BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040145
(402 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 6/155 (3%)
Query: 178 KYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTI 237
+Y+ ++W+++ M TAR V G+IY GG L L+S E DP G+W +
Sbjct: 132 RYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDG-LNILNSVEKYDPHTGHWTNV 190
Query: 238 ASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS 297
M T + A+L+ + V G+ +S + Y+ TD+W ++ +
Sbjct: 191 TPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSV-EAYNIRTDSWTTVTSMTTPRCYVGA 249
Query: 298 VVVYEHLFVVSELERMKL----KVYDPSTDSWETI 328
V+ L+ ++ + L + YDP DSWE +
Sbjct: 250 TVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVV 284
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 89/212 (41%), Gaps = 31/212 (14%)
Query: 159 LFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADL 218
L V GG S P+D+V KY+ + W+ + + R + AS + IYV GG
Sbjct: 17 LLVVGGFGSQ-QSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDG-R 74
Query: 219 FELDSAEVLDPV---KGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRG--- 272
L S E LD G W ++A M A L + V+ G F S R
Sbjct: 75 SRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGG----FDGSRRHTSM 130
Query: 273 QVYDPSTDNWESMAVGLREGWTGSSVVV----------YEHLFVVSELERMKLKVYDPST 322
+ YDP+ D W SM ++ G+ +VV Y+ L +++ +E+ YDP T
Sbjct: 131 ERYDPNIDQW-SMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEK-----YDPHT 184
Query: 323 DSWETIEGPPLPEQICKPFAVNACDCRVYVVG 354
W + P+ + V + +YVVG
Sbjct: 185 GHWTNV--TPMATKRSGA-GVALLNDHIYVVG 213
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 55/127 (43%), Gaps = 4/127 (3%)
Query: 157 GTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSA 216
G ++ GG D L+ V KY+ WT + M T RS ++ IYV GG
Sbjct: 160 GVIYCLGGY--DGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDG 217
Query: 217 DLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYD 276
L S E + +W T+ SM T A VL G+L G+ +S + YD
Sbjct: 218 -TAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSI-ECYD 275
Query: 277 PSTDNWE 283
P D+WE
Sbjct: 276 PIIDSWE 282
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 159 LFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADL 218
++V GG D L V Y ++ + WT + M T R + + V+ G +Y G +
Sbjct: 209 IYVVGGF--DGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNS 266
Query: 219 FELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL 252
L S E DP+ +W + SMGT VL
Sbjct: 267 L-LSSIECYDPIIDSWEVVTSMGTQRCDAGVCVL 299
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 92/250 (36%), Gaps = 24/250 (9%)
Query: 97 RKELGFKDPWLFVFAFHKCTGKIQW-QVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPR 155
R LG + L V F I + D W +P++ K + S+
Sbjct: 8 RARLGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYV------ASVSL 61
Query: 156 EGTLFVCGGM-----VSDVDCPLDLVLKYEMQKNR-WTVMNKMITARSFFASGVIGGMIY 209
++V GG +S V+C L Y ++ W + M R + +G MIY
Sbjct: 62 HDRIYVIGGYDGRSRLSSVEC-----LDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIY 116
Query: 210 VAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVS 269
V+GG S E DP W + M T V G + G+ ++
Sbjct: 117 VSGGFDGSRRHT-SMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILN 175
Query: 270 PRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERM----KLKVYDPSTDSW 325
+ YDP T +W ++ + ++ +H++VV + ++ Y+ TDSW
Sbjct: 176 SV-EKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSW 234
Query: 326 ETIEGPPLPE 335
T+ P
Sbjct: 235 TTVTSMTTPR 244
