Query 040145
Match_columns 402
No_of_seqs 255 out of 2798
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 05:34:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040145.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040145hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 1.1E-44 2.4E-49 350.1 32.8 320 52-389 227-559 (571)
2 PHA02713 hypothetical protein; 100.0 2.4E-41 5.2E-46 328.6 30.4 263 105-387 258-544 (557)
3 KOG4441 Proteins containing BT 100.0 9E-39 1.9E-43 309.1 23.9 261 70-345 300-567 (571)
4 PLN02153 epithiospecifier prot 100.0 4.2E-37 9.1E-42 284.2 27.9 284 82-369 8-338 (341)
5 PHA03098 kelch-like protein; P 100.0 6.5E-37 1.4E-41 300.2 29.6 256 119-393 264-528 (534)
6 PLN02153 epithiospecifier prot 100.0 9.2E-36 2E-40 275.3 31.9 249 126-384 4-292 (341)
7 PHA02713 hypothetical protein; 100.0 4.8E-37 1E-41 298.5 21.4 245 74-329 275-541 (557)
8 TIGR03548 mutarot_permut cycli 100.0 1.9E-35 4.1E-40 271.3 28.7 248 101-361 10-317 (323)
9 PLN02193 nitrile-specifier pro 100.0 8.6E-35 1.9E-39 278.3 34.2 271 103-384 119-418 (470)
10 PLN02193 nitrile-specifier pro 100.0 3.8E-35 8.2E-40 280.8 29.7 281 81-369 151-467 (470)
11 TIGR03547 muta_rot_YjhT mutatr 100.0 1.2E-34 2.5E-39 269.0 30.3 255 101-367 14-343 (346)
12 PHA02790 Kelch-like protein; P 100.0 2.9E-34 6.2E-39 275.4 28.4 202 156-374 271-474 (480)
13 PRK14131 N-acetylneuraminic ac 100.0 4.9E-34 1.1E-38 266.5 28.7 260 101-372 35-370 (376)
14 TIGR03548 mutarot_permut cycli 100.0 6.9E-33 1.5E-37 254.3 27.3 245 147-401 6-308 (323)
15 PHA03098 kelch-like protein; P 100.0 5.8E-33 1.3E-37 272.2 26.1 244 78-335 271-523 (534)
16 PHA02790 Kelch-like protein; P 100.0 1.2E-32 2.5E-37 264.4 26.5 203 103-329 270-478 (480)
17 TIGR03547 muta_rot_YjhT mutatr 100.0 2.9E-32 6.3E-37 252.9 27.2 249 134-401 1-326 (346)
18 KOG4693 Uncharacterized conser 100.0 6.8E-32 1.5E-36 223.1 20.5 253 102-358 21-313 (392)
19 KOG4693 Uncharacterized conser 100.0 1.1E-31 2.3E-36 222.0 19.3 228 146-375 15-281 (392)
20 PRK14131 N-acetylneuraminic ac 100.0 1.4E-30 3E-35 243.3 26.5 254 130-401 18-348 (376)
21 KOG0379 Kelch repeat-containin 99.9 1.3E-25 2.8E-30 214.5 25.4 236 144-387 60-312 (482)
22 KOG0379 Kelch repeat-containin 99.9 3.6E-24 7.8E-29 204.6 25.1 272 92-367 56-354 (482)
23 KOG1230 Protein containing rep 99.9 2.7E-24 5.8E-29 188.5 18.1 239 139-377 61-347 (521)
24 KOG4152 Host cell transcriptio 99.9 7.6E-24 1.6E-28 190.1 15.5 277 82-369 18-362 (830)
25 KOG1230 Protein containing rep 99.9 1.7E-22 3.8E-27 177.2 17.4 222 104-328 78-347 (521)
26 KOG4152 Host cell transcriptio 99.9 2.2E-22 4.7E-27 180.8 18.1 224 129-357 17-274 (830)
27 COG3055 Uncharacterized protei 99.8 3.7E-17 7.9E-22 142.1 21.4 246 103-361 45-363 (381)
28 COG3055 Uncharacterized protei 99.5 3.3E-13 7.1E-18 117.7 14.5 188 187-385 28-264 (381)
29 PF13964 Kelch_6: Kelch motif 99.3 1.9E-11 4.1E-16 78.6 6.8 50 195-244 1-50 (50)
30 TIGR01640 F_box_assoc_1 F-box 99.2 1.1E-08 2.4E-13 89.3 21.0 194 174-371 14-229 (230)
31 PF13964 Kelch_6: Kelch motif 99.1 2.3E-10 4.9E-15 73.6 6.4 48 146-196 3-50 (50)
32 KOG2437 Muskelin [Signal trans 99.0 2.2E-10 4.8E-15 104.0 5.2 182 128-311 238-457 (723)
33 PF01344 Kelch_1: Kelch motif; 99.0 2.8E-10 6.1E-15 72.2 3.6 47 195-241 1-47 (47)
34 KOG2437 Muskelin [Signal trans 98.9 1.3E-09 2.9E-14 99.1 6.4 178 181-359 236-459 (723)
35 PF13415 Kelch_3: Galactose ox 98.9 2.9E-09 6.2E-14 68.0 5.8 49 156-204 1-49 (49)
36 PF07646 Kelch_2: Kelch motif; 98.9 1E-08 2.2E-13 65.4 6.4 47 195-241 1-49 (49)
37 PF01344 Kelch_1: Kelch motif; 98.8 6.7E-09 1.5E-13 65.8 4.6 45 243-287 1-45 (47)
38 PF13415 Kelch_3: Galactose ox 98.8 1.4E-08 3E-13 64.8 5.8 47 205-251 1-48 (49)
39 PF13418 Kelch_4: Galactose ox 98.8 6.5E-09 1.4E-13 66.4 3.5 47 195-241 1-48 (49)
40 smart00612 Kelch Kelch domain. 98.7 1.9E-08 4.1E-13 63.7 5.1 47 207-254 1-47 (47)
41 TIGR01640 F_box_assoc_1 F-box 98.7 1.2E-05 2.6E-10 70.1 21.6 199 119-323 14-230 (230)
42 smart00612 Kelch Kelch domain. 98.6 6.4E-08 1.4E-12 61.2 4.9 47 158-206 1-47 (47)
43 PF07646 Kelch_2: Kelch motif; 98.6 9.8E-08 2.1E-12 60.8 5.7 45 243-287 1-47 (49)
44 PF07250 Glyoxal_oxid_N: Glyox 98.6 1.4E-06 2.9E-11 75.1 14.1 145 175-330 47-207 (243)
45 PF13418 Kelch_4: Galactose ox 98.6 8.3E-08 1.8E-12 61.2 4.5 45 243-287 1-46 (49)
46 PLN02772 guanylate kinase 98.5 1.4E-06 3E-11 79.7 10.8 83 194-279 23-109 (398)
47 PF07250 Glyoxal_oxid_N: Glyox 98.4 1.9E-05 4.2E-10 68.0 15.7 133 222-357 46-190 (243)
48 PF12937 F-box-like: F-box-lik 98.4 4.5E-07 9.8E-12 57.1 3.9 42 53-95 1-42 (47)
49 PLN03215 ascorbic acid mannose 98.4 0.00021 4.5E-09 65.4 21.9 39 51-89 2-41 (373)
50 KOG0281 Beta-TrCP (transducin 98.3 3.5E-05 7.5E-10 67.7 15.0 270 52-359 74-381 (499)
51 PRK11138 outer membrane biogen 98.3 0.0011 2.5E-08 62.8 27.0 223 103-382 119-361 (394)
52 PRK11138 outer membrane biogen 98.2 0.0016 3.5E-08 61.7 26.3 230 102-382 67-320 (394)
53 PF13854 Kelch_5: Kelch motif 98.2 4.9E-06 1.1E-10 50.8 5.2 41 192-232 1-42 (42)
54 PLN02772 guanylate kinase 98.2 1.5E-05 3.2E-10 73.1 10.2 81 243-323 24-110 (398)
55 PF13854 Kelch_5: Kelch motif 98.1 1E-05 2.2E-10 49.4 5.3 40 240-279 1-41 (42)
56 TIGR03300 assembly_YfgL outer 98.1 0.011 2.3E-07 55.8 27.7 215 103-370 104-338 (377)
57 TIGR03300 assembly_YfgL outer 98.0 0.011 2.4E-07 55.6 27.6 222 103-382 64-305 (377)
58 PF07893 DUF1668: Protein of u 98.0 0.0062 1.4E-07 56.2 24.4 124 149-287 70-216 (342)
59 PF00646 F-box: F-box domain; 97.9 3.7E-06 8E-11 53.3 1.5 41 53-94 3-43 (48)
60 smart00256 FBOX A Receptor for 97.9 7.8E-06 1.7E-10 49.7 2.8 38 56-94 1-38 (41)
61 PF13360 PQQ_2: PQQ-like domai 97.9 0.015 3.2E-07 50.7 27.7 212 120-381 4-237 (238)
62 PF13360 PQQ_2: PQQ-like domai 97.7 0.016 3.4E-07 50.5 21.8 161 175-358 4-184 (238)
63 PF08450 SGL: SMP-30/Gluconola 97.6 0.02 4.4E-07 50.3 20.3 199 156-386 11-223 (246)
64 PF07893 DUF1668: Protein of u 97.6 0.0065 1.4E-07 56.1 17.0 123 204-334 75-220 (342)
65 PF03089 RAG2: Recombination a 97.5 0.015 3.2E-07 50.4 17.4 105 158-263 39-174 (337)
66 PF08450 SGL: SMP-30/Gluconola 97.5 0.02 4.3E-07 50.4 18.8 214 104-354 11-244 (246)
67 PF03089 RAG2: Recombination a 97.4 0.025 5.4E-07 49.0 16.5 105 207-311 40-174 (337)
68 PF05096 Glu_cyclase_2: Glutam 97.3 0.033 7.3E-07 48.5 17.4 158 146-324 44-206 (264)
69 PF12768 Rax2: Cortical protei 97.2 0.021 4.5E-07 50.8 14.6 119 209-330 2-130 (281)
70 COG4257 Vgb Streptogramin lyas 97.0 0.19 4E-06 43.7 20.2 232 121-393 85-322 (353)
71 TIGR03866 PQQ_ABC_repeats PQQ- 97.0 0.24 5.2E-06 44.4 26.8 175 120-324 12-190 (300)
72 TIGR03866 PQQ_ABC_repeats PQQ- 96.9 0.27 5.8E-06 44.1 19.9 141 158-324 2-148 (300)
73 PF12768 Rax2: Cortical protei 96.8 0.032 6.9E-07 49.7 12.3 110 172-287 14-130 (281)
74 KOG0274 Cdc4 and related F-box 96.7 0.39 8.5E-06 47.2 20.7 285 47-368 102-400 (537)
75 TIGR02800 propeller_TolB tol-p 96.7 0.63 1.4E-05 44.4 25.9 146 174-329 214-362 (417)
76 KOG2055 WD40 repeat protein [G 96.6 0.12 2.7E-06 47.7 15.1 187 104-322 225-418 (514)
77 PF03178 CPSF_A: CPSF A subuni 96.5 0.17 3.7E-06 46.4 15.8 150 206-369 42-203 (321)
78 KOG2055 WD40 repeat protein [G 96.5 0.32 6.9E-06 45.1 16.7 191 149-370 217-419 (514)
79 PLN02919 haloacid dehalogenase 96.4 1.7 3.8E-05 46.7 28.8 240 104-371 579-889 (1057)
80 PF08268 FBA_3: F-box associat 96.3 0.064 1.4E-06 41.9 10.1 78 250-329 2-88 (129)
81 PRK11028 6-phosphogluconolacto 96.1 1.1 2.3E-05 41.3 24.9 194 106-328 3-214 (330)
82 PRK04792 tolB translocation pr 96.1 1.4 3.1E-05 42.5 26.1 147 173-329 241-390 (448)
83 PF10282 Lactonase: Lactonase, 96.0 1.3 2.9E-05 41.1 20.4 242 103-372 47-326 (345)
84 KOG2120 SCF ubiquitin ligase, 95.9 0.0064 1.4E-07 53.3 3.0 40 51-90 96-135 (419)
85 COG4257 Vgb Streptogramin lyas 95.8 1.2 2.5E-05 39.0 17.0 185 120-329 125-313 (353)
86 PF10282 Lactonase: Lactonase, 95.8 0.77 1.7E-05 42.6 16.7 184 175-369 16-223 (345)
87 cd00216 PQQ_DH Dehydrogenases 95.7 2.2 4.9E-05 41.7 22.5 113 156-284 61-191 (488)
88 PF14870 PSII_BNR: Photosynthe 95.7 1.6 3.5E-05 39.4 18.2 218 128-385 46-270 (302)
89 PRK00178 tolB translocation pr 95.5 2.4 5.2E-05 40.7 22.3 183 118-323 222-408 (430)
90 PF02897 Peptidase_S9_N: Proly 95.4 2.6 5.6E-05 40.2 21.9 249 104-372 134-406 (414)
91 KOG0310 Conserved WD40 repeat- 95.3 2.1 4.5E-05 40.2 16.9 174 118-323 47-227 (487)
92 PRK04792 tolB translocation pr 95.3 3 6.5E-05 40.3 22.9 183 118-322 241-426 (448)
93 PRK05137 tolB translocation pr 95.2 3.2 6.9E-05 39.9 27.5 146 174-329 226-374 (435)
94 KOG0310 Conserved WD40 repeat- 95.1 0.76 1.6E-05 43.0 13.5 137 175-326 49-190 (487)
95 PRK03629 tolB translocation pr 95.1 3.3 7.1E-05 39.8 25.2 170 173-357 222-394 (429)
96 PRK04922 tolB translocation pr 95.0 3.6 7.7E-05 39.6 24.6 181 173-369 227-410 (433)
97 PRK00178 tolB translocation pr 94.8 3.9 8.5E-05 39.2 25.7 181 173-369 222-405 (430)
98 PF03178 CPSF_A: CPSF A subuni 94.8 1.5 3.3E-05 40.2 15.1 152 157-321 42-204 (321)
99 cd00200 WD40 WD40 domain, foun 94.8 2.5 5.4E-05 36.7 23.2 145 155-324 61-210 (289)
100 KOG0316 Conserved WD40 repeat- 94.7 2.4 5.2E-05 36.1 14.2 145 156-324 70-216 (307)
101 PLN02919 haloacid dehalogenase 94.6 7.9 0.00017 41.8 23.2 156 149-324 687-891 (1057)
102 PRK11028 6-phosphogluconolacto 94.6 3.6 7.9E-05 37.8 27.0 258 104-400 46-328 (330)
103 PRK13684 Ycf48-like protein; P 94.6 3.8 8.2E-05 37.9 21.7 169 175-369 153-330 (334)
104 PF08268 FBA_3: F-box associat 94.6 0.52 1.1E-05 36.7 9.8 71 298-368 2-77 (129)
105 cd00200 WD40 WD40 domain, foun 94.5 2.9 6.3E-05 36.3 23.6 174 156-358 104-283 (289)
106 PF05096 Glu_cyclase_2: Glutam 94.5 1.3 2.9E-05 38.8 12.9 109 200-323 49-159 (264)
107 PRK05137 tolB translocation pr 94.4 5.1 0.00011 38.5 23.4 188 119-329 226-420 (435)
108 PRK04043 tolB translocation pr 94.4 5 0.00011 38.4 19.3 176 174-369 213-399 (419)
109 COG2706 3-carboxymuconate cycl 94.3 4 8.7E-05 37.0 25.2 248 104-372 51-325 (346)
110 PF02191 OLF: Olfactomedin-lik 94.3 3.5 7.5E-05 36.2 16.9 182 156-355 30-238 (250)
111 PF12217 End_beta_propel: Cata 94.3 3.1 6.8E-05 36.0 14.1 162 147-310 77-258 (367)
112 PRK04922 tolB translocation pr 94.2 5.6 0.00012 38.2 23.4 182 118-323 227-413 (433)
113 KOG0289 mRNA splicing factor [ 94.1 2.8 6E-05 39.0 14.2 116 198-330 350-471 (506)
114 PLN00181 protein SPA1-RELATED; 94.0 9.1 0.0002 40.1 23.3 174 157-359 545-731 (793)
115 PTZ00421 coronin; Provisional 93.9 6.9 0.00015 38.3 22.1 152 157-327 138-296 (493)
116 PRK04043 tolB translocation pr 93.8 6.5 0.00014 37.6 23.7 186 118-324 212-403 (419)
117 PTZ00421 coronin; Provisional 93.7 7.5 0.00016 38.0 19.4 146 156-323 87-247 (493)
118 PF06433 Me-amine-dh_H: Methyl 93.3 6.4 0.00014 36.0 18.1 243 105-372 3-279 (342)
119 cd00094 HX Hemopexin-like repe 93.3 4.4 9.5E-05 34.1 17.9 146 148-324 9-178 (194)
120 cd00216 PQQ_DH Dehydrogenases 93.1 9.6 0.00021 37.3 26.9 208 103-327 60-327 (488)
121 KOG2997 F-box protein FBX9 [Ge 93.1 0.062 1.3E-06 47.5 2.2 44 53-97 107-155 (366)
122 PF02191 OLF: Olfactomedin-lik 92.8 6.3 0.00014 34.6 17.8 157 147-321 71-247 (250)
123 TIGR03075 PQQ_enz_alc_DH PQQ-d 92.5 4.4 9.5E-05 40.0 14.5 113 156-284 69-197 (527)
124 PRK13684 Ycf48-like protein; P 92.4 8.9 0.00019 35.4 23.6 193 128-356 34-234 (334)
125 COG3823 Glutamine cyclotransfe 92.3 6.2 0.00013 33.2 15.3 181 155-356 54-249 (262)
126 PTZ00420 coronin; Provisional 92.2 13 0.00029 36.9 19.4 143 157-322 87-249 (568)
127 smart00284 OLF Olfactomedin-li 92.0 8.1 0.00017 33.9 18.6 184 156-355 34-243 (255)
128 PF14870 PSII_BNR: Photosynthe 91.7 9.9 0.00022 34.4 23.3 194 128-355 5-205 (302)
129 TIGR03074 PQQ_membr_DH membran 91.4 16 0.00035 37.8 17.4 31 155-193 193-225 (764)
130 PLN00033 photosystem II stabil 91.3 13 0.00029 35.1 23.2 192 156-385 146-365 (398)
131 smart00284 OLF Olfactomedin-li 91.2 9.8 0.00021 33.4 18.7 158 146-321 75-252 (255)
132 COG1520 FOG: WD40-like repeat 91.0 14 0.0003 34.7 19.9 149 155-327 67-225 (370)
133 PF07734 FBA_1: F-box associat 90.9 7.5 0.00016 31.6 12.3 82 250-332 2-94 (164)
134 PF06433 Me-amine-dh_H: Methyl 90.8 1.1 2.3E-05 40.8 7.4 243 103-372 46-322 (342)
135 PRK01742 tolB translocation pr 90.6 16 0.00036 35.0 22.3 161 174-356 228-391 (429)
136 TIGR02800 propeller_TolB tol-p 89.9 18 0.00039 34.3 23.9 181 119-322 214-398 (417)
137 PRK03629 tolB translocation pr 89.9 19 0.00042 34.5 23.3 183 119-323 223-408 (429)
138 COG4946 Uncharacterized protei 89.6 19 0.00042 34.2 16.7 139 175-329 288-439 (668)
139 KOG0291 WD40-repeat-containing 89.5 25 0.00053 35.5 15.7 37 146-188 436-472 (893)
140 KOG0266 WD40 repeat-containing 89.5 21 0.00047 34.5 19.6 193 149-370 207-409 (456)
141 KOG1036 Mitotic spindle checkp 89.2 16 0.00034 32.6 15.1 131 175-324 36-166 (323)
142 KOG0281 Beta-TrCP (transducin 89.1 12 0.00025 34.0 12.2 182 151-369 241-429 (499)
143 cd00094 HX Hemopexin-like repe 89.0 13 0.00027 31.3 17.7 143 201-372 12-177 (194)
144 TIGR03075 PQQ_enz_alc_DH PQQ-d 89.0 25 0.00055 34.8 21.3 114 200-327 64-197 (527)
145 TIGR02658 TTQ_MADH_Hv methylam 89.0 19 0.00042 33.4 23.0 122 103-236 11-142 (352)
146 PF14583 Pectate_lyase22: Olig 88.2 22 0.00049 33.2 14.5 229 105-357 47-303 (386)
147 KOG1332 Vesicle coat complex C 88.1 16 0.00036 31.5 13.8 102 207-329 176-295 (299)
148 KOG0649 WD40 repeat protein [G 87.7 17 0.00038 31.3 12.4 148 233-401 100-261 (325)
149 KOG0305 Anaphase promoting com 87.5 28 0.00061 33.7 14.6 172 175-367 198-375 (484)
150 PLN00181 protein SPA1-RELATED; 87.4 41 0.00089 35.3 24.0 143 156-323 587-740 (793)
151 COG3386 Gluconolactonase [Carb 87.3 23 0.00049 32.3 23.3 220 104-357 36-277 (307)
152 KOG1036 Mitotic spindle checkp 86.9 22 0.00048 31.7 13.6 91 120-233 76-166 (323)
153 KOG0291 WD40-repeat-containing 86.8 38 0.00082 34.3 22.5 178 157-359 319-501 (893)
154 PRK02889 tolB translocation pr 86.6 31 0.00067 33.1 27.4 179 173-369 219-402 (427)
155 PF02239 Cytochrom_D1: Cytochr 86.5 29 0.00062 32.6 14.9 134 173-323 15-160 (369)
156 KOG0266 WD40 repeat-containing 86.2 34 0.00074 33.2 22.7 150 150-323 251-411 (456)
157 COG4946 Uncharacterized protei 86.2 32 0.00069 32.8 18.2 151 156-329 235-398 (668)
158 KOG0649 WD40 repeat protein [G 86.1 22 0.00047 30.8 15.3 165 130-320 100-273 (325)
159 KOG1897 Damage-specific DNA bi 85.9 49 0.0011 34.7 17.1 173 173-356 749-932 (1096)
160 KOG0286 G-protein beta subunit 85.1 27 0.00058 31.1 20.5 180 151-358 103-295 (343)
161 PF07734 FBA_1: F-box associat 85.1 14 0.00029 30.1 10.1 81 298-384 2-91 (164)
162 KOG0286 G-protein beta subunit 84.3 30 0.00064 30.8 18.5 178 120-320 120-302 (343)
163 PF09910 DUF2139: Uncharacteri 83.6 33 0.00071 30.7 12.8 108 270-391 78-198 (339)
164 PF09910 DUF2139: Uncharacteri 83.6 33 0.00071 30.7 18.3 141 171-323 75-232 (339)
165 PRK02889 tolB translocation pr 83.1 45 0.00098 32.0 21.3 147 173-329 175-324 (427)
166 COG1520 FOG: WD40-like repeat 82.8 42 0.00091 31.4 24.6 233 103-369 67-319 (370)
167 KOG0296 Angio-associated migra 81.8 42 0.00091 30.8 19.5 184 104-320 75-273 (399)
168 KOG2111 Uncharacterized conser 81.8 39 0.00085 30.4 15.4 148 156-324 58-215 (346)
169 KOG2321 WD40 repeat protein [G 81.8 14 0.0003 35.9 9.6 95 174-281 155-261 (703)
170 KOG0278 Serine/threonine kinas 81.1 31 0.00068 29.9 10.6 97 151-264 190-289 (334)
171 PLN03215 ascorbic acid mannose 80.9 49 0.0011 31.0 14.9 95 183-287 189-303 (373)
172 PLN00033 photosystem II stabil 80.9 52 0.0011 31.2 24.5 197 128-356 74-300 (398)
173 KOG0315 G-protein beta subunit 80.7 37 0.00081 29.5 15.6 129 205-354 51-185 (311)
174 KOG4378 Nuclear protein COP1 [ 79.5 61 0.0013 31.2 13.4 90 222-322 187-281 (673)
175 KOG0316 Conserved WD40 repeat- 79.5 40 0.00087 29.1 17.1 178 120-324 82-260 (307)
176 PRK01742 tolB translocation pr 79.2 61 0.0013 31.1 21.6 162 118-310 227-391 (429)
177 PF07433 DUF1513: Protein of u 78.8 50 0.0011 29.9 23.4 235 104-356 16-276 (305)
