Query 040144
Match_columns 289
No_of_seqs 174 out of 2715
Neff 10.9
Searched_HMMs 13730
Date Mon Mar 25 08:28:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040144.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040144hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ogqa_ c.10.2.8 (A:) Polygala 100.0 5.4E-28 3.9E-32 197.2 19.4 253 3-289 51-311 (313)
2 d1ogqa_ c.10.2.8 (A:) Polygala 99.9 3.5E-26 2.5E-30 186.4 16.5 227 51-289 50-286 (313)
3 d1xkua_ c.10.2.7 (A:) Decorin 99.9 2.4E-23 1.8E-27 168.8 22.3 259 5-284 13-285 (305)
4 d2omza2 c.10.2.1 (A:33-416) In 99.9 1.6E-22 1.2E-26 168.9 23.1 253 2-285 44-365 (384)
5 d2omza2 c.10.2.1 (A:33-416) In 99.9 3E-22 2.2E-26 167.3 23.0 252 1-281 65-383 (384)
6 d1ozna_ c.10.2.7 (A:) Reticulo 99.9 8.2E-23 6E-27 163.9 16.9 204 3-218 33-238 (284)
7 d1xkua_ c.10.2.7 (A:) Decorin 99.9 1.1E-20 7.8E-25 153.0 25.3 236 27-284 11-255 (305)
8 d1ozna_ c.10.2.7 (A:) Reticulo 99.9 9.2E-22 6.7E-26 157.7 16.1 215 30-260 15-238 (284)
9 d1p9ag_ c.10.2.7 (G:) von Will 99.9 2.3E-21 1.7E-25 153.8 15.9 200 24-260 8-208 (266)
10 d1p9ag_ c.10.2.7 (G:) von Will 99.8 3.8E-20 2.7E-24 146.8 18.7 197 3-218 11-208 (266)
11 d1h6ua2 c.10.2.1 (A:36-262) In 99.8 6.7E-18 4.9E-22 130.5 15.9 189 47-280 37-226 (227)
12 d1h6ua2 c.10.2.1 (A:36-262) In 99.8 3E-17 2.2E-21 126.7 17.6 184 2-213 41-225 (227)
13 d1xwdc1 c.10.2.7 (C:18-259) Fo 99.7 1.8E-17 1.3E-21 129.3 12.6 197 78-281 30-235 (242)
14 d1xwdc1 c.10.2.7 (C:18-259) Fo 99.7 5.5E-17 4E-21 126.5 13.3 221 5-256 11-234 (242)
15 d2omxa2 c.10.2.1 (A:37-235) In 99.7 3.4E-16 2.5E-20 118.1 16.0 162 23-210 37-199 (199)
16 d1h6ta2 c.10.2.1 (A:31-240) In 99.7 2.9E-16 2.1E-20 119.6 15.1 165 24-214 44-209 (210)
17 d1h6ta2 c.10.2.1 (A:31-240) In 99.7 6.3E-16 4.6E-20 117.6 15.6 146 50-218 45-191 (210)
18 d2omxa2 c.10.2.1 (A:37-235) In 99.7 9.1E-16 6.6E-20 115.7 15.1 148 49-219 38-186 (199)
19 d2astb2 c.10.1.3 (B:2136-2419) 99.7 3.6E-17 2.6E-21 130.4 7.1 184 49-257 44-235 (284)
20 d1jl5a_ c.10.2.6 (A:) Leucine 99.7 1.1E-14 7.7E-19 119.3 22.1 243 3-289 39-341 (353)
21 d2astb2 c.10.1.3 (B:2136-2419) 99.7 2E-16 1.4E-20 126.2 10.0 220 23-271 43-270 (284)
22 d1jl5a_ c.10.2.6 (A:) Leucine 99.6 3.4E-14 2.5E-18 116.3 19.3 241 1-278 57-351 (353)
23 d1w8aa_ c.10.2.7 (A:) Slit {Fr 99.6 2.9E-15 2.1E-19 112.3 9.9 128 80-218 11-139 (192)
24 d1z7xw1 c.10.1.1 (W:1-460) Rib 99.6 2.9E-17 2.1E-21 139.5 -2.0 89 1-89 26-124 (460)
25 d2ca6a1 c.10.1.2 (A:2-345) Rna 99.6 9.4E-16 6.8E-20 125.7 6.4 192 20-219 25-257 (344)
26 d1w8aa_ c.10.2.7 (A:) Slit {Fr 99.6 3.2E-15 2.3E-19 112.1 8.7 107 103-220 10-117 (192)
27 d1z7xw1 c.10.1.1 (W:1-460) Rib 99.5 1.3E-16 9.2E-21 135.5 -2.3 113 2-114 2-125 (460)
28 d1a9na_ c.10.2.4 (A:) Spliceso 99.5 2E-14 1.5E-18 104.2 8.8 112 22-139 14-125 (162)
29 d2ca6a1 c.10.1.2 (A:2-345) Rna 99.5 6.6E-15 4.8E-19 120.5 5.5 232 47-285 27-316 (344)
30 d1a9na_ c.10.2.4 (A:) Spliceso 99.5 7.3E-14 5.4E-18 101.2 10.3 126 2-133 18-146 (162)
31 d1dcea3 c.10.2.2 (A:444-567) R 99.4 5E-13 3.7E-17 92.2 11.3 17 22-38 16-32 (124)
32 d1dcea3 c.10.2.2 (A:444-567) R 99.4 7.3E-13 5.3E-17 91.3 11.2 120 29-156 1-122 (124)
33 d1m9la_ c.10.3.1 (A:) Outer ar 99.3 3.4E-14 2.5E-18 106.6 -3.1 108 47-162 44-151 (198)
34 d1m9la_ c.10.3.1 (A:) Outer ar 99.3 3.1E-13 2.2E-17 101.3 1.0 130 117-277 39-180 (198)
35 d2ifga3 c.10.2.7 (A:36-191) Hi 99.1 2.4E-10 1.7E-14 81.8 10.5 83 128-218 10-93 (156)
36 d2ifga3 c.10.2.7 (A:36-191) Hi 99.1 3.5E-10 2.6E-14 80.9 9.9 64 73-138 52-115 (156)
37 d1koha1 c.10.2.3 (A:201-362) m 98.2 1.2E-07 9.1E-12 67.7 0.7 66 73-139 61-128 (162)
38 d1koha1 c.10.2.3 (A:201-362) m 98.2 3.5E-08 2.6E-12 70.7 -2.7 85 48-132 62-152 (162)
39 d1pgva_ c.10.1.1 (A:) Tropomod 98.0 5.9E-06 4.3E-10 59.0 6.5 41 50-90 43-85 (167)
40 d1pgva_ c.10.1.1 (A:) Tropomod 97.9 7.2E-06 5.3E-10 58.5 5.8 113 49-162 13-142 (167)
41 d1io0a_ c.10.1.1 (A:) Tropomod 97.5 4.5E-05 3.3E-09 54.2 4.2 42 49-90 44-87 (166)
42 d1io0a_ c.10.1.1 (A:) Tropomod 97.4 5.3E-05 3.9E-09 53.8 4.3 113 49-162 15-143 (166)
No 1
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Probab=99.96 E-value=5.4e-28 Score=197.25 Aligned_cols=253 Identities=23% Similarity=0.234 Sum_probs=173.9
Q ss_pred CCcEEEccCCcccc--cCCCccCCCCCCcEEeCCC-cccc-ccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCC
Q 040144 3 NLRYLNFSKTRICG--IIPQQLGNLSNLQFLDLSS-KYLL-YVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLS 78 (289)
Q Consensus 3 ~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 78 (289)
++++|+|+++.+++ .+|++++++++|++|++++ |.+. .++ ..+.++++|++|++++|.+..... ..+..+..
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP--~~i~~L~~L~~L~Ls~N~l~~~~~--~~~~~~~~ 126 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP--PAIAKLTQLHYLYITHTNVSGAIP--DFLSQIKT 126 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCC--GGGGGCTTCSEEEEEEECCEEECC--GGGGGCTT
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccc--cccccccccchhhhcccccccccc--ccccchhh
Confidence 46777777777665 4667777777777777775 3333 222 126677777777777777766532 14566777
Q ss_pred ccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCC-CEEEccCceeeeeeChhhhcCCCCccEEe
Q 040144 79 LVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHL-PFLDLGFNNFQGTIDLEALGNLTSINRLD 157 (289)
Q Consensus 79 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L-~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 157 (289)
|+.+++.+|.+....+..+..+++++.+++++|.+. +.+|..+..+..+ +.+++++|++.+.. +..+..+. ...++
T Consensus 127 L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~-~~ip~~~~~l~~l~~~l~~~~n~l~~~~-~~~~~~l~-~~~l~ 203 (313)
T d1ogqa_ 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS-GAIPDSYGSFSKLFTSMTISRNRLTGKI-PPTFANLN-LAFVD 203 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE-EECCGGGGCCCTTCCEEECCSSEEEEEC-CGGGGGCC-CSEEE
T ss_pred hcccccccccccccCchhhccCcccceeeccccccc-cccccccccccccccccccccccccccc-cccccccc-ccccc
Confidence 777777777776666667777777777777777765 5566666665554 67777777777555 55565554 33577
Q ss_pred CCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCceEEEeecceeee
Q 040144 158 LSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNV 236 (289)
Q Consensus 158 l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~ 236 (289)
+..+. ..+..|..+. ++.++.+++ +++.+.+.++ .+..+++|+.|++++|+++ |
T Consensus 204 l~~~~-~~~~~~~~~~~~~~l~~l~~------~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~-----------------g 258 (313)
T d1ogqa_ 204 LSRNM-LEGDASVLFGSDKNTQKIHL------AKNSLAFDLG-KVGLSKNLNGLDLRNNRIY-----------------G 258 (313)
T ss_dssp CCSSE-EEECCGGGCCTTSCCSEEEC------CSSEECCBGG-GCCCCTTCCEEECCSSCCE-----------------E
T ss_pred ccccc-cccccccccccccccccccc------cccccccccc-ccccccccccccCccCeec-----------------c
Confidence 76666 5555666655 666666664 5666665444 4566666777666666555 5
Q ss_pred eeccccccccccccEEEecCCeeeeccCCCccccccccEEeccccc-Ccc-CCCC
Q 040144 237 TLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSCY-IGS-RFPL 289 (289)
Q Consensus 237 ~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~-~~~-~~p~ 289 (289)
.+|. .++++++|++|++++|++++.+|. ++++++|+.+++++|+ +.| ++|.
T Consensus 259 ~iP~-~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~plp~ 311 (313)
T d1ogqa_ 259 TLPQ-GLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPA 311 (313)
T ss_dssp CCCG-GGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTTSSC
T ss_pred cCCh-HHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCCCCC
Confidence 6777 899999999999999999998875 5889999999999997 554 3663
No 2
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Probab=99.94 E-value=3.5e-26 Score=186.43 Aligned_cols=227 Identities=19% Similarity=0.259 Sum_probs=187.8
Q ss_pred CcccEEeccCccccccchhhHhhhcCCCccEEEccC-CccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCC
Q 040144 51 SLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSN-CQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLP 129 (289)
Q Consensus 51 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 129 (289)
.+++.|+++++.+.....++..+..+++|++|++++ |.+.+..|..++++++|++|++++|.+. ...+..+..+.+|+
T Consensus 50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~-~~~~~~~~~~~~L~ 128 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS-GAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE-EECCGGGGGCTTCC
T ss_pred EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccc-ccccccccchhhhc
Confidence 468899999988776433445888999999999986 6777667788899999999999999887 55566677888999
Q ss_pred EEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCc-ceeeccccccccCCcccccccccccCCCCC
Q 040144 130 FLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNL-KSINLQESLDMRSSSIYGHLTDQLGQFRNL 207 (289)
Q Consensus 130 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L-~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L 207 (289)
.+++++|.+.+.+ |..++.++.++.+++++|. +.+.+|..+. +..+ +.+.+ +.|.+++..+..+..+..
