee
Q 040144 162 TGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGF-----IPWSFELHIYDNKLN 235 (289)
Q Consensus 162 ~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~-----~~~~~~L~l~~n~~~ 235 (289)
. +.+..+ +. +++|++|++ ++|.+++..+ +..+++|+.|++++|.+++. .+....|++++|.++
T Consensus 210 ~-l~~~~~--~~~~~~L~~L~l------~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~ 278 (347)
T 4fmz_A 210 Q-ITDITP--VANMTRLNSLKI------GNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQIS 278 (347)
T ss_dssp C-CCCCGG--GGGCTTCCEEEC------CSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred C-CCCCch--hhcCCcCCEEEc------cCCccCCCcc--hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccC
Confidence 3 221111 33 444444443 4444443322 44445555555555544421 011114444444444
Q ss_pred eeeccccccccccccEEEecCCeeeeccCCCccccccccEEecccccCc
Q 040144 236 VTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIG 284 (289)
Q Consensus 236 ~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~ 284 (289)
+ ++ .+..+++|+.|++++|++++..+..+..+++|+.|++++|+++
T Consensus 279 ~-~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 279 D-IS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp C-CG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred C-Ch--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 2 21 2444444555555544444444444444444444555544444
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=4.6e-28 Score=217.78 Aligned_cols=136 Identities=21% Similarity=0.192 Sum_probs=119.7
Q ss_pred CCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEE
Q 040144 3 NLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVEL 82 (289)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 82 (289)
.+++|+|++|.+++..+.+|.++++|++|++++|.+..+++.. +.++++|++|++++|.+...+. ..+.++++|++|
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~-f~~L~~L~~L~Ls~N~l~~l~~--~~f~~L~~L~~L 129 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTGNPIQSLAL--GAFSGLSSLQKL 129 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCCEECG--GGGTTCTTCCEE
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhH-hcCCCCCCEEEccCCcCCCCCH--HHhcCCCCCCEE
Confidence 6899999999999877889999999999999999887776544 7889999999999999888753 267899999999
Q ss_pred EccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeee
Q 040144 83 RLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGT 141 (289)
Q Consensus 83 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 141 (289)
++++|.++...+..++.+++|++|++++|.++....+..++.+++|++|++++|.+.+.
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 99999999987788999999999999999987445677788899999999999988743
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=2.1e-28 Score=221.94 Aligned_cols=276 Identities=22% Similarity=0.224 Sum_probs=162.0
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
+++++|++++|.+++..+..|.++++|++|++++|.+....+.. +.++++|++|++++|.+...+. ..+..+++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~l~~--~~~~~l~~L~~ 101 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL-CQKLPMLKVLNLQHNELSQLSD--KTFAFCTNLTE 101 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTH-HHHCTTCCEEECCSSCCCCCCT--TTTTTCTTCSE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHH-HhcccCcCEEECCCCccCccCh--hhhccCCCCCE
Confidence 35777777777777655566777777777777776655544332 5567777777777776665532 13566777777
Q ss_pred EEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhc--CCCCccEEeCC
Q 040144 82 LRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALG--NLTSINRLDLS 159 (289)
Q Consensus 82 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~--~~~~L~~L~l~ 159 (289)
|++++|.+....+..++.+++|++|++++|.++ ...+..++.+++|++|++++|.+.+.. +..+. .+++|++|+++
T Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS-STKLGTQVQLENLQELLLSNNKIQALK-SEELDIFANSSLKKLELS 179 (680)
T ss_dssp EECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS-CCCCCSSSCCTTCCEEECCSSCCCCBC-HHHHGGGTTCEESEEECT
T ss_pred EECCCCccCccChhHccccCCCCEEECCCCccc-ccCchhhcccccCCEEEccCCcccccC-HHHhhccccccccEEECC
Confidence 777777776666566677777777777777665 444444556677777777777665332 44333 34667777777
Q ss_pred CCCcccCCCCcccc-ccCcceeeccc---------------------cccc--------------------------cCC
Q 040144 160 LNTGLTGRIPRSMA-LCNLKSINLQE---------------------SLDM--------------------------RSS 191 (289)
Q Consensus 160 ~n~~~~~~~~~~~~-~~~L~~L~l~~---------------------~l~l--------------------------~~~ 191 (289)
+|. +.+..|..+. +++|+.+.+.. .+++ ++|
T Consensus 180 ~n~-l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n 258 (680)
T 1ziw_A 180 SNQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258 (680)
T ss_dssp TCC-CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTS
T ss_pred CCc-ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCC
Confidence 666 5544444444 43333332211 2223 444
Q ss_pred cccccccccccCCCCCcEEEccCCeeeecCCCce-------EEEeecceeee--------eeccccccccccccEEEecC
Q 040144 192 SIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF-------ELHIYDNKLNV--------TLFELHFANLIEMSWFRVGG 256 (289)
Q Consensus 192 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~-------~L~l~~n~~~~--------~~~~~~~~~~~~L~~l~l~~ 256 (289)
.+.+..+.+++.+++|+.|++++|.+.+..|..+ .|++++|...+ .+....+..+++|++|++++
T Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~ 338 (680)
T 1ziw_A 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338 (680)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCS
T ss_pred CcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCC
Confidence 4444444445555555555555555544333322 44444432221 11112445566777777777
Q ss_pred CeeeeccCCCccccccccEEecccccC
Q 040144 257 NQLTLEVKHDWIPHFQLVALGLHSCYI 283 (289)
Q Consensus 257 n~~~~~~~~~~~~~~~L~~l~l~~n~~ 283 (289)
|.+.+..+..+..+++|+.|++++|.+
T Consensus 339 n~l~~~~~~~~~~l~~L~~L~Ls~n~~ 365 (680)
T 1ziw_A 339 NDIPGIKSNMFTGLINLKYLSLSNSFT 365 (680)
T ss_dssp CCBCCCCTTTTTTCTTCCEEECTTCBS
T ss_pred CccCCCChhHhccccCCcEEECCCCch
Confidence 777766666677777777777777764
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=7.1e-28 Score=201.32 Aligned_cols=254 Identities=20% Similarity=0.269 Sum_probs=209.9
Q ss_pred CCCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCcc
Q 040144 1 MGNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLV 80 (289)
Q Consensus 1 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 80 (289)
+++|++|++++|.+++ + +.+..+++|++|++++|.+...+. +..+++|++|++++|....... .+..+++|+
T Consensus 87 l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~---~~~~l~~L~ 158 (347)
T 4fmz_A 87 LVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLS---PLSNMTGLN 158 (347)
T ss_dssp CTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCG---GGTTCTTCC
T ss_pred CCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccCchh---hccCCceeEEECCCCCCccccc---chhhCCCCc
Confidence 5789999999999875 3 469999999999999998776654 6789999999999996655544 578999999
Q ss_pred EEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCC
Q 040144 81 ELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSL 160 (289)
Q Consensus 81 ~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 160 (289)
+|++.+|.+....+ +..+++|+.|++++|.+. ..+. +..+++|+.+++++|.+.+ . + .+..+++|++|++++
T Consensus 159 ~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~--~~~~-~~~l~~L~~L~l~~n~l~~-~-~-~~~~~~~L~~L~l~~ 230 (347)
T 4fmz_A 159 YLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE--DISP-LASLTSLHYFTAYVNQITD-I-T-PVANMTRLNSLKIGN 230 (347)
T ss_dssp EEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC--CCGG-GGGCTTCCEEECCSSCCCC-C-G-GGGGCTTCCEEECCS
T ss_pred EEEecCCCcCCchh--hccCCCCCEEEccCCccc--cccc-ccCCCccceeecccCCCCC-C-c-hhhcCCcCCEEEccC
Confidence 99999999887643 788999999999999986 3333 7789999999999999874 3 2 288899999999999
Q ss_pred CCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeec-----CCCceEEEeeccee
Q 040144 161 NTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGF-----IPWSFELHIYDNKL 234 (289)
Q Consensus 161 n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~-----~~~~~~L~l~~n~~ 234 (289)
|. +.+ .+. +. +++|++|++ ++|.+++. ..+..+++|+.|++++|.+++. .+....|++++|.+
T Consensus 231 n~-l~~-~~~-~~~l~~L~~L~l------~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l 299 (347)
T 4fmz_A 231 NK-ITD-LSP-LANLSQLTWLEI------GTNQISDI--NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQL 299 (347)
T ss_dssp SC-CCC-CGG-GTTCTTCCEEEC------CSSCCCCC--GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC
T ss_pred Cc-cCC-Ccc-hhcCCCCCEEEC------CCCccCCC--hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcC
Confidence 98 654 333 66 899999987 88888764 4688999999999999998753 12222999999999
Q ss_pred eeeeccccccccccccEEEecCCeeeeccCCCccccccccEEecccccCc
Q 040144 235 NVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIG 284 (289)
Q Consensus 235 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~ 284 (289)
++..+. .+.++++|++|++++|++++..| +..+++|+.|++++|.|+
T Consensus 300 ~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 300 GNEDME-VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CGGGHH-HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCcChh-HhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 866666 89999999999999999998655 889999999999999986
No 32
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=4.3e-29 Score=228.80 Aligned_cols=267 Identities=15% Similarity=0.215 Sum_probs=188.8
Q ss_pred CCcEEEccCCcccccCCCccCCCCCCcEEeC-CCcccccc---C------------------------------------
Q 040144 3 NLRYLNFSKTRICGIIPQQLGNLSNLQFLDL-SSKYLLYV---D------------------------------------ 42 (289)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l-~~~~~~~~---~------------------------------------ 42 (289)
.++.|+|+++.+.|.+|++++++++|++|++ ++|.+... .
T Consensus 324 ~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l 403 (876)
T 4ecn_A 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL 403 (876)
T ss_dssp CEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred CEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHH
Confidence 5788999999999999999999999999999 55531100 0
Q ss_pred ------------------------------------CCcccCCCCcccEEeccCccccc------------------cch
Q 040144 43 ------------------------------------NFLWLSGISLLEHLDLRYVNLSI------------------AFD 68 (289)
Q Consensus 43 ------------------------------------~~~~~~~l~~L~~L~l~~~~~~~------------------~~~ 68 (289)
.+..+.++++|++|++++|.+.. .+.
T Consensus 404 ~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~ 483 (876)
T 4ecn_A 404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE 483 (876)
T ss_dssp HHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS
T ss_pred HHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh
Confidence 11236778899999999998887 333
Q ss_pred hhHhhh--cCCCccEEEccCCccCCCCcccccCCCCCcEEeccCCC-CCCc-chhhHhhcCC-------CCCEEEccCce
Q 040144 69 WLMVAN--KLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQ-FDNS-FILSWVFALS-------HLPFLDLGFNN 137 (289)
Q Consensus 69 ~~~~~~--~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~-------~L~~L~l~~n~ 137 (289)
.+. .+++|++|++++|.+....|..++.+++|+.|++++|. ++ + .+|..++.+. +|++|++++|.
T Consensus 484 ---~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls-g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 484 ---ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS-AAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp ---CCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC-HHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred ---hhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc-cccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 555 89999999999999888888888999999999999997 76 4 5676665554 89999999998
Q ss_pred eeeeeChh--hhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCC--------
Q 040144 138 FQGTIDLE--ALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRN-------- 206 (289)
Q Consensus 138 ~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~-------- 206 (289)
+. .+ |. .++.+++|+.|++++|. +. .+| .+. +++|+.|++ ++|.+. .+|..+..+++
T Consensus 560 L~-~i-p~~~~l~~L~~L~~L~Ls~N~-l~-~lp-~~~~L~~L~~L~L------s~N~l~-~lp~~l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 560 LE-EF-PASASLQKMVKLGLLDCVHNK-VR-HLE-AFGTNVKLTDLKL------DYNQIE-EIPEDFCAFTDQVEGLGFS 627 (876)
T ss_dssp CC-BC-CCHHHHTTCTTCCEEECTTSC-CC-BCC-CCCTTSEESEEEC------CSSCCS-CCCTTSCEECTTCCEEECC
T ss_pred CC-cc-CChhhhhcCCCCCEEECCCCC-cc-cch-hhcCCCcceEEEC------cCCccc-cchHHHhhccccCCEEECc
Confidence 88 66 65 78888888888888888 65 666 566 777777776 444444 34444444444
Q ss_pred ------------------CcEEEccCCeeeecCCC------------ceEEEeecceeeeeeccccccccccccEEEecC
Q 040144 207 ------------------LVTFNLVNNSIVGFIPW------------SFELHIYDNKLNVTLFELHFANLIEMSWFRVGG 256 (289)
Q Consensus 207 ------------------L~~L~l~~n~~~~~~~~------------~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~ 256 (289)
|+.|++++|.+.+.+|. ...|++++|.++ .+|...+..+++|+.|++++
T Consensus 628 ~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 628 HNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSN 706 (876)
T ss_dssp SSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCS
T ss_pred CCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCC
Confidence 45555555544433221 115666666666 45552344677788888888
Q ss_pred CeeeeccCCCccc--------cccccEEecccccCccCCC
Q 040144 257 NQLTLEVKHDWIP--------HFQLVALGLHSCYIGSRFP 288 (289)
Q Consensus 257 n~~~~~~~~~~~~--------~~~L~~l~l~~n~~~~~~p 288 (289)
|++. .+|..+.. +++|+.|++++|+++ .+|
T Consensus 707 N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp 744 (876)
T 4ecn_A 707 NLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLS 744 (876)
T ss_dssp CCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCC
T ss_pred CcCC-ccChHHhccccccccccCCccEEECCCCCCc-cch
Confidence 8777 35554332 237888888888776 555
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=3.3e-28 Score=217.17 Aligned_cols=263 Identities=19% Similarity=0.175 Sum_probs=183.3
Q ss_pred CCCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCcc
Q 040144 1 MGNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLV 80 (289)
Q Consensus 1 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 80 (289)
+++|++|++++|.+++..+..|..+++|++|++++|.+...++.. +.++++|++|++++|.+...+. ..+..+++|+
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~l~~--~~~~~l~~L~ 150 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV-FQNVPLLTVLVLERNDLSSLPR--GIFHNTPKLT 150 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCC
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHH-HcCCCCCCEEEeeCCCCCCCCH--HHhccCCCCC
Confidence 467788888888877766667788888888888877766555433 5677788888888887776543 1346777888
Q ss_pred EEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhh-------------
Q 040144 81 ELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEAL------------- 147 (289)
Q Consensus 81 ~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~------------- 147 (289)
+|++++|.+....+..++.+++|+.|++++|.++ . .+ +..+++|+.|++++|.+.+...+..+
T Consensus 151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~-~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~ 226 (597)
T 3oja_B 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-H-VD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV 226 (597)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-B-CC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEE
T ss_pred EEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-C-cC--hhhhhhhhhhhcccCccccccCCchhheeeccCCccccc
Confidence 8888888877776667777788888888887775 2 21 33455555555555544321000000
Q ss_pred --cCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeec----
Q 040144 148 --GNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGF---- 220 (289)
Q Consensus 148 --~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~---- 220 (289)
...++|+.|++++|. +.+ +..+. +++|+.|++ ++|.+.+..|..+..+++|+.|++++|.+++.
T Consensus 227 ~~~~~~~L~~L~L~~n~-l~~--~~~l~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 297 (597)
T 3oja_B 227 RGPVNVELTILKLQHNN-LTD--TAWLLNYPGLVEVDL------SYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG 297 (597)
T ss_dssp ECSCCSCCCEEECCSSC-CCC--CGGGGGCTTCSEEEC------CSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSS
T ss_pred ccccCCCCCEEECCCCC-CCC--ChhhccCCCCCEEEC------CCCccCCCCHHHhcCccCCCEEECCCCCCCCCCccc
Confidence 012456777777776 443 34555 777777775 78888888888888888999999998888753
Q ss_pred --CCCceEEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCccccccccEEecccccCc
Q 040144 221 --IPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIG 284 (289)
Q Consensus 221 --~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~ 284 (289)
+|....|++++|.++ .+|. .+..+++|+.|++++|++.+. + +..+++|+.|++++|.+.
T Consensus 298 ~~l~~L~~L~Ls~N~l~-~i~~-~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 298 QPIPTLKVLDLSHNHLL-HVER-NQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp SCCTTCCEEECCSSCCC-CCGG-GHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEE
T ss_pred ccCCCCcEEECCCCCCC-ccCc-ccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCC
Confidence 223338899998888 6777 678888999999999988763 2 567788888999988875
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=6e-27 Score=194.37 Aligned_cols=262 Identities=19% Similarity=0.198 Sum_probs=210.4
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
+++++|++++|.+++..+..|.++++|++|++++|.+....+.. +.++++|++|++++|.+...+. .+ .++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~l~~---~~--~~~L~~ 125 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERLYLSKNQLKELPE---KM--PKTLQE 125 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSSCCSBCCS---SC--CTTCCE
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH-hcCCCCCCEEECCCCcCCccCh---hh--cccccE
Confidence 57899999999999877778999999999999998877664433 7889999999999998887643 22 278999
Q ss_pred EEccCCccCCCCcccccCCCCCcEEeccCCCCCC-cchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCC
Q 040144 82 LRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDN-SFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSL 160 (289)
Q Consensus 82 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 160 (289)
|++++|.+....+..+..+++|+.|++++|.++. ...+..+..+++|++|++++|.+. .+ +..+. ++|++|++++
T Consensus 126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l-~~~~~--~~L~~L~l~~ 201 (330)
T 1xku_A 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TI-PQGLP--PSLTELHLDG 201 (330)
T ss_dssp EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SC-CSSCC--TTCSEEECTT
T ss_pred EECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cC-Ccccc--ccCCEEECCC
Confidence 9999999998877778999999999999998862 234566788999999999999987 45 44332 7899999999
Q ss_pred CCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCce-------EEEeecc
Q 040144 161 NTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF-------ELHIYDN 232 (289)
Q Consensus 161 n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~-------~L~l~~n 232 (289)
|. +.+..+..+. +++|+.|++ ++|.+.+..+..+..+++|+.|++++|.++ .+|..+ .|++++|
T Consensus 202 n~-l~~~~~~~~~~l~~L~~L~L------s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 202 NK-ITKVDAASLKGLNNLAKLGL------SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp SC-CCEECTGGGTTCTTCCEEEC------CSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSS
T ss_pred Cc-CCccCHHHhcCCCCCCEEEC------CCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCC
Confidence 98 7766677787 899998886 889998888888999999999999999988 555444 8999999
Q ss_pred eeeeeeccccccc------cccccEEEecCCeeee--ccCCCccccccccEEeccccc
Q 040144 233 KLNVTLFELHFAN------LIEMSWFRVGGNQLTL--EVKHDWIPHFQLVALGLHSCY 282 (289)
Q Consensus 233 ~~~~~~~~~~~~~------~~~L~~l~l~~n~~~~--~~~~~~~~~~~L~~l~l~~n~ 282 (289)
.++ .++...+.. ...++.+++++|++.. ..|..+..+++++.+++++|+
T Consensus 274 ~i~-~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 274 NIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cCC-ccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 998 455435543 4788999999998864 455678888999999999885
No 35
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=206.13 Aligned_cols=265 Identities=20% Similarity=0.194 Sum_probs=199.2
Q ss_pred cEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEc
Q 040144 5 RYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRL 84 (289)
Q Consensus 5 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 84 (289)
...+.+++.++ .+|..+. ++|++|++++|.+...+... +.++++|++|++++|.+....+ ..+..+++|++|++
T Consensus 34 ~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L 107 (353)
T 2z80_A 34 GICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSD-LQRCVNLQALVLTSNGINTIEE--DSFSSLGSLEHLDL 107 (353)
T ss_dssp SEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTSCCCEECT--TTTTTCTTCCEEEC
T ss_pred eEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHH-hccCCCCCEEECCCCccCccCH--hhcCCCCCCCEEEC
Confidence 34566666666 3555443 48889999888876665433 6788889999998888777532 25778888999999
Q ss_pred cCCccCCCCcccccCCCCCcEEeccCCCCCCcchhh--HhhcCCCCCEEEccCce-eeeeeChhhhcCCCCccEEeCCCC
Q 040144 85 SNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILS--WVFALSHLPFLDLGFNN-FQGTIDLEALGNLTSINRLDLSLN 161 (289)
Q Consensus 85 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n 161 (289)
++|.++...+..+..+++|++|++++|.++ .++. .+..+++|++|++++|+ +. .+++..++.+++|++|++++|
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYK--TLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCCCS--SSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEET
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCCCc--ccCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCC
Confidence 998888776666788889999999888886 3333 56778889999998884 44 443667888888999999888
Q ss_pred CcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCce----------EEEee
Q 040144 162 TGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF----------ELHIY 230 (289)
Q Consensus 162 ~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~----------~L~l~ 230 (289)
. +.+..|..+. +++|++|++ ++|.+.......+..+++|+.|++++|.+++..+..+ .++++
T Consensus 185 ~-l~~~~~~~l~~l~~L~~L~l------~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 185 D-LQSYEPKSLKSIQNVSHLIL------HMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257 (353)
T ss_dssp T-CCEECTTTTTTCSEEEEEEE------ECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred C-cCccCHHHHhccccCCeecC------CCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccc
Confidence 8 6666677777 888888876 7777765444445568889999999988876433322 56777
Q ss_pred cceeee----eeccccccccccccEEEecCCeeeeccCCC-ccccccccEEecccccCccCC
Q 040144 231 DNKLNV----TLFELHFANLIEMSWFRVGGNQLTLEVKHD-WIPHFQLVALGLHSCYIGSRF 287 (289)
Q Consensus 231 ~n~~~~----~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~ 287 (289)
++.+.+ .+|. .+.++++|+.|++++|+++. +|.. +..+++|+.|++++|++++..
T Consensus 258 ~~~l~~~~l~~l~~-~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 258 NVKITDESLFQVMK-LLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp SCBCCHHHHHHHHH-HHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cccccCcchhhhHH-HHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 776654 4666 78899999999999999995 6665 589999999999999988643
No 36
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=9.4e-28 Score=197.17 Aligned_cols=250 Identities=17% Similarity=0.191 Sum_probs=188.2
Q ss_pred cEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEc
Q 040144 5 RYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRL 84 (289)
Q Consensus 5 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 84 (289)
+.++..++.++ .+|..+ .+++++|++++|.+..++... +.++++|++|++++|.+.........+..+++|++|++
T Consensus 10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGV-FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTT-TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhH-hhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 45677777776 355544 368999999998877665433 67889999999999988755222235667899999999
Q ss_pred cCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcc
Q 040144 85 SNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGL 164 (289)
Q Consensus 85 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 164 (289)
++|.+... +..+..+++|+.|++++|.++.......+..+++|++|++++|.+.+.. +..+..+++|++|++++|. +
T Consensus 86 s~n~i~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~-l 162 (306)
T 2z66_A 86 SFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNS-F 162 (306)
T ss_dssp CSCSEEEE-EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS-TTTTTTCTTCCEEECTTCE-E
T ss_pred CCCccccC-hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc-hhhcccCcCCCEEECCCCc-c
Confidence 99988764 4457888999999999998862212245778889999999999887554 7778889999999999998 6
Q ss_pred cC-CCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCceEEEeecceeeeeecccc
Q 040144 165 TG-RIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELH 242 (289)
Q Consensus 165 ~~-~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~ 242 (289)
.+ ..|..+. +++|+.|++ ++|.+++..+..++.+++|+.|++++|.+++. +...
T Consensus 163 ~~~~~~~~~~~l~~L~~L~L------s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------------~~~~ 218 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDL------SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL------------------DTFP 218 (306)
T ss_dssp GGGEECSCCTTCTTCCEEEC------TTSCCCEECTTTTTTCTTCCEEECTTSCCSBC------------------CSGG
T ss_pred ccccchhHHhhCcCCCEEEC------CCCCcCCcCHHHhcCCCCCCEEECCCCccCcc------------------Chhh
Confidence 54 4677777 888998886 88888888888888999999999999888732 2224
Q ss_pred ccccccccEEEecCCeeeeccCCCccccc-cccEEecccccCcc
Q 040144 243 FANLIEMSWFRVGGNQLTLEVKHDWIPHF-QLVALGLHSCYIGS 285 (289)
Q Consensus 243 ~~~~~~L~~l~l~~n~~~~~~~~~~~~~~-~L~~l~l~~n~~~~ 285 (289)
+..+++|+.|++++|++.+..+..+..++ +|+.|++++|.++.
T Consensus 219 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 56677777777777777776666676663 77777777777653
No 37
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=1.5e-27 Score=220.77 Aligned_cols=268 Identities=23% Similarity=0.227 Sum_probs=189.7
Q ss_pred CCCCcEEEccCCcccccC-CCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCc
Q 040144 1 MGNLRYLNFSKTRICGII-PQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSL 79 (289)
Q Consensus 1 ~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 79 (289)
+++|++|++++|...+.+ |.+|.++++|++|++++|.+....+.. +.++++|++|++++|.+.........+..+++|
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L 125 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA-FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS-SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH-ccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence 467889999988655444 778888999999999988876664433 778889999999988877632111136788889
Q ss_pred cEEEccCCccCCCCc-ccccCCCCCcEEeccCCCCCCcchhhHhhcC--CCCCEEEccCceeeeeeChhhhcCC------
Q 040144 80 VELRLSNCQLQHFSP-LATVNFSSLTMLDLSHNQFDNSFILSWVFAL--SHLPFLDLGFNNFQGTIDLEALGNL------ 150 (289)
Q Consensus 80 ~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~~~------ 150 (289)
++|++++|.+....+ ..++.+++|++|++++|.++ ...+..+..+ ++|+.|++++|.+.+.. +..++.+
T Consensus 126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~-~~~~~~l~~l~~~~L~~L~L~~n~l~~~~-~~~~~~~~~~~~~ 203 (844)
T 3j0a_A 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRV-SVDWGKCMNPFRN 203 (844)
T ss_dssp CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC-CCCSGGGHHHHHCSSCCCEECCSBSCCCC-CCCCCSSSCTTTT
T ss_pred CEEECCCCcccccccchhHhhCCCCCEEECCCCcCC-eeCHHHcccccCCccceEECCCCcccccc-ccchhhcCCcccc
Confidence 999999988877644 46788888999999888876 3333333333 44444444444443222 2112111
Q ss_pred --------------------------------------------------------------CCccEEeCCCCCcccCCC
Q 040144 151 --------------------------------------------------------------TSINRLDLSLNTGLTGRI 168 (289)
Q Consensus 151 --------------------------------------------------------------~~L~~L~l~~n~~~~~~~ 168 (289)
++++.|++++|. +.+..
T Consensus 204 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~ 282 (844)
T 3j0a_A 204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSLN 282 (844)
T ss_dssp CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC-CCEEC
T ss_pred CceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc-ccccC
Confidence 356666666665 44444
Q ss_pred Ccccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCce-------EEEeecceeeeeecc
Q 040144 169 PRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF-------ELHIYDNKLNVTLFE 240 (289)
Q Consensus 169 ~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~-------~L~l~~n~~~~~~~~ 240 (289)
+..+. +++|+.|++ ++|.+.+..+..+..+++|+.|++++|.+++..|..+ .|++++|.+.+ ++.
T Consensus 283 ~~~~~~l~~L~~L~L------~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~ 355 (844)
T 3j0a_A 283 SRVFETLKDLKVLNL------AYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI-IQD 355 (844)
T ss_dssp SCCSSSCCCCCEEEE------ESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCC-CCS
T ss_pred hhhhhcCCCCCEEEC------CCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCc-cCh
Confidence 55555 666666665 8999998888899999999999999999987655544 89999999985 444
Q ss_pred ccccccccccEEEecCCeeeeccCCCccccccccEEecccccCc
Q 040144 241 LHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIG 284 (289)
Q Consensus 241 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~ 284 (289)
..+.++++|+.|++++|.+++. + .+++|+.+++++|+++
T Consensus 356 ~~~~~l~~L~~L~Ls~N~l~~i-~----~~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 356 QTFKFLEKLQTLDLRDNALTTI-H----FIPSIPDIFLSGNKLV 394 (844)
T ss_dssp SCSCSCCCCCEEEEETCCSCCC-S----SCCSCSEEEEESCCCC
T ss_pred hhhcCCCCCCEEECCCCCCCcc-c----CCCCcchhccCCCCcc
Confidence 3788999999999999998852 2 2666777777777765
No 38
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=5.2e-27 Score=203.60 Aligned_cols=79 Identities=24% Similarity=0.290 Sum_probs=38.8
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
++|++|++++|.+++.. + +.++++|++|++++|.+..... +.++++|++|++++|.+...+ .+..+++|++
T Consensus 68 ~~L~~L~Ls~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~----~~~~l~~L~~ 138 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDIT-P-LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDID----PLKNLTNLNR 138 (466)
T ss_dssp TTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCG----GGTTCTTCSE
T ss_pred cCCCEEECCCCccCCch-h-hhccccCCEEECCCCccccChh---hcCCCCCCEEECCCCCCCCCh----HHcCCCCCCE
Confidence 45666666666655432 2 5555566666665554443332 344555555555555444332 1334444444
Q ss_pred EEccCCcc
Q 040144 82 LRLSNCQL 89 (289)
Q Consensus 82 L~l~~~~l 89 (289)
|++++|.+
T Consensus 139 L~l~~n~l 146 (466)
T 1o6v_A 139 LELSSNTI 146 (466)
T ss_dssp EEEEEEEE
T ss_pred EECCCCcc
Confidence 44444433
No 39
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=7.3e-28 Score=213.16 Aligned_cols=63 Identities=27% Similarity=0.270 Sum_probs=36.2
Q ss_pred CCCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCcccc
Q 040144 1 MGNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLS 64 (289)
Q Consensus 1 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 64 (289)
+++|++|++++|.+++..|.+|+++++|++|++++|.+...+... +.++++|++|++++|.+.
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~ 111 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW-FGPLSSLKYLNLMGNPYQ 111 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHH-HTTCTTCCEEECTTCCCS
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHH-hccCCCCcEEECCCCccc
Confidence 356666666666666655566666666666666666544433221 345555555555555544
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=7.4e-27 Score=193.97 Aligned_cols=261 Identities=16% Similarity=0.157 Sum_probs=210.8
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
+++++|++++|.+++..+..|.++++|++|++++|.+....+.. +.++++|++|++++|.+...+. .+. ++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~l~~---~~~--~~L~~ 127 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA-FSPLRKLQKLYISKNHLVEIPP---NLP--SSLVE 127 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG-STTCTTCCEEECCSSCCCSCCS---SCC--TTCCE
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH-hhCcCCCCEEECCCCcCCccCc---ccc--ccCCE
Confidence 57899999999999877888999999999999999877664433 7889999999999999887654 222 78999
Q ss_pred EEccCCccCCCCcccccCCCCCcEEeccCCCCCC-cchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCC
Q 040144 82 LRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDN-SFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSL 160 (289)
Q Consensus 82 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 160 (289)
|++++|.+....+..+..+++|+.|++++|.++. ...+..+..+ +|++|++++|.+. .+ +..+. ++|++|++++
T Consensus 128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l-~~~~~--~~L~~L~l~~ 202 (332)
T 2ft3_A 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GI-PKDLP--ETLNELHLDH 202 (332)
T ss_dssp EECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SC-CSSSC--SSCSCCBCCS
T ss_pred EECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-cc-Ccccc--CCCCEEECCC
Confidence 9999999998877778999999999999998852 1334445555 8999999999987 45 44433 7899999999
Q ss_pred CCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCce-------EEEeecc
Q 040144 161 NTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF-------ELHIYDN 232 (289)
Q Consensus 161 n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~-------~L~l~~n 232 (289)
|. +.+..+..+. +++|+.|++ ++|.+.+..+.++..+++|+.|++++|.++ .+|..+ .|++++|
T Consensus 203 n~-i~~~~~~~l~~l~~L~~L~L------~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 203 NK-IQAIELEDLLRYSKLYRLGL------GHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp SC-CCCCCTTSSTTCTTCSCCBC------CSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSS
T ss_pred Cc-CCccCHHHhcCCCCCCEEEC------CCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCC
Confidence 98 7766667777 889998886 899999888888999999999999999998 555544 8999999
Q ss_pred eeeeeeccccccc------cccccEEEecCCeee--eccCCCccccccccEEeccccc
Q 040144 233 KLNVTLFELHFAN------LIEMSWFRVGGNQLT--LEVKHDWIPHFQLVALGLHSCY 282 (289)
Q Consensus 233 ~~~~~~~~~~~~~------~~~L~~l~l~~n~~~--~~~~~~~~~~~~L~~l~l~~n~ 282 (289)
.+++ ++...+.. ...|+.+++.+|++. +..+..+..+++|+.+++++|+
T Consensus 275 ~l~~-~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 275 NITK-VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCCB-CCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCCc-cChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 9984 54435544 467999999999887 5566778899999999999885
No 41
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1.1e-26 Score=201.44 Aligned_cols=262 Identities=24% Similarity=0.352 Sum_probs=151.2
Q ss_pred CCCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchh-----------
Q 040144 1 MGNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDW----------- 69 (289)
Q Consensus 1 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----------- 69 (289)
+++|++|++++|.+++..+ +.++++|++|++++|.+...+. +.++++|++|++++|.+...+.+
T Consensus 89 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 163 (466)
T 1o6v_A 89 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 163 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEE
T ss_pred cccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH---HcCCCCCCEEECCCCccCCChhhccCCcccEeec
Confidence 4678888888888775433 7888888888888877655543 56677777777777766553211
Q ss_pred ------hHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeC
Q 040144 70 ------LMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTID 143 (289)
Q Consensus 70 ------~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 143 (289)
...+..+++|++|++++|.+... ..+..+++|+.|++++|.++ ...+ ++.+++|++|++++|.+.+ +
T Consensus 164 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~-~- 236 (466)
T 1o6v_A 164 GNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQIS-DITP--LGILTNLDELSLNGNQLKD-I- 236 (466)
T ss_dssp EESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCC-C-
T ss_pred CCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccc-cccc--ccccCCCCEEECCCCCccc-c-
Confidence 01234455666666666655543 23455555666666555554 2111 3344555555555554441 2
Q ss_pred hhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccc----------------cccccCCcccccccccccCCCC
Q 040144 144 LEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQE----------------SLDMRSSSIYGHLTDQLGQFRN 206 (289)
Q Consensus 144 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~----------------~l~l~~~~~~~~~~~~l~~~~~ 206 (289)
..+..+++|++|++++|. +.+..+ +. +++|+.|++++ .+++++|.+.+..+ ++.+++
T Consensus 237 -~~l~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~ 310 (466)
T 1o6v_A 237 -GTLASLTNLTDLDLANNQ-ISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKN 310 (466)
T ss_dssp -GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG--GGGCTT
T ss_pred -hhhhcCCCCCEEECCCCc-cccchh--hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh--hcCCCC
Confidence 234444555555555554 332211 33 44444444321 12235566654433 556667
Q ss_pred CcEEEccCCeeeecCC-----CceEEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCccccccccEEecccc
Q 040144 207 LVTFNLVNNSIVGFIP-----WSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSC 281 (289)
Q Consensus 207 L~~L~l~~n~~~~~~~-----~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 281 (289)
|+.|++++|.+.+..| ....|++++|.+++ + . .+.++++|+.|++++|++++..| +..+++|+.|++++|
T Consensus 311 L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~-~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 311 LTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD-V-S-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385 (466)
T ss_dssp CSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCC-C-G-GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred CCEEECcCCcCCCchhhccCccCCEeECCCCccCC-c-h-hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence 7777777776665433 11167777777763 3 2 46677777777777777776554 677777777777777
Q ss_pred cCcc
Q 040144 282 YIGS 285 (289)
Q Consensus 282 ~~~~ 285 (289)
.+++
T Consensus 386 ~~~~ 389 (466)
T 1o6v_A 386 AWTN 389 (466)
T ss_dssp EEEC
T ss_pred cccC
Confidence 7764
No 42
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=4.1e-28 Score=214.77 Aligned_cols=275 Identities=20% Similarity=0.180 Sum_probs=194.0
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
+++++|++++|.+++..|..|.++++|++|++++|.+....+.. +.++++|++|++++|.+...++ ..+..+++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA-FYSLGSLEHLDLSDNHLSSLSS--SWFGPLSSLKY 102 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTSCCCSCCH--HHHTTCTTCCE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh-ccccccCCEEECCCCccCccCH--HHhccCCCCcE
Confidence 47999999999999888889999999999999999877666443 7889999999999999888753 25889999999
Q ss_pred EEccCCccCCC-CcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcC-----------
Q 040144 82 LRLSNCQLQHF-SPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGN----------- 149 (289)
Q Consensus 82 L~l~~~~l~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~----------- 149 (289)
|++++|.+... .+..++.+++|++|++++|.+.....+..+..+++|++|++++|.+.+.. +..++.