178 PRK10115 protease 2; Provision 78.7 84 0.0018 32.4 25.9 188 173-372 198-396 (686)
179 KOG0639 Transducin-like enhanc 78.1 68 0.0015 30.9 15.2 101 148-263 468-572 (705)
180 TIGR03074 PQQ_membr_DH membran 77.9 64 0.0014 33.6 13.8 32 248-286 189-222 (764)
181 PF12217 End_beta_propel: Cata 77.2 50 0.0011 28.9 14.6 195 155-355 24-257 (367)
182 KOG3545 Olfactomedin and relat 75.2 55 0.0012 28.5 14.3 160 222-402 10-184 (249)
183 KOG0296 Angio-associated migra 74.8 70 0.0015 29.4 16.4 143 156-324 75-223 (399)
184 KOG0772 Uncharacterized conser 72.5 93 0.002 30.2 12.1 214 156-399 178-422 (641)
185 KOG0315 G-protein beta subunit 72.5 65 0.0014 28.1 20.6 210 120-358 62-280 (311)
186 COG3386 Gluconolactonase [Carb 72.3 78 0.0017 28.8 20.5 187 174-387 47-254 (307)
187 KOG2321 WD40 repeat protein [G 70.1 45 0.00097 32.7 9.6 115 194-323 132-260 (703)
188 KOG0278 Serine/threonine kinas 70.1 49 0.0011 28.8 9.0 62 146-216 225-289 (334)
189 PF14781 BBS2_N: Ciliary BBSom 69.4 33 0.00072 26.8 7.2 66 254-328 64-134 (136)
190 PF07433 DUF1513: Protein of u 69.1 90 0.0019 28.3 20.4 129 146-283 6-151 (305)
191 TIGR02658 TTQ_MADH_Hv methylam 68.1 1E+02 0.0023 28.6 24.5 83 100-188 53-142 (352)
192 KOG0272 U4/U6 small nuclear ri 67.8 1.1E+02 0.0024 28.8 13.0 102 253-367 272-374 (459)
193 KOG3545 Olfactomedin and relat 67.8 83 0.0018 27.4 17.5 182 156-355 30-237 (249)
194 KOG0289 mRNA splicing factor [ 67.2 1.2E+02 0.0025 28.8 18.1 116 246-385 350-471 (506)
195 PF02897 Peptidase_S9_N: Proly 63.8 1.4E+02 0.0029 28.4 21.0 208 151-370 129-357 (414)
196 KOG1332 Vesicle coat complex C 63.7 1E+02 0.0022 26.9 20.1 18 174-191 80-97 (299)
197 PTZ00420 coronin; Provisional 63.0 1.7E+02 0.0037 29.3 21.9 150 158-329 139-301 (568)
198 COG0823 TolB Periplasmic compo 62.9 1.5E+02 0.0032 28.5 15.3 104 221-330 261-368 (425)
199 COG4880 Secreted protein conta 61.9 1.5E+02 0.0032 28.2 11.7 56 220-280 404-459 (603)
200 KOG4649 PQQ (pyrrolo-quinoline 59.1 1.3E+02 0.0028 26.6 13.5 91 221-324 32-126 (354)
201 KOG0299 U3 snoRNP-associated p 58.7 98 0.0021 29.4 9.4 135 203-358 211-348 (479)
202 KOG0294 WD40 repeat-containing 58.2 1.5E+02 0.0032 27.0 15.2 28 151-185 47-74 (362)
203 KOG1523 Actin-related protein 57.9 1.5E+02 0.0032 27.0 12.1 99 221-326 31-137 (361)
204 PF13088 BNR_2: BNR repeat-lik 57.9 1.3E+02 0.0029 26.4 17.7 194 155-352 57-275 (275)
205 KOG1898 Splicing factor 3b, su 57.7 2.7E+02 0.0058 29.9 15.2 165 172-347 851-1029(1205)
206 KOG2048 WD40 repeat protein [G 55.2 84 0.0018 31.4 8.7 97 301-400 36-134 (691)
207 PF13570 PQQ_3: PQQ-like domai 54.0 29 0.00062 20.2 3.7 23 298-322 18-40 (40)
208 KOG4341 F-box protein containi 53.7 14 0.0003 34.7 3.1 40 51-90 70-109 (483)
209 KOG0263 Transcription initiati 53.0 1.6E+02 0.0035 29.9 10.4 61 253-321 588-649 (707)
210 KOG0308 Conserved WD40 repeat- 51.1 2.4E+02 0.0052 28.3 11.0 67 154-233 127-204 (735)
211 KOG0285 Pleiotropic regulator 50.4 2.1E+02 0.0046 26.5 17.1 158 175-359 216-382 (460)
212 KOG3669 Uncharacterized conser 50.2 2.7E+02 0.0058 27.6 13.1 56 222-287 208-270 (705)
213 KOG0285 Pleiotropic regulator 50.1 2.1E+02 0.0046 26.5 17.9 60 299-359 368-432 (460)
214 KOG0318 WD40 repeat stress pro 49.5 2.6E+02 0.0057 27.3 15.9 110 150-279 448-561 (603)
215 KOG0268 Sof1-like rRNA process 49.3 2.2E+02 0.0047 26.5 9.7 60 302-366 284-343 (433)
216 PF08662 eIF2A: Eukaryotic tra 48.6 1.6E+02 0.0035 24.6 10.0 65 156-232 71-135 (194)
217 KOG0647 mRNA export protein (c 48.2 2.1E+02 0.0046 25.8 12.4 43 270-312 176-220 (347)
218 COG0823 TolB Periplasmic compo 47.8 2.6E+02 0.0057 26.8 17.1 108 172-287 260-368 (425)
219 KOG0263 Transcription initiati 47.5 2.2E+02 0.0049 28.9 10.4 104 155-279 544-650 (707)
220 KOG0306 WD40-repeat-containing 46.9 3.4E+02 0.0074 27.9 15.0 164 175-367 44-218 (888)
221 KOG0299 U3 snoRNP-associated p 46.4 2.7E+02 0.0059 26.6 14.6 143 150-323 207-358 (479)
222 PF15525 DUF4652: Domain of un 45.0 1.8E+02 0.004 24.2 11.2 67 221-287 87-157 (200)
223 KOG0639 Transducin-like enhanc 44.9 3.1E+02 0.0066 26.8 11.6 66 204-281 475-542 (705)
224 KOG0279 G protein beta subunit 44.7 2.3E+02 0.005 25.3 14.1 156 200-372 69-226 (315)
225 KOG1445 Tumor-specific antigen 44.5 68 0.0015 31.9 6.3 58 313-371 742-799 (1012)
226 KOG1538 Uncharacterized conser 44.4 3.6E+02 0.0078 27.4 18.1 50 155-215 23-74 (1081)
227 PF13013 F-box-like_2: F-box-l 44.2 25 0.00053 26.4 2.7 29 53-81 22-50 (109)
228 KOG0306 WD40-repeat-containing 43.8 3.8E+02 0.0083 27.6 15.3 166 175-359 395-573 (888)
229 KOG4378 Nuclear protein COP1 [ 43.6 3.2E+02 0.0069 26.6 11.8 86 271-369 188-279 (673)
230 KOG0272 U4/U6 small nuclear ri 40.8 3.2E+02 0.007 25.9 10.0 97 252-359 313-411 (459)
231 PF14781 BBS2_N: Ciliary BBSom 40.3 98 0.0021 24.2 5.5 64 156-237 63-134 (136)
232 KOG0305 Anaphase promoting com 40.3 3.7E+02 0.0079 26.3 18.2 185 150-358 263-453 (484)
233 KOG0973 Histone transcription 39.2 5.1E+02 0.011 27.7 13.2 22 253-280 140-161 (942)
234 PF02239 Cytochrom_D1: Cytochr 38.6 3.4E+02 0.0073 25.5 17.9 181 119-326 16-207 (369)
235 PF03022 MRJP: Major royal jel 38.1 3E+02 0.0065 24.7 22.4 194 155-357 10-256 (287)
236 PF11134 Phage_stabilise: Phag 38.0 3.7E+02 0.0081 25.8 11.8 138 199-352 186-349 (469)
237 KOG3881 Uncharacterized conser 37.5 3.5E+02 0.0076 25.3 14.4 146 156-323 160-322 (412)
238 PF11768 DUF3312: Protein of u 36.1 4.4E+02 0.0096 26.1 10.9 98 114-233 231-332 (545)
239 KOG2048 WD40 repeat protein [G 35.7 4.8E+02 0.01 26.4 20.0 63 155-232 35-100 (691)
240 PF14298 DUF4374: Domain of un 35.6 4.1E+02 0.0089 25.5 12.4 61 312-372 366-426 (435)
241 PF15525 DUF4652: Domain of un 35.2 2.7E+02 0.0058 23.3 11.8 83 170-252 84-170 (200)
242 PF03088 Str_synth: Strictosid 34.6 99 0.0021 22.2 4.5 50 271-321 38-87 (89)
243 KOG3881 Uncharacterized conser 34.3 4E+02 0.0086 25.0 12.7 96 172-281 224-323 (412)
244 KOG0282 mRNA splicing factor [ 32.7 4.6E+02 0.01 25.3 11.0 175 157-354 227-413 (503)
245 KOG1897 Damage-specific DNA bi 32.6 6.5E+02 0.014 27.0 15.7 151 157-320 787-943 (1096)
246 PF08950 DUF1861: Protein of u 32.2 2.6E+02 0.0056 25.0 7.3 60 250-310 33-95 (298)
247 PF13088 BNR_2: BNR repeat-lik 31.4 3.6E+02 0.0077 23.6 16.6 151 205-356 58-227 (275)
248 KOG0274 Cdc4 and related F-box 31.0 5.5E+02 0.012 25.6 22.2 164 174-359 311-475 (537)
249 PRK10115 protease 2; Provision 30.5 6.3E+02 0.014 26.1 22.3 148 173-330 246-403 (686)
250 KOG1445 Tumor-specific antigen 30.0 4.2E+02 0.0091 26.8 9.0 58 222-281 742-801 (1012)
251 KOG0640 mRNA cleavage stimulat 27.8 4.7E+02 0.01 23.8 9.3 110 104-233 227-338 (430)
252 KOG0293 WD40 repeat-containing 27.6 5.4E+02 0.012 24.5 15.7 134 175-328 292-430 (519)
253 smart00155 PLDc Phospholipase 26.7 91 0.002 16.5 2.5 20 338-357 4-23 (28)
254 PF09372 PRANC: PRANC domain; 25.9 51 0.0011 24.0 1.9 26 50-75 69-94 (97)
255 smart00564 PQQ beta-propeller 25.7 1.2E+02 0.0026 16.3 4.1 24 251-281 4-27 (33)
256 KOG0646 WD40 repeat protein [G 25.1 6.2E+02 0.014 24.4 9.1 58 199-264 85-145 (476)
257 PF08950 DUF1861: Protein of u 24.7 2.3E+02 0.005 25.3 5.8 59 203-262 34-95 (298)
258 PF05262 Borrelia_P83: Borreli 24.5 6.8E+02 0.015 24.6 9.8 97 221-321 374-472 (489)
259 PF08662 eIF2A: Eukaryotic tra 24.4 4.2E+02 0.009 22.1 11.2 65 104-184 71-135 (194)
260 PF05262 Borrelia_P83: Borreli 24.3 6.3E+02 0.014 24.8 9.2 62 172-236 373-434 (489)
261 KOG0265 U5 snRNP-specific prot 22.7 5.8E+02 0.013 23.1 12.4 59 155-235 57-125 (338)
262 KOG1273 WD40 repeat protein [G 22.4 6.1E+02 0.013 23.2 15.9 63 155-233 33-98 (405)
263 PF11768 DUF3312: Protein of u 22.3 6.4E+02 0.014 25.0 8.8 107 253-369 218-328 (545)
264 COG3823 Glutamine cyclotransfe 22.2 5.1E+02 0.011 22.3 9.1 96 248-355 50-148 (262)
265 PF14517 Tachylectin: Tachylec 21.5 3.7E+02 0.008 23.3 6.4 156 148-325 36-210 (229)
266 PF03022 MRJP: Major royal jel 21.1 6.1E+02 0.013 22.8 11.0 99 104-209 11-124 (287)
267 PF00614 PLDc: Phospholipase D 20.5 98 0.0021 16.7 1.8 17 341-357 7-23 (28)
268 PF15492 Nbas_N: Neuroblastoma 20.4 6.3E+02 0.014 22.6 11.9 36 205-242 158-193 (282)
269 COG3391 Uncharacterized conser 20.4 7.2E+02 0.016 23.3 18.5 154 148-324 77-242 (381)
270 KOG1428 Inhibitor of type V ad 20.3 2.7E+02 0.0058 31.4 6.2 48 252-309 496-543 (3738)
271 TIGR02608 delta_60_rpt delta-6 20.0 2.6E+02 0.0055 18.0 4.1 31 152-182 7-37 (55)
272 KOG0646 WD40 repeat protein [G 20.0 7.9E+02 0.017 23.7 14.8 51 156-216 91-145 (476)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.1e-44 Score=350.11 Aligned_cols=320 Identities=24% Similarity=0.373 Sum_probs=257.5
Q ss_pred CCCCCcHHHHHHhhccCcc--c--hhhhhhhccHhHHHhhcCchHhHHHHhhcC-CCCCeEEEEEEeCC--CCceeEEEe
Q 040145 52 FIPGLPDDVALNCLLRLPV--E--SHAACRAVCKRWHLLLGNKERFFTRRKELG-FKDPWLFVFAFHKC--TGKIQWQVL 124 (402)
Q Consensus 52 ~~~~Lp~dl~~~il~rlp~--~--~l~~~~~v~k~W~~l~~s~~~~~~~r~~~~-~~~~~l~~~gg~~~--~~~~~~~~~ 124 (402)
.++-||...+.+++...+. . ....+-...++|+.+..........|.... ...+.||++||... .....+..|
T Consensus 227 r~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~r~~~~~~l~~vGG~~~~~~~~~~ve~y 306 (571)
T KOG4441|consen 227 RLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSPRTRPRRSVSGKLVAVGGYNRQGQSLRSVECY 306 (571)
T ss_pred CccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccCccccCCCcccCcCCCCeEEEECCCCCCCcccceeEEe
Confidence 3356666666665554431 1 111111223345555442201222233322 45688999998764 556778999
Q ss_pred ecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE
Q 040145 125 DLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI 204 (402)
Q Consensus 125 d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~ 204 (402)
||.++.|..+++|+.++ ..++++++ ++.||++||.+. +...++++++|||.+++|+.+++|..+|..++++++
T Consensus 307 d~~~~~w~~~a~m~~~r----~~~~~~~~--~~~lYv~GG~~~-~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l 379 (571)
T KOG4441|consen 307 DPKTNEWSSLAPMPSPR----CRVGVAVL--NGKLYVVGGYDS-GSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL 379 (571)
T ss_pred cCCcCcEeecCCCCccc----ccccEEEE--CCEEEEEccccC-CCcccceEEEecCCCCceeccCCccCccccceeEEE
Confidence 99999999999999665 56777777 999999999974 446789999999999999999999999999999999
Q ss_pred CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeee
Q 040145 205 GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES 284 (402)
Q Consensus 205 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~ 284 (402)
+|+||++||.++... ++++|+|||.++.|+.+++|+..|.++++++++|+||++||..+....++++++|||.+++|+.
T Consensus 380 ~g~iYavGG~dg~~~-l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~ 458 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKS-LNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTL 458 (571)
T ss_pred CCEEEEEeccccccc-cccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceee
Confidence 999999999997766 8999999999999999999999999999999999999999998776678899999999999999
Q ss_pred ccccccCCCceeE-EEECCEEEEEeccC----CcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCc-e
Q 040145 285 MAVGLREGWTGSS-VVVYEHLFVVSELE----RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNL-H 358 (402)
Q Consensus 285 ~~~~~~~~~~~~~-~~~~~~l~~~gg~~----~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~-~ 358 (402)
+++ |+.+|.+++ ++++++||++||.+ ...+++|||.+++|+.+..++.+ |..+++++.+++||++||.+ +
T Consensus 459 ~~~-M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~---rs~~g~~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 459 IAP-MNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP---RSAVGVVVLGGKLYAVGGFDGN 534 (571)
T ss_pred cCC-cccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccc---cccccEEEECCEEEEEecccCc
Confidence 998 777776666 78999999999987 35699999999999999855544 77889999999999999976 5
Q ss_pred eeeEEEEecccccccCceeeeEEEEeCCCCC
Q 040145 359 VAVGHITRLSTSEKKWSFSVQWQVVDAPDNF 389 (402)
Q Consensus 359 ~~~~~v~~~~~~~~~~~~~~~W~~~~~~~~~ 389 (402)
...+.|.+|||..+ +|.....|...
T Consensus 535 ~~l~~ve~ydp~~d------~W~~~~~~~~~ 559 (571)
T KOG4441|consen 535 NNLNTVECYDPETD------TWTEVTEPESG 559 (571)
T ss_pred cccceeEEcCCCCC------ceeeCCCcccc
Confidence 56799999999888 88887773333
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=2.4e-41 Score=328.58 Aligned_cols=263 Identities=17% Similarity=0.278 Sum_probs=214.6
Q ss_pred CeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCC
Q 040145 105 PWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKN 184 (402)
Q Consensus 105 ~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~ 184 (402)
..+++.+|........+.+||+.+++|..+++||.++ ..++++++ ++.||++||.... ....+++++|||.++
T Consensus 258 ~~l~~~~g~~~~~~~~v~~yd~~~~~W~~l~~mp~~r----~~~~~a~l--~~~IYviGG~~~~-~~~~~~v~~Yd~~~n 330 (557)
T PHA02713 258 LCLVCHDTKYNVCNPCILVYNINTMEYSVISTIPNHI----INYASAIV--DNEIIIAGGYNFN-NPSLNKVYKINIENK 330 (557)
T ss_pred eEEEEecCccccCCCCEEEEeCCCCeEEECCCCCccc----cceEEEEE--CCEEEEEcCCCCC-CCccceEEEEECCCC
Confidence 3455544421112235789999999999999998554 55666666 9999999997422 235789999999999
Q ss_pred ceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEccccc
Q 040145 185 RWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLW 264 (402)
Q Consensus 185 ~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~ 264 (402)
+|..+++|+.+|..+++++++++||++||.++... .+++++|||.+++|+.+++||.+|..+++++++|+||++||..+
T Consensus 331 ~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~-~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~ 409 (557)
T PHA02713 331 IHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNV-ERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTE 409 (557)
T ss_pred eEeeCCCCcchhhceeEEEECCEEEEECCcCCCCC-CceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCc
Confidence 99999999999999999999999999999865544 78899999999999999999999999999999999999999753
Q ss_pred CC-----------------ccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccC-----CcEEEEEeCC
Q 040145 265 PF-----------------FVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELE-----RMKLKVYDPS 321 (402)
Q Consensus 265 ~~-----------------~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~-----~~~~~~yd~~ 321 (402)
.. ...+.+++|||.+++|+.+++ ++.++..++ ++++|+||++||.+ ...+++|||.
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~-m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~ 488 (557)
T PHA02713 410 HIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPN-FWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTN 488 (557)
T ss_pred ccccccccccccccccccccccceEEEECCCCCeEeecCC-CCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCC
Confidence 21 124679999999999999987 666555554 78999999999974 2358999999
Q ss_pred C-CceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEecccccccCceeeeEEEEeCCC
Q 040145 322 T-DSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVVDAPD 387 (402)
Q Consensus 322 ~-~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W~~~~~~~ 387 (402)
+ ++|+.++. +|.. |..+++++.+|+||++||.+.. ..+++||+.++ +|..+.+-+
T Consensus 489 ~~~~W~~~~~--m~~~-r~~~~~~~~~~~iyv~Gg~~~~--~~~e~yd~~~~------~W~~~~~~~ 544 (557)
T PHA02713 489 TYNGWELITT--TESR-LSALHTILHDNTIMMLHCYESY--MLQDTFNVYTY------EWNHICHQH 544 (557)
T ss_pred CCCCeeEccc--cCcc-cccceeEEECCEEEEEeeecce--eehhhcCcccc------cccchhhhc
Confidence 9 89999994 5433 7788999999999999997653 47999999888 777766644
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=9e-39 Score=309.11 Aligned_cols=261 Identities=26% Similarity=0.416 Sum_probs=220.9
Q ss_pred cchhhhhhhccHhHHHhhcCchHhHHHHhhcCCCCCeEEEEEEeCC--CCceeEEEeecCCCcEEeCCCCCCCCCCCCCC
Q 040145 70 VESHAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFAFHKC--TGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHG 147 (402)
Q Consensus 70 ~~~l~~~~~v~k~W~~l~~s~~~~~~~r~~~~~~~~~l~~~gg~~~--~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~ 147 (402)
......+....+.|..+...| . ...+...+..++.||++||.+. .....+++|||.+++|..+++|..++ ..