T Consensus 129 ~l~l~~N~~~~~~-p~~l~~l~~L~~l~l~~n~-l~~~ip~~~~~l~~l~~~l~~------~~n~l~~~~~~~~~~l~~- 199 (313)
T d1ogqa_ 129 TLDFSYNALSGTL-PPSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTI------SRNRLTGKIPPTFANLNL- 199 (313)
T ss_dssp EEECCSSEEESCC-CGGGGGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCEEEC------CSSEEEEECCGGGGGCCC-
T ss_pred ccccccccccccC-chhhccCcccceeeccccc-ccccccccccccccccccccc------cccccccccccccccccc-
Confidence 9999999888666 7888999999999999998 7777888777 6554 55554 788888888887777654
Q ss_pred cEEEccCCeeeecCCCce-------EEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCccccccccEEeccc
Q 040144 208 VTFNLVNNSIVGFIPWSF-------ELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHS 280 (289)
Q Consensus 208 ~~L~l~~n~~~~~~~~~~-------~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~ 280 (289)
..++++.+...+.+|..+ .+++.+|.+.+.++ .++.+++|+.|++++|++++.+|+.++++++|++|++++
T Consensus 200 ~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~--~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~ 277 (313)
T d1ogqa_ 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG--GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred ccccccccccccccccccccccccccccccccccccccc--ccccccccccccCccCeecccCChHHhCCCCCCEEECcC
Confidence 468898888887766655 78899999886554 478899999999999999999999999999999999999
Q ss_pred ccCccCCCC
Q 040144 281 CYIGSRFPL 289 (289)
Q Consensus 281 n~~~~~~p~ 289 (289)
|+++|.+|+
T Consensus 278 N~l~g~iP~ 286 (313)
T d1ogqa_ 278 NNLCGEIPQ 286 (313)
T ss_dssp SEEEEECCC
T ss_pred CcccccCCC
Confidence 999999985
No 3
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.92 E-value=2.4e-23 Score=168.81 Aligned_cols=259 Identities=20% Similarity=0.220 Sum_probs=185.5
Q ss_pred cEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEc
Q 040144 5 RYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRL 84 (289)
Q Consensus 5 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 84 (289)
+.++-.+..++ .+|..+. +++++|++++|.+..++... +.++++|++|+++++.+....+ ..+..++.|+++++
T Consensus 13 ~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~-f~~l~~L~~L~l~~n~~~~i~~--~~f~~l~~L~~L~l 86 (305)
T d1xkua_ 13 RVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGD-FKNLKNLHTLILINNKISKISP--GAFAPLVKLERLYL 86 (305)
T ss_dssp TEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSSCCCCBCT--TTTTTCTTCCEEEC
T ss_pred CEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhH-hhccccccccccccccccccch--hhhhCCCccCEecc
Confidence 45555555666 4565553 57888888888777666433 6778888888888888777632 25778888888888
Q ss_pred cCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeee-eChhhhcCCCCccEEeCCCCCc
Q 040144 85 SNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGT-IDLEALGNLTSINRLDLSLNTG 163 (289)
Q Consensus 85 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~~L~~L~l~~n~~ 163 (289)
++|.++.+.. ...+.+..|++..|.+. ......+.....+..++...+..... .....+..+++|+.+++++|.
T Consensus 87 ~~n~l~~l~~---~~~~~l~~L~~~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~- 161 (305)
T d1xkua_ 87 SKNQLKELPE---KMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN- 161 (305)
T ss_dssp CSSCCSBCCS---SCCTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-
T ss_pred cCCccCcCcc---chhhhhhhhhccccchh-hhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC-
Confidence 8888876543 23457788888888776 43344455566777777777654321 114567778888888888887
Q ss_pred ccCCCCccccccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCce-------EEEeecceeee
Q 040144 164 LTGRIPRSMALCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF-------ELHIYDNKLNV 236 (289)
Q Consensus 164 ~~~~~~~~~~~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~-------~L~l~~n~~~~ 236 (289)
+. .+|..+ +++|+.|++ ++|......+.++..++.++.|++++|.+.+..+..+ +|++++|.++
T Consensus 162 l~-~l~~~~-~~~L~~L~l------~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~- 232 (305)
T d1xkua_ 162 IT-TIPQGL-PPSLTELHL------DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV- 232 (305)
T ss_dssp CC-SCCSSC-CTTCSEEEC------TTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-
T ss_pred cc-ccCccc-CCccCEEEC------CCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-
Confidence 44 344332 567777775 7777777777788888888888888888876544433 8888888887
Q ss_pred eeccccccccccccEEEecCCeeeeccCCC------ccccccccEEecccccCc
Q 040144 237 TLFELHFANLIEMSWFRVGGNQLTLEVKHD------WIPHFQLVALGLHSCYIG 284 (289)
Q Consensus 237 ~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~------~~~~~~L~~l~l~~n~~~ 284 (289)
.+|. .+.++++|++|++++|+++...... .....+|+.|++++|.+.
T Consensus 233 ~lp~-~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 233 KVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp SCCT-TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred cccc-ccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence 6887 8999999999999999998643322 345678999999999875
No 4
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}
Probab=99.91 E-value=1.6e-22 Score=168.89 Aligned_cols=253 Identities=20% Similarity=0.244 Sum_probs=156.7
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
.+|++|++.++.++. + +.+..+++|++|++++|.+...++ +.++++|++|++++|.+.... .+..+++|+.
T Consensus 44 ~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~l~~---l~~L~~L~~L~L~~n~i~~i~----~l~~l~~L~~ 114 (384)
T d2omza2 44 DQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADIT----PLANLTNLTG 114 (384)
T ss_dssp TTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCG----GGTTCTTCCE
T ss_pred CCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCCCcc---ccCCccccccccccccccccc----cccccccccc
Confidence 468888888888764 3 347778888888888887766653 677888888888888877643 3567788888
Q ss_pred EEccCCccCCCCc---------------------------------------------------------------cccc
Q 040144 82 LRLSNCQLQHFSP---------------------------------------------------------------LATV 98 (289)
Q Consensus 82 L~l~~~~l~~~~~---------------------------------------------------------------~~l~ 98 (289)
+++.++.+..... ....
T Consensus 115 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (384)
T d2omza2 115 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 194 (384)
T ss_dssp EECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGG
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccc
Confidence 8887765443100 1123
Q ss_pred CCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCc
Q 040144 99 NFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNL 177 (289)
Q Consensus 99 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L 177 (289)
.+++++.+++++|.++ ...+ ...+++|++|++++|.+. .+ ..+..+++++.+++++|. +.+ .+ .+. +++|
T Consensus 195 ~l~~~~~l~l~~n~i~-~~~~--~~~~~~L~~L~l~~n~l~-~~--~~l~~l~~L~~L~l~~n~-l~~-~~-~~~~~~~L 265 (384)
T d2omza2 195 KLTNLESLIATNNQIS-DITP--LGILTNLDELSLNGNQLK-DI--GTLASLTNLTDLDLANNQ-ISN-LA-PLSGLTKL 265 (384)
T ss_dssp GCTTCSEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCC-CC--GGGGGCTTCSEEECCSSC-CCC-CG-GGTTCTTC
T ss_pred cccccceeeccCCccC-CCCc--ccccCCCCEEECCCCCCC-Cc--chhhcccccchhccccCc-cCC-CC-cccccccC
Confidence 3456667777776665 2222 345667777777777765 23 346667777777777776 543 22 244 6677
Q ss_pred ceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecC-----CCceEEEeecceeeeeeccccccccccccEE
Q 040144 178 KSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFI-----PWSFELHIYDNKLNVTLFELHFANLIEMSWF 252 (289)
Q Consensus 178 ~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~-----~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l 252 (289)
+++++ +++.+.+..+ +..++.++.+.+++|.+.+.. +....+++++|++++ ++. +..+++|++|
T Consensus 266 ~~L~l------~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~-l~~--l~~l~~L~~L 334 (384)
T d2omza2 266 TELKL------GANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD-ISP--VSSLTKLQRL 334 (384)
T ss_dssp SEEEC------CSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSC-CGG--GGGCTTCCEE
T ss_pred CEeec------cCcccCCCCc--cccccccccccccccccccccccchhcccCeEECCCCCCCC-Ccc--cccCCCCCEE
Confidence 77765 4555543322 445555555555555554321 111166666666653 322 5566677777
Q ss_pred EecCCeeeeccCCCccccccccEEecccccCcc
Q 040144 253 RVGGNQLTLEVKHDWIPHFQLVALGLHSCYIGS 285 (289)
Q Consensus 253 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 285 (289)
++++|++++ ++ .+..+++|+.|++++|++++
T Consensus 335 ~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~ 365 (384)
T d2omza2 335 FFANNKVSD-VS-SLANLTNINWLSAGHNQISD 365 (384)
T ss_dssp ECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCB
T ss_pred ECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCC
Confidence 777776664 22 46666677777777776664
No 5
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}
Probab=99.90 E-value=3e-22 Score=167.26 Aligned_cols=252 Identities=25% Similarity=0.348 Sum_probs=194.7
Q ss_pred CCCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchh-----------
Q 040144 1 MGNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDW----------- 69 (289)
Q Consensus 1 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----------- 69 (289)
+++|++|++++|++++ ++ .++++++|++|++++|.+..+.+ +.++++|+.++++++.+......
T Consensus 65 L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~~i~~---l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~ 139 (384)
T d2omza2 65 LNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 139 (384)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEE
T ss_pred CCCCCEEeCcCCcCCC-Cc-cccCCcccccccccccccccccc---cccccccccccccccccccccccccccccccccc
Confidence 5789999999999986 43 39999999999999998776543 67889999998877654432100
Q ss_pred --------------------------------------------------hHhhhcCCCccEEEccCCccCCCCcccccC
Q 040144 70 --------------------------------------------------LMVANKLLSLVELRLSNCQLQHFSPLATVN 99 (289)
Q Consensus 70 --------------------------------------------------~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 99 (289)
......++.++.+.+.++.+....+ +..
T Consensus 140 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~ 217 (384)
T d2omza2 140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGI 217 (384)
T ss_dssp EEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGG
T ss_pred ccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc--ccc
Confidence 0134456788888998888876533 466
Q ss_pred CCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcc
Q 040144 100 FSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLK 178 (289)
Q Consensus 100 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~ 178 (289)
+++|+.|++++|.++ .. ..+..+++++.+++++|.+++ + ..++.+++|++++++++. +.+ .+. +. ++.++
T Consensus 218 ~~~L~~L~l~~n~l~--~~-~~l~~l~~L~~L~l~~n~l~~-~--~~~~~~~~L~~L~l~~~~-l~~-~~~-~~~~~~l~ 288 (384)
T d2omza2 218 LTNLDELSLNGNQLK--DI-GTLASLTNLTDLDLANNQISN-L--APLSGLTKLTELKLGANQ-ISN-ISP-LAGLTALT 288 (384)
T ss_dssp CTTCCEEECCSSCCC--CC-GGGGGCTTCSEEECCSSCCCC-C--GGGTTCTTCSEEECCSSC-CCC-CGG-GTTCTTCS
T ss_pred cCCCCEEECCCCCCC--Cc-chhhcccccchhccccCccCC-C--CcccccccCCEeeccCcc-cCC-CCc-cccccccc
Confidence 789999999999987 23 356788999999999999874 3 347789999999999988 553 332 34 67777
Q ss_pred eeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecC-----CCceEEEeecceeeeeeccccccccccccEEE
Q 040144 179 SINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFI-----PWSFELHIYDNKLNVTLFELHFANLIEMSWFR 253 (289)
Q Consensus 179 ~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~-----~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~ 253 (289)
.+.+ ..|.+.+. ..+..+++++.|++++|.+++.. |..-.|++++|.++ .++ .+.++++|++|+
T Consensus 289 ~l~~------~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~-~l~--~l~~l~~L~~L~ 357 (384)
T d2omza2 289 NLEL------NENQLEDI--SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVS-DVS--SLANLTNINWLS 357 (384)
T ss_dssp EEEC------CSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCC-CCG--GGGGCTTCCEEE
T ss_pred cccc------cccccccc--cccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCC-CCh--hHcCCCCCCEEE
Confidence 7765 67777643 34778899999999999988643 22228999999987 455 488999999999
Q ss_pred ecCCeeeeccCCCccccccccEEecccc
Q 040144 254 VGGNQLTLEVKHDWIPHFQLVALGLHSC 281 (289)
Q Consensus 254 l~~n~~~~~~~~~~~~~~~L~~l~l~~n 281 (289)
+++|++++..| +..+++|+.|++++|
T Consensus 358 l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 358 AGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp CCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred CCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 99999997543 889999999999987
No 6
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.90 E-value=8.2e-23 Score=163.94 Aligned_cols=204 Identities=25% Similarity=0.287 Sum_probs=140.8
Q ss_pred CCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCc-cccccchhhHhhhcCCCccE
Q 040144 3 NLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYV-NLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~ 81 (289)
.+++|+|++|.++...+.+|.++++|++|+++++.+..+.... +..+..++++....+ .+..... ..+..+++|++
T Consensus 33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~-~~~~~~~~~l~~~~~~~~~~l~~--~~~~~l~~L~~ 109 (284)
T d1ozna_ 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA-FTGLALLEQLDLSDNAQLRSVDP--ATFHGLGRLHT 109 (284)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSCTTCCCCCT--TTTTTCTTCCE
T ss_pred CCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccc-ccccccccccccccccccccccc--hhhcccccCCE
Confidence 4677778777777655566777777888887777665555433 455666777665433 3333321 25667777888
Q ss_pred EEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCC
Q 040144 82 LRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLN 161 (289)
Q Consensus 82 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 161 (289)
|++++|.+.......+....+|+.+++++|.++ ...+..+..+++|++|++++|.+. .+++.+|.++++|+++++++|
T Consensus 110 L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~-~i~~~~f~~~~~L~~L~l~~N~l~-~l~~~~f~~l~~L~~l~l~~N 187 (284)
T d1ozna_ 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQN 187 (284)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSS
T ss_pred EecCCcccccccccccchhcccchhhhcccccc-ccChhHhccccchhhcccccCccc-ccchhhhccccccchhhhhhc
Confidence 888877776666666667777788888877776 333445666777888888887776 343667777778888888777
Q ss_pred CcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeee
Q 040144 162 TGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIV 218 (289)
Q Consensus 162 ~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 218 (289)
. +.+..|..+. +++|++|++ +.|.+.+..+.+++++++|+.|++++|.+.