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ-SQSLKSIRDIHHLTLHL 181 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC-TTTTTTCSEEEEEEEEC
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccC-hhhhhccccCceEeccc
Confidence 99999999864 34578899999999999997431333356778899999999999887654 555544
Q ss_pred -------------CCCccEEeCCCCCcccCCC--Ccccc--ccCcceeeccc----------------------------
Q 040144 150 -------------LTSINRLDLSLNTGLTGRI--PRSMA--LCNLKSINLQE---------------------------- 184 (289)
Q Consensus 150 -------------~~~L~~L~l~~n~~~~~~~--~~~~~--~~~L~~L~l~~---------------------------- 184 (289)
+++|++|++++|. +.+.. |..+. +++|+.|++.+
T Consensus 182 n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~ 260 (549)
T 2z81_A 182 SESAFLLEIFADILSSVRYLELRDTN-LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260 (549)
T ss_dssp SBSTTHHHHHHHSTTTBSEEEEESCB-CTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEES
T ss_pred CcccccchhhHhhcccccEEEccCCc-cccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccc
Confidence 4556666666665 43210 11111 22233222211
Q ss_pred -----------------------------------------------------cccccCCcccccccccc-cCCCCCcEE
Q 040144 185 -----------------------------------------------------SLDMRSSSIYGHLTDQL-GQFRNLVTF 210 (289)
Q Consensus 185 -----------------------------------------------------~l~l~~~~~~~~~~~~l-~~~~~L~~L 210 (289)
.+++++|.+. .+|..+ +.+++|+.|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L 339 (549)
T 2z81_A 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFL 339 (549)
T ss_dssp CEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEE
T ss_pred ccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEE
Confidence 1222333333 233333 467888888
Q ss_pred EccCCeeeecC----------CCceEEEeecceeeeeecc--ccccccccccEEEecCCeeeeccCCCccccccccEEec
Q 040144 211 NLVNNSIVGFI----------PWSFELHIYDNKLNVTLFE--LHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGL 278 (289)
Q Consensus 211 ~l~~n~~~~~~----------~~~~~L~l~~n~~~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 278 (289)
++++|.+.+.+ +....|++++|.+++ ++. ..+..+++|++|++++|+++ .+|..+..+++|+.|++
T Consensus 340 ~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~L 417 (549)
T 2z81_A 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS-MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNL 417 (549)
T ss_dssp ECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC-HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEEC
T ss_pred EccCCccccccccchhhhhccccCcEEEccCCcccc-cccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEEC
Confidence 88888887543 222278888888873 331 25777888888888888888 46777777777888888
Q ss_pred ccccCc
Q 040144 279 HSCYIG 284 (289)
Q Consensus 279 ~~n~~~ 284 (289)
++|+++
T Consensus 418 s~N~l~ 423 (549)
T 2z81_A 418 SSTGIR 423 (549)
T ss_dssp TTSCCS
T ss_pred CCCCcc
Confidence 887775
No 43
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.7e-26 Score=197.68 Aligned_cols=246 Identities=21% Similarity=0.218 Sum_probs=174.9
Q ss_pred cEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEc
Q 040144 5 RYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRL 84 (289)
Q Consensus 5 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 84 (289)
+.++..+..++ .+|..+. ++++.|++++|.+....... +.++++|++|++++|.+..... ..+..+++|++|++
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~i~~--~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNS-FKHLRHLEILQLSRNHIRTIEI--GAFNGLANLNTLEL 119 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTT-TSSCSSCCEEECCSSCCCEECG--GGGTTCSSCCEEEC
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHH-hhCCCCCCEEECCCCcCCccCh--hhccCCccCCEEEC
Confidence 45555555555 3554443 57788888887766665433 6778888888888887776532 25677888888888
Q ss_pred cCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcc
Q 040144 85 SNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGL 164 (289)
Q Consensus 85 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 164 (289)
++|.++...+..+..+++|+.|++++|.++ ...+..+..+++|++|++++|+..+.+++..|..+++|++|++++|. +
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l 197 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-L 197 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-C
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-C
Confidence 888888776667778888888888888876 44444566778888888887554445545577788888888888887 5
Q ss_pred cCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCceEEEeecceeeeeeccccc
Q 040144 165 TGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHF 243 (289)
Q Consensus 165 ~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~ 243 (289)
. .+|. +. +++|+.|++ ++|.+++..+..+..+++|+.|++++|.+++. .+. .+
T Consensus 198 ~-~~~~-~~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------------~~~-~~ 251 (440)
T 3zyj_A 198 R-EIPN-LTPLIKLDELDL------SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI-----------------ERN-AF 251 (440)
T ss_dssp S-SCCC-CTTCSSCCEEEC------TTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-----------------CTT-SS
T ss_pred c-cccc-cCCCcccCEEEC------CCCccCccChhhhccCccCCEEECCCCceeEE-----------------Chh-hh
Confidence 4 4443 44 777777775 77888777777888888888888888777632 233 67
Q ss_pred cccccccEEEecCCeeeeccCCCccccccccEEecccccCc
Q 040144 244 ANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIG 284 (289)
Q Consensus 244 ~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~ 284 (289)
.++++|+.|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 252 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 252 DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred cCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 77788888888888887665566777778888888877653
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=4.7e-27 Score=194.59 Aligned_cols=231 Identities=17% Similarity=0.133 Sum_probs=122.4
Q ss_pred CCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEE
Q 040144 3 NLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVEL 82 (289)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 82 (289)
++++|++++|.++ .+|+.++++++|++|++++|.+..++. .+.++++|++|++++|.+...+. .+..+++|++|
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~--~~~~l~~L~~L~Ls~n~l~~lp~---~l~~l~~L~~L 155 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPD--TMQQFAGLETLTLARNPLRALPA---SIASLNRLREL 155 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCCS--CGGGGTTCSEEEEESCCCCCCCG---GGGGCTTCCEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchhH--HHhccCCCCEEECCCCccccCcH---HHhcCcCCCEE
Confidence 4455555555554 344445555555555555554442221 13445555555555554443332 44445555555
Q ss_pred EccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCC
Q 040144 83 RLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNT 162 (289)
Q Consensus 83 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 162 (289)
++++|.+....+..+.. . .....+..+++|++|++++|.+. .+ |..++.+++|++|++++|.
T Consensus 156 ~L~~n~~~~~~p~~~~~------~----------~~~~~~~~l~~L~~L~L~~n~l~-~l-p~~l~~l~~L~~L~L~~N~ 217 (328)
T 4fcg_A 156 SIRACPELTELPEPLAS------T----------DASGEHQGLVNLQSLRLEWTGIR-SL-PASIANLQNLKSLKIRNSP 217 (328)
T ss_dssp EEEEETTCCCCCSCSEE------E----------C-CCCEEESTTCCEEEEEEECCC-CC-CGGGGGCTTCCEEEEESSC
T ss_pred ECCCCCCccccChhHhh------c----------cchhhhccCCCCCEEECcCCCcC-cc-hHhhcCCCCCCEEEccCCC
Confidence 55554443333322221 0 00001123556666666666655 44 4556666666666666665
Q ss_pred cccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCceEEEeecceeeeeeccc
Q 040144 163 GLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFEL 241 (289)
Q Consensus 163 ~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~ 241 (289)
+. .+|..+. +++|+.|++ ++|.+.+.+|..++.+++|+.|++++|.+.+ .+|.
T Consensus 218 -l~-~l~~~l~~l~~L~~L~L------s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-----------------~~p~- 271 (328)
T 4fcg_A 218 -LS-ALGPAIHHLPKLEELDL------RGCTALRNYPPIFGGRAPLKRLILKDCSNLL-----------------TLPL- 271 (328)
T ss_dssp -CC-CCCGGGGGCTTCCEEEC------TTCTTCCBCCCCTTCCCCCCEEECTTCTTCC-----------------BCCT-
T ss_pred -CC-cCchhhccCCCCCEEEC------cCCcchhhhHHHhcCCCCCCEEECCCCCchh-----------------hcch-
Confidence 44 3444455 566665554 5556666666666666666666666655542 3444
Q ss_pred cccccccccEEEecCCeeeeccCCCccccccccEEecccccC
Q 040144 242 HFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYI 283 (289)
Q Consensus 242 ~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~ 283 (289)
.+.++++|+.|++++|++.+.+|..++.+++++.+++..+.+
T Consensus 272 ~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 556666666666666666666666666666666666665544
No 45
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3e-26 Score=198.03 Aligned_cols=246 Identities=20% Similarity=0.182 Sum_probs=169.1
Q ss_pred cEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEc
Q 040144 5 RYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRL 84 (289)
Q Consensus 5 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 84 (289)
+.++..+..++ .+|..+. +++++|++++|.+....... +.++++|++|++++|.+..... ..+..+++|++|++
T Consensus 57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADT-FRHLHHLEVLQLGRNSIRQIEV--GAFNGLASLNTLEL 130 (452)
T ss_dssp CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCEECT--TTTTTCTTCCEEEC
T ss_pred cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHH-cCCCCCCCEEECCCCccCCcCh--hhccCcccCCEEEC
Confidence 34555555554 3444332 57778888877766554433 6677788888888877766532 25667778888888
Q ss_pred cCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcc
Q 040144 85 SNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGL 164 (289)
Q Consensus 85 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 164 (289)
++|.++...+..+..+++|++|++++|.++ ...+..+..+++|++|++++|+..+.+++..+..+++|++|++++|. +
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l 208 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-I 208 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-C
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-c
Confidence 888777776666777788888888888776 33344566777888888877544435545567777788888888877 5
Q ss_pred cCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCceEEEeecceeeeeeccccc
Q 040144 165 TGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHF 243 (289)
Q Consensus 165 ~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~ 243 (289)
. .+| .+. +++|+.|++ ++|.+++..+..+..+++|+.|++++|.+.+ ..+. .+
T Consensus 209 ~-~~~-~~~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~~-~~ 262 (452)
T 3zyi_A 209 K-DMP-NLTPLVGLEELEM------SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL-----------------IERN-AF 262 (452)
T ss_dssp S-SCC-CCTTCTTCCEEEC------TTSCCSEECGGGGTTCTTCCEEECTTSCCCE-----------------ECTT-TT
T ss_pred c-ccc-cccccccccEEEC------cCCcCcccCcccccCccCCCEEEeCCCcCce-----------------ECHH-Hh
Confidence 4 334 344 777777765 7777777777777778888888877777662 2333 67
Q ss_pred cccccccEEEecCCeeeeccCCCccccccccEEecccccCc
Q 040144 244 ANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIG 284 (289)
Q Consensus 244 ~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~ 284 (289)
.++++|+.|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 263 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 263 DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 77888888888888888666566777888888888888654
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=6e-27 Score=192.35 Aligned_cols=231 Identities=19% Similarity=0.232 Sum_probs=189.9
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCC-CcccCCCCcccEEeccCccccccchhhHhhhcCCCcc
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDN-FLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLV 80 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 80 (289)
+++++|++++|.++...+..|.++++|++|++++|.+...+. ...+..+++|++|++++|.+...+. .+..+++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~---~~~~l~~L~ 104 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS---NFLGLEQLE 104 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEE---EEETCTTCC
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChh---hcCCCCCCC
Confidence 579999999999986555568999999999999988664421 1114568999999999999887655 577899999
Q ss_pred EEEccCCccCCCCc-ccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeee-eeChhhhcCCCCccEEeC
Q 040144 81 ELRLSNCQLQHFSP-LATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQG-TIDLEALGNLTSINRLDL 158 (289)
Q Consensus 81 ~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~~L~~L~l 158 (289)
+|++++|.+....+ ..+..+++|+.|++++|.+. ...+..+..+++|++|++++|.+.+ .. +..+..+++|++|++
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~L 182 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFL-PDIFTELRNLTFLDL 182 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE-ECSTTTTTTCTTCCEEECTTCEEGGGEE-CSCCTTCTTCCEEEC
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCC-ccchhhcccCcCCCEEECCCCccccccc-hhHHhhCcCCCEEEC
Confidence 99999999988755 57888999999999999987 5566667889999999999999975 34 778899999999999
Q ss_pred CCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCceEEEeecceeeee
Q 040144 159 SLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVT 237 (289)
Q Consensus 159 ~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~ 237 (289)
++|. +.+..|..+. +++|+.|++ ++|.+++..+..+..+++|+.|++++|.+.+..|
T Consensus 183 s~n~-l~~~~~~~~~~l~~L~~L~L------~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------------- 240 (306)
T 2z66_A 183 SQCQ-LEQLSPTAFNSLSSLQVLNM------SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK--------------- 240 (306)
T ss_dssp TTSC-CCEECTTTTTTCTTCCEEEC------TTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS---------------
T ss_pred CCCC-cCCcCHHHhcCCCCCCEEEC------CCCccCccChhhccCcccCCEeECCCCCCcccCH---------------
Confidence 9999 7766677888 999999987 8999998877789999999999999998885433
Q ss_pred ecccccccc-ccccEEEecCCeeeec
Q 040144 238 LFELHFANL-IEMSWFRVGGNQLTLE 262 (289)
Q Consensus 238 ~~~~~~~~~-~~L~~l~l~~n~~~~~ 262 (289)
. .+..+ ++|++|++++|++...
T Consensus 241 --~-~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 241 --Q-ELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp --S-SCCCCCTTCCEEECTTCCEECS
T ss_pred --H-HHHhhhccCCEEEccCCCeecc
Confidence 2 44555 3777777777777653
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=9.5e-27 Score=192.74 Aligned_cols=206 Identities=23% Similarity=0.250 Sum_probs=173.7
Q ss_pred CCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCC
Q 040144 50 ISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLP 129 (289)
Q Consensus 50 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 129 (289)
...++.|+++++.+...+. .+..+++|++|++++|.+. ..+..++.+++|++|++++|.++ .++..++.+++|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~---~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPD---QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLR 153 (328)
T ss_dssp STTCCEEEEESSCCSSCCS---CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCC
T ss_pred ccceeEEEccCCCchhcCh---hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCC
Confidence 4678888888888876655 5667888999999999888 44667788899999999998886 5677788889999
Q ss_pred EEEccCceeeeeeChhhhc---------CCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccc
Q 040144 130 FLDLGFNNFQGTIDLEALG---------NLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTD 199 (289)
Q Consensus 130 ~L~l~~n~~~~~~~~~~~~---------~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~ 199 (289)
+|++++|+..+.+ |..+. .+++|++|++++|. +. .+|..+. +++|++|++ ++|.+.+ +|.
T Consensus 154 ~L~L~~n~~~~~~-p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~-~lp~~l~~l~~L~~L~L------~~N~l~~-l~~ 223 (328)
T 4fcg_A 154 ELSIRACPELTEL-PEPLASTDASGEHQGLVNLQSLRLEWTG-IR-SLPASIANLQNLKSLKI------RNSPLSA-LGP 223 (328)
T ss_dssp EEEEEEETTCCCC-CSCSEEEC-CCCEEESTTCCEEEEEEEC-CC-CCCGGGGGCTTCCEEEE------ESSCCCC-CCG
T ss_pred EEECCCCCCcccc-ChhHhhccchhhhccCCCCCEEECcCCC-cC-cchHhhcCCCCCCEEEc------cCCCCCc-Cch
Confidence 9999988776666 55444 49999999999998 66 7888888 999999987 8899985 555
Q ss_pred cccCCCCCcEEEccCCeeeecCCCceEEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCccccccccEEecc
Q 040144 200 QLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLH 279 (289)
Q Consensus 200 ~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~ 279 (289)
.+..+++|+.|++++|.+.+ .+|. .++++++|+.|++++|.+.+.+|..+..+++|+.|+++
T Consensus 224 ~l~~l~~L~~L~Ls~n~~~~-----------------~~p~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 285 (328)
T 4fcg_A 224 AIHHLPKLEELDLRGCTALR-----------------NYPP-IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285 (328)
T ss_dssp GGGGCTTCCEEECTTCTTCC-----------------BCCC-CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred hhccCCCCCEEECcCCcchh-----------------hhHH-HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCC
Confidence 78999999999999987773 4555 78899999999999999999999999999999999999
Q ss_pred cccCccCCCC
Q 040144 280 SCYIGSRFPL 289 (289)
Q Consensus 280 ~n~~~~~~p~ 289 (289)
+|++.+.+|+
T Consensus 286 ~n~~~~~iP~ 295 (328)
T 4fcg_A 286 GCVNLSRLPS 295 (328)
T ss_dssp TCTTCCCCCG
T ss_pred CCCchhhccH
Confidence 9999999884
No 48
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.6e-26 Score=186.70 Aligned_cols=199 Identities=18% Similarity=0.165 Sum_probs=118.0
Q ss_pred cEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEc
Q 040144 5 RYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRL 84 (289)
Q Consensus 5 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 84 (289)
++++..++.++. +|..+ .+++++|++++|.+...+... +..+++|++|++++|.+....+ ..+..+++|++|++
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l 87 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAAS-FRACRNLTILWLHSNVLARIDA--AAFTGLALLEQLDL 87 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCEECT--TTTTTCTTCCEEEC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHH-cccCCCCCEEECCCCccceeCH--hhcCCccCCCEEeC
Confidence 345555555542 33322 346666777666655544332 4566667777776666655421 14556666777777
Q ss_pred cCCc-cCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCc
Q 040144 85 SNCQ-LQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTG 163 (289)
Q Consensus 85 ~~~~-l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~ 163 (289)
++|. +....+..+..+++|++|++++|.++ ...+..+..+++|++|++++|.+. .+++..++.+++|++|++++|.
T Consensus 88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~- 164 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNR- 164 (285)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-
T ss_pred CCCCCccccCHHHhcCCcCCCEEECCCCcCC-EECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCc-
Confidence 6665 55555556666666777777666665 333445556666777777666665 3324456666667777776666
Q ss_pred ccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeee
Q 040144 164 LTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIV 218 (289)
Q Consensus 164 ~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 218 (289)
+.+..+..+. +++|+.|++ ++|.+.+..+..++.+++|+.|++++|.++
T Consensus 165 l~~~~~~~~~~l~~L~~L~l------~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 165 ISSVPERAFRGLHSLDRLLL------HQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp CCEECTTTTTTCTTCCEEEC------CSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ccccCHHHhcCccccCEEEC------CCCcccccCHhHccCcccccEeeCCCCcCC
Confidence 4433333455 666666664 666666666666666666777766666665
No 49
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=5.5e-26 Score=202.82 Aligned_cols=265 Identities=18% Similarity=0.209 Sum_probs=208.5
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
++++.+++.++.++...+..+..+++|++|++++|.+...++.. +..+++|++|++++|.+...++ ..+..+++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~ 127 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA-FAYAHTIQKLYMGFNAIRYLPP--HVFQNVPLLTV 127 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHH-hcCCCCCCEEECCCCcCCCCCH--HHHcCCCCCCE
Confidence 57889999999988766666788999999999999877665443 7889999999999999888743 25688999999
Q ss_pred EEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCC
Q 040144 82 LRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLN 161 (289)
Q Consensus 82 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 161 (289)
|++++|.+....+..++.+++|+.|++++|.++ ...+..++.+++|++|++++|.+.+ + .++.+++|+.+++++|
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~-~---~~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH-V---DLSLIPSLFHANVSYN 202 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSB-C---CGGGCTTCSEEECCSS
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC-CCChhhhhcCCcCcEEECcCCCCCC-c---ChhhhhhhhhhhcccC
Confidence 999999999887777889999999999999997 5566678889999999999999873 3 2345666777777666
Q ss_pred CcccCCCCcccc-ccCcceeeccc---------------cccccCCcccccccccccCCCCCcEEEccCCeeeecCCCce
Q 040144 162 TGLTGRIPRSMA-LCNLKSINLQE---------------SLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF 225 (289)
Q Consensus 162 ~~~~~~~~~~~~-~~~L~~L~l~~---------------~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~ 225 (289)
. +.+ +. .+.|+.|+++. .+++++|.+++ +..+..+++|+.|++++|.+.+..|..+
T Consensus 203 ~-l~~-----l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 203 L-LST-----LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp C-CSE-----EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred c-ccc-----ccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHh
Confidence 5 331 11 22333333221 23347888875 3568889999999999999987766555
Q ss_pred -------EEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCccccccccEEecccccCcc
Q 040144 226 -------ELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIGS 285 (289)
Q Consensus 226 -------~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 285 (289)
.|++++|.+++ ++. .+..+++|+.|++++|++.+ +|..+..+++|+.|++++|.+++
T Consensus 275 ~~l~~L~~L~Ls~N~l~~-l~~-~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVA-LNL-YGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp TTCSSCCEEECTTSCCCE-EEC-SSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCC
T ss_pred cCccCCCEEECCCCCCCC-CCc-ccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCC
Confidence 89999999984 676 67788999999999999984 77788889999999999999874
No 50
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.6e-27 Score=195.37 Aligned_cols=236 Identities=18% Similarity=0.205 Sum_probs=147.5
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
++|++|++++|.+++..|..+.++++|++|++++|.+....+ +..+++|++|++++|.+...+. .++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~l~~-------~~~L~~ 103 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV-------GPSIET 103 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEEEEEE-------CTTCCE
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCccccccC-------CCCcCE
Confidence 456777777777766555667777777777777766554432 5567777777777776655432 256777
Q ss_pred EEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhh-cCCCCccEEeCCC
Q 040144 82 LRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEAL-GNLTSINRLDLSL 160 (289)
Q Consensus 82 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~~L~~L~l~~ 160 (289)
|++++|.+....+ ..+++|+.|++++|.++ ...+..+..+++|++|++++|.+.+.. +..+ ..+++|++|++++
T Consensus 104 L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 104 LHAANNNISRVSC---SRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVN-FAELAASSDTLEHLNLQY 178 (317)
T ss_dssp EECCSSCCSEEEE---CCCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCCEEE-GGGGGGGTTTCCEEECTT
T ss_pred EECCCCccCCcCc---cccCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCCccc-HHHHhhccCcCCEEECCC
Confidence 7777777665432 23566777777777775 333444556677777777777766433 4444 3567777777777
Q ss_pred CCcccCCCCccccccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCceEEEeecceeeeeecc
Q 040144 161 NTGLTGRIPRSMALCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFE 240 (289)
Q Consensus 161 n~~~~~~~~~~~~~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~ 240 (289)
|. +.+. +....+++|+.|++ ++|.+++..+ .+..+++|+.|++++|.++ .+|.
T Consensus 179 N~-l~~~-~~~~~l~~L~~L~L------s~N~l~~l~~-~~~~l~~L~~L~L~~N~l~------------------~l~~ 231 (317)
T 3o53_A 179 NF-IYDV-KGQVVFAKLKTLDL------SSNKLAFMGP-EFQSAAGVTWISLRNNKLV------------------LIEK 231 (317)
T ss_dssp SC-CCEE-ECCCCCTTCCEEEC------CSSCCCEECG-GGGGGTTCSEEECTTSCCC------------------EECT
T ss_pred Cc-Cccc-ccccccccCCEEEC------CCCcCCcchh-hhcccCcccEEECcCCccc------------------chhh
Confidence 76 4422 22222566666665 6666664433 3666677777777766665 4555
Q ss_pred ccccccccccEEEecCCeee-eccCCCccccccccEEeccc
Q 040144 241 LHFANLIEMSWFRVGGNQLT-LEVKHDWIPHFQLVALGLHS 280 (289)
Q Consensus 241 ~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~~L~~l~l~~ 280 (289)
.+..+++|+.|++++|++. +..+..+..+++|+.+++++
T Consensus 232 -~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 232 -ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp -TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred -HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 5666677777777777776 44555566666666666663
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1.4e-25 Score=193.26 Aligned_cols=228 Identities=25% Similarity=0.271 Sum_probs=191.6
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
++++.|+|++|.+++..+..|.++++|++|++++|.+....... +.++++|++|++++|.+...+. ..+..+++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~ 140 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA-FNGLANLNTLELFDNRLTTIPN--GAFVYLSKLKE 140 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGG-GTTCSSCCEEECCSSCCSSCCT--TTSCSCSSCCE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhh-ccCCccCCEEECCCCcCCeeCH--hHhhccccCce
Confidence 46899999999999888899999999999999999877665443 7889999999999999887643 25788999999
Q ss_pred EEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCC
Q 040144 82 LRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLN 161 (289)
Q Consensus 82 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 161 (289)
|++++|.+....+..+..+++|+.|++++|..........+..+++|++|++++|.+. .+ + .+..+++|++|++++|
T Consensus 141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~-~-~~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EI-P-NLTPLIKLDELDLSGN 217 (440)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SC-C-CCTTCSSCCEEECTTS
T ss_pred eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cc-c-ccCCCcccCEEECCCC
Confidence 9999999998877788999999999999854331333446778999999999999987 55 3 4788999999999999
Q ss_pred CcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCceEEEeecceeeeeecc
Q 040144 162 TGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFE 240 (289)
Q Consensus 162 ~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~ 240 (289)
. +.+..|..+. +++|+.|++ ++|.+.+..+.++..+++|+.|++++|.++ .++.
T Consensus 218 ~-l~~~~~~~~~~l~~L~~L~L------~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~------------------~~~~ 272 (440)
T 3zyj_A 218 H-LSAIRPGSFQGLMHLQKLWM------IQSQIQVIERNAFDNLQSLVEINLAHNNLT------------------LLPH 272 (440)
T ss_dssp C-CCEECTTTTTTCTTCCEEEC------TTCCCCEECTTSSTTCTTCCEEECTTSCCC------------------CCCT
T ss_pred c-cCccChhhhccCccCCEEEC------CCCceeEEChhhhcCCCCCCEEECCCCCCC------------------ccCh
Confidence 9 7777778888 999999987 899999888999999999999999999888 2333
Q ss_pred ccccccccccEEEecCCeee
Q 040144 241 LHFANLIEMSWFRVGGNQLT 260 (289)
Q Consensus 241 ~~~~~~~~L~~l~l~~n~~~ 260 (289)
..+..+++|+.|++++|++.
T Consensus 273 ~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 273 DLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTTSSCTTCCEEECCSSCEE
T ss_pred hHhccccCCCEEEcCCCCcc
Confidence 35667778888888887764
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.5e-25 Score=193.77 Aligned_cols=228 Identities=24% Similarity=0.259 Sum_probs=191.3
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
+++++|+|++|.+++..+..|.++++|++|++++|.+....... +.++++|++|++++|.+...+. ..+..+++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA-FNGLASLNTLELFDNWLTVIPS--GAFEYLSKLRE 151 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCSBCCT--TTSSSCTTCCE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhh-ccCcccCCEEECCCCcCCccCh--hhhcccCCCCE
Confidence 47899999999999888999999999999999999877666443 7889999999999999887743 25778999999
Q ss_pred EEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCC
Q 040144 82 LRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLN 161 (289)
Q Consensus 82 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 161 (289)
|++++|.+....+..+..+++|+.|++++|..........+..+++|++|++++|.+. .+ + .+..+++|++|++++|
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~-~-~~~~l~~L~~L~Ls~N 228 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DM-P-NLTPLVGLEELEMSGN 228 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SC-C-CCTTCTTCCEEECTTS
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-cc-c-cccccccccEEECcCC
Confidence 9999999998877788999999999999854331333445778999999999999997 44 3 5778999999999999
Q ss_pred CcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCceEEEeecceeeeeecc
Q 040144 162 TGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFE 240 (289)
Q Consensus 162 ~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~ 240 (289)
. +.+..|..+. +++|+.|++ ++|.+.+..+..+..+++|+.|++++|.+++ ++.
T Consensus 229 ~-l~~~~~~~~~~l~~L~~L~L------~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------~~~ 283 (452)
T 3zyi_A 229 H-FPEIRPGSFHGLSSLKKLWV------MNSQVSLIERNAFDGLASLVELNLAHNNLSS------------------LPH 283 (452)
T ss_dssp C-CSEECGGGGTTCTTCCEEEC------TTSCCCEECTTTTTTCTTCCEEECCSSCCSC------------------CCT
T ss_pred c-CcccCcccccCccCCCEEEe------CCCcCceECHHHhcCCCCCCEEECCCCcCCc------------------cCh
Confidence 9 7777777888 999999987 8999998889999999999999999998882 333
Q ss_pred ccccccccccEEEecCCeee
Q 040144 241 LHFANLIEMSWFRVGGNQLT 260 (289)
Q Consensus 241 ~~~~~~~~L~~l~l~~n~~~ 260 (289)
..+..+++|+.|++++|++.
T Consensus 284 ~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 284 DLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TSSTTCTTCCEEECCSSCEE
T ss_pred HHhccccCCCEEEccCCCcC
Confidence 35667777888888877764
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=8.7e-25 Score=196.45 Aligned_cols=111 Identities=28% Similarity=0.298 Sum_probs=81.5
Q ss_pred CCCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCcc
Q 040144 1 MGNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLV 80 (289)
Q Consensus 1 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 80 (289)
+++|++|+|++|.+++..+.+|.++++|++|++++|.+...+... +.++++|++|++++|.+...+. ..+..+++|+
T Consensus 75 l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~-f~~L~~L~~L~Ls~N~l~~l~~--~~~~~L~~L~ 151 (635)
T 4g8a_A 75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA-FSGLSSLQKLVAVETNLASLEN--FPIGHLKTLK 151 (635)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG-GTTCTTCCEEECTTSCCCCSTT--CCCTTCTTCC
T ss_pred CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH-hcCCCCCCEEECCCCcCCCCCh--hhhhcCcccC
Confidence 468889999998888777778888889999999888776655433 6778888888888887776543 1466777888
Q ss_pred EEEccCCccCCC-CcccccCCCCCcEEeccCCCCC
Q 040144 81 ELRLSNCQLQHF-SPLATVNFSSLTMLDLSHNQFD 114 (289)
Q Consensus 81 ~L~l~~~~l~~~-~~~~l~~~~~L~~L~l~~~~~~ 114 (289)
+|++++|.+... .+..++.+++|+.|++++|.++
T Consensus 152 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 152 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred eeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 888888777653 3455666777777777766553
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.7e-25 Score=181.92 Aligned_cols=205 Identities=25% Similarity=0.285 Sum_probs=140.1
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCcc-ccccchhhHhhhcCCCcc
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVN-LSIAFDWLMVANKLLSLV 80 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~ 80 (289)
+++++|++++|.+++..+..|..+++|++|++++|.+....+.. +.++++|++|++++|. +....+ ..+..+++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~l~~~~~--~~~~~l~~L~ 108 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA-FTGLALLEQLDLSDNAQLRSVDP--ATFHGLGRLH 108 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSCTTCCCCCT--TTTTTCTTCC
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhh-cCCccCCCEEeCCCCCCccccCH--HHhcCCcCCC
Confidence 46777777777777666666777777777777777655543332 5667777777777775 554421 2556677777
Q ss_pred EEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCC
Q 040144 81 ELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSL 160 (289)
Q Consensus 81 ~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 160 (289)
+|++++|.+....+..+..+++|++|++++|.++ ...+..+..+++|++|++++|.+. .+++..+..+++|++|++++
T Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred EEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCccc-ccCHHHhcCccccCEEECCC
Confidence 7777777777766666777777777777777775 333344566777777777777776 34245577777777777777
Q ss_pred CCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeee
Q 040144 161 NTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIV 218 (289)
Q Consensus 161 n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 218 (289)
|. +.+..|..+. +++|+.|++ ++|.+++..+..+..+++|+.|++++|.+.
T Consensus 187 n~-l~~~~~~~~~~l~~L~~L~l------~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 187 NR-VAHVHPHAFRDLGRLMTLYL------FANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp SC-CCEECTTTTTTCTTCCEEEC------CSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred Cc-ccccCHhHccCcccccEeeC------CCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 77 6655566666 777777765 677777666666777777777777777666
No 55
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=1.7e-25 Score=193.02 Aligned_cols=254 Identities=20% Similarity=0.187 Sum_probs=160.5
Q ss_pred CCCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCcc
Q 040144 1 MGNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLV 80 (289)
Q Consensus 1 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 80 (289)
+++|++|++++|.+++ .| .++.+++|++|++++|.+...+ +..+++|++|++++|.+... .+..+++|+
T Consensus 41 l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~l~~~-----~~~~l~~L~ 109 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNKLTNL-----DVTPLTKLT 109 (457)
T ss_dssp HTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCC-----CCTTCTTCC
T ss_pred cCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCCCCcee-----ecCCCCcCC
Confidence 3678888888888875 34 5888888888888888766653 66788888888888877664 256778888
Q ss_pred EEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCC
Q 040144 81 ELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSL 160 (289)
Q Consensus 81 ~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 160 (289)
+|++++|.++.. .++.+++|+.|++++|.++ . ++ ++.+++|++|++++|...+.+ .++.+++|++|++++
T Consensus 110 ~L~L~~N~l~~l---~~~~l~~L~~L~l~~N~l~-~-l~--l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 110 YLNCDTNKLTKL---DVSQNPLLTYLNCARNTLT-E-ID--VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSF 179 (457)
T ss_dssp EEECCSSCCSCC---CCTTCTTCCEEECTTSCCS-C-CC--CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCS
T ss_pred EEECCCCcCCee---cCCCCCcCCEEECCCCccc-e-ec--cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCC
Confidence 888888887764 2677788888888888776 2 22 455666777777666433232 244556666666666
Q ss_pred CCcccCCCCcccc-ccCcceeeccc---------------cccccCCcccccccccccCCCCCcEEEccCCeeeecCCCc
Q 040144 161 NTGLTGRIPRSMA-LCNLKSINLQE---------------SLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWS 224 (289)
Q Consensus 161 n~~~~~~~~~~~~-~~~L~~L~l~~---------------~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~ 224 (289)
|. +.+ +| +. +++|+.|+++. .+++++|.+++ +| ++.+++|+.|++++|.+++..+..
T Consensus 180 n~-l~~-l~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~ 252 (457)
T 3bz5_A 180 NK-ITE-LD--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVST 252 (457)
T ss_dssp SC-CCC-CC--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTT
T ss_pred Cc-cce-ec--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHH
Confidence 65 443 23 33 55555555421 22235666665 33 556666666666666665443222
Q ss_pred e--------------EEEeecceeeeeeccccccccccccEEEecCCeeeeccCC--------CccccccccEEeccccc
Q 040144 225 F--------------ELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKH--------DWIPHFQLVALGLHSCY 282 (289)
Q Consensus 225 ~--------------~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~--------~~~~~~~L~~l~l~~n~ 282 (289)
+ .+++++|.+.+.+|. +++++|+.|++++|+..+.+|. .+..+++|+.|++++|+
T Consensus 253 l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~---~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~ 329 (457)
T 3bz5_A 253 LSKLTTLHCIQTDLLEIDLTHNTQLIYFQA---EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE 329 (457)
T ss_dssp CTTCCEEECTTCCCSCCCCTTCTTCCEEEC---TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC
T ss_pred CCCCCEEeccCCCCCEEECCCCccCCcccc---cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc
Confidence 2 334444443334432 4567777777777765444432 24555677888888887
Q ss_pred Ccc
Q 040144 283 IGS 285 (289)
Q Consensus 283 ~~~ 285 (289)
+++
T Consensus 330 l~~ 332 (457)
T 3bz5_A 330 LTE 332 (457)
T ss_dssp CSC
T ss_pred ccc
Confidence 765
No 56
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=3.6e-25 Score=191.01 Aligned_cols=252 Identities=21% Similarity=0.204 Sum_probs=165.9
Q ss_pred CCCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCcc
Q 040144 1 MGNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLV 80 (289)
Q Consensus 1 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 80 (289)
+++|++|++++|.+++. + ++.+++|++|++++|.+...+ +.++++|++|++++|.+...+ +..+++|+
T Consensus 63 l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~~L~L~~N~l~~l~-----~~~l~~L~ 130 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCDTNKLTKLD-----VSQNPLLT 130 (457)
T ss_dssp CTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECCSSCCSCCC-----CTTCTTCC
T ss_pred cCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceee----cCCCCcCCEEECCCCcCCeec-----CCCCCcCC
Confidence 46777888888877753 3 677777777877777665543 566777777777777665531 45666666
Q ss_pred EEEccCCccCCCC-------------------cccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeee
Q 040144 81 ELRLSNCQLQHFS-------------------PLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGT 141 (289)
Q Consensus 81 ~L~l~~~~l~~~~-------------------~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 141 (289)
+|++++|.++... ...+..+++|+.|++++|.++ .++ +..+++|++|++++|.+++
T Consensus 131 ~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~--~l~--l~~l~~L~~L~l~~N~l~~- 205 (457)
T 3bz5_A 131 YLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT--ELD--VSQNKLLNRLNCDTNNITK- 205 (457)
T ss_dssp EEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCC--CCC--CTTCTTCCEEECCSSCCSC-
T ss_pred EEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccc--eec--cccCCCCCEEECcCCcCCe-
Confidence 7777666665531 002334455555555555554 122 4455666666666666652
Q ss_pred eChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCC-------CCcEEEcc
Q 040144 142 IDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFR-------NLVTFNLV 213 (289)
Q Consensus 142 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~-------~L~~L~l~ 213 (289)
+ .++.+++|++|++++|. +.+ +| +. +++|+.|++ ++|.+++..+..+..+. +|+.|+++
T Consensus 206 ~---~l~~l~~L~~L~Ls~N~-l~~-ip--~~~l~~L~~L~l------~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~ 272 (457)
T 3bz5_A 206 L---DLNQNIQLTFLDCSSNK-LTE-ID--VTPLTQLTYFDC------SVNPLTELDVSTLSKLTTLHCIQTDLLEIDLT 272 (457)
T ss_dssp C---CCTTCTTCSEEECCSSC-CSC-CC--CTTCTTCSEEEC------CSSCCSCCCCTTCTTCCEEECTTCCCSCCCCT
T ss_pred e---ccccCCCCCEEECcCCc-ccc-cC--ccccCCCCEEEe------eCCcCCCcCHHHCCCCCEEeccCCCCCEEECC
Confidence 2 25567777777777777 554 44 55 777777775 88999876544443333 44555555
Q ss_pred CCeeeecCCC-----ceEEEeecceeeeeecc-------ccccccccccEEEecCCeeeeccCCCccccccccEEecccc
Q 040144 214 NNSIVGFIPW-----SFELHIYDNKLNVTLFE-------LHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSC 281 (289)
Q Consensus 214 ~n~~~~~~~~-----~~~L~l~~n~~~~~~~~-------~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 281 (289)
+|.+.+.+|. ...|++++|...+.+|. ..+.++++|++|++++|++++ + .++.+++|+.|++++|
T Consensus 273 ~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l--~l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 273 HNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-L--DVSHNTKLKSLSCVNA 349 (457)
T ss_dssp TCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-C--CCTTCTTCSEEECCSS
T ss_pred CCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-c--ccccCCcCcEEECCCC
Confidence 5554444432 22889999987666654 124567899999999999998 3 3889999999999999
Q ss_pred cCcc
Q 040144 282 YIGS 285 (289)
Q Consensus 282 ~~~~ 285 (289)
++++
T Consensus 350 ~l~~ 353 (457)
T 3bz5_A 350 HIQD 353 (457)
T ss_dssp CCCB
T ss_pred CCCC
Confidence 9985
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=1.1e-25 Score=188.48 Aligned_cols=248 Identities=21% Similarity=0.215 Sum_probs=200.6
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
++|++|++++|.+++..+..+.++++|++|++++|.+....... +.++++|++|++++|.+...+. ..+..+++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS-FSSLGSLEHLDLSYNYLSNLSS--SWFKPLSSLTF 128 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCSSCCH--HHHTTCTTCSE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhh-cCCCCCCCEEECCCCcCCcCCH--hHhCCCccCCE
Confidence 47999999999999877778999999999999999877665433 7889999999999999987654 24788999999
Q ss_pred EEccCCccCCCCc-ccccCCCCCcEEeccCCC-CCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCC
Q 040144 82 LRLSNCQLQHFSP-LATVNFSSLTMLDLSHNQ-FDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLS 159 (289)
Q Consensus 82 L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 159 (289)
|++++|.+..... ..+..+++|+.|++++|. ++ ...+..+..+++|++|++++|.+.+.. +..++.+++|++|+++
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYE-PKSLKSIQNVSHLILH 206 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEEC-TTTTTTCSEEEEEEEE
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccC-HHHHhccccCCeecCC
Confidence 9999999998765 578899999999999984 54 444567788999999999999998655 7889999999999999
Q ss_pred CCCcccCCCCccc-c-ccCcceeeccccccccCCcccccccccc---cCCCCCcEEEccCCeeeec-----------CCC
Q 040144 160 LNTGLTGRIPRSM-A-LCNLKSINLQESLDMRSSSIYGHLTDQL---GQFRNLVTFNLVNNSIVGF-----------IPW 223 (289)
Q Consensus 160 ~n~~~~~~~~~~~-~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l---~~~~~L~~L~l~~n~~~~~-----------~~~ 223 (289)
+|. +. ..|..+ . +++|+.|++ ++|.+++..+..+ .....++.++++++.+.+. .+.
T Consensus 207 ~n~-l~-~~~~~~~~~~~~L~~L~L------~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~ 278 (353)
T 2z80_A 207 MKQ-HI-LLLEIFVDVTSSVECLEL------RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG 278 (353)
T ss_dssp CSC-ST-THHHHHHHHTTTEEEEEE------ESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTT
T ss_pred CCc-cc-cchhhhhhhcccccEEEC------CCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccC
Confidence 998 54 444443 3 788998887 7888876554433 2456788889988887652 233
Q ss_pred ceEEEeecceeeeeeccccccccccccEEEecCCeeeecc
Q 040144 224 SFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEV 263 (289)
Q Consensus 224 ~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 263 (289)
...|++++|.++ .+|...+.++++|++|++++|++.+..