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 8/147 (5%)
Query: 159 LFVCGGM-VSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSAD 217
L+ GG V+ C L V Y N WT + +M T RS GV+ ++Y GG
Sbjct: 158 LYAVGGYDVASRQC-LSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGP 216
Query: 218 LFELDSAEVLDPVKGNWRTIASMGTNMASYDAAV--LDGKLLVTEGWLWPFFVSPRGQVY 275
L S EV DP WR +A M NM +A V ++G L V G ++ + Y
Sbjct: 217 LVR-KSVEVYDPTTNAWRQVADM--NMCRRNAGVCAVNGLLYVVGGDDGSCNLASV-EYY 272
Query: 276 DPSTDNWESMAVGLREGWTGSSVVVYE 302
+P+TD W ++ + G + + V V +
Sbjct: 273 NPTTDKWTVVSSCMSTGRSYAGVTVID 299
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 100/257 (38%), Gaps = 21/257 (8%)
Query: 81 KRWHLLLGNKERFFTRRKELGFKDPWLFVFAFHKCTGKIQWQVLDL---THYCWHTIPAM 137
+RWH + +RR G VFA G ++ + +D W ++ M
Sbjct: 40 ERWHQV----AELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANM 95
Query: 138 PCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARS 197
+D+ G ++ G L+ GG D L V Y ++ N W + M T RS
Sbjct: 96 --RDRRSTLGAAVLN----GLLYAVGGF--DGSTGLSSVEAYNIKSNEWFHVAPMNTRRS 147
Query: 198 FFASGVIGGMIYVAGGSSADLFE-LDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKL 256
GV+GG++Y GG + L + E + W IA M T + VL+ L
Sbjct: 148 SVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLL 207
Query: 257 LVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVV----SELER 312
G P V +VYDP+T+ W +A V L+VV
Sbjct: 208 YAVGGHDGP-LVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNL 266
Query: 313 MKLKVYDPSTDSWETIE 329
++ Y+P+TD W +
Sbjct: 267 ASVEYYNPTTDKWTVVS 283
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 89/229 (38%), Gaps = 58/229 (25%)
Query: 179 YEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIA 238
Y+ ++ RW + ++ + R + G+++ GG + L + + + DPVK W ++A
Sbjct: 35 YDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSL-RVRTVDSYDPVKDQWTSVA 93
Query: 239 SMGTNMASYDAAVLDGKLLVTEGWLWP----------------FFVSPRG---------- 272
+M ++ AAVL+G L G+ F V+P
Sbjct: 94 NMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV 153
Query: 273 ----------------------QVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVV--- 307
+ Y+ +T+ W +A + +G+ V V +L
Sbjct: 154 VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAE-MSTRRSGAGVGVLNNLLYAVGG 212
Query: 308 --SELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVG 354
L R ++VYDP+T++W + + + AVN +YVVG
Sbjct: 213 HDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGL---LYVVG 258
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 85/195 (43%), Gaps = 11/195 (5%)
Query: 124 LDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK 183
LD W +P +P C G V + ++V G + LD VL Y+
Sbjct: 83 LDNVSSEWVGLPPLPSAR--CLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVA 136
Query: 184 NRWTVMNKMITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMG 241
+W+ + + + VI GMIY GG + D + + +P KG+W+ +A M
Sbjct: 137 AKWSEVKNLPI--KVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMK 194
Query: 242 TNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVY 301
T + + A+ GK+++ G + +S + +D T+ WE M +E + S V +
Sbjct: 195 TPRSMFGVAIHKGKIVIA-GGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLA 253
Query: 302 EHLFVVSELERMKLK 316
L+ + ++L+
Sbjct: 254 GSLYAIGGFAMIQLE 268
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 5/139 (3%)
Query: 153 IPREGTLFVCGGMVSD---VDCPLD-LVLKYEMQKNRWTVMNKMITARSFFASGVIGGMI 208
+ ++ ++V GG+ D D PL + + + W + + +AR F G + I