T Consensus 188 ~-l~~i~~~~f~~l~~L~~L~l------~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~ 238 (284)
T d1ozna_ 188 R-VAHVHPHAFRDLGRLMTLYL------FANNLSALPTEALAPLRALQYLRLNDNPWV 238 (284)
T ss_dssp C-CCEECTTTTTTCTTCCEEEC------CSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred c-ccccChhHhhhhhhcccccc------cccccccccccccccccccCEEEecCCCCC
Confidence 7 6655666777 777777765 777777777777777778888888777766
No 7
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.88 E-value=1.1e-20 Score=153.04 Aligned_cols=236 Identities=21% Similarity=0.151 Sum_probs=185.5
Q ss_pred CCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEE
Q 040144 27 NLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTML 106 (289)
Q Consensus 27 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L 106 (289)
..+.++-++.....++.. + .+.+++|++++|.+...++ ..+.++++|++|++.+|.+....+..+..+++|+.|
T Consensus 11 ~~~~~~C~~~~L~~lP~~--l--~~~l~~L~Ls~N~i~~l~~--~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L 84 (305)
T d1xkua_ 11 HLRVVQCSDLGLEKVPKD--L--PPDTALLDLQNNKITEIKD--GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 84 (305)
T ss_dssp ETTEEECTTSCCCSCCCS--C--CTTCCEEECCSSCCCCBCT--TTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred cCCEEEecCCCCCccCCC--C--CCCCCEEECcCCcCCCcCh--hHhhccccccccccccccccccchhhhhCCCccCEe
Confidence 556777776656655532 2 3679999999999988753 257889999999999999998888889999999999
Q ss_pred eccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCc-ccCCCCcccc-ccCcceeeccc
Q 040144 107 DLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTG-LTGRIPRSMA-LCNLKSINLQE 184 (289)
Q Consensus 107 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~-~~~~~~~~~~-~~~L~~L~l~~ 184 (289)
++++|+++ .++.. ....+..|+..+|.+.+ +....+........++...+.. .....+..+. +++|+.+++
T Consensus 85 ~l~~n~l~--~l~~~--~~~~l~~L~~~~n~l~~-l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l-- 157 (305)
T d1xkua_ 85 YLSKNQLK--ELPEK--MPKTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI-- 157 (305)
T ss_dssp ECCSSCCS--BCCSS--CCTTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC--
T ss_pred cccCCccC--cCccc--hhhhhhhhhccccchhh-hhhhhhhccccccccccccccccccCCCccccccccccCcccc--
Confidence 99999986 44533 35679999999998874 4366777888888999888751 1222334455 777887775
Q ss_pred cccccCCcccccccccccCCCCCcEEEccCCeeeecCCCce-------EEEeecceeeeeeccccccccccccEEEecCC
Q 040144 185 SLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF-------ELHIYDNKLNVTLFELHFANLIEMSWFRVGGN 257 (289)
Q Consensus 185 ~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~-------~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n 257 (289)
++|.+.. ++.. .+++|+.|++++|......+..+ .|++++|.+.+..+. ++.++++|++|++++|
T Consensus 158 ----~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~-~~~~l~~L~~L~L~~N 229 (305)
T d1xkua_ 158 ----ADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG-SLANTPHLRELHLNNN 229 (305)
T ss_dssp ----CSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT-TGGGSTTCCEEECCSS
T ss_pred ----ccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccc-cccccccceeeecccc
Confidence 7777764 3332 36799999999998887655544 899999999854455 8999999999999999
Q ss_pred eeeeccCCCccccccccEEecccccCc
Q 040144 258 QLTLEVKHDWIPHFQLVALGLHSCYIG 284 (289)
Q Consensus 258 ~~~~~~~~~~~~~~~L~~l~l~~n~~~ 284 (289)
+++. +|..+..+++|+.|++++|+|+
T Consensus 230 ~L~~-lp~~l~~l~~L~~L~Ls~N~i~ 255 (305)
T d1xkua_ 230 KLVK-VPGGLADHKYIQVVYLHNNNIS 255 (305)
T ss_dssp CCSS-CCTTTTTCSSCCEEECCSSCCC
T ss_pred cccc-cccccccccCCCEEECCCCccC
Confidence 9985 7889999999999999999997
No 8
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.87 E-value=9.2e-22 Score=157.75 Aligned_cols=215 Identities=20% Similarity=0.176 Sum_probs=149.3
Q ss_pred EEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEEecc
Q 040144 30 FLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLS 109 (289)
Q Consensus 30 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~ 109 (289)
.++.+++....++.. + ...+++|++++|.++..+. ..+..++.|++++++++.+....+..+.....+..+...
T Consensus 15 ~v~c~~~~L~~iP~~--i--p~~~~~L~Ls~N~i~~i~~--~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~ 88 (284)
T d1ozna_ 15 TTSCPQQGLQAVPVG--I--PAASQRIFLHGNRISHVPA--ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (284)
T ss_dssp EEECCSSCCSSCCTT--C--CTTCSEEECTTSCCCEECT--TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred EEEcCCCCCCccCCC--C--CCCCCEEECcCCcCCCCCH--HHhhccccccccccccccccccccccccccccccccccc
Confidence 345555444444321 2 3467899999998877643 257788899999999998888777777778888888765
Q ss_pred -CCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeecccccc
Q 040144 110 -HNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLD 187 (289)
Q Consensus 110 -~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~ 187 (289)
.+.++ ...+..+..+++|++|++++|.+.. +....+....+|+.+++++|. ++...+..++ +++|+.|++
T Consensus 89 ~~~~~~-~l~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~l~l~~N~-l~~i~~~~f~~~~~L~~L~l----- 160 (284)
T d1ozna_ 89 DNAQLR-SVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFL----- 160 (284)
T ss_dssp SCTTCC-CCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC-----
T ss_pred cccccc-cccchhhcccccCCEEecCCccccc-ccccccchhcccchhhhcccc-ccccChhHhccccchhhccc-----
Confidence 34454 3445567788899999999988763 335677788889999999988 6655556676 888888876
Q ss_pred ccCCcccccccccccCCCCCcEEEccCCeeeecCCCce-------EEEeecceeeeeeccccccccccccEEEecCCeee
Q 040144 188 MRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF-------ELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLT 260 (289)
Q Consensus 188 l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~-------~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 260 (289)
++|.+....+.++..+++|+.+++++|.+++..|..+ .|++++|.+.+..+. .++++++|++|++++|++.
T Consensus 161 -~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~-~~~~~~~L~~L~l~~N~l~ 238 (284)
T d1ozna_ 161 -HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE-ALAPLRALQYLRLNDNPWV 238 (284)
T ss_dssp -CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH-HHTTCTTCCEEECCSSCEE
T ss_pred -ccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccc-ccccccccCEEEecCCCCC
Confidence 8888887778888889999999999888875444333 455555555432222 4555555555555555544
No 9
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.87 E-value=2.3e-21 Score=153.83 Aligned_cols=200 Identities=23% Similarity=0.207 Sum_probs=139.1
Q ss_pred CCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCC
Q 040144 24 NLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSL 103 (289)
Q Consensus 24 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L 103 (289)
+...+.+.+.+++.+..++.. + .+.+++|++++|.+...+. ..+..+++|++|++++|.++.+. .++.+++|
T Consensus 8 ~~~~~~~v~C~~~~L~~iP~~--l--p~~l~~L~Ls~N~i~~l~~--~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L 79 (266)
T d1p9ag_ 8 KVASHLEVNCDKRNLTALPPD--L--PKDTTILHLSENLLYTFSL--ATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVL 79 (266)
T ss_dssp CSTTCCEEECTTSCCSSCCSC--C--CTTCCEEECTTSCCSEEEG--GGGTTCTTCCEEECTTSCCCEEE--CCSCCTTC
T ss_pred ccCCCeEEEccCCCCCeeCcC--c--CcCCCEEECcCCcCCCcCH--HHhhccccccccccccccccccc--cccccccc
Confidence 445566677777666655422 2 2468888888888777642 25677888888888888877542 34667888
Q ss_pred cEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeec
Q 040144 104 TMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINL 182 (289)
Q Consensus 104 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l 182 (289)
+.|++++|.++ ..+..+..+++|+.|+++++.+.+ +.+..+..+.+++++++++|. +....+..+. ++.++.+++
T Consensus 80 ~~L~Ls~N~l~--~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~l~~L~l~~n~-l~~l~~~~~~~l~~l~~l~l 155 (266)
T d1p9ag_ 80 GTLDLSHNQLQ--SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSL 155 (266)
T ss_dssp CEEECCSSCCS--SCCCCTTTCTTCCEEECCSSCCCC-CCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred ccccccccccc--ccccccccccccccccccccccce-eeccccccccccccccccccc-cceeccccccccccchhccc
Confidence 88888888775 344456677888888888887763 335667777888888888877 5543344444 677777765
Q ss_pred cccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCceEEEeecceeeeeeccccccccccccEEEecCCeee
Q 040144 183 QESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLT 260 (289)
Q Consensus 183 ~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 260 (289)
++|.+++..+..++.+++|+.|++++|.++ .+|. .+..+++|+.|+|++|++.
T Consensus 156 ------~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~------------------~lp~-~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 156 ------ANNNLTELPAGLLNGLENLDTLLLQENSLY------------------TIPK-GFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp ------TTSCCSCCCTTTTTTCTTCCEEECCSSCCC------------------CCCT-TTTTTCCCSEEECCSCCBC
T ss_pred ------ccccccccCccccccccccceeecccCCCc------------------ccCh-hHCCCCCCCEEEecCCCCC
Confidence 777777777777777788888888777776 4555 5566778888888888765
No 10
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.85 E-value=3.8e-20 Score=146.75 Aligned_cols=197 Identities=27% Similarity=0.278 Sum_probs=162.2
Q ss_pred CCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEE
Q 040144 3 NLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVEL 82 (289)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 82 (289)
.+.+++.+++.++. +|..+. +++++|++++|.+..++... +.++++|++|++++|.+...+ .+..+++|++|
T Consensus 11 ~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~-f~~l~~L~~L~L~~N~l~~l~----~~~~l~~L~~L 82 (266)
T d1p9ag_ 11 SHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLAT-LMPYTRLTQLNLDRAELTKLQ----VDGTLPVLGTL 82 (266)
T ss_dssp TCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGG-GTTCTTCCEEECTTSCCCEEE----CCSCCTTCCEE
T ss_pred CCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHH-hhccccccccccccccccccc----ccccccccccc
Confidence 45567888888884 676553 58999999999887766443 788999999999999988764 34678999999
Q ss_pred EccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCC
Q 040144 83 RLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNT 162 (289)
Q Consensus 83 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 162 (289)
++++|.+... +..+..+++|+.|+++++.+. ......+..+.++++|++.+|.+. .+++..+..+++++.+++++|.
T Consensus 83 ~Ls~N~l~~~-~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~l~~l~l~~N~ 159 (266)
T d1p9ag_ 83 DLSHNQLQSL-PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN 159 (266)
T ss_dssp ECCSSCCSSC-CCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSC
T ss_pred cccccccccc-ccccccccccccccccccccc-eeeccccccccccccccccccccc-eeccccccccccchhccccccc
Confidence 9999998875 456788999999999999886 444555677889999999999988 5546778889999999999999
Q ss_pred cccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeee
Q 040144 163 GLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIV 218 (289)
Q Consensus 163 ~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 218 (289)
+....+..+. +++|++|++ ++|.++ .+|..+..+++|+.|++++|.+.
T Consensus 160 -l~~~~~~~~~~l~~L~~L~L------s~N~L~-~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 160 -LTELPAGLLNGLENLDTLLL------QENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp -CSCCCTTTTTTCTTCCEEEC------CSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred -ccccCccccccccccceeec------ccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence 7766666777 999999987 899998 67777778999999999999876
No 11
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}
Probab=99.77 E-value=6.7e-18 Score=130.46 Aligned_cols=189 Identities=20% Similarity=0.253 Sum_probs=125.1
Q ss_pred cCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCC
Q 040144 47 LSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALS 126 (289)
Q Consensus 47 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 126 (289)
.+.+..|+.|++.+|.+.... .+.++++|++|++++|.+.... .+..+++++.+++++|.++ .++ .+..++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~----~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~--~i~-~l~~l~ 107 (227)
T d1h6ua2 37 QADLDGITTLSAFGTGVTTIE----GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK--NVS-AIAGLQ 107 (227)
T ss_dssp HHHHHTCCEEECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS--CCG-GGTTCT
T ss_pred HHHcCCcCEEECCCCCCCcch----hHhcCCCCcEeecCCceeeccc--ccccccccccccccccccc--ccc-cccccc
Confidence 345667777777777666542 4566777777777777766542 3667777777777777665 222 355677
Q ss_pred CCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCC
Q 040144 127 HLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFR 205 (289)
Q Consensus 127 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~ 205 (289)
+|+.++++++...+ ...+...+.+..+.++.+. +.. ...+. +++|+.|++ ++|.+.... .+++++
T Consensus 108 ~L~~l~l~~~~~~~---~~~~~~~~~~~~l~~~~~~-~~~--~~~~~~~~~L~~L~l------~~n~~~~~~--~l~~l~ 173 (227)
T d1h6ua2 108 SIKTLDLTSTQITD---VTPLAGLSNLQVLYLDLNQ-ITN--ISPLAGLTNLQYLSI------GNAQVSDLT--PLANLS 173 (227)
T ss_dssp TCCEEECTTSCCCC---CGGGTTCTTCCEEECCSSC-CCC--CGGGGGCTTCCEEEC------CSSCCCCCG--GGTTCT
T ss_pred cccccccccccccc---cchhccccchhhhhchhhh-hch--hhhhccccccccccc------cccccccch--hhcccc
Confidence 77777777776552 2335566677777776665 332 12234 666777765 566655332 267788
Q ss_pred CCcEEEccCCeeeecCCCceEEEeecceeeeeeccccccccccccEEEecCCeeeeccCCCccccccccEEeccc
Q 040144 206 NLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHS 280 (289)
Q Consensus 206 ~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~ 280 (289)
+|+.|++++|++. .++. ++++++|++|++++|++++. + .+..+++|+.|++++
T Consensus 174 ~L~~L~Ls~n~l~------------------~l~~--l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 174 KLTTLKADDNKIS------------------DISP--LASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN 226 (227)
T ss_dssp TCCEEECCSSCCC------------------CCGG--GGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred cceecccCCCccC------------------CChh--hcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence 8888888887766 3333 67888999999999988864 3 377888899988863
No 12
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}
Probab=99.75 E-value=3e-17 Score=126.72 Aligned_cols=184 Identities=24% Similarity=0.314 Sum_probs=125.2
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
.+|++|++.+|.++. + +.+.++++|++|++++|.+....+ +.+++++++++++++.+.... .+..+++|+.