T Consensus 300 ~~~ve~yd~~~~~w~~~a~m~-~-~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R----~~ 373 (571)
T KOG4441|consen 300 LRSVECYDPKTNEWSSLAPMP-S-PRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKR----SD 373 (571)
T ss_pred cceeEEecCCcCcEeecCCCC-c-ccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcc----cc
Confidence 345555667777899988766 1 1223345567999999999873 45678999999999999999999666 88
Q ss_pred ceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEE
Q 040145 148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVL 227 (402)
Q Consensus 148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y 227 (402)
++.+++ +|.||++||.+ +....+++++|||.+++|+..++|+.+|..+++++++++||++||.++....++++++|
T Consensus 374 ~~v~~l--~g~iYavGG~d--g~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~Y 449 (571)
T KOG4441|consen 374 FGVAVL--DGKLYAVGGFD--GEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECY 449 (571)
T ss_pred ceeEEE--CCEEEEEeccc--cccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEE
Confidence 888888 99999999996 44688899999999999999999999999999999999999999998877559999999
Q ss_pred cCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEE
Q 040145 228 DPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFV 306 (402)
Q Consensus 228 d~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~ 306 (402)
||.|++|+.+++|+.+|.++++++++++||++||.++ ......+++||+.+++|+.+++ +..++.+.. ++.++++|+
T Consensus 450 DP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~-~~~~~~VE~ydp~~~~W~~v~~-m~~~rs~~g~~~~~~~ly~ 527 (571)
T KOG4441|consen 450 DPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDG-TSALSSVERYDPETNQWTMVAP-MTSPRSAVGVVVLGGKLYA 527 (571)
T ss_pred cCCCCceeecCCcccccccceEEEECCEEEEECCccC-CCccceEEEEcCCCCceeEccc-CccccccccEEEECCEEEE
Confidence 9999999999999999999999999999999999987 4445679999999999999976 666666555 789999999
Q ss_pred EeccC----CcEEEEEeCCCCceeecCCCCCCccccCCeEEEE
Q 040145 307 VSELE----RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA 345 (402)
Q Consensus 307 ~gg~~----~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~ 345 (402)
+||.+ .+.+..|||++++|+... + +...+..+++++
T Consensus 528 vGG~~~~~~l~~ve~ydp~~d~W~~~~--~-~~~~~~~~~~~~ 567 (571)
T KOG4441|consen 528 VGGFDGNNNLNTVECYDPETDTWTEVT--E-PESGRGGAGVAV 567 (571)
T ss_pred EecccCccccceeEEcCCCCCceeeCC--C-ccccccCcceEE
Confidence 99987 468999999999999998 4 433355544444
No 4
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=4.2e-37 Score=284.20 Aligned_cols=284 Identities=19% Similarity=0.268 Sum_probs=209.2
Q ss_pred hHHHhhcCchHhHHHHhh--cCCCCCeEEEEEEeCCC---CceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccC
Q 040145 82 RWHLLLGNKERFFTRRKE--LGFKDPWLFVFAFHKCT---GKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPRE 156 (402)
Q Consensus 82 ~W~~l~~s~~~~~~~r~~--~~~~~~~l~~~gg~~~~---~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~ 156 (402)
.|..+....+..+..|.. +...++.||++||.... ...++++||+.+++|..+++++..++.....++++++ +
T Consensus 8 ~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~ 85 (341)
T PLN02153 8 GWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--G 85 (341)
T ss_pred eEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--C
Confidence 366665522122334443 34458899999986421 2347999999999999988775332211224555665 9
Q ss_pred CEEEEEeCccCCCCCCCceEEEEECCCCceeecCCC-----cccccceEEEEECCEEEEEcCCCCCC-----CCCCeeEE
Q 040145 157 GTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKM-----ITARSFFASGVIGGMIYVAGGSSADL-----FELDSAEV 226 (402)
Q Consensus 157 ~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~-----~~~r~~~~~~~~~~~iyv~GG~~~~~-----~~~~~~~~ 226 (402)
++||++||.... ...+++++||+.+++|+.++++ |.+|..|++++++++|||+||.+... ...+++++
T Consensus 86 ~~iyv~GG~~~~--~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 86 TKLYIFGGRDEK--REFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CEEEEECCCCCC--CccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEE
Confidence 999999998543 3567999999999999999877 78899999999999999999985432 12468999
Q ss_pred EcCCCCcEEEcCCCC---CCCcceeEEEECCEEEEEcccccC-------CccCCcEEEEeCCCCCeeeccc--cccCCCc
Q 040145 227 LDPVKGNWRTIASMG---TNMASYDAAVLDGKLLVTEGWLWP-------FFVSPRGQVYDPSTDNWESMAV--GLREGWT 294 (402)
Q Consensus 227 yd~~t~~W~~~~~~~---~~~~~~~~~~~~g~ly~~gG~~~~-------~~~~~~~~~yd~~~~~W~~~~~--~~~~~~~ 294 (402)
||+++++|+.++.+. .+|..+++++++++||++||.... ....+.+++||+.+++|++++. .+|.++.
T Consensus 164 yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~ 243 (341)
T PLN02153 164 YNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARS 243 (341)
T ss_pred EECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcc
Confidence 999999999997654 678889899999999999986421 1224689999999999999874 2455555
Q ss_pred eeE-EEECCEEEEEeccC-------------CcEEEEEeCCCCceeecCCC---CCCccccCCeEEEEe-CCEEEEEecC
Q 040145 295 GSS-VVVYEHLFVVSELE-------------RMKLKVYDPSTDSWETIEGP---PLPEQICKPFAVNAC-DCRVYVVGRN 356 (402)
Q Consensus 295 ~~~-~~~~~~l~~~gg~~-------------~~~~~~yd~~~~~W~~~~~~---~~p~~~~~~~~~~~~-~~~i~v~GG~ 356 (402)
.++ ++++++||++||.. .+++++||+++++|+.+... ++|+.....+++.+. +++|||+||.
T Consensus 244 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~ 323 (341)
T PLN02153 244 VFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGK 323 (341)
T ss_pred eeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCc
Confidence 554 78899999999962 24899999999999998642 455432222334444 4589999997
Q ss_pred ce--eeeEEEEeccc
Q 040145 357 LH--VAVGHITRLST 369 (402)
Q Consensus 357 ~~--~~~~~v~~~~~ 369 (402)
.. ....|++.|+.
T Consensus 324 ~~~~~~~~~~~~~~~ 338 (341)
T PLN02153 324 LPTNERTDDLYFYAV 338 (341)
T ss_pred CCCCccccceEEEec
Confidence 54 46688888863
No 5
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=6.5e-37 Score=300.15 Aligned_cols=256 Identities=16% Similarity=0.259 Sum_probs=211.5
Q ss_pred eeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccc
Q 040145 119 IQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSF 198 (402)
Q Consensus 119 ~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~ 198 (402)
.....|++..++|..+++.+. ...++++++ ++.||++||..... ...+++++||+.+++|+.+++|+.+|..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--~~~lyv~GG~~~~~-~~~~~v~~yd~~~~~W~~~~~~~~~R~~ 335 (534)
T PHA03098 264 YNYITNYSPLSEINTIIDIHY-----VYCFGSVVL--NNVIYFIGGMNKNN-LSVNSVVSYDTKTKSWNKVPELIYPRKN 335 (534)
T ss_pred ceeeecchhhhhcccccCccc-----cccceEEEE--CCEEEEECCCcCCC-CeeccEEEEeCCCCeeeECCCCCccccc
Confidence 345678888899998876552 133566666 99999999985432 3567899999999999999999999999
Q ss_pred eEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCC
Q 040145 199 FASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPS 278 (402)
Q Consensus 199 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~ 278 (402)
++++.++++||++||.+.... .+++++||+.+++|+.++++|.+|..+++++++++||++||........+.+++||+.
T Consensus 336 ~~~~~~~~~lyv~GG~~~~~~-~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~ 414 (534)
T PHA03098 336 PGVTVFNNRIYVIGGIYNSIS-LNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLN 414 (534)
T ss_pred ceEEEECCEEEEEeCCCCCEe-cceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCC
Confidence 999999999999999875444 7889999999999999999999999999999999999999975444446789999999
Q ss_pred CCCeeeccccccCCCceeE-EEECCEEEEEeccC-------CcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEE
Q 040145 279 TDNWESMAVGLREGWTGSS-VVVYEHLFVVSELE-------RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRV 350 (402)
Q Consensus 279 ~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~-------~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i 350 (402)
+++|+.+++ +|.++.+++ ++.+++||++||.+ .+.+++||+.+++|+.++.++.| +..++++..+++|
T Consensus 415 t~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~---r~~~~~~~~~~~i 490 (534)
T PHA03098 415 TNKWSKGSP-LPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP---RINASLCIFNNKI 490 (534)
T ss_pred CCeeeecCC-CCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc---cccceEEEECCEE
Confidence 999999986 555555554 78899999999964 23599999999999999855444 6667888889999
Q ss_pred EEEecCceee-eEEEEecccccccCceeeeEEEEeCCCCCCCcc
Q 040145 351 YVVGRNLHVA-VGHITRLSTSEKKWSFSVQWQVVDAPDNFSDLT 393 (402)
Q Consensus 351 ~v~GG~~~~~-~~~v~~~~~~~~~~~~~~~W~~~~~~~~~~~~~ 393 (402)
||+||..... .++++.||+..+ .|+.++.++++.+..
T Consensus 491 yv~GG~~~~~~~~~v~~yd~~~~------~W~~~~~~p~~~~~~ 528 (534)
T PHA03098 491 YVVGGDKYEYYINEIEVYDDKTN------TWTLFCKFPKVIGSL 528 (534)
T ss_pred EEEcCCcCCcccceeEEEeCCCC------EEEecCCCcccccce
Confidence 9999976443 678999999777 899998877766543
No 6
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=9.2e-36 Score=275.28 Aligned_cols=249 Identities=15% Similarity=0.207 Sum_probs=192.3
Q ss_pred cCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCc-ccc---cceEE
Q 040145 126 LTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMI-TAR---SFFAS 201 (402)
Q Consensus 126 ~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~-~~r---~~~~~ 201 (402)
+...+|.++.......+..+..++++++ +++||++||.........+++++||+.+++|+.+++++ .+| ..+++
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~ 81 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVV--GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRM 81 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEE--CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEE
Confidence 3567799987732211123366777776 99999999985433334679999999999999988764 344 36788
Q ss_pred EEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCC-----CCCCcceeEEEECCEEEEEcccccCC-----ccCCc
Q 040145 202 GVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASM-----GTNMASYDAAVLDGKLLVTEGWLWPF-----FVSPR 271 (402)
Q Consensus 202 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-----~~~~~~~~~~~~~g~ly~~gG~~~~~-----~~~~~ 271 (402)
++++++||++||.+.... .+++++||+.+++|+.++++ |.+|..+++++++++||++||..... ...+.
T Consensus 82 ~~~~~~iyv~GG~~~~~~-~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 160 (341)
T PLN02153 82 VAVGTKLYIFGGRDEKRE-FSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRT 160 (341)
T ss_pred EEECCEEEEECCCCCCCc-cCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccce
Confidence 999999999999876554 78899999999999999877 78899999999999999999976321 12457
Q ss_pred EEEEeCCCCCeeecccc--ccCCCceeE-EEECCEEEEEeccC------------CcEEEEEeCCCCceeecCCCC-CCc
Q 040145 272 GQVYDPSTDNWESMAVG--LREGWTGSS-VVVYEHLFVVSELE------------RMKLKVYDPSTDSWETIEGPP-LPE 335 (402)
Q Consensus 272 ~~~yd~~~~~W~~~~~~--~~~~~~~~~-~~~~~~l~~~gg~~------------~~~~~~yd~~~~~W~~~~~~~-~p~ 335 (402)
+++||+++++|+.++.. .+.++.+++ ++++++||++||.. .+.+++||+.+++|++++... +|.
T Consensus 161 v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~ 240 (341)
T PLN02153 161 IEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPS 240 (341)
T ss_pred EEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCC
Confidence 99999999999998752 224454444 68899999998853 357999999999999987432 332
Q ss_pred cccCCeEEEEeCCEEEEEecCc----------eeeeEEEEecccccccCceeeeEEEEe
Q 040145 336 QICKPFAVNACDCRVYVVGRNL----------HVAVGHITRLSTSEKKWSFSVQWQVVD 384 (402)
Q Consensus 336 ~~~~~~~~~~~~~~i~v~GG~~----------~~~~~~v~~~~~~~~~~~~~~~W~~~~ 384 (402)
.|..+++++.+++|||+||.. ....++++.||+..+ .|+++.
T Consensus 241 -~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~------~W~~~~ 292 (341)
T PLN02153 241 -ARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL------VWEKLG 292 (341)
T ss_pred -CcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc------EEEecc
Confidence 377788999999999999963 123468999999777 888774
No 7
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=4.8e-37 Score=298.52 Aligned_cols=245 Identities=14% Similarity=0.193 Sum_probs=201.8
Q ss_pred hhhhhccHhHHHhhcCchHhHHHHhhcCCCCCeEEEEEEeC--CCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEE
Q 040145 74 AACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFAFHK--CTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCV 151 (402)
Q Consensus 74 ~~~~~v~k~W~~l~~s~~~~~~~r~~~~~~~~~l~~~gg~~--~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~ 151 (402)
.++....++|..+...| . .......+..++.||++||.. ......+++|||.+++|..+++|+.++ ..++++
T Consensus 275 ~~yd~~~~~W~~l~~mp-~-~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R----~~~~~~ 348 (557)
T PHA02713 275 LVYNINTMEYSVISTIP-N-HIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNR----CRFSLA 348 (557)
T ss_pred EEEeCCCCeEEECCCCC-c-cccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchh----hceeEE
Confidence 34556677899887666 2 122233455689999999863 233567899999999999999999655 667777
Q ss_pred EEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCC-------------
Q 040145 152 SIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADL------------- 218 (402)
Q Consensus 152 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~------------- 218 (402)
++ +++||++||.++. ...+++++|||.+++|+.+++||.+|..+++++++++||++||.++..
T Consensus 349 ~~--~g~IYviGG~~~~--~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~ 424 (557)
T PHA02713 349 VI--DDTIYAIGGQNGT--NVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDM 424 (557)
T ss_pred EE--CCEEEEECCcCCC--CCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccc
Confidence 77 9999999998533 356789999999999999999999999999999999999999985421
Q ss_pred ----CCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCC-CCeeeccccccCCC
Q 040145 219 ----FELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPST-DNWESMAVGLREGW 293 (402)
Q Consensus 219 ----~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~-~~W~~~~~~~~~~~ 293 (402)
...+++++|||.+++|+.+++|+.+|..+++++++|+||++||..+.....+.+++|||.+ ++|+.+++ ++.++
T Consensus 425 ~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~-m~~~r 503 (557)
T PHA02713 425 EEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT-TESRL 503 (557)
T ss_pred cccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc-cCccc
Confidence 1257899999999999999999999999999999999999999864433334689999999 89999987 77776
Q ss_pred ceeE-EEECCEEEEEeccCC-cEEEEEeCCCCceeecC
Q 040145 294 TGSS-VVVYEHLFVVSELER-MKLKVYDPSTDSWETIE 329 (402)
Q Consensus 294 ~~~~-~~~~~~l~~~gg~~~-~~~~~yd~~~~~W~~~~ 329 (402)
.... ++++|+||++||.++ ..+++||+.+++|+.+.
T Consensus 504 ~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 504 SALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHIC 541 (557)
T ss_pred ccceeEEECCEEEEEeeecceeehhhcCcccccccchh
Confidence 6665 789999999999763 47999999999999887
No 8
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1.9e-35 Score=271.32 Aligned_cols=248 Identities=15% Similarity=0.201 Sum_probs=194.9
Q ss_pred CCCCCeEEEEEEeCCCC-----------ceeEEEee-cCCC-cEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccC
Q 040145 101 GFKDPWLFVFAFHKCTG-----------KIQWQVLD-LTHY-CWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVS 167 (402)
Q Consensus 101 ~~~~~~l~~~gg~~~~~-----------~~~~~~~d-~~~~-~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~ 167 (402)
+..++.||++||.+... ..++++|+ +..+ +|..+++||.++ ..++++++ ++.||++||.+.
T Consensus 10 ~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r----~~~~~~~~--~~~lyviGG~~~ 83 (323)
T TIGR03548 10 GIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEA----AYGASVSV--ENGIYYIGGSNS 83 (323)
T ss_pred eEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccc----cceEEEEE--CCEEEEEcCCCC
Confidence 44688999999864321 13567775 4323 799999888554 45556665 999999999854
Q ss_pred CCCCCCceEEEEECCCCce----eecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCC-
Q 040145 168 DVDCPLDLVLKYEMQKNRW----TVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGT- 242 (402)
Q Consensus 168 ~~~~~~~~~~~~d~~t~~W----~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~- 242 (402)
. ...+++++||+.+++| +.+++||.+|..+++++++++||++||...... .+++++||+.+++|+.++++|.
T Consensus 84 ~--~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~-~~~v~~yd~~~~~W~~~~~~p~~ 160 (323)
T TIGR03548 84 S--ERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKP-SNKSYLFNLETQEWFELPDFPGE 160 (323)
T ss_pred C--CCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCcc-CceEEEEcCCCCCeeECCCCCCC
Confidence 3 3578999999999988 778999999999999999999999999854444 7899999999999999998884
Q ss_pred CCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeecccc----ccCCCcee-E-EEECCEEEEEeccCC----
Q 040145 243 NMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVG----LREGWTGS-S-VVVYEHLFVVSELER---- 312 (402)
Q Consensus 243 ~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~----~~~~~~~~-~-~~~~~~l~~~gg~~~---- 312 (402)
+|..+.+++++++||++||..+.. ..++++||+++++|+.+++. .|..+... + +..+++||++||.+.
T Consensus 161 ~r~~~~~~~~~~~iYv~GG~~~~~--~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~ 238 (323)
T TIGR03548 161 PRVQPVCVKLQNELYVFGGGSNIA--YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYN 238 (323)
T ss_pred CCCcceEEEECCEEEEEcCCCCcc--ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHH
Confidence 788888889999999999975432 24689999999999998752 22222222 2 345799999999751
Q ss_pred --------------------------------cEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCceee
Q 040145 313 --------------------------------MKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVA 360 (402)
Q Consensus 313 --------------------------------~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~ 360 (402)
+.+++||+.+++|+.++ ++|...|..++++..+++||++||..+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~--~~p~~~r~~~~~~~~~~~iyv~GG~~~pg 316 (323)
T TIGR03548 239 DAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIG--NSPFFARCGAALLLTGNNIFSINGELKPG 316 (323)
T ss_pred HHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcc--cccccccCchheEEECCEEEEEeccccCC
Confidence 47999999999999998 45544478888999999999999976654
Q ss_pred e
Q 040145 361 V 361 (402)
Q Consensus 361 ~ 361 (402)
.
T Consensus 317 ~ 317 (323)
T TIGR03548 317 V 317 (323)
T ss_pred c
Confidence 4
No 9
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=8.6e-35 Score=278.33 Aligned_cols=271 Identities=15% Similarity=0.167 Sum_probs=208.3
Q ss_pred CCCeEEEEEEeCCCCcee--EEEeecCC----CcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceE
Q 040145 103 KDPWLFVFAFHKCTGKIQ--WQVLDLTH----YCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLV 176 (402)
Q Consensus 103 ~~~~l~~~gg~~~~~~~~--~~~~d~~~----~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~ 176 (402)
.++.|+.|.|........ ++.+++.+ ++|..+.++... +..|..++++++ ++.||++||.........+++
T Consensus 119 ~~~~ivgf~G~~~~~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~-P~pR~~h~~~~~--~~~iyv~GG~~~~~~~~~~~v 195 (470)
T PLN02193 119 QGGKIVGFHGRSTDVLHSLGAYISLPSTPKLLGKWIKVEQKGEG-PGLRCSHGIAQV--GNKIYSFGGEFTPNQPIDKHL 195 (470)
T ss_pred cCCeEEEEeccCCCcEEeeEEEEecCCChhhhceEEEcccCCCC-CCCccccEEEEE--CCEEEEECCcCCCCCCeeCcE
Confidence 467788887765444444 34557655 789998864311 124477777777 999999999854332345689
Q ss_pred EEEECCCCceeecCCC---cc-cccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCC---CCCCcceeE
Q 040145 177 LKYEMQKNRWTVMNKM---IT-ARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASM---GTNMASYDA 249 (402)
Q Consensus 177 ~~~d~~t~~W~~~~~~---~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~---~~~~~~~~~ 249 (402)
++||+.+++|+.++.+ |. .|..+++++++++||++||.+.... .+++++||+.+++|+.++++ |.+|..|++
T Consensus 196 ~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~-~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~ 274 (470)
T PLN02193 196 YVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQ-YNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSM 274 (470)
T ss_pred EEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCC-CccEEEEECCCCEEEEcCcCCCCCCCccceEE
Confidence 9999999999987643 33 3567888999999999999876544 78999999999999999877 789999999
Q ss_pred EEECCEEEEEcccccCCccCCcEEEEeCCCCCeeecccc--ccCCCceeE-EEECCEEEEEeccC---CcEEEEEeCCCC
Q 040145 250 AVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVG--LREGWTGSS-VVVYEHLFVVSELE---RMKLKVYDPSTD 323 (402)
Q Consensus 250 ~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~--~~~~~~~~~-~~~~~~l~~~gg~~---~~~~~~yd~~~~ 323 (402)
++++++||++||..... ..+.+++||+.+++|+.++.+ ++..+.++. ++++++||++||.+ .+++++||++++
T Consensus 275 ~~~~~~iYv~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 275 AADEENVYVFGGVSATA-RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred EEECCEEEEECCCCCCC-CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCC
Confidence 99999999999986532 356899999999999998752 334454444 67899999999965 368999999999
Q ss_pred ceeecCCCCCCccccCCeEEEEeCCEEEEEecCce----------eeeEEEEecccccccCceeeeEEEEe
Q 040145 324 SWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLH----------VAVGHITRLSTSEKKWSFSVQWQVVD 384 (402)
Q Consensus 324 ~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~----------~~~~~v~~~~~~~~~~~~~~~W~~~~ 384 (402)
+|+++..+..++..|..++++.++++|||+||... ...++++.||+..+ +|+++.