Sbjct: 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKI 112
Query: 209 YVAGGSSADL-FELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFF 267
YV G LDS DPV W + ++ + ++ +G + G
Sbjct: 113 YVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKK 172
Query: 268 VSPRGQVYDPSTDNWESMA 286
+ R +Y+P +W+ +A
Sbjct: 173 CTNRVFIYNPKKGDWKDLA 191
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 83/212 (39%), Gaps = 13/212 (6%)
Query: 172 PLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVK 231
P+ + Y + K+ W T R A+ G IY +GGS L E D
Sbjct: 68 PIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRT 127
Query: 232 GNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPR----GQVYDPSTDNWESMAV 287
+W T SM T S+ +G + V G L VS R +VYDP+T+ W +
Sbjct: 128 ESWHTKPSMLTQRCSHGMVEANGLIYVCGGSL-GNNVSGRVLNSCEVYDPATETWTELCP 186
Query: 288 GLREGWTGSSVVVYEHLFVVSELERM----KLKVYDPSTDSWETIEGPPLPEQICKPFAV 343
+ V V + +F V + ++ YD + W+ + P K AV
Sbjct: 187 MIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV 246
Query: 344 NACDCRVYVVGRNLHVA-VGHITRLSTSEKKW 374
+ VYV+ V +GHI +T KW
Sbjct: 247 GSI---VYVLAGFQGVGRLGHILEYNTETDKW 275
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 83/196 (42%), Gaps = 11/196 (5%)
Query: 138 PCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARS 197
PC P V + +G ++ GG + V +YE +++ W ++ M+T R
Sbjct: 98 PCASMSVPRNRIGVGVI-DGHIYAVGGSHGCIH--HSSVERYEPERDEWHLVAPMLTRRI 154
Query: 198 FFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLL 257
V+ ++Y GG L+SAE P + WR I M T + VL +
Sbjct: 155 GVGVAVLNRLLYAVGGFDG-TNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIY 213
Query: 258 VTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYE-HLFVVSELERM--- 313
G+ ++ + YD T+ W +A +R + + V++ ++V+ +
Sbjct: 214 AAGGYDGQDQLNSV-ERYDVETETWTFVAP-MRHHRSALGITVHQGKIYVLGGYDGHTFL 271
Query: 314 -KLKVYDPSTDSWETI 328
++ YDP +D+W +
Sbjct: 272 DSVECYDPDSDTWSEV 287
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 10/176 (5%)
Query: 157 GTLFVCGGMVSDVDCPLD--LVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGS 214
G L+ GG + D D + Y N+W+ M R+ GVI G IY GGS
Sbjct: 65 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGS 124
Query: 215 SADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQV 274
+ S E +P + W +A M T AVL+ +LL G +
Sbjct: 125 HGCIHH-SSVERYEPERDEWHLVAPMLTRRIGVGVAVLN-RLLYAVGGFDGTNRLNSAEC 182
Query: 275 YDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVS-----ELERMKLKVYDPSTDSW 325
Y P + W M + +G+ V V + + + + ++ YD T++W
Sbjct: 183 YYPERNEWR-MITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW 237
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Query: 159 LFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADL 218
++ GG D L+ V +Y+++ WT + M RS V G IYV GG
Sbjct: 212 IYAAGGY--DGQDQLNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDGHT 269
Query: 219 FELDSAEVLDPVKGNWRTIASMGTNMASYDAAV 251
F LDS E DP W + M + + AV
Sbjct: 270 F-LDSVECYDPDSDTWSEVTRMTSGRSGVGVAV 301
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 66/183 (36%), Gaps = 12/183 (6%)
Query: 154 PREGTL-FVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAG 212
P+ G L + GG L + Y W + + RS A V+GG++Y G
Sbjct: 15 PKVGRLIYTAGGYFRQ---SLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVG 71
Query: 213 G--SSADLFELDSA-EVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVS 269
G +S D SA + +P+ W ASM V+DG + G S
Sbjct: 72 GRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHS 131