T Consensus 41 ~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~---l~~l~~l~~l~~~~n~~~~i~----~l~~l~~L~~ 111 (227)
T d1h6ua2 41 DGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNVS----AIAGLQSIKT 111 (227)
T ss_dssp HTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSCCG----GGTTCTTCCE
T ss_pred CCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc---ccccccccccccccccccccc----cccccccccc
Confidence 367788888887764 3 347778888888888876655433 567778888888877766543 4567778888
Q ss_pred EEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCC
Q 040144 82 LRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLN 161 (289)
Q Consensus 82 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 161 (289)
+.+.++..... ..+...+.+..+.++.+.+. . ...+..+++|++|++++|.+.+ . ..++++++|++|++++|
T Consensus 112 l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~-~--~~~~~~~~~L~~L~l~~n~~~~-~--~~l~~l~~L~~L~Ls~n 183 (227)
T d1h6ua2 112 LDLTSTQITDV--TPLAGLSNLQVLYLDLNQIT-N--ISPLAGLTNLQYLSIGNAQVSD-L--TPLANLSKLTTLKADDN 183 (227)
T ss_dssp EECTTSCCCCC--GGGTTCTTCCEEECCSSCCC-C--CGGGGGCTTCCEEECCSSCCCC-C--GGGTTCTTCCEEECCSS
T ss_pred ccccccccccc--chhccccchhhhhchhhhhc-h--hhhhcccccccccccccccccc-c--hhhcccccceecccCCC
Confidence 88877765543 34556677777887777664 2 2234567778888888877652 2 34677788888888887
Q ss_pred CcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEcc
Q 040144 162 TGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLV 213 (289)
Q Consensus 162 ~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~ 213 (289)
. +.+ ++ .++ +++|++|++ ++|.+++..+ ++++++|+.|+++
T Consensus 184 ~-l~~-l~-~l~~l~~L~~L~L------s~N~lt~i~~--l~~l~~L~~L~ls 225 (227)
T d1h6ua2 184 K-ISD-IS-PLASLPNLIEVHL------KNNQISDVSP--LANTSNLFIVTLT 225 (227)
T ss_dssp C-CCC-CG-GGGGCTTCCEEEC------TTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred c-cCC-Ch-hhcCCCCCCEEEC------cCCcCCCCcc--cccCCCCCEEEee
Confidence 7 553 33 355 777777775 7777775433 6778888888876
No 13
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.73 E-value=1.8e-17 Score=129.33 Aligned_cols=197 Identities=18% Similarity=0.116 Sum_probs=108.8
Q ss_pred CccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccC-ceeeeeeChhhhcCCCCccEE
Q 040144 78 SLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGF-NNFQGTIDLEALGNLTSINRL 156 (289)
Q Consensus 78 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~~L~~L 156 (289)
++++|++++|.++.+....|.++++|++|++++|.+.....+..+..+++++++.+.. +++. ..++..+.++++|+++
T Consensus 30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~-~~~~~~~~~l~~L~~l 108 (242)
T d1xwdc1 30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYL 108 (242)
T ss_dssp CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCC-EECTTSEECCTTCCEE
T ss_pred CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccc-cccccccccccccccc
Confidence 4556666666555544445555666666666665554111122344455566655543 2333 2224555666666666
Q ss_pred eCCCCCcccCCCCccccccCcceeeccccccccCCcccccccccccCCC-CCcEEEccCCeeeecCCCce-------EEE
Q 040144 157 DLSLNTGLTGRIPRSMALCNLKSINLQESLDMRSSSIYGHLTDQLGQFR-NLVTFNLVNNSIVGFIPWSF-------ELH 228 (289)
Q Consensus 157 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~-~L~~L~l~~n~~~~~~~~~~-------~L~ 228 (289)
+++++. +.. .+....+..++.+.. ....++.+....+..+..++ .++.+++++|.++...+..+ .++
T Consensus 109 ~l~~~~-l~~-~~~~~~~~~l~~l~~---~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~ 183 (242)
T d1xwdc1 109 LISNTG-IKH-LPDVHKIHSLQKVLL---DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNL 183 (242)
T ss_dssp EEESCC-CCS-CCCCTTTCBSSCEEE---EEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEEC
T ss_pred ccchhh-hcc-ccccccccccccccc---ccccccccccccccccccccccceeeecccccccccccccccchhhhcccc
Confidence 666655 332 111111223332221 11233344434444444443 56667776666654322221 234
Q ss_pred eecceeeeeeccccccccccccEEEecCCeeeeccCCCccccccccEEecccc
Q 040144 229 IYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHDWIPHFQLVALGLHSC 281 (289)
Q Consensus 229 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 281 (289)
+.+|+++ +++...|.++++|++|++++|+++...+..+..+++|+.+++++.
T Consensus 184 l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~l 235 (242)
T d1xwdc1 184 SDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235 (242)
T ss_dssp TTCTTCC-CCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEESS
T ss_pred ccccccc-cccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCCC
Confidence 5556666 677657889999999999999999755567888888888887664
No 14
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.71 E-value=5.5e-17 Score=126.45 Aligned_cols=221 Identities=19% Similarity=0.158 Sum_probs=153.9
Q ss_pred cEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEc
Q 040144 5 RYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRL 84 (289)
Q Consensus 5 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 84 (289)
+.++..+..++ .+|..+. +++++|++++|.+..++... +.++++|++|++++|.+....+ ...+..++.++++.+
T Consensus 11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~-f~~l~~L~~L~ls~n~~~~~i~-~~~f~~l~~l~~l~~ 85 (242)
T d1xwdc1 11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGA-FSGFGDLEKIEISQNDVLEVIE-ADVFSNLPKLHEIRI 85 (242)
T ss_dssp SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTT-TTTCTTCCEEEEESCTTCCEEC-SSSEESCTTCCEEEE
T ss_pred CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhH-hhccchhhhhhhccccccceee-ccccccccccccccc
Confidence 46677777776 4665443 58999999999877666543 7889999999999998765422 125678889999987
Q ss_pred cC-CccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCC-CCccEEeCCCCC
Q 040144 85 SN-CQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNL-TSINRLDLSLNT 162 (289)
Q Consensus 85 ~~-~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~L~~L~l~~n~ 162 (289)
.. +.+....+..+..+++|+.+++.++.+...........+..+..+...++.+. .++...+.++ ..++.+++++|.
T Consensus 86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~-~i~~~~~~~~~~~l~~L~l~~n~ 164 (242)
T d1xwdc1 86 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNG 164 (242)
T ss_dssp ECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSC
T ss_pred cccccccccccccccccccccccccchhhhcccccccccccccccccccccccccc-cccccccccccccceeeeccccc
Confidence 65 56666667778899999999999998862222223334555655566666665 4435556555 478899999988
Q ss_pred cccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeeeecCCCceEEEeecceeeeeeccc
Q 040144 163 GLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFEL 241 (289)
Q Consensus 163 ~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~ 241 (289)
+. .++.... .++++++.. +++|.++...+..|.++++|+.|++++|+++ .+|..
T Consensus 165 -l~-~i~~~~~~~~~l~~~~~-----l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~------------------~l~~~ 219 (242)
T d1xwdc1 165 -IQ-EIHNCAFNGTQLDELNL-----SDNNNLEELPNDVFHGASGPVILDISRTRIH------------------SLPSY 219 (242)
T ss_dssp -CC-EECTTTTTTCCEEEEEC-----TTCTTCCCCCTTTTTTSCCCSEEECTTSCCC------------------CCCSS
T ss_pred -cc-ccccccccchhhhcccc-----ccccccccccHHHhcCCCCCCEEECCCCcCC------------------ccCHH
Confidence 55 3443333 555555432 4777888666677899999999999999887 44443
Q ss_pred cccccccccEEEecC
Q 040144 242 HFANLIEMSWFRVGG 256 (289)
Q Consensus 242 ~~~~~~~L~~l~l~~ 256 (289)
.+.++++|+.+++.+
T Consensus 220 ~~~~l~~L~~l~~~~ 234 (242)
T d1xwdc1 220 GLENLKKLRARSTYN 234 (242)
T ss_dssp SCTTCCEEESSSEES
T ss_pred HHcCCcccccCcCCC
Confidence 566777777666543
No 15
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.70 E-value=3.4e-16 Score=118.14 Aligned_cols=162 Identities=24% Similarity=0.352 Sum_probs=122.6
Q ss_pred CCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCC
Q 040144 23 GNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSS 102 (289)
Q Consensus 23 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 102 (289)
..++++++|+++++.+..... +..+++|++|++++|.+.... .+..+++|++|++++|.+.... .+..+++
T Consensus 37 ~~l~~l~~L~l~~~~i~~l~~---l~~l~nL~~L~Ls~N~l~~~~----~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~ 107 (199)
T d2omxa2 37 TDLDQVTTLQADRLGIKSIDG---VEYLNNLTQINFSNNQLTDIT----PLKNLTKLVDILMNNNQIADIT--PLANLTN 107 (199)
T ss_dssp HHHTTCCEEECTTSCCCCCTT---GGGCTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCCCG--GGTTCTT
T ss_pred HHhcCCCEEECCCCCCCCccc---cccCCCcCcCccccccccCcc----cccCCccccccccccccccccc--ccccccc
Confidence 457788899998887766543 667889999999998877653 4678888999999988876653 4778889
Q ss_pred CcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceee
Q 040144 103 LTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSIN 181 (289)
Q Consensus 103 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~ 181 (289)
|+.++++++... . ...+..+++|+.+++++|.+. .+ ..+..+++++++++.+|. +++ ++ .+. +++|+.|+
T Consensus 108 L~~L~l~~~~~~-~--~~~~~~l~~L~~L~l~~n~l~-~~--~~l~~~~~L~~L~l~~n~-l~~-l~-~l~~l~~L~~L~ 178 (199)
T d2omxa2 108 LTGLTLFNNQIT-D--IDPLKNLTNLNRLELSSNTIS-DI--SALSGLTSLQQLNFSSNQ-VTD-LK-PLANLTTLERLD 178 (199)
T ss_dssp CSEEECCSSCCC-C--CGGGTTCTTCSEEECCSSCCC-CC--GGGTTCTTCSEEECCSSC-CCC-CG-GGTTCTTCCEEE
T ss_pred cccccccccccc-c--ccccchhhhhHHhhhhhhhhc-cc--cccccccccccccccccc-ccC-Cc-cccCCCCCCEEE
Confidence 999999888775 2 234667888999999998876 33 357788899999999887 553 33 355 88888887
Q ss_pred ccccccccCCcccccccccccCCCCCcEE
Q 040144 182 LQESLDMRSSSIYGHLTDQLGQFRNLVTF 210 (289)
Q Consensus 182 l~~~l~l~~~~~~~~~~~~l~~~~~L~~L 210 (289)
+ ++|.+++. + .++.+++|++|
T Consensus 179 l------s~N~i~~i-~-~l~~L~~L~~L 199 (199)
T d2omxa2 179 I------SSNKVSDI-S-VLAKLTNLESL 199 (199)
T ss_dssp C------CSSCCCCC-G-GGGGCTTCSEE
T ss_pred C------CCCCCCCC-c-cccCCCCCCcC
Confidence 6 78887753 3 47788888875
No 16
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.70 E-value=2.9e-16 Score=119.57 Aligned_cols=165 Identities=22% Similarity=0.277 Sum_probs=129.2
Q ss_pred CCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCC
Q 040144 24 NLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSL 103 (289)
Q Consensus 24 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L 103 (289)
.+.+|++|++++|.+..... +..+++|++|++++|.+...+ .+..+++|++|++++|.++.. ..+..+++|
T Consensus 44 ~L~~L~~L~l~~~~i~~l~~---l~~l~~L~~L~L~~n~i~~l~----~~~~l~~L~~L~l~~n~i~~l--~~l~~l~~L 114 (210)
T d1h6ta2 44 ELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIK----PLANLKNLGWLFLDENKVKDL--SSLKDLKKL 114 (210)
T ss_dssp HHHTCCEEECTTSCCCCCTT---GGGCTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCCG--GGGTTCTTC
T ss_pred HhcCccEEECcCCCCCCchh---HhhCCCCCEEeCCCccccCcc----ccccCcccccccccccccccc--ccccccccc
Confidence 46788999999887766543 677899999999999887754 356788999999999988765 357788999
Q ss_pred cEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeec
Q 040144 104 TMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINL 182 (289)
Q Consensus 104 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l 182 (289)