T Consensus 279 L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 279 LLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 338999999998 688745689999999999999998653
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=6.9e-26 Score=197.14 Aligned_cols=235 Identities=18% Similarity=0.202 Sum_probs=163.5
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
++|++|+|++|.+++..|..|..+++|++|++++|.+....+ +..++.|++|++++|.+...+. .++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~-------~~~L~~ 103 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV-------GPSIET 103 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE-------CTTCCE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC-------CCCcCE
Confidence 467888888888877667778888888888888877654443 5677888888888887766542 267888
Q ss_pred EEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhc-CCCCccEEeCCC
Q 040144 82 LRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALG-NLTSINRLDLSL 160 (289)
Q Consensus 82 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~~L~~L~l~~ 160 (289)
|++++|.+....+. .+++|+.|++++|.++ ...+..++.+++|+.|++++|.+.+.. +..+. .+++|+.|++++
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVN-FAELAASSDTLEHLNLQY 178 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCC-SGGGBCGGGGSSEEEEECTTSCCCEEE-GGGGGGGTTTCCEEECTT
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCC-CCCchhhcCCCCCCEEECCCCCCCCcC-hHHHhhhCCcccEEecCC
Confidence 88888877765432 3577888888888876 444555667788888888888877555 55554 677888888888
Q ss_pred CCcccCCCCccccccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCceEEEeecceeeeeecc
Q 040144 161 NTGLTGRIPRSMALCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFE 240 (289)
Q Consensus 161 n~~~~~~~~~~~~~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~ 240 (289)
|. +.+. +....+++|+.|++ ++|.+++.++ .+..+++|+.|++++|.++ .+|.
T Consensus 179 N~-l~~~-~~~~~l~~L~~L~L------s~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~------------------~lp~ 231 (487)
T 3oja_A 179 NF-IYDV-KGQVVFAKLKTLDL------SSNKLAFMGP-EFQSAAGVTWISLRNNKLV------------------LIEK 231 (487)
T ss_dssp SC-CCEE-ECCCCCTTCCEEEC------CSSCCCEECG-GGGGGTTCSEEECTTSCCC------------------EECT
T ss_pred Cc-cccc-cccccCCCCCEEEC------CCCCCCCCCH-hHcCCCCccEEEecCCcCc------------------ccch
Confidence 87 5533 22222667777765 7777775444 3677777888777777666 3555
Q ss_pred ccccccccccEEEecCCeee-eccCCCccccccccEEecc
Q 040144 241 LHFANLIEMSWFRVGGNQLT-LEVKHDWIPHFQLVALGLH 279 (289)
Q Consensus 241 ~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~~L~~l~l~ 279 (289)
.+..+++|+.|++++|++. +.+|..+..++.++.++++
T Consensus 232 -~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 232 -ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp -TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred -hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 5667777888888887776 4455556666666666664
No 59
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=1e-27 Score=207.88 Aligned_cols=280 Identities=18% Similarity=0.102 Sum_probs=132.2
Q ss_pred CCCcEEEccCCcccc----cCCCccCCCCCCcEEeCCCccccccCCCcccCCCC----cccEEeccCcccccc--chhhH
Q 040144 2 GNLRYLNFSKTRICG----IIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGIS----LLEHLDLRYVNLSIA--FDWLM 71 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~----~L~~L~l~~~~~~~~--~~~~~ 71 (289)
++|++|++++|.+++ .++..+..+++|++|++++|.+...........++ +|++|++++|.+... ..+..
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 566777777776653 23445566667777777766543322111112232 466666666665542 12233
Q ss_pred hhhcCCCccEEEccCCccCCCCcccc-----cCCCCCcEEeccCCCCCCc---chhhHhhcCCCCCEEEccCceeeeeeC
Q 040144 72 VANKLLSLVELRLSNCQLQHFSPLAT-----VNFSSLTMLDLSHNQFDNS---FILSWVFALSHLPFLDLGFNNFQGTID 143 (289)
Q Consensus 72 ~~~~~~~L~~L~l~~~~l~~~~~~~l-----~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~n~~~~~~~ 143 (289)
.+..+++|++|++++|.++...+..+ ...++|++|++++|.+++. .++..+..+++|++|++++|.+.+..
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~- 186 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG- 186 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH-
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH-
Confidence 55566666666666665543222111 1133455555555555411 11233344455555555555543211
Q ss_pred hhhhc-----CCCCccEEeCCCCCcccCC----CCcccc-ccCcceeeccc-----------------------cccccC
Q 040144 144 LEALG-----NLTSINRLDLSLNTGLTGR----IPRSMA-LCNLKSINLQE-----------------------SLDMRS 190 (289)
Q Consensus 144 ~~~~~-----~~~~L~~L~l~~n~~~~~~----~~~~~~-~~~L~~L~l~~-----------------------~l~l~~ 190 (289)
...+. ..++|++|++++|. +.+. ++..+. +++|++|++++ .+++++
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~ 265 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC
Confidence 11111 13344455554444 3321 122233 34444444322 223366
Q ss_pred Cccccc----ccccccCCCCCcEEEccCCeeeecC------------CCceEEEeecceeeee----ecccccccccccc
Q 040144 191 SSIYGH----LTDQLGQFRNLVTFNLVNNSIVGFI------------PWSFELHIYDNKLNVT----LFELHFANLIEMS 250 (289)
Q Consensus 191 ~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~------------~~~~~L~l~~n~~~~~----~~~~~~~~~~~L~ 250 (289)
|.++.. ++..+..+++|+.|++++|.+++.. +....|++++|.+++. ++. .+..+++|+
T Consensus 266 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~ 344 (461)
T 1z7x_W 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS-VLAQNRFLL 344 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH-HHHHCSSCC
T ss_pred CCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH-HHhhCCCcc
Confidence 666543 4455556777777777777665321 1222555555555432 222 344445555
Q ss_pred EEEecCCeeeeccCCCccc-----cccccEEecccccCc
Q 040144 251 WFRVGGNQLTLEVKHDWIP-----HFQLVALGLHSCYIG 284 (289)
Q Consensus 251 ~l~l~~n~~~~~~~~~~~~-----~~~L~~l~l~~n~~~ 284 (289)
+|++++|++++..+..+.. .++|+.|++++|+++
T Consensus 345 ~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 345 ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred EEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 5555555554433322221 334555555555444
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=2e-27 Score=195.62 Aligned_cols=243 Identities=17% Similarity=0.149 Sum_probs=187.0
Q ss_pred cCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhh-------hcCCCccEEEccCCccCCCCc
Q 040144 22 LGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVA-------NKLLSLVELRLSNCQLQHFSP 94 (289)
Q Consensus 22 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-------~~~~~L~~L~l~~~~l~~~~~ 94 (289)
++..++|+++++++|.+ ..+.. +. ..|++|+++++.+.... ++..+ ..+++|++|++++|.+....+
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~--~~--~~L~~L~L~~n~l~~~~-~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQ--FT--DIIKSLSLKRLTVRAAR-IPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHH--HH--HHHHHCCCCEEEEEEEE-CBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EccCCCceeEeeccccc-ccHHH--HH--HHHhhcccccccccCCC-cCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 34556788888888777 33321 22 23889999999885531 11122 268999999999999987767
Q ss_pred ccc--cCCCCCcEEeccCCCCCCcchhhHhhcC-----CCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCC
Q 040144 95 LAT--VNFSSLTMLDLSHNQFDNSFILSWVFAL-----SHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGR 167 (289)
Q Consensus 95 ~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~~-----~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 167 (289)
..+ ..+++|+.|++++|.++ .. +..+..+ ++|++|++++|.+.+ +++..++.+++|++|++++|. +.+.
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~-~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~-l~~~ 188 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWA-TR-DAWLAELQQWLKPGLKVLSIAQAHSLN-FSCEQVRVFPALSTLDLSDNP-ELGE 188 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCS-SS-SSHHHHHHTTCCTTCCEEEEESCSCCC-CCTTTCCCCSSCCEEECCSCT-TCHH
T ss_pred HHHHHhcCCCccEEEccCCCCc-ch-hHHHHHHHHhhcCCCcEEEeeCCCCcc-chHHHhccCCCCCEEECCCCC-cCcc
Confidence 665 88999999999999997 33 5556555 899999999999984 436889999999999999998 5543
Q ss_pred --CCccc--c-ccCcceeeccccccccCCccccc---ccccccCCCCCcEEEccCCeeeecCCCc--------eEEEeec
Q 040144 168 --IPRSM--A-LCNLKSINLQESLDMRSSSIYGH---LTDQLGQFRNLVTFNLVNNSIVGFIPWS--------FELHIYD 231 (289)
Q Consensus 168 --~~~~~--~-~~~L~~L~l~~~l~l~~~~~~~~---~~~~l~~~~~L~~L~l~~n~~~~~~~~~--------~~L~l~~ 231 (289)
.+..+ . +++|++|++ ++|.+++. ....+..+++|+.|++++|.+++..|.. ..|++++
T Consensus 189 ~~~~~~~~~~~l~~L~~L~L------~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~ 262 (312)
T 1wwl_A 189 RGLISALCPLKFPTLQVLAL------RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262 (312)
T ss_dssp HHHHHHSCTTSCTTCCEEEC------TTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTT
T ss_pred hHHHHHHHhccCCCCCEEEC------CCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCC
Confidence 23333 5 888888886 88888732 2234567899999999999998755321 1899999
Q ss_pred ceeeeeeccccccccccccEEEecCCeeeeccCCCccccccccEEecccccCccC
Q 040144 232 NKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIGSR 286 (289)
Q Consensus 232 n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 286 (289)
|.++ .+|. .+. ++|++|++++|++++. |. +..+++|+.|++++|++++.
T Consensus 263 N~l~-~ip~-~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 263 TGLK-QVPK-GLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SCCS-SCCS-SCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred CccC-hhhh-hcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 9998 7888 565 8999999999999975 65 88999999999999999853
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=2.7e-25 Score=183.35 Aligned_cols=218 Identities=22% Similarity=0.171 Sum_probs=117.3
Q ss_pred CCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCC
Q 040144 23 GNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSS 102 (289)
Q Consensus 23 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 102 (289)
..+++|++|++++|.+....+.. +.++++|++|++++|.+...+ .+..+++|++|++++|.++... ..++
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~----~~~~l~~L~~L~Ls~n~l~~l~-----~~~~ 100 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAAD-LAPFTKLELLNLSSNVLYETL----DLESLSTLRTLDLNNNYVQELL-----VGPS 100 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHH-HTTCTTCCEEECTTSCCEEEE----EETTCTTCCEEECCSSEEEEEE-----ECTT
T ss_pred ccCCCCCEEECcCCccCcCCHHH-hhCCCcCCEEECCCCcCCcch----hhhhcCCCCEEECcCCcccccc-----CCCC
Confidence 33445555555555444332211 344555555555555544332 1344555555555555444321 2245
Q ss_pred CcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc--ccCccee
Q 040144 103 LTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA--LCNLKSI 180 (289)
Q Consensus 103 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~--~~~L~~L 180 (289)
|+.|++++|.++ ...+ ..+++|++|++++|.+.+.. +..++.+++|++|++++|. +.+..+..+. +++|+.|
T Consensus 101 L~~L~l~~n~l~-~~~~---~~~~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 101 IETLHAANNNIS-RVSC---SRGQGKKNIYLANNKITMLR-DLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHL 174 (317)
T ss_dssp CCEEECCSSCCS-EEEE---CCCSSCEEEECCSSCCCSGG-GBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEE
T ss_pred cCEEECCCCccC-CcCc---cccCCCCEEECCCCCCCCcc-chhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEE
Confidence 555555555543 1111 12344555555555554221 3344445555555555554 3332233221 3444444
Q ss_pred eccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCceEEEeecceeeeeeccccccccccccEEEecCCeee
Q 040144 181 NLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLT 260 (289)
Q Consensus 181 ~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 260 (289)
++ ++|.+++... ...+++|+.| ++++|.++ .++. .+..+++|+.|++++|+++
T Consensus 175 ~L------~~N~l~~~~~--~~~l~~L~~L-----------------~Ls~N~l~-~l~~-~~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 175 NL------QYNFIYDVKG--QVVFAKLKTL-----------------DLSSNKLA-FMGP-EFQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp EC------TTSCCCEEEC--CCCCTTCCEE-----------------ECCSSCCC-EECG-GGGGGTTCSEEECTTSCCC
T ss_pred EC------CCCcCccccc--ccccccCCEE-----------------ECCCCcCC-cchh-hhcccCcccEEECcCCccc
Confidence 43 4444443211 1124444444 55555554 5666 5889999999999999999
Q ss_pred eccCCCccccccccEEecccccCc
Q 040144 261 LEVKHDWIPHFQLVALGLHSCYIG 284 (289)
Q Consensus 261 ~~~~~~~~~~~~L~~l~l~~n~~~ 284 (289)
+ +|..+..+++|+.|++++|.++
T Consensus 228 ~-l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 228 L-IEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp E-ECTTCCCCTTCCEEECTTCCCB
T ss_pred c-hhhHhhcCCCCCEEEccCCCcc
Confidence 5 7888999999999999999987
No 62
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=7.7e-24 Score=182.60 Aligned_cols=234 Identities=22% Similarity=0.219 Sum_probs=107.5
Q ss_pred CCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcE
Q 040144 26 SNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTM 105 (289)
Q Consensus 26 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~ 105 (289)
++|++|++++|.+..++ . +.++++|++|++++|.+...+. ..++|++|++++|.+... + .++.+++|+.
T Consensus 131 ~~L~~L~L~~n~l~~lp--~-~~~l~~L~~L~l~~N~l~~lp~------~~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~ 199 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP--E-LQNSSFLKIIDVDNNSLKKLPD------LPPSLEFIAAGNNQLEEL-P-ELQNLPFLTA 199 (454)
T ss_dssp TTCCEEECCSSCCSSCC--C-CTTCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSSC-C-CCTTCTTCCE
T ss_pred CCCCEEECcCCCCCCCc--c-cCCCCCCCEEECCCCcCcccCC------CcccccEEECcCCcCCcC-c-cccCCCCCCE
Confidence 46666666666555433 1 5566666666666666554332 113566666666665553 2 3555566666
Q ss_pred EeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCccccccCcceeeccc-
Q 040144 106 LDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMALCNLKSINLQE- 184 (289)
Q Consensus 106 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~- 184 (289)
|++++|.++ .++.. ..+|++|++++|.+. .+ + .++.+++|++|++++|. +.+ +|.. +++|+.|++++
T Consensus 200 L~l~~N~l~--~l~~~---~~~L~~L~l~~n~l~-~l-p-~~~~l~~L~~L~l~~N~-l~~-l~~~--~~~L~~L~l~~N 267 (454)
T 1jl5_A 200 IYADNNSLK--KLPDL---PLSLESIVAGNNILE-EL-P-ELQNLPFLTTIYADNNL-LKT-LPDL--PPSLEALNVRDN 267 (454)
T ss_dssp EECCSSCCS--SCCCC---CTTCCEEECCSSCCS-SC-C-CCTTCTTCCEEECCSSC-CSS-CCSC--CTTCCEEECCSS
T ss_pred EECCCCcCC--cCCCC---cCcccEEECcCCcCC-cc-c-ccCCCCCCCEEECCCCc-CCc-cccc--ccccCEEECCCC
Confidence 666655554 12211 234555555555554 33 2 24455555555555554 331 2211 12333333211
Q ss_pred -------------cccccCCccccc--cccc-------------ccCC-CCCcEEEccCCeeeecCCCce----EEEeec
Q 040144 185 -------------SLDMRSSSIYGH--LTDQ-------------LGQF-RNLVTFNLVNNSIVGFIPWSF----ELHIYD 231 (289)
Q Consensus 185 -------------~l~l~~~~~~~~--~~~~-------------l~~~-~~L~~L~l~~n~~~~~~~~~~----~L~l~~ 231 (289)
.+++++|.+++. .|.. +..+ ++|+.|++++|.+++ +|..+ .|++++
T Consensus 268 ~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~~~~L~~L~L~~ 346 (454)
T 1jl5_A 268 YLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERLIASF 346 (454)
T ss_dssp CCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCS
T ss_pred cccccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-ccccCCcCCEEECCC
Confidence 122244444431 1110 1112 356666666666553 33222 666666
Q ss_pred ceeeeeeccccccccccccEEEecCCeeee--ccCCCcccc-------------ccccEEecccccCcc--CCC
Q 040144 232 NKLNVTLFELHFANLIEMSWFRVGGNQLTL--EVKHDWIPH-------------FQLVALGLHSCYIGS--RFP 288 (289)
Q Consensus 232 n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~--~~~~~~~~~-------------~~L~~l~l~~n~~~~--~~p 288 (289)
|.++ .+|. .+++|+.|++++|++++ .+|..+..+ ++|+.|++++|++++ .+|
T Consensus 347 N~l~-~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP 415 (454)
T 1jl5_A 347 NHLA-EVPE----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP 415 (454)
T ss_dssp SCCS-CCCC----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------
T ss_pred Cccc-cccc----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch
Confidence 6665 3544 35677777777777776 566666666 667777777777765 555
No 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.92 E-value=9.3e-27 Score=201.79 Aligned_cols=275 Identities=19% Similarity=0.172 Sum_probs=167.9
Q ss_pred CCcEEEccCCcccc----cCCCccCCCCCCcEEeCCCccccccCCCc----ccCCCCcccEEeccCccccccc--hhhHh
Q 040144 3 NLRYLNFSKTRICG----IIPQQLGNLSNLQFLDLSSKYLLYVDNFL----WLSGISLLEHLDLRYVNLSIAF--DWLMV 72 (289)
Q Consensus 3 ~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~--~~~~~ 72 (289)
+|++|++++|.+++ .++..+..+++|++|++++|.+....... .....++|++|++++|.+.... .+...
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 46666666666653 33555666666666666666543221110 0112345666666666655431 22334
Q ss_pred hhcCCCccEEEccCCccCCCCccccc-----CCCCCcEEeccCCCCCCcc---hhhHhhcCCCCCEEEccCceeeeee--
Q 040144 73 ANKLLSLVELRLSNCQLQHFSPLATV-----NFSSLTMLDLSHNQFDNSF---ILSWVFALSHLPFLDLGFNNFQGTI-- 142 (289)
Q Consensus 73 ~~~~~~L~~L~l~~~~l~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~n~~~~~~-- 142 (289)
+..+++|++|++++|.+.......+. ..++|+.|++++|.+++.. ++..+..+++|++|++++|.+.+..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 55667777777777766543222222 2457777777777776221 3455666778888888888765321
Q ss_pred --ChhhhcCCCCccEEeCCCCCcccCC----CCcccc-ccCcceeeccccccccCCccccccccccc-----CCCCCcEE
Q 040144 143 --DLEALGNLTSINRLDLSLNTGLTGR----IPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLG-----QFRNLVTF 210 (289)
Q Consensus 143 --~~~~~~~~~~L~~L~l~~n~~~~~~----~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~-----~~~~L~~L 210 (289)
.+..+..+++|++|++++|. +++. ++..+. +++|++|++ ++|.+++..+..+. ..++|+.|
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L------s~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSL------AGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEEC------TTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred HHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEEC------CCCCCchHHHHHHHHHhccCCccceee
Confidence 01112246778888888887 5532 455555 777887776 77777644333332 23588888
Q ss_pred EccCCeeeecC-----------CCceEEEeecceeeeeeccccccc-----cccccEEEecCCeeee----ccCCCcccc
Q 040144 211 NLVNNSIVGFI-----------PWSFELHIYDNKLNVTLFELHFAN-----LIEMSWFRVGGNQLTL----EVKHDWIPH 270 (289)
Q Consensus 211 ~l~~n~~~~~~-----------~~~~~L~l~~n~~~~~~~~~~~~~-----~~~L~~l~l~~n~~~~----~~~~~~~~~ 270 (289)
++++|.+++.. +....|++++|.+++..+. .+.. .++|++|++++|++++ .++..+..+
T Consensus 319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~-~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 397 (461)
T 1z7x_W 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR-ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 397 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH-HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH-HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhC
Confidence 88888877542 2222788888887643333 3332 5688888888888885 566677778
Q ss_pred ccccEEecccccCcc
Q 040144 271 FQLVALGLHSCYIGS 285 (289)
Q Consensus 271 ~~L~~l~l~~n~~~~ 285 (289)
++|++|++++|++++
T Consensus 398 ~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 398 HSLRELDLSNNCLGD 412 (461)
T ss_dssp CCCCEEECCSSSCCH
T ss_pred CCccEEECCCCCCCH
Confidence 888888888888764
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.6e-23 Score=169.46 Aligned_cols=209 Identities=21% Similarity=0.200 Sum_probs=162.2
Q ss_pred CCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEE
Q 040144 3 NLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVEL 82 (289)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 82 (289)
++++|++++|.+++..+..|.++++|++|++++|.+....... +.++++|++|++++|.+...+. ..+..+++|++|
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L 105 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTGNPIQSLAL--GAFSGLSSLQKL 105 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCCEECT--TTTTTCTTCCEE
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHH-ccCCcCCCEEECCCCccCccCh--hhhcCCccccEE
Confidence 5889999999988777778888999999999988776655433 6778899999999998877642 257788899999
Q ss_pred EccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCcc----EEeC
Q 040144 83 RLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSIN----RLDL 158 (289)
Q Consensus 83 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~----~L~l 158 (289)
++.+|.+....+..+..+++|++|++++|.++...++..+..+++|++|++++|.+++.. +..+..+++++ ++++
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC-GGGGHHHHTCTTCCEEEEC
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC-HHHhhhhhhccccceeeec
Confidence 999998888766678888999999999998873345777888899999999999887433 55666666666 8899
Q ss_pred CCCCcccCCCCccccccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCC
Q 040144 159 SLNTGLTGRIPRSMALCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIP 222 (289)
Q Consensus 159 ~~n~~~~~~~~~~~~~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 222 (289)
++|. +....+..+...+|+.|++ ++|.+++..+..+..+++|+.|++++|.+....+
T Consensus 185 s~n~-l~~~~~~~~~~~~L~~L~L------~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 185 SLNP-MNFIQPGAFKEIRLKELAL------DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CSSC-CCEECTTSSCSCCEEEEEC------CSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CCCc-ccccCccccCCCcccEEEC------CCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 9888 6543333333557777776 8888887777777888999999999988885543
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=7.4e-23 Score=165.49 Aligned_cols=206 Identities=21% Similarity=0.214 Sum_probs=134.8
Q ss_pred CcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCE
Q 040144 51 SLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPF 130 (289)
Q Consensus 51 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 130 (289)
+.|++|++++|.+...+. ..+..+++|++|++++|.+....+..+..+++|++|++++|.++ ...+..+..+++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGS--YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCCCCEECT--TTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCE
T ss_pred CCccEEECCCCcccccCH--hHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccE
Confidence 457788888877766532 14567777888888888777666666777778888888877776 444455667777888
Q ss_pred EEccCceeeeeeChhhhcCCCCccEEeCCCCCcccC-CCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCc
Q 040144 131 LDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTG-RIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLV 208 (289)
Q Consensus 131 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~ 208 (289)
|++++|.+.+ +.+..++.+++|++|++++|. +.+ .+|..+. +++|+.|++ ++|.+++..+..+..+++|+
T Consensus 105 L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~ 176 (276)
T 2z62_A 105 LVAVETNLAS-LENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDL------SSNKIQSIYCTDLRVLHQMP 176 (276)
T ss_dssp EECTTSCCCC-STTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEEC------CSSCCCEECGGGGHHHHTCT
T ss_pred EECCCCCccc-cCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEEC------CCCCCCcCCHHHhhhhhhcc
Confidence 8887777763 324457777778888887777 543 2466666 777777765 67777766666666655555
Q ss_pred ----EEEccCCeeeecCCCceEEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCccccccccEEecccccCc
Q 040144 209 ----TFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIG 284 (289)
Q Consensus 209 ----~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~ 284 (289)
.|++++|.+.+ ++. ......+|+.|++++|++++..+..+..+++|+.|++++|.++
T Consensus 177 ~l~l~L~ls~n~l~~------------------~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 177 LLNLSLDLSLNPMNF------------------IQP-GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp TCCEEEECCSSCCCE------------------ECT-TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred ccceeeecCCCcccc------------------cCc-cccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 66666666552 333 2223346666777666666544444566666667777766665
Q ss_pred cC
Q 040144 285 SR 286 (289)
Q Consensus 285 ~~ 286 (289)
..
T Consensus 238 c~ 239 (276)
T 2z62_A 238 CS 239 (276)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=3.9e-24 Score=175.98 Aligned_cols=224 Identities=21% Similarity=0.185 Sum_probs=128.9
Q ss_pred CcEEEccCCccc-ccCCCccC-------CCCCCcEEeCCCccccccCCCcc-cCCCCcccEEeccCccccccchhhHhhh
Q 040144 4 LRYLNFSKTRIC-GIIPQQLG-------NLSNLQFLDLSSKYLLYVDNFLW-LSGISLLEHLDLRYVNLSIAFDWLMVAN 74 (289)
Q Consensus 4 L~~L~l~~~~~~-~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 74 (289)
+++|++++|.++ ...+..+. ++++|++|++++|.+....+... +..+++|++|++++|.+...+. .+.
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~ 141 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDA---WLA 141 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSS---HHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhH---HHH
Confidence 344555555552 23343333 56667777776666553322221 2556667777777766665533 222
Q ss_pred cC-----CCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcc--hhhHh--hcCCCCCEEEccCceeee--eeC
Q 040144 75 KL-----LSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSF--ILSWV--FALSHLPFLDLGFNNFQG--TID 143 (289)
Q Consensus 75 ~~-----~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~--~~~~~L~~L~l~~n~~~~--~~~ 143 (289)
.+ ++|++|++++|.+....+..++.+++|+.|++++|.+. +. .+..+ ..+++|++|++++|.+.+ .++
T Consensus 142 ~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 220 (312)
T 1wwl_A 142 ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL-GERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220 (312)
T ss_dssp HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC-HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHH
T ss_pred HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC-cchHHHHHHHhccCCCCCEEECCCCcCcchHHHH
Confidence 22 66777777777666665566666677777777766654 22 12222 456667777777766652 111
Q ss_pred hhhhcCCCCccEEeCCCCCcccCCCC-cccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecC
Q 040144 144 LEALGNLTSINRLDLSLNTGLTGRIP-RSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFI 221 (289)
Q Consensus 144 ~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 221 (289)
...+..+++|++|++++|. +.+..| ..+. +++|+.|++ ++|.++ .+|..+. ++|+.|++++|+++
T Consensus 221 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L------s~N~l~-~ip~~~~--~~L~~L~Ls~N~l~--- 287 (312)
T 1wwl_A 221 SALAAARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNL------SFTGLK-QVPKGLP--AKLSVLDLSYNRLD--- 287 (312)
T ss_dssp HHHHHTTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEEC------TTSCCS-SCCSSCC--SEEEEEECCSSCCC---
T ss_pred HHHHhcCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEEC------CCCccC-hhhhhcc--CCceEEECCCCCCC---
Confidence 2233455667777777666 554433 2233 556666554 566665 4444443 55666666665555
Q ss_pred CCceEEEeecceeeeeeccccccccccccEEEecCCeeee
Q 040144 222 PWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTL 261 (289)
Q Consensus 222 ~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 261 (289)
.+|. +..+++|++|++++|++++
T Consensus 288 ---------------~~p~--~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 288 ---------------RNPS--PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp ---------------SCCC--TTTSCEEEEEECTTCTTTC
T ss_pred ---------------CChh--HhhCCCCCEEeccCCCCCC
Confidence 3443 7789999999999999875
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=9.2e-24 Score=183.77 Aligned_cols=214 Identities=23% Similarity=0.198 Sum_probs=119.6
Q ss_pred CCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEE
Q 040144 27 NLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTML 106 (289)
Q Consensus 27 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L 106 (289)
+|++|++++|.+...++.. +..+++|++|++++|.+...++ +..+++|++|++++|.++... ..++|+.|
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAAD-LAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp GCCEEECCSSCCCCCCGGG-GTTCTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred CccEEEeeCCcCCCCCHHH-HhCCCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 5555555555544433222 4455555555555555544321 445555555555555544321 12455555
Q ss_pred eccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc--ccCcceeeccc
Q 040144 107 DLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA--LCNLKSINLQE 184 (289)
Q Consensus 107 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~--~~~L~~L~l~~ 184 (289)
++++|.++ ...+ ..+++|+.|++++|.+.+.. +..++.+++|+.|++++|. +.+..|..+. +++|+.|++
T Consensus 105 ~L~~N~l~-~~~~---~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~L-- 176 (487)
T 3oja_A 105 HAANNNIS-RVSC---SRGQGKKNIYLANNKITMLR-DLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNL-- 176 (487)
T ss_dssp ECCSSCCC-CEEE---CCCSSCEEEECCSSCCCSGG-GBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEEC--
T ss_pred ECcCCcCC-CCCc---cccCCCCEEECCCCCCCCCC-chhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEec--
Confidence 55555554 1111 12345555555555554322 3444455555555555555 4433333332 444444443
Q ss_pred cccccCCcccccccccccCCCCCcEEEccCCeeeecCCCceEEEeecceeeeeeccccccccccccEEEecCCeeeeccC
Q 040144 185 SLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVK 264 (289)
Q Consensus 185 ~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 264 (289)
++|.+++..+ ...+++|+.|++ ++|.++ .++. .+..+++|+.|++++|.+++ +|
T Consensus 177 ----s~N~l~~~~~--~~~l~~L~~L~L-----------------s~N~l~-~~~~-~~~~l~~L~~L~Ls~N~l~~-lp 230 (487)
T 3oja_A 177 ----QYNFIYDVKG--QVVFAKLKTLDL-----------------SSNKLA-FMGP-EFQSAAGVTWISLRNNKLVL-IE 230 (487)
T ss_dssp ----TTSCCCEEEC--CCCCTTCCEEEC-----------------CSSCCC-EECG-GGGGGTTCSEEECTTSCCCE-EC
T ss_pred ----CCCccccccc--cccCCCCCEEEC-----------------CCCCCC-CCCH-hHcCCCCccEEEecCCcCcc-cc
Confidence 4444443321 123444555555 455554 4666 58899999999999999996 78
Q ss_pred CCccccccccEEecccccCc
Q 040144 265 HDWIPHFQLVALGLHSCYIG 284 (289)
Q Consensus 265 ~~~~~~~~L~~l~l~~n~~~ 284 (289)
..+..+++|+.|++++|.+.
T Consensus 231 ~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 231 KALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp TTCCCCTTCCEEECTTCCBC
T ss_pred hhhccCCCCCEEEcCCCCCc
Confidence 88999999999999999987
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.9e-23 Score=168.48 Aligned_cols=210 Identities=20% Similarity=0.179 Sum_probs=169.4
Q ss_pred cCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCC
Q 040144 22 LGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFS 101 (289)
Q Consensus 22 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 101 (289)
...+++|++|++.++.+..... +..+++|++|++++|.+.... .+..+++|++|++++|.++...+..+..++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~---l~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 109 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQG---IQYLPNVRYLALGGNKLHDIS----ALKELTNLTYLILTGNQLQSLPNGVFDKLT 109 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTT---GGGCTTCCEEECTTSCCCCCG----GGTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred cccccceeeeeeCCCCcccccc---cccCCCCcEEECCCCCCCCch----hhcCCCCCCEEECCCCccCccChhHhcCCc
Confidence 4567899999999987665543 677999999999999887643 577889999999999999988777788999
Q ss_pred CCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCccee
Q 040144 102 SLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSI 180 (289)
Q Consensus 102 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L 180 (289)
+|++|++++|.++ ...+..+..+++|++|++++|.+. .+++..++.+++|++|++++|. +.+..+..+. +++|+.|
T Consensus 110 ~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 110 NLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp TCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEE
Confidence 9999999999987 545555778899999999999988 4436678899999999999998 7755555667 8999988
Q ss_pred eccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCceEEEeecceeeeeecccccccccc
Q 040144 181 NLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIE 248 (289)
Q Consensus 181 ~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~ 248 (289)
++ ++|.+.+..+..++.+++|+.|++++|.+.+..|....++++.|.++|.+|. +++++..
T Consensus 187 ~L------~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n~~~g~ip~-~~~~~~~ 247 (272)
T 3rfs_A 187 RL------YQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRN-SAGSVAP 247 (272)
T ss_dssp EC------CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGBBC-TTSCBCG
T ss_pred EC------CCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHHHHHHHHHHhCCCcccC-cccccCC
Confidence 86 8899998888888999999999999998886666544566666666666666 5554443
No 69
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=3.6e-22 Score=172.14 Aligned_cols=246 Identities=18% Similarity=0.169 Sum_probs=136.5
Q ss_pred CCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEE
Q 040144 3 NLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVEL 82 (289)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 82 (289)
+|++|++++|.+++ +|.. +++|++|++++|.+...+. ..++|++|++++|.+...+ .+..+++|++|
T Consensus 92 ~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~-----~~~~L~~L~L~~n~l~~lp----~~~~l~~L~~L 158 (454)
T 1jl5_A 92 HLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSD-----LPPLLEYLGVSNNQLEKLP----ELQNSSFLKII 158 (454)
T ss_dssp TCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCS-----CCTTCCEEECCSSCCSSCC----CCTTCTTCCEE
T ss_pred CCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccC-----CCCCCCEEECcCCCCCCCc----ccCCCCCCCEE
Confidence 34455555555443 3321 2455555555554433221 1246777777777666533 35667777777
Q ss_pred EccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCC
Q 040144 83 RLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNT 162 (289)
Q Consensus 83 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 162 (289)
++++|.++... .. ..+|++|++++|.++ .++ .++.+++|++|++++|.+.+ + +.. .++|++|++++|.
T Consensus 159 ~l~~N~l~~lp-~~---~~~L~~L~L~~n~l~--~l~-~~~~l~~L~~L~l~~N~l~~-l-~~~---~~~L~~L~l~~n~ 226 (454)
T 1jl5_A 159 DVDNNSLKKLP-DL---PPSLEFIAAGNNQLE--ELP-ELQNLPFLTAIYADNNSLKK-L-PDL---PLSLESIVAGNNI 226 (454)
T ss_dssp ECCSSCCSCCC-CC---CTTCCEEECCSSCCS--SCC-CCTTCTTCCEEECCSSCCSS-C-CCC---CTTCCEEECCSSC
T ss_pred ECCCCcCcccC-CC---cccccEEECcCCcCC--cCc-cccCCCCCCEEECCCCcCCc-C-CCC---cCcccEEECcCCc
Confidence 77777766532 11 247777777777775 234 46677778888888777763 3 321 2478888888887
Q ss_pred cccCCCCcccc-ccCcceeeccc--------------cccccCCcccccccccccCCCCCcEEEccCCeeee--cCCCce
Q 040144 163 GLTGRIPRSMA-LCNLKSINLQE--------------SLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVG--FIPWSF 225 (289)
Q Consensus 163 ~~~~~~~~~~~-~~~L~~L~l~~--------------~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~--~~~~~~ 225 (289)
+. .+|. +. +++|+.|++++ .+++++|.+.+ +|.. .++|+.|++++|.+++ .+|..+
T Consensus 227 -l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L 299 (454)
T 1jl5_A 227 -LE-ELPE-LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNL 299 (454)
T ss_dssp -CS-SCCC-CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTC
T ss_pred -CC-cccc-cCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcC
Confidence 55 5664 66 88899888744 34444444443 2211 2455666666665554 222222
Q ss_pred -EEEeecceeee-------------------eeccccccccccccEEEecCCeeeeccCCCccccccccEEecccccCcc
Q 040144 226 -ELHIYDNKLNV-------------------TLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIGS 285 (289)
Q Consensus 226 -~L~l~~n~~~~-------------------~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 285 (289)
.|++++|.+++ .+|. .+++|+.|++++|++++ +|. .+++|+.|++++|++++
T Consensus 300 ~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 300 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS
T ss_pred CEEECcCCcCCcccCCcCcCCEEECCCCccccccc----cCCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCc
Confidence 34444443331 1222 13556666666666553 443 24567777777777765
Q ss_pred --CCC
Q 040144 286 --RFP 288 (289)
Q Consensus 286 --~~p 288 (289)
.+|
T Consensus 372 l~~ip 376 (454)
T 1jl5_A 372 FPDIP 376 (454)
T ss_dssp CCCCC
T ss_pred CCCCh
Confidence 444
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.2e-22 Score=163.61 Aligned_cols=203 Identities=22% Similarity=0.225 Sum_probs=147.6
Q ss_pred CCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEE
Q 040144 27 NLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTML 106 (289)
Q Consensus 27 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L 106 (289)
..++++++++.+..++.. + .+.+++|+++++.+...+. ..+..+++|++|++++|.++...+..+..+++|++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~--~--~~~l~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSN--I--PADTKKLDLQSNKLSSLPS--KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL 90 (270)
T ss_dssp TTTEEECTTSCCSSCCSC--C--CTTCSEEECCSSCCSCCCT--TSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred CCCEEEccCCCCCccCCC--C--CCCCCEEECcCCCCCeeCH--HHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence 567888888776665532 1 3578888888888776532 256778888888888888887766667778888888
Q ss_pred eccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeecccc
Q 040144 107 DLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQES 185 (289)
Q Consensus 107 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~ 185 (289)
++++|.++ ...+..+..+++|++|++++|.+.+ +++..+..+++|++|++++|. +....+..+. +++|+.|++
T Consensus 91 ~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L--- 164 (270)
T 2o6q_A 91 WVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRL--- 164 (270)
T ss_dssp ECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC---
T ss_pred ECCCCcCC-cCCHhHcccccCCCEEECCCCccCe-eCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEe---
Confidence 88888886 4334456677888888888888874 436667788888888888887 6644444456 778887775
Q ss_pred ccccCCcccccccccccCCCCCcEEEccCCeeeecCCCceEEEeecceeeeeeccccccccccccEEEecCCeeeec
Q 040144 186 LDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLE 262 (289)
Q Consensus 186 l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 262 (289)
++|.+....+..+..+++|+.|++++|.++ .++...+..+++|+.|++++|++...
T Consensus 165 ---~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~------------------~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 165 ---YNNQLKRVPEGAFDKLTELKTLKLDNNQLK------------------RVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp ---CSSCCSCCCTTTTTTCTTCCEEECCSSCCS------------------CCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred ---cCCcCcEeChhHhccCCCcCEEECCCCcCC------------------cCCHHHhccccCCCEEEecCCCeeCC
Confidence 777777776667777888888888877766 33333567788888888888887643
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=1.5e-22 Score=179.86 Aligned_cols=240 Identities=19% Similarity=0.132 Sum_probs=150.7
Q ss_pred CCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEE
Q 040144 3 NLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVEL 82 (289)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 82 (289)
+++.|+++++.++ .+|..+. ++|++|++++|.+..++. .+++|++|++++|.+...+. .+++|++|
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~~lp~------~l~~L~~L 106 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLTSLPV------LPPGLLEL 106 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC-----CCTTCCEEEECSCCCSCCCC------CCTTCCEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC-----cCCCCCEEEcCCCcCCcCCC------CCCCCCEE
Confidence 3566777777766 4555444 567777777766554432 35667777777776655432 45666666
Q ss_pred EccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhh---------------
Q 040144 83 RLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEAL--------------- 147 (289)
Q Consensus 83 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--------------- 147 (289)
++++|.+..... .+++|+.|++++|.++ .++. .+++|++|++++|.+.+ + +..+
T Consensus 107 ~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~--~lp~---~l~~L~~L~Ls~N~l~~-l-~~~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 107 SIFSNPLTHLPA----LPSGLCKLWIFGNQLT--SLPV---LPPGLQELSVSDNQLAS-L-PALPSELCKLWAYNNQLTS 175 (622)
T ss_dssp EECSCCCCCCCC----CCTTCCEEECCSSCCS--CCCC---CCTTCCEEECCSSCCSC-C-CCCCTTCCEEECCSSCCSC
T ss_pred ECcCCcCCCCCC----CCCCcCEEECCCCCCC--cCCC---CCCCCCEEECcCCcCCC-c-CCccCCCCEEECCCCCCCC
Confidence 666666655422 3455566666655554 2222 13555555555555542 2 1111
Q ss_pred --cCCCCccEEeCCCCCcccCCCCccccccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCce
Q 040144 148 --GNLTSINRLDLSLNTGLTGRIPRSMALCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF 225 (289)
Q Consensus 148 --~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~ 225 (289)
..+++|+.|++++|. +. .+|.. .++|+.|++ ++|.++. +|. .+++|+.|++++|.+++ +|...