Query: 270 PRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMK----LKVYDPSTDSW 325
+ Y+P D W +A L V+ L+ V + + Y P + W
Sbjct: 132 SV-ERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEW 190
Query: 326 ETI 328
I
Sbjct: 191 RMI 193
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 71/158 (44%), Gaps = 8/158 (5%)
Query: 176 VLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWR 235
V +YE +++ W ++ M+T R V+ ++Y GG L+SAE P + WR
Sbjct: 132 VERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDG-TNRLNSAECYYPERNEWR 190
Query: 236 TIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTG 295
I M T + VL + G+ ++ + YD T+ W +A +R +
Sbjct: 191 MITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSV-ERYDVETETWTFVAP-MRHHRSA 248
Query: 296 SSVVVYE-HLFVVSELERM----KLKVYDPSTDSWETI 328
+ V++ ++V+ + ++ YDP +D+W +
Sbjct: 249 LGITVHQGKIYVLGGYDGHTFLDSVECYDPDSDTWSEV 286
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 10/176 (5%)
Query: 157 GTLFVCGGMVSDVDCPLD--LVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGS 214
G L+ GG + D D + Y N+W+ M R+ GVI G IY GGS
Sbjct: 64 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGS 123
Query: 215 SADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQV 274
+ S E +P + W +A M T AVL+ +LL G +
Sbjct: 124 HGCIHH-SSVERYEPERDEWHLVAPMLTRRIGVGVAVLN-RLLYAVGGFDGTNRLNSAEC 181
Query: 275 YDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVS-----ELERMKLKVYDPSTDSW 325
Y P + W M + +G+ V V + + + + ++ YD T++W
Sbjct: 182 YYPERNEWR-MITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW 236
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Query: 159 LFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADL 218
++ GG D L+ V +Y+++ WT + M RS V G IYV GG
Sbjct: 211 IYAAGGY--DGQDQLNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDGHT 268
Query: 219 FELDSAEVLDPVKGNWRTIASMGTNMASYDAAV 251
F LDS E DP W + M + + AV
Sbjct: 269 F-LDSVECYDPDSDTWSEVTRMTSGRSGVGVAV 300
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 66/183 (36%), Gaps = 12/183 (6%)
Query: 154 PREGTL-FVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAG 212
P+ G L + GG L + Y W + + RS A V+GG++Y G
Sbjct: 14 PKVGRLIYTAGGYFRQ---SLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVG 70
Query: 213 G--SSADLFELDSA-EVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVS 269
G +S D SA + +P+ W ASM V+DG + G S
Sbjct: 71 GRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHS 130
Query: 270 PRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMK----LKVYDPSTDSW 325
+ Y+P D W +A L V+ L+ V + + Y P + W
Sbjct: 131 SV-ERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEW 189
Query: 326 ETI 328
I
Sbjct: 190 RMI 192
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 85/191 (44%), Gaps = 18/191 (9%)
Query: 151 VSIPR--------EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASG 202
+S+PR +G ++ GG + + V +YE +++ W ++ M+T R
Sbjct: 108 MSVPRNRIGVGVIDGHIYAVGGSHGCIH--HNSVERYEPERDEWHLVAPMLTRRIGVGVA 165
Query: 203 VIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGW 262
V+ ++Y GG L+SAE P + WR I +M T + VL + G+
Sbjct: 166 VLNRLLYAVGGFDG-TNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGY 224
Query: 263 LWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYE-HLFVVSELERM----KLKV 317
++ + YD T+ W +A ++ + + V++ ++V+ + ++
Sbjct: 225 DGQDQLNSV-ERYDVETETWTFVAP-MKHRRSALGITVHQGRIYVLGGYDGHTFLDSVEC 282
Query: 318 YDPSTDSWETI 328
YDP TD+W +
Sbjct: 283 YDPDTDTWSEV 293