T Consensus 354 ~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~------~W~~~~ 418 (470)
T PLN02193 354 KWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL------QWERLD 418 (470)
T ss_pred EEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcC------EEEEcc
Confidence 99999754222233778888999999999999642 23468999999777 788765
No 10
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=3.8e-35 Score=280.78 Aligned_cols=281 Identities=19% Similarity=0.194 Sum_probs=212.0
Q ss_pred HhHHHhhcCchHhHHHHhhc--CCCCCeEEEEEEeCC--C-CceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEcc
Q 040145 81 KRWHLLLGNKERFFTRRKEL--GFKDPWLFVFAFHKC--T-GKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPR 155 (402)
Q Consensus 81 k~W~~l~~s~~~~~~~r~~~--~~~~~~l~~~gg~~~--~-~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~ 155 (402)
.+|..+.... +.+..|..+ ...++.||++||... . ...++++||+.+++|..++.+...++..+..++++++
T Consensus 151 ~~W~~~~~~~-~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~-- 227 (470)
T PLN02193 151 GKWIKVEQKG-EGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI-- 227 (470)
T ss_pred ceEEEcccCC-CCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE--
Confidence 5798776543 344455544 345889999998632 1 2246999999999999877653222111234455555
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCC---cccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCC
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKM---ITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKG 232 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 232 (402)
+++||++||.... ...+++++||+.+++|+.++++ |.+|..|++++++++||++||.+.... .+++++||+.++
T Consensus 228 ~~~lYvfGG~~~~--~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~-~~~~~~yd~~t~ 304 (470)
T PLN02193 228 GSTLYVFGGRDAS--RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATAR-LKTLDSYNIVDK 304 (470)
T ss_pred CCEEEEECCCCCC--CCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCC-cceEEEEECCCC
Confidence 9999999998543 4678999999999999999887 789999999999999999999876554 788999999999
Q ss_pred cEEEcCC---CCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccc--cccCCCceeE-EEECCEEEE
Q 040145 233 NWRTIAS---MGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV--GLREGWTGSS-VVVYEHLFV 306 (402)
Q Consensus 233 ~W~~~~~---~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~--~~~~~~~~~~-~~~~~~l~~ 306 (402)
+|+.++. ++.+|..+.+++++++||++||..+. ..+.+++||+.+++|+.++. ..|.++..++ ++++++||+
T Consensus 305 ~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~--~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv 382 (470)
T PLN02193 305 KWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC--EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVI 382 (470)
T ss_pred EEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC--ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEE
Confidence 9999864 66788899999999999999997643 25789999999999999874 2344454444 788999999
Q ss_pred EeccC-------------CcEEEEEeCCCCceeecCCCC---CCccccCCeE--E-EEeC-CEEEEEecCc--eeeeEEE
Q 040145 307 VSELE-------------RMKLKVYDPSTDSWETIEGPP---LPEQICKPFA--V-NACD-CRVYVVGRNL--HVAVGHI 364 (402)
Q Consensus 307 ~gg~~-------------~~~~~~yd~~~~~W~~~~~~~---~p~~~~~~~~--~-~~~~-~~i~v~GG~~--~~~~~~v 364 (402)
+||.. .+++++||+.+++|+.+..++ .++..|..++ + ...+ +.|+++||.. +...+|+
T Consensus 383 ~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~ 462 (470)
T PLN02193 383 FGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDL 462 (470)
T ss_pred ECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccccccce
Confidence 99963 247999999999999987433 1233344442 2 2333 4599999974 5667999
Q ss_pred Eeccc
Q 040145 365 TRLST 369 (402)
Q Consensus 365 ~~~~~ 369 (402)
|.|++
T Consensus 463 ~~~~~ 467 (470)
T PLN02193 463 FFYGI 467 (470)
T ss_pred EEEec
Confidence 99865
No 11
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=1.2e-34 Score=268.96 Aligned_cols=255 Identities=20% Similarity=0.290 Sum_probs=192.8
Q ss_pred CCCCCeEEEEEEeCCCCceeEEEeec--CCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCC----CCCCc
Q 040145 101 GFKDPWLFVFAFHKCTGKIQWQVLDL--THYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDV----DCPLD 174 (402)
Q Consensus 101 ~~~~~~l~~~gg~~~~~~~~~~~~d~--~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~----~~~~~ 174 (402)
+..++.||++||... ..+++||+ .+++|.++++|+..+ +..++++++ +++||++||..... ....+
T Consensus 14 ~~~~~~vyv~GG~~~---~~~~~~d~~~~~~~W~~l~~~p~~~---R~~~~~~~~--~~~iYv~GG~~~~~~~~~~~~~~ 85 (346)
T TIGR03547 14 AIIGDKVYVGLGSAG---TSWYKLDLKKPSKGWQKIADFPGGP---RNQAVAAAI--DGKLYVFGGIGKANSEGSPQVFD 85 (346)
T ss_pred EEECCEEEEEccccC---CeeEEEECCCCCCCceECCCCCCCC---cccceEEEE--CCEEEEEeCCCCCCCCCcceecc
Confidence 345899999988632 46889986 578899999998422 255666666 99999999985322 12467
Q ss_pred eEEEEECCCCceeecC-CCcccccceEEE-EECCEEEEEcCCCCCC---------------------------------C
Q 040145 175 LVLKYEMQKNRWTVMN-KMITARSFFASG-VIGGMIYVAGGSSADL---------------------------------F 219 (402)
Q Consensus 175 ~~~~~d~~t~~W~~~~-~~~~~r~~~~~~-~~~~~iyv~GG~~~~~---------------------------------~ 219 (402)
++++|||.+++|+.++ ++|.+|..++++ +++++||++||.+... .
T Consensus 86 ~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (346)
T TIGR03547 86 DVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYF 165 (346)
T ss_pred cEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcC
Confidence 8999999999999987 456667677666 6899999999985320 0
Q ss_pred CCCeeEEEcCCCCcEEEcCCCCC-CCcceeEEEECCEEEEEcccccCCccCCcEEEEe--CCCCCeeeccccccCCC---
Q 040145 220 ELDSAEVLDPVKGNWRTIASMGT-NMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYD--PSTDNWESMAVGLREGW--- 293 (402)
Q Consensus 220 ~~~~~~~yd~~t~~W~~~~~~~~-~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd--~~~~~W~~~~~~~~~~~--- 293 (402)
..+.+++||+.+++|+.+++||. +|..+++++++++||++||..........++.|| +.+++|+.+++ ++.++
T Consensus 166 ~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~-m~~~r~~~ 244 (346)
T TIGR03547 166 WNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPP-LPPPKSSS 244 (346)
T ss_pred ccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCC-CCCCCCCc
Confidence 13789999999999999999986 6788888899999999999764333334555565 57789999886 44322
Q ss_pred ----cee-EEEECCEEEEEeccCC---------------------cEEEEEeCCCCceeecCCCCCCccccCCeEEEEeC
Q 040145 294 ----TGS-SVVVYEHLFVVSELER---------------------MKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACD 347 (402)
Q Consensus 294 ----~~~-~~~~~~~l~~~gg~~~---------------------~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~ 347 (402)
.++ +++++++||++||... ..+++||+++++|+.+.. +|.. +..+++++.+
T Consensus 245 ~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~--lp~~-~~~~~~~~~~ 321 (346)
T TIGR03547 245 QEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGK--LPQG-LAYGVSVSWN 321 (346)
T ss_pred cccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCC--CCCC-ceeeEEEEcC
Confidence 233 3678999999999631 268899999999999985 4433 5666777899
Q ss_pred CEEEEEecCc--eeeeEEEEec
Q 040145 348 CRVYVVGRNL--HVAVGHITRL 367 (402)
Q Consensus 348 ~~i~v~GG~~--~~~~~~v~~~ 367 (402)
|+|||+||.. .....+|+.+
T Consensus 322 ~~iyv~GG~~~~~~~~~~v~~~ 343 (346)
T TIGR03547 322 NGVLLIGGENSGGKAVTDVYLL 343 (346)
T ss_pred CEEEEEeccCCCCCEeeeEEEE
Confidence 9999999976 3456777765
No 12
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=2.9e-34 Score=275.44 Aligned_cols=202 Identities=17% Similarity=0.272 Sum_probs=173.8
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEE
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWR 235 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 235 (402)
++.||++||.+.. ...+.++.|||.+++|..+++|+.+|..+++++++++||++||.++ .+++++||+.+++|+
T Consensus 271 ~~~lyviGG~~~~--~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~----~~sve~ydp~~n~W~ 344 (480)
T PHA02790 271 GEVVYLIGGWMNN--EIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN----PTSVERWFHGDAAWV 344 (480)
T ss_pred CCEEEEEcCCCCC--CcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC----CCceEEEECCCCeEE
Confidence 8999999998532 3567899999999999999999999999999999999999999753 356899999999999
Q ss_pred EcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccCCcE
Q 040145 236 TIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELERMK 314 (402)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~~~~ 314 (402)
.+++||.+|..+++++++|+||++||..+. .+.+++||+.+++|+.+++ ++.++..++ ++++|+||++||.
T Consensus 345 ~~~~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~-m~~~r~~~~~~~~~~~IYv~GG~---- 416 (480)
T PHA02790 345 NMPSLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPS-TYYPHYKSCALVFGRRLFLVGRN---- 416 (480)
T ss_pred ECCCCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCC-CCCccccceEEEECCEEEEECCc----
Confidence 999999999999999999999999997532 2578999999999999987 655555554 6899999999984
Q ss_pred EEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCcee-eeEEEEecccccccC
Q 040145 315 LKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHV-AVGHITRLSTSEKKW 374 (402)
Q Consensus 315 ~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~-~~~~v~~~~~~~~~~ 374 (402)
+.+||+++++|+.++.++.| |..+++++.+|+||++||.... ....|++|||..+.|
T Consensus 417 ~e~ydp~~~~W~~~~~m~~~---r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 417 AEFYCESSNTWTLIDDPIYP---RDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred eEEecCCCCcEeEcCCCCCC---ccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 68999999999999854444 7788999999999999996532 247899999988843
No 13
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=4.9e-34 Score=266.54 Aligned_cols=260 Identities=19% Similarity=0.275 Sum_probs=195.3
Q ss_pred CCCCCeEEEEEEeCCCCceeEEEeecC--CCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCC----CCCCc
Q 040145 101 GFKDPWLFVFAFHKCTGKIQWQVLDLT--HYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDV----DCPLD 174 (402)
Q Consensus 101 ~~~~~~l~~~gg~~~~~~~~~~~~d~~--~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~----~~~~~ 174 (402)
...++.||++||... ..++.||+. +++|..+++++..+ +..++++++ ++.||++||..... ....+
T Consensus 35 ~~~~~~iyv~gG~~~---~~~~~~d~~~~~~~W~~l~~~p~~~---r~~~~~v~~--~~~IYV~GG~~~~~~~~~~~~~~ 106 (376)
T PRK14131 35 AIDNNTVYVGLGSAG---TSWYKLDLNAPSKGWTKIAAFPGGP---REQAVAAFI--DGKLYVFGGIGKTNSEGSPQVFD 106 (376)
T ss_pred EEECCEEEEEeCCCC---CeEEEEECCCCCCCeEECCcCCCCC---cccceEEEE--CCEEEEEcCCCCCCCCCceeEcc
Confidence 345889999987532 347889886 47899999887422 245566666 99999999985311 12467
Q ss_pred eEEEEECCCCceeecCC-CcccccceEEEE-ECCEEEEEcCCCCCC---------------------------------C
Q 040145 175 LVLKYEMQKNRWTVMNK-MITARSFFASGV-IGGMIYVAGGSSADL---------------------------------F 219 (402)
Q Consensus 175 ~~~~~d~~t~~W~~~~~-~~~~r~~~~~~~-~~~~iyv~GG~~~~~---------------------------------~ 219 (402)
++++||+.+++|+.+++ .|.++..|++++ .+++||++||..... .
T Consensus 107 ~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (376)
T PRK14131 107 DVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYF 186 (376)
T ss_pred cEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcC
Confidence 89999999999999985 456666777766 899999999975310 0
Q ss_pred CCCeeEEEcCCCCcEEEcCCCCC-CCcceeEEEECCEEEEEcccccCCccCCcEE--EEeCCCCCeeeccccccCCC---
Q 040145 220 ELDSAEVLDPVKGNWRTIASMGT-NMASYDAAVLDGKLLVTEGWLWPFFVSPRGQ--VYDPSTDNWESMAVGLREGW--- 293 (402)
Q Consensus 220 ~~~~~~~yd~~t~~W~~~~~~~~-~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~--~yd~~~~~W~~~~~~~~~~~--- 293 (402)
..+++++||+.+++|+.++++|. ++..++++.++++||++||..........++ .||+++++|+.+++ ++.++
T Consensus 187 ~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~p~~~~~~ 265 (376)
T PRK14131 187 FNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPD-LPPAPGGS 265 (376)
T ss_pred cCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCC-CCCCCcCC
Confidence 14689999999999999999996 6778888888999999999754433333443 56778999999886 43332
Q ss_pred -----cee-EEEECCEEEEEeccCC---------------------cEEEEEeCCCCceeecCCCCCCccccCCeEEEEe
Q 040145 294 -----TGS-SVVVYEHLFVVSELER---------------------MKLKVYDPSTDSWETIEGPPLPEQICKPFAVNAC 346 (402)
Q Consensus 294 -----~~~-~~~~~~~l~~~gg~~~---------------------~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~ 346 (402)
.++ +++++++||++||.+. ..+++||+++++|+.++.+|.| |..++++..
T Consensus 266 ~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~---r~~~~av~~ 342 (376)
T PRK14131 266 SQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQG---LAYGVSVSW 342 (376)
T ss_pred cCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCC---ccceEEEEe
Confidence 222 3578999999999641 2467899999999999854444 566788889
Q ss_pred CCEEEEEecCc--eeeeEEEEecccccc
Q 040145 347 DCRVYVVGRNL--HVAVGHITRLSTSEK 372 (402)
Q Consensus 347 ~~~i~v~GG~~--~~~~~~v~~~~~~~~ 372 (402)
+|+|||+||.. .....+|+.|.+..+
T Consensus 343 ~~~iyv~GG~~~~~~~~~~v~~~~~~~~ 370 (376)
T PRK14131 343 NNGVLLIGGETAGGKAVSDVTLLSWDGK 370 (376)
T ss_pred CCEEEEEcCCCCCCcEeeeEEEEEEcCC
Confidence 99999999965 346789999977544
No 14
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=6.9e-33 Score=254.33 Aligned_cols=245 Identities=16% Similarity=0.182 Sum_probs=186.7
Q ss_pred CceEEEEccCCEEEEEeCccCCC--------CCCCceEEEEE-CCC-CceeecCCCcccccceEEEEECCEEEEEcCCCC
Q 040145 147 GFRCVSIPREGTLFVCGGMVSDV--------DCPLDLVLKYE-MQK-NRWTVMNKMITARSFFASGVIGGMIYVAGGSSA 216 (402)
Q Consensus 147 ~~~~~~~~~~~~i~v~GG~~~~~--------~~~~~~~~~~d-~~t-~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~ 216 (402)
.+.++++ ++.||++||.+... ....+++++|+ +.. .+|..+++||.+|..+++++++++||++||.++
T Consensus 6 g~~~~~~--~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~ 83 (323)
T TIGR03548 6 GCYAGII--GDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNS 83 (323)
T ss_pred eEeeeEE--CCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCC
Confidence 3455555 99999999986432 12346788886 332 379999999999998888999999999999876
Q ss_pred CCCCCCeeEEEcCCCCcE----EEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCC
Q 040145 217 DLFELDSAEVLDPVKGNW----RTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREG 292 (402)
Q Consensus 217 ~~~~~~~~~~yd~~t~~W----~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~ 292 (402)
... .+++++||+.+++| +.++++|.+|..+++++++++||++||.... ...+.+++||+.+++|+++++.+...
T Consensus 84 ~~~-~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~p~~~ 161 (323)
T TIGR03548 84 SER-FSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNG-KPSNKSYLFNLETQEWFELPDFPGEP 161 (323)
T ss_pred CCC-ceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCC-ccCceEEEEcCCCCCeeECCCCCCCC
Confidence 554 78999999999987 7889999999999999999999999997533 23578999999999999998633234
Q ss_pred CceeE-EEECCEEEEEeccCC---cEEEEEeCCCCceeecCCCC---CCccccCCeEEEEeCCEEEEEecCceee-----
Q 040145 293 WTGSS-VVVYEHLFVVSELER---MKLKVYDPSTDSWETIEGPP---LPEQICKPFAVNACDCRVYVVGRNLHVA----- 360 (402)
Q Consensus 293 ~~~~~-~~~~~~l~~~gg~~~---~~~~~yd~~~~~W~~~~~~~---~p~~~~~~~~~~~~~~~i~v~GG~~~~~----- 360 (402)
+..++ ++++++||++||.+. .++++||+++++|+.++.++ .|......++++..+++|||+||.+...
T Consensus 162 r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~ 241 (323)
T TIGR03548 162 RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAV 241 (323)
T ss_pred CCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHH
Confidence 55544 689999999999752 46899999999999998542 3333233444556689999999976321
Q ss_pred ----------------------------eEEEEecccccccCceeeeEEEEeC----CCCCCCccccceeEEe
Q 040145 361 ----------------------------VGHITRLSTSEKKWSFSVQWQVVDA----PDNFSDLTPSSSQVLF 401 (402)
Q Consensus 361 ----------------------------~~~v~~~~~~~~~~~~~~~W~~~~~----~~~~~~~~~~~~~~~~ 401 (402)
.+++++||+..+ .|+.+++ ++....+++.++++++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~------~W~~~~~~p~~~r~~~~~~~~~~~iyv 308 (323)
T TIGR03548 242 IDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTG------KWKSIGNSPFFARCGAALLLTGNNIFS 308 (323)
T ss_pred hhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCC------eeeEcccccccccCchheEEECCEEEE
Confidence 257999999888 7777663 3334445666666654
No 15
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=5.8e-33 Score=272.23 Aligned_cols=244 Identities=17% Similarity=0.252 Sum_probs=195.8
Q ss_pred hccHhHHHhhcCchHhHHHHhhcCCCCCeEEEEEEeCCC--CceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEcc
Q 040145 78 AVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFAFHKCT--GKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPR 155 (402)
Q Consensus 78 ~v~k~W~~l~~s~~~~~~~r~~~~~~~~~l~~~gg~~~~--~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~ 155 (402)
...++|..+...| . .........++.+|++||.... ...+++.||+.+++|..+++++.++ ..++++++
T Consensus 271 ~~~~~~~~~~~~~-~--~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R----~~~~~~~~-- 341 (534)
T PHA03098 271 SPLSEINTIIDIH-Y--VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPR----KNPGVTVF-- 341 (534)
T ss_pred hhhhhcccccCcc-c--cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCccc----ccceEEEE--
Confidence 3355666665433 1 1112344568899999986432 2347899999999999999988554 56677766
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEE
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWR 235 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 235 (402)
+++||++||.... ...+++++|||.+++|+.++++|.+|..++++.++++||++||........+.+++||+.+++|+
T Consensus 342 ~~~lyv~GG~~~~--~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 342 NNRIYVIGGIYNS--ISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEEeCCCCC--EecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 9999999998632 45788999999999999999999999999999999999999997554444789999999999999
Q ss_pred EcCCCCCCCcceeEEEECCEEEEEcccccCC--ccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccC-
Q 040145 236 TIASMGTNMASYDAAVLDGKLLVTEGWLWPF--FVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELE- 311 (402)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~--~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~- 311 (402)
.++++|.+|..+++++.+++||++||..... ...+.+++||+.+++|+.+++ ++.++.+++ ++++++||++||..
T Consensus 420 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~-~~~~r~~~~~~~~~~~iyv~GG~~~ 498 (534)
T PHA03098 420 KGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS-LNFPRINASLCIFNNKIYVVGGDKY 498 (534)
T ss_pred ecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC-CCcccccceEEEECCEEEEEcCCcC
Confidence 9999999999999999999999999975432 123569999999999999986 444444444 77899999999976
Q ss_pred ---CcEEEEEeCCCCceeecCCCCCCc
Q 040145 312 ---RMKLKVYDPSTDSWETIEGPPLPE 335 (402)
Q Consensus 312 ---~~~~~~yd~~~~~W~~~~~~~~p~ 335 (402)
.+.+++||+++++|+.++ .+|+
T Consensus 499 ~~~~~~v~~yd~~~~~W~~~~--~~p~ 523 (534)
T PHA03098 499 EYYINEIEVYDDKTNTWTLFC--KFPK 523 (534)
T ss_pred CcccceeEEEeCCCCEEEecC--CCcc
Confidence 468999999999999998 4553
No 16
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=1.2e-32 Score=264.35 Aligned_cols=203 Identities=19% Similarity=0.265 Sum_probs=174.4
Q ss_pred CCCeEEEEEEeCC-CCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEEC
Q 040145 103 KDPWLFVFAFHKC-TGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEM 181 (402)
Q Consensus 103 ~~~~l~~~gg~~~-~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~ 181 (402)
.++.+|++||... .....++.|||.+++|..+++|+.++ ..++.+++ ++.||++||.+. .+++++|||
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r----~~~~~v~~--~~~iYviGG~~~-----~~sve~ydp 338 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPR----LYASGVPA--NNKLYVVGGLPN-----PTSVERWFH 338 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchh----hcceEEEE--CCEEEEECCcCC-----CCceEEEEC
Confidence 5788999998643 34456889999999999999998655 55666666 999999999742 257999999
Q ss_pred CCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcc
Q 040145 182 QKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEG 261 (402)
Q Consensus 182 ~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG 261 (402)
.+++|..+++||.+|..+++++++++||++||.++. .+.+++|||.+++|+.+++|+.+|..+++++++|+||++||
T Consensus 339 ~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG 415 (480)
T PHA02790 339 GDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR 415 (480)
T ss_pred CCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC
Confidence 999999999999999999999999999999998543 36799999999999999999999999999999999999998
Q ss_pred cccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccC----CcEEEEEeCCCCceeecC
Q 040145 262 WLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELE----RMKLKVYDPSTDSWETIE 329 (402)
Q Consensus 262 ~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~----~~~~~~yd~~~~~W~~~~ 329 (402)
. +++||+++++|+.+++ ++.++.+++ ++++|+||++||.+ ...+++||+.+++|+...
T Consensus 416 ~---------~e~ydp~~~~W~~~~~-m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 416 N---------AEFYCESSNTWTLIDD-PIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred c---------eEEecCCCCcEeEcCC-CCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEecC
Confidence 3 6889999999999987 566555555 78999999999975 357999999999998754
No 17
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=2.9e-32 Score=252.90 Aligned_cols=249 Identities=18% Similarity=0.250 Sum_probs=178.4
Q ss_pred CCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEEC--CCCceeecCCCc-ccccceEEEEECCEEEE
Q 040145 134 IPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEM--QKNRWTVMNKMI-TARSFFASGVIGGMIYV 210 (402)
Q Consensus 134 l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~--~t~~W~~~~~~~-~~r~~~~~~~~~~~iyv 210 (402)
+++||.++ ....++++ +++|||+||.. .+++++||+ .+++|+.+++|| .+|..+++++++++||+
T Consensus 1 ~~~lp~~~----~~~~~~~~--~~~vyv~GG~~------~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv 68 (346)
T TIGR03547 1 LPDLPVGF----KNGTGAII--GDKVYVGLGSA------GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYV 68 (346)
T ss_pred CCCCCccc----cCceEEEE--CCEEEEEcccc------CCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEE
Confidence 35566443 33444455 99999999973 257899996 578999999999 58999999999999999
Q ss_pred EcCCCCCC-----CCCCeeEEEcCCCCcEEEcC-CCCCCCcceeEE-EECCEEEEEcccccCC-----------------
Q 040145 211 AGGSSADL-----FELDSAEVLDPVKGNWRTIA-SMGTNMASYDAA-VLDGKLLVTEGWLWPF----------------- 266 (402)
Q Consensus 211 ~GG~~~~~-----~~~~~~~~yd~~t~~W~~~~-~~~~~~~~~~~~-~~~g~ly~~gG~~~~~----------------- 266 (402)
+||..... ..++++++||+.+++|+.++ .+|..+..++++ +++++||++||.....