T Consensus 176 l~~~~~~L~~L~Ls~N~-l~-~l~~~--~~~L~~L~L------~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp~~l 240 (622)
T 3g06_A 176 LPMLPSGLQELSVSDNQ-LA-SLPTL--PSELYKLWA------YNNRLTS-LPA---LPSGLKELIVSGNRLTS-LPVLP 240 (622)
T ss_dssp CCCCCTTCCEEECCSSC-CS-CCCCC--CTTCCEEEC------CSSCCSS-CCC---CCTTCCEEECCSSCCSC-CCCCC
T ss_pred CcccCCCCcEEECCCCC-CC-CCCCc--cchhhEEEC------cCCcccc-cCC---CCCCCCEEEccCCccCc-CCCCC
Confidence 223556666666665 33 22221 345555554 6666663 332 24789999999998885 33222
Q ss_pred ----EEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCccccccccEEecccccCccCCC
Q 040144 226 ----ELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIGSRFP 288 (289)
Q Consensus 226 ----~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p 288 (289)
.|++++|.++ .+|. .+++|+.|++++|+++ .+|..+..+++|+.|++++|.+++.+|
T Consensus 241 ~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 241 SELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp TTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred CcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 8999999988 5666 5688999999999999 578889999999999999999986543
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=5.1e-23 Score=166.04 Aligned_cols=203 Identities=17% Similarity=0.149 Sum_probs=147.1
Q ss_pred cCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCC
Q 040144 47 LSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALS 126 (289)
Q Consensus 47 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 126 (289)
...+++|+.|+++++.+.... .+..+++|++|++++|.+... ..+..+++|++|++++|.++ ...+..+..++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~----~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~ 109 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ----GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLT 109 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT----TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCT
T ss_pred cccccceeeeeeCCCCccccc----ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC-ccChhHhcCCc
Confidence 455777888888888766543 456778888888888887764 36677888888888888876 44444566778
Q ss_pred CCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCC
Q 040144 127 HLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFR 205 (289)
Q Consensus 127 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~ 205 (289)
+|++|++++|.+.+ +++..++.+++|++|++++|. +.+..+..+. +++|+.|++ ++|.+++..+..++.++
T Consensus 110 ~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l------~~n~l~~~~~~~~~~l~ 181 (272)
T 3rfs_A 110 NLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDL------SYNQLQSLPEGVFDKLT 181 (272)
T ss_dssp TCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC------CSSCCCCCCTTTTTTCT
T ss_pred CCCEEECCCCcCCc-cCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEEC------CCCCcCccCHHHhcCCc
Confidence 88888888888773 435567778888888888887 6644445556 778887776 77778777776777888
Q ss_pred CCcEEEccCCeeeecCCCceEEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCccccccccEEecccccCcc
Q 040144 206 NLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIGS 285 (289)
Q Consensus 206 ~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 285 (289)
+|+.|++++|.+++ ++...+.++++|+.|++++|++.+ .+++++.++++.|.++|
T Consensus 182 ~L~~L~L~~N~l~~------------------~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 182 QLKDLRLYQNQLKS------------------VPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG 236 (272)
T ss_dssp TCCEEECCSSCCSC------------------CCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGG
T ss_pred cCCEEECCCCcCCc------------------cCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCC
Confidence 88888888877763 222256778888888888887764 35567777888888877
Q ss_pred CCCC
Q 040144 286 RFPL 289 (289)
Q Consensus 286 ~~p~ 289 (289)
.+|.
T Consensus 237 ~ip~ 240 (272)
T 3rfs_A 237 VVRN 240 (272)
T ss_dssp GBBC
T ss_pred cccC
Confidence 7763
No 73
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=5.8e-24 Score=176.78 Aligned_cols=251 Identities=16% Similarity=0.149 Sum_probs=184.3
Q ss_pred CcEEEccCCcccccCCCccCCC--CCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 4 LRYLNFSKTRICGIIPQQLGNL--SNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 4 L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
+++++++++.+. +..+..+ ++++.++++++.+...... +..+++|++|++++|.+... .+...+..+++|++
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~-~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVS-TLHGILSQCSKLQN 122 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHH-HHHHHHTTBCCCSE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHH-HHHHHHhhCCCCCE
Confidence 678888888765 3445556 7899999998876655433 45789999999999986543 12336788899999
Q ss_pred EEccCCccCCCCcccccCCCCCcEEeccCC-CCCCcchhhHhhcCCCCCEEEccCc-eeeee-eChhhhcCCC-CccEEe
Q 040144 82 LRLSNCQLQHFSPLATVNFSSLTMLDLSHN-QFDNSFILSWVFALSHLPFLDLGFN-NFQGT-IDLEALGNLT-SINRLD 157 (289)
Q Consensus 82 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~~~~~~~-~L~~L~ 157 (289)
|++++|.+....+..++.+++|++|++++| .+++...+..+..+++|++|++++| .+++. + +..+..++ +|++|+
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV-QVAVAHVSETITQLN 201 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHH-HHHHHHSCTTCCEEE
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHH-HHHHHhcccCCCEEE
Confidence 999999887666667788999999999998 6763346666788999999999999 87743 4 56678888 999999
Q ss_pred CCCCC-ccc-CCCCcccc-ccCcceeeccccccccCCc-ccccccccccCCCCCcEEEccCCe-eeecCCCceEEEeecc
Q 040144 158 LSLNT-GLT-GRIPRSMA-LCNLKSINLQESLDMRSSS-IYGHLTDQLGQFRNLVTFNLVNNS-IVGFIPWSFELHIYDN 232 (289)
Q Consensus 158 l~~n~-~~~-~~~~~~~~-~~~L~~L~l~~~l~l~~~~-~~~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~L~l~~n 232 (289)
+++|. .+. ..++..+. +++|+.|++ ++|. +++..+..++.+++|+.|++++|. +..
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l------~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~------------- 262 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDL------SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP------------- 262 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEEC------TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG-------------
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeC------CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH-------------
Confidence 99984 133 33455566 889998886 7787 666677788889999999999884 221
Q ss_pred eeeeeeccccccccccccEEEecCCeeeeccCCCcccc-ccccEEecccccCccCCCC
Q 040144 233 KLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPH-FQLVALGLHSCYIGSRFPL 289 (289)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~-~~L~~l~l~~n~~~~~~p~ 289 (289)
.... .+.++++|+.|++++| +++ ..+..+ ..+..|++++|++++..|+
T Consensus 263 ----~~~~-~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 263 ----ETLL-ELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp ----GGGG-GGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred ----HHHH-HHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCC
Confidence 1112 4667888888888888 332 234444 2467777888888876663
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=7.4e-22 Score=159.06 Aligned_cols=203 Identities=22% Similarity=0.263 Sum_probs=170.4
Q ss_pred CCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEE
Q 040144 3 NLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVEL 82 (289)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 82 (289)
+.+.++++++.++. +|..+. +++++|++++|.+...+... +.++++|++|++++|.+...+. ..+..+++|++|
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~i~~--~~~~~l~~L~~L 90 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKA-FHRLTKLRLLYLNDNKLQTLPA--GIFKELKNLETL 90 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTS-SSSCTTCCEEECCSSCCSCCCT--TTTSSCTTCCEE
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHH-hcCCCCCCEEECCCCccCeeCh--hhhcCCCCCCEE
Confidence 56789999999884 665443 68999999999877766433 7889999999999999887643 245789999999
Q ss_pred EccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCC
Q 040144 83 RLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNT 162 (289)
Q Consensus 83 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 162 (289)
++++|.+....+..+..+++|+.|++++|.++ ...+..+..+++|++|++++|.+. .+++..+..+++|++|++++|.
T Consensus 91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~ 168 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQ 168 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCc
Confidence 99999999887778889999999999999997 555556788999999999999998 4536678999999999999998
Q ss_pred cccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeec
Q 040144 163 GLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGF 220 (289)
Q Consensus 163 ~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 220 (289)
+....+..+. +++|+.|++ ++|.+++..+..+..+++|+.|++++|.+...
T Consensus 169 -l~~~~~~~~~~l~~L~~L~L------~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 169 -LKRVPEGAFDKLTELKTLKL------DNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp -CSCCCTTTTTTCTTCCEEEC------CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred -CcEeChhHhccCCCcCEEEC------CCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 7755555677 899999987 88999987777899999999999999988743
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=2.3e-22 Score=163.57 Aligned_cols=204 Identities=22% Similarity=0.205 Sum_probs=156.0
Q ss_pred ccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCC
Q 040144 21 QLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNF 100 (289)
Q Consensus 21 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 100 (289)
.+.+++++++++++++.+..++.. + .+.++.|++++|.+..... ..+..+++|++|++++|.++.... ...+
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~--~--~~~l~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~--~~~l 76 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPD--L--PKDTTILHLSENLLYTFSL--ATLMPYTRLTQLNLDRAELTKLQV--DGTL 76 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSC--C--CTTCCEEECTTSCCSEEEG--GGGTTCTTCCEEECTTSCCCEEEC--CSCC
T ss_pred cccccCCccEEECCCCCCCcCCCC--C--CCCCCEEEcCCCcCCccCH--HHhhcCCCCCEEECCCCccCcccC--CCCC
Confidence 366788899999998877766532 2 3678899999998877632 267788899999999998877533 2678
Q ss_pred CCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcce
Q 040144 101 SSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKS 179 (289)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~ 179 (289)
++|+.|++++|.++ .++..+..+++|++|++++|.++ .+++..|..+++|++|++++|. +....+..+. +++|+.
T Consensus 77 ~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQ--SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp TTCCEEECCSSCCS--SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE
T ss_pred CcCCEEECCCCcCC--cCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCE
Confidence 88999999998885 55666677888999999999887 4435778888889999999888 6654445555 788887
Q ss_pred eeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCceEEEeecceeeeeeccccccccccccEEEecCCee
Q 040144 180 INLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQL 259 (289)
Q Consensus 180 L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~ 259 (289)
|++ ++|.++...+..+..+++|+.|++++|.++ .+|. .+....+|+.+++.+|++
T Consensus 153 L~L------~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~------------------~ip~-~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 153 LSL------ANNNLTELPAGLLNGLENLDTLLLQENSLY------------------TIPK-GFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp EEC------TTSCCSCCCTTTTTTCTTCCEEECCSSCCC------------------CCCT-TTTTTCCCSEEECCSCCB
T ss_pred EEC------CCCcCCccCHHHhcCcCCCCEEECCCCcCC------------------ccCh-hhcccccCCeEEeCCCCc
Confidence 776 788888766667778888888888888777 4555 566677888888888887
Q ss_pred ee
Q 040144 260 TL 261 (289)
Q Consensus 260 ~~ 261 (289)
..
T Consensus 208 ~C 209 (290)
T 1p9a_G 208 LC 209 (290)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 76
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=6.1e-24 Score=178.42 Aligned_cols=258 Identities=17% Similarity=0.130 Sum_probs=164.1
Q ss_pred EEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCC---cccCCCC-cccEEeccCccccccc-h-hhHhhhcC-CC
Q 040144 6 YLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNF---LWLSGIS-LLEHLDLRYVNLSIAF-D-WLMVANKL-LS 78 (289)
Q Consensus 6 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~l~-~L~~L~l~~~~~~~~~-~-~~~~~~~~-~~ 78 (289)
.+.++.+.+++.+|..+...++|++|++++|.+...+.. ..+..++ +|++|++++|.+.... . +...+... ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 356788888887777666666799999999886665431 2245677 8999999999887752 2 22233333 88
Q ss_pred ccEEEccCCccCCCCcccc----cCC-CCCcEEeccCCCCCCcchhhHh----hc-CCCCCEEEccCceeeeeeC---hh
Q 040144 79 LVELRLSNCQLQHFSPLAT----VNF-SSLTMLDLSHNQFDNSFILSWV----FA-LSHLPFLDLGFNNFQGTID---LE 145 (289)
Q Consensus 79 L~~L~l~~~~l~~~~~~~l----~~~-~~L~~L~l~~~~~~~~~~~~~~----~~-~~~L~~L~l~~n~~~~~~~---~~ 145 (289)
|++|++++|.++...+..+ ..+ ++|+.|++++|.++ ......+ .. ..+|++|++++|.+.+... +.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS-SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG-GSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCC-cHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 9999999998887655533 334 78999999999886 3333222 23 3589999999998873220 33
Q ss_pred hhcCCC-CccEEeCCCCCcccCCCCcccc-----c-cCcceeeccccccccCCccccc----ccccccC-CCCCcEEEcc
Q 040144 146 ALGNLT-SINRLDLSLNTGLTGRIPRSMA-----L-CNLKSINLQESLDMRSSSIYGH----LTDQLGQ-FRNLVTFNLV 213 (289)
Q Consensus 146 ~~~~~~-~L~~L~l~~n~~~~~~~~~~~~-----~-~~L~~L~l~~~l~l~~~~~~~~----~~~~l~~-~~~L~~L~l~ 213 (289)
.+...+ +|++|++++|. +.+..+..++ . ++|++|++ ++|.++.. ++..+.. .++|+.|+++
T Consensus 161 ~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L------s~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls 233 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDL------SANLLGLKSYAELAYIFSSIPNHVVSLNLC 233 (362)
T ss_dssp HHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEEC------TTSCGGGSCHHHHHHHHHHSCTTCCEEECC
T ss_pred HHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEEC------CCCCCChhHHHHHHHHHhcCCCCceEEECc
Confidence 445554 89999999988 6655554433 3 57887776 78888753 3444544 4589999999
Q ss_pred CCeeeecCCCceEEEeecceeeeeeccccccccccccEEEecCCeeee-------ccCCCccccccccEEecccccCcc
Q 040144 214 NNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTL-------EVKHDWIPHFQLVALGLHSCYIGS 285 (289)
Q Consensus 214 ~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-------~~~~~~~~~~~L~~l~l~~n~~~~ 285 (289)
+|.+++..+. .+.. .+..+++|+.|++++|.+.+ .++..+..+++|+.|++++|++.+
T Consensus 234 ~N~l~~~~~~-------------~l~~-~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 234 LNCLHGPSLE-------------NLKL-LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp SSCCCCCCHH-------------HHHH-TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred CCCCCcHHHH-------------HHHH-HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 8888754331 1222 33445555555555555221 122344455555555555555543
No 77
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1.1e-24 Score=184.45 Aligned_cols=246 Identities=15% Similarity=0.083 Sum_probs=151.6
Q ss_pred CCCccCCCCCCcEEeCCCccccccCCC---cccCCCCcccEEeccCcccccc----c----hhhHhhhcCCCccEEEccC
Q 040144 18 IPQQLGNLSNLQFLDLSSKYLLYVDNF---LWLSGISLLEHLDLRYVNLSIA----F----DWLMVANKLLSLVELRLSN 86 (289)
Q Consensus 18 ~~~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~----~----~~~~~~~~~~~L~~L~l~~ 86 (289)
++..+..+++|++|++++|.+...... ..+..+++|++|++++|.+... + .+...+..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 445566677888888888765443211 1145677888888877644321 1 1122346778888888888
Q ss_pred CccCCC----CcccccCCCCCcEEeccCCCCCCcchhh----HhhcC---------CCCCEEEccCceeee-eeCh---h
Q 040144 87 CQLQHF----SPLATVNFSSLTMLDLSHNQFDNSFILS----WVFAL---------SHLPFLDLGFNNFQG-TIDL---E 145 (289)
Q Consensus 87 ~~l~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~----~~~~~---------~~L~~L~l~~n~~~~-~~~~---~ 145 (289)
|.+... .+..+..+++|+.|++++|.++ ...+. .+..+ ++|++|++++|.+.. .+ + .
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~-~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~ 181 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG-PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM-KEWAK 181 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH-HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH-HHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC-HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH-HHHHH
Confidence 877763 3345567788888888888775 22222 22233 778888888887752 22 2 3
Q ss_pred hhcCCCCccEEeCCCCCcccC-----CCCcccc-ccCcceeeccccccccCCccc----ccccccccCCCCCcEEEccCC
Q 040144 146 ALGNLTSINRLDLSLNTGLTG-----RIPRSMA-LCNLKSINLQESLDMRSSSIY----GHLTDQLGQFRNLVTFNLVNN 215 (289)
Q Consensus 146 ~~~~~~~L~~L~l~~n~~~~~-----~~~~~~~-~~~L~~L~l~~~l~l~~~~~~----~~~~~~l~~~~~L~~L~l~~n 215 (289)
.+..+++|++|++++|. +.. ..+..+. +++|+.|++ ++|.++ ..++..+..+++|+.|++++|
T Consensus 182 ~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~L------s~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n 254 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDL------QDNTFTHLGSSALAIALKSWPNLRELGLNDC 254 (386)
T ss_dssp HHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEEC------CSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred HHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEEC------cCCCCCcHHHHHHHHHHccCCCcCEEECCCC
Confidence 56677788888888887 542 1232555 777777775 777775 456667777888888888888
Q ss_pred eeeecCCCceEEEeecceeeeeeccccc--cccccccEEEecCCeeee----ccCCCc-cccccccEEecccccCccC
Q 040144 216 SIVGFIPWSFELHIYDNKLNVTLFELHF--ANLIEMSWFRVGGNQLTL----EVKHDW-IPHFQLVALGLHSCYIGSR 286 (289)
Q Consensus 216 ~~~~~~~~~~~L~l~~n~~~~~~~~~~~--~~~~~L~~l~l~~n~~~~----~~~~~~-~~~~~L~~l~l~~n~~~~~ 286 (289)
.+++.... .++. .+ +.+++|+.|++++|++++ .+|..+ .++++|+.|++++|++++.
T Consensus 255 ~i~~~~~~-------------~l~~-~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 255 LLSARGAA-------------AVVD-AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp CCCHHHHH-------------HHHH-HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred CCchhhHH-------------HHHH-HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 77643110 1233 33 236667777777776665 345544 4456677777777766543
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=2.7e-21 Score=157.18 Aligned_cols=199 Identities=26% Similarity=0.269 Sum_probs=164.2
Q ss_pred CCCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCcc
Q 040144 1 MGNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLV 80 (289)
Q Consensus 1 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 80 (289)
+++++++++.++.++. +|..+. +++++|++++|.+....... +..+++|++|++++|.+...+. ...+++|+
T Consensus 9 l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~ 80 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLAT-LMPYTRLTQLNLDRAELTKLQV----DGTLPVLG 80 (290)
T ss_dssp STTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGG-GTTCTTCCEEECTTSCCCEEEC----CSCCTTCC
T ss_pred cCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHH-hhcCCCCCEEECCCCccCcccC----CCCCCcCC
Confidence 4688999999999884 665553 68999999999877665433 7889999999999999887654 26889999
Q ss_pred EEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCC
Q 040144 81 ELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSL 160 (289)
Q Consensus 81 ~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 160 (289)
+|++++|.+... +..+..+++|+.|++++|.++ ...+..+..+++|++|++++|.+. .+++..|..+++|+.|++++
T Consensus 81 ~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 81 TLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp EEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTT
T ss_pred EEECCCCcCCcC-chhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCC
Confidence 999999999865 556788999999999999997 444566888999999999999998 45467788999999999999
Q ss_pred CCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeee
Q 040144 161 NTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIV 218 (289)
Q Consensus 161 n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 218 (289)
|. +....+..+. +++|+.|++ ++|.+. .+|..+...++|+.+++++|.+.
T Consensus 158 N~-l~~l~~~~~~~l~~L~~L~L------~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 158 NN-LTELPAGLLNGLENLDTLLL------QENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SC-CSCCCTTTTTTCTTCCEEEC------CSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred Cc-CCccCHHHhcCcCCCCEEEC------CCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 99 7644444556 899998886 889998 56666777889999999999886
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=7.3e-22 Score=162.29 Aligned_cols=220 Identities=14% Similarity=0.067 Sum_probs=168.2
Q ss_pred CcccEEeccCcccccc-chhhHhhhcCCCccEEEccCCccCCCCcccc--cCCCCCcEEeccCCCCCCcchh----hHhh
Q 040144 51 SLLEHLDLRYVNLSIA-FDWLMVANKLLSLVELRLSNCQLQHFSPLAT--VNFSSLTMLDLSHNQFDNSFIL----SWVF 123 (289)
Q Consensus 51 ~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~----~~~~ 123 (289)
..++.+.+.++.+... .........+++|++|++++|.+....+..+ ..+++|++|++++|.++ ...+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWA-TGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCS-STTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccccc-chhhhhHHHHhh
Confidence 3577888887766543 1111123345679999999999998877777 88999999999999987 3222 3345
Q ss_pred cCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCC--C--Ccccc-ccCcceeeccccccccCCccccccc
Q 040144 124 ALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGR--I--PRSMA-LCNLKSINLQESLDMRSSSIYGHLT 198 (289)
Q Consensus 124 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~--~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~ 198 (289)
.+++|++|++++|.+.+.. +..++.+++|++|++++|. +.+. . +..+. +++|++|++ ++|.++....
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~~L~L------s~N~l~~l~~ 214 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFS-CEQVRAFPALTSLDLSDNP-GLGERGLMAALCPHKFPAIQNLAL------RNTGMETPTG 214 (310)
T ss_dssp BCSCCCEEEEECCSSCCCC-TTSCCCCTTCCEEECCSCT-TCHHHHHHTTSCTTSSCCCCSCBC------CSSCCCCHHH
T ss_pred hccCCCEEEeeCCCcchhh-HHHhccCCCCCEEECCCCC-CccchhhhHHHhhhcCCCCCEEEC------CCCCCCchHH
Confidence 7899999999999997443 7789999999999999998 5431 2 22234 788888876 8888863222
Q ss_pred --c-cccCCCCCcEEEccCCeeeecCCCce----------EEEeecceeeeeeccccccccccccEEEecCCeeeeccCC
Q 040144 199 --D-QLGQFRNLVTFNLVNNSIVGFIPWSF----------ELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKH 265 (289)
Q Consensus 199 --~-~l~~~~~L~~L~l~~n~~~~~~~~~~----------~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 265 (289)
. .++.+++|++|++++|.+++..|..+ .|++++|.++ .+|. .+. ++|+.|++++|++++. |.
T Consensus 215 ~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~-~~~--~~L~~L~Ls~N~l~~~-~~ 289 (310)
T 4glp_A 215 VCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPK-GLP--AKLRVLDLSSNRLNRA-PQ 289 (310)
T ss_dssp HHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCS-CCC--SCCSCEECCSCCCCSC-CC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhh-hhc--CCCCEEECCCCcCCCC-ch
Confidence 1 35788999999999999987754322 8999999999 7887 554 8999999999999963 43
Q ss_pred CccccccccEEecccccCcc
Q 040144 266 DWIPHFQLVALGLHSCYIGS 285 (289)
Q Consensus 266 ~~~~~~~L~~l~l~~n~~~~ 285 (289)
+..+++|+.|++++|++++
T Consensus 290 -~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 290 -PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp -TTSCCCCSCEECSSTTTSC
T ss_pred -hhhCCCccEEECcCCCCCC
Confidence 6788999999999999975
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=3e-23 Score=175.74 Aligned_cols=242 Identities=17% Similarity=0.158 Sum_probs=182.2
Q ss_pred CCCCcEEEccCCcccccCC----CccCCCCCCcEEeCCCccccccCC--C-c------ccCCCCcccEEeccCcccccc-
Q 040144 1 MGNLRYLNFSKTRICGIIP----QQLGNLSNLQFLDLSSKYLLYVDN--F-L------WLSGISLLEHLDLRYVNLSIA- 66 (289)
Q Consensus 1 ~~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~--~-~------~~~~l~~L~~L~l~~~~~~~~- 66 (289)
+++|++|+|++|.+++..+ ..+..+++|++|++++|....... . . .+..+++|++|++++|.+...
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 4789999999999886543 447789999999999975432211 0 0 135789999999999998773
Q ss_pred -chhhHhhhcCCCccEEEccCCccCCCCccccc----CC---------CCCcEEeccCCCCCCcchh---hHhhcCCCCC
Q 040144 67 -FDWLMVANKLLSLVELRLSNCQLQHFSPLATV----NF---------SSLTMLDLSHNQFDNSFIL---SWVFALSHLP 129 (289)
Q Consensus 67 -~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~----~~---------~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~ 129 (289)
..++..+..+++|++|++++|.++...+..+. .+ ++|+.|++++|.+++...+ ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 12344778899999999999998654333333 33 8999999999999744555 3566889999
Q ss_pred EEEccCceeeee----eChhhhcCCCCccEEeCCCCCccc----CCCCcccc-ccCcceeeccccccccCCccccc----
Q 040144 130 FLDLGFNNFQGT----IDLEALGNLTSINRLDLSLNTGLT----GRIPRSMA-LCNLKSINLQESLDMRSSSIYGH---- 196 (289)
Q Consensus 130 ~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~---- 196 (289)
+|++++|.+... +.+..+..+++|+.|++++|. +. ..+|..+. +++|+.|++ ++|.+++.
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L------~~n~i~~~~~~~ 263 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGL------NDCLLSARGAAA 263 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEEC------TTCCCCHHHHHH
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEEC------CCCCCchhhHHH
Confidence 999999988721 213377889999999999998 64 45666777 889998886 88988765
Q ss_pred cccccc--CCCCCcEEEccCCeeeecCCCceEEEeecceeeeeeccccc-cccccccEEEecCCeeeecc
Q 040144 197 LTDQLG--QFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHF-ANLIEMSWFRVGGNQLTLEV 263 (289)
Q Consensus 197 ~~~~l~--~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~-~~~~~L~~l~l~~n~~~~~~ 263 (289)
++..+. .+++|+.|++++|.+++... ..++. .+ .++++|+.|++++|++++..
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~-------------~~l~~-~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAV-------------RTLKT-VIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHH-------------HHHHH-HHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHH-------------HHHHH-HHHhcCCCceEEEccCCcCCcch
Confidence 455663 38999999999998884200 02555 44 56899999999999998654
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=7.2e-21 Score=156.11 Aligned_cols=190 Identities=24% Similarity=0.321 Sum_probs=152.8
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
++|++|++.+|.++. ++ .+..+++|++|++++|.+...+. +..+++|++|++++|.+...+ .+..+++|++
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~~~~----~~~~l~~L~~ 111 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNVS----AIAGLQSIKT 111 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSCCG----GGTTCTTCCE
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCcCCCch----hhcCCCCCCE
Confidence 578999999998874 44 58889999999999988776654 678899999999999877653 5778899999
Q ss_pred EEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCC
Q 040144 82 LRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLN 161 (289)
Q Consensus 82 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 161 (289)
|++++|.+.... .+..+++|+.|++++|.++ . .+. +..+++|++|++++|.+. .+ +. +..+++|+.|++++|
T Consensus 112 L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~-~-~~~-l~~l~~L~~L~l~~n~l~-~~-~~-l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQIT-N-ISP-LAGLTNLQYLSIGNAQVS-DL-TP-LANLSKLTTLKADDN 183 (308)
T ss_dssp EECTTSCCCCCG--GGTTCTTCCEEECCSSCCC-C-CGG-GGGCTTCCEEECCSSCCC-CC-GG-GTTCTTCCEEECCSS
T ss_pred EECCCCCCCCch--hhcCCCCCCEEECCCCccC-c-Ccc-ccCCCCccEEEccCCcCC-CC-hh-hcCCCCCCEEECCCC
Confidence 999999988753 3788899999999999886 2 333 778899999999999887 34 33 888899999999999
Q ss_pred CcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeee
Q 040144 162 TGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVG 219 (289)
Q Consensus 162 ~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 219 (289)
. +.+ .+. +. +++|+.|++ ++|.+.+..+ +..+++|+.|++++|.+++
T Consensus 184 ~-l~~-~~~-l~~l~~L~~L~L------~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 184 K-ISD-ISP-LASLPNLIEVHL------KNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp C-CCC-CGG-GGGCTTCCEEEC------TTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred c-cCc-Chh-hcCCCCCCEEEc------cCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 8 653 333 56 888888886 8888886553 7889999999999998874
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=5.1e-21 Score=156.98 Aligned_cols=194 Identities=22% Similarity=0.286 Sum_probs=145.7
Q ss_pred cCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCC
Q 040144 22 LGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFS 101 (289)
Q Consensus 22 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 101 (289)
..++++|++|++++|.+...+. +..+++|++|++++|.+...+. +..+++|++|++++|.+... ..+..++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~---~~~l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~~n~l~~~--~~~~~l~ 107 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEG---VQYLNNLIGLELKDNQITDLAP----LKNLTKITELELSGNPLKNV--SAIAGLQ 107 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTT---GGGCTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCCCSCC--GGGTTCT
T ss_pred HHHcCCcCEEEeeCCCccCchh---hhccCCCCEEEccCCcCCCChh----HccCCCCCEEEccCCcCCCc--hhhcCCC
Confidence 3457788888888887666542 6678888888888888776542 67788888888888887765 3577888
Q ss_pred CCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCccee
Q 040144 102 SLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSI 180 (289)
Q Consensus 102 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L 180 (289)
+|+.|++++|.++ . ++ .+..+++|++|++++|.+.+ + + .++.+++|+.|++++|. +.+ .+. +. +++|+.|
T Consensus 108 ~L~~L~l~~n~l~-~-~~-~l~~l~~L~~L~l~~n~l~~-~-~-~l~~l~~L~~L~l~~n~-l~~-~~~-l~~l~~L~~L 178 (308)
T 1h6u_A 108 SIKTLDLTSTQIT-D-VT-PLAGLSNLQVLYLDLNQITN-I-S-PLAGLTNLQYLSIGNAQ-VSD-LTP-LANLSKLTTL 178 (308)
T ss_dssp TCCEEECTTSCCC-C-CG-GGTTCTTCCEEECCSSCCCC-C-G-GGGGCTTCCEEECCSSC-CCC-CGG-GTTCTTCCEE
T ss_pred CCCEEECCCCCCC-C-ch-hhcCCCCCCEEECCCCccCc-C-c-cccCCCCccEEEccCCc-CCC-Chh-hcCCCCCCEE
Confidence 8888888888886 2 33 36778888888888888873 3 2 27788888888888887 553 333 55 7888877
Q ss_pred eccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCceEEEeecceeeeeeccccccccccccEEEecCCeee
Q 040144 181 NLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLT 260 (289)
Q Consensus 181 ~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 260 (289)
++ ++|.+++..+ +..+++|+.|++++|.+. .++. +..+++|+.|++++|+++
T Consensus 179 ~l------~~n~l~~~~~--l~~l~~L~~L~L~~N~l~------------------~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 179 KA------DDNKISDISP--LASLPNLIEVHLKNNQIS------------------DVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp EC------CSSCCCCCGG--GGGCTTCCEEECTTSCCC------------------BCGG--GTTCTTCCEEEEEEEEEE
T ss_pred EC------CCCccCcChh--hcCCCCCCEEEccCCccC------------------cccc--ccCCCCCCEEEccCCeee
Confidence 76 7777775544 677888888888888776 2332 678899999999999998
Q ss_pred e
Q 040144 261 L 261 (289)
Q Consensus 261 ~ 261 (289)
+
T Consensus 231 ~ 231 (308)
T 1h6u_A 231 N 231 (308)
T ss_dssp C
T ss_pred c
Confidence 6
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=3.8e-22 Score=165.81 Aligned_cols=236 Identities=20% Similarity=0.170 Sum_probs=178.0
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
++++.+++.++.+++..+. +..+++|++|++++|.+........+..+++|++|++++|.+... .+..+..+++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~--~~~~l~~~~~L~~ 146 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP--IVNTLAKNSNLVR 146 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHH--HHHHHTTCTTCSE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHH--HHHHHhcCCCCCE
Confidence 6789999999999876555 678999999999998765432222367899999999999987654 2236778999999
Q ss_pred EEccCC-ccCCC-CcccccCCCCCcEEeccCC-CCCCcchhhHhhcCC-CCCEEEccCc--eee-eeeChhhhcCCCCcc
Q 040144 82 LRLSNC-QLQHF-SPLATVNFSSLTMLDLSHN-QFDNSFILSWVFALS-HLPFLDLGFN--NFQ-GTIDLEALGNLTSIN 154 (289)
Q Consensus 82 L~l~~~-~l~~~-~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~-~L~~L~l~~n--~~~-~~~~~~~~~~~~~L~ 154 (289)
|++++| .++.. .+..+..+++|++|++++| .+++..++..+..++ +|++|++++| .++ +.+ +..+..+++|+
T Consensus 147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l-~~~~~~~~~L~ 225 (336)
T 2ast_B 147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL-STLVRRCPNLV 225 (336)
T ss_dssp EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHH-HHHHHHCTTCS
T ss_pred EECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHH-HHHHhhCCCCC
Confidence 999999 56642 3445678999999999999 887334677788899 9999999999 454 234 66778899999
Q ss_pred EEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCc-ccccccccccCCCCCcEEEccCCeeeecCCCceEEEeecc
Q 040144 155 RLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSS-IYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDN 232 (289)
Q Consensus 155 ~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~-~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n 232 (289)
+|++++|..+++..+..+. +++|+.|++ ++|. ++......++.+++|+.|++++| +...
T Consensus 226 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l------~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~------------ 286 (336)
T 2ast_B 226 HLDLSDSVMLKNDCFQEFFQLNYLQHLSL------SRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG------------ 286 (336)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEEC------TTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT------------
T ss_pred EEeCCCCCcCCHHHHHHHhCCCCCCEeeC------CCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH------------
Confidence 9999999834455666777 999999987 6663 33333346788999999999987 3311
Q ss_pred eeeeeecccccccc-ccccEEEecCCeeeeccCCCccc
Q 040144 233 KLNVTLFELHFANL-IEMSWFRVGGNQLTLEVKHDWIP 269 (289)
Q Consensus 233 ~~~~~~~~~~~~~~-~~L~~l~l~~n~~~~~~~~~~~~ 269 (289)
.+..+ .++..|++++|++++..|..++.
T Consensus 287 ---------~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 287 ---------TLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp ---------CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred ---------HHHHHHhhCcceEEecccCccccCCcccc
Confidence 12222 34666678999999877776654
No 84
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=3e-20 Score=165.18 Aligned_cols=227 Identities=19% Similarity=0.144 Sum_probs=152.6
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
++|++|++++|.++. +|. .+++|++|++++|.+..++. .+++|++|++++|.+...+. .+++|+.
T Consensus 61 ~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~l~~l~~------~l~~L~~ 125 (622)
T 3g06_A 61 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV-----LPPGLLELSIFSNPLTHLPA------LPSGLCK 125 (622)
T ss_dssp TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSCCCC-----CCTTCCEEEECSCCCCCCCC------CCTTCCE
T ss_pred CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCcCCC-----CCCCCCEEECcCCcCCCCCC------CCCCcCE
Confidence 467777777777763 444 45677777777776554432 45666666666666555432 2344455
Q ss_pred EEccCCccCCCCcccc-----------------cCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeCh
Q 040144 82 LRLSNCQLQHFSPLAT-----------------VNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDL 144 (289)
Q Consensus 82 L~l~~~~l~~~~~~~l-----------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 144 (289)
|++++|.++.+.. .+ ..+++|+.|++++|.++ .++ ..+++|+.|++++|.+. .+ +
T Consensus 126 L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~--~l~---~~~~~L~~L~Ls~N~l~-~l-~ 197 (622)
T 3g06_A 126 LWIFGNQLTSLPV-LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLT--SLP---MLPSGLQELSVSDNQLA-SL-P 197 (622)
T ss_dssp EECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS--CCC---CCCTTCCEEECCSSCCS-CC-C
T ss_pred EECCCCCCCcCCC-CCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCC--CCc---ccCCCCcEEECCCCCCC-CC-C
Confidence 5555544443221 10 12244555555555553 222 23578999999999887 44 3
Q ss_pred hhhcCCCCccEEeCCCCCcccCCCCccccccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCc
Q 040144 145 EALGNLTSINRLDLSLNTGLTGRIPRSMALCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWS 224 (289)
Q Consensus 145 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~ 224 (289)
. ..++|+.|++++|. +. .+|.. +++|+.|++ ++|.+++ +| ..+++|+.|++++|.+++ +|..
T Consensus 198 ~---~~~~L~~L~L~~N~-l~-~l~~~--~~~L~~L~L------s~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~~ 259 (622)
T 3g06_A 198 T---LPSELYKLWAYNNR-LT-SLPAL--PSGLKELIV------SGNRLTS-LP---VLPSELKELMVSGNRLTS-LPML 259 (622)
T ss_dssp C---CCTTCCEEECCSSC-CS-SCCCC--CTTCCEEEC------CSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC
T ss_pred C---ccchhhEEECcCCc-cc-ccCCC--CCCCCEEEc------cCCccCc-CC---CCCCcCcEEECCCCCCCc-CCcc
Confidence 3 34789999999998 55 44432 578888886 8888886 44 456899999999999984 4433
Q ss_pred e----EEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCccccc
Q 040144 225 F----ELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHF 271 (289)
Q Consensus 225 ~----~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~ 271 (289)
. .|++++|.++ .+|. .+.++++|+.|++++|++.+..+..+..++
T Consensus 260 ~~~L~~L~Ls~N~L~-~lp~-~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 260 PSGLLSLSVYRNQLT-RLPE-SLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CTTCCEEECCSSCCC-SCCG-GGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred cccCcEEeCCCCCCC-cCCH-HHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 3 8999999999 7888 899999999999999999987766555443
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=4.6e-20 Score=146.95 Aligned_cols=179 Identities=21% Similarity=0.230 Sum_probs=125.9
Q ss_pred cccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEE
Q 040144 52 LLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFL 131 (289)
Q Consensus 52 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 131 (289)
..++++++++.+...+. .+ .+.++.|++++|.+....+..+..+++|++|++++|.++ ...+..+..+++|++|
T Consensus 15 ~~~~l~~~~~~l~~~p~---~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPS---GI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTL 88 (251)
T ss_dssp GGTEEECTTCCCSSCCS---CC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCeEEecCCCCccccCC---CC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEE
Confidence 46677777777766543 22 257788888888887777767777888888888888776 4445556677788888
Q ss_pred EccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEE
Q 040144 132 DLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTF 210 (289)
Q Consensus 132 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L 210 (289)
++++|.+. .+++..+..+++|++|++++|. +....+..+. +++|+.|++ ++|.+.+..+..+..+++|+.|
T Consensus 89 ~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 89 GLANNQLA-SLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRL------NTNQLQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp ECTTSCCC-CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC------CSSCCCCCCTTTTTTCTTCCEE
T ss_pred ECCCCccc-ccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEEC------cCCcCCccCHHHcCcCcCCCEE
Confidence 88888877 3435667778888888888887 6544444455 777777765 7777776666667777777777
Q ss_pred EccCCeeeecCCCceEEEeecceeeeeeccccccccccccEEEecCCeeeec
Q 040144 211 NLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLE 262 (289)
Q Consensus 211 ~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 262 (289)
++++|.++ .++...+.++++|+.|++++|++...