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 13/205 (6%)
Query: 157 GTLFVCGGMVSDVDCPLD--LVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGS 214
G L+ GG + D D + Y N+W+ M R+ GVI G IY GGS
Sbjct: 71 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGS 130
Query: 215 SADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQV 274
+ +S E +P + W +A M T AVL+ +LL G +
Sbjct: 131 HGCIHH-NSVERYEPERDEWHLVAPMLTRRIGVGVAVLN-RLLYAVGGFDGTNRLNSAEC 188
Query: 275 YDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVS-----ELERMKLKVYDPSTDSWETIE 329
Y P + W M + +G+ V V + + + + ++ YD T++W +
Sbjct: 189 YYPERNEWR-MITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFV- 246
Query: 330 GPPLPEQICKPFAVNACDCRVYVVG 354
P+ + + R+YV+G
Sbjct: 247 -APMKHRR-SALGITVHQGRIYVLG 269
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Query: 159 LFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADL 218
++ GG D L+ V +Y+++ WT + M RS V G IYV GG
Sbjct: 218 IYAAGGY--DGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHT 275
Query: 219 FELDSAEVLDPVKGNWRTIASMGTNMASYDAAV 251
F LDS E DP W + M + + AV
Sbjct: 276 F-LDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 307
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 66/188 (35%), Gaps = 12/188 (6%)
Query: 149 RCVSIPREGTL-FVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGM 207
R P+ G L + GG L + Y W + + RS A V+GG+
Sbjct: 16 RGSHAPKVGRLIYTAGGYFRQ---SLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGL 72
Query: 208 IYVAGG--SSADLFELDSA-EVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLW 264
+Y GG +S D SA + +P+ W A M V+DG + G
Sbjct: 73 LYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHG 132
Query: 265 PFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMK----LKVYDP 320
+ + Y+P D W +A L V+ L+ V + + Y P
Sbjct: 133 CIHHNSV-ERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYP 191
Query: 321 STDSWETI 328
+ W I
Sbjct: 192 ERNEWRMI 199
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 85/191 (44%), Gaps = 18/191 (9%)
Query: 151 VSIPR--------EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASG 202
+S+PR +G ++ GG + + V +YE +++ W ++ M+T R
Sbjct: 109 MSVPRNRIGVGVIDGHIYAVGGSHGCIH--HNSVERYEPERDEWHLVAPMLTRRIGVGVA 166
Query: 203 VIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGW 262
V+ ++Y GG L+SAE P + WR I +M T + VL + G+
Sbjct: 167 VLNRLLYAVGGFDG-TNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGY 225
Query: 263 LWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYE-HLFVVSELERM----KLKV 317
++ + YD T+ W +A ++ + + V++ ++V+ + ++
Sbjct: 226 DGQDQLNSV-ERYDVETETWTFVAP-MKHRRSALGITVHQGRIYVLGGYDGHTFLDSVEC 283
Query: 318 YDPSTDSWETI 328
YDP TD+W +
Sbjct: 284 YDPDTDTWSEV 294
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 13/205 (6%)
Query: 157 GTLFVCGGMVSDVDCPLD--LVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGS 214
G L+ GG + D D + Y N+W+ M R+ GVI G IY GGS
Sbjct: 72 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGS 131
Query: 215 SADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQV 274
+ +S E +P + W +A M T AVL+ +LL G +
Sbjct: 132 HGCIHH-NSVERYEPERDEWHLVAPMLTRRIGVGVAVLN-RLLYAVGGFDGTNRLNSAEC 189
Query: 275 YDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVS-----ELERMKLKVYDPSTDSWETIE 329
Y P + W M + +G+ V V + + + + ++ YD T++W +
Sbjct: 190 YYPERNEWR-MITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFV- 247
Query: 330 GPPLPEQICKPFAVNACDCRVYVVG 354
P+ + + R+YV+G
Sbjct: 248 -APMKHRR-SALGITVHQGRIYVLG 270