T Consensus 69 ~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 148 (346)
T TIGR03547 69 FGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEP 148 (346)
T ss_pred EeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchh
Confidence 99985322 13678999999999999997 456667777666 6899999999975310
Q ss_pred ----------------ccCCcEEEEeCCCCCeeecccccc-CCCceeE-EEECCEEEEEeccC-----CcEEEEEe--CC
Q 040145 267 ----------------FVSPRGQVYDPSTDNWESMAVGLR-EGWTGSS-VVVYEHLFVVSELE-----RMKLKVYD--PS 321 (402)
Q Consensus 267 ----------------~~~~~~~~yd~~~~~W~~~~~~~~-~~~~~~~-~~~~~~l~~~gg~~-----~~~~~~yd--~~ 321 (402)
...+.+++||+.+++|+.+++ ++ .++.+++ ++++++||++||.. ...++.|| ++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~-~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~ 227 (346)
T TIGR03547 149 KDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGE-NPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGG 227 (346)
T ss_pred hhhhHHHHhCCChhHcCccceEEEEECCCCceeECcc-CCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCC
Confidence 013689999999999999986 44 3455554 68899999999964 13455554 57
Q ss_pred CCceeecCCCCCCcc----ccCCeEEEEeCCEEEEEecCcee------------------eeEEEEecccccccCceeee
Q 040145 322 TDSWETIEGPPLPEQ----ICKPFAVNACDCRVYVVGRNLHV------------------AVGHITRLSTSEKKWSFSVQ 379 (402)
Q Consensus 322 ~~~W~~~~~~~~p~~----~~~~~~~~~~~~~i~v~GG~~~~------------------~~~~v~~~~~~~~~~~~~~~ 379 (402)
+++|++++.++.|+. .+..+.+++.+|+|||+||.... ....+++||+..+ +
T Consensus 228 ~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~------~ 301 (346)
T TIGR03547 228 KLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNG------K 301 (346)
T ss_pred CceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCC------c
Confidence 789999996554421 11244567899999999996421 1236788888776 6
Q ss_pred EEEEeC---CCCCCCccccceeEEe
Q 040145 380 WQVVDA---PDNFSDLTPSSSQVLF 401 (402)
Q Consensus 380 W~~~~~---~~~~~~~~~~~~~~~~ 401 (402)
|+.+.+ |+....+++.+.++++
T Consensus 302 W~~~~~lp~~~~~~~~~~~~~~iyv 326 (346)
T TIGR03547 302 WSKVGKLPQGLAYGVSVSWNNGVLL 326 (346)
T ss_pred ccccCCCCCCceeeEEEEcCCEEEE
Confidence 766554 3333333334555543
No 18
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=6.8e-32 Score=223.15 Aligned_cols=253 Identities=20% Similarity=0.273 Sum_probs=196.8
Q ss_pred CCCCeEEEEEEeCC------CCceeEEEeecCCCcEEeCCCC------CCC---CCCCCCCceEEEEccCCEEEEEeCcc
Q 040145 102 FKDPWLFVFAFHKC------TGKIQWQVLDLTHYCWHTIPAM------PCK---DKVCPHGFRCVSIPREGTLFVCGGMV 166 (402)
Q Consensus 102 ~~~~~l~~~gg~~~------~~~~~~~~~d~~~~~W~~l~~~------~~~---~~~~~~~~~~~~~~~~~~i~v~GG~~ 166 (402)
..+..||.|||... ....++.+++..+.+|.++++- +.+ .+..+.++..+. .++++|+.||.+
T Consensus 21 aVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~--y~d~~yvWGGRN 98 (392)
T KOG4693|consen 21 AVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVE--YQDKAYVWGGRN 98 (392)
T ss_pred eecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEE--EcceEEEEcCcc
Confidence 35889999998643 3455789999999999999872 111 112233444444 599999999996
Q ss_pred CCCCCCCceEEEEECCCCceeec---CCCcccccceEEEEECCEEEEEcCCCCC-CCCCCeeEEEcCCCCcEEEc---CC
Q 040145 167 SDVDCPLDLVLKYEMQKNRWTVM---NKMITARSFFASGVIGGMIYVAGGSSAD-LFELDSAEVLDPVKGNWRTI---AS 239 (402)
Q Consensus 167 ~~~~~~~~~~~~~d~~t~~W~~~---~~~~~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~yd~~t~~W~~~---~~ 239 (402)
.+ +...+.++.|||.|+.|.+. ..+|.+|.+|++++.++.+|++||..+. ...+++++++|..|.+|+.+ .+
T Consensus 99 D~-egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~ 177 (392)
T KOG4693|consen 99 DD-EGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGD 177 (392)
T ss_pred Cc-ccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCC
Confidence 43 35678999999999999874 3578899999999999999999998432 22378999999999999988 46
Q ss_pred CCCCCcceeEEEECCEEEEEcccccCC--------ccCCcEEEEeCCCCCeeeccc--cccCCCceeE-EEECCEEEEEe
Q 040145 240 MGTNMASYDAAVLDGKLLVTEGWLWPF--------FVSPRGQVYDPSTDNWESMAV--GLREGWTGSS-VVVYEHLFVVS 308 (402)
Q Consensus 240 ~~~~~~~~~~~~~~g~ly~~gG~~~~~--------~~~~~~~~yd~~~~~W~~~~~--~~~~~~~~~~-~~~~~~l~~~g 308 (402)
.|.-|..|+++++++.+|+|||..+.. .+-+.+..+|++|+.|...++ ..|.++..++ .+.|++||+||
T Consensus 178 PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FG 257 (392)
T KOG4693|consen 178 PPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFG 257 (392)
T ss_pred CchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEec
Confidence 677788999999999999999986432 233567899999999998764 3355555444 78999999999
Q ss_pred ccC------CcEEEEEeCCCCceeecCCCC-CCccccCCeEEEEeCCEEEEEecCce
Q 040145 309 ELE------RMKLKVYDPSTDSWETIEGPP-LPEQICKPFAVNACDCRVYVVGRNLH 358 (402)
Q Consensus 309 g~~------~~~~~~yd~~~~~W~~~~~~~-~p~~~~~~~~~~~~~~~i~v~GG~~~ 358 (402)
|++ -++++.|||++..|+.|..-. -|.. |...++++.++|+|++||...
T Consensus 258 GYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~a-RRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 258 GYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSA-RRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred ccchhhhhhhcceeecccccchheeeeccCCCCCc-ccceeEEEECCEEEEecCCCC
Confidence 987 379999999999999986422 3333 555677888999999999653
No 19
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=1.1e-31 Score=222.02 Aligned_cols=228 Identities=16% Similarity=0.194 Sum_probs=185.7
Q ss_pred CCceEEEEccCCEEEEEeCccCCC---CCCCceEEEEECCCCceeecCC-------------CcccccceEEEEECCEEE
Q 040145 146 HGFRCVSIPREGTLFVCGGMVSDV---DCPLDLVLKYEMQKNRWTVMNK-------------MITARSFFASGVIGGMIY 209 (402)
Q Consensus 146 ~~~~~~~~~~~~~i~v~GG~~~~~---~~~~~~~~~~d~~t~~W~~~~~-------------~~~~r~~~~~~~~~~~iy 209 (402)
..++++++ +..||-|||+.... ...--++.++|..+-+|+++|+ .|..|++|+++.+++++|
T Consensus 15 VNHAavaV--G~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~y 92 (392)
T KOG4693|consen 15 VNHAAVAV--GSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAY 92 (392)
T ss_pred ccceeeee--cceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEE
Confidence 56777777 99999999985332 1123478899999999999876 245599999999999999
Q ss_pred EEcCCCCCCCCCCeeEEEcCCCCcEEEc---CCCCCCCcceeEEEECCEEEEEccccc-CCccCCcEEEEeCCCCCeeec
Q 040145 210 VAGGSSADLFELDSAEVLDPVKGNWRTI---ASMGTNMASYDAAVLDGKLLVTEGWLW-PFFVSPRGQVYDPSTDNWESM 285 (402)
Q Consensus 210 v~GG~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~~~~~~~~~~~g~ly~~gG~~~-~~~~~~~~~~yd~~~~~W~~~ 285 (402)
+.||.++.+..-+..++||++|+.|.+. .-+|.+|.+|++++.++.+|+|||+.+ ....++++..+|++|.+|+++
T Consensus 93 vWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~ 172 (392)
T KOG4693|consen 93 VWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREM 172 (392)
T ss_pred EEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeeh
Confidence 9999977554478899999999999876 468999999999999999999999864 345677899999999999998
Q ss_pred cc-cccC--CCceeEEEECCEEEEEeccC-------------CcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCE
Q 040145 286 AV-GLRE--GWTGSSVVVYEHLFVVSELE-------------RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCR 349 (402)
Q Consensus 286 ~~-~~~~--~~~~~~~~~~~~l~~~gg~~-------------~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~ 349 (402)
.. .-|. +-++.+.++++.+|+|||.+ .+.|..+|.+|..|......++.+..|..|++.+++++
T Consensus 173 ~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~ 252 (392)
T KOG4693|consen 173 HTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGK 252 (392)
T ss_pred hccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcce
Confidence 64 2222 22344478899999999975 35799999999999998765665666888999999999
Q ss_pred EEEEecCc---eeeeEEEEecccccccCc
Q 040145 350 VYVVGRNL---HVAVGHITRLSTSEKKWS 375 (402)
Q Consensus 350 i~v~GG~~---~~~~~~v~~~~~~~~~~~ 375 (402)
||++||++ +.-.+|.|.|||.+..|+
T Consensus 253 ~Y~FGGYng~ln~HfndLy~FdP~t~~W~ 281 (392)
T KOG4693|consen 253 MYMFGGYNGTLNVHFNDLYCFDPKTSMWS 281 (392)
T ss_pred EEEecccchhhhhhhcceeecccccchhe
Confidence 99999987 445699999999888443
No 20
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.98 E-value=1.4e-30 Score=243.31 Aligned_cols=254 Identities=18% Similarity=0.232 Sum_probs=181.5
Q ss_pred cEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECC--CCceeecCCCc-ccccceEEEEECC
Q 040145 130 CWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQ--KNRWTVMNKMI-TARSFFASGVIGG 206 (402)
Q Consensus 130 ~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~--t~~W~~~~~~~-~~r~~~~~~~~~~ 206 (402)
.++.+++||.++ ...+++++ +++||++||.. .+.+++||+. +++|..++++| .+|..++++++++
T Consensus 18 ~~~~l~~lP~~~----~~~~~~~~--~~~iyv~gG~~------~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~ 85 (376)
T PRK14131 18 NAEQLPDLPVPF----KNGTGAID--NNTVYVGLGSA------GTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDG 85 (376)
T ss_pred ecccCCCCCcCc----cCCeEEEE--CCEEEEEeCCC------CCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECC
Confidence 356778888544 33445555 99999999973 2358899986 47899999998 4899999999999
Q ss_pred EEEEEcCCCC-C----CCCCCeeEEEcCCCCcEEEcCC-CCCCCcceeEEE-ECCEEEEEcccccCC-------------
Q 040145 207 MIYVAGGSSA-D----LFELDSAEVLDPVKGNWRTIAS-MGTNMASYDAAV-LDGKLLVTEGWLWPF------------- 266 (402)
Q Consensus 207 ~iyv~GG~~~-~----~~~~~~~~~yd~~t~~W~~~~~-~~~~~~~~~~~~-~~g~ly~~gG~~~~~------------- 266 (402)
+||++||... . ....+++++||+.+++|+.++. +|.++..+++++ .+++||++||.....
T Consensus 86 ~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~ 165 (376)
T PRK14131 86 KLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGK 165 (376)
T ss_pred EEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhccc
Confidence 9999999854 1 1225789999999999999985 466667777666 799999999975210
Q ss_pred --------------------ccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccC-----CcEE--EEE
Q 040145 267 --------------------FVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELE-----RMKL--KVY 318 (402)
Q Consensus 267 --------------------~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~-----~~~~--~~y 318 (402)
...+.+++||+.+++|+.+++.+..++.+++ +.++++||++||.. ...+ +.|
T Consensus 166 ~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~ 245 (376)
T PRK14131 166 DKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKF 245 (376)
T ss_pred chhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEe
Confidence 0136799999999999999863323555554 67899999999953 2233 356
Q ss_pred eCCCCceeecCCCCCCccc-----cCCeEEEEeCCEEEEEecCceee------------------eEEEEecccccccCc
Q 040145 319 DPSTDSWETIEGPPLPEQI-----CKPFAVNACDCRVYVVGRNLHVA------------------VGHITRLSTSEKKWS 375 (402)
Q Consensus 319 d~~~~~W~~~~~~~~p~~~-----~~~~~~~~~~~~i~v~GG~~~~~------------------~~~v~~~~~~~~~~~ 375 (402)
|+++++|+++..++.++.. +.++.+++.+++|||+||..... ...+++||+..+
T Consensus 246 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~--- 322 (376)
T PRK14131 246 TGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNG--- 322 (376)
T ss_pred cCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCC---
Confidence 7889999999955443210 11223567899999999965211 135778998777
Q ss_pred eeeeEEE---EeCCCCCCCccccceeEEe
Q 040145 376 FSVQWQV---VDAPDNFSDLTPSSSQVLF 401 (402)
Q Consensus 376 ~~~~W~~---~~~~~~~~~~~~~~~~~~~ 401 (402)
+|++ ++.|+..+.++..+.++++
T Consensus 323 ---~W~~~~~lp~~r~~~~av~~~~~iyv 348 (376)
T PRK14131 323 ---KWQKVGELPQGLAYGVSVSWNNGVLL 348 (376)
T ss_pred ---cccccCcCCCCccceEEEEeCCEEEE
Confidence 5655 4445555555556666554
No 21
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.95 E-value=1.3e-25 Score=214.48 Aligned_cols=236 Identities=19% Similarity=0.230 Sum_probs=193.7
Q ss_pred CCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecC---CCcccccceEEEEECCEEEEEcCCCCCCCC
Q 040145 144 CPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMN---KMITARSFFASGVIGGMIYVAGGSSADLFE 220 (402)
Q Consensus 144 ~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~ 220 (402)
.+..|.++.+ ++++||+||..........+++++|..+..|.... ..|.+|..|.++.++++||++||.+.....
T Consensus 60 ~R~~hs~~~~--~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~ 137 (482)
T KOG0379|consen 60 PRAGHSAVLI--GNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRN 137 (482)
T ss_pred hhhccceeEE--CCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCC
Confidence 3466777776 99999999986543222226999999999998854 467899999999999999999999764444
Q ss_pred CCeeEEEcCCCCcEEEc---CCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccc--cccCCCce
Q 040145 221 LDSAEVLDPVKGNWRTI---ASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV--GLREGWTG 295 (402)
Q Consensus 221 ~~~~~~yd~~t~~W~~~---~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~--~~~~~~~~ 295 (402)
.++++.||+.|++|+.+ ..+|.+|.+|++++++.+||++||.+......+++++||+++.+|.++.. ..|.++.+
T Consensus 138 ~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~g 217 (482)
T KOG0379|consen 138 LNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYG 217 (482)
T ss_pred hhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCC
Confidence 78999999999999987 45789999999999999999999998776678899999999999999864 45566777
Q ss_pred eE-EEECCEEEEEeccC-----CcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCcee---eeEEEEe
Q 040145 296 SS-VVVYEHLFVVSELE-----RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHV---AVGHITR 366 (402)
Q Consensus 296 ~~-~~~~~~l~~~gg~~-----~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~---~~~~v~~ 366 (402)
++ ++++++++++||.. .++++.+|..+.+|..+....-.+..|..|..+..++.++|+||.... ...++|.
T Consensus 218 H~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~ 297 (482)
T KOG0379|consen 218 HAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYG 297 (482)
T ss_pred ceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCccccccccccccc
Confidence 66 78899999998876 469999999999999776433333448889888999999999998763 6889999
Q ss_pred cccccccCceeeeEEEEeCCC
Q 040145 367 LSTSEKKWSFSVQWQVVDAPD 387 (402)
Q Consensus 367 ~~~~~~~~~~~~~W~~~~~~~ 387 (402)
|+..++ .|.++....
T Consensus 298 l~~~~~------~w~~~~~~~ 312 (482)
T KOG0379|consen 298 LDLETL------VWSKVESVG 312 (482)
T ss_pred cccccc------ceeeeeccc
Confidence 988766 777766654
No 22
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.93 E-value=3.6e-24 Score=204.55 Aligned_cols=272 Identities=19% Similarity=0.187 Sum_probs=205.3
Q ss_pred HhHHHHhhcC--CCCCeEEEEEEeCCC-Cce--eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCcc
Q 040145 92 RFFTRRKELG--FKDPWLFVFAFHKCT-GKI--QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMV 166 (402)
Q Consensus 92 ~~~~~r~~~~--~~~~~l~~~gg~~~~-~~~--~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~ 166 (402)
..+..|..++ ..++.+|++||.... ... +++++|..+..|.........+ ..+.++..+++ +.+||++||.+
T Consensus 56 ~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p-~~r~g~~~~~~--~~~l~lfGG~~ 132 (482)
T KOG0379|consen 56 VGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEP-SPRYGHSLSAV--GDKLYLFGGTD 132 (482)
T ss_pred CCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCC-CcccceeEEEE--CCeEEEEcccc
Confidence 3445555543 348999999886432 222 5999999999998766544322 34456666676 89999999997
Q ss_pred CCCCCCCceEEEEECCCCceeecC---CCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEc---CCC
Q 040145 167 SDVDCPLDLVLKYEMQKNRWTVMN---KMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTI---ASM 240 (402)
Q Consensus 167 ~~~~~~~~~~~~~d~~t~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~---~~~ 240 (402)
. .....++++.||+.|++|+.+. ..|.+|.+|+++++++++||+||.+......+++++||+++.+|.++ ...
T Consensus 133 ~-~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~ 211 (482)
T KOG0379|consen 133 K-KYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEA 211 (482)
T ss_pred C-CCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCC
Confidence 5 2345789999999999999875 46788999999999999999999977774589999999999999987 467
Q ss_pred CCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccc--cccCCCceeE-EEECCEEEEEeccCC-----
Q 040145 241 GTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV--GLREGWTGSS-VVVYEHLFVVSELER----- 312 (402)
Q Consensus 241 ~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~--~~~~~~~~~~-~~~~~~l~~~gg~~~----- 312 (402)
|.+|.+|+.++.+++++++||.......+++++.+|+.+.+|..+.. ..|.++..+. ++.+.+++++||...
T Consensus 212 P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~ 291 (482)
T KOG0379|consen 212 PSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEP 291 (482)
T ss_pred CCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCccccccc
Confidence 88999999999999999999988666778999999999999997663 4666777666 688999999998653
Q ss_pred -cEEEEEeCCCCceeecCCCC-CCccccCCeEEEEeC----CEEEEEecCc--eeeeEEEEec
Q 040145 313 -MKLKVYDPSTDSWETIEGPP-LPEQICKPFAVNACD----CRVYVVGRNL--HVAVGHITRL 367 (402)
Q Consensus 313 -~~~~~yd~~~~~W~~~~~~~-~p~~~~~~~~~~~~~----~~i~v~GG~~--~~~~~~v~~~ 367 (402)
.+++.||..++.|..+.... ..+..+..++.+... ....++||.. .....++..+
T Consensus 292 l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (482)
T KOG0379|consen 292 LGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQILGERLADVFSL 354 (482)
T ss_pred ccccccccccccceeeeeccccccccccccccceeeccCCccceeeecCccccccchhhcccc
Confidence 46899999999999998655 333334444444322 2344555523 3333444444
No 23
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.92 E-value=2.7e-24 Score=188.46 Aligned_cols=239 Identities=13% Similarity=0.211 Sum_probs=188.7
Q ss_pred CCCCCCCCCceEEEEccCCEEEEEeCccCCC--CCCCceEEEEECCCCceeec--CCCcccccceEEEEEC-CEEEEEcC
Q 040145 139 CKDKVCPHGFRCVSIPREGTLFVCGGMVSDV--DCPLDLVLKYEMQKNRWTVM--NKMITARSFFASGVIG-GMIYVAGG 213 (402)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~--~~~~~~~~~~d~~t~~W~~~--~~~~~~r~~~~~~~~~-~~iyv~GG 213 (402)
++++.++..+...+.+....|+++||..-++ ....+++|.||..+++|+.+ |..|.||+.|.++++. +.+|++||
T Consensus 61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGG 140 (521)
T KOG1230|consen 61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGG 140 (521)
T ss_pred CCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEecc
Confidence 3344455667777766677999999986444 22468999999999999986 5678899999888875 89999999
Q ss_pred CCC----CC-CCCCeeEEEcCCCCcEEEc--CCCCCCCcceeEEEECCEEEEEccccc---CCccCCcEEEEeCCCCCee
Q 040145 214 SSA----DL-FELDSAEVLDPVKGNWRTI--ASMGTNMASYDAAVLDGKLLVTEGWLW---PFFVSPRGQVYDPSTDNWE 283 (402)
Q Consensus 214 ~~~----~~-~~~~~~~~yd~~t~~W~~~--~~~~~~~~~~~~~~~~g~ly~~gG~~~---~~~~~~~~~~yd~~~~~W~ 283 (402)
.-. .. .-..++|+||..|++|+.+ +.-|.+|.+|..++...+|++|||+.+ ...+.|++++||+.+-+|+
T Consensus 141 EfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~ 220 (521)
T KOG1230|consen 141 EFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWS 220 (521)
T ss_pred ccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeee
Confidence 721 11 1257899999999999988 567899999999999999999999854 3456789999999999999
Q ss_pred eccccc--cCCCceeE-EEE-CCEEEEEeccC-------------CcEEEEEeCCC-----CceeecCCCCCCccccCCe
Q 040145 284 SMAVGL--REGWTGSS-VVV-YEHLFVVSELE-------------RMKLKVYDPST-----DSWETIEGPPLPEQICKPF 341 (402)
Q Consensus 284 ~~~~~~--~~~~~~~~-~~~-~~~l~~~gg~~-------------~~~~~~yd~~~-----~~W~~~~~~~~p~~~~~~~ 341 (402)
++.+.- |.+|.+++ .+. +|.||+.||++ .+++|.+++.+ -.|..+....+++..|.++
T Consensus 221 Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgf 300 (521)
T KOG1230|consen 221 KLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGF 300 (521)
T ss_pred eccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCce
Confidence 998633 66777766 344 89999999986 35899999988 5799998777777779999
Q ss_pred EEEEe-CCEEEEEecCce----------eeeEEEEecccccccCcee
Q 040145 342 AVNAC-DCRVYVVGRNLH----------VAVGHITRLSTSEKKWSFS 377 (402)
Q Consensus 342 ~~~~~-~~~i~v~GG~~~----------~~~~~v~~~~~~~~~~~~~ 377 (402)
++++. +++-|.|||-.. .-.+|+|-||..-+.|.+.