T Consensus 161 ~L~~N~l~------------------~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 161 SLSTNQLQ------------------SVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ECCSSCCS------------------CCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ECCCCcCC------------------ccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 77777666 22322566778888888888877653
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=8.6e-21 Score=155.89 Aligned_cols=219 Identities=21% Similarity=0.155 Sum_probs=129.0
Q ss_pred CcEEEccCCcccccCCC---ccCCCCCCcEEeCCCccccccCCCccc-CCCCcccEEeccCccccccch-hh-HhhhcCC
Q 040144 4 LRYLNFSKTRICGIIPQ---QLGNLSNLQFLDLSSKYLLYVDNFLWL-SGISLLEHLDLRYVNLSIAFD-WL-MVANKLL 77 (289)
Q Consensus 4 L~~L~l~~~~~~~~~~~---~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~-~~-~~~~~~~ 77 (289)
++.+.+.++.++..... .+..+++|++|++++|.+....+...+ ..+++|++|++++|.+..... +. ..+..++
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~ 145 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP 145 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS
T ss_pred eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc
Confidence 45666666655421110 112245577777777765544433312 567777777777777665311 11 1334667
Q ss_pred CccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcc--hh--hHhhcCCCCCEEEccCceeeeeeChh----hhcC
Q 040144 78 SLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSF--IL--SWVFALSHLPFLDLGFNNFQGTIDLE----ALGN 149 (289)
Q Consensus 78 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~--~~~~~~~~L~~L~l~~n~~~~~~~~~----~~~~ 149 (289)
+|++|++++|.+....+..++.+++|++|++++|.+. .. .+ ..+..+++|++|++++|.++ .+ +. .++.
T Consensus 146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l-~~~~~~l~~~ 222 (310)
T 4glp_A 146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGL-GERGLMAALCPHKFPAIQNLALRNTGME-TP-TGVCAALAAA 222 (310)
T ss_dssp CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTC-HHHHHHTTSCTTSSCCCCSCBCCSSCCC-CH-HHHHHHHHHH
T ss_pred CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCc-cchhhhHHHhhhcCCCCCEEECCCCCCC-ch-HHHHHHHHhc
Confidence 7777777777777666666777777777777777654 21 11 11245667777777777775 22 22 2456
Q ss_pred CCCccEEeCCCCCcccCCCCcccc-c---cCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeec-CCCc
Q 040144 150 LTSINRLDLSLNTGLTGRIPRSMA-L---CNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGF-IPWS 224 (289)
Q Consensus 150 ~~~L~~L~l~~n~~~~~~~~~~~~-~---~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~-~~~~ 224 (289)
+++|++|++++|. +.+..|..+. + ++|++|++ ++|.++ .+|..+. ++|+.|++++|.+++. .+..
T Consensus 223 l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~L------s~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~ 292 (310)
T 4glp_A 223 GVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNL------SFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQPDE 292 (310)
T ss_dssp TCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEEC------CSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCTTS
T ss_pred CCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEEC------CCCCCC-chhhhhc--CCCCEEECCCCcCCCCchhhh
Confidence 6777777777777 6655555555 4 46666664 677777 4444443 6777777777777652 2222
Q ss_pred e----EEEeecceee
Q 040144 225 F----ELHIYDNKLN 235 (289)
Q Consensus 225 ~----~L~l~~n~~~ 235 (289)
+ .|++++|.++
T Consensus 293 l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 293 LPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCCCSCEECSSTTTS
T ss_pred CCCccEEECcCCCCC
Confidence 2 6777777654
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=2.6e-20 Score=147.29 Aligned_cols=177 Identities=15% Similarity=0.159 Sum_probs=91.6
Q ss_pred CCcEEeCCCccccccCCCcccCCCCcccEEeccCcc-ccccchhhHhhhcCCCccEEEccC-CccCCCCcccccCCCCCc
Q 040144 27 NLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVN-LSIAFDWLMVANKLLSLVELRLSN-CQLQHFSPLATVNFSSLT 104 (289)
Q Consensus 27 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~l~~~~~L~ 104 (289)
++++|++++|.+..++... +.++++|++|++++|. +...+. ..+..+++|++|++++ |.++...+..+..+++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~-~~~l~~L~~L~l~~n~~l~~i~~--~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHA-FSNLPNISRIYVSIDVTLQQLES--HSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp TCCEEEEESCCCSEECTTT-TTTCTTCCEEEEECCSSCCEECT--TTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred cccEEEEeCCcceEECHHH-ccCCCCCcEEeCCCCCCcceeCH--hHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 5555666555544444322 4455556666666554 444321 1344555666666655 555555444555556666
Q ss_pred EEeccCCCCCCcchhhHhhcCCCCC---EEEccCc-eeeeeeChhhhcCCCCcc-EEeCCCCCcccCCCCcccc-ccCcc
Q 040144 105 MLDLSHNQFDNSFILSWVFALSHLP---FLDLGFN-NFQGTIDLEALGNLTSIN-RLDLSLNTGLTGRIPRSMA-LCNLK 178 (289)
Q Consensus 105 ~L~l~~~~~~~~~~~~~~~~~~~L~---~L~l~~n-~~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~-~~~L~ 178 (289)
.|++++|.++ .++. +..+++|+ +|++++| .+. .+++..|..+++|+ ++++++|. +. .+|.... .++|+
T Consensus 109 ~L~l~~n~l~--~lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~-l~-~i~~~~~~~~~L~ 182 (239)
T 2xwt_C 109 FLGIFNTGLK--MFPD-LTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNG-FT-SVQGYAFNGTKLD 182 (239)
T ss_dssp EEEEEEECCC--SCCC-CTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCC-CC-EECTTTTTTCEEE
T ss_pred EEeCCCCCCc--cccc-cccccccccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCC-Cc-ccCHhhcCCCCCC
Confidence 6666655554 2332 44445555 6666665 554 33244455556666 66666555 33 3333322 44455
Q ss_pred eeeccccccccCCc-ccccccccccCC-CCCcEEEccCCeee
Q 040144 179 SINLQESLDMRSSS-IYGHLTDQLGQF-RNLVTFNLVNNSIV 218 (289)
Q Consensus 179 ~L~l~~~l~l~~~~-~~~~~~~~l~~~-~~L~~L~l~~n~~~ 218 (289)
.|++ ++|. ++...+..+..+ ++|+.|++++|.++
T Consensus 183 ~L~L------~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 183 AVYL------NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp EEEC------TTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred EEEc------CCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 4443 5553 554444555555 56666666666555
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=8.9e-22 Score=165.22 Aligned_cols=241 Identities=20% Similarity=0.193 Sum_probs=175.4
Q ss_pred CCCcEEEccCCcccccCC----CccCCCC-CCcEEeCCCccccccCCCcccCCC-----CcccEEeccCccccccc--hh
Q 040144 2 GNLRYLNFSKTRICGIIP----QQLGNLS-NLQFLDLSSKYLLYVDNFLWLSGI-----SLLEHLDLRYVNLSIAF--DW 69 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~--~~ 69 (289)
++|++|++++|.+++..+ ..+..++ +|++|++++|.+....... +..+ +.|++|++++|.+.... .+
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~-l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE-LVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHH-HHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHH-HHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 359999999999987666 6788898 9999999999876654322 3332 89999999999987652 22
Q ss_pred hHhhhcC-CCccEEEccCCccCCCCccccc----C-CCCCcEEeccCCCCCCc---chhhHhhcCC-CCCEEEccCceee
Q 040144 70 LMVANKL-LSLVELRLSNCQLQHFSPLATV----N-FSSLTMLDLSHNQFDNS---FILSWVFALS-HLPFLDLGFNNFQ 139 (289)
Q Consensus 70 ~~~~~~~-~~L~~L~l~~~~l~~~~~~~l~----~-~~~L~~L~l~~~~~~~~---~~~~~~~~~~-~L~~L~l~~n~~~ 139 (289)
...+..+ ++|++|++++|.++...+..+. . ..+|++|++++|.+++. .++..+..++ +|++|++++|.++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 3345566 8999999999999887664443 3 36999999999998732 2233445555 9999999999987
Q ss_pred eeeChh----hhcCC-CCccEEeCCCCCcccCC----CCcccc--ccCcceeeccccccccCCccccccc----ccccCC
Q 040144 140 GTIDLE----ALGNL-TSINRLDLSLNTGLTGR----IPRSMA--LCNLKSINLQESLDMRSSSIYGHLT----DQLGQF 204 (289)
Q Consensus 140 ~~~~~~----~~~~~-~~L~~L~l~~n~~~~~~----~~~~~~--~~~L~~L~l~~~l~l~~~~~~~~~~----~~l~~~ 204 (289)
+.. +. .+... ++|++|++++|. +.+. ++..+. .++|+.|++ ++|.+++..+ ..+..+
T Consensus 181 ~~~-~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~L------s~N~l~~~~~~~l~~~~~~l 252 (362)
T 3goz_A 181 SKN-CAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNL------CLNCLHGPSLENLKLLKDSL 252 (362)
T ss_dssp GSC-HHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEEC------CSSCCCCCCHHHHHHTTTTT
T ss_pred hhh-HHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEEC------cCCCCCcHHHHHHHHHHhcC
Confidence 443 43 34445 599999999999 6653 333444 348998886 8899886544 345678
Q ss_pred CCCcEEEccCCeeeecCCCceEEEeecceeeeeeccccccccccccEEEecCCeeeec
Q 040144 205 RNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLE 262 (289)
Q Consensus 205 ~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 262 (289)
++|+.|++++|.+.+..+. .+ ..++. .+.++++|+.|++++|++.+.
T Consensus 253 ~~L~~L~L~~n~l~~i~~~---------~~-~~l~~-~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 253 KHLQTVYLDYDIVKNMSKE---------QC-KALGA-AFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TTCSEEEEEHHHHTTCCHH---------HH-HHHHT-TSTTCCEEEEECTTSCBCCGG
T ss_pred CCccEEEeccCCccccCHH---------HH-HHHHH-HhccCCceEEEecCCCcCCCc
Confidence 9999999999985522111 11 13444 667788888999998888765
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=1.6e-20 Score=148.57 Aligned_cols=197 Identities=17% Similarity=0.153 Sum_probs=103.3
Q ss_pred cccEEeccCccccccchhhHhhhcCCCccEEEccCCc-cCCCCcccccCCCCCcEEeccC-CCCCCcchhhHhhcCCCCC
Q 040144 52 LLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQ-LQHFSPLATVNFSSLTMLDLSH-NQFDNSFILSWVFALSHLP 129 (289)
Q Consensus 52 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~ 129 (289)
.+++|++++|.+...+. ..+..+++|++|++++|. ++.+.+..+..+++|+.|++++ |.++ ...+..+..+++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~--~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPS--HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLK 108 (239)
T ss_dssp TCCEEEEESCCCSEECT--TTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCC
T ss_pred cccEEEEeCCcceEECH--HHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCC
Confidence 45555555555554422 134455555555555554 5444444455555555555555 5554 22223344455555
Q ss_pred EEEccCceeeeeeChhhhcCCCCcc---EEeCCCC-CcccCCCCcccc-ccCcc-eeeccccccccCCcccccccccccC
Q 040144 130 FLDLGFNNFQGTIDLEALGNLTSIN---RLDLSLN-TGLTGRIPRSMA-LCNLK-SINLQESLDMRSSSIYGHLTDQLGQ 203 (289)
Q Consensus 130 ~L~l~~n~~~~~~~~~~~~~~~~L~---~L~l~~n-~~~~~~~~~~~~-~~~L~-~L~l~~~l~l~~~~~~~~~~~~l~~ 203 (289)
+|++++|.+.+ + +. +..+++|+ ++++++| . +....+..+. +++|+ .|++ ++|.++...+..+..
T Consensus 109 ~L~l~~n~l~~-l-p~-~~~l~~L~~L~~L~l~~N~~-l~~i~~~~~~~l~~L~~~L~l------~~n~l~~i~~~~~~~ 178 (239)
T 2xwt_C 109 FLGIFNTGLKM-F-PD-LTKVYSTDIFFILEITDNPY-MTSIPVNAFQGLCNETLTLKL------YNNGFTSVQGYAFNG 178 (239)
T ss_dssp EEEEEEECCCS-C-CC-CTTCCBCCSEEEEEEESCTT-CCEECTTTTTTTBSSEEEEEC------CSCCCCEECTTTTTT
T ss_pred EEeCCCCCCcc-c-cc-cccccccccccEEECCCCcc-hhhcCcccccchhcceeEEEc------CCCCCcccCHhhcCC
Confidence 55555555542 3 22 44444444 5555555 3 3322222333 44454 4443 444444222222222
Q ss_pred CCCCcEEEccCCeeeecCCCceEEEeecceeeeeecccccccc-ccccEEEecCCeeeeccCCCccccccccEEeccccc
Q 040144 204 FRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANL-IEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCY 282 (289)
Q Consensus 204 ~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~-~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~ 282 (289)
++|+.|++++|+ .++ .++...+.++ ++|+.|++++|++++ +|.. .+++|+.|+++++.
T Consensus 179 -~~L~~L~L~~n~----------------~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 179 -TKLDAVYLNKNK----------------YLT-VIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp -CEEEEEECTTCT----------------TCC-EECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred -CCCCEEEcCCCC----------------Ccc-cCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 444444444442 244 4554477888 999999999999985 4443 56778888888763
No 90
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=1.8e-22 Score=180.13 Aligned_cols=209 Identities=12% Similarity=0.003 Sum_probs=119.7
Q ss_pred hhcCCCccEEEccCCccCCCCc-ccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccC-----------ceeee
Q 040144 73 ANKLLSLVELRLSNCQLQHFSP-LATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGF-----------NNFQG 140 (289)
Q Consensus 73 ~~~~~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-----------n~~~~ 140 (289)
+..+++|++|++++|.++.... ..+..+++|+.|++. +.+.+..++.....+++|++|++++ +.+++
T Consensus 289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~ 367 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ 367 (592)
T ss_dssp GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH
T ss_pred HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCH
Confidence 3445566666666665433211 123456666666665 3333233333344566666666662 23332
Q ss_pred eeChhhhcCCCCccEEeCCCCCcccCCCCcccc--ccCcceeeccccccccCCccccc-----ccccccCCCCCcEEEcc
Q 040144 141 TIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA--LCNLKSINLQESLDMRSSSIYGH-----LTDQLGQFRNLVTFNLV 213 (289)
Q Consensus 141 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~--~~~L~~L~l~~~l~l~~~~~~~~-----~~~~l~~~~~L~~L~l~ 213 (289)
.........+++|++|+++.+. +++..+..+. +++|+.|+++..- ..+.+++. ++..+..+++|+.|+++
T Consensus 368 ~~~~~l~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~~L~~L~l~~~~--~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~ 444 (592)
T 3ogk_B 368 RGLIALAQGCQELEYMAVYVSD-ITNESLESIGTYLKNLCDFRLVLLD--REERITDLPLDNGVRSLLIGCKKLRRFAFY 444 (592)
T ss_dssp HHHHHHHHHCTTCSEEEEEESC-CCHHHHHHHHHHCCSCCEEEEEECS--CCSCCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHhhCccCeEEEeecCC-ccHHHHHHHHhhCCCCcEEEEeecC--CCccccCchHHHHHHHHHHhCCCCCEEEEe
Confidence 1102223346667777765555 4443333443 5667766652100 14445542 33345678889999886
Q ss_pred CCe--eeec--------CCCceEEEeecceeeee-eccccccccccccEEEecCCeeeeccC-CCccccccccEEecccc
Q 040144 214 NNS--IVGF--------IPWSFELHIYDNKLNVT-LFELHFANLIEMSWFRVGGNQLTLEVK-HDWIPHFQLVALGLHSC 281 (289)
Q Consensus 214 ~n~--~~~~--------~~~~~~L~l~~n~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~L~~l~l~~n 281 (289)
.|. +++. .+....|++++|.+++. ++. .+.++++|++|++++|++++... ..+..+++|+.|++++|
T Consensus 445 ~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLME-FSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGY 523 (592)
T ss_dssp CCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHH-HHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESC
T ss_pred cCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHH-HHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCC
Confidence 543 4432 23333889999888753 333 56788999999999999875433 33457889999999999
Q ss_pred cCccC
Q 040144 282 YIGSR 286 (289)
Q Consensus 282 ~~~~~ 286 (289)
++++.
T Consensus 524 ~it~~ 528 (592)
T 3ogk_B 524 RASMT 528 (592)
T ss_dssp BCCTT
T ss_pred cCCHH
Confidence 98753
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=1.2e-19 Score=144.47 Aligned_cols=180 Identities=25% Similarity=0.249 Sum_probs=150.7
Q ss_pred CCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcE
Q 040144 26 SNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTM 105 (289)
Q Consensus 26 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~ 105 (289)
...++++++++....++.. + .+.+++|++++|.+..... ..+..+++|++|++++|.+....+..+..+++|+.
T Consensus 14 ~~~~~l~~~~~~l~~~p~~--~--~~~l~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 87 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSG--I--PADTEKLDLQSTGLATLSD--ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT 87 (251)
T ss_dssp GGGTEEECTTCCCSSCCSC--C--CTTCCEEECTTSCCCCCCT--TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCeEEecCCCCccccCCC--C--CCCCCEEEccCCCcCccCH--hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCE
Confidence 3567899998877766643 2 3689999999999888643 25788999999999999999988888899999999
Q ss_pred EeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccc
Q 040144 106 LDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQE 184 (289)
Q Consensus 106 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~ 184 (289)
|++++|.++ ...+..+..+++|++|++++|.+. .+++..+..+++|++|++++|. +.+..+..+. +++|+.|++
T Consensus 88 L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L-- 162 (251)
T 3m19_A 88 LGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSL-- 162 (251)
T ss_dssp EECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC--
T ss_pred EECCCCccc-ccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEEC--
Confidence 999999997 545566788999999999999998 4536678899999999999998 7755555677 899999886
Q ss_pred cccccCCcccccccccccCCCCCcEEEccCCeeeec
Q 040144 185 SLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGF 220 (289)
Q Consensus 185 ~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 220 (289)
++|.+.+..+..+..+++|+.|++++|.+...
T Consensus 163 ----~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 163 ----STNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ----CSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ----CCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 89999988888899999999999999998744
No 92
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=4.9e-22 Score=177.36 Aligned_cols=105 Identities=17% Similarity=0.173 Sum_probs=67.4
Q ss_pred ccCcceeeccccccccCCcccccccccccC-CCCCcEEEcc----CCeeeec------------CCCceEEEeecc--ee
Q 040144 174 LCNLKSINLQESLDMRSSSIYGHLTDQLGQ-FRNLVTFNLV----NNSIVGF------------IPWSFELHIYDN--KL 234 (289)
Q Consensus 174 ~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~-~~~L~~L~l~----~n~~~~~------------~~~~~~L~l~~n--~~ 234 (289)
+++|++|++ ..+.+++..+..++. +++|+.|+++ .|.+++. .+....|++++| .+
T Consensus 377 ~~~L~~L~l------~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l 450 (592)
T 3ogk_B 377 CQELEYMAV------YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGL 450 (592)
T ss_dssp CTTCSEEEE------EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGC
T ss_pred CccCeEEEe------ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCc
Confidence 555665554 555565555445544 7788888885 4555542 222227777643 35
Q ss_pred eeeecccccc-ccccccEEEecCCeeeecc-CCCccccccccEEecccccCcc
Q 040144 235 NVTLFELHFA-NLIEMSWFRVGGNQLTLEV-KHDWIPHFQLVALGLHSCYIGS 285 (289)
Q Consensus 235 ~~~~~~~~~~-~~~~L~~l~l~~n~~~~~~-~~~~~~~~~L~~l~l~~n~~~~ 285 (289)
++.... .+. .+++|++|++++|++++.. +..+..+++|+.|++++|.+++
T Consensus 451 ~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 451 TDLGLS-YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp CHHHHH-HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred cHHHHH-HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH
Confidence 544444 333 4788999999999987633 3345678999999999998764
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=3.5e-19 Score=148.75 Aligned_cols=236 Identities=18% Similarity=0.147 Sum_probs=161.2
Q ss_pred cEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE-EE
Q 040144 5 RYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE-LR 83 (289)
Q Consensus 5 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~-L~ 83 (289)
++++.++++++ .+|..+ .+++++|++++|.+..++... +.++++|++|++++|.+....+ ...+.+++++++ +.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~-f~~l~~L~~L~Ls~N~i~~~i~-~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGA-FSGFGDLEKIEISQNDVLEVIE-ADVFSNLPKLHEIRI 86 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTS-STTCTTCCEEEEECCTTCCEEC-TTSBCSCTTCCEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHH-HcCCCCCCEEECcCCCCCCccC-hhHhhcchhhhhhhc
Confidence 45677777777 466555 358999999999887776544 7889999999999998755421 125677877775 55
Q ss_pred ccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCc-eeeeeeChhhhcCCC-CccEEeCCCC
Q 040144 84 LSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFN-NFQGTIDLEALGNLT-SINRLDLSLN 161 (289)
Q Consensus 84 l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~-~L~~L~l~~n 161 (289)
+..|.+..+.+..+..+++|++|++++|.++ ...+..+....++..+++.++ .+. .+++..|..+. .++.|++++|
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKN 164 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSS
T ss_pred ccCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhccccc
Confidence 6678888887888899999999999999886 333333344556778888664 444 55355666654 6889999999
Q ss_pred CcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCce----EEEeecceeee
Q 040144 162 TGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF----ELHIYDNKLNV 236 (289)
Q Consensus 162 ~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~----~L~l~~n~~~~ 236 (289)
. +. .++.... ..+|+++.+ ...|.++...+.+|+.+++|+.|++++|+++...+..+ .|.+.++.-..
T Consensus 165 ~-i~-~i~~~~f~~~~L~~l~l-----~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~l~ 237 (350)
T 4ay9_X 165 G-IQ-EIHNSAFNGTQLDELNL-----SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 237 (350)
T ss_dssp C-CC-EECTTSSTTEEEEEEEC-----TTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTTCC
T ss_pred c-cc-CCChhhccccchhHHhh-----ccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCCCcC
Confidence 8 65 4555444 667777776 13466666666678999999999999999883322222 45444432222
Q ss_pred eeccccccccccccEEEecC
Q 040144 237 TLFELHFANLIEMSWFRVGG 256 (289)
Q Consensus 237 ~~~~~~~~~~~~L~~l~l~~ 256 (289)
.+|. +.++++|+.+++.+
T Consensus 238 ~lP~--l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 238 KLPT--LEKLVALMEASLTY 255 (350)
T ss_dssp CCCC--TTTCCSCCEEECSC
T ss_pred cCCC--chhCcChhhCcCCC
Confidence 4553 55666666666654
No 94
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=3.1e-21 Score=172.24 Aligned_cols=176 Identities=11% Similarity=-0.002 Sum_probs=104.9
Q ss_pred CCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCC------------------
Q 040144 99 NFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSL------------------ 160 (289)
Q Consensus 99 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~------------------ 160 (289)
.+++|+.|++++|.+++......+..+++|++|++.+| +...........+++|++|++.+
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 45788888888887763333444556778888888776 33111022223456666666622
Q ss_pred ----------------CCcccCCCCcccc--ccCcceeecccccccc--C----Ccccc-----cccccccCCCCCcEEE
Q 040144 161 ----------------NTGLTGRIPRSMA--LCNLKSINLQESLDMR--S----SSIYG-----HLTDQLGQFRNLVTFN 211 (289)
Q Consensus 161 ----------------n~~~~~~~~~~~~--~~~L~~L~l~~~l~l~--~----~~~~~-----~~~~~l~~~~~L~~L~ 211 (289)
+. +++.....+. +++|+.|++ + + +.++. .++..+..+++|+.|+
T Consensus 366 ~l~~~~~~L~~L~~~~~~-l~~~~~~~l~~~~~~L~~L~L------~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~ 438 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQ-MTNAALITIARNRPNMTRFRL------CIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLS 438 (594)
T ss_dssp HHHHHCTTCCEEEEEESC-CCHHHHHHHHHHCTTCCEEEE------EESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEE
T ss_pred HHHHhchhHHHHHHhcCC-cCHHHHHHHHhhCCCcceeEe------ecccCCCcccccCCchhhHHHHHHhhCCCccEEe
Confidence 22 1111111121 445555544 3 1 23331 1222356678888888
Q ss_pred ccCCeeeec--------CCCceEEEeecceeeeeeccccc-cccccccEEEecCCeeeeccCC-CccccccccEEecccc
Q 040144 212 LVNNSIVGF--------IPWSFELHIYDNKLNVTLFELHF-ANLIEMSWFRVGGNQLTLEVKH-DWIPHFQLVALGLHSC 281 (289)
Q Consensus 212 l~~n~~~~~--------~~~~~~L~l~~n~~~~~~~~~~~-~~~~~L~~l~l~~n~~~~~~~~-~~~~~~~L~~l~l~~n 281 (289)
+++ .+++. .+....|++++|.+++.... .+ .++++|++|++++|++++.... .+..+++|+.|++++|
T Consensus 439 L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~-~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 439 LSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH-HVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516 (594)
T ss_dssp CCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH-HHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESS
T ss_pred ecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHH-HHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCC
Confidence 866 44432 23333899999988754444 34 6789999999999998654443 3456889999999999
Q ss_pred cCc
Q 040144 282 YIG 284 (289)
Q Consensus 282 ~~~ 284 (289)
+++
T Consensus 517 ~~~ 519 (594)
T 2p1m_B 517 SVS 519 (594)
T ss_dssp CCB
T ss_pred CCC
Confidence 875
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=9.1e-19 Score=135.43 Aligned_cols=159 Identities=21% Similarity=0.183 Sum_probs=88.8
Q ss_pred CCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEE
Q 040144 77 LSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRL 156 (289)
Q Consensus 77 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 156 (289)
+++++|++++|.+....+..+..+++|++|++++|.++ ...+..+..+++|++|++++|.+. .+++..+..+++|++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKEL 105 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEE
Confidence 35556666666555554444555666666666666554 222333455566666666666665 3324445566666666
Q ss_pred eCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCceEEEeecceee
Q 040144 157 DLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLN 235 (289)
Q Consensus 157 ~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~ 235 (289)
++++|. +....+..+. +++|+.|++ ++|.+++..+..+..+++|+.|++++|.+.+..|....|+++.|.++
T Consensus 106 ~L~~N~-l~~~~~~~~~~l~~L~~L~l------~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 106 ALNTNQ-LQSLPDGVFDKLTQLKDLRL------YQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHS 178 (208)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEEC------CSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTTTHHHHHHHHHCT
T ss_pred EcCCCc-CcccCHhHhccCCcCCEEEC------CCCccceeCHHHhccCCCccEEEecCCCeecCCCCHHHHHHHHHhCC
Confidence 666666 4433333444 666666654 56666655555567777777777777766544443334444444444
Q ss_pred eeeccccccc
Q 040144 236 VTLFELHFAN 245 (289)
Q Consensus 236 ~~~~~~~~~~ 245 (289)
|.+|. +++.
T Consensus 179 g~ip~-~~~~ 187 (208)
T 2o6s_A 179 GVVRN-SAGS 187 (208)
T ss_dssp TTBBC-TTSS
T ss_pred ceeec-cCcc
Confidence 44554 4443
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=1.7e-18 Score=133.89 Aligned_cols=174 Identities=18% Similarity=0.142 Sum_probs=133.2
Q ss_pred ccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeC
Q 040144 79 LVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDL 158 (289)
Q Consensus 79 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 158 (289)
.+.++..++.++.... ...+++++|++++|.++ ...+..+..+++|++|++++|.+. .+++..+..+++|++|++
T Consensus 9 ~~~v~c~~~~l~~~p~---~~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPT---GIPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp TTEEECCSSCCSSCCS---CCCTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCccCCCC---CCCCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEEC
Confidence 4566777777666532 23468999999999987 444555678899999999999988 453667889999999999
Q ss_pred CCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCceEEEeecceeeee
Q 040144 159 SLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVT 237 (289)
Q Consensus 159 ~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~ 237 (289)
++|. +....+..+. +++|+.|++ ++|.+++..+..+..+++|+.|++++|.+++
T Consensus 84 s~n~-l~~~~~~~~~~l~~L~~L~L------~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~------------------ 138 (208)
T 2o6s_A 84 STNQ-LQSLPNGVFDKLTQLKELAL------NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS------------------ 138 (208)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEEC------CSSCCCCCCTTTTTTCTTCCEEECCSSCCSC------------------
T ss_pred CCCc-CCccCHhHhcCccCCCEEEc------CCCcCcccCHhHhccCCcCCEEECCCCccce------------------
Confidence 9998 7655555566 889998886 8899988777778899999999999988872
Q ss_pred eccccccccccccEEEecCCeeeeccCCCccccccccEEecccccCccCCCC
Q 040144 238 LFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIGSRFPL 289 (289)
Q Consensus 238 ~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~ 289 (289)
++...+..+++|++|++++|++.+ .+++|+.|+++.|++++.+|+
T Consensus 139 ~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 139 VPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBC
T ss_pred eCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeec
Confidence 333256677888888888886653 355677778888888777763
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=3.1e-18 Score=139.21 Aligned_cols=170 Identities=22% Similarity=0.289 Sum_probs=98.7
Q ss_pred CCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCC
Q 040144 23 GNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSS 102 (289)
Q Consensus 23 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 102 (289)
..+++|++|++++|.+...+. +..+++|++|++++|.+...+. +..+++|++|++++|.+... ..+..+++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~---~~~l~~L~~L~L~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~--~~l~~l~~ 113 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIKP----LANLKNLGWLFLDENKVKDL--SSLKDLKK 113 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT---GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCG--GGGTTCTT
T ss_pred hhcCcccEEEccCCCcccChh---HhcCCCCCEEEccCCccCCCcc----cccCCCCCEEECCCCcCCCC--hhhccCCC
Confidence 345666666666665544432 4556666666666666655432 45666666666666666553 23566666
Q ss_pred CcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceee
Q 040144 103 LTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSIN 181 (289)
Q Consensus 103 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~ 181 (289)
|+.|++++|.++ . + ..+..+++|++|++++|.+.+ + ..++.+++|+.|++++|. +.+..+ +. +++|+.|+
T Consensus 114 L~~L~L~~n~i~-~-~-~~l~~l~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~ 184 (291)
T 1h6t_A 114 LKSLSLEHNGIS-D-I-NGLVHLPQLESLYLGNNKITD-I--TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLY 184 (291)
T ss_dssp CCEEECTTSCCC-C-C-GGGGGCTTCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEE
T ss_pred CCEEECCCCcCC-C-C-hhhcCCCCCCEEEccCCcCCc-c--hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEE
Confidence 666666666665 1 2 235556666666666666652 2 345566666666666666 443222 44 66666665
Q ss_pred ccccccccCCcccccccccccCCCCCcEEEccCCeee
Q 040144 182 LQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIV 218 (289)
Q Consensus 182 l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 218 (289)
+ ++|.+++. + .+..+++|+.|++++|.+.
T Consensus 185 L------~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 185 L------SKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp C------CSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred C------CCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 4 55655542 2 2556666666666666555
No 98
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=5.2e-20 Score=164.30 Aligned_cols=165 Identities=15% Similarity=0.061 Sum_probs=96.3
Q ss_pred hhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccc------------
Q 040144 118 ILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQE------------ 184 (289)
Q Consensus 118 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~------------ 184 (289)
++..+..+++|++|++++|.+.+......+..+++|++|++++|. ....++.... +++|++|++..
T Consensus 281 l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~-~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l 359 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI-EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL 359 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGG-HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred HHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCcc-CHHHHHHHHHhCCCCCEEEEecCcccccccCCCC
Confidence 333444678999999999997643213346688999999999873 2222222233 78888887611
Q ss_pred ----------------cccccCCccccccccccc-CCCCCcEEEcc--C----Ceeeec------------CCCceEEEe
Q 040144 185 ----------------SLDMRSSSIYGHLTDQLG-QFRNLVTFNLV--N----NSIVGF------------IPWSFELHI 229 (289)
Q Consensus 185 ----------------~l~l~~~~~~~~~~~~l~-~~~~L~~L~l~--~----n~~~~~------------~~~~~~L~l 229 (289)
.+.+..+.+++.....+. .+++|+.|+++ + +.+++. .+....|++
T Consensus 360 ~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L 439 (594)
T 2p1m_B 360 TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL 439 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC
T ss_pred CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee
Confidence 111222333322222222 35666666666 2 233310 111225666
Q ss_pred ecceeeeeeccccccc-cccccEEEecCCeeeeccCCCc-cccccccEEecccccCcc
Q 040144 230 YDNKLNVTLFELHFAN-LIEMSWFRVGGNQLTLEVKHDW-IPHFQLVALGLHSCYIGS 285 (289)
Q Consensus 230 ~~n~~~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~-~~~~~L~~l~l~~n~~~~ 285 (289)
++ .++..... .++. +++|++|++++|.+++..+..+ ..+++|+.|++++|.+++
T Consensus 440 ~~-~l~~~~~~-~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 440 SG-LLTDKVFE-YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp CS-SCCHHHHH-HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred cC-cccHHHHH-HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 55 44433333 3443 7788888888888876555444 567889999999998753
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.3e-18 Score=140.00 Aligned_cols=173 Identities=20% Similarity=0.241 Sum_probs=132.0
Q ss_pred cCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCC
Q 040144 47 LSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALS 126 (289)
Q Consensus 47 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 126 (289)
...+++|++|++++|.+...+ .+..+++|++|++++|.+....+ +..+++|+.|++++|.++ ..+ .+..++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~----~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~--~~~-~l~~l~ 112 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK--DLS-SLKDLK 112 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC--CGG-GGTTCT
T ss_pred hhhcCcccEEEccCCCcccCh----hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC--CCh-hhccCC
Confidence 345778888888888776653 46678888888888888877644 778888888888888886 233 477788
Q ss_pred CCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCC
Q 040144 127 HLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFR 205 (289)
Q Consensus 127 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~ 205 (289)
+|++|++++|.+.+ + ..+..+++|+.|++++|. +.+. ..+. +++|+.|++ ++|.+.+..+ +..++
T Consensus 113 ~L~~L~L~~n~i~~-~--~~l~~l~~L~~L~l~~n~-l~~~--~~l~~l~~L~~L~L------~~N~l~~~~~--l~~l~ 178 (291)
T 1h6t_A 113 KLKSLSLEHNGISD-I--NGLVHLPQLESLYLGNNK-ITDI--TVLSRLTKLDTLSL------EDNQISDIVP--LAGLT 178 (291)
T ss_dssp TCCEEECTTSCCCC-C--GGGGGCTTCCEEECCSSC-CCCC--GGGGGCTTCSEEEC------CSSCCCCCGG--GTTCT
T ss_pred CCCEEECCCCcCCC-C--hhhcCCCCCCEEEccCCc-CCcc--hhhccCCCCCEEEc------cCCccccchh--hcCCC
Confidence 88888888888873 3 457788888888888887 5533 4555 788888776 7788876554 77888
Q ss_pred CCcEEEccCCeeeecCCCceEEEeecceeeeeeccccccccccccEEEecCCeeeec
Q 040144 206 NLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLE 262 (289)
Q Consensus 206 ~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 262 (289)
+|+.|++++|.++ .++ .+..+++|+.|++++|++.+.
T Consensus 179 ~L~~L~L~~N~i~------------------~l~--~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 179 KLQNLYLSKNHIS------------------DLR--ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp TCCEEECCSSCCC------------------BCG--GGTTCTTCSEEEEEEEEEECC
T ss_pred ccCEEECCCCcCC------------------CCh--hhccCCCCCEEECcCCcccCC
Confidence 8888888888776 333 377889999999999998864
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=4.4e-18 Score=151.10 Aligned_cols=173 Identities=22% Similarity=0.278 Sum_probs=131.7
Q ss_pred cCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCC
Q 040144 22 LGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFS 101 (289)
Q Consensus 22 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 101 (289)
+..+++|++|++++|.+...+. +..+++|+.|++++|.+...++ +..+++|+.|++++|.+... ..+..++
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~---l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~l~~l--~~l~~l~ 109 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDENKIKDL--SSLKDLK 109 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTT---GGGCTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCCC--TTSTTCT
T ss_pred hhcCCCCCEEECcCCCCCCChH---HccCCCCCEEEeeCCCCCCChh----hccCCCCCEEECcCCCCCCC--hhhccCC
Confidence 4567788888888887666542 6778888889988888777542 67888888888888888764 3577888
Q ss_pred CCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCccee
Q 040144 102 SLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSI 180 (289)
Q Consensus 102 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L 180 (289)
+|+.|++++|.+. . + ..+..+++|+.|++++|.+.+ + ..++.+++|+.|++++|. +.+..| +. +++|+.|
T Consensus 110 ~L~~L~Ls~N~l~-~-l-~~l~~l~~L~~L~Ls~N~l~~-l--~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L 180 (605)
T 1m9s_A 110 KLKSLSLEHNGIS-D-I-NGLVHLPQLESLYLGNNKITD-I--TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNL 180 (605)
T ss_dssp TCCEEECTTSCCC-C-C-GGGGGCTTCSEEECCSSCCCC-C--GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEE
T ss_pred CCCEEEecCCCCC-C-C-ccccCCCccCEEECCCCccCC-c--hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEE
Confidence 8888888888886 2 2 346778888888888888873 3 467788888888888888 665444 56 8888888
Q ss_pred eccccccccCCcccccccccccCCCCCcEEEccCCeeeec
Q 040144 181 NLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGF 220 (289)
Q Consensus 181 ~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 220 (289)
++ ++|.+.+. ..+..+++|+.|++++|.+.+.