+.|++.+|.+. . ...+..++.++.+++++|.+.+ ...+..+++|+++++++|. +.+ ++ .+. +++|++|++
T Consensus 115 ~~L~l~~~~~~--~-~~~l~~l~~l~~l~~~~n~l~~---~~~~~~l~~L~~l~l~~n~-l~~-i~-~l~~l~~L~~L~L 185 (210)
T d1h6ta2 115 KSLSLEHNGIS--D-INGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQ-ISD-IV-PLAGLTKLQNLYL 185 (210)
T ss_dssp CEEECTTSCCC--C-CGGGGGCTTCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSC-CCC-CG-GGTTCTTCCEEEC
T ss_pred ccccccccccc--c-cccccccccccccccccccccc---ccccccccccccccccccc-ccc-cc-cccCCCCCCEEEC
Confidence 99999988875 2 2346778899999999998863 3456778899999999998 653 33 356 888988886
Q ss_pred cccccccCCcccccccccccCCCCCcEEEccC
Q 040144 183 QESLDMRSSSIYGHLTDQLGQFRNLVTFNLVN 214 (289)
Q Consensus 183 ~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 214 (289)
++|.++. ++ .++.+++|+.|++++
T Consensus 186 ------s~N~i~~-l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 186 ------SKNHISD-LR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp ------CSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred ------CCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence 7888874 44 588999999999874
No 17
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.68 E-value=6.3e-16 Score=117.62 Aligned_cols=146 Identities=21% Similarity=0.259 Sum_probs=77.1
Q ss_pred CCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCC
Q 040144 50 ISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLP 129 (289)
Q Consensus 50 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 129 (289)
+..|++|+++++.+.... ++..+++|++|++++|.++... .++.+++|+.|++++|.++ .++ .+..+++|+
T Consensus 45 L~~L~~L~l~~~~i~~l~----~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~--~l~-~l~~l~~L~ 115 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK--DLS-SLKDLKKLK 115 (210)
T ss_dssp HHTCCEEECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC--CGG-GGTTCTTCC
T ss_pred hcCccEEECcCCCCCCch----hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc--ccc-ccccccccc
Confidence 445566666665554432 3445566666666666555432 2445566666666666554 222 344556666
Q ss_pred EEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCc
Q 040144 130 FLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLV 208 (289)
Q Consensus 130 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~ 208 (289)
.+++.+|.+. .+ ..+..++.++.+++++|. +.+ +..+. +++|+.+++ ++|.+++..+ ++.+++|+
T Consensus 116 ~L~l~~~~~~-~~--~~l~~l~~l~~l~~~~n~-l~~--~~~~~~l~~L~~l~l------~~n~l~~i~~--l~~l~~L~ 181 (210)
T d1h6ta2 116 SLSLEHNGIS-DI--NGLVHLPQLESLYLGNNK-ITD--ITVLSRLTKLDTLSL------EDNQISDIVP--LAGLTKLQ 181 (210)
T ss_dssp EEECTTSCCC-CC--GGGGGCTTCCEEECCSSC-CCC--CGGGGGCTTCSEEEC------CSSCCCCCGG--GTTCTTCC
T ss_pred cccccccccc-cc--cccccccccccccccccc-ccc--ccccccccccccccc------cccccccccc--ccCCCCCC
Confidence 6666666554 22 235555566666666555 331 22233 555555554 5555553222 55566666
Q ss_pred EEEccCCeee
Q 040144 209 TFNLVNNSIV 218 (289)
Q Consensus 209 ~L~l~~n~~~ 218 (289)
.|++++|.++
T Consensus 182 ~L~Ls~N~i~ 191 (210)
T d1h6ta2 182 NLYLSKNHIS 191 (210)
T ss_dssp EEECCSSCCC
T ss_pred EEECCCCCCC
Confidence 6666666554
No 18
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.67 E-value=9.1e-16 Score=115.74 Aligned_cols=148 Identities=25% Similarity=0.337 Sum_probs=95.9
Q ss_pred CCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCC
Q 040144 49 GISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHL 128 (289)
Q Consensus 49 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 128 (289)
.+.++++|+++++.+.... .+..+++|++|++++|.++... .+..+++|+.|++++|.+. .++ .+..++.|
T Consensus 38 ~l~~l~~L~l~~~~i~~l~----~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~--~~~-~l~~l~~L 108 (199)
T d2omxa2 38 DLDQVTTLQADRLGIKSID----GVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA--DIT-PLANLTNL 108 (199)
T ss_dssp HHTTCCEEECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC--CCG-GGTTCTTC
T ss_pred HhcCCCEEECCCCCCCCcc----ccccCCCcCcCccccccccCcc--cccCCcccccccccccccc--ccc-cccccccc
Confidence 4567777777777766542 4566777777777777776643 3667777777777777664 222 35667777
Q ss_pred CEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCC
Q 040144 129 PFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNL 207 (289)
Q Consensus 129 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L 207 (289)
++++++++.... . ..+..+++|+.+++++|. +. ..+ .+. +++|+.|++ .+|.+++.. .++++++|
T Consensus 109 ~~L~l~~~~~~~-~--~~~~~l~~L~~L~l~~n~-l~-~~~-~l~~~~~L~~L~l------~~n~l~~l~--~l~~l~~L 174 (199)
T d2omxa2 109 TGLTLFNNQITD-I--DPLKNLTNLNRLELSSNT-IS-DIS-ALSGLTSLQQLNF------SSNQVTDLK--PLANLTTL 174 (199)
T ss_dssp SEEECCSSCCCC-C--GGGTTCTTCSEEECCSSC-CC-CCG-GGTTCTTCSEEEC------CSSCCCCCG--GGTTCTTC
T ss_pred cccccccccccc-c--cccchhhhhHHhhhhhhh-hc-ccc-ccccccccccccc------ccccccCCc--cccCCCCC
Confidence 777777776652 2 346667777777777776 43 222 344 667777665 666666432 26677777
Q ss_pred cEEEccCCeeee
Q 040144 208 VTFNLVNNSIVG 219 (289)
Q Consensus 208 ~~L~l~~n~~~~ 219 (289)
+.|++++|++++
T Consensus 175 ~~L~ls~N~i~~ 186 (199)
T d2omxa2 175 ERLDISSNKVSD 186 (199)
T ss_dssp CEEECCSSCCCC
T ss_pred CEEECCCCCCCC
Confidence 777777777663
No 19
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.67 E-value=3.6e-17 Score=130.45 Aligned_cols=184 Identities=18% Similarity=0.154 Sum_probs=105.4
Q ss_pred CCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEEeccCC-CCCCcchhhHhhcCCC
Q 040144 49 GISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHN-QFDNSFILSWVFALSH 127 (289)
Q Consensus 49 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~ 127 (289)
...+|++|+++++.+.... +...+.++++|++|.+.+|.+.......++.+++|+.|+++++ .+++..+......+++
T Consensus 44 ~~~~L~~LdLs~~~i~~~~-l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~ 122 (284)
T d2astb2 44 SPFRVQHMDLSNSVIEVST-LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122 (284)
T ss_dssp CCBCCCEEECTTCEECHHH-HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred cCCCCCEEECCCCccCHHH-HHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHh
Confidence 4557777777777655431 1224567777888887777766554555666777777887774 4553333444456777
Q ss_pred CCEEEccCce-eeeeeChhhhc-CCCCccEEeCCCCCc-ccCC-CCcccc-ccCcceeeccccccccCC-cccccccccc
Q 040144 128 LPFLDLGFNN-FQGTIDLEALG-NLTSINRLDLSLNTG-LTGR-IPRSMA-LCNLKSINLQESLDMRSS-SIYGHLTDQL 201 (289)
Q Consensus 128 L~~L~l~~n~-~~~~~~~~~~~-~~~~L~~L~l~~n~~-~~~~-~~~~~~-~~~L~~L~l~~~l~l~~~-~~~~~~~~~l 201 (289)
|++|++++|. ++.......+. ..+.|+.++++++.. +.+. +..... +++|++|++ ++| .+++.....+
T Consensus 123 L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L------~~~~~itd~~~~~l 196 (284)
T d2astb2 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL------SDSVMLKNDCFQEF 196 (284)
T ss_dssp CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC------TTCTTCCGGGGGGG
T ss_pred ccccccccccccccccchhhhcccccccchhhhccccccccccccccccccccccccccc------ccccCCCchhhhhh
Confidence 7888777763 33111022232 245677777776430 1211 112223 677777776 444 3454555566
Q ss_pred cCCCCCcEEEccCC-eeeecCCCceEEEeecceeeeeeccccccccccccEEEecCC
Q 040144 202 GQFRNLVTFNLVNN-SIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGN 257 (289)
Q Consensus 202 ~~~~~L~~L~l~~n-~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n 257 (289)
+.+++|++|++++| .+++. ... .++++++|+.|++.++
T Consensus 197 ~~~~~L~~L~L~~C~~i~~~-----------------~l~-~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 197 FQLNYLQHLSLSRCYDIIPE-----------------TLL-ELGEIPTLKTLQVFGI 235 (284)
T ss_dssp GGCTTCCEEECTTCTTCCGG-----------------GGG-GGGGCTTCCEEECTTS
T ss_pred cccCcCCEEECCCCCCCChH-----------------HHH-HHhcCCCCCEEeeeCC
Confidence 67777777777775 34422 112 3455666666666665
No 20
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}
Probab=99.66 E-value=1.1e-14 Score=119.34 Aligned_cols=243 Identities=22% Similarity=0.190 Sum_probs=151.1
Q ss_pred CCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEE
Q 040144 3 NLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVEL 82 (289)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 82 (289)
++++|+|+++.++ .+|+. .++|++|++++|.+..++. .+.+|++|+++++.+.....+ .+.|++|
T Consensus 39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~~lp~-----~~~~L~~L~l~~n~l~~l~~l------p~~L~~L 103 (353)
T d1jl5a_ 39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLTELPE-----LPQSLKSLLVDNNNLKALSDL------PPLLEYL 103 (353)
T ss_dssp TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCSSCCC-----CCTTCCEEECCSSCCSCCCSC------CTTCCEE
T ss_pred CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCccccc-----chhhhhhhhhhhcccchhhhh------ccccccc
Confidence 5889999999987 46653 5689999999988776642 256899999999987765431 1469999
Q ss_pred EccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCC
Q 040144 83 RLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNT 162 (289)
Q Consensus 83 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 162 (289)
++++|.+.... .++.+++|+.|+++++.+. ..+. ....+..+.+..+.... ...+..++.++.+.++++.
T Consensus 104 ~L~~n~l~~lp--~~~~l~~L~~L~l~~~~~~--~~~~---~~~~l~~l~~~~~~~~~---~~~l~~l~~l~~L~l~~n~ 173 (353)
T d1jl5a_ 104 GVSNNQLEKLP--ELQNSSFLKIIDVDNNSLK--KLPD---LPPSLEFIAAGNNQLEE---LPELQNLPFLTAIYADNNS 173 (353)
T ss_dssp ECCSSCCSSCC--CCTTCTTCCEEECCSSCCS--CCCC---CCTTCCEEECCSSCCSS---CCCCTTCTTCCEEECCSSC
T ss_pred ccccccccccc--chhhhccceeecccccccc--cccc---ccccccchhhccccccc---cccccccccceeccccccc
Confidence 99999988763 3567899999999888764 2221 23455566655544331 2334455666666666554
Q ss_pred cccC-------------------CCCcccc-ccCcceeeccccccccCCcccccccccc-----------------cCCC
Q 040144 163 GLTG-------------------RIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQL-----------------GQFR 205 (289)
Q Consensus 163 ~~~~-------------------~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l-----------------~~~~ 205 (289)
... ..+. .. ++.|+.+.+ ++|..... +... ...+
T Consensus 174 -~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~l~~L~~l~l------~~n~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ 244 (353)
T d1jl5a_ 174 -LKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYA------DNNLLKTL-PDLPPSLEALNVRDNYLTDLPELPQ 244 (353)
T ss_dssp -CSSCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEEC------CSSCCSSC-CSCCTTCCEEECCSSCCSCCCCCCT
T ss_pred -cccccccccccccccccccccccccc-cccccccccccc------cccccccc-ccccccccccccccccccccccccc
Confidence 221 1121 22 566666665 33333211 1100 0112
Q ss_pred CCcEEEccCCee--------------------eec---CCCceEEEeecceeeeeeccccccccccccEEEecCCeeeec
Q 040144 206 NLVTFNLVNNSI--------------------VGF---IPWSFELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLE 262 (289)
Q Consensus 206 ~L~~L~l~~n~~--------------------~~~---~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 262 (289)
.+...++..+.+ .+. .|...+|++++|.++ .+|. .+++|++|++++|+++.