T Consensus 301 sv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 301 SVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred eEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 88865 559999999542 2357888888877766543
No 24
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=7.6e-24 Score=190.15 Aligned_cols=277 Identities=17% Similarity=0.203 Sum_probs=205.5
Q ss_pred hHHHhhcCchHhHHHHhhcC--CCCCeEEEEEEeCCCCceeEEEeecCCCcEEeCC---CCCCCCCCCCCCceEEEEccC
Q 040145 82 RWHLLLGNKERFFTRRKELG--FKDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIP---AMPCKDKVCPHGFRCVSIPRE 156 (402)
Q Consensus 82 ~W~~l~~s~~~~~~~r~~~~--~~~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~---~~~~~~~~~~~~~~~~~~~~~ 156 (402)
+|+.+..+.+..++.|+.+. .....+++|||.+..-...+++||..++.|.--. ++|.+- ..|+.++. +
T Consensus 18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgc----AA~Gfvcd--G 91 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGC----AAFGFVCD--G 91 (830)
T ss_pred ceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCch----hhcceEec--C
Confidence 67777765545566676654 3577888888887777778999999999997532 223111 44666665 8
Q ss_pred CEEEEEeCccCCCCCCCceEEEEECCCCceeecC-------CCcccccceEEEEECCEEEEEcCCCCC--------CCCC
Q 040145 157 GTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMN-------KMITARSFFASGVIGGMIYVAGGSSAD--------LFEL 221 (402)
Q Consensus 157 ~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~-------~~~~~r~~~~~~~~~~~iyv~GG~~~~--------~~~~ 221 (402)
.+||+|||+.+-+ .+++++|.+....=.|+++. ++|.||-+|+...++++-|+|||..+. ..++
T Consensus 92 trilvFGGMvEYG-kYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYL 170 (830)
T KOG4152|consen 92 TRILVFGGMVEYG-KYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYL 170 (830)
T ss_pred ceEEEEccEeeec-cccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhh
Confidence 8999999997554 67888877666666788763 356789999999999999999998322 1236
Q ss_pred CeeEEEcCCCCc----EEEc---CCCCCCCcceeEEEE------CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccc-
Q 040145 222 DSAEVLDPVKGN----WRTI---ASMGTNMASYDAAVL------DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV- 287 (402)
Q Consensus 222 ~~~~~yd~~t~~----W~~~---~~~~~~~~~~~~~~~------~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~- 287 (402)
+++++.+..-+. |... ..+|.+|..|.++++ ..++|++||..+ .++.+++..|+++-.|.+...
T Consensus 171 nDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G--~RLgDLW~Ldl~Tl~W~kp~~~ 248 (830)
T KOG4152|consen 171 NDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG--CRLGDLWTLDLDTLTWNKPSLS 248 (830)
T ss_pred cceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc--ccccceeEEecceeeccccccc
Confidence 788888877543 8765 578999999999887 247999999865 456789999999999998753
Q ss_pred ---cccCCCceeEEEECCEEEEEeccC------------------CcEEEEEeCCCCceeecCCC-----CCCccccCCe
Q 040145 288 ---GLREGWTGSSVVVYEHLFVVSELE------------------RMKLKVYDPSTDSWETIEGP-----PLPEQICKPF 341 (402)
Q Consensus 288 ---~~~~~~~~~~~~~~~~l~~~gg~~------------------~~~~~~yd~~~~~W~~~~~~-----~~p~~~~~~~ 341 (402)
++|+. .+.+..++++||+|||.- .+.+-.+|++++.|+.+-.- ..|+. |.+|
T Consensus 249 G~~PlPRS-LHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~-RAGH 326 (830)
T KOG4152|consen 249 GVAPLPRS-LHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRA-RAGH 326 (830)
T ss_pred CCCCCCcc-cccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccc-cccc
Confidence 23333 333468999999999963 35788899999999977421 13433 8889
Q ss_pred EEEEeCCEEEEEecCc--------eeeeEEEEeccc
Q 040145 342 AVNACDCRVYVVGRNL--------HVAVGHITRLST 369 (402)
Q Consensus 342 ~~~~~~~~i~v~GG~~--------~~~~~~v~~~~~ 369 (402)
++++++.++||..|.+ ...+.|+|.+|.
T Consensus 327 CAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdT 362 (830)
T KOG4152|consen 327 CAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDT 362 (830)
T ss_pred eeEEeccEEEEEeccchhhHhhccccchhhhhhhcc
Confidence 9999999999999955 223567777775
No 25
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.90 E-value=1.7e-22 Score=177.16 Aligned_cols=222 Identities=13% Similarity=0.151 Sum_probs=171.7
Q ss_pred CCeEEEEEEeC-----CCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCC----CCCCc
Q 040145 104 DPWLFVFAFHK-----CTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDV----DCPLD 174 (402)
Q Consensus 104 ~~~l~~~gg~~-----~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~----~~~~~ 174 (402)
...|++|||.- ....+++|.||...++|+.+.....|+ .++++.++++. .+.+|++||..... .-...
T Consensus 78 keELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~--pRsshq~va~~-s~~l~~fGGEfaSPnq~qF~HYk 154 (521)
T KOG1230|consen 78 KEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPP--PRSSHQAVAVP-SNILWLFGGEFASPNQEQFHHYK 154 (521)
T ss_pred cceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcC--CCccceeEEec-cCeEEEeccccCCcchhhhhhhh
Confidence 55899998742 123446889999999999876544332 44777777773 57999999985332 12468
Q ss_pred eEEEEECCCCceeec--CCCcccccceEEEEECCEEEEEcCCCC---CCCCCCeeEEEcCCCCcEEEcCC---CCCCCcc
Q 040145 175 LVLKYEMQKNRWTVM--NKMITARSFFASGVIGGMIYVAGGSSA---DLFELDSAEVLDPVKGNWRTIAS---MGTNMAS 246 (402)
Q Consensus 175 ~~~~~d~~t~~W~~~--~~~~~~r~~~~~~~~~~~iyv~GG~~~---~~~~~~~~~~yd~~t~~W~~~~~---~~~~~~~ 246 (402)
++|.||..|++|+++ +.-|.+|.+|.+++...+|+++||+.. ...+.+++++||+.|-+|.++.+ -|.+|.+
T Consensus 155 D~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSG 234 (521)
T KOG1230|consen 155 DLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSG 234 (521)
T ss_pred heeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCc
Confidence 999999999999997 467899999999999999999999832 22347999999999999999843 4789999
Q ss_pred eeEEEE-CCEEEEEcccc--------cCCccCCcEEEEeCCC-----CCeeeccc--cccCCCceeE--EEECCEEEEEe
Q 040145 247 YDAAVL-DGKLLVTEGWL--------WPFFVSPRGQVYDPST-----DNWESMAV--GLREGWTGSS--VVVYEHLFVVS 308 (402)
Q Consensus 247 ~~~~~~-~g~ly~~gG~~--------~~~~~~~~~~~yd~~~-----~~W~~~~~--~~~~~~~~~~--~~~~~~l~~~g 308 (402)
++.++. +|.||+.||+. ..+...++++..++.+ -.|..+.+ ..|.+|.+.+ +.-+++-|.||
T Consensus 235 cq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FG 314 (521)
T KOG1230|consen 235 CQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFG 314 (521)
T ss_pred ceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEec
Confidence 988887 99999999984 2334456788899887 57888865 3456666665 34478999999
Q ss_pred ccC-------------CcEEEEEeCCCCceeec
Q 040145 309 ELE-------------RMKLKVYDPSTDSWETI 328 (402)
Q Consensus 309 g~~-------------~~~~~~yd~~~~~W~~~ 328 (402)
|.- .++++.||...+.|.+.
T Consensus 315 GV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 315 GVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred ceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 853 47899999999999865
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.90 E-value=2.2e-22 Score=180.84 Aligned_cols=224 Identities=15% Similarity=0.153 Sum_probs=170.8
Q ss_pred CcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceee---cCCCcccccceEEEEEC
Q 040145 129 YCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTV---MNKMITARSFFASGVIG 205 (402)
Q Consensus 129 ~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~---~~~~~~~r~~~~~~~~~ 205 (402)
-+|+.+.....+.+..+|+|.++++ ...|.+|||.++. ..+++.+||..|++|.. ..+.|.+...|+.+..+
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVai--kELiviFGGGNEG---iiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdG 91 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAI--KELIVIFGGGNEG---IIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDG 91 (830)
T ss_pred cceEEEecccCCCCCccccchheee--eeeEEEecCCccc---chhhhhhhccccceeecchhcCCCCCchhhcceEecC
Confidence 4577766554444456789999988 8999999997543 57899999999999976 35788888899999999
Q ss_pred CEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcC-------CCCCCCcceeEEEECCEEEEEcccccC--------CccCC
Q 040145 206 GMIYVAGGSSADLFELDSAEVLDPVKGNWRTIA-------SMGTNMASYDAAVLDGKLLVTEGWLWP--------FFVSP 270 (402)
Q Consensus 206 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~-------~~~~~~~~~~~~~~~g~ly~~gG~~~~--------~~~~~ 270 (402)
.+||+|||..+.+.+.++.+.+......|+++. .+|-+|-+|+...++++-|+|||..++ ..+++
T Consensus 92 trilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLn 171 (830)
T KOG4152|consen 92 TRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLN 171 (830)
T ss_pred ceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhc
Confidence 999999999877776777665555556677773 467789999999999999999997543 24567
Q ss_pred cEEEEeCCCC----Ceeeccc--cccCCCceeE-EEE------CCEEEEEeccC---CcEEEEEeCCCCceeecCCCCCC
Q 040145 271 RGQVYDPSTD----NWESMAV--GLREGWTGSS-VVV------YEHLFVVSELE---RMKLKVYDPSTDSWETIEGPPLP 334 (402)
Q Consensus 271 ~~~~yd~~~~----~W~~~~~--~~~~~~~~~~-~~~------~~~l~~~gg~~---~~~~~~yd~~~~~W~~~~~~~~p 334 (402)
++++.++.-+ .|+..-. ..|.+|..+. +.+ ..+||++||.. ..++|.+|+++.+|.+..--..+
T Consensus 172 DlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~ 251 (830)
T KOG4152|consen 172 DLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVA 251 (830)
T ss_pred ceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccccccCCC
Confidence 8888888744 4876432 3444454444 333 35799999987 47999999999999987543333
Q ss_pred ccccCCeEEEEeCCEEEEEecCc
Q 040145 335 EQICKPFAVNACDCRVYVVGRNL 357 (402)
Q Consensus 335 ~~~~~~~~~~~~~~~i~v~GG~~ 357 (402)
+..|.-|++..+++++||+||+-
T Consensus 252 PlPRSLHsa~~IGnKMyvfGGWV 274 (830)
T KOG4152|consen 252 PLPRSLHSATTIGNKMYVFGGWV 274 (830)
T ss_pred CCCcccccceeecceeEEeccee
Confidence 33388899999999999999965
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.79 E-value=3.7e-17 Score=142.05 Aligned_cols=246 Identities=18% Similarity=0.243 Sum_probs=173.9
Q ss_pred CCCeEEEEEEeCCCCceeEEEeecCC--CcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCC---CCCCceEE
Q 040145 103 KDPWLFVFAFHKCTGKIQWQVLDLTH--YCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDV---DCPLDLVL 177 (402)
Q Consensus 103 ~~~~l~~~gg~~~~~~~~~~~~d~~~--~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~---~~~~~~~~ 177 (402)
.++.+|+.-|. ....++..|+.. ..|++++..|...+ ..-..++ .+++||++||..... ....+++|
T Consensus 45 ig~~~YVGLGs---~G~afy~ldL~~~~k~W~~~a~FpG~~r---nqa~~a~--~~~kLyvFgG~Gk~~~~~~~~~nd~Y 116 (381)
T COG3055 45 IGDTVYVGLGS---AGTAFYVLDLKKPGKGWTKIADFPGGAR---NQAVAAV--IGGKLYVFGGYGKSVSSSPQVFNDAY 116 (381)
T ss_pred ecceEEEEecc---CCccceehhhhcCCCCceEcccCCCccc---ccchhee--eCCeEEEeeccccCCCCCceEeeeeE
Confidence 46688888653 334488888875 46999999986652 2223333 499999999985333 23468999
Q ss_pred EEECCCCceeecCC-CcccccceEEEEECC-EEEEEcCCCCC---------------------------------CCCCC
Q 040145 178 KYEMQKNRWTVMNK-MITARSFFASGVIGG-MIYVAGGSSAD---------------------------------LFELD 222 (402)
Q Consensus 178 ~~d~~t~~W~~~~~-~~~~r~~~~~~~~~~-~iyv~GG~~~~---------------------------------~~~~~ 222 (402)
+|||.+++|.++.. .|..-..+..+.+++ +||++||.+.. .....
T Consensus 117 ~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ 196 (381)
T COG3055 117 RYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNK 196 (381)
T ss_pred EecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccc
Confidence 99999999999864 455567777888877 99999997421 01235
Q ss_pred eeEEEcCCCCcEEEcCCCCC-CCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCC--CCeeeccccccCCC---cee
Q 040145 223 SAEVLDPVKGNWRTIASMGT-NMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPST--DNWESMAVGLREGW---TGS 296 (402)
Q Consensus 223 ~~~~yd~~t~~W~~~~~~~~-~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~--~~W~~~~~~~~~~~---~~~ 296 (402)
++..|||.++.|+.+...|. ++++.+.+.-++++.++-|.--++.++..+..++... .+|..++..++... .+.
T Consensus 197 ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGv 276 (381)
T COG3055 197 EVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGV 276 (381)
T ss_pred cccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCcccc
Confidence 79999999999999987765 4455444445777988888777777777788888764 47999876332221 111
Q ss_pred E----EEECCEEEEEeccC-----------------------CcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCE
Q 040145 297 S----VVVYEHLFVVSELE-----------------------RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCR 349 (402)
Q Consensus 297 ~----~~~~~~l~~~gg~~-----------------------~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~ 349 (402)
+ -..++++.+.||.. ...|+.+| .+.|+.+.. +|.. ......+..+++
T Consensus 277 AGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~Ge--Lp~~-l~YG~s~~~nn~ 351 (381)
T COG3055 277 AGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGE--LPQG-LAYGVSLSYNNK 351 (381)
T ss_pred ceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecc--cCCC-ccceEEEecCCc
Confidence 1 24578888888764 24788888 789999995 5543 344466678999
Q ss_pred EEEEecCceeee
Q 040145 350 VYVVGRNLHVAV 361 (402)
Q Consensus 350 i~v~GG~~~~~~ 361 (402)
||+|||......
T Consensus 352 vl~IGGE~~~Gk 363 (381)
T COG3055 352 VLLIGGETSGGK 363 (381)
T ss_pred EEEEccccCCCe
Confidence 999999775443
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.52 E-value=3.3e-13 Score=117.71 Aligned_cols=188 Identities=22% Similarity=0.328 Sum_probs=140.3
Q ss_pred eecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCC--CcEEEcCCCCC-CCcceeEEEECCEEEEEcccc
Q 040145 187 TVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVK--GNWRTIASMGT-NMASYDAAVLDGKLLVTEGWL 263 (402)
Q Consensus 187 ~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t--~~W~~~~~~~~-~~~~~~~~~~~g~ly~~gG~~ 263 (402)
..+|++|.+...-+.+..++.+||--|..+ ...+..|.+. ..|++++..|. +|.....++++++||+|||..
T Consensus 28 ~~lPdlPvg~KnG~Ga~ig~~~YVGLGs~G-----~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~G 102 (381)
T COG3055 28 GQLPDLPVGFKNGAGALIGDTVYVGLGSAG-----TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYG 102 (381)
T ss_pred ccCCCCCccccccccceecceEEEEeccCC-----ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccc
Confidence 356888888777788888999999877533 2346667764 46999999886 567778889999999999975
Q ss_pred cC----CccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECC-EEEEEeccC--------------------------
Q 040145 264 WP----FFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYE-HLFVVSELE-------------------------- 311 (402)
Q Consensus 264 ~~----~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~-~l~~~gg~~-------------------------- 311 (402)
.. ....+++++||+.+++|+.+....|....++. +..++ ++|++||.+
T Consensus 103 k~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~ 182 (381)
T COG3055 103 KSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIA 182 (381)
T ss_pred cCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHH
Confidence 32 23456889999999999999876777766666 56666 999999976
Q ss_pred ------------CcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeee--EEEEecccccccCcee
Q 040145 312 ------------RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAV--GHITRLSTSEKKWSFS 377 (402)
Q Consensus 312 ------------~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~--~~v~~~~~~~~~~~~~ 377 (402)
...++.|||.+++|+.+.. .|-..+.+.+++.-+++|.+|-|..+... ..++.++-.. ..
T Consensus 183 ~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~--~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~----~~ 256 (381)
T COG3055 183 HYFDKKAEDYFFNKEVLSYDPSTNQWRNLGE--NPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGG----DN 256 (381)
T ss_pred HHhCCCHHHhcccccccccccccchhhhcCc--CcccCccCcceeecCCeEEEEcceecCCccccceeEEEecc----Cc
Confidence 2479999999999999884 44333666667777888999999775544 3444444322 34
Q ss_pred eeEEEEeC
Q 040145 378 VQWQVVDA 385 (402)
Q Consensus 378 ~~W~~~~~ 385 (402)
..|.++..
T Consensus 257 ~~w~~l~~ 264 (381)
T COG3055 257 LKWLKLSD 264 (381)
T ss_pred eeeeeccC
Confidence 58998744
No 29
>PF13964 Kelch_6: Kelch motif
Probab=99.26 E-value=1.9e-11 Score=78.62 Aligned_cols=50 Identities=30% Similarity=0.427 Sum_probs=45.3
Q ss_pred cccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCC
Q 040145 195 ARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNM 244 (402)
Q Consensus 195 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~ 244 (402)
+|..+++++++++||++||........+++++||++|++|+.+++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 58899999999999999999774444899999999999999999999886
No 30
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.15 E-value=1.1e-08 Score=89.26 Aligned_cols=194 Identities=12% Similarity=0.092 Sum_probs=117.0
Q ss_pred ceEEEEECCCCceeecCCCccccc---c--eEEEEE----CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCC
Q 040145 174 DLVLKYEMQKNRWTVMNKMITARS---F--FASGVI----GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNM 244 (402)
Q Consensus 174 ~~~~~~d~~t~~W~~~~~~~~~r~---~--~~~~~~----~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~ 244 (402)
..++++||.|++|+.+|+.+.++. . .+...- .-|+..+....... ....+++|+..+++|+.+...+...
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~-~~~~~~Vys~~~~~Wr~~~~~~~~~ 92 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR-NQSEHQVYTLGSNSWRTIECSPPHH 92 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC-CCccEEEEEeCCCCccccccCCCCc
Confidence 379999999999999986544211 1 111111 12666665432111 2467899999999999987433221
Q ss_pred -cceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeee-ccccccCC--C-ceeEEEECCEEEEEeccC---CcEEE
Q 040145 245 -ASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES-MAVGLREG--W-TGSSVVVYEHLFVVSELE---RMKLK 316 (402)
Q Consensus 245 -~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~--~-~~~~~~~~~~l~~~gg~~---~~~~~ 316 (402)
.....+.+||.||.+...... .....+..||+.+.+|.+ ++.|.... . ....+.++|+|.++.... ..+||
T Consensus 93 ~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~IW 171 (230)
T TIGR01640 93 PLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTNNFDLW 171 (230)
T ss_pred cccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCCCCcEEEE
Confidence 122377889999998754321 111269999999999995 65422211 1 122367789999886532 35788
Q ss_pred EEe-CCCCceeecCCCCCCcc--ccC--CeEEEEeCCEEEEEecCceeeeEEEEeccccc
Q 040145 317 VYD-PSTDSWETIEGPPLPEQ--ICK--PFAVNACDCRVYVVGRNLHVAVGHITRLSTSE 371 (402)
Q Consensus 317 ~yd-~~~~~W~~~~~~~~p~~--~~~--~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~ 371 (402)
+.+ .+.+.|++.-.++++.. ... ....+..+|+|++..+.. ...-+..||+.+
T Consensus 172 vl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~--~~~~~~~y~~~~ 229 (230)
T TIGR01640 172 VLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE--NPFYIFYYNVGE 229 (230)
T ss_pred EECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC--CceEEEEEeccC
Confidence 885 44667997654443211 111 123456788999888741 112377777654
No 31
>PF13964 Kelch_6: Kelch motif
Probab=99.12 E-value=2.3e-10 Score=73.57 Aligned_cols=48 Identities=27% Similarity=0.475 Sum_probs=41.7
Q ss_pred CCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccc
Q 040145 146 HGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITAR 196 (402)
Q Consensus 146 ~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r 196 (402)
..++++++ +++||++||..+. ...++++++||+.|++|+.+++||.+|
T Consensus 3 ~~~s~v~~--~~~iyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 3 YGHSAVVV--GGKIYVFGGYDNS-GKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred ccCEEEEE--CCEEEEECCCCCC-CCccccEEEEcCCCCcEEECCCCCCCC
Confidence 55677776 9999999999764 467899999999999999999999887
No 32
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.04 E-value=2.2e-10 Score=104.03 Aligned_cols=182 Identities=15% Similarity=0.140 Sum_probs=127.5
Q ss_pred CCcEEeCCCCCC------CCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecC---CCcccccc
Q 040145 128 HYCWHTIPAMPC------KDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMN---KMITARSF 198 (402)
Q Consensus 128 ~~~W~~l~~~~~------~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~---~~~~~r~~ 198 (402)
+-+|.++++... ..+..+.+|..+....++.||+.||+++ ..-..++|.|+...+.|..+. ..|..|..
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG--~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsC 315 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDG--TQDLADFWAYSVKENQWTCINRDTEGPGARSC 315 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCccc--chhHHHHHhhcCCcceeEEeecCCCCCcchhh
Confidence 445776654321 2223457788887755669999999954 356889999999999999864 47888999
Q ss_pred eEEEEEC--CEEEEEcCCCC-----CCCCCCeeEEEcCCCCcEEEcC------CCCCCCcceeEEEECCE--EEEEcccc
Q 040145 199 FASGVIG--GMIYVAGGSSA-----DLFELDSAEVLDPVKGNWRTIA------SMGTNMASYDAAVLDGK--LLVTEGWL 263 (402)
Q Consensus 199 ~~~~~~~--~~iyv~GG~~~-----~~~~~~~~~~yd~~t~~W~~~~------~~~~~~~~~~~~~~~g~--ly~~gG~~ 263 (402)
|.++..- .++|++|-.-+ .....+++|.||..++.|..+. .-|...+.|..++.+.+ ||++||..
T Consensus 316 HRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~ 395 (723)
T KOG2437|consen 316 HRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRI 395 (723)
T ss_pred hhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCee
Confidence 9988764 49999986521 1122678999999999999873 23445567777777666 99999975
Q ss_pred cCC--ccCCcEEEEeCCCCCeeeccccc---------cCCCceeE---EEECCEEEEEeccC
Q 040145 264 WPF--FVSPRGQVYDPSTDNWESMAVGL---------REGWTGSS---VVVYEHLFVVSELE 311 (402)
Q Consensus 264 ~~~--~~~~~~~~yd~~~~~W~~~~~~~---------~~~~~~~~---~~~~~~l~~~gg~~ 311 (402)
... .....++.||.....|..+.... ...+.+.+ +.-+..+|++||..