T Consensus 181 ~L------s~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 181 YL------SKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp EC------CSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred EC------cCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 76 77877754 3577888888888888887743
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=8.2e-18 Score=140.43 Aligned_cols=231 Identities=13% Similarity=0.045 Sum_probs=116.8
Q ss_pred cEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCC-CCcccccCCCCCcE-E
Q 040144 29 QFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQH-FSPLATVNFSSLTM-L 106 (289)
Q Consensus 29 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~L~~-L 106 (289)
++++.+++....++.. + .+.+++|++++|.+...+. ..+.++++|++|++++|.+.. +.+..|.+++++.. +
T Consensus 12 ~~v~C~~~~Lt~iP~~--l--~~~l~~L~Ls~N~i~~i~~--~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSD--L--PRNAIELRFVLTKLRVIQK--GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp TEEEEESTTCCSCCTT--C--CTTCSEEEEESCCCSEECT--TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred CEEEecCCCCCccCcC--c--CCCCCEEEccCCcCCCcCH--HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 3455555444444321 1 3456777777777666532 145667777777777776544 33345566666554 4
Q ss_pred eccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-c-cCcceeeccc
Q 040144 107 DLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-L-CNLKSINLQE 184 (289)
Q Consensus 107 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~-~~L~~L~l~~ 184 (289)
.+..|.++ ...+..+..+++|++|++++|.+. .+++..+....++..+++.++..+....+..+. + ..++.|++
T Consensus 86 ~~~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L-- 161 (350)
T 4ay9_X 86 IEKANNLL-YINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL-- 161 (350)
T ss_dssp EEEETTCC-EECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC--
T ss_pred cccCCccc-ccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcc--
Confidence 44556665 333445566677777777777665 232334445555666666543312221222233 2 34555554
Q ss_pred cccccCCcccccccccccCCCCCcEEEccC-CeeeecCCCce--------EEEeecceeeeeeccccccccccccEEEec
Q 040144 185 SLDMRSSSIYGHLTDQLGQFRNLVTFNLVN-NSIVGFIPWSF--------ELHIYDNKLNVTLFELHFANLIEMSWFRVG 255 (289)
Q Consensus 185 ~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~-n~~~~~~~~~~--------~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~ 255 (289)
++|.++...+.++ ...+|+.+++.+ |.++ .+|... .|++++|+++ .+|.. .+.+|+.|.+.
T Consensus 162 ----~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~---~~~~L~~L~~l 231 (350)
T 4ay9_X 162 ----NKNGIQEIHNSAF-NGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSY---GLENLKKLRAR 231 (350)
T ss_dssp ----CSSCCCEECTTSS-TTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCSS---SCTTCCEEECT
T ss_pred ----ccccccCCChhhc-cccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccChh---hhccchHhhhc
Confidence 6666664333333 345566666654 3333 333211 5566666555 34441 23344444443
Q ss_pred CCeeeeccCCCccccccccEEeccc
Q 040144 256 GNQLTLEVKHDWIPHFQLVALGLHS 280 (289)
Q Consensus 256 ~n~~~~~~~~~~~~~~~L~~l~l~~ 280 (289)
++.-.+.+| .+..+++|+.+++++
T Consensus 232 ~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 232 STYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp TCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred cCCCcCcCC-CchhCcChhhCcCCC
Confidence 332222333 245555566655544
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=4e-17 Score=144.94 Aligned_cols=169 Identities=22% Similarity=0.249 Sum_probs=108.0
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
++|+.|++.+|.+.. ++ .+..+++|++|++++|.+...+. +..+++|+.|++++|.+...+ .+..+++|++
T Consensus 43 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~----~l~~l~~L~~ 113 (605)
T 1m9s_A 43 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKDLS----SLKDLKKLKS 113 (605)
T ss_dssp TTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCT----TSTTCTTCCE
T ss_pred CCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCCCCh----hhccCCCCCE
Confidence 466677777777653 33 46677777777777766555443 556777777777777666533 4566677777
Q ss_pred EEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCC
Q 040144 82 LRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLN 161 (289)
Q Consensus 82 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 161 (289)
|++++|.+... ..+..+++|+.|++++|.++ . + ..+..+++|+.|++++|.+.+.. + +..+++|+.|++++|
T Consensus 114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~-~-l-~~l~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKIT-D-I-TVLSRLTKLDTLSLEDNQISDIV-P--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp EECTTSCCCCC--GGGGGCTTCSEEECCSSCCC-C-C-GGGGSCTTCSEEECCSSCCCCCG-G--GTTCTTCCEEECCSS
T ss_pred EEecCCCCCCC--ccccCCCccCEEECCCCccC-C-c-hhhcccCCCCEEECcCCcCCCch-h--hccCCCCCEEECcCC
Confidence 77777776654 34666777777777777775 2 2 34566777777777777766322 2 667777777777777
Q ss_pred CcccCCCCcccc-ccCcceeeccccccccCCccccc
Q 040144 162 TGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGH 196 (289)
Q Consensus 162 ~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~ 196 (289)
. +.+ ++ .+. +++|+.|++ ++|.+...
T Consensus 186 ~-i~~-l~-~l~~l~~L~~L~L------~~N~l~~~ 212 (605)
T 1m9s_A 186 H-ISD-LR-ALAGLKNLDVLEL------FSQECLNK 212 (605)
T ss_dssp C-CCB-CG-GGTTCTTCSEEEC------CSEEEECC
T ss_pred C-CCC-Ch-HHccCCCCCEEEc------cCCcCcCC
Confidence 6 543 22 344 666776665 66666543
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.74 E-value=1.4e-17 Score=146.38 Aligned_cols=183 Identities=19% Similarity=0.235 Sum_probs=95.7
Q ss_pred cccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEE
Q 040144 52 LLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFL 131 (289)
Q Consensus 52 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 131 (289)
+++.|+++++.+...+. .+ .++|++|++++|.++.+. ..+++|+.|++++|.++ . ++. +.. +|++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~---~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~-~-ip~-l~~--~L~~L 125 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPD---NL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLS-T-LPE-LPA--SLKHL 125 (571)
T ss_dssp TCSEEECCSSCCSCCCS---CC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-C-CCC-CCT--TCCEE
T ss_pred CccEEEeCCCCCCccCH---hH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCC-C-cch-hhc--CCCEE
Confidence 55555555555544332 11 245556666665555332 23455566666665554 2 333 222 56666
Q ss_pred EccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCccccccCcceeeccccccccCCcccccccccccCCCCCcEEE
Q 040144 132 DLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMALCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFN 211 (289)
Q Consensus 132 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~ 211 (289)
++++|.+++ + |. .+++|+.|++++|. +.+ +|. .+++|+.|++ ++|.+++ +|. +. ++|+.|+
T Consensus 126 ~Ls~N~l~~-l-p~---~l~~L~~L~Ls~N~-l~~-lp~--~l~~L~~L~L------s~N~L~~-lp~-l~--~~L~~L~ 186 (571)
T 3cvr_A 126 DVDNNQLTM-L-PE---LPALLEYINADNNQ-LTM-LPE--LPTSLEVLSV------RNNQLTF-LPE-LP--ESLEALD 186 (571)
T ss_dssp ECCSSCCSC-C-CC---CCTTCCEEECCSSC-CSC-CCC--CCTTCCEEEC------CSSCCSC-CCC-CC--TTCCEEE
T ss_pred ECCCCcCCC-C-CC---cCccccEEeCCCCc-cCc-CCC--cCCCcCEEEC------CCCCCCC-cch-hh--CCCCEEE
Confidence 666665553 3 22 34556666666555 432 333 1345555544 5555554 333 33 5566666
Q ss_pred ccCCeeeecCCC----c-------eEEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCcccc
Q 040144 212 LVNNSIVGFIPW----S-------FELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPH 270 (289)
Q Consensus 212 l~~n~~~~~~~~----~-------~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 270 (289)
+++|.++ .+|. . ..|++++|.++ .+|. .+..+++|+.|++++|++++..|..+..+
T Consensus 187 Ls~N~L~-~lp~~~~~L~~~~~~L~~L~Ls~N~l~-~lp~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 187 VSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPE-NILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCSSCCS-SCCCCC--------CCEEEECCSSCCC-CCCG-GGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred CcCCCCC-chhhHHHhhhcccccceEEecCCCcce-ecCH-HHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 6666555 2221 1 13455555555 5666 56667777777777777777666655554
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1.1e-17 Score=128.15 Aligned_cols=152 Identities=14% Similarity=0.171 Sum_probs=91.7
Q ss_pred CCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCc
Q 040144 99 NFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNL 177 (289)
Q Consensus 99 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L 177 (289)
.+++++.|++++|.++ .++ .+..+++|++|++++|.+. . ...+..+++|++|++++|. +.+..+..+. +++|
T Consensus 42 ~l~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~l~~n~~~-~--~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 42 QMNSLTYITLANINVT--DLT-GIEYAHNIKDLTINNIHAT-N--YNPISGLSNLERLRIMGKD-VTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHTCCEEEEESSCCS--CCT-TGGGCTTCSEEEEESCCCS-C--CGGGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTC
T ss_pred hcCCccEEeccCCCcc--ChH-HHhcCCCCCEEEccCCCCC-c--chhhhcCCCCCEEEeECCc-cCcccChhhcCCCCC
Confidence 3445555555555553 222 3445556666666665443 1 2345556666666666665 4444455555 6666
Q ss_pred ceeeccccccccCCcccccccccccCCCCCcEEEccCCe-eeecCCCceEEEeecceeeeeeccccccccccccEEEecC
Q 040144 178 KSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNS-IVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGG 256 (289)
Q Consensus 178 ~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~ 256 (289)
+.|++ ++|.+++..+..++.+++|+.|++++|. ++ .++ .+.++++|+.|++++
T Consensus 115 ~~L~L------s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~------------------~~~--~l~~l~~L~~L~l~~ 168 (197)
T 4ezg_A 115 TLLDI------SHSAHDDSILTKINTLPKVNSIDLSYNGAIT------------------DIM--PLKTLPELKSLNIQF 168 (197)
T ss_dssp CEEEC------CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC------------------CCG--GGGGCSSCCEEECTT
T ss_pred CEEEe------cCCccCcHhHHHHhhCCCCCEEEccCCCCcc------------------ccH--hhcCCCCCCEEECCC
Confidence 66654 5666665566667777788888887776 44 333 366778888888888
Q ss_pred CeeeeccCCCccccccccEEecccccCcc
Q 040144 257 NQLTLEVKHDWIPHFQLVALGLHSCYIGS 285 (289)
Q Consensus 257 n~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 285 (289)
|++++ ++ .+..+++|+.|++++|+|.+
T Consensus 169 n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 169 DGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp BCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 88875 33 67777888888888887753
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=2.7e-17 Score=128.13 Aligned_cols=154 Identities=20% Similarity=0.201 Sum_probs=115.0
Q ss_pred ccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchh-hHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEe
Q 040144 79 LVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFIL-SWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLD 157 (289)
Q Consensus 79 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 157 (289)
.++++++++.++.++ ..+ ...++.|++++|.++ ...+ ..+..+++|++|++++|.+++ +++..|..+++|++|+
T Consensus 13 ~~~l~~s~n~l~~iP-~~~--~~~~~~L~L~~N~l~-~~~~~~~~~~l~~L~~L~L~~N~i~~-i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 13 GTTVDCSNQKLNKIP-EHI--PQYTAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNEIL 87 (220)
T ss_dssp TTEEECCSSCCSSCC-SCC--CTTCSEEECCSSCCC-EECCCCCGGGCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEE
T ss_pred CCEeEeCCCCcccCc-cCC--CCCCCEEEcCCCcCC-ccCchhhhccCCCCCEEECCCCcCCE-ECHHHhCCCCCCCEEE
Confidence 457888888887753 222 345688999988886 3322 346778889999999988874 4366788888899999
Q ss_pred CCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCceEEEeecceeee
Q 040144 158 LSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNV 236 (289)
Q Consensus 158 l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~ 236 (289)
+++|. +....+..+. +++|++|++ ++|.+.+..|..+..+++|+.|++++|.+++.
T Consensus 88 Ls~N~-l~~~~~~~~~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------- 144 (220)
T 2v70_A 88 LTSNR-LENVQHKMFKGLESLKTLML------RSNRITCVGNDSFIGLSSVRLLSLYDNQITTV---------------- 144 (220)
T ss_dssp CCSSC-CCCCCGGGGTTCSSCCEEEC------TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB----------------
T ss_pred CCCCc-cCccCHhHhcCCcCCCEEEC------CCCcCCeECHhHcCCCccCCEEECCCCcCCEE----------------
Confidence 98888 6655555666 888888776 78888877788888888888888888877722
Q ss_pred eeccccccccccccEEEecCCeeeec
Q 040144 237 TLFELHFANLIEMSWFRVGGNQLTLE 262 (289)
Q Consensus 237 ~~~~~~~~~~~~L~~l~l~~n~~~~~ 262 (289)
.+. .+..+++|+.|++++|++...
T Consensus 145 -~~~-~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 145 -APG-AFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp -CTT-TTTTCTTCCEEECCSCCEECS
T ss_pred -CHH-HhcCCCCCCEEEecCcCCcCC
Confidence 233 677888888888888888754
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=5.8e-17 Score=142.56 Aligned_cols=182 Identities=21% Similarity=0.259 Sum_probs=142.2
Q ss_pred CCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEE
Q 040144 3 NLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVEL 82 (289)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 82 (289)
+++.|++++|.+++ +|..+ .++|++|++++|.+..++ ..+++|++|++++|.+...+. +.. +|++|
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~ip-----~~l~~L~~L~Ls~N~l~~ip~----l~~--~L~~L 125 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISLP-----ELPASLEYLDACDNRLSTLPE----LPA--SLKHL 125 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSCCCC----CCT--TCCEE
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcccc-----cccCCCCEEEccCCCCCCcch----hhc--CCCEE
Confidence 78999999999986 66655 378999999999877555 247899999999998887543 222 89999
Q ss_pred EccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCC
Q 040144 83 RLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNT 162 (289)
Q Consensus 83 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 162 (289)
++++|.++.+.. .+++|+.|++++|.++ .++. .+++|++|++++|.+++ + |. +. ++|+.|++++|.
T Consensus 126 ~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~--~lp~---~l~~L~~L~Ls~N~L~~-l-p~-l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 126 DVDNNQLTMLPE----LPALLEYINADNNQLT--MLPE---LPTSLEVLSVRNNQLTF-L-PE-LP--ESLEALDVSTNL 191 (571)
T ss_dssp ECCSSCCSCCCC----CCTTCCEEECCSSCCS--CCCC---CCTTCCEEECCSSCCSC-C-CC-CC--TTCCEEECCSSC
T ss_pred ECCCCcCCCCCC----cCccccEEeCCCCccC--cCCC---cCCCcCEEECCCCCCCC-c-ch-hh--CCCCEEECcCCC
Confidence 999999988533 6789999999999986 3554 57899999999999884 6 55 55 889999999998
Q ss_pred cccCCCCccccccCc-------ceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCC
Q 040144 163 GLTGRIPRSMALCNL-------KSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPW 223 (289)
Q Consensus 163 ~~~~~~~~~~~~~~L-------~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 223 (289)
++ .+|. +. .+| +.|++ ++|.++ .+|..+..+++|+.|++++|.+++.+|.
T Consensus 192 -L~-~lp~-~~-~~L~~~~~~L~~L~L------s~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 192 -LE-SLPA-VP-VRNHHSEETEIFFRC------RENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp -CS-SCCC-CC---------CCEEEEC------CSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred -CC-chhh-HH-HhhhcccccceEEec------CCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 66 5665 33 245 76665 889888 4666777799999999999998865544
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=7.2e-17 Score=125.75 Aligned_cols=151 Identities=21% Similarity=0.219 Sum_probs=106.2
Q ss_pred cEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEc
Q 040144 54 EHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDL 133 (289)
Q Consensus 54 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 133 (289)
+.++++++.+...+. .+ .+.+++|++++|.+....+..+..+++|+.|++++|.++ ...+..+..+++|++|++
T Consensus 14 ~~v~c~~~~l~~iP~---~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~L 87 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT---NL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVL 87 (220)
T ss_dssp TEEECTTSCCSSCCS---SC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEEC
T ss_pred CEEEcCCCCcCcCCC---cc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEEC
Confidence 445555555555432 11 146777777777777666666777777777777777776 444566777777888888
Q ss_pred cCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEc
Q 040144 134 GFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNL 212 (289)
Q Consensus 134 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l 212 (289)
++|.+. .+++..|..+++|++|++++|. +....|..+. +++|+.|++ ++|.+++..+..+..+++|+.|++
T Consensus 88 s~N~l~-~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L------~~N~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 88 YGNKIT-ELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSL------YDNKLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC------CSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCcCC-ccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEEC------CCCcCCEECHHHHhCCCCCCEEEe
Confidence 877776 4535556777788888888877 6655566666 777777775 777777777777888888899998
Q ss_pred cCCeee
Q 040144 213 VNNSIV 218 (289)
Q Consensus 213 ~~n~~~ 218 (289)
++|.+.
T Consensus 160 ~~N~~~ 165 (220)
T 2v9t_B 160 AQNPFI 165 (220)
T ss_dssp CSSCEE
T ss_pred CCCCcC
Confidence 888876
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=4.2e-17 Score=124.91 Aligned_cols=154 Identities=20% Similarity=0.284 Sum_probs=106.2
Q ss_pred CCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCC
Q 040144 48 SGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSH 127 (289)
Q Consensus 48 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 127 (289)
..+++|++|+++++.+...+ .+..+++|++|++++|.+... ..+..+++|+.|++++|.++ ...+..++.+++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~ 113 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT----GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVT-SDKIPNLSGLTS 113 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT----TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCB-GGGSCCCTTCTT
T ss_pred hhcCCccEEeccCCCccChH----HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccC-cccChhhcCCCC
Confidence 45667777888777766433 456677788888887765543 35667778888888887776 334555667778
Q ss_pred CCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCC
Q 040144 128 LPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRN 206 (289)
Q Consensus 128 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~ 206 (289)
|++|++++|.+.+.. +..++.+++|++|++++|. ....+| .+. +++|+.|++ ++|.+++.. .+..+++
T Consensus 114 L~~L~Ls~n~i~~~~-~~~l~~l~~L~~L~L~~n~-~i~~~~-~l~~l~~L~~L~l------~~n~i~~~~--~l~~l~~ 182 (197)
T 4ezg_A 114 LTLLDISHSAHDDSI-LTKINTLPKVNSIDLSYNG-AITDIM-PLKTLPELKSLNI------QFDGVHDYR--GIEDFPK 182 (197)
T ss_dssp CCEEECCSSBCBGGG-HHHHTTCSSCCEEECCSCT-BCCCCG-GGGGCSSCCEEEC------TTBCCCCCT--TGGGCSS
T ss_pred CCEEEecCCccCcHh-HHHHhhCCCCCEEEccCCC-CccccH-hhcCCCCCCEEEC------CCCCCcChH--HhccCCC
Confidence 888888888777544 6677778888888888876 344454 455 777777775 677776533 5778889
Q ss_pred CcEEEccCCeeee
Q 040144 207 LVTFNLVNNSIVG 219 (289)
Q Consensus 207 L~~L~l~~n~~~~ 219 (289)
|+.|++++|++++
T Consensus 183 L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 183 LNQLYAFSQTIGG 195 (197)
T ss_dssp CCEEEECBC----
T ss_pred CCEEEeeCcccCC
Confidence 9999999988764
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=4.7e-17 Score=126.80 Aligned_cols=153 Identities=19% Similarity=0.171 Sum_probs=117.4
Q ss_pred ccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeC
Q 040144 79 LVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDL 158 (289)
Q Consensus 79 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 158 (289)
-+.++..++.++.++. .+ .++++.|++++|.++ ...+..+..+++|++|++++|.+.+.. +..|..+++|++|++
T Consensus 13 ~~~v~c~~~~l~~iP~-~l--~~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~L 87 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPT-NL--PETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVL 87 (220)
T ss_dssp TTEEECTTSCCSSCCS-SC--CTTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEEC
T ss_pred CCEEEcCCCCcCcCCC-cc--CcCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEEC
Confidence 3577888888776633 22 268899999999887 444446778889999999999888544 778889999999999
Q ss_pred CCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCceEEEeecceeeee
Q 040144 159 SLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVT 237 (289)
Q Consensus 159 ~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~ 237 (289)
++|. +....+..+. +++|+.|++ ++|.+.+..+..+..+++|+.|++++|.++ .
T Consensus 88 s~N~-l~~l~~~~f~~l~~L~~L~L------~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~------------------~ 142 (220)
T 2v9t_B 88 YGNK-ITELPKSLFEGLFSLQLLLL------NANKINCLRVDAFQDLHNLNLLSLYDNKLQ------------------T 142 (220)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEEC------CSSCCCCCCTTTTTTCTTCCEEECCSSCCS------------------C
T ss_pred CCCc-CCccCHhHccCCCCCCEEEC------CCCCCCEeCHHHcCCCCCCCEEECCCCcCC------------------E
Confidence 9998 6643334455 888888876 888888888888888888998888888777 2
Q ss_pred eccccccccccccEEEecCCeeee
Q 040144 238 LFELHFANLIEMSWFRVGGNQLTL 261 (289)
Q Consensus 238 ~~~~~~~~~~~L~~l~l~~n~~~~ 261 (289)
++...+..+++|+.|++++|++..
T Consensus 143 ~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 143 IAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ECHHHHhCCCCCCEEEeCCCCcCC
Confidence 333367788899999999998864
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=7.6e-17 Score=126.41 Aligned_cols=154 Identities=20% Similarity=0.209 Sum_probs=106.2
Q ss_pred CccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEe
Q 040144 78 SLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLD 157 (289)
Q Consensus 78 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 157 (289)
..+.++.+++.++.++. .+ .++++.|++++|.++ ...+..+..+++|++|++++|.+. .+++..|..+++|+.|+
T Consensus 20 s~~~v~c~~~~l~~ip~-~~--~~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPA-GI--PTNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp ETTEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred eCCEeEccCCCcCccCC-CC--CCCCCEEEcCCCccC-ccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEE
Confidence 45667777777766533 22 377888888888876 444566677788888888888876 45355677788888888
Q ss_pred CCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCceEEEeecceeee
Q 040144 158 LSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNV 236 (289)
Q Consensus 158 l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~ 236 (289)
+++|. +....+..+. +++|+.|++ ++|.+. .+|..+..+++|+.|++++|.++
T Consensus 95 Ls~N~-l~~l~~~~~~~l~~L~~L~L------s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~------------------ 148 (229)
T 3e6j_A 95 LGTNQ-LTVLPSAVFDRLVHLKELFM------CCNKLT-ELPRGIERLTHLTHLALDQNQLK------------------ 148 (229)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEEC------CSSCCC-SCCTTGGGCTTCSEEECCSSCCC------------------
T ss_pred CCCCc-CCccChhHhCcchhhCeEec------cCCccc-ccCcccccCCCCCEEECCCCcCC------------------
Confidence 88887 6644444455 777777765 677777 55666677777777777777666
Q ss_pred eeccccccccccccEEEecCCeeeec
Q 040144 237 TLFELHFANLIEMSWFRVGGNQLTLE 262 (289)
Q Consensus 237 ~~~~~~~~~~~~L~~l~l~~n~~~~~ 262 (289)
.++...+..+++|+.|++++|++...
T Consensus 149 ~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 149 SIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred ccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 23333566778888888888877653
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=7.5e-17 Score=135.13 Aligned_cols=174 Identities=26% Similarity=0.222 Sum_probs=96.8
Q ss_pred cEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhh-cCCCccEEEccCCccCCCCcccccCCCCCcEEe
Q 040144 29 QFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVAN-KLLSLVELRLSNCQLQHFSPLATVNFSSLTMLD 107 (289)
Q Consensus 29 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~ 107 (289)
+.++++++.+..++.. + ...++.|++++|.+...+. ..+. .+++|++|++++|.+....+..+..+++|+.|+
T Consensus 21 ~~l~c~~~~l~~iP~~--~--~~~l~~L~Ls~N~l~~l~~--~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS--L--PSYTALLDLSHNNLSRLRA--EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TEEECCSSCCSSCCSS--C--CTTCSEEECCSSCCCEECT--TSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CEEEeCCCCcCccCcc--C--CCCCCEEECCCCCCCccCh--hhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence 4566666555544421 1 2346667777776665532 1233 566677777777766666555666666777777
Q ss_pred ccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcc-c---c-ccCcceeec
Q 040144 108 LSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRS-M---A-LCNLKSINL 182 (289)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~---~-~~~L~~L~l 182 (289)
+++|.++ ...+..+..+++|++|++++|.+.+.. +..|..+++|+.|++++|. +.. +|.. + . +++|+.|++
T Consensus 95 Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~-l~~-l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 95 LSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVD-RNAFEDMAQLQKLYLSQNQ-ISR-FPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp CCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCS-CCGGGTC----CTTCCEEEC
T ss_pred CCCCcCC-cCCHHHhCCCcCCCEEECCCCcccEEC-HHHhCCcccCCEEECCCCc-CCe-eCHHHhcCcccCCcCCEEEC
Confidence 7766665 333334556666777777666666332 5566666666677766666 442 3322 2 2 444554443
Q ss_pred cccccccCCcccccccccccCCCC--CcEEEccCCeee
Q 040144 183 QESLDMRSSSIYGHLTDQLGQFRN--LVTFNLVNNSIV 218 (289)
Q Consensus 183 ~~~l~l~~~~~~~~~~~~l~~~~~--L~~L~l~~n~~~ 218 (289)
++|.+....+..+..++. ++.|++++|.+.
T Consensus 171 ------~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 171 ------SSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ------CSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ------CCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 555555444444444443 244555555444
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=3.5e-17 Score=137.14 Aligned_cols=176 Identities=19% Similarity=0.193 Sum_probs=123.1
Q ss_pred cEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCccccc-CCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEE
Q 040144 54 EHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATV-NFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLD 132 (289)
Q Consensus 54 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 132 (289)
+.++++++.+...+. .+ .+.++.|++++|.++...+..+. .+++|+.|++++|.++ ...+..+..+++|++|+
T Consensus 21 ~~l~c~~~~l~~iP~---~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 21 NILSCSKQQLPNVPQ---SL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TEEECCSSCCSSCCS---SC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred CEEEeCCCCcCccCc---cC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEE
Confidence 567777777766543 22 23578888888888877666666 7888888888888886 44445577788888888
Q ss_pred ccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccc---cCCCCCc
Q 040144 133 LGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQL---GQFRNLV 208 (289)
Q Consensus 133 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l---~~~~~L~ 208 (289)
+++|.+. .+++..|..+++|++|++++|. +....+..+. +++|+.|++ ++|.++...+..+ ..+++|+
T Consensus 95 Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L------~~N~l~~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 95 LSSNHLH-TLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYL------SQNQISRFPVELIKDGNKLPKLM 166 (361)
T ss_dssp CCSSCCC-EECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEEC------CSSCCCSCCGGGTC----CTTCC
T ss_pred CCCCcCC-cCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEEC------CCCcCCeeCHHHhcCcccCCcCC
Confidence 8888877 4435677888888888888887 6655566666 777777775 7777776555545 4577778
Q ss_pred EEEccCCeeeecCCCceEEEeecceeeeeecccccccccc--ccEEEecCCeeee
Q 040144 209 TFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIE--MSWFRVGGNQLTL 261 (289)
Q Consensus 209 ~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~--L~~l~l~~n~~~~ 261 (289)
.|++++|.++ .++...+..+++ ++.|++.+|++.-
T Consensus 167 ~L~L~~N~l~------------------~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 167 LLDLSSNKLK------------------KLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp EEECCSSCCC------------------CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred EEECCCCCCC------------------ccCHHHhhhccHhhcceEEecCCCccC
Confidence 8877777766 334335556665 4778888888764
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=1.6e-16 Score=123.71 Aligned_cols=153 Identities=18% Similarity=0.165 Sum_probs=103.7
Q ss_pred cEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCc-ccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEE
Q 040144 54 EHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSP-LATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLD 132 (289)
Q Consensus 54 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 132 (289)
++++++++.+...+. .+ ...+++|++++|.++...+ ..+..+++|+.|++++|.++ ...+..+..+++|++|+
T Consensus 14 ~~l~~s~n~l~~iP~---~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE---HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEIL 87 (220)
T ss_dssp TEEECCSSCCSSCCS---CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred CEeEeCCCCcccCcc---CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEE
Confidence 455666665555432 11 2245667777776666533 34566777777777777775 43344566777777777
Q ss_pred ccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEE
Q 040144 133 LGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFN 211 (289)
Q Consensus 133 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~ 211 (289)
+++|.+.+ +++..|..+++|++|++++|. +....|..+. +++|+.|++ ++|.+++..|..+..+++|+.|+
T Consensus 88 Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L------~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 88 LTSNRLEN-VQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSL------YDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp CCSSCCCC-CCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEEC------TTSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCCccCc-cCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEEC------CCCcCCEECHHHhcCCCCCCEEE
Confidence 77777763 335667777778888888777 6655566666 777777775 77777777788888888999999
Q ss_pred ccCCeeeec
Q 040144 212 LVNNSIVGF 220 (289)
Q Consensus 212 l~~n~~~~~ 220 (289)
+++|.+...
T Consensus 160 L~~N~l~c~ 168 (220)
T 2v70_A 160 LLANPFNCN 168 (220)
T ss_dssp CCSCCEECS
T ss_pred ecCcCCcCC
Confidence 998888743
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=4.5e-16 Score=122.02 Aligned_cols=154 Identities=20% Similarity=0.218 Sum_probs=119.1
Q ss_pred cccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEE
Q 040144 52 LLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFL 131 (289)
Q Consensus 52 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 131 (289)
..+.++.+++.+...+. .+ .++|++|++++|.+....+..+..+++|+.|++++|.++ ...+..+..+++|++|
T Consensus 20 s~~~v~c~~~~l~~ip~---~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L 93 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPA---GI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVL 93 (229)
T ss_dssp ETTEEECTTSCCSSCCS---CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred eCCEeEccCCCcCccCC---CC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEE
Confidence 45667777776666543 22 267888888888888877777888888888888888886 3333456778888899
Q ss_pred EccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEE
Q 040144 132 DLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTF 210 (289)
Q Consensus 132 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L 210 (289)
++++|.++ .+++..+..+++|++|++++|. +. .+|..+. +++|+.|++ ++|.+.+..+..+..+++|+.|
T Consensus 94 ~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~-l~-~lp~~~~~l~~L~~L~L------~~N~l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 94 DLGTNQLT-VLPSAVFDRLVHLKELFMCCNK-LT-ELPRGIERLTHLTHLAL------DQNQLKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-CC-SCCTTGGGCTTCSEEEC------CSSCCCCCCTTTTTTCTTCCEE
T ss_pred ECCCCcCC-ccChhHhCcchhhCeEeccCCc-cc-ccCcccccCCCCCEEEC------CCCcCCccCHHHHhCCCCCCEE
Confidence 99888887 4435667888889999998888 55 6777777 888888876 7888887777788899999999
Q ss_pred EccCCeeeec
Q 040144 211 NLVNNSIVGF 220 (289)
Q Consensus 211 ~l~~n~~~~~ 220 (289)
++++|.+...
T Consensus 165 ~l~~N~~~c~ 174 (229)
T 3e6j_A 165 YLFGNPWDCE 174 (229)
T ss_dssp ECTTSCBCTT
T ss_pred EeeCCCccCC
Confidence 9999988743
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=2.2e-16 Score=126.35 Aligned_cols=168 Identities=20% Similarity=0.257 Sum_probs=107.8
Q ss_pred CCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCc
Q 040144 25 LSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLT 104 (289)
Q Consensus 25 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~ 104 (289)
+.++..+++.++.+..... +..+++|++|++++|.+...+ .+..+++|++|++++|.+....+ +..+++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~~---~~~l~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~ 88 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVS---QKELSGVQNFNGDNSNIQSLA----GMQFFTNLKELHLSHNQISDLSP--LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHTCSCTTSEEC---HHHHTTCSEEECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCC
T ss_pred HHHHHHHHhcCCCcccccc---hhhcCcCcEEECcCCCcccch----HHhhCCCCCEEECCCCccCCChh--hccCCCCC
Confidence 4455556666655544431 456777777777777666543 45667777777777777776543 66777777
Q ss_pred EEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeecc
Q 040144 105 MLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQ 183 (289)
Q Consensus 105 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~ 183 (289)
.|++++|.++ .++. +.. ++|++|++++|.+.+ + ..+..+++|+.|++++|. +.+ .+ .+. +++|+.|++
T Consensus 89 ~L~L~~N~l~--~l~~-~~~-~~L~~L~L~~N~l~~-~--~~l~~l~~L~~L~Ls~N~-i~~-~~-~l~~l~~L~~L~L- 157 (263)
T 1xeu_A 89 ELSVNRNRLK--NLNG-IPS-ACLSRLFLDNNELRD-T--DSLIHLKNLEILSIRNNK-LKS-IV-MLGFLSKLEVLDL- 157 (263)
T ss_dssp EEECCSSCCS--CCTT-CCC-SSCCEEECCSSCCSB-S--GGGTTCTTCCEEECTTSC-CCB-CG-GGGGCTTCCEEEC-
T ss_pred EEECCCCccC--CcCc-ccc-CcccEEEccCCccCC-C--hhhcCcccccEEECCCCc-CCC-Ch-HHccCCCCCEEEC-
Confidence 7777777775 2332 222 677777777777763 3 246677777777777777 543 23 444 667776665
Q ss_pred ccccccCCcccccccccccCCCCCcEEEccCCeeee
Q 040144 184 ESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVG 219 (289)
Q Consensus 184 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 219 (289)
++|.+.+. ..+..+++|+.|++++|.+.+
T Consensus 158 -----~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 158 -----HGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp -----TTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred -----CCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 66777655 456677777777777776663
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=1.2e-16 Score=127.98 Aligned_cols=166 Identities=20% Similarity=0.241 Sum_probs=124.8
Q ss_pred CcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEE
Q 040144 4 LRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELR 83 (289)
Q Consensus 4 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 83 (289)
++.+++..+.+++. + .+..+++|++|++++|.+...+. +..+++|++|++++|.+...+. +..+++|++|+
T Consensus 21 l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~l~~---l~~l~~L~~L~L~~N~i~~~~~----l~~l~~L~~L~ 91 (263)
T 1xeu_A 21 AVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQSLAG---MQFFTNLKELHLSHNQISDLSP----LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCCCTT---GGGCTTCCEEECCSSCCCCCGG----GTTCSSCCEEE
T ss_pred HHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcccchH---HhhCCCCCEEECCCCccCCChh----hccCCCCCEEE
Confidence 34456667776643 2 47788899999999887766552 6778899999999998877643 67888999999
Q ss_pred ccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCc
Q 040144 84 LSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTG 163 (289)
Q Consensus 84 l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~ 163 (289)
+++|.+..... +.. ++|+.|++++|.++ ..+ .+..+++|++|++++|.++ .+ + .++.+++|+.|++++|.
T Consensus 92 L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~--~~~-~l~~l~~L~~L~Ls~N~i~-~~-~-~l~~l~~L~~L~L~~N~- 161 (263)
T 1xeu_A 92 VNRNRLKNLNG--IPS-ACLSRLFLDNNELR--DTD-SLIHLKNLEILSIRNNKLK-SI-V-MLGFLSKLEVLDLHGNE- 161 (263)
T ss_dssp CCSSCCSCCTT--CCC-SSCCEEECCSSCCS--BSG-GGTTCTTCCEEECTTSCCC-BC-G-GGGGCTTCCEEECTTSC-
T ss_pred CCCCccCCcCc--ccc-CcccEEEccCCccC--CCh-hhcCcccccEEECCCCcCC-CC-h-HHccCCCCCEEECCCCc-
Confidence 99998887543 223 88999999999886 233 4778889999999999887 34 3 67888899999999988
Q ss_pred ccCCCCcccc-ccCcceeeccccccccCCccccc
Q 040144 164 LTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGH 196 (289)
Q Consensus 164 ~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~ 196 (289)
+.+. ..+. +++|+.|++ ++|.+...
T Consensus 162 i~~~--~~l~~l~~L~~L~l------~~N~~~~~ 187 (263)
T 1xeu_A 162 ITNT--GGLTRLKKVNWIDL------TGQKCVNE 187 (263)
T ss_dssp CCBC--TTSTTCCCCCEEEE------EEEEEECC
T ss_pred Ccch--HHhccCCCCCEEeC------CCCcccCC
Confidence 6544 4555 888888876 67777644
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=7.4e-16 Score=127.46 Aligned_cols=239 Identities=14% Similarity=0.097 Sum_probs=142.0
Q ss_pred CCCCcEEEccCCccc--ccCCCccCCCCCCcEEeCCCccccccCCCcccCC--------CCcccEEeccCccccccchhh
Q 040144 1 MGNLRYLNFSKTRIC--GIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSG--------ISLLEHLDLRYVNLSIAFDWL 70 (289)
Q Consensus 1 ~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~--------l~~L~~L~l~~~~~~~~~~~~ 70 (289)
+++|++|+|++|.+. ...+.. ++.++.+.+..+. ++... +.+ +.+|+.+++.+ .+.....
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~~---I~~~a-F~~~~~~~~~g~~~L~~l~L~~-~i~~I~~-- 117 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMANF---VPAYA-FSNVVNGVTKGKQTLEKVILSE-KIKNIED-- 117 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTTE---ECTTT-TEEEETTEEEECTTCCC-CBCT-TCCEECT--
T ss_pred hccCeEEecCcceeEEecCcccc---ccccccccccccc---cCHHH-hcccccccccccCCCcEEECCc-cccchhH--
Confidence 468999999999887 212111 1222333333331 12111 445 67777777766 4444422
Q ss_pred HhhhcCCCccEEEccCCccCCCCcccccCCCCCcEEeccCCC-------CCC------------------cchhhHhh--
Q 040144 71 MVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQ-------FDN------------------SFILSWVF-- 123 (289)
Q Consensus 71 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~-------~~~------------------~~~~~~~~-- 123 (289)
..|..+++|+++.+.++.+..+.+..|..+.++..+...... +.+ ..++..+.
T Consensus 118 ~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~ 197 (329)
T 3sb4_A 118 AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKA 197 (329)
T ss_dssp TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHT
T ss_pred HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhc
Confidence 145666777777777776666555666665555555443311 000 01111111
Q ss_pred --cCCCCCEEEccCceeeeeeChhhh-cCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccc
Q 040144 124 --ALSHLPFLDLGFNNFQGTIDLEAL-GNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTD 199 (289)
Q Consensus 124 --~~~~L~~L~l~~n~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~ 199 (289)
...+++.+.+.++-.. .. ...+ ..+++|+.+++.+|. +....+..|. +.+|+++.+ ..| +....+.
T Consensus 198 ~~~~~~~~~l~~~~~l~~-~~-~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l------~~n-i~~I~~~ 267 (329)
T 3sb4_A 198 GLQPRDINFLTIEGKLDN-AD-FKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKL------PHN-LKTIGQR 267 (329)
T ss_dssp TCCGGGCSEEEEEECCCH-HH-HHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEEC------CTT-CCEECTT
T ss_pred ccCccccceEEEeeeecH-HH-HHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEEC------Ccc-cceehHH
Confidence 1223444444332111 11 1112 237889999998887 5543444566 888888886 444 6656777
Q ss_pred cccCCCCCc-EEEccCCeeeecCCCceEEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCccccccccEEec
Q 040144 200 QLGQFRNLV-TFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGL 278 (289)
Q Consensus 200 ~l~~~~~L~-~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 278 (289)
+|.+|++|+ .+++.+ .++ .++...|.+|++|+.+++.+|.+....+..|..+++|+.++.