T Consensus 245 ~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~----~~~~L~~L~L~~N~L~~- 318 (353)
T d1jl5a_ 245 SLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA----LPPRLERLIASFNHLAE- 318 (353)
T ss_dssp TCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-
T ss_pred cccccccccccccccccccchhcccccccCccccccccCCCCCEEECCCCccC-cccc----ccCCCCEEECCCCcCCc-
Confidence 233333332222 110 122228899988887 6765 35788899999999884
Q ss_pred cCCCccccccccEEecccccCccCCCC
Q 040144 263 VKHDWIPHFQLVALGLHSCYIGSRFPL 289 (289)
Q Consensus 263 ~~~~~~~~~~L~~l~l~~n~~~~~~p~ 289 (289)
+|.. +++|+.|++++|+++ .+|+
T Consensus 319 l~~~---~~~L~~L~L~~N~L~-~lp~ 341 (353)
T d1jl5a_ 319 VPEL---PQNLKQLHVEYNPLR-EFPD 341 (353)
T ss_dssp CCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred cccc---cCCCCEEECcCCcCC-CCCc
Confidence 5643 457899999999986 6663
No 21
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.65 E-value=2e-16 Score=126.15 Aligned_cols=220 Identities=21% Similarity=0.150 Sum_probs=149.3
Q ss_pred CCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCc-cCCCCcc-cccCC
Q 040144 23 GNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQ-LQHFSPL-ATVNF 100 (289)
Q Consensus 23 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~-~l~~~ 100 (289)
....+|++|++++|.+........+..+++|++|+++++.+... ....+..+++|++|++++|. ++..... ....+
T Consensus 43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~--~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~ 120 (284)
T d2astb2 43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP--IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120 (284)
T ss_dssp CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHH--HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcH--HHHHHhcCCCCcCccccccccccccccchhhHHH
Confidence 34568999999998765443333367899999999999986653 22367788999999999973 4432211 23468
Q ss_pred CCCcEEeccCC-CCCCcchhhHhhc-CCCCCEEEccCce--eeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-cc
Q 040144 101 SSLTMLDLSHN-QFDNSFILSWVFA-LSHLPFLDLGFNN--FQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LC 175 (289)
Q Consensus 101 ~~L~~L~l~~~-~~~~~~~~~~~~~-~~~L~~L~l~~n~--~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~ 175 (289)
++|++|++++| .+++......+.. .+.|+.|+++++. ++..........+++|++|++++|..+++.....+. ++
T Consensus 121 ~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~ 200 (284)
T d2astb2 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 200 (284)
T ss_dssp TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred HhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccC
Confidence 99999999986 4553333444444 4789999998763 332211334457899999999987636666666777 89
Q ss_pred CcceeeccccccccCC-cccccccccccCCCCCcEEEccCCeeeecCCCceEEEeecceeeeeeccccccccccccEEEe
Q 040144 176 NLKSINLQESLDMRSS-SIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFELHFANLIEMSWFRV 254 (289)
Q Consensus 176 ~L~~L~l~~~l~l~~~-~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l 254 (289)
+|++|++ ++| .+++.....++.+++|+.|+++++ +.+. .+.. ....+++|+ +
T Consensus 201 ~L~~L~L------~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~----------------~l~~-l~~~lp~L~---i 253 (284)
T d2astb2 201 YLQHLSL------SRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG----------------TLQL-LKEALPHLQ---I 253 (284)
T ss_dssp TCCEEEC------TTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT----------------CHHH-HHHHSTTSE---E
T ss_pred cCCEEEC------CCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHH----------------HHHH-HHHhCcccc---c
Confidence 9999987 554 556556667889999999999886 3311 1222 223455554 5
Q ss_pred cCCeeeeccCCCccccc
Q 040144 255 GGNQLTLEVKHDWIPHF 271 (289)
Q Consensus 255 ~~n~~~~~~~~~~~~~~ 271 (289)
..+++++..+..++...
T Consensus 254 ~~~~ls~~~~~~~~~~~ 270 (284)
T d2astb2 254 NCSHFTTIARPTIGNKK 270 (284)
T ss_dssp SCCCSCCTTCSSCSSTT
T ss_pred cCccCCCCCCCccCccc
Confidence 67778776666665543
No 22
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}
Probab=99.61 E-value=3.4e-14 Score=116.27 Aligned_cols=241 Identities=20% Similarity=0.145 Sum_probs=136.7
Q ss_pred CCCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCcc
Q 040144 1 MGNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLV 80 (289)
Q Consensus 1 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 80 (289)
.++|++|++++|+++ .+|.. ..+|++|++++|....+.. + .+.|++|++++|.+...+. ...+++|+
T Consensus 57 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l~~---l--p~~L~~L~L~~n~l~~lp~----~~~l~~L~ 123 (353)
T d1jl5a_ 57 PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKALSD---L--PPLLEYLGVSNNQLEKLPE----LQNSSFLK 123 (353)
T ss_dssp CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCCCS---C--CTTCCEEECCSSCCSSCCC----CTTCTTCC
T ss_pred CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchhhh---h--ccccccccccccccccccc----hhhhccce
Confidence 368999999999998 56754 4588999999987665542 1 2469999999998877653 46788999
Q ss_pred EEEccCCccCCCCcc------------------cccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeee
Q 040144 81 ELRLSNCQLQHFSPL------------------ATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTI 142 (289)
Q Consensus 81 ~L~l~~~~l~~~~~~------------------~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 142 (289)
++++.++.+...... .+..++.++.+++..+... ..+. .....+.+...++.+. .+
T Consensus 124 ~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~--~~~~---~~~~~~~l~~~~~~~~-~~ 197 (353)
T d1jl5a_ 124 IIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK--KLPD---LPLSLESIVAGNNILE-EL 197 (353)
T ss_dssp EEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS--SCCC---CCTTCCEEECCSSCCS-SC
T ss_pred eeccccccccccccccccccchhhccccccccccccccccceeccccccccc--cccc---cccccccccccccccc-cc
Confidence 999998876543211 1223344455555444332 0000 0001111111111111 11
Q ss_pred ChhhhcCCCCccEEeCCCCCcccCCCCcccc------------------ccCcceeeccc--------------cccccC
Q 040144 143 DLEALGNLTSINRLDLSLNTGLTGRIPRSMA------------------LCNLKSINLQE--------------SLDMRS 190 (289)
Q Consensus 143 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~------------------~~~L~~L~l~~--------------~l~l~~ 190 (289)
..+..++.++.+++++|. .. ..+.... ...+....+.. ...+..
T Consensus 198 --~~~~~l~~L~~l~l~~n~-~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~ 273 (353)
T d1jl5a_ 198 --PELQNLPFLTTIYADNNL-LK-TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273 (353)
T ss_dssp --CCCTTCTTCCEEECCSSC-CS-SCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCS
T ss_pred --cccccccccccccccccc-cc-ccccccccccccccccccccccccccccccccccccccccccccccchhccccccc
Confidence 123344555666655554 22 1111110 11111111100 011111
Q ss_pred CcccccccccccCCCCCcEEEccCCeeeecCCCce----EEEeecceeeeeeccccccccccccEEEecCCeeeeccCCC
Q 040144 191 SSIYGHLTDQLGQFRNLVTFNLVNNSIVGFIPWSF----ELHIYDNKLNVTLFELHFANLIEMSWFRVGGNQLTLEVKHD 266 (289)
Q Consensus 191 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~----~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 266 (289)
+ .+......+++|++|++++|++. .+|..+ .|++++|+++ ++|. .+++|++|++++|+++. +|+.
T Consensus 274 ~----~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~L~~L~L~~N~L~-~l~~----~~~~L~~L~L~~N~L~~-lp~~ 342 (353)
T d1jl5a_ 274 N----EIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLIASFNHLA-EVPE----LPQNLKQLHVEYNPLRE-FPDI 342 (353)
T ss_dssp S----CCSEECCCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSS-CCCC
T ss_pred C----ccccccccCCCCCEEECCCCccC-ccccccCCCCEEECCCCcCC-cccc----ccCCCCEEECcCCcCCC-CCcc
Confidence 1 12222334679999999999987 444444 8999999998 6776 35689999999999884 6664
Q ss_pred ccccccccEEec
Q 040144 267 WIPHFQLVALGL 278 (289)
Q Consensus 267 ~~~~~~L~~l~l 278 (289)
. .+|+.|.+
T Consensus 343 ~---~~L~~L~~ 351 (353)
T d1jl5a_ 343 P---ESVEDLRM 351 (353)
T ss_dssp C---TTCCEEEC
T ss_pred c---cccCeeEC
Confidence 3 34555554
No 23
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.59 E-value=2.9e-15 Score=112.27 Aligned_cols=128 Identities=21% Similarity=0.223 Sum_probs=78.7
Q ss_pred cEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCC
Q 040144 80 VELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLS 159 (289)
Q Consensus 80 ~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 159 (289)
++++.++++++.++. .+ .+++++|++++|.++.......+..+++|++|++++|.+.... +..+..+++|++|+++
T Consensus 11 ~~v~Cs~~~L~~iP~-~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~-~~~~~~~~~L~~L~Ls 86 (192)
T d1w8aa_ 11 TTVDCTGRGLKEIPR-DI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSSCCS-CC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECC
T ss_pred CEEEEeCCCcCccCC-CC--CCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccc-ccccccccccceeeec
Confidence 345555555554422 22 2456666666666641122334556666666776666665332 5566666667777777
Q ss_pred CCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCCCcEEEccCCeee
Q 040144 160 LNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIV 218 (289)
Q Consensus 160 ~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 218 (289)
+|. +....+..|. +++|+.|++ ++|.++...+.+|..+++|+++++++|.+.
T Consensus 87 ~N~-l~~l~~~~F~~l~~L~~L~L------~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 87 ENK-IKEISNKMFLGLHQLKTLNL------YDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCC-CCEECSSSSTTCTTCCEEEC------CSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred ccc-ccccCHHHHhCCCccccccc------CCccccccCHHHhcCCcccccccccccccc
Confidence 666 5544444555 666666665 666777667777888888888888888776
No 24
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.58 E-value=2.9e-17 Score=139.51 Aligned_cols=89 Identities=22% Similarity=0.136 Sum_probs=61.9
Q ss_pred CCCCcEEEccCCccccc----CCCccCCCCCCcEEeCCCccccccCCCc---cc-CCCCcccEEeccCcccccc--chhh
Q 040144 1 MGNLRYLNFSKTRICGI----IPQQLGNLSNLQFLDLSSKYLLYVDNFL---WL-SGISLLEHLDLRYVNLSIA--FDWL 70 (289)
Q Consensus 1 ~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~-~~l~~L~~L~l~~~~~~~~--~~~~ 70 (289)
+++++.|+|.+|.++.. ++..+..+++|++|++++|.+.+.+... .+ ....+|++|++++|.+... ..+.
T Consensus 26 l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~ 105 (460)
T d1z7xw1 26 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 105 (460)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccccccccc
Confidence 46788999999987742 3455678889999999988764322111 12 2245799999999987654 2233
Q ss_pred HhhhcCCCccEEEccCCcc
Q 040144 71 MVANKLLSLVELRLSNCQL 89 (289)
Q Consensus 71 ~~~~~~~~L~~L~l~~~~l 89 (289)
..+..+++|++|++.+|.+
T Consensus 106 ~~l~~~~~L~~L~L~~N~i 124 (460)
T d1z7xw1 106 STLRTLPTLQELHLSDNLL 124 (460)
T ss_dssp HHTTSCTTCCEEECCSSBC
T ss_pred chhhccccccccccccccc
Confidence 4567788999999988865
No 25
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=99.57 E-value=9.4e-16 Score=125.66 Aligned_cols=192 Identities=15% Similarity=0.059 Sum_probs=98.6
Q ss_pred CccCCCCCCcEEeCCCccccccCC---CcccCCCCcccEEeccCcccccc--------chhhHhhhcCCCccEEEccCCc
Q 040144 20 QQLGNLSNLQFLDLSSKYLLYVDN---FLWLSGISLLEHLDLRYVNLSIA--------FDWLMVANKLLSLVELRLSNCQ 88 (289)
Q Consensus 20 ~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~--------~~~~~~~~~~~~L~~L~l~~~~ 88 (289)
.++.+...+++|++++|.+...+. ...+...+.|+.++++++..... ..+...+..+++|++|++.+|.
T Consensus 25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~ 104 (344)
T d2ca6a1 25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 104 (344)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence 334455666666666665433211 11134556666666665532211 1122234455667777777666
Q ss_pred cCCCCcc----cccCCCCCcEEeccCCCCCCcchh---h---------HhhcCCCCCEEEccCceeeee----eChhhhc
Q 040144 89 LQHFSPL----ATVNFSSLTMLDLSHNQFDNSFIL---S---------WVFALSHLPFLDLGFNNFQGT----IDLEALG 148 (289)
Q Consensus 89 l~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~---~---------~~~~~~~L~~L~l~~n~~~~~----~~~~~~~ 148 (289)
++..... .+...++|+.|++++|.+.+.... . .....+.++.+.+++|.+... + ...+.