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Query: 159 LFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADL 218
++ GG D L+ V +Y+++ WT + M RS V G IYV GG
Sbjct: 219 IYAAGGY--DGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHT 276
Query: 219 FELDSAEVLDPVKGNWRTIASMGTNMASYDAAV 251
F LDS E DP W + M + + AV
Sbjct: 277 F-LDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 308
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 65/183 (35%), Gaps = 12/183 (6%)
Query: 154 PREGTL-FVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAG 212
P+ G L + GG L + Y W + + RS A V+GG++Y G
Sbjct: 22 PKVGRLIYTAGGYFRQ---SLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVG 78
Query: 213 G--SSADLFELDSA-EVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVS 269
G +S D SA + +P+ W A M V+DG + G +
Sbjct: 79 GRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHN 138
Query: 270 PRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMK----LKVYDPSTDSW 325
+ Y+P D W +A L V+ L+ V + + Y P + W
Sbjct: 139 SV-ERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEW 197
Query: 326 ETI 328
I
Sbjct: 198 RMI 200
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 6/128 (4%)
Query: 158 TLFVCGGM-VSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGM--IYVAGGS 214
+++V GG + D + LD V+ Y+ +W + + + V+ M +YV GG
Sbjct: 100 SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL--PYVVYGHTVLSHMDLVYVIGGK 157
Query: 215 SADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQV 274
+D L+ V DP K W+ +A M T + + A V DG+++V G + ++ +V
Sbjct: 158 GSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAG-VTDTGLTSSAEV 216
Query: 275 YDPSTDNW 282
Y + + W
Sbjct: 217 YSITDNKW 224
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 77/195 (39%), Gaps = 9/195 (4%)
Query: 138 PCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARS 197
PC P V + +G ++ GG + + V +YE +++ W ++ +T R
Sbjct: 104 PCAPXSVPRNRIGVGVI-DGHIYAVGGSHGCIH--HNSVERYEPERDEWHLVAPXLTRRI 160
Query: 198 FFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLL 257
V+ ++Y GG L+SAE P + WR I + T + VL +
Sbjct: 161 GVGVAVLNRLLYAVGGFDG-TNRLNSAECYYPERNEWRXITAXNTIRSGAGVCVLHNCIY 219
Query: 258 VTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERM---- 313
G+ ++ + YD T+ W +A V ++V+ +
Sbjct: 220 AAGGYDGQDQLNSV-ERYDVETETWTFVAPXKHRRSALGITVHQGRIYVLGGYDGHTFLD 278
Query: 314 KLKVYDPSTDSWETI 328
++ YDP TD+W +
Sbjct: 279 SVECYDPDTDTWSEV 293
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 159 LFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADL 218
++ GG D L+ V +Y+++ WT + RS V G IYV GG
Sbjct: 218 IYAAGGY--DGQDQLNSVERYDVETETWTFVAPXKHRRSALGITVHQGRIYVLGGYDGHT 275
Query: 219 FELDSAEVLDPVKGNWRTIASMGTNMASYDAAV 251
F LDS E DP W + + + AV
Sbjct: 276 F-LDSVECYDPDTDTWSEVTRXTSGRSGVGVAV 307
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 64/188 (34%), Gaps = 12/188 (6%)
Query: 149 RCVSIPREGTL-FVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGM 207
R P+ G L + GG L + Y W + + RS A V+GG+
Sbjct: 16 RGSHAPKVGRLIYTAGGYFRQ---SLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGL 72
Query: 208 IYVAGG--SSADLFELDSA-EVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLW 264
+Y GG +S D SA + +P W A V+DG + G
Sbjct: 73 LYAVGGRNNSPDGNTDSSALDCYNPXTNQWSPCAPXSVPRNRIGVGVIDGHIYAVGGSHG 132
Query: 265 PFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMK----LKVYDP 320
+ + Y+P D W +A L V+ L+ V + + Y P