T Consensus 396 ~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~ 457 (723)
T KOG2437|consen 396 LTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQR 457 (723)
T ss_pred ccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcc
Confidence 321 22347899999999999875311 11122222 23478899999875
No 33
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.02 E-value=2.8e-10 Score=72.20 Aligned_cols=47 Identities=36% Similarity=0.563 Sum_probs=42.0
Q ss_pred cccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCC
Q 040145 195 ARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMG 241 (402)
Q Consensus 195 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 241 (402)
+|..+++++++++||++||.+......+++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 58899999999999999999875555899999999999999998876
No 34
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=98.94 E-value=1.3e-09 Score=99.08 Aligned_cols=178 Identities=15% Similarity=0.111 Sum_probs=125.6
Q ss_pred CCCCceeecCCC----------cccccceEEEEECC--EEEEEcCCCCCCCCCCeeEEEcCCCCcEEEc---CCCCCCCc
Q 040145 181 MQKNRWTVMNKM----------ITARSFFASGVIGG--MIYVAGGSSADLFELDSAEVLDPVKGNWRTI---ASMGTNMA 245 (402)
Q Consensus 181 ~~t~~W~~~~~~----------~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~~~ 245 (402)
+.+-.|.++++. |..|.+|-++...+ .||+.||.++... +.+.|.|+...+.|+.+ ...|..|.
T Consensus 236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~-l~DFW~Y~v~e~~W~~iN~~t~~PG~Rs 314 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQD-LADFWAYSVKENQWTCINRDTEGPGARS 314 (723)
T ss_pred cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchh-HHHHHhhcCCcceeEEeecCCCCCcchh
Confidence 445678887642 45689999988754 9999999998877 88999999999999987 34788888
Q ss_pred ceeEEEEC--CEEEEEcccccCC-----ccCCcEEEEeCCCCCeeecccc-----ccCCCcee-EEEECCE--EEEEecc
Q 040145 246 SYDAAVLD--GKLLVTEGWLWPF-----FVSPRGQVYDPSTDNWESMAVG-----LREGWTGS-SVVVYEH--LFVVSEL 310 (402)
Q Consensus 246 ~~~~~~~~--g~ly~~gG~~~~~-----~~~~~~~~yd~~~~~W~~~~~~-----~~~~~~~~-~~~~~~~--l~~~gg~ 310 (402)
.|..+..- .++|++|-+-+.. ....++++||..++.|.-+... -|..-+.+ .++.+.+ +||+||.
T Consensus 315 CHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr 394 (723)
T KOG2437|consen 315 CHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGR 394 (723)
T ss_pred hhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCe
Confidence 88777664 4899999764322 2345799999999999988641 12222222 3556666 9999996
Q ss_pred C-------CcEEEEEeCCCCceeecCCCC---CC----ccccCCeEE--EEeCCEEEEEecCcee
Q 040145 311 E-------RMKLKVYDPSTDSWETIEGPP---LP----EQICKPFAV--NACDCRVYVVGRNLHV 359 (402)
Q Consensus 311 ~-------~~~~~~yd~~~~~W~~~~~~~---~p----~~~~~~~~~--~~~~~~i~v~GG~~~~ 359 (402)
. -..++.||.....|..+..-- -+ ...|.++++ +.-+.++|++||....
T Consensus 395 ~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~ 459 (723)
T KOG2437|consen 395 ILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSK 459 (723)
T ss_pred eccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccc
Confidence 5 246999999999998765310 00 111334433 3457789999996544
No 35
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.93 E-value=2.9e-09 Score=67.98 Aligned_cols=49 Identities=29% Similarity=0.469 Sum_probs=43.3
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI 204 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~ 204 (402)
+++|||+||.+.......+++++||+.+++|++++++|.+|..|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 5789999999744456789999999999999999999999999998863
No 36
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.85 E-value=1e-08 Score=65.39 Aligned_cols=47 Identities=28% Similarity=0.432 Sum_probs=40.9
Q ss_pred cccceEEEEECCEEEEEcCC--CCCCCCCCeeEEEcCCCCcEEEcCCCC
Q 040145 195 ARSFFASGVIGGMIYVAGGS--SADLFELDSAEVLDPVKGNWRTIASMG 241 (402)
Q Consensus 195 ~r~~~~~~~~~~~iyv~GG~--~~~~~~~~~~~~yd~~t~~W~~~~~~~ 241 (402)
+|..|++++++++||++||. +......+++++||+++++|+.++.++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 58899999999999999999 444445889999999999999998764
No 37
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.82 E-value=6.7e-09 Score=65.77 Aligned_cols=45 Identities=27% Similarity=0.400 Sum_probs=40.3
Q ss_pred CCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccc
Q 040145 243 NMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV 287 (402)
Q Consensus 243 ~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~ 287 (402)
+|..+++++++++||++||........+.+++||+.+++|+++++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCC
Confidence 578899999999999999998866777899999999999999986
No 38
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.81 E-value=1.4e-08 Score=64.79 Aligned_cols=47 Identities=26% Similarity=0.386 Sum_probs=41.6
Q ss_pred CCEEEEEcCCC-CCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEE
Q 040145 205 GGMIYVAGGSS-ADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAV 251 (402)
Q Consensus 205 ~~~iyv~GG~~-~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~ 251 (402)
+++|||+||.+ ......+++++||+.+++|++++++|.+|..|++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence 57899999997 344458999999999999999999999999999876
No 39
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.77 E-value=6.5e-09 Score=66.45 Aligned_cols=47 Identities=26% Similarity=0.345 Sum_probs=31.2
Q ss_pred cccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCC
Q 040145 195 ARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMG 241 (402)
Q Consensus 195 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 241 (402)
||..|+++.+ +++||++||.+......+++++||+++++|++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 6889999988 5899999999776545899999999999999998877
No 40
>smart00612 Kelch Kelch domain.
Probab=98.75 E-value=1.9e-08 Score=63.67 Aligned_cols=47 Identities=38% Similarity=0.603 Sum_probs=41.0
Q ss_pred EEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECC
Q 040145 207 MIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDG 254 (402)
Q Consensus 207 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g 254 (402)
+||++||...... .+++++||+.+++|+.+++|+.+|..+++++++|
T Consensus 1 ~iyv~GG~~~~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQR-LKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCce-eeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 4899999865443 7899999999999999999999999998888764
No 41
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.65 E-value=1.2e-05 Score=70.09 Aligned_cols=199 Identities=11% Similarity=0.014 Sum_probs=114.6
Q ss_pred eeEEEeecCCCcEEeCCCCCCCCCCCCC---CceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccc
Q 040145 119 IQWQVLDLTHYCWHTIPAMPCKDKVCPH---GFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITA 195 (402)
Q Consensus 119 ~~~~~~d~~~~~W~~l~~~~~~~~~~~~---~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~ 195 (402)
..++++||.|+.|..+|+.+.+...... .++......+-+|+.+.....+ .....+.+|+..+++|+.+...+..
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~--~~~~~~~Vys~~~~~Wr~~~~~~~~ 91 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN--RNQSEHQVYTLGSNSWRTIECSPPH 91 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC--CCCccEEEEEeCCCCccccccCCCC
Confidence 3588999999999999865432111111 1111111122366666543111 1345789999999999998743321
Q ss_pred -ccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEE-cCCCCCCC----cceeEEEECCEEEEEcccccCCccC
Q 040145 196 -RSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRT-IASMGTNM----ASYDAAVLDGKLLVTEGWLWPFFVS 269 (402)
Q Consensus 196 -r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~----~~~~~~~~~g~ly~~gG~~~~~~~~ 269 (402)
......+.++|.+|.+........ ...+..||..+.+|++ ++ +|... .....+.++|+|.++........
T Consensus 92 ~~~~~~~v~~~G~lyw~~~~~~~~~-~~~IvsFDl~~E~f~~~i~-~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~-- 167 (230)
T TIGR01640 92 HPLKSRGVCINGVLYYLAYTLKTNP-DYFIVSFDVSSERFKEFIP-LPCGNSDSVDYLSLINYKGKLAVLKQKKDTNN-- 167 (230)
T ss_pred ccccCCeEEECCEEEEEEEECCCCC-cEEEEEEEcccceEeeeee-cCccccccccceEEEEECCEEEEEEecCCCCc--
Confidence 111226678999998875422111 2379999999999995 54 33322 23456677899888765432111
Q ss_pred CcEEEEe-CCCCCeeeccc-c---ccCCC--cee-EEEECCEEEEEeccC-CcEEEEEeCCCC
Q 040145 270 PRGQVYD-PSTDNWESMAV-G---LREGW--TGS-SVVVYEHLFVVSELE-RMKLKVYDPSTD 323 (402)
Q Consensus 270 ~~~~~yd-~~~~~W~~~~~-~---~~~~~--~~~-~~~~~~~l~~~gg~~-~~~~~~yd~~~~ 323 (402)
-.+++.+ -....|+++-. + .+.-. ... .+.-+|+|++..... ...+..||++++
T Consensus 168 ~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 168 FDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred EEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEeccCC
Confidence 2566665 33557986422 1 11111 112 245678888876532 224999999875
No 42
>smart00612 Kelch Kelch domain.
Probab=98.63 E-value=6.4e-08 Score=61.18 Aligned_cols=47 Identities=34% Similarity=0.537 Sum_probs=40.7
Q ss_pred EEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECC
Q 040145 158 TLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGG 206 (402)
Q Consensus 158 ~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~ 206 (402)
+||++||... ....+++++|||.+++|+.+++|+.+|..++++++++
T Consensus 1 ~iyv~GG~~~--~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDG--GQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCC--CceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 4899999854 2457899999999999999999999999999888764
No 43
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.63 E-value=9.8e-08 Score=60.83 Aligned_cols=45 Identities=29% Similarity=0.330 Sum_probs=39.1
Q ss_pred CCcceeEEEECCEEEEEccc--ccCCccCCcEEEEeCCCCCeeeccc
Q 040145 243 NMASYDAAVLDGKLLVTEGW--LWPFFVSPRGQVYDPSTDNWESMAV 287 (402)
Q Consensus 243 ~~~~~~~~~~~g~ly~~gG~--~~~~~~~~~~~~yd~~~~~W~~~~~ 287 (402)
+|..|++++++++||++||. .......+.+++||+++++|+++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 57889999999999999999 3444567799999999999999875
No 44
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.62 E-value=1.4e-06 Score=75.07 Aligned_cols=145 Identities=16% Similarity=0.240 Sum_probs=95.4
Q ss_pred eEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCC----CcEEEcC-CCCCCCcceeE
Q 040145 175 LVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVK----GNWRTIA-SMGTNMASYDA 249 (402)
Q Consensus 175 ~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t----~~W~~~~-~~~~~~~~~~~ 249 (402)
...+||+.|++++.+......-+......-+|++++.||.... ...+..|++.+ ..|.+.+ .|..+|.+.++
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~ 123 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTA 123 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcccccCCCccccc
Confidence 4668999999999876443333333333458899999998542 45677888876 5798875 58999998888
Q ss_pred EEE-CCEEEEEcccccCCccCCcEEEEeCCCC-----Ceeeccc---cccCCCceeE-EEECCEEEEEeccCCcEEEEEe
Q 040145 250 AVL-DGKLLVTEGWLWPFFVSPRGQVYDPSTD-----NWESMAV---GLREGWTGSS-VVVYEHLFVVSELERMKLKVYD 319 (402)
Q Consensus 250 ~~~-~g~ly~~gG~~~~~~~~~~~~~yd~~~~-----~W~~~~~---~~~~~~~~~~-~~~~~~l~~~gg~~~~~~~~yd 319 (402)
..+ ||+++++||.... ..+.|..... .|..+.. ..+...+-.. +.-+|+||+++.. .-.+||
T Consensus 124 ~~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~---~s~i~d 195 (243)
T PF07250_consen 124 TTLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR---GSIIYD 195 (243)
T ss_pred eECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC---CcEEEe
Confidence 777 8999999997521 2233332221 1222221 1222333333 4559999999775 467889
Q ss_pred CCCCce-eecCC
Q 040145 320 PSTDSW-ETIEG 330 (402)
Q Consensus 320 ~~~~~W-~~~~~ 330 (402)
++++++ ++++.
T Consensus 196 ~~~n~v~~~lP~ 207 (243)
T PF07250_consen 196 YKTNTVVRTLPD 207 (243)
T ss_pred CCCCeEEeeCCC
Confidence 999977 66763
No 45
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.58 E-value=8.3e-08 Score=61.25 Aligned_cols=45 Identities=16% Similarity=0.122 Sum_probs=30.7
Q ss_pred CCcceeEEEE-CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccc
Q 040145 243 NMASYDAAVL-DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV 287 (402)
Q Consensus 243 ~~~~~~~~~~-~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~ 287 (402)
+|..|+++.+ +++||++||........+++++||+++++|+++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~ 46 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPS 46 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--S
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCC
Confidence 5788999888 68999999998776778899999999999999965
No 46
>PLN02772 guanylate kinase
Probab=98.46 E-value=1.4e-06 Score=79.69 Aligned_cols=83 Identities=23% Similarity=0.255 Sum_probs=67.5
Q ss_pred ccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEc---CCCCCCCcceeEEEE-CCEEEEEcccccCCccC
Q 040145 194 TARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTI---ASMGTNMASYDAAVL-DGKLLVTEGWLWPFFVS 269 (402)
Q Consensus 194 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~~~~~~~~~~-~g~ly~~gG~~~~~~~~ 269 (402)
.++..++++.+++++||+||.++.....+.+++||..|++|... +..|.+|.+|+++++ +++|+++++.....
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~--- 99 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD--- 99 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc---
Confidence 47888999999999999999877653478999999999999875 578899999999988 68999998765332
Q ss_pred CcEEEEeCCC
Q 040145 270 PRGQVYDPST 279 (402)
Q Consensus 270 ~~~~~yd~~~ 279 (402)
.++|.....|
T Consensus 100 ~~~w~l~~~t 109 (398)
T PLN02772 100 DSIWFLEVDT 109 (398)
T ss_pred cceEEEEcCC
Confidence 3566665544
No 47
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.40 E-value=1.9e-05 Score=68.03 Aligned_cols=133 Identities=15% Similarity=0.203 Sum_probs=84.8
Q ss_pred CeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCC----CCeeeccccccCCCceeE
Q 040145 222 DSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPST----DNWESMAVGLREGWTGSS 297 (402)
Q Consensus 222 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~----~~W~~~~~~~~~~~~~~~ 297 (402)
.....||+.|++++.+.-....-+.-.+..-||++..+||..+. .+.+..|++.+ ..|.+....+..+|-.++
T Consensus 46 a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT 122 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPT 122 (243)
T ss_pred EEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcccccCCCcccc
Confidence 34578999999999875433333333334449999999998652 34677888865 679988765666555554
Q ss_pred -E-EECCEEEEEeccCCcEEEEEeCCCC-----ceeecCCCC-CCccccCCeEEEEeCCEEEEEecCc
Q 040145 298 -V-VVYEHLFVVSELERMKLKVYDPSTD-----SWETIEGPP-LPEQICKPFAVNACDCRVYVVGRNL 357 (402)
Q Consensus 298 -~-~~~~~l~~~gg~~~~~~~~yd~~~~-----~W~~~~~~~-~p~~~~~~~~~~~~~~~i~v~GG~~ 357 (402)
. .-+|+++|+||......+.+.+... .|..+.... .....-+.+..+..+|+||+++...
T Consensus 123 ~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 123 ATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG 190 (243)
T ss_pred ceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC
Confidence 3 3499999999986545554444221 121122110 0112245678888999999999953
No 48
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.38 E-value=4.5e-07 Score=57.15 Aligned_cols=42 Identities=24% Similarity=0.544 Sum_probs=36.2
Q ss_pred CCCCcHHHHHHhhccCccchhhhhhhccHhHHHhhcCchHhHH
Q 040145 53 IPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFT 95 (402)
Q Consensus 53 ~~~Lp~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~s~~~~~~ 95 (402)
|..||+|++.+|+..|+..++.++..|||+|+.+..++ .+.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~-~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDN-SLWR 42 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCC-CHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCCh-hhhh
Confidence 57899999999999999999999999999999999887 5543
No 49
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=98.35 E-value=0.00021 Score=65.41 Aligned_cols=39 Identities=18% Similarity=0.288 Sum_probs=34.7
Q ss_pred CCCCCCcHHHHHHhhccCc-cchhhhhhhccHhHHHhhcC
Q 040145 51 PFIPGLPDDVALNCLLRLP-VESHAACRAVCKRWHLLLGN 89 (402)
Q Consensus 51 ~~~~~Lp~dl~~~il~rlp-~~~l~~~~~v~k~W~~l~~s 89 (402)
..|+.||+||+..|..||| .-++.++++||+.|++.+..
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 3689999999999999995 56999999999999998764
No 50
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.31 E-value=3.5e-05 Score=67.66 Aligned_cols=270 Identities=18% Similarity=0.204 Sum_probs=142.8
Q ss_pred CCCCCc----HHHHHHhhccCccchhhhhhhccHhHHHhhcCchHhHHHH-----------hh-cCCCCCeEEEEEEeCC
Q 040145 52 FIPGLP----DDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRR-----------KE-LGFKDPWLFVFAFHKC 115 (402)
Q Consensus 52 ~~~~Lp----~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~s~~~~~~~r-----------~~-~~~~~~~l~~~gg~~~ 115 (402)
-+..|| +++.++||+.|...+|+.+..|||+|+.++..| .+.+.- +. +...+...|.|...++
T Consensus 74 Fi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg-~~WKkLie~~vr~dslWrgl~e~rqw~~~lf~~r~~ 152 (499)
T KOG0281|consen 74 FITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDG-MLWKKLIERMVRTDSLWRGLSERRQWDQYLFKNRPN 152 (499)
T ss_pred HHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccc-hHHHHHHHHhcchHHHHhhhhhccCcchhhccCCCC
Confidence 456789 999999999999999999999999999999999 654321 11 1223344454432221
Q ss_pred CCc---eeEEE---------eecCCCcEEe----CCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEE
Q 040145 116 TGK---IQWQV---------LDLTHYCWHT----IPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKY 179 (402)
Q Consensus 116 ~~~---~~~~~---------~d~~~~~W~~----l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~ 179 (402)
... +..+. .+...+.|+. +..+.++.. ..-+..++-+++...|.|-. -+.+-++
T Consensus 153 ~~~~~~n~f~~~l~pki~~di~~idsNWr~Gr~~~~rinc~Se---~skgVYClQYDD~kiVSGlr-------DnTikiW 222 (499)
T KOG0281|consen 153 DGGFPPNSFYRLLYPKIIQDIETIESNWRCGRHLLQRINCRSE---NSKGVYCLQYDDEKIVSGLR-------DNTIKIW 222 (499)
T ss_pred cCCcCCCcchhhhhHHHHHHHhhhhcchhccceeeeeecCCcc---cCCceEEEEecchhhhcccc-------cCceEEe
Confidence 110 00110 0122334542 222333221 11122233335666666544 3367777
Q ss_pred ECCCCceeecCCCcccccceEEE-EECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEE----EECC
Q 040145 180 EMQKNRWTVMNKMITARSFFASG-VIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAA----VLDG 254 (402)
Q Consensus 180 d~~t~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~----~~~g 254 (402)
|-.+..- .....+..+...+ .+++++++.|.. -+++-++|..|+. +......|.-+ .+++
T Consensus 223 D~n~~~c---~~~L~GHtGSVLCLqyd~rviisGSS------DsTvrvWDv~tge------~l~tlihHceaVLhlrf~n 287 (499)
T KOG0281|consen 223 DKNSLEC---LKILTGHTGSVLCLQYDERVIVSGSS------DSTVRVWDVNTGE------PLNTLIHHCEAVLHLRFSN 287 (499)
T ss_pred ccccHHH---HHhhhcCCCcEEeeeccceEEEecCC------CceEEEEeccCCc------hhhHHhhhcceeEEEEEeC
Confidence 7655321 1122233333333 357787777765 4568888887764 11112222222 2233
Q ss_pred EEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccCCcEEEEEeCCCCceeecCCCCC
Q 040145 255 KLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPL 333 (402)
Q Consensus 255 ~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~ 333 (402)
.+.+.... ..++-++|+..-+=..+..-+-..+...- +-++++ |++...+...+.+++..|.+...+-
T Consensus 288 g~mvtcSk------DrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k-yIVsASgDRTikvW~~st~efvRtl---- 356 (499)
T KOG0281|consen 288 GYMVTCSK------DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-YIVSASGDRTIKVWSTSTCEFVRTL---- 356 (499)
T ss_pred CEEEEecC------CceeEEEeccCchHHHHHHHHhhhhhheeeeccccc-eEEEecCCceEEEEeccceeeehhh----
Confidence 33333332 23566666655431111110111122111 445777 5554444567888898887766543
Q ss_pred CccccCCeEEEEeCCEEEEEecCcee
Q 040145 334 PEQICKPFAVNACDCRVYVVGRNLHV 359 (402)
Q Consensus 334 p~~~~~~~~~~~~~~~i~v~GG~~~~ 359 (402)
.. .+.+-++.-++|++.|-|..++.
T Consensus 357 ~g-HkRGIAClQYr~rlvVSGSSDnt 381 (499)
T KOG0281|consen 357 NG-HKRGIACLQYRDRLVVSGSSDNT 381 (499)
T ss_pred hc-ccccceehhccCeEEEecCCCce
Confidence 21 14455777899999999987655
No 51
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.30 E-value=0.0011 Score=62.75 Aligned_cols=223 Identities=14% Similarity=0.131 Sum_probs=127.4
Q ss_pred CCCeEEEEEEeCCCCceeEEEeecCCCc--EEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEE
Q 040145 103 KDPWLFVFAFHKCTGKIQWQVLDLTHYC--WHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYE 180 (402)
Q Consensus 103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~--W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d 180 (402)
.++.+|+.. ....++++|..+.+ |+.-. +.. . .+..++ .++.||+..+ ...++.+|
T Consensus 119 ~~~~v~v~~-----~~g~l~ald~~tG~~~W~~~~--~~~-----~-~ssP~v-~~~~v~v~~~--------~g~l~ald 176 (394)
T PRK11138 119 AGGKVYIGS-----EKGQVYALNAEDGEVAWQTKV--AGE-----A-LSRPVV-SDGLVLVHTS--------NGMLQALN 176 (394)
T ss_pred ECCEEEEEc-----CCCEEEEEECCCCCCcccccC--CCc-----e-ecCCEE-ECCEEEEECC--------CCEEEEEE
Confidence 466777643 22348899998775 76432 211 1 111122 2778887533 23799999
Q ss_pred CCCCc--eeecCCCcc--cccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCCC-----C---cc
Q 040145 181 MQKNR--WTVMNKMIT--ARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGTN-----M---AS 246 (402)
Q Consensus 181 ~~t~~--W~~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~-----~---~~ 246 (402)
+.|++ |+.-...+. .+...+.++.++.+|+..+ ...+..+|+.+++ |+.-...+.. + ..
T Consensus 177 ~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~-------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~ 249 (394)
T PRK11138 177 ESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGD-------NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVD 249 (394)
T ss_pred ccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcC-------CCEEEEEEccCChhhheeccccCCCccchhcccccC
Confidence 99986 876433221 1222334455777777543 3457888888765 8643211111 0 11
Q ss_pred eeEEEECCEEEEEcccccCCccCCcEEEEeCCCCC--eeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCC-
Q 040145 247 YDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTD- 323 (402)
Q Consensus 247 ~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~- 323 (402)
..-++.++.+|+.+.. ..++++|+.+++ |+.-.. . ....+..++++|+... ...++.+|+++.
T Consensus 250 ~sP~v~~~~vy~~~~~-------g~l~ald~~tG~~~W~~~~~---~--~~~~~~~~~~vy~~~~--~g~l~ald~~tG~ 315 (394)
T PRK11138 250 TTPVVVGGVVYALAYN-------GNLVALDLRSGQIVWKREYG---S--VNDFAVDGGRIYLVDQ--NDRVYALDTRGGV 315 (394)
T ss_pred CCcEEECCEEEEEEcC-------CeEEEEECCCCCEEEeecCC---C--ccCcEEECCEEEEEcC--CCeEEEEECCCCc
Confidence 2334568899986532 268999998874 875321 1 1123567899998754 347999999876
Q ss_pred -ceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEecccccccCceeeeEEE
Q 040145 324 -SWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQV 382 (402)
Q Consensus 324 -~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W~~ 382 (402)
.|+.-. +.. +...+.++.+++||+.... +.++.+|+... +..|+.
T Consensus 316 ~~W~~~~---~~~--~~~~sp~v~~g~l~v~~~~-----G~l~~ld~~tG----~~~~~~ 361 (394)
T PRK11138 316 ELWSQSD---LLH--RLLTAPVLYNGYLVVGDSE-----GYLHWINREDG----RFVAQQ 361 (394)
T ss_pred EEEcccc---cCC--CcccCCEEECCEEEEEeCC-----CEEEEEECCCC----CEEEEE
Confidence 476422 111 2223445679999876542 34777775432 346654
No 52
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.23 E-value=0.0016 Score=61.68 Aligned_cols=230 Identities=13% Similarity=0.113 Sum_probs=129.8
Q ss_pred CCCCeEEEEEEeCCCCceeEEEeecCCCc--EEeCCCCCCCC---C-CCCCCceEEEEccCCEEEEEeCccCCCCCCCce
Q 040145 102 FKDPWLFVFAFHKCTGKIQWQVLDLTHYC--WHTIPAMPCKD---K-VCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDL 175 (402)
Q Consensus 102 ~~~~~l~~~gg~~~~~~~~~~~~d~~~~~--W~~l~~~~~~~---~-~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~ 175 (402)
..++.+|+.... ..+++||..+.+ |+.-..-.... . ......+.++ .++.||+.+. ...
T Consensus 67 v~~~~vy~~~~~-----g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~--------~g~ 131 (394)
T PRK11138 67 VAYNKVYAADRA-----GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSE--------KGQ 131 (394)
T ss_pred EECCEEEEECCC-----CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcC--------CCE
Confidence 357788876522 258899988765 86422111000 0 0001111223 3778887432 237
Q ss_pred EEEEECCCCc--eeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCC--CCcceeE
Q 040145 176 VLKYEMQKNR--WTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGT--NMASYDA 249 (402)
Q Consensus 176 ~~~~d~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~--~~~~~~~ 249 (402)
++.+|..|++ |+.-.+ .. ...+.++.++.+|+..+ ...++.||+++++ |+.-...+. .+...+-
T Consensus 132 l~ald~~tG~~~W~~~~~--~~-~~ssP~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP 201 (394)
T PRK11138 132 VYALNAEDGEVAWQTKVA--GE-ALSRPVVSDGLVLVHTS-------NGMLQALNESDGAVKWTVNLDVPSLTLRGESAP 201 (394)
T ss_pred EEEEECCCCCCcccccCC--Cc-eecCCEEECCEEEEECC-------CCEEEEEEccCCCEeeeecCCCCcccccCCCCC
Confidence 9999999885 866322 11 12233456788887543 3468999999876 876533221 1122233
Q ss_pred EEECCEEEEEcccccCCccCCcEEEEeCCCC--Ceeec-cccccCC-------CceeEEEECCEEEEEeccCCcEEEEEe
Q 040145 250 AVLDGKLLVTEGWLWPFFVSPRGQVYDPSTD--NWESM-AVGLREG-------WTGSSVVVYEHLFVVSELERMKLKVYD 319 (402)
Q Consensus 250 ~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~--~W~~~-~~~~~~~-------~~~~~~~~~~~l~~~gg~~~~~~~~yd 319 (402)
++.++.+|+..+. ..++.+|.+++ .|+.- ..+.... .....++.++.+|+.+. ...++.+|
T Consensus 202 ~v~~~~v~~~~~~-------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~--~g~l~ald 272 (394)
T PRK11138 202 ATAFGGAIVGGDN-------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY--NGNLVALD 272 (394)
T ss_pred EEECCEEEEEcCC-------CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc--CCeEEEEE
Confidence 4557777775442 26788998876 48642 2111100 01122567899998654 34799999
Q ss_pred CCCCc--eeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEecccccccCceeeeEEE
Q 040145 320 PSTDS--WETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQV 382 (402)
Q Consensus 320 ~~~~~--W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W~~ 382 (402)
+++.+ |+.-. .. ....+..+++||+.... +.++.+|+... ...|+.
T Consensus 273 ~~tG~~~W~~~~----~~----~~~~~~~~~~vy~~~~~-----g~l~ald~~tG----~~~W~~ 320 (394)
T PRK11138 273 LRSGQIVWKREY----GS----VNDFAVDGGRIYLVDQN-----DRVYALDTRGG----VELWSQ 320 (394)
T ss_pred CCCCCEEEeecC----CC----ccCcEEECCEEEEEcCC-----CeEEEEECCCC----cEEEcc
Confidence 98764 87532 11 11345678999997653 45777776332 346754
No 53
>PF13854 Kelch_5: Kelch motif
Probab=98.18 E-value=4.9e-06 Score=50.84 Aligned_cols=41 Identities=27% Similarity=0.240 Sum_probs=34.9
Q ss_pred CcccccceEEEEECCEEEEEcCCCC-CCCCCCeeEEEcCCCC
Q 040145 192 MITARSFFASGVIGGMIYVAGGSSA-DLFELDSAEVLDPVKG 232 (402)
Q Consensus 192 ~~~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~yd~~t~ 232 (402)
+|.+|..|++++++++||++||... .....+++++||..+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4778999999999999999999983 4445899999998763
No 54
>PLN02772 guanylate kinase
Probab=98.16 E-value=1.5e-05 Score=73.12 Aligned_cols=81 Identities=20% Similarity=0.130 Sum_probs=61.6
Q ss_pred CCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeecc--ccccCCCceeE-EEE-CCEEEEEeccC--CcEEE
Q 040145 243 NMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMA--VGLREGWTGSS-VVV-YEHLFVVSELE--RMKLK 316 (402)
Q Consensus 243 ~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~--~~~~~~~~~~~-~~~-~~~l~~~gg~~--~~~~~ 316 (402)
++..++++.+++++|++||.++.....+.+++||..+.+|.... -..|.++.+++ |++ +++|+++++.. ..++|
T Consensus 24 ~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~~~~w 103 (398)
T PLN02772 24 PKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPDDSIW 103 (398)
T ss_pred CCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCccceE
Confidence 67788999999999999998775545679999999999999765 24555555555 445 79999997544 45777
Q ss_pred EEeCCCC
Q 040145 317 VYDPSTD 323 (402)
Q Consensus 317 ~yd~~~~ 323 (402)
.+..+|.
T Consensus 104 ~l~~~t~ 110 (398)
T PLN02772 104 FLEVDTP 110 (398)
T ss_pred EEEcCCH
Confidence 7777654
No 55
>PF13854 Kelch_5: Kelch motif
Probab=98.09 E-value=1e-05 Score=49.44 Aligned_cols=40 Identities=15% Similarity=0.065 Sum_probs=34.9
Q ss_pred CCCCCcceeEEEECCEEEEEccccc-CCccCCcEEEEeCCC
Q 040145 240 MGTNMASYDAAVLDGKLLVTEGWLW-PFFVSPRGQVYDPST 279 (402)
Q Consensus 240 ~~~~~~~~~~~~~~g~ly~~gG~~~-~~~~~~~~~~yd~~~ 279 (402)
+|.+|..|++++++++||++||... .....+++++||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 4789999999999999999999984 566678999999876
No 56
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.05 E-value=0.011 Score=55.82 Aligned_cols=215 Identities=17% Similarity=0.156 Sum_probs=117.8
Q ss_pred CCCeEEEEEEeCCCCceeEEEeecCCCc--EEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEE
Q 040145 103 KDPWLFVFAFHKCTGKIQWQVLDLTHYC--WHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYE 180 (402)
Q Consensus 103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~--W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d 180 (402)
.++.+|+... ...++++|+.+.+ |+.- ++.. . ....++ .++.+|+..+ ...++.+|
T Consensus 104 ~~~~v~v~~~-----~g~l~ald~~tG~~~W~~~--~~~~-----~-~~~p~v-~~~~v~v~~~--------~g~l~a~d 161 (377)
T TIGR03300 104 DGGLVFVGTE-----KGEVIALDAEDGKELWRAK--LSSE-----V-LSPPLV-ANGLVVVRTN--------DGRLTALD 161 (377)
T ss_pred cCCEEEEEcC-----CCEEEEEECCCCcEeeeec--cCce-----e-ecCCEE-ECCEEEEECC--------CCeEEEEE
Confidence 4566665432 2358899987765 7643 2211 1 111122 2677777532 23699999
Q ss_pred CCCCc--eeecCCCcc--cccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCCCC--------cc
Q 040145 181 MQKNR--WTVMNKMIT--ARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGTNM--------AS 246 (402)
Q Consensus 181 ~~t~~--W~~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~--------~~ 246 (402)
+.+++ |+.-...+. .+...+.+..++.+|+ |.. ...+..+|+.+++ |+.--..+... ..
T Consensus 162 ~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~------~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~ 234 (377)
T TIGR03300 162 AATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GFA------GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVD 234 (377)
T ss_pred cCCCceeeEEccCCCceeecCCCCCEEECCEEEE-ECC------CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccC
Confidence 99885 765322211 1222334455666554 332 3468899988764 86432211111 11
Q ss_pred eeEEEECCEEEEEcccccCCccCCcEEEEeCCCCC--eeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCC-
Q 040145 247 YDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTD- 323 (402)
Q Consensus 247 ~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~- 323 (402)
...++.++.+|+.... ..+++||+++++ |..-.. .....+..++++|+... ...++.+|..+.
T Consensus 235 ~~p~~~~~~vy~~~~~-------g~l~a~d~~tG~~~W~~~~~-----~~~~p~~~~~~vyv~~~--~G~l~~~d~~tG~ 300 (377)
T TIGR03300 235 GDPVVDGGQVYAVSYQ-------GRVAALDLRSGRVLWKRDAS-----SYQGPAVDDNRLYVTDA--DGVVVALDRRSGS 300 (377)
T ss_pred CccEEECCEEEEEEcC-------CEEEEEECCCCcEEEeeccC-----CccCceEeCCEEEEECC--CCeEEEEECCCCc
Confidence 2234568888886532 268999998764 754311 11122467889987643 457999999765
Q ss_pred -ceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEecccc
Q 040145 324 -SWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTS 370 (402)
Q Consensus 324 -~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~ 370 (402)
.|+... +.. ....+.++.+++||+... .+.++.+|+.
T Consensus 301 ~~W~~~~---~~~--~~~ssp~i~g~~l~~~~~-----~G~l~~~d~~ 338 (377)
T TIGR03300 301 ELWKNDE---LKY--RQLTAPAVVGGYLVVGDF-----EGYLHWLSRE 338 (377)
T ss_pred EEEcccc---ccC--CccccCEEECCEEEEEeC-----CCEEEEEECC
Confidence 476522 221 122234456888887543 2347777753
No 57
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.04 E-value=0.011 Score=55.65 Aligned_cols=222 Identities=18% Similarity=0.190 Sum_probs=121.7
Q ss_pred CCCeEEEEEEeCCCCceeEEEeecCCCc--EEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEE
Q 040145 103 KDPWLFVFAFHKCTGKIQWQVLDLTHYC--WHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYE 180 (402)
Q Consensus 103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~--W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d 180 (402)
.++.+|+...+ ..+++||+.+.+ |+.-..-. . .+..++ .++.+|+.+. ...++.+|
T Consensus 64 ~~~~v~v~~~~-----g~v~a~d~~tG~~~W~~~~~~~-------~-~~~p~v-~~~~v~v~~~--------~g~l~ald 121 (377)
T TIGR03300 64 AGGKVYAADAD-----GTVVALDAETGKRLWRVDLDER-------L-SGGVGA-DGGLVFVGTE--------KGEVIALD 121 (377)
T ss_pred ECCEEEEECCC-----CeEEEEEccCCcEeeeecCCCC-------c-ccceEE-cCCEEEEEcC--------CCEEEEEE
Confidence 46667765422 348899988776 76422111 1 112222 3667776432 23799999
Q ss_pred CCCCc--eeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCC--CCcceeEEEECC
Q 040145 181 MQKNR--WTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGT--NMASYDAAVLDG 254 (402)
Q Consensus 181 ~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~--~~~~~~~~~~~g 254 (402)
..|++ |+.-.. .. .....+..++.+|+..+ ...++.+|+.+++ |+.-...+. .+.....+..++
T Consensus 122 ~~tG~~~W~~~~~--~~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~ 191 (377)
T TIGR03300 122 AEDGKELWRAKLS--SE-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADG 191 (377)
T ss_pred CCCCcEeeeeccC--ce-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECC
Confidence 98885 765322 11 11223445777777543 3558999998765 875432221 112223345577
Q ss_pred EEEEEcccccCCccCCcEEEEeCCCC--Ceeeccc-cccC-------CCceeEEEECCEEEEEeccCCcEEEEEeCCCC-
Q 040145 255 KLLVTEGWLWPFFVSPRGQVYDPSTD--NWESMAV-GLRE-------GWTGSSVVVYEHLFVVSELERMKLKVYDPSTD- 323 (402)
Q Consensus 255 ~ly~~gG~~~~~~~~~~~~~yd~~~~--~W~~~~~-~~~~-------~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~- 323 (402)
.+|+ +... ..+..+|+.++ .|+.-.. +... ......+..++.+|+... ...++.||+++.
T Consensus 192 ~v~~-~~~~------g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~--~g~l~a~d~~tG~ 262 (377)
T TIGR03300 192 GVLV-GFAG------GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY--QGRVAALDLRSGR 262 (377)
T ss_pred EEEE-ECCC------CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc--CCEEEEEECCCCc
Confidence 6654 3221 26889998876 4864211 1100 011122456888887643 347999999775
Q ss_pred -ceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEecccccccCceeeeEEE
Q 040145 324 -SWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQV 382 (402)
Q Consensus 324 -~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W~~ 382 (402)
.|..-. + .....++.+++||+... .+.++.+|.... ...|+.
T Consensus 263 ~~W~~~~----~----~~~~p~~~~~~vyv~~~-----~G~l~~~d~~tG----~~~W~~ 305 (377)
T TIGR03300 263 VLWKRDA----S----SYQGPAVDDNRLYVTDA-----DGVVVALDRRSG----SELWKN 305 (377)
T ss_pred EEEeecc----C----CccCceEeCCEEEEECC-----CCeEEEEECCCC----cEEEcc
Confidence 375531 1 12244567899998764 245777775332 346765
No 58
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=98.01 E-value=0.0062 Score=56.23 Aligned_cols=124 Identities=14% Similarity=0.166 Sum_probs=84.1
Q ss_pred eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCC------CC
Q 040145 149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFE------LD 222 (402)
Q Consensus 149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~------~~ 222 (402)
..+++ .+.+|+..+.. ....+||+.|..-...|.+..+.....++.++++||++......... .-
T Consensus 70 ~F~al-~gskIv~~d~~--------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~F 140 (342)
T PF07893_consen 70 DFFAL-HGSKIVAVDQS--------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCF 140 (342)
T ss_pred EEEEe-cCCeEEEEcCC--------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeE
Confidence 33343 48899988654 25889999999999999988887777778889999999876332210 22
Q ss_pred eeEEEcC--------CCCcEEEcCCCCCCCcc-------eeEEEE-CCEEEE-EcccccCCccCCcEEEEeCCCCCeeec
Q 040145 223 SAEVLDP--------VKGNWRTIASMGTNMAS-------YDAAVL-DGKLLV-TEGWLWPFFVSPRGQVYDPSTDNWESM 285 (402)
Q Consensus 223 ~~~~yd~--------~t~~W~~~~~~~~~~~~-------~~~~~~-~g~ly~-~gG~~~~~~~~~~~~~yd~~~~~W~~~ 285 (402)
++..|++ .+-.|+.++++|..... .+-+++ +..|++ +.+.. ...+.||.++.+|+..
T Consensus 141 E~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 141 EALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYSFDTESHEWRKH 214 (342)
T ss_pred EEeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEEEEcCCcceeec
Confidence 3444452 23368888877765432 233455 456777 33321 2589999999999999
Q ss_pred cc
Q 040145 286 AV 287 (402)
Q Consensus 286 ~~ 287 (402)
..
T Consensus 215 Gd 216 (342)
T PF07893_consen 215 GD 216 (342)
T ss_pred cc
Confidence 76
No 59
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.95 E-value=3.7e-06 Score=53.26 Aligned_cols=41 Identities=27% Similarity=0.486 Sum_probs=34.7
Q ss_pred CCCCcHHHHHHhhccCccchhhhhhhccHhHHHhhcCchHhH
Q 040145 53 IPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFF 94 (402)
Q Consensus 53 ~~~Lp~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~s~~~~~ 94 (402)
|..||+|++.+|+.+++..++.+++.|||+|+.++.++ .+.
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~-~~~ 43 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP-RLW 43 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH-HHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC-Ccc
Confidence 45799999999999999999999999999999999988 554
No 60
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.94 E-value=7.8e-06 Score=49.74 Aligned_cols=38 Identities=32% Similarity=0.662 Sum_probs=35.3
Q ss_pred CcHHHHHHhhccCccchhhhhhhccHhHHHhhcCchHhH
Q 040145 56 LPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFF 94 (402)
Q Consensus 56 Lp~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~s~~~~~ 94 (402)
||+|++.+|+.+++..++.++..|||+|+.++..+ .+.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~-~~~ 38 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSH-DFW 38 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCh-hhh
Confidence 79999999999999999999999999999999888 553
No 61
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.87 E-value=0.015 Score=50.71 Aligned_cols=212 Identities=22% Similarity=0.259 Sum_probs=120.3
Q ss_pred eEEEeecCCCc--EEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCc--eeecCCCccc
Q 040145 120 QWQVLDLTHYC--WHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVMNKMITA 195 (402)
Q Consensus 120 ~~~~~d~~~~~--W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~ 195 (402)
.+.++|+.+++ |+.- +.... ....+..+..++.+|+..+ ...++.+|..|++ |+.-. +.+
T Consensus 4 ~l~~~d~~tG~~~W~~~--~~~~~----~~~~~~~~~~~~~v~~~~~--------~~~l~~~d~~tG~~~W~~~~--~~~ 67 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYD--LGPGI----GGPVATAVPDGGRVYVASG--------DGNLYALDAKTGKVLWRFDL--PGP 67 (238)
T ss_dssp EEEEEETTTTEEEEEEE--CSSSC----SSEEETEEEETTEEEEEET--------TSEEEEEETTTSEEEEEEEC--SSC
T ss_pred EEEEEECCCCCEEEEEE--CCCCC----CCccceEEEeCCEEEEEcC--------CCEEEEEECCCCCEEEEeec--ccc
Confidence 36778887765 7652 11000 1112112213888998843 3389999999986 66543 222
Q ss_pred ccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EE-EcCCCCCCC--cceeEEEECCEEEEEcccccCCccCC
Q 040145 196 RSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WR-TIASMGTNM--ASYDAAVLDGKLLVTEGWLWPFFVSP 270 (402)
Q Consensus 196 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~-~~~~~~~~~--~~~~~~~~~g~ly~~gG~~~~~~~~~ 270 (402)
.... ....++.+|+... ...+..+|..++. |+ .....+... ......+.++.+|+... ..
T Consensus 68 ~~~~-~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g 132 (238)
T PF13360_consen 68 ISGA-PVVDGGRVYVGTS-------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-------SG 132 (238)
T ss_dssp GGSG-EEEETTEEEEEET-------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-------CS
T ss_pred ccce-eeecccccccccc-------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec-------cC
Confidence 1111 4777899988873 3478999988775 98 443323222 23334445777777653 13
Q ss_pred cEEEEeCCCCC--eeeccccccCC-C--------ceeEEEECCEEEEEeccCCcEEEEEeCCCCc--eeecCCCCCCccc
Q 040145 271 RGQVYDPSTDN--WESMAVGLREG-W--------TGSSVVVYEHLFVVSELERMKLKVYDPSTDS--WETIEGPPLPEQI 337 (402)
Q Consensus 271 ~~~~yd~~~~~--W~~~~~~~~~~-~--------~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~--W~~~~~~~~p~~~ 337 (402)
.+.++|+++++ |+.-.. .+.. . .+..+..++.+|+..+.. . +..+|..+.. |+... .
T Consensus 133 ~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g-~-~~~~d~~tg~~~w~~~~----~--- 202 (238)
T PF13360_consen 133 KLVALDPKTGKLLWKYPVG-EPRGSSPISSFSDINGSPVISDGRVYVSSGDG-R-VVAVDLATGEKLWSKPI----S--- 202 (238)
T ss_dssp EEEEEETTTTEEEEEEESS-TT-SS--EEEETTEEEEEECCTTEEEEECCTS-S-EEEEETTTTEEEEEECS----S---
T ss_pred cEEEEecCCCcEEEEeecC-CCCCCcceeeecccccceEEECCEEEEEcCCC-e-EEEEECCCCCEEEEecC----C---
Confidence 78999998774 765332 2221 1 112233468888876553 2 5556999886 84321 1
Q ss_pred cCCeEEEEeCCEEEEEecCceeeeEEEEecccccccCceeeeEE
Q 040145 338 CKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQ 381 (402)
Q Consensus 338 ~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W~ 381 (402)
.........++.||+.. .. +.++.+|.... +..|+
T Consensus 203 ~~~~~~~~~~~~l~~~~-~~----~~l~~~d~~tG----~~~W~ 237 (238)
T PF13360_consen 203 GIYSLPSVDGGTLYVTS-SD----GRLYALDLKTG----KVVWQ 237 (238)
T ss_dssp -ECECEECCCTEEEEEE-TT----TEEEEEETTTT----EEEEE
T ss_pred CccCCceeeCCEEEEEe-CC----CEEEEEECCCC----CEEeE
Confidence 11112556788888877 32 34788876543 45665
No 62
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.75 E-value=0.016 Score=50.54 Aligned_cols=161 Identities=22% Similarity=0.225 Sum_probs=95.1
Q ss_pred eEEEEECCCCc--eeecCCCcccccceE--EEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCCCCccee
Q 040145 175 LVLKYEMQKNR--WTVMNKMITARSFFA--SGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGTNMASYD 248 (402)
Q Consensus 175 ~~~~~d~~t~~--W~~~~~~~~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~ 248 