T Consensus 105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l-~~~l~ 183 (344)
T d2ca6a1 105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW-AKTFQ 183 (344)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH-HHHHH
T ss_pred cccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccc-cchhh
Confidence 6553222 223456677777766655311000 0 012345666777766665421 1 23344
Q ss_pred CCCCccEEeCCCCCcccCC-----CCcccc-ccCcceeeccccccccCCccccc----ccccccCCCCCcEEEccCCeee
Q 040144 149 NLTSINRLDLSLNTGLTGR-----IPRSMA-LCNLKSINLQESLDMRSSSIYGH----LTDQLGQFRNLVTFNLVNNSIV 218 (289)
Q Consensus 149 ~~~~L~~L~l~~n~~~~~~-----~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~ 218 (289)
..+.++++++++|. +... +...+. ++.|+.|++ ++|.++.. +...+..+++|++|++++|.++
T Consensus 184 ~~~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~L------s~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~ 256 (344)
T d2ca6a1 184 SHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDL------QDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 256 (344)
T ss_dssp HCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEEC------CSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred hhhhhccccccccc-ccccccccchhhhhcchhhhccccc------ccccccccccccccccccccccchhhhhhcCccC
Confidence 55667777777766 4321 122233 556666654 56665432 3344566777777777777766
Q ss_pred e
Q 040144 219 G 219 (289)
Q Consensus 219 ~ 219 (289)
+
T Consensus 257 ~ 257 (344)
T d2ca6a1 257 A 257 (344)
T ss_dssp H
T ss_pred c
Confidence 4
No 26
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.57 E-value=3.2e-15 Score=112.06 Aligned_cols=107 Identities=22% Similarity=0.220 Sum_probs=88.8
Q ss_pred CcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceee
Q 040144 103 LTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSIN 181 (289)
Q Consensus 103 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~ 181 (289)
.+.++.+++.++ .+|..+ .+++++|++++|.+++..+...|..+++|+.|++++|. +....+..+. +++|++|+
T Consensus 10 ~~~v~Cs~~~L~--~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~-i~~~~~~~~~~~~~L~~L~ 84 (192)
T d1w8aa_ 10 GTTVDCTGRGLK--EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TTEEECTTSCCS--SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEE
T ss_pred CCEEEEeCCCcC--ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccc-cccccccccccccccceee
Confidence 357888888885 566544 36899999999999755546778899999999999998 7766677777 89999888
Q ss_pred ccccccccCCcccccccccccCCCCCcEEEccCCeeeec
Q 040144 182 LQESLDMRSSSIYGHLTDQLGQFRNLVTFNLVNNSIVGF 220 (289)
Q Consensus 182 l~~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 220 (289)
+ ++|.+....+.+|.++++|++|+|++|.+++.
T Consensus 85 L------s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i 117 (192)
T d1w8aa_ 85 L------GENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117 (192)
T ss_dssp C------CSCCCCEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred e------ccccccccCHHHHhCCCcccccccCCcccccc
Confidence 6 89999988888999999999999999999843
No 27
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.53 E-value=1.3e-16 Score=135.52 Aligned_cols=113 Identities=20% Similarity=0.133 Sum_probs=80.8
Q ss_pred CCCcEEEccCCcccccC-CCccCCCCCCcEEeCCCccccccCC---CcccCCCCcccEEeccCcccccc--chhhHhhh-
Q 040144 2 GNLRYLNFSKTRICGII-PQQLGNLSNLQFLDLSSKYLLYVDN---FLWLSGISLLEHLDLRYVNLSIA--FDWLMVAN- 74 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~- 74 (289)
++|++|+++++++++.. ...+..+++++.|++.+|.+...+. ...+..++.|++|++++|.+... ..+...+.
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~ 81 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 81 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence 36899999999997532 3335567899999999997654321 11246789999999999988653 22222332
Q ss_pred cCCCccEEEccCCccCCCC----cccccCCCCCcEEeccCCCCC
Q 040144 75 KLLSLVELRLSNCQLQHFS----PLATVNFSSLTMLDLSHNQFD 114 (289)
Q Consensus 75 ~~~~L~~L~l~~~~l~~~~----~~~l~~~~~L~~L~l~~~~~~ 114 (289)
....|++|++++|.++... +..+..+++|++|++++|.++
T Consensus 82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~ 125 (460)
T d1z7xw1 82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 125 (460)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred CCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence 2357999999999987643 234567899999999998764
No 28
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.52 E-value=2e-14 Score=104.23 Aligned_cols=112 Identities=18% Similarity=0.099 Sum_probs=57.4
Q ss_pred cCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCC
Q 040144 22 LGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFS 101 (289)
Q Consensus 22 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 101 (289)
+.++..+++|++++|.+..++.. +..+++|++|++++|.+.... .+..+++|++|++++|.+....+..+..++
T Consensus 14 ~~n~~~lr~L~L~~n~I~~i~~~--~~~l~~L~~L~Ls~N~i~~l~----~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~ 87 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIPVIENL--GATLDQFDAIDFSDNEIRKLD----GFPLLRRLKTLLVNNNRICRIGEGLDQALP 87 (162)
T ss_dssp EECTTSCEEEECTTSCCCSCCCG--GGGTTCCSEEECCSSCCCEEC----CCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred ccCcCcCcEEECCCCCCCccCcc--ccccccCCEEECCCCCCCccC----CcccCcchhhhhcccccccCCCcccccccc
Confidence 44555666666666655554321 244556666666666555432 344555566666666555554433344455
Q ss_pred CCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceee
Q 040144 102 SLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQ 139 (289)
Q Consensus 102 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 139 (289)
+|+.|++++|.+++-.....+..+++|+++++.+|.+.
T Consensus 88 ~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~ 125 (162)
T d1a9na_ 88 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 125 (162)
T ss_dssp TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred ccccceeccccccccccccccccccccchhhcCCCccc
Confidence 55555555555541111123444555555555555543
No 29
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=99.50 E-value=6.6e-15 Score=120.52 Aligned_cols=232 Identities=16% Similarity=0.117 Sum_probs=160.2
Q ss_pred cCCCCcccEEeccCcccccc--chhhHhhhcCCCccEEEccCCccCCCC----------cccccCCCCCcEEeccCCCCC
Q 040144 47 LSGISLLEHLDLRYVNLSIA--FDWLMVANKLLSLVELRLSNCQLQHFS----------PLATVNFSSLTMLDLSHNQFD 114 (289)
Q Consensus 47 ~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~l~~~~----------~~~l~~~~~L~~L~l~~~~~~ 114 (289)
+.....++.|++++|.+... ..+...+...+.|+.+.+.++...... ...+..+++|+.|++++|.++
T Consensus 27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 106 (344)
T d2ca6a1 27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 106 (344)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccc
Confidence 45678899999999987554 233445677899999999987654321 122456789999999999887
Q ss_pred Ccc---hhhHhhcCCCCCEEEccCceeeeeeC---hhh---------hcCCCCccEEeCCCCCcccCCC----Ccccc-c
Q 040144 115 NSF---ILSWVFALSHLPFLDLGFNNFQGTID---LEA---------LGNLTSINRLDLSLNTGLTGRI----PRSMA-L 174 (289)
Q Consensus 115 ~~~---~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~---------~~~~~~L~~L~l~~n~~~~~~~----~~~~~-~ 174 (289)
+.. +...+...++|++|++++|.+..... ..+ ....+.++.+.+++|. +.... ...+. .
T Consensus 107 ~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~-i~~~~~~~l~~~l~~~ 185 (344)
T d2ca6a1 107 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQSH 185 (344)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHHHC
T ss_pred cccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc-ccccccccccchhhhh
Confidence 332 23345567899999999998742110 011 1346789999999987 54332 22344 6
Q ss_pred cCcceeeccccccccCCccccc-----ccccccCCCCCcEEEccCCeeeecC-----------CCceEEEeecceeeeee
Q 040144 175 CNLKSINLQESLDMRSSSIYGH-----LTDQLGQFRNLVTFNLVNNSIVGFI-----------PWSFELHIYDNKLNVTL 238 (289)
Q Consensus 175 ~~L~~L~l~~~l~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~n~~~~~~-----------~~~~~L~l~~n~~~~~~ 238 (289)
+.|+++++ +.|.+... +...+..+++|+.|++++|.++... +....|++++|.+++.-
T Consensus 186 ~~L~~L~L------~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g 259 (344)
T d2ca6a1 186 RLLHTVKM------VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 259 (344)
T ss_dssp TTCCEEEC------CSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred hhhccccc------ccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchh
Confidence 77888876 77877642 3455778999999999999986431 22228999999987432
Q ss_pred ccc---ccc--ccccccEEEecCCeeeeccCC----Ccc-ccccccEEecccccCcc
Q 040144 239 FEL---HFA--NLIEMSWFRVGGNQLTLEVKH----DWI-PHFQLVALGLHSCYIGS 285 (289)
Q Consensus 239 ~~~---~~~--~~~~L~~l~l~~n~~~~~~~~----~~~-~~~~L~~l~l~~n~~~~ 285 (289)
... .+. ..+.|++|++++|.+++.... .+. ++++|+.|++++|++..
T Consensus 260 ~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 260 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred hHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence 220 222 246799999999999865333 332 56789999999999863
No 30
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.49 E-value=7.3e-14 Score=101.23 Aligned_cols=126 Identities=21% Similarity=0.201 Sum_probs=102.0
Q ss_pred CCCcEEEccCCcccccCCCccCCCCCCcEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccE
Q 040144 2 GNLRYLNFSKTRICGIIPQQLGNLSNLQFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVE 81 (289)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 81 (289)
.++++|+|++|.|+. ++..+..+++|+.|++++|.+..++. +..+++|++|++++|.+...+. ..+..+++|++
T Consensus 18 ~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l~~---~~~l~~L~~L~ls~N~i~~l~~--~~~~~l~~L~~ 91 (162)
T d1a9na_ 18 VRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKLDG---FPLLRRLKTLLVNNNRICRIGE--GLDQALPDLTE 91 (162)
T ss_dssp TSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEECC---CCCCSSCCEEECCSSCCCEECS--CHHHHCTTCCE
T ss_pred CcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCccCC---cccCcchhhhhcccccccCCCc--ccccccccccc
Confidence 478999999999985 56666889999999999998877643 6789999999999999988743 14567999999
Q ss_pred EEccCCccCCCCc-ccccCCCCCcEEeccCCCCCCcc--hhhHhhcCCCCCEEEc
Q 040144 82 LRLSNCQLQHFSP-LATVNFSSLTMLDLSHNQFDNSF--ILSWVFALSHLPFLDL 133 (289)
Q Consensus 82 L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l 133 (289)
|++++|.+..... ..+..+++|+.+++++|.++... -...+..+++|+.||.
T Consensus 92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~ 146 (162)
T d1a9na_ 92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 146 (162)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred ceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence 9999999987633 46788999999999999885211 1235677899998873
No 31
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.45 E-value=5e-13 Score=92.16 Aligned_cols=17 Identities=41% Similarity=0.436 Sum_probs=7.1
Q ss_pred cCCCCCCcEEeCCCccc
Q 040144 22 LGNLSNLQFLDLSSKYL 38 (289)
Q Consensus 22 l~~l~~L~~L~l~~~~~ 38 (289)
+.++++|++|++++|.+
T Consensus 16 l~~l~~L~~L~ls~N~l 32 (124)
T d1dcea3 16 LEQLLLVTHLDLSHNRL 32 (124)
T ss_dssp GGGGTTCCEEECCSSCC
T ss_pred cccCCCCCEEECCCCcc
Confidence 34444444444444433
No 32
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.43 E-value=7.3e-13 Score=91.32 Aligned_cols=120 Identities=24% Similarity=0.246 Sum_probs=95.6
Q ss_pred cEEeCCCccccccCCCcccCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEEec
Q 040144 29 QFLDLSSKYLLYVDNFLWLSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDL 108 (289)
Q Consensus 29 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l 108 (289)
|.|++++|.+...+. +..++.|++|++++|.+...+. .+..+++|++|++++|.++.. +.+..+++|+.+++
T Consensus 1 R~L~Ls~n~l~~l~~---l~~l~~L~~L~ls~N~l~~lp~---~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l 72 (124)
T d1dcea3 1 RVLHLAHKDLTVLCH---LEQLLLVTHLDLSHNRLRALPP---ALAALRCLEVLQASDNALENV--DGVANLPRLQELLL 72 (124)
T ss_dssp SEEECTTSCCSSCCC---GGGGTTCCEEECCSSCCCCCCG---GGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEEC
T ss_pred CEEEcCCCCCCCCcc---cccCCCCCEEECCCCccCcchh---hhhhhhccccccccccccccc--CccccccccCeEEC
Confidence 578999988876653 6789999999999999988765 678899999999999999876 35889999999999
Q ss_pred cCCCCCCcchhhHhhcCCCCCEEEccCceeeee--eChhhhcCCCCccEE
Q 040144 109 SHNQFDNSFILSWVFALSHLPFLDLGFNNFQGT--IDLEALGNLTSINRL 156 (289)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~~L~~L 156 (289)
++|.++.......++.+++|+.+++++|.+.+. ........+++++.+
T Consensus 73 ~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 73 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence 999997333334577899999999999988632 213344556777665
No 33
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=99.29 E-value=3.4e-14 Score=106.61 Aligned_cols=108 Identities=22% Similarity=0.181 Sum_probs=66.9
Q ss_pred cCCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCC
Q 040144 47 LSGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALS 126 (289)
Q Consensus 47 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 126 (289)
+..+++|++|++++|.+.... .+..+++|++|++++|.+..+. .....+++|+.|++++|.++ .+ ..+..++
T Consensus 44 l~~L~~L~~L~Ls~n~I~~i~----~l~~l~~L~~L~Ls~N~i~~i~-~~~~~~~~L~~L~l~~N~i~--~l-~~~~~l~ 115 (198)
T d1m9la_ 44 LSTLKACKHLALSTNNIEKIS----SLSGMENLRILSLGRNLIKKIE-NLDAVADTLEELWISYNQIA--SL-SGIEKLV 115 (198)
T ss_dssp HHHTTTCCEEECSEEEESCCC----CHHHHTTCCEEECCEEEECSCS-SHHHHHHHCCEEECSEEECC--CH-HHHHHHH
T ss_pred HhcccccceeECcccCCCCcc----cccCCccccChhhccccccccc-cccccccccccccccccccc--cc-ccccccc
Confidence 455667777777777666542 3556667777777777766542 22233456777777777765 22 2355667
Q ss_pred CCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCC
Q 040144 127 HLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNT 162 (289)
Q Consensus 127 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 162 (289)
+|+.|++++|.++.......+..+++|+.|++++|+
T Consensus 116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~ 151 (198)
T d1m9la_ 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred cccccccccchhccccccccccCCCccceeecCCCc
Confidence 777777777776521111356677777777777776
No 34
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=99.26 E-value=3.1e-13 Score=101.30 Aligned_cols=130 Identities=22% Similarity=0.199 Sum_probs=85.2
Q ss_pred chhhHhhcCCCCCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccc
Q 040144 117 FILSWVFALSHLPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYG 195 (289)
Q Consensus 117 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~ 195 (289)
.++..+..+++|++|++++|++. .+ + .+..+++|+.|++++|. +. .+|.... ++.|+.|++ ++|.++.