Sbjct: 133 CIHHNSV-ERYEPERDEWHLVAPXLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYP 191
Query: 321 STDSWETI 328
+ W I
Sbjct: 192 ERNEWRXI 199
>pdb|4A1K|A Chain A, Ykud L,D-Transpeptidase
Length = 165
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
Query: 15 KLGDSQMTLSPKFRLAVIQSSLLNPSPELEASLRA--EPFIPGLPDDVALNCLLRLPVES 72
K GD+ +++ FR++ ++LL +P L+A L A IPGLPD +
Sbjct: 8 KQGDTLNSIAADFRIST--AALLQANPSLQAGLTAGQSIVIPGLPDPYT--------IPY 57
Query: 73 HAACRAVCKRWHLLLGNK 90
H A K L L N+
Sbjct: 58 HIAVSIGAKTLTLSLNNR 75
>pdb|4A1I|A Chain A, Ykud From B.Subtilis
pdb|4A1I|B Chain B, Ykud From B.Subtilis
pdb|4A1I|C Chain C, Ykud From B.Subtilis
pdb|4A1I|D Chain D, Ykud From B.Subtilis
pdb|4A1I|E Chain E, Ykud From B.Subtilis
pdb|4A1I|F Chain F, Ykud From B.Subtilis
pdb|4A1I|G Chain G, Ykud From B.Subtilis
pdb|4A1I|H Chain H, Ykud From B.Subtilis
pdb|4A1J|A Chain A, Ykud L,D-Transpeptidase From B.Subtilis
pdb|4A1J|B Chain B, Ykud L,D-Transpeptidase From B.Subtilis
Length = 165
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
Query: 15 KLGDSQMTLSPKFRLAVIQSSLLNPSPELEASLRA--EPFIPGLPDDVALNCLLRLPVES 72
K GD+ +++ FR++ ++LL +P L+A L A IPGLPD +
Sbjct: 8 KQGDTLNSIAADFRIST--AALLQANPSLQAGLTAGQSIVIPGLPDPYT--------IPY 57
Query: 73 HAACRAVCKRWHLLLGNK 90
H A K L L N+
Sbjct: 58 HIAVSIGAKTLTLSLNNR 75
>pdb|1Y7M|A Chain A, Crystal Structure Of The B. Subtilis Ykud Protein At 2 A
Resolution
pdb|1Y7M|B Chain B, Crystal Structure Of The B. Subtilis Ykud Protein At 2 A
Resolution
Length = 164
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 15 KLGDSQMTLSPKFRLAVIQSSLLNPSPELEASLRA--EPFIPGLPD 58
K GD+ +++ FR++ ++LL +P L+A L A IPGLPD
Sbjct: 7 KQGDTLNSIAADFRIST--AALLQANPSLQAGLTAGQSIVIPGLPD 50
>pdb|3ZQD|A Chain A, B. Subtilis L,D-Transpeptidase
pdb|4A52|A Chain A, Nmr Structure Of The Imipenem-Acylated
L,D-Transpeptidase From Bacillus Subtilis
Length = 175
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 15 KLGDSQMTLSPKFRLAVIQSSLLNPSPELEASLRAEP--FIPGLPD 58
K GD+ +++ FR++ ++LL +P L+A L A IPGLPD
Sbjct: 10 KQGDTLNSIAADFRIST--AALLQANPSLQAGLTAGQSIVIPGLPD 53
>pdb|4E3E|A Chain A, Crystal Structure Of Putative Maoc Domain Protein
Dehydratase From Chloroflexus Aurantiacus J-10-Fl
pdb|4E3E|B Chain B, Crystal Structure Of Putative Maoc Domain Protein
Dehydratase From Chloroflexus Aurantiacus J-10-Fl
Length = 352
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 274 VYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSE-----LERMK---LKVYDPSTDSW 325
VY T + S +GLR+ G + VVY H V++ LE ++ ++ DP+ +
Sbjct: 99 VYPGDTLSTTSKVIGLRQNKDGKTGVVYVHSVGVNQWDEVVLEYIRWVXVRKRDPNAPAP 158
Query: 326 ETIEGPPLPEQI-----CKPFAVNACDCRVYVVGRN 356
ET+ P LP+ + P+ V+A + + G N
Sbjct: 159 ETVV-PDLPDSVPVTDLTVPYTVSAANYNLAHAGSN 193
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
Length = 639
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 303 HLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNAC--DCRVYVVGRNLHVA 360
+ V + K +YD S+DSW I GP + Q+ + + +A D RV+ +G +
Sbjct: 238 QIVVTGGNDAKKTSLYDSSSDSW--IPGPDM--QVARGYQSSATMSDGRVFTIGGSFSGG 293
Query: 361 V----GHITRLSTSEKKWS 375
V G + S S K W+
Sbjct: 294 VFEKNGEV--YSPSSKTWT 310
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
Oxidase Obtained By Directed Evolution
Length = 661
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 303 HLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNAC--DCRVYVVGRNLHVA 360
+ V + K +YD S+DSW I GP + Q+ + + +A D RV+ +G +