T Consensus 268 aF~~~~~L~~~l~l~~-~l~------------------~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 268 VFSNCGRLAGTLELPA-SVT------------------AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTTCTTCCEEEEECT-TCC------------------EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred HhhCChhccEEEEEcc-cce------------------EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 888999998 888875 444 566558899999999999999999877778999999998763
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=5.5e-17 Score=147.37 Aligned_cols=134 Identities=23% Similarity=0.235 Sum_probs=77.1
Q ss_pred cccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc
Q 040144 94 PLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA 173 (289)
Q Consensus 94 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 173 (289)
+..+..++.|+.|++++|.+. .++..+..+++|++|++++|.++ .+ |..++.+++|++|+|++|. +. .+|..+.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~-~l-p~~~~~l~~L~~L~Ls~N~-l~-~lp~~~~ 290 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF--NISANIFKYDFLTRLYLNGNSLT-EL-PAEIKNLSNLRVLDLSHNR-LT-SLPAELG 290 (727)
T ss_dssp -----CCCCCCEEECTTSCCS--CCCGGGGGCCSCSCCBCTTSCCS-CC-CGGGGGGTTCCEEECTTSC-CS-SCCSSGG
T ss_pred hhhhccCCCCcEEECCCCCCC--CCChhhcCCCCCCEEEeeCCcCc-cc-ChhhhCCCCCCEEeCcCCc-CC-ccChhhc
Confidence 344555666666666666664 34444445666666666666665 45 5556666666666666666 44 5566665
Q ss_pred -ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCce--------EEEeecceeeeeecc
Q 040144 174 -LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF--------ELHIYDNKLNVTLFE 240 (289)
Q Consensus 174 -~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~--------~L~l~~n~~~~~~~~ 240 (289)
+++|+.|++ ++|.++ .+|..++.+++|+.|++++|.+++.+|..+ .+++.+|.+++.+|.
T Consensus 291 ~l~~L~~L~L------~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 291 SCFQLKYFYF------FDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp GGTTCSEEEC------CSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCCCCCEEEC------CCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 666666654 556555 445556666666666666666665554443 345666666655544
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=5e-16 Score=115.78 Aligned_cols=136 Identities=19% Similarity=0.132 Sum_probs=99.6
Q ss_pred CCCCCEEEccCceee-eeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCccccccccccc
Q 040144 125 LSHLPFLDLGFNNFQ-GTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLG 202 (289)
Q Consensus 125 ~~~L~~L~l~~n~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~ 202 (289)
++++++|++++|.+. +.+ +..+..+++|++|++++|. +.+. ..+. +++|+.|++ ++|.+.+.+|..+.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i-~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~L------s~N~l~~~~~~~~~ 92 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKI-EGLTAEFVNLEFLSLINVG-LISV--SNLPKLPKLKKLEL------SENRIFGGLDMLAE 92 (168)
T ss_dssp TTSCSEEECCSCBCBTTBC-SSCCGGGGGCCEEEEESSC-CCCC--SSCCCCSSCCEEEE------ESCCCCSCCCHHHH
T ss_pred cccCCEEECCCCCCChhhH-HHHHHhCCCCCEEeCcCCC-CCCh--hhhccCCCCCEEEC------cCCcCchHHHHHHh
Confidence 466888888888776 445 5556777888888888887 5543 4555 777777775 77777766777777
Q ss_pred CCCCCcEEEccCCeeeecCCCceEEEeecceeeeeeccccccccccccEEEecCCeeeeccC---CCccccccccEEecc
Q 040144 203 QFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVK---HDWIPHFQLVALGLH 279 (289)
Q Consensus 203 ~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~---~~~~~~~~L~~l~l~ 279 (289)
.+++|+.|++++|.+++. ..+. .+..+++|+.|++++|++++..+ ..+..+++|+.|+++
T Consensus 93 ~l~~L~~L~Ls~N~l~~~----------------~~~~-~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKDI----------------STLE-PLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp HCTTCCEEECBSSSCCSS----------------GGGG-GGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred hCCCCCEEeccCCccCcc----------------hhHH-HHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCC
Confidence 788888888888877721 0113 67788899999999999886433 267888899999999
Q ss_pred cccCccCCC
Q 040144 280 SCYIGSRFP 288 (289)
Q Consensus 280 ~n~~~~~~p 288 (289)
+|.+. .+|
T Consensus 156 ~n~~~-~~~ 163 (168)
T 2ell_A 156 DREDQ-EAP 163 (168)
T ss_dssp ETTSC-BCC
T ss_pred CCChh-hcc
Confidence 99885 454
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=1.1e-17 Score=147.68 Aligned_cols=195 Identities=18% Similarity=0.184 Sum_probs=117.2
Q ss_pred CCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCc-------------cCCCCcccccCCCCCcEEe-ccCCCC
Q 040144 48 SGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQ-------------LQHFSPLATVNFSSLTMLD-LSHNQF 113 (289)
Q Consensus 48 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------l~~~~~~~l~~~~~L~~L~-l~~~~~ 113 (289)
..+++|+.|++++|.+...|. .+..+++|++|++.++. .....+..++.+++|+.|+ ++.+.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~---~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQS---ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHH---HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred ccCccceeccCChhhHHhhHH---HHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc
Confidence 457788888888888776554 77777888888876553 2222334445556666666 443322
Q ss_pred CCcchhh------Hhh--cCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccc
Q 040144 114 DNSFILS------WVF--ALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQE 184 (289)
Q Consensus 114 ~~~~~~~------~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~ 184 (289)
. .++. .+. ....|+.|++++|.++ .+ |. ++.+++|+.|++++|. +. .+|..+. +++|+.|++
T Consensus 423 ~--~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~l-p~-~~~l~~L~~L~Ls~N~-l~-~lp~~~~~l~~L~~L~L-- 493 (567)
T 1dce_A 423 D--DLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VL-CH-LEQLLLVTHLDLSHNR-LR-ALPPALAALRCLEVLQA-- 493 (567)
T ss_dssp H--HHHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SC-CC-GGGGTTCCEEECCSSC-CC-CCCGGGGGCTTCCEEEC--
T ss_pred c--hhhhhhhhcccccccCccCceEEEecCCCCC-CC-cC-ccccccCcEeecCccc-cc-ccchhhhcCCCCCEEEC--
Confidence 1 0110 011 1124667777777666 34 43 6667777777777776 44 5666666 666766665
Q ss_pred cccccCCcccccccccccCCCCCcEEEccCCeeeecCCCceEEEeecceeeeee-ccccccccccccEEEecCCeeeecc
Q 040144 185 SLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTL-FELHFANLIEMSWFRVGGNQLTLEV 263 (289)
Q Consensus 185 ~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~-~~~~~~~~~~L~~l~l~~n~~~~~~ 263 (289)
++|.+++ +| .++.+++|+.|++++|.+++. . |. .++++++|+.|++++|++++..
T Consensus 494 ----s~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~-----------------~~p~-~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 494 ----SDNALEN-VD-GVANLPRLQELLLCNNRLQQS-----------------AAIQ-PLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp ----CSSCCCC-CG-GGTTCSSCCEEECCSSCCCSS-----------------STTG-GGGGCTTCCEEECTTSGGGGSS
T ss_pred ----CCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCC-----------------CCcH-HHhcCCCCCEEEecCCcCCCCc
Confidence 6666664 34 566677777777766666522 2 44 6777788888888888877643
Q ss_pred CCC---ccccccccEEec
Q 040144 264 KHD---WIPHFQLVALGL 278 (289)
Q Consensus 264 ~~~---~~~~~~L~~l~l 278 (289)
+.. +..+++|+.|++
T Consensus 550 ~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 550 GIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCTTHHHHHCTTCSEEEC
T ss_pred cHHHHHHHHCcccCccCC
Confidence 321 123566776653
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=1.1e-17 Score=147.66 Aligned_cols=96 Identities=25% Similarity=0.249 Sum_probs=46.2
Q ss_pred ccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeC
Q 040144 79 LVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDL 158 (289)
Q Consensus 79 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 158 (289)
|+.|++++|.++.+ +. ++.+++|+.|++++|.++ .+|..++.+++|+.|++++|.+++ + | .++.+++|+.|++
T Consensus 443 L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~-l-p-~l~~l~~L~~L~L 515 (567)
T 1dce_A 443 VRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALEN-V-D-GVANLPRLQELLL 515 (567)
T ss_dssp CSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCC-C-G-GGTTCSSCCEEEC
T ss_pred ceEEEecCCCCCCC-cC-ccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCC-C-c-ccCCCCCCcEEEC
Confidence 45555555555443 22 444555555555555553 334444455555555555555542 3 3 4445555555555
Q ss_pred CCCCcccCCC-Ccccc-ccCcceeec
Q 040144 159 SLNTGLTGRI-PRSMA-LCNLKSINL 182 (289)
Q Consensus 159 ~~n~~~~~~~-~~~~~-~~~L~~L~l 182 (289)
++|. +.+.. |..+. +++|+.|++
T Consensus 516 s~N~-l~~~~~p~~l~~l~~L~~L~L 540 (567)
T 1dce_A 516 CNNR-LQQSAAIQPLVSCPRLVLLNL 540 (567)
T ss_dssp CSSC-CCSSSTTGGGGGCTTCCEEEC
T ss_pred CCCC-CCCCCCcHHHhcCCCCCEEEe
Confidence 5554 43332 44444 455554443
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=2.4e-15 Score=112.12 Aligned_cols=131 Identities=22% Similarity=0.131 Sum_probs=91.3
Q ss_pred CCCCcEEeCCCcccc--ccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCC
Q 040144 25 LSNLQFLDLSSKYLL--YVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSS 102 (289)
Q Consensus 25 l~~L~~L~l~~~~~~--~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 102 (289)
.++|++|++++|.+. .++. .+..+++|++|++++|.+... . .+..+++|++|++++|.+....+..+..+++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~--~~~~l~~L~~L~l~~n~l~~~-~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEG--LTAEFVNLEFLSLINVGLISV-S---NLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSS--CCGGGGGCCEEEEESSCCCCC-S---SCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred cccCCEEECCCCCCChhhHHH--HHHhCCCCCEEeCcCCCCCCh-h---hhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 467777888777765 3332 256677788888887776655 2 5667778888888888877755555566788
Q ss_pred CcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeCh---hhhcCCCCccEEeCCCCC
Q 040144 103 LTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDL---EALGNLTSINRLDLSLNT 162 (289)
Q Consensus 103 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~---~~~~~~~~L~~L~l~~n~ 162 (289)
|+.|++++|.+++...+..+..+++|++|++++|.+.+ .++ ..+..+++|++|++++|.
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETT
T ss_pred CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCC
Confidence 88888888877622222556677888888888887763 313 367778888888888876
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=6.9e-15 Score=112.03 Aligned_cols=129 Identities=21% Similarity=0.256 Sum_probs=90.9
Q ss_pred cEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChh-hhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceee
Q 040144 104 TMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLE-ALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSIN 181 (289)
Q Consensus 104 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~ 181 (289)
+.++++++.++ .+|..+ ..++++|++++|.+.+.. +. .++.+++|++|++++|. +.+..|..+. +++|+.|+
T Consensus 11 ~~l~~s~~~l~--~ip~~~--~~~l~~L~l~~n~i~~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRGLK--EIPRDI--PLHTTELLLNDNELGRIS-SDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TEEECTTSCCS--SCCSCC--CTTCSEEECCSCCCCSBC-CSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCcC--cCccCC--CCCCCEEECCCCcCCccC-CccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEE
Confidence 67788887774 455433 237888888888876332 32 47788888888888887 6666666676 77777777
Q ss_pred ccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCceEEEeecceeeeeeccccccccccccEEEecCCeeee
Q 040144 182 LQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTL 261 (289)
Q Consensus 182 l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 261 (289)
+ ++|.+++..+..+..+++|+.|++++|.+++ ..+. .+..+++|++|++++|++..
T Consensus 85 L------s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------------~~~~-~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 85 L------GENKIKEISNKMFLGLHQLKTLNLYDNQISC-----------------VMPG-SFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp C------CSCCCCEECSSSSTTCTTCCEEECCSSCCCE-----------------ECTT-SSTTCTTCCEEECTTCCBCC
T ss_pred C------CCCcCCccCHHHhcCCCCCCEEECCCCcCCe-----------------eCHH-HhhcCCCCCEEEeCCCCccC
Confidence 5 7777777777777777777777777776662 2333 66777888888888887775
Q ss_pred c
Q 040144 262 E 262 (289)
Q Consensus 262 ~ 262 (289)
.
T Consensus 141 ~ 141 (192)
T 1w8a_A 141 N 141 (192)
T ss_dssp S
T ss_pred c
Confidence 4
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=5.2e-15 Score=107.97 Aligned_cols=107 Identities=23% Similarity=0.172 Sum_probs=49.8
Q ss_pred CCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCC
Q 040144 48 SGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSH 127 (289)
Q Consensus 48 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 127 (289)
..+++|++|++++|.+... . .+..+++|++|++++|.+....+..+..+++|+.|++++|.+++...+..++.+++
T Consensus 39 ~~l~~L~~L~l~~n~l~~~-~---~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~ 114 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSI-A---NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLEN 114 (149)
T ss_dssp TTCTTCCEEECTTSCCCCC-T---TCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTT
T ss_pred hhcCCCcEEECcCCCCCCc-h---hhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCC
Confidence 3444444444444444333 1 33444455555555555444333333445555555555555541112234455555
Q ss_pred CCEEEccCceeeeeeCh---hhhcCCCCccEEeCC
Q 040144 128 LPFLDLGFNNFQGTIDL---EALGNLTSINRLDLS 159 (289)
Q Consensus 128 L~~L~l~~n~~~~~~~~---~~~~~~~~L~~L~l~ 159 (289)
|++|++++|.+++ .++ ..+..+++|+.|+++
T Consensus 115 L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 115 LKSLDLFNCEVTN-LNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CCEEECTTCGGGG-STTHHHHHHHHCTTCCEETTB
T ss_pred CCEEeCcCCcccc-hHHHHHHHHHHCCCcccccCC
Confidence 5555555555542 212 245555555555553
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=6.5e-16 Score=140.37 Aligned_cols=140 Identities=23% Similarity=0.252 Sum_probs=94.1
Q ss_pred hhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccc
Q 040144 119 LSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHL 197 (289)
Q Consensus 119 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~ 197 (289)
+..+..+..|+.|++++|.+. .+ +..+..+++|++|+|++|. +. .+|..+. +++|+.|++ ++|.++ .+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l-~~~~~~l~~L~~L~Ls~N~-l~-~lp~~~~~l~~L~~L~L------s~N~l~-~l 285 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NI-SANIFKYDFLTRLYLNGNS-LT-ELPAEIKNLSNLRVLDL------SHNRLT-SL 285 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CC-CGGGGGCCSCSCCBCTTSC-CS-CCCGGGGGGTTCCEEEC------TTSCCS-SC
T ss_pred hhhhccCCCCcEEECCCCCCC-CC-ChhhcCCCCCCEEEeeCCc-Cc-ccChhhhCCCCCCEEeC------cCCcCC-cc
Confidence 445667778888888888876 56 5556678888888888887 55 6777777 888887776 778877 56
Q ss_pred cccccCCCCCcEEEccCCeeeecCCCceEEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCcccccc-ccEE
Q 040144 198 TDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQ-LVAL 276 (289)
Q Consensus 198 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~-L~~l 276 (289)
|..+..+++|+.|++++|.++ .+|. .++++++|+.|+|++|++++.+|..+..... ...+
T Consensus 286 p~~~~~l~~L~~L~L~~N~l~------------------~lp~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l 346 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNMVT------------------TLPW-EFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIF 346 (727)
T ss_dssp CSSGGGGTTCSEEECCSSCCC------------------CCCS-STTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHH
T ss_pred ChhhcCCCCCCEEECCCCCCC------------------ccCh-hhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHH
Confidence 777888888888888887776 4555 5666777777777777776655555443321 2235
Q ss_pred ecccccCccCCC
Q 040144 277 GLHSCYIGSRFP 288 (289)
Q Consensus 277 ~l~~n~~~~~~p 288 (289)
++++|.+++.+|
T Consensus 347 ~l~~N~l~~~~p 358 (727)
T 4b8c_D 347 YLRDNRPEIPLP 358 (727)
T ss_dssp HHHHCCCCCCCC
T ss_pred hhccCcccCcCc
Confidence 566666665555
No 126
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.56 E-value=3.6e-13 Score=113.97 Aligned_cols=254 Identities=14% Similarity=0.128 Sum_probs=131.9
Q ss_pred CCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEE
Q 040144 3 NLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVEL 82 (289)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 82 (289)
.++.+.+.. .++.....+|.++ +|+.+.+..+ +..++... +.++ .|+.+.+.. .+..... ..+..+++|+.+
T Consensus 114 ~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~a-F~~~-~L~~i~lp~-~l~~I~~--~aF~~c~~L~~l 185 (401)
T 4fdw_A 114 GYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMA-FFNS-TVQEIVFPS-TLEQLKE--DIFYYCYNLKKA 185 (401)
T ss_dssp SCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTT-TTTC-CCCEEECCT-TCCEECS--STTTTCTTCCEE
T ss_pred CccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHh-cCCC-CceEEEeCC-CccEehH--HHhhCcccCCee
Confidence 344455543 2333444556664 5777777653 33343333 4443 577777654 3333321 145666777777
Q ss_pred EccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCC
Q 040144 83 RLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNT 162 (289)
Q Consensus 83 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 162 (289)
++.++.++.+....|. +.+|+.+.+..+ ++ ......+..+.+|+.+++..+ +. .+...+|.+ .+|+.+.+..+
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp~~- 258 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLPNG- 258 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEETT-
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeCCC-
Confidence 7777666665555555 466777776643 33 233344556666777776654 33 333455555 56666666332
Q ss_pred cccCCCCcccc-ccCcceeeccccccccCCccc-----ccccccccCCCCCcEEEccCCeeeecCCCce-------EEEe
Q 040144 163 GLTGRIPRSMA-LCNLKSINLQESLDMRSSSIY-----GHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF-------ELHI 229 (289)
Q Consensus 163 ~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~-----~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~-------~L~l 229 (289)
+.......|. +++|+.+.+ .++.+. .....+|.+|++|+.+.+.+ .+.......+ .+.+
T Consensus 259 -i~~I~~~aF~~c~~L~~l~l------~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 259 -VTNIASRAFYYCPELAEVTT------YGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp -CCEECTTTTTTCTTCCEEEE------ESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEE
T ss_pred -ccEEChhHhhCCCCCCEEEe------CCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEE
Confidence 2322334444 666666665 222221 23445566666777776653 2331111111 3333
Q ss_pred ecceeeeeeccccccccccccEEEecCCeeeeccCCCccccc-cccEEeccccc
Q 040144 230 YDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHF-QLVALGLHSCY 282 (289)
Q Consensus 230 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~-~L~~l~l~~n~ 282 (289)
..+ ++ .+...+|.++ +|+.+.+.+|.+.......|..++ .+..+.+..+.
T Consensus 331 p~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 331 PAN-VT-QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CTT-CC-EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred Ccc-cc-EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 222 22 3444466666 777777777766554444555553 45666655543
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.55 E-value=4e-14 Score=107.78 Aligned_cols=130 Identities=22% Similarity=0.182 Sum_probs=73.0
Q ss_pred cEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEEec
Q 040144 29 QFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDL 108 (289)
Q Consensus 29 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l 108 (289)
++++++++.+..++.. + ...+++|++++|.+...+. ...+..+++|++|++++|.++...+..+..+++|+.|++
T Consensus 11 ~~l~~s~~~l~~ip~~--~--~~~l~~L~l~~n~i~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD--I--PLHTTELLLNDNELGRISS-DGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCSSCCSC--C--CTTCSEEECCSCCCCSBCC-SCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcCcCccC--C--CCCCCEEECCCCcCCccCC-ccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 4555555544433321 1 1255566666665554422 002455666666666666666655556666666666666
Q ss_pred cCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccC
Q 040144 109 SHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTG 166 (289)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 166 (289)
++|.++ ...+..+..+++|++|++++|.+++.. +..+..+++|+++++++|. +..
T Consensus 86 s~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~-l~c 140 (192)
T 1w8a_A 86 GENKIK-EISNKMFLGLHQLKTLNLYDNQISCVM-PGSFEHLNSLTSLNLASNP-FNC 140 (192)
T ss_dssp CSCCCC-EECSSSSTTCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECTTCC-BCC
T ss_pred CCCcCC-ccCHHHhcCCCCCCEEECCCCcCCeeC-HHHhhcCCCCCEEEeCCCC-ccC
Confidence 666665 333344555666666666666666443 5566666666666666666 443
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=3.1e-14 Score=103.78 Aligned_cols=126 Identities=20% Similarity=0.152 Sum_probs=81.7
Q ss_pred CCcccEEeccCcccc--ccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCC
Q 040144 50 ISLLEHLDLRYVNLS--IAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSH 127 (289)
Q Consensus 50 l~~L~~L~l~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 127 (289)
.+++++|++++|.+. ..+. .+..+++|++|++++|.+... ..+..+++|+.|++++|.++ ...+..+..+++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~ 89 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEG---LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVS-GGLEVLAEKCPN 89 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCS---CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCC-SCTHHHHHHCTT
T ss_pred CccCeEEEccCCcCChhHHHH---HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCccc-chHHHHhhhCCC
Confidence 456777777777766 2333 456677777888877777665 55667777777777777776 335666666777
Q ss_pred CCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCC---cccc-ccCcceeec
Q 040144 128 LPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIP---RSMA-LCNLKSINL 182 (289)
Q Consensus 128 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~---~~~~-~~~L~~L~l 182 (289)
|++|++++|.+.+...+..++.+++|++|++++|. +.+..+ ..+. +++|+.|++
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 77777777777632113567777777777777776 543322 2344 556665554
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.54 E-value=1e-12 Score=111.19 Aligned_cols=235 Identities=11% Similarity=0.099 Sum_probs=169.0
Q ss_pred CCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCC
Q 040144 24 NLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSL 103 (289)
Q Consensus 24 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L 103 (289)
.+..++.+.+.+ .+..++... +.++ +|+.+.+..+ +..... ..+.+ ..|+.+.+.. .+..+....|.++.+|
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~a-F~~~-~L~~i~l~~~-i~~I~~--~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L 182 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDA-FRNS-QIAKVVLNEG-LKSIGD--MAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNL 182 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTT-TTTC-CCSEEECCTT-CCEECT--TTTTT-CCCCEEECCT-TCCEECSSTTTTCTTC
T ss_pred ecCCccEEEECC-ccCEehHhh-cccC-CccEEEeCCC-ccEECH--HhcCC-CCceEEEeCC-CccEehHHHhhCcccC
Confidence 357788888865 344444443 5565 7999999766 444322 14444 4699999986 6677777889999999
Q ss_pred cEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCc-cccccCcceeec
Q 040144 104 TMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPR-SMALCNLKSINL 182 (289)
Q Consensus 104 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~l 182 (289)
+.+++..|.++ .++.......+|+.+.+..+ +. .+...+|.++++|+.+.+..+ +. .++. +|.-++|+.+.+
T Consensus 183 ~~l~l~~n~l~--~I~~~aF~~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~--l~-~I~~~aF~~~~L~~i~l 255 (401)
T 4fdw_A 183 KKADLSKTKIT--KLPASTFVYAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN--VS-TIGQEAFRESGITTVKL 255 (401)
T ss_dssp CEEECTTSCCS--EECTTTTTTCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT--CC-EECTTTTTTCCCSEEEE
T ss_pred CeeecCCCcce--EechhhEeecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC--cc-CccccccccCCccEEEe
Confidence 99999998886 34433333689999999865 55 455778999999999999875 33 2333 333567888875
Q ss_pred cccccccCCcccccccccccCCCCCcEEEccCCeee-----ecCCCce-------EEEeecceeeeeecccccccccccc
Q 040144 183 QESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIV-----GFIPWSF-------ELHIYDNKLNVTLFELHFANLIEMS 250 (289)
Q Consensus 183 ~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~-----~~~~~~~-------~L~l~~n~~~~~~~~~~~~~~~~L~ 250 (289)
.+.+......+|.+|++|+.+.+.+|.+. ...+..+ .+.+.+ .+. .++...|.+|++|+
T Consensus 256 -------p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 256 -------PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVT 326 (401)
T ss_dssp -------ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCC
T ss_pred -------CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCcc
Confidence 23455566778999999999999988664 1111121 677774 355 67776899999999
Q ss_pred EEEecCCeeeeccCCCccccccccEEecccccCc
Q 040144 251 WFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIG 284 (289)
Q Consensus 251 ~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~ 284 (289)
.+.+..+ ++......|..+ +|+.+++++|...
T Consensus 327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 9999765 666666789999 9999999998765
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=5.5e-14 Score=105.56 Aligned_cols=131 Identities=16% Similarity=0.169 Sum_probs=96.0
Q ss_pred CcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceee
Q 040144 103 LTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSIN 181 (289)
Q Consensus 103 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~ 181 (289)
.+.++++++.++ .++.. ..+++++|++++|.+. .+++..+..+++|++|++++|. +....+..+. +++|+.|+
T Consensus 9 ~~~l~~~~~~l~--~~p~~--~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 9 GTEIRCNSKGLT--SVPTG--IPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILY 82 (177)
T ss_dssp TTEEECCSSCCS--SCCTT--CCTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEecCCCCc--cCCCC--CCCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEE
Confidence 467888888775 34432 2468899999998887 4435667888889999999888 6644444556 78888877
Q ss_pred ccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCceEEEeecceeeeeeccccccccccccEEEecCCeeee
Q 040144 182 LQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTL 261 (289)
Q Consensus 182 l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 261 (289)
+ ++|.+++..+..+..+++|+.|++++|.++ .++...+..+++|+.|++++|++.+
T Consensus 83 l------~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~------------------~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 83 L------HENKLQSLPNGVFDKLTQLKELALDTNQLK------------------SVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp C------CSSCCCCCCTTTTTTCTTCCEEECCSSCCS------------------CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred C------CCCCccccCHHHhhCCcccCEEECcCCcce------------------EeCHHHhcCCcccCEEEecCCCeec
Confidence 6 778888777777788888888888887776 3343356778888888888888876
Q ss_pred cc
Q 040144 262 EV 263 (289)
Q Consensus 262 ~~ 263 (289)
..
T Consensus 139 ~~ 140 (177)
T 2o6r_A 139 SC 140 (177)
T ss_dssp CH
T ss_pred cC
Confidence 43
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.52 E-value=3.1e-14 Score=117.70 Aligned_cols=246 Identities=14% Similarity=0.074 Sum_probs=137.2
Q ss_pred CCCCcEEeCCCccccccCCCcccCC-CCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccC----
Q 040144 25 LSNLQFLDLSSKYLLYVDNFLWLSG-ISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVN---- 99 (289)
Q Consensus 25 l~~L~~L~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~---- 99 (289)
++++++|.++++- .... ...+.. +++|+.|+|++|.+..... ....++.++.+.+..+.+ ....|.+
T Consensus 24 ~~~l~~L~l~g~i-~~~~-~~~l~~~l~~L~~LdLs~n~i~~~~~---~~~~~~~~~~~~~~~~~I---~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAED-FRHLRDEFPSLKVLDISNAEIKMYSG---KAGTYPNGKFYIYMANFV---PAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEEE-CHHH-HHHHHHSCTTCCEEEEEEEEECCEEE---SSSSSGGGCCEEECTTEE---CTTTTEEEETT
T ss_pred hCceeEEEEeccc-cHHH-HHHHHHhhccCeEEecCcceeEEecC---cccccccccccccccccc---CHHHhcccccc
Confidence 5678888887632 1111 111233 6788889998888773211 011122233444444432 2345556
Q ss_pred ----CCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCc---ccCCCCccc
Q 040144 100 ----FSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTG---LTGRIPRSM 172 (289)
Q Consensus 100 ----~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~---~~~~~~~~~ 172 (289)
+++|+.+++.. .++ ......|..+++|+++++..|.+. .+.+.+|..+.++..+....... ........+
T Consensus 96 ~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f 172 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAF 172 (329)
T ss_dssp EEEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCE
T ss_pred cccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhcccccccccc
Confidence 78888888877 565 334455677888888888888766 44466777777677666655220 000011122
Q ss_pred c-ccCcc-eeeccc-------------------cccccCCcccccccccccCCCCCcEEEccCCeeeecCCCce------
Q 040144 173 A-LCNLK-SINLQE-------------------SLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF------ 225 (289)
Q Consensus 173 ~-~~~L~-~L~l~~-------------------~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~------ 225 (289)
. +..|+ .+.+.. .+.+.+.-...........|++|+.+++.+|.++...+..+
T Consensus 173 ~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L 252 (329)
T 3sb4_A 173 IEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL 252 (329)
T ss_dssp EESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred ccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence 2 33333 111100 00000000000000000125666666666665553332222
Q ss_pred -EEEeecceeeeeecccccccccccc-EEEecCCeeeeccCCCccccccccEEecccccCc
Q 040144 226 -ELHIYDNKLNVTLFELHFANLIEMS-WFRVGGNQLTLEVKHDWIPHFQLVALGLHSCYIG 284 (289)
Q Consensus 226 -~L~l~~n~~~~~~~~~~~~~~~~L~-~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~ 284 (289)
.+++.+| +. .++...|.++++|+ .+++.+ .++...+..|..|++|+.+++++|+++
T Consensus 253 ~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 253 LKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp CEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred CEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence 5666665 44 67777899999999 999998 787777789999999999999999886
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.49 E-value=5.5e-13 Score=101.46 Aligned_cols=126 Identities=24% Similarity=0.296 Sum_probs=89.8
Q ss_pred cEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCC
Q 040144 80 VELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLS 159 (289)
Q Consensus 80 ~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 159 (289)
++++++++.++.++. .+ .++++.|++++|.++ .++..+..+++|++|++++|.+++ +++..|..+++|++|+++
T Consensus 13 ~~l~~~~~~l~~ip~-~~--~~~l~~L~L~~n~i~--~ip~~~~~l~~L~~L~Ls~N~i~~-i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK-GI--PRDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRIST-LSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCSSCCS-CC--CTTCCEEECCSSCCC--SCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCCcCCC-CC--CCCCCEEECCCCcCc--hhHHHhhcccCCCEEECCCCcCCE-eCHhHccCCCCCCEEECC
Confidence 456666666665432 22 256777777777775 455667777788888888887773 435667778888888888
Q ss_pred CCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeee
Q 040144 160 LNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIV 218 (289)
Q Consensus 160 ~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 218 (289)
+|. +....+..+. +++|+.|++ ++|.++...+..+..+++|+.|++++|.+.
T Consensus 87 ~N~-l~~i~~~~f~~l~~L~~L~L------~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 87 YNR-LRCIPPRTFDGLKSLRLLSL------HGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSC-CCBCCTTTTTTCTTCCEEEC------CSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCc-cCEeCHHHhCCCCCCCEEEC------CCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 887 6655555666 777777775 777777666667888889999999988876
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.49 E-value=4e-13 Score=100.86 Aligned_cols=130 Identities=22% Similarity=0.175 Sum_probs=77.7
Q ss_pred ccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeC
Q 040144 79 LVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDL 158 (289)
Q Consensus 79 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 158 (289)
.+.+++.++.++.... ...++++.|++++|.++ ...+..+..+++|++|++++|.+. .+++..+..+++|++|++
T Consensus 9 ~~~l~~~~~~l~~~p~---~~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT---GIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCCSSCCT---TCCTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCCccCCC---CCCCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEEC
Confidence 3455555555554421 11245666666666664 333333455666666666666665 332445566666777777
Q ss_pred CCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeec
Q 040144 159 SLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGF 220 (289)
Q Consensus 159 ~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 220 (289)
++|. +.+..+..+. +++|+.|++ ++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 84 ~~N~-l~~~~~~~~~~l~~L~~L~l------~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 84 HENK-LQSLPNGVFDKLTQLKELAL------DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEEC------CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCC-ccccCHHHhhCCcccCEEEC------cCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 7666 5543344445 666666665 66666655555667788888888888877744
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.48 E-value=5.8e-13 Score=101.34 Aligned_cols=125 Identities=20% Similarity=0.178 Sum_probs=79.5
Q ss_pred cEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEEec
Q 040144 29 QFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDL 108 (289)
Q Consensus 29 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l 108 (289)
+.++++++.+..++.. + .+.|++|++++|.+...+. .+..+++|++|++++|.++...+..|..+++|+.|++
T Consensus 13 ~~l~~~~~~l~~ip~~--~--~~~l~~L~L~~n~i~~ip~---~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG--I--PRDVTELYLDGNQFTLVPK---ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTSCCSSCCSC--C--CTTCCEEECCSSCCCSCCG---GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCCCcCCCC--C--CCCCCEEECCCCcCchhHH---HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence 4566666555544421 1 2466677777776665443 5666677777777777777666666677777777777
Q ss_pred cCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCC
Q 040144 109 SHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNT 162 (289)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 162 (289)
++|.++ ...+..+..+++|++|++++|.+. .+++..|..+++|+.+++++|.
T Consensus 86 s~N~l~-~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 86 SYNRLR-CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CSSCCC-BCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCccC-EeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCC
Confidence 777765 444445666677777777777766 3434456667777777777776
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=8.4e-14 Score=104.48 Aligned_cols=130 Identities=18% Similarity=0.131 Sum_probs=75.2
Q ss_pred cCCCCCCcEEeCCCccccccCCCcccCCCC-cccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCC
Q 040144 22 LGNLSNLQFLDLSSKYLLYVDNFLWLSGIS-LLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNF 100 (289)
Q Consensus 22 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 100 (289)
+.++++|++|++++|.+..++. +..+. +|++|++++|.+... . .+..+++|++|++++|.+....+..+..+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~---~~~~~~~L~~L~Ls~N~l~~~-~---~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN---LGATLDQFDAIDFSDNEIRKL-D---GFPLLRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC---GGGGTTCCSEEECCSSCCCEE-C---CCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred cCCcCCceEEEeeCCCCchhHH---hhhcCCCCCEEECCCCCCCcc-c---ccccCCCCCEEECCCCcccccCcchhhcC
Confidence 5556667777777666554422 23333 666666666666554 2 45566666666666666665543334566
Q ss_pred CCCcEEeccCCCCCCcchhh--HhhcCCCCCEEEccCceeeeeeChh----hhcCCCCccEEeCCCCC
Q 040144 101 SSLTMLDLSHNQFDNSFILS--WVFALSHLPFLDLGFNNFQGTIDLE----ALGNLTSINRLDLSLNT 162 (289)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~----~~~~~~~L~~L~l~~n~ 162 (289)
++|+.|++++|.++ .++. .+..+++|+.|++++|.+. .. +. .+..+++|+.++++.|.
T Consensus 88 ~~L~~L~L~~N~i~--~~~~~~~l~~l~~L~~L~l~~N~i~-~~-~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 88 PDLTELILTNNSLV--ELGDLDPLASLKSLTYLCILRNPVT-NK-KHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TTCCEEECCSCCCC--CGGGGGGGGGCTTCCEEECCSSGGG-GS-TTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCEEECCCCcCC--cchhhHhhhcCCCCCEEEecCCCCC-Cc-HhHHHHHHHHCCccceeCCCcCC
Confidence 66666666666664 2332 4555666666666666665 33 22 35566666666666654
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=5.1e-13 Score=100.17 Aligned_cols=130 Identities=19% Similarity=0.175 Sum_probs=106.3
Q ss_pred CCCCcEEEccCCcccccCCCccCCCC-CCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCc
Q 040144 1 MGNLRYLNFSKTRICGIIPQQLGNLS-NLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSL 79 (289)
Q Consensus 1 ~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 79 (289)
+++|++|++++|.++. ++. +..+. +|++|++++|.+.... .+..+++|++|++++|.+...++ ..+..+++|
T Consensus 18 ~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~~---~l~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L 90 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKLD---GFPLLRRLKTLLVNNNRICRIGE--GLDQALPDL 90 (176)
T ss_dssp TTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEEC---CCCCCSSCCEEECCSSCCCEECS--CHHHHCTTC
T ss_pred cCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCccc---ccccCCCCCEEECCCCcccccCc--chhhcCCCC
Confidence 3679999999999984 454 55554 9999999999877662 37889999999999999987653 135789999
Q ss_pred cEEEccCCccCCCCc-ccccCCCCCcEEeccCCCCCCcchhh----HhhcCCCCCEEEccCceee
Q 040144 80 VELRLSNCQLQHFSP-LATVNFSSLTMLDLSHNQFDNSFILS----WVFALSHLPFLDLGFNNFQ 139 (289)
Q Consensus 80 ~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~L~~L~l~~n~~~ 139 (289)
++|++++|.+..... ..+..+++|+.|++++|.++ ..+. .+..+++|+.|++++|...
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~--~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT--NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG--GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC--CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999999977543 36788999999999999985 3444 3788999999999999765
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=2.3e-15 Score=115.32 Aligned_cols=133 Identities=22% Similarity=0.207 Sum_probs=81.8
Q ss_pred hhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccc
Q 040144 119 LSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHL 197 (289)
Q Consensus 119 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~ 197 (289)
+..+..+++|++|++++|.+.+ + + .+..+++|++|++++|. +. .+|..+. +++|+.|++ ++|.+++ +
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~-l-~-~~~~l~~L~~L~l~~n~-l~-~l~~~~~~~~~L~~L~L------~~N~l~~-l 108 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEK-I-S-SLSGMENLRILSLGRNL-IK-KIENLDAVADTLEELWI------SYNQIAS-L 108 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESC-C-C-CHHHHTTCCEEEEEEEE-EC-SCSSHHHHHHHCSEEEE------EEEECCC-H
T ss_pred hHHHhcCCCCCEEECCCCCCcc-c-c-ccccCCCCCEEECCCCC-cc-cccchhhcCCcCCEEEC------cCCcCCc-C
Confidence 3356666677777777766653 4 3 56666677777777666 44 4555555 566666665 5566654 2
Q ss_pred cccccCCCCCcEEEccCCeeeecCCCceEEEeecceeeeeecc-ccccccccccEEEecCCeeeeccCCC----------
Q 040144 198 TDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFE-LHFANLIEMSWFRVGGNQLTLEVKHD---------- 266 (289)
Q Consensus 198 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~---------- 266 (289)
| .+..+++|+.|++++|.++ .++. ..+..+++|+.|++++|++.+..|..
T Consensus 109 ~-~~~~l~~L~~L~l~~N~i~------------------~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 109 S-GIEKLVNLRVLYMSNNKIT------------------NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp H-HHHHHHHSSEEEESEEECC------------------CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred C-ccccCCCCCEEECCCCcCC------------------chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence 3 4566667777777766655 2221 24667777777777777776654442
Q ss_pred ccccccccEEecccccCc
Q 040144 267 WIPHFQLVALGLHSCYIG 284 (289)
Q Consensus 267 ~~~~~~L~~l~l~~n~~~ 284 (289)
+..+++|+.|| ++.++
T Consensus 170 ~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 170 VKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHCSSCSEEC--CGGGT
T ss_pred HHhCCCcEEEC--CcccC
Confidence 56677777776 55554
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=1.7e-15 Score=115.97 Aligned_cols=128 Identities=24% Similarity=0.225 Sum_probs=68.0
Q ss_pred CcEEEccCCcccccCCC------ccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCC
Q 040144 4 LRYLNFSKTRICGIIPQ------QLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLL 77 (289)
Q Consensus 4 L~~L~l~~~~~~~~~~~------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 77 (289)
++.+++..+.+++..|. .+..+++|++|++++|.+..++ .+..+++|++|++++|.+...+. .+..++
T Consensus 20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~---~~~~l~~L~~L~l~~n~l~~l~~---~~~~~~ 93 (198)
T 1ds9_A 20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS---SLSGMENLRILSLGRNLIKKIEN---LDAVAD 93 (198)
T ss_dssp CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC---CHHHHTTCCEEEEEEEEECSCSS---HHHHHH
T ss_pred ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc---ccccCCCCCEEECCCCCcccccc---hhhcCC
Confidence 34444444555444444 5566666666666666554433 24556666666666666554433 334445
Q ss_pred CccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceee
Q 040144 78 SLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQ 139 (289)
Q Consensus 78 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 139 (289)
+|++|++++|.+... + .+..+++|+.|++++|.++.......+..+++|++|++++|.+.