T Consensus 39 ~l~~sl~~L~~L~~L~Ls~n~I~-~i-~-~l~~l~~L~~L~Ls~N~-i~-~i~~~~~~~~~L~~L~l------~~N~i~~ 107 (198)
T d1m9la_ 39 KMDATLSTLKACKHLALSTNNIE-KI-S-SLSGMENLRILSLGRNL-IK-KIENLDAVADTLEELWI------SYNQIAS 107 (198)
T ss_dssp CCHHHHHHTTTCCEEECSEEEES-CC-C-CHHHHTTCCEEECCEEE-EC-SCSSHHHHHHHCCEEEC------SEEECCC
T ss_pred hhhhHHhcccccceeECcccCCC-Cc-c-cccCCccccChhhcccc-cc-ccccccccccccccccc------ccccccc
Confidence 34556677777888888877776 44 2 46677778888887776 44 4454444 566777765 6666664
Q ss_pred cccccccCCCCCcEEEccCCeeeecCCCceEEEeecceeeeeecc-ccccccccccEEEecCCeeeeccCCC--------
Q 040144 196 HLTDQLGQFRNLVTFNLVNNSIVGFIPWSFELHIYDNKLNVTLFE-LHFANLIEMSWFRVGGNQLTLEVKHD-------- 266 (289)
Q Consensus 196 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~L~l~~n~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~-------- 266 (289)
. + .+..+++|+.|++++|.++ .++. ..+.++++|+.|++++|++....+..
T Consensus 108 l-~-~~~~l~~L~~L~L~~N~i~------------------~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~ 167 (198)
T d1m9la_ 108 L-S-GIEKLVNLRVLYMSNNKIT------------------NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI 167 (198)
T ss_dssp H-H-HHHHHHHSSEEEESEEECC------------------CHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHH
T ss_pred c-c-cccccccccccccccchhc------------------cccccccccCCCccceeecCCCccccCcccccchhhHHH
Confidence 2 2 3566777888877777666 2321 25677888888888888876544432
Q ss_pred --ccccccccEEe
Q 040144 267 --WIPHFQLVALG 277 (289)
Q Consensus 267 --~~~~~~L~~l~ 277 (289)
+..+++|+.||
T Consensus 168 ~vi~~lp~L~~LD 180 (198)
T d1m9la_ 168 EVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHCSSCCEES
T ss_pred HHHHHCCCcCEeC
Confidence 44667787776
No 35
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.12 E-value=2.4e-10 Score=81.79 Aligned_cols=83 Identities=17% Similarity=0.102 Sum_probs=40.2
Q ss_pred CCEEEccCceeeeeeChhhhcCCCCccEEeCCCCCcccCCCCcccc-ccCcceeeccccccccCCcccccccccccCCCC
Q 040144 128 LPFLDLGFNNFQGTIDLEALGNLTSINRLDLSLNTGLTGRIPRSMA-LCNLKSINLQESLDMRSSSIYGHLTDQLGQFRN 206 (289)
Q Consensus 128 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~l~l~~~~~~~~~~~~l~~~~~ 206 (289)
.+.++..++.+. .. +..+..++++++|+++++..++...+..|. +++|+.|++ ++|.+....+.+|..+++
T Consensus 10 ~~~l~c~~~~~~-~~-p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~L------s~N~l~~i~~~~f~~l~~ 81 (156)
T d2ifga3 10 SSGLRCTRDGAL-DS-LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI------VKSGLRFVAPDAFHFTPR 81 (156)
T ss_dssp SSCEECCSSCCC-TT-TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEEC------CSSCCCEECTTGGGSCSC
T ss_pred CCeEEecCCCCc-cC-cccccCccccCeeecCCCccccccCchhhccccccCccee------eccccCCccccccccccc
Confidence 344455554444 23 444555555666665544212222223344 555555544 555555544555555555
Q ss_pred CcEEEccCCeee
Q 040144 207 LVTFNLVNNSIV 218 (289)
Q Consensus 207 L~~L~l~~n~~~ 218 (289)
|+.|++++|+++
T Consensus 82 L~~L~Ls~N~l~ 93 (156)
T d2ifga3 82 LSRLNLSFNALE 93 (156)
T ss_dssp CCEEECCSSCCS
T ss_pred ccceeccCCCCc
Confidence 555555555554
No 36
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.08 E-value=3.5e-10 Score=80.89 Aligned_cols=64 Identities=23% Similarity=0.123 Sum_probs=29.6
Q ss_pred hhcCCCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCcee
Q 040144 73 ANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNF 138 (289)
Q Consensus 73 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 138 (289)
+..+++|+.|++++|.++.+.+..|..+++|+.|++++|.++ .++.......++++|++++|.+
T Consensus 52 f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~--~l~~~~~~~~~l~~L~L~~Np~ 115 (156)
T d2ifga3 52 LRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE--SLSWKTVQGLSLQELVLSGNPL 115 (156)
T ss_dssp SCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS--CCCSTTTCSCCCCEEECCSSCC
T ss_pred hccccccCcceeeccccCCcccccccccccccceeccCCCCc--ccChhhhccccccccccCCCcc
Confidence 444455555555555554444444445555555555555543 2222222223455555555544
No 37
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.19 E-value=1.2e-07 Score=67.72 Aligned_cols=66 Identities=24% Similarity=0.200 Sum_probs=36.9
Q ss_pred hhcCCCccEEEccCCccCCCCc--ccccCCCCCcEEeccCCCCCCcchhhHhhcCCCCCEEEccCceee
Q 040144 73 ANKLLSLVELRLSNCQLQHFSP--LATVNFSSLTMLDLSHNQFDNSFILSWVFALSHLPFLDLGFNNFQ 139 (289)
Q Consensus 73 ~~~~~~L~~L~l~~~~l~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 139 (289)
...+++|++|++++|.++.+.+ ..+..+++|+.|++++|.+++-... .......++++++.+|.+.
T Consensus 61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l-~~l~~~~L~~L~L~~Npl~ 128 (162)
T d1koha1 61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL-DKIKGLKLEELWLDGNSLS 128 (162)
T ss_dssp HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGH-HHHTTCCCSSCCCTTSTTS
T ss_pred HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhh-hhhhccccceeecCCCCcC
Confidence 3456777777777777766432 2334566666667766666521111 1122345666666666554
No 38
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.17 E-value=3.5e-08 Score=70.67 Aligned_cols=85 Identities=26% Similarity=0.183 Sum_probs=63.7
Q ss_pred CCCCcccEEeccCccccccchhhHhhhcCCCccEEEccCCccCCCCcccccCCCCCcEEeccCCCCCCcc------hhhH
Q 040144 48 SGISLLEHLDLRYVNLSIAFDWLMVANKLLSLVELRLSNCQLQHFSPLATVNFSSLTMLDLSHNQFDNSF------ILSW 121 (289)
Q Consensus 48 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~------~~~~ 121 (289)
..++.|++|++++|.+.....+...+..+++|+.|++++|.+.............++.+++.+|.+.... ....
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i 141 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI 141 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence 4688999999999999887544456788999999999999998865433344567899999999886211 1223
Q ss_pred hhcCCCCCEEE
Q 040144 122 VFALSHLPFLD 132 (289)
Q Consensus 122 ~~~~~~L~~L~ 132 (289)
+..+++|+.||
T Consensus 142 ~~~~P~L~~LD 152 (162)
T d1koha1 142 RERFPKLLRLD 152 (162)
T ss_dssp HTTSTTCCEET
T ss_pred HHHCCCCCEEC
Confidence 55678888876
No 39
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=98.00 E-value=5.9e-06 Score=59.02 Aligned_cols=41 Identities=17% Similarity=0.113 Sum_probs=16.6
Q ss_pred CCcccEEeccCcccccc--chhhHhhhcCCCccEEEccCCccC
Q 040144 50 ISLLEHLDLRYVNLSIA--FDWLMVANKLLSLVELRLSNCQLQ 90 (289)
Q Consensus 50 l~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~l~ 90 (289)
.+.|++|++++|.+... ..+...+...+.|++|++++|.++
T Consensus 43 n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~ 85 (167)
T d1pgva_ 43 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 85 (167)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence 34444444444444332 122223333444444444444443
No 40
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=97.92 E-value=7.2e-06 Score=58.53 Aligned_cols=113 Identities=12% Similarity=0.121 Sum_probs=69.3
Q ss_pred CCCcccEEeccCc-ccccc--chhhHhhhcCCCccEEEccCCccCCCCc----ccccCCCCCcEEeccCCCCCCcchhh-
Q 040144 49 GISLLEHLDLRYV-NLSIA--FDWLMVANKLLSLVELRLSNCQLQHFSP----LATVNFSSLTMLDLSHNQFDNSFILS- 120 (289)
Q Consensus 49 ~l~~L~~L~l~~~-~~~~~--~~~~~~~~~~~~L~~L~l~~~~l~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~- 120 (289)
+.+.|++|+++++ .+... ..+...+...+.|++|++++|.+..... ..+...+.|+.|++++|.+++.....
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l 92 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 92 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence 4567777777764 34332 2344456677888888888887764322 23345677888888888887332222
Q ss_pred --HhhcCCCCCEEEccCceeee-------eeChhhhcCCCCccEEeCCCCC
Q 040144 121 --WVFALSHLPFLDLGFNNFQG-------TIDLEALGNLTSINRLDLSLNT 162 (289)
Q Consensus 121 --~~~~~~~L~~L~l~~n~~~~-------~~~~~~~~~~~~L~~L~l~~n~ 162 (289)
.+...+.|++|++.+|.... .+ ..++...+.|+.++++.+.
T Consensus 93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l-~~~L~~n~sL~~l~l~~~~ 142 (167)
T d1pgva_ 93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDM-MMAIEENESLLRVGISFAS 142 (167)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHH-HHHHHHCSSCCEEECCCCC
T ss_pred HHHHHhCCcCCEEECCCCcCCCccHHHHHHH-HHHHHhCCCccEeeCcCCC
Confidence 33445678888887764321 12 3445556778888776543
No 41
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=97.48 E-value=4.5e-05 Score=54.17 Aligned_cols=42 Identities=7% Similarity=0.020 Sum_probs=17.9
Q ss_pred CCCcccEEeccCcccccc--chhhHhhhcCCCccEEEccCCccC
Q 040144 49 GISLLEHLDLRYVNLSIA--FDWLMVANKLLSLVELRLSNCQLQ 90 (289)
Q Consensus 49 ~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~l~ 90 (289)
..++|++|++++|.+... ..+...+...+.++.+++.+|.++
T Consensus 44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~ 87 (166)
T d1io0a_ 44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 87 (166)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence 344455555555544332 112223334444555554444443
No 42
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=97.45 E-value=5.3e-05 Score=53.77 Aligned_cols=113 Identities=13% Similarity=0.092 Sum_probs=67.9
Q ss_pred CCCcccEEeccCc-ccccc--chhhHhhhcCCCccEEEccCCccCCCCc----ccccCCCCCcEEeccCCCCCCcchh--
Q 040144 49 GISLLEHLDLRYV-NLSIA--FDWLMVANKLLSLVELRLSNCQLQHFSP----LATVNFSSLTMLDLSHNQFDNSFIL-- 119 (289)
Q Consensus 49 ~l~~L~~L~l~~~-~~~~~--~~~~~~~~~~~~L~~L~l~~~~l~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~-- 119 (289)
+.+.|++|+++++ .+... ..+...+...++|++|++++|.++.... ..+...+.++.++++++.+++....
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l 94 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 94 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence 4567777777763 34332 2344456677888888888887765322 2334567788888888877632222
Q ss_pred -hHhhcCCCCCEEEcc--Cceeeee----eChhhhcCCCCccEEeCCCCC
Q 040144 120 -SWVFALSHLPFLDLG--FNNFQGT----IDLEALGNLTSINRLDLSLNT 162 (289)
Q Consensus 120 -~~~~~~~~L~~L~l~--~n~~~~~----~~~~~~~~~~~L~~L~l~~n~ 162 (289)
..+...++++.+++. +|.+... + ...+...+.|+.|++..+.
T Consensus 95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~L-a~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 95 VEALQSNTSLIELRIDNQSQPLGNNVEMEI-ANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHH-HHHHHHCSSCCEEECCCSS
T ss_pred HHHHHhCccccEEeeccCCCcCcHHHHHHH-HHHHHhCCCcCEEeCcCCC
Confidence 234455677766554 4445321 2 3445567778888876654
Done!