Sbjct: 260 QIVVTGGNDAKKTSLYDSSSDSW--IPGPDM--QVARGYQSSATMSDGRVFTIGGSFSGG 315
Query: 361 V----GHITRLSTSEKKWS 375
V G + S S K W+
Sbjct: 316 VFEKNGEV--YSPSSKTWT 332
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
Length = 656
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 303 HLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNAC--DCRVYVVG 354
+ V + K +YD S+DSW I GP + Q+ + + +A D RV+ +G
Sbjct: 255 QIVVTGGNDAKKTSLYDSSSDSW--IPGPDM--QVARGYQSSATMSDGRVFTIG 304
>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed
Evolution
Length = 639
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 303 HLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNAC--DCRVYVVG 354
+ V + K +YD S+DSW I GP + Q+ + + +A D RV+ +G
Sbjct: 238 QIVVTGGNDAKKTSLYDSSSDSW--IPGPDM--QVARGYQSSATMSDGRVFTIG 287
>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With
Azide
pdb|1GOF|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOG|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOH|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|2JKX|A Chain A, Galactose Oxidase. Matgo. Copper Free, Expressed In Pichia
Pastoris.
pdb|2VZ1|A Chain A, Premat-Galactose Oxidase
pdb|2VZ3|A Chain A, Bleached Galactose Oxidase
Length = 639
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 303 HLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNAC--DCRVYVVG 354
+ V + K +YD S+DSW I GP + Q+ + + +A D RV+ +G
Sbjct: 238 QIVVTGGNDAKKTSLYDSSSDSW--IPGPDM--QVARGYQSSATMSDGRVFTIG 287
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 303 HLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNAC--DCRVYVVG 354
+ V + K +YD S+DSW I GP + Q+ + + +A D RV+ +G
Sbjct: 238 QIVVTGGNDAKKTSLYDSSSDSW--IPGPDM--QVARGYQSSATMSDGRVFTIG 287
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 303 HLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNAC--DCRVYVVG 354
+ V + K +YD S+DSW I GP + Q+ + + +A D RV+ +G
Sbjct: 238 QIVVTGGNDAKKTSLYDSSSDSW--IPGPDM--QVARGYQSSATMSDGRVFTIG 287
>pdb|3MXU|A Chain A, Crystal Structure Of Glycine Cleavage System Protein H
From Henselae
Length = 143
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Query: 162 CGGMVSDVDCPLDLVLKYEMQKNRW-TVMNKMITAR-SFFASGVIGGMIYVA-GGSSADL 218
G + + P + Y Q + W +V +++T + +A +G ++++ + L
Sbjct: 9 MGTLEAQTQGPGSMSKTYFTQDHEWLSVEGQVVTVGITDYAQEQLGDLVFIDLPQNGTKL 68
Query: 219 FELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLV-----TEGWLWPFFVSPRGQ 273
+ D+A V++ VK A + + +AA+ + LV TEGWLW V Q
Sbjct: 69 SKGDAAAVVESVKAASDVYAPLDGEVVEINAALAESPELVNQKAETEGWLWKMTVQDETQ 128
Query: 274 V 274
+
Sbjct: 129 L 129
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose.
pdb|4I3G|B Chain B, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose
Length = 829
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 292 GWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEG 330
G+T S+ E V ++R +L+ +D +TD+W+T G
Sbjct: 769 GYTKVSLAAGEAKTVTVNVDRRQLQFWDAATDNWKTGTG 807
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,567,852
Number of Sequences: 62578
Number of extensions: 524324
Number of successful extensions: 1005
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 906
Number of HSP's gapped (non-prelim): 60
length of query: 402
length of database: 14,973,337
effective HSP length: 101
effective length of query: 301
effective length of database: 8,652,959
effective search space: 2604540659
effective search space used: 2604540659
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)