T Consensus 94 ~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 94 TLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred cCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 666666666655543 1 34555566666666665541111123455556666666666554
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=1.8e-14 Score=120.82 Aligned_cols=186 Identities=18% Similarity=0.152 Sum_probs=105.7
Q ss_pred CCCccEEEccCCccCCCCccccc-----CCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhh---
Q 040144 76 LLSLVELRLSNCQLQHFSPLATV-----NFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEAL--- 147 (289)
Q Consensus 76 ~~~L~~L~l~~~~l~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--- 147 (289)
++.|++|++++|.++......+. ..++|+.|++++|.+++.........+.+|++|++++|.+.... ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~-~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEA-CKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHH-HHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHH-HHHHHHH
Confidence 35677888888777653222222 22577788888887763223333334567788888888775322 2222
Q ss_pred --cCCCCccEEeCCCCCcccCC----CCcccc-ccCcceeeccccccccCCccccc----ccccccCCCCCcEEEccCCe
Q 040144 148 --GNLTSINRLDLSLNTGLTGR----IPRSMA-LCNLKSINLQESLDMRSSSIYGH----LTDQLGQFRNLVTFNLVNNS 216 (289)
Q Consensus 148 --~~~~~L~~L~l~~n~~~~~~----~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~ 216 (289)
...++|++|++++|. +.+. ++..+. .++|++|++ ++|.++.. ++..+..+++|+.|++++|.
T Consensus 150 L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~L------s~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSL------LHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEEC------TTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeC------CCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 235678888888777 5432 222233 556666665 66666543 24456667788888888887
Q ss_pred eeecCCCceEEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCcccc---c--cccEEe--cccccC
Q 040144 217 IVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPH---F--QLVALG--LHSCYI 283 (289)
Q Consensus 217 ~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~---~--~L~~l~--l~~n~~ 283 (289)
+++... ..++. .+..+++|++|++++|.+++.....+... . .++.+. +.++.+
T Consensus 223 i~~~g~-------------~~l~~-~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 223 AGDTAA-------------LALAR-AAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp CCHHHH-------------HHHHH-HHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred CCHHHH-------------HHHHH-HHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence 763311 12333 45566788888888888876544433222 1 155555 555544
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.32 E-value=9.9e-12 Score=92.50 Aligned_cols=105 Identities=16% Similarity=0.179 Sum_probs=63.0
Q ss_pred CCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCC
Q 040144 128 LPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRN 206 (289)
Q Consensus 128 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~ 206 (289)
.+.++++++.+. .+ |..+ .+++++|++++|. +.+..|..+. +++|+.|++ ++|.+++..+..+..+++
T Consensus 11 ~~~l~~s~n~l~-~i-p~~~--~~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L------s~N~l~~l~~~~f~~l~~ 79 (170)
T 3g39_A 11 GTTVDCSGKSLA-SV-PTGI--PTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDL------DNNQLTVLPAGVFDKLTQ 79 (170)
T ss_dssp TTEEECTTSCCS-SC-CSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEEC------CSSCCCCCCTTTTTTCTT
T ss_pred CCEEEeCCCCcC-cc-CccC--CCCCcEEEcCCCc-CCccChhhhcCcccCCEEEC------CCCCcCccChhhccCCCC
Confidence 456666666665 34 3333 2566677777666 5544455555 666666664 666666555555666666
Q ss_pred CcEEEccCCeeeecCCCceEEEeecceeeeeeccccccccccccEEEecCCeeee
Q 040144 207 LVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTL 261 (289)
Q Consensus 207 L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 261 (289)
|+.|++++|.++ .++...+.++++|+.|++++|++..
T Consensus 80 L~~L~L~~N~l~------------------~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 80 LTQLSLNDNQLK------------------SIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCEEECCSSCCC------------------CCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCEEECCCCccC------------------EeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 666666666655 2333246666777777777776654
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=1.1e-13 Score=115.97 Aligned_cols=110 Identities=16% Similarity=0.130 Sum_probs=50.9
Q ss_pred CcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccc-----cCCCCCcEEeccCCCCCCcc---hhhHh
Q 040144 51 SLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLAT-----VNFSSLTMLDLSHNQFDNSF---ILSWV 122 (289)
Q Consensus 51 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~---~~~~~ 122 (289)
..|++|++++|.+..... ......+++|++|++++|.++......+ ...++|+.|++++|.+++.. +...+
T Consensus 101 ~~L~~L~Ls~n~l~~~~~-~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGL-RTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SCEEEEECTTCCCCHHHH-HHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHH-HHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 455566665555443210 0111223355566666665544322222 12455666666666554111 12223
Q ss_pred hcCCCCCEEEccCceeeee----eChhhhcCCCCccEEeCCCCC
Q 040144 123 FALSHLPFLDLGFNNFQGT----IDLEALGNLTSINRLDLSLNT 162 (289)
Q Consensus 123 ~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~ 162 (289)
...++|++|++++|.+.+. + ...+...++|++|++++|.
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L-~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELL-AAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHH-HHHGGGCSCCCEEECCSSC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHH-HHHHhcCCCcCeEECCCCC
Confidence 4455566666666655421 1 2334445556666666665
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=1.5e-11 Score=91.87 Aligned_cols=105 Identities=18% Similarity=0.228 Sum_probs=66.9
Q ss_pred CCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCC
Q 040144 128 LPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRN 206 (289)
Q Consensus 128 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~ 206 (289)
-+.++++++.+. .+ |..+. ++|++|++++|. +.+..|..+. +++|+.|++ ++|.+++..+..+..+++
T Consensus 14 ~~~l~~~~n~l~-~i-P~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L------s~N~l~~i~~~~~~~l~~ 82 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SV-PAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYF------NSNKLTAIPTGVFDKLTQ 82 (174)
T ss_dssp SSEEECCSSCCS-SC-CSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC------CSSCCCCCCTTTTTTCTT
T ss_pred CcEEEeCCCCCC-cc-CCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEEC------CCCCCCccChhHhCCcch
Confidence 356677777665 45 44332 567777777777 5555555566 666776665 666676655555666777
Q ss_pred CcEEEccCCeeeecCCCceEEEeecceeeeeeccccccccccccEEEecCCeeee
Q 040144 207 LVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTL 261 (289)
Q Consensus 207 L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 261 (289)
|+.|++++|.++ .++...+.++++|+.|++++|++..
T Consensus 83 L~~L~L~~N~l~------------------~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 83 LTQLDLNDNHLK------------------SIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCEEECCSSCCC------------------CCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred hhEEECCCCccc------------------eeCHHHhccccCCCEEEeCCCCccc
Confidence 777777766665 3333246677777777777777764
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.23 E-value=4.8e-11 Score=88.75 Aligned_cols=103 Identities=24% Similarity=0.191 Sum_probs=57.3
Q ss_pred ccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEE
Q 040144 53 LEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLD 132 (289)
Q Consensus 53 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 132 (289)
.+.++++++.+...+. .+ .+.+++|++++|.++...+..+..+++|+.|++++|.++ ...+..+..+++|++|+
T Consensus 11 ~~~l~~s~n~l~~ip~---~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 11 GTTVDCSGKSLASVPT---GI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp TTEEECTTSCCSSCCS---CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCEEEeCCCCcCccCc---cC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEE
Confidence 3455555555544432 11 245666666666666555555566666666666666665 33333345566666666
Q ss_pred ccCceeeeeeChhhhcCCCCccEEeCCCCC
Q 040144 133 LGFNNFQGTIDLEALGNLTSINRLDLSLNT 162 (289)
Q Consensus 133 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 162 (289)
+++|.+. .+++..+..+++|++|++++|.
T Consensus 85 L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 85 LNDNQLK-SIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccC-EeCHHHhcCCCCCCEEEeCCCC
Confidence 6666665 3324456666666666666665
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.20 E-value=9.1e-11 Score=87.56 Aligned_cols=102 Identities=22% Similarity=0.217 Sum_probs=55.7
Q ss_pred cEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEc
Q 040144 54 EHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDL 133 (289)
Q Consensus 54 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 133 (289)
+.++++++.+...+. .+ .++|++|++++|.+....+..+..+++|+.|++++|.++ ...+..+..+++|++|++
T Consensus 15 ~~l~~~~n~l~~iP~---~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 15 TLVNCQNIRLASVPA---GI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SEEECCSSCCSSCCS---CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred cEEEeCCCCCCccCC---Cc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEEC
Confidence 345555555444332 11 145666666666666555555566666666666666664 222223445666666666
Q ss_pred cCceeeeeeChhhhcCCCCccEEeCCCCC
Q 040144 134 GFNNFQGTIDLEALGNLTSINRLDLSLNT 162 (289)
Q Consensus 134 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 162 (289)
++|.+. .+++..+..+++|+.|++++|.
T Consensus 89 ~~N~l~-~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 89 NDNHLK-SIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CSSCCC-CCCTTTTTTCTTCSEEECCSSC
T ss_pred CCCccc-eeCHHHhccccCCCEEEeCCCC
Confidence 666665 3323446666666666666665
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.17 E-value=6.8e-10 Score=93.92 Aligned_cols=260 Identities=11% Similarity=0.037 Sum_probs=134.4
Q ss_pred CCCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCc------------ccccc--
Q 040144 1 MGNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYV------------NLSIA-- 66 (289)
Q Consensus 1 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~------------~~~~~-- 66 (289)
|.+|+++.|.. .++.....+|.++++|+.+++.++ ...++... +.++..|+.+.+..+ .....
T Consensus 70 c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a-F~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~ 146 (394)
T 4fs7_A 70 CRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCT-FSGCYALKSILLPLMLKSIGVEAFKGCDFKEITI 146 (394)
T ss_dssp CTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTT-TTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEEC
T ss_pred CCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchh-hcccccchhhcccCceeeecceeeeccccccccc
Confidence 46788888874 366566788999999999999753 33333222 556666655543322 11000
Q ss_pred ch-----hhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeee-
Q 040144 67 FD-----WLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQG- 140 (289)
Q Consensus 67 ~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~- 140 (289)
+. -...+..+.+|+.+.+..+. ..+....|.++.+|+.+.+..+ ++ ......+..+..|+.+.+..+....
T Consensus 147 ~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~i~ 223 (394)
T 4fs7_A 147 PEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYYLG 223 (394)
T ss_dssp CTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCEEC
T ss_pred CccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceEee
Confidence 00 01245677888888887543 3344556777777877777654 22 1222233444445444443332110
Q ss_pred -------------------eeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCccccccccc
Q 040144 141 -------------------TIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQ 200 (289)
Q Consensus 141 -------------------~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~ 200 (289)
.+...++..+..++.+.+..+. .......+. +..++...+. ... .....
T Consensus 224 ~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~--~~i~~~~F~~~~~l~~~~~~------~~~---i~~~~ 292 (394)
T 4fs7_A 224 DFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNK--LRIGGSLFYNCSGLKKVIYG------SVI---VPEKT 292 (394)
T ss_dssp TTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTT--CEECSCTTTTCTTCCEEEEC------SSE---ECTTT
T ss_pred hhhcccCCCceEEECCCceecccccccccccceeEEcCCCc--ceeeccccccccccceeccC------cee---ecccc
Confidence 1112334444555555554332 111111222 3333333221 100 11223
Q ss_pred ccCCCCCcEEEccCCeeeecCCCce-------EEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCccccccc
Q 040144 201 LGQFRNLVTFNLVNNSIVGFIPWSF-------ELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQL 273 (289)
Q Consensus 201 l~~~~~L~~L~l~~n~~~~~~~~~~-------~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L 273 (289)
+..+.+|+.+.+..+ +.......+ .+++.++ ++ .+...+|.+|++|+.+.+..+ ++.....+|..|++|
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 445555555555433 211111111 3444322 33 566667888888998888766 665566778888888
Q ss_pred cEEecccc
Q 040144 274 VALGLHSC 281 (289)
Q Consensus 274 ~~l~l~~n 281 (289)
+.+++..+
T Consensus 369 ~~i~lp~~ 376 (394)
T 4fs7_A 369 KKVELPKR 376 (394)
T ss_dssp CEEEEEGG
T ss_pred CEEEECCC
Confidence 88888654
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.15 E-value=4.3e-09 Score=88.97 Aligned_cols=101 Identities=11% Similarity=0.035 Sum_probs=50.1
Q ss_pred CcEEEccCCcccccCCCccCCCCCCcEEeCCCcc---ccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCcc
Q 040144 4 LRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKY---LLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLV 80 (289)
Q Consensus 4 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~---~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 80 (289)
|+++.+... ++.....+|.++.+|+.+.+..+. +..++... +.++..|+.+.+..+ +..... ..+..+..|+
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~a-F~~c~~L~~i~~~~~-~~~I~~--~aF~~c~~L~ 140 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQA-FMFCSELTDIPILDS-VTEIDS--EAFHHCEELD 140 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTT-TTTCTTCCBCGGGTT-CSEECT--TTTTTCTTCC
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhh-chhcccceeeccCCc-cceehh--hhhhhhcccc
Confidence 566666532 444455667777777777765432 22233222 455666665555433 111111 1345566666
Q ss_pred EEEccCCccCCCCcccccCCCCCcEEeccC
Q 040144 81 ELRLSNCQLQHFSPLATVNFSSLTMLDLSH 110 (289)
Q Consensus 81 ~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 110 (289)
.+.+... +..+....+..+..|+.+.+..
T Consensus 141 ~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 141 TVTIPEG-VTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEECCT
T ss_pred cccccce-eeeecccceecccccccccccc
Confidence 6666532 2223334445555555555543
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.12 E-value=4.5e-09 Score=88.87 Aligned_cols=251 Identities=11% Similarity=0.049 Sum_probs=133.6
Q ss_pred ccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCC--
Q 040144 14 ICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQH-- 91 (289)
Q Consensus 14 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-- 91 (289)
++.....+|.++.+|+++.+.. .+..++... +.+|.+|+.+++..+ +..... ..+..+..|+.+.+..+ +..
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~a-F~~c~~L~~i~lp~~-l~~I~~--~aF~~c~~L~~i~~p~~-l~~i~ 132 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFA-FENCSKLEIINIPDS-VKMIGR--CTFSGCYALKSILLPLM-LKSIG 132 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTT-TTTCTTCCEECCCTT-CCEECT--TTTTTCTTCCCCCCCTT-CCEEC
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhH-hhCCCCCcEEEeCCC-ceEccc--hhhcccccchhhcccCc-eeeec
Confidence 5566778899999999999975 345555444 789999999999755 333221 14566666666555432 111
Q ss_pred --------------------CCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCC
Q 040144 92 --------------------FSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLT 151 (289)
Q Consensus 92 --------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 151 (289)
.....|..+.+|+.+.+..+.. ......+..+.+|+.+.+..+ +. .+...+|..+.
T Consensus 133 ~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~ 208 (394)
T 4fs7_A 133 VEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECI 208 (394)
T ss_dssp TTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCT
T ss_pred ceeeecccccccccCccccccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ce-EeCchhhcccc
Confidence 1223345556666666654322 122233445566666666544 22 23244555555
Q ss_pred CccEEeCCCCCcccCCCCcccc-ccCcceeeccccc-----------------cccCCcccccccccccCCCCCcEEEcc
Q 040144 152 SINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESL-----------------DMRSSSIYGHLTDQLGQFRNLVTFNLV 213 (289)
Q Consensus 152 ~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l-----------------~l~~~~~~~~~~~~l~~~~~L~~L~l~ 213 (289)
.|+.+.+..+. . ....... ...|+.+.+...+ .+..+ ........+..+..++.+...
T Consensus 209 ~L~~i~~~~~~-~--~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~ 284 (394)
T 4fs7_A 209 LLENMEFPNSL-Y--YLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYG 284 (394)
T ss_dssp TCCBCCCCTTC-C--EECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEEC
T ss_pred ccceeecCCCc-e--EeehhhcccCCCceEEECCCceecccccccccccceeEEcCCC-cceeeccccccccccceeccC
Confidence 55555554432 1 1111111 3344444332100 00000 111122233444444444444
Q ss_pred CCeeeecC----CCceEEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCccccccccEEecccc
Q 040144 214 NNSIVGFI----PWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSC 281 (289)
Q Consensus 214 ~n~~~~~~----~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 281 (289)
...+.... .....+.+.++ +. .++...|.+|++|+.+++.++ ++.....+|..|++|+.+++..+
T Consensus 285 ~~~i~~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 285 SVIVPEKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp SSEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred ceeeccccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 33322110 00014555443 43 566667888999999999754 66555678889999999988765
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.00 E-value=1.5e-09 Score=90.24 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=60.2
Q ss_pred EEEccCc-eeeeeeChhhhcCCCCccEEeCCC-CCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCC
Q 040144 130 FLDLGFN-NFQGTIDLEALGNLTSINRLDLSL-NTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRN 206 (289)
Q Consensus 130 ~L~l~~n-~~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~ 206 (289)
.++.+++ .++ .+ |. +..+++|+.|+|++ |. +....+..+. +++|+.|++ ++|.+++..+..|..+++
T Consensus 12 ~v~~~~~n~l~-~i-p~-l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l------~~N~l~~~~~~~~~~l~~ 81 (347)
T 2ifg_A 12 GLRCTRDGALD-SL-HH-LPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTI------VKSGLRFVAPDAFHFTPR 81 (347)
T ss_dssp CEECCSSCCCT-TT-TT-SCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEEC------CSSCCCEECTTGGGSCSC
T ss_pred EEEcCCCCCCC-cc-CC-CCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEEC------CCCccceeCHHHhcCCcC
Confidence 3455555 555 45 44 66666777777764 65 5443344555 666666664 666666666666666666
Q ss_pred CcEEEccCCeeeecCCCceEEEeecceeeeeeccccccccccccEEEecCCeeee
Q 040144 207 LVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTL 261 (289)
Q Consensus 207 L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 261 (289)
|+.|+|++|.++ .+|...+..++ |+.|++.+|++..
T Consensus 82 L~~L~l~~N~l~------------------~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 82 LSRLNLSFNALE------------------SLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCEEECCSSCCS------------------CCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCEEeCCCCccc------------------eeCHHHcccCC-ceEEEeeCCCccC
Confidence 666666666665 23321333333 7777777776653
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.98 E-value=1.9e-08 Score=84.97 Aligned_cols=255 Identities=13% Similarity=0.101 Sum_probs=117.3
Q ss_pred CCCCcEEEccCCc---ccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCC
Q 040144 1 MGNLRYLNFSKTR---ICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLL 77 (289)
Q Consensus 1 ~~~L~~L~l~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 77 (289)
|.+|+++.+..+. ++.....+|..+..|+.+.+..+ ...++... +..+..|+.+.+.......... .+..+.
T Consensus 86 C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a-F~~c~~L~~i~lp~~~~~I~~~---~F~~c~ 160 (394)
T 4gt6_A 86 CTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA-FHHCEELDTVTIPEGVTSVADG---MFSYCY 160 (394)
T ss_dssp CTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT-TTTCTTCCEEECCTTCCEECTT---TTTTCT
T ss_pred CccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh-hhhhcccccccccceeeeeccc---ceeccc
Confidence 4678888887652 55555677888888887776542 23333222 5667777777775432111111 445556
Q ss_pred CccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCC-------------------------------
Q 040144 78 SLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALS------------------------------- 126 (289)
Q Consensus 78 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~------------------------------- 126 (289)
.|+.+.+..+ +..+....|.. ..|+.+.+..+... .....+..+.
T Consensus 161 ~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~--i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (394)
T 4gt6_A 161 SLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR--IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALI 236 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE--ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEE
T ss_pred ccccccccce-eeEeccccccc-cceeEEEECCcccc--cccchhhhccccceecccccccccccceeeccccccccccc
Confidence 6666666543 22222222221 23444443322110 0011111111
Q ss_pred ------CCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccc
Q 040144 127 ------HLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTD 199 (289)
Q Consensus 127 ------~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~ 199 (289)
.+..+.+... +. .+...+|..+..|+.+.+..+. .......+. +..|+.+.+ .+.+......
T Consensus 237 ~~~~~~~~~~~~ip~~-v~-~i~~~aF~~c~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l-------~~~i~~I~~~ 305 (394)
T 4gt6_A 237 RYPSQREDPAFKIPNG-VA-RIETHAFDSCAYLASVKMPDSV--VSIGTGAFMNCPALQDIEF-------SSRITELPES 305 (394)
T ss_dssp ECCTTCCCSEEECCTT-EE-EECTTTTTTCSSCCEEECCTTC--CEECTTTTTTCTTCCEEEC-------CTTCCEECTT
T ss_pred ccccccccceEEcCCc-ce-EcccceeeecccccEEeccccc--ceecCcccccccccccccC-------CCcccccCce
Confidence 2222332221 22 2224567777777777775543 222233444 677777765 2334444455
Q ss_pred cccCCCCCcEEEccCCeeeecCCCce-------EEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCcccccc
Q 040144 200 QLGQFRNLVTFNLVNNSIVGFIPWSF-------ELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQ 272 (289)
Q Consensus 200 ~l~~~~~L~~L~l~~n~~~~~~~~~~-------~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~ 272 (289)
+|.+|.+|+.+.+..+ ++......+ .+.+-.+ ++ .+...+|.+|++|+.+++.++.... ..+..+.+
T Consensus 306 aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~ 379 (394)
T 4gt6_A 306 VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSG 379 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCC
T ss_pred eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCC
Confidence 6777777777777543 221111111 2222221 22 3444455566666666666554321 23444555
Q ss_pred ccEEecccc
Q 040144 273 LVALGLHSC 281 (289)
Q Consensus 273 L~~l~l~~n 281 (289)
|+.+.+..+
T Consensus 380 L~~i~i~~~ 388 (394)
T 4gt6_A 380 LQNLPVAPG 388 (394)
T ss_dssp C--------
T ss_pred CCEEEeCCC
Confidence 555555544
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.92 E-value=2.9e-10 Score=94.61 Aligned_cols=39 Identities=10% Similarity=0.192 Sum_probs=19.3
Q ss_pred ccccccccEEEecCCeeeeccCCCccccccccEEeccccc
Q 040144 243 FANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCY 282 (289)
Q Consensus 243 ~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~ 282 (289)
+.++++|+.|++++|.+++.....+...- -..++++.++
T Consensus 303 L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 303 VDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp HHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred cccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence 34566666666666666654333332210 2345555543
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.90 E-value=5.9e-09 Score=86.57 Aligned_cols=104 Identities=18% Similarity=0.173 Sum_probs=76.1
Q ss_pred cEEEccCC-ccCCCCcccccCCCCCcEEeccC-CCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEe
Q 040144 80 VELRLSNC-QLQHFSPLATVNFSSLTMLDLSH-NQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLD 157 (289)
Q Consensus 80 ~~L~l~~~-~l~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 157 (289)
..++.+++ .++.+ |. +..+.+|+.|++++ |.++ ...+..+..+++|++|++++|.+.+.. +..|..+++|+.|+
T Consensus 11 ~~v~~~~~n~l~~i-p~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 11 SGLRCTRDGALDSL-HH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLN 86 (347)
T ss_dssp SCEECCSSCCCTTT-TT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEE
T ss_pred CEEEcCCCCCCCcc-CC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeC-HHHhcCCcCCCEEe
Confidence 34577776 77765 44 78888899999986 8886 544566788899999999999888544 77888999999999
Q ss_pred CCCCCcccCCCCccccccCcceeeccccccccCCccc
Q 040144 158 LSLNTGLTGRIPRSMALCNLKSINLQESLDMRSSSIY 194 (289)
Q Consensus 158 l~~n~~~~~~~~~~~~~~~L~~L~l~~~l~l~~~~~~ 194 (289)
|++|. +....+..+....|+.|++ .+|.+.
T Consensus 87 l~~N~-l~~~~~~~~~~~~L~~l~l------~~N~~~ 116 (347)
T 2ifg_A 87 LSFNA-LESLSWKTVQGLSLQELVL------SGNPLH 116 (347)
T ss_dssp CCSSC-CSCCCSTTTCSCCCCEEEC------CSSCCC
T ss_pred CCCCc-cceeCHHHcccCCceEEEe------eCCCcc
Confidence 99998 6643333444223777775 666665
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.80 E-value=8.1e-09 Score=85.88 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=16.6
Q ss_pred CCCCCEEEccCceeeeeeChhhhc---CCCCccEEeCCCCC
Q 040144 125 LSHLPFLDLGFNNFQGTIDLEALG---NLTSINRLDLSLNT 162 (289)
Q Consensus 125 ~~~L~~L~l~~n~~~~~~~~~~~~---~~~~L~~L~l~~n~ 162 (289)
+++|+.|++.+|.+.... +..+. .+++|++|+++.|.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~-~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVV-VEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp CTTCCEEEEESCTTHHHH-HHHHHHCSSGGGCSEEECCSSC
T ss_pred CCCcCEEeCCCCCCchHH-HHHHHhCccCCCCCEEECCCCC
Confidence 445555555555443211 11111 24455555555554
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.75 E-value=1.6e-06 Score=72.81 Aligned_cols=53 Identities=9% Similarity=0.087 Sum_probs=33.7
Q ss_pred CCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEecc
Q 040144 3 NLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLR 59 (289)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 59 (289)
+|+++.+.. .++.....+|.+|.+|+++.+..+ +..++... +.++ .|+.+.+.
T Consensus 47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~a-F~~c-~l~~i~~~ 99 (379)
T 4h09_A 47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGA-FADT-KLQSYTGM 99 (379)
T ss_dssp GCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTT-TTTC-CCCEEEEC
T ss_pred CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhh-hcCC-CCceEECC
Confidence 567777754 355556678999999999998653 34444333 4555 46666554
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.58 E-value=3.5e-08 Score=74.17 Aligned_cols=115 Identities=11% Similarity=0.076 Sum_probs=65.8
Q ss_pred cCCCCcccEEeccCc-ccccc--chhhHhhhcCCCccEEEccCCccCCCCc----ccccCCCCCcEEeccCCCCCCcc--
Q 040144 47 LSGISLLEHLDLRYV-NLSIA--FDWLMVANKLLSLVELRLSNCQLQHFSP----LATVNFSSLTMLDLSHNQFDNSF-- 117 (289)
Q Consensus 47 ~~~l~~L~~L~l~~~-~~~~~--~~~~~~~~~~~~L~~L~l~~~~l~~~~~----~~l~~~~~L~~L~l~~~~~~~~~-- 117 (289)
+...+.|++|++++| .+... ..+...+...++|++|++++|.+..... ..+...++|++|++++|.+++..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344566667777666 55443 2233345556667777777776654322 22334466777777777776322
Q ss_pred -hhhHhhcCCCCCEEEc--cCceeeee----eChhhhcCCCCccEEeCCCCC
Q 040144 118 -ILSWVFALSHLPFLDL--GFNNFQGT----IDLEALGNLTSINRLDLSLNT 162 (289)
Q Consensus 118 -~~~~~~~~~~L~~L~l--~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~ 162 (289)
+...+...+.|++|++ ++|.+... + ...+...+.|++|++++|.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l-~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEI-ANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH-HHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHH-HHHHHhCCCcCEEeccCCC
Confidence 2233444566777777 66766532 2 2344455677777777776
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.57 E-value=3.9e-08 Score=73.94 Aligned_cols=117 Identities=13% Similarity=0.038 Sum_probs=50.9
Q ss_pred cCCCCCCcEEeCCCc-cccccCC---CcccCCCCcccEEeccCcccccc--chhhHhhhcCCCccEEEccCCccCCCC--
Q 040144 22 LGNLSNLQFLDLSSK-YLLYVDN---FLWLSGISLLEHLDLRYVNLSIA--FDWLMVANKLLSLVELRLSNCQLQHFS-- 93 (289)
Q Consensus 22 l~~l~~L~~L~l~~~-~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~l~~~~-- 93 (289)
+...+.|++|++++| .+...+. ...+...+.|++|++++|.+... ..+...+...+.|++|++++|.++...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344455555555555 3322111 01123344555555555554432 122223344455555555555554321
Q ss_pred --cccccCCCCCcEEec--cCCCCCCcc---hhhHhhcCCCCCEEEccCcee
Q 040144 94 --PLATVNFSSLTMLDL--SHNQFDNSF---ILSWVFALSHLPFLDLGFNNF 138 (289)
Q Consensus 94 --~~~l~~~~~L~~L~l--~~~~~~~~~---~~~~~~~~~~L~~L~l~~n~~ 138 (289)
...+...++|++|++ ++|.+++.. +...+...+.|++|++++|.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 122334445555555 445554211 122233344555555555544
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.44 E-value=4.2e-05 Score=64.01 Aligned_cols=83 Identities=12% Similarity=0.031 Sum_probs=52.2
Q ss_pred cccccccCCCCCcEEEccCCeeeecCCCce-------EEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCcc
Q 040144 196 HLTDQLGQFRNLVTFNLVNNSIVGFIPWSF-------ELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWI 268 (289)
Q Consensus 196 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~-------~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 268 (289)
....++.++.+|+.+.+..+ +.......+ .+.+.++.+. .++...|.+|.+|+.+.+..+ ++.....+|.
T Consensus 254 I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~ 330 (379)
T 4h09_A 254 IGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFK 330 (379)
T ss_dssp ECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred eCccccceeehhcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhh
Confidence 33455667777777777543 221111111 6677766666 566667888888888888754 5555556778
Q ss_pred ccccccEEecccc
Q 040144 269 PHFQLVALGLHSC 281 (289)
Q Consensus 269 ~~~~L~~l~l~~n 281 (289)
.|++|+.+.+..+
T Consensus 331 ~C~~L~~i~ip~~ 343 (379)
T 4h09_A 331 NCKALSTISYPKS 343 (379)
T ss_dssp TCTTCCCCCCCTT
T ss_pred CCCCCCEEEECCc
Confidence 8888887777543
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.40 E-value=1.2e-07 Score=69.78 Aligned_cols=89 Identities=18% Similarity=0.229 Sum_probs=65.9
Q ss_pred CCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcC----CCccEEEccCCc-cCCCCcccccC
Q 040144 25 LSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKL----LSLVELRLSNCQ-LQHFSPLATVN 99 (289)
Q Consensus 25 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~-l~~~~~~~l~~ 99 (289)
-..|++|++++|.+...+. ..+.++++|++|++++|....+.. ...+..+ ++|++|++++|. +++.....+..
T Consensus 60 ~~~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~g-L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~ 137 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGC-LERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH 137 (176)
T ss_dssp CCCEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHH-HHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred CceEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHH-HHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence 3479999999998655543 336789999999999996433321 1244443 579999999985 77765666788
Q ss_pred CCCCcEEeccCCC-CCC
Q 040144 100 FSSLTMLDLSHNQ-FDN 115 (289)
Q Consensus 100 ~~~L~~L~l~~~~-~~~ 115 (289)
+++|+.|++++|. +++
T Consensus 138 ~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CTTCCEEEEESCTTCCC
T ss_pred CCCCCEEECCCCCCCCc
Confidence 9999999999985 653
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.26 E-value=7.2e-07 Score=65.68 Aligned_cols=83 Identities=8% Similarity=0.062 Sum_probs=38.7
Q ss_pred CccEEEccCCccCCCCcccccCCCCCcEEeccCCC-CCCcchhhHhhcC----CCCCEEEccCce-eeeeeChhhhcCCC
Q 040144 78 SLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQ-FDNSFILSWVFAL----SHLPFLDLGFNN-FQGTIDLEALGNLT 151 (289)
Q Consensus 78 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~----~~L~~L~l~~n~-~~~~~~~~~~~~~~ 151 (289)
.|++|++++|.++......+..+++|+.|++++|. ++|..+ ..+..+ ++|++|++++|. ++..- ...+..++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-l~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDKG-IIALHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHHH-HHHGGGCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHHH-HHHHhcCC
Confidence 45555555555444433444455555555555552 442222 222222 245555555553 44222 23444555
Q ss_pred CccEEeCCCCC
Q 040144 152 SINRLDLSLNT 162 (289)
Q Consensus 152 ~L~~L~l~~n~ 162 (289)
+|++|+++++.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 55555555554
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.23 E-value=9.6e-07 Score=69.86 Aligned_cols=81 Identities=23% Similarity=0.272 Sum_probs=41.8
Q ss_pred CCCCCcEEeccCCCCCCc-chhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCc-------
Q 040144 99 NFSSLTMLDLSHNQFDNS-FILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPR------- 170 (289)
Q Consensus 99 ~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~------- 170 (289)
.+++|+.|++++|.++.- .++..+..+++|+.|++++|.+.+......+..+ +|++|++++|. +.+..|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Np-l~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNS-LCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTST-TGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCc-CccccCcchhHHHH
Confidence 345566666666655410 2233445566666666666666532111222223 66677777666 5544431
Q ss_pred ccc-ccCcceee
Q 040144 171 SMA-LCNLKSIN 181 (289)
Q Consensus 171 ~~~-~~~L~~L~ 181 (289)
.+. +|+|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 234 66666664
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.13 E-value=2.3e-06 Score=67.67 Aligned_cols=84 Identities=26% Similarity=0.214 Sum_probs=54.2
Q ss_pred CCCCCCcEEeCCCccccccCCC-cccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCc-------
Q 040144 23 GNLSNLQFLDLSSKYLLYVDNF-LWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSP------- 94 (289)
Q Consensus 23 ~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~------- 94 (289)
.++++|++|++++|.+..+... ..+..+++|+.|+|++|.+..... ...+..+ .|++|.+.+|.+....+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GGGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh-hhhcccC-CcceEEccCCcCccccCcchhHHH
Confidence 4577888888888776654321 113467888888888888776532 2234444 78888888888765332
Q ss_pred ccccCCCCCcEEec
Q 040144 95 LATVNFSSLTMLDL 108 (289)
Q Consensus 95 ~~l~~~~~L~~L~l 108 (289)
..+..+++|+.||-
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 23456788887764
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.51 E-value=0.00013 Score=54.69 Aligned_cols=114 Identities=11% Similarity=0.135 Sum_probs=66.2
Q ss_pred CCCCcccEEeccCc-ccccc--chhhHhhhcCCCccEEEccCCccCCCCcc----cccCCCCCcEEeccCCCCCCcchhh
Q 040144 48 SGISLLEHLDLRYV-NLSIA--FDWLMVANKLLSLVELRLSNCQLQHFSPL----ATVNFSSLTMLDLSHNQFDNSFILS 120 (289)
Q Consensus 48 ~~l~~L~~L~l~~~-~~~~~--~~~~~~~~~~~~L~~L~l~~~~l~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~ 120 (289)
.+-+.|++|+++++ .+... ..+...+.....|+.|++++|.+.+.... .+..-..|+.|+++.|.+++.....
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34566777777764 55443 23444566667788888888777654332 2334567778888877776332222
Q ss_pred ---HhhcCCCCCEEEccCc---eeeee----eChhhhcCCCCccEEeCCCCC
Q 040144 121 ---WVFALSHLPFLDLGFN---NFQGT----IDLEALGNLTSINRLDLSLNT 162 (289)
Q Consensus 121 ---~~~~~~~L~~L~l~~n---~~~~~----~~~~~~~~~~~L~~L~l~~n~ 162 (289)
.+..-..|++|+++++ .+... + .+++..-+.|..+++..+.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i-a~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM-MMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH-HHHHHHCSSCCEEECCCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHH-HHHHHhCCCcCeEeccCCC
Confidence 2333346777777654 22211 2 3445555677777776654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.33 E-value=0.00025 Score=53.10 Aligned_cols=118 Identities=11% Similarity=0.040 Sum_probs=83.2
Q ss_pred cCCCCCCcEEeCCCc-cccccCC---CcccCCCCcccEEeccCcccccc--chhhHhhhcCCCccEEEccCCccCCCCc-
Q 040144 22 LGNLSNLQFLDLSSK-YLLYVDN---FLWLSGISLLEHLDLRYVNLSIA--FDWLMVANKLLSLVELRLSNCQLQHFSP- 94 (289)
Q Consensus 22 l~~l~~L~~L~l~~~-~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~l~~~~~- 94 (289)
+.+-+.|++|+++++ .+.+.+. ...+..-..|+.|+|++|.+.+. ..+...+.....|++|++.+|.++..+.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 455678999999885 5443221 11245677899999999998765 4456677788899999999999986433
Q ss_pred ---ccccCCCCCcEEeccCC---CCCCc---chhhHhhcCCCCCEEEccCceee
Q 040144 95 ---LATVNFSSLTMLDLSHN---QFDNS---FILSWVFALSHLPFLDLGFNNFQ 139 (289)
Q Consensus 95 ---~~l~~~~~L~~L~l~~~---~~~~~---~~~~~~~~~~~L~~L~l~~n~~~ 139 (289)
..+..-..|+.|+++++ .+.+. .+...+..-+.|++|++..+.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 34455677999999865 44421 23445566788999999877653
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.89 E-value=0.008 Score=41.80 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=31.1
Q ss_pred EEEccCCeee-ecCCCce-----EEEeecceeeeeeccccccccccccEEEecCCeee
Q 040144 209 TFNLVNNSIV-GFIPWSF-----ELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLT 260 (289)
Q Consensus 209 ~L~l~~n~~~-~~~~~~~-----~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 260 (289)
.++-+++.++ ..+|..+ .|+|++|+++ .++...|..+++|+.|+|.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence 5666666665 2333322 6777777776 455546666777777777777654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.23 E-value=0.045 Score=37.94 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=17.5
Q ss_pred CccEEEccCCccCCCCcccccCCCCCcEEeccCCCC
Q 040144 78 SLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQF 113 (289)
Q Consensus 78 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~ 113 (289)
++++|++++|.++.+....|..+++|+.|++.+|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 344555555555444444444445555555554443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=72.82 E-value=3 Score=27.07 Aligned_cols=44 Identities=18% Similarity=-0.007 Sum_probs=32.6
Q ss_pred eeccccccccccccEEEecCCeeeeccCCCccccccccEEecccc
Q 040144 237 TLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSC 281 (289)
Q Consensus 237 ~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 281 (289)
.+....|.+|++|+.+.|..+ ++......|..|.+|+.+.+.+.
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 455557888999999988764 44444567888989988888764
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=69.50 E-value=7 Score=25.27 Aligned_cols=47 Identities=15% Similarity=0.161 Sum_probs=28.8
Q ss_pred cccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCc
Q 040144 13 RICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYV 61 (289)
Q Consensus 13 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 61 (289)
.++.....+|.+|..|+++.|-. .+..++... +.+|..|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~a-F~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQP-NIGLLYDGM-FSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTS-STTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCC-chheEcHHH-HhccCCccEEEEcCC
Confidence 34555556777788888777765 233333333 667777777776543
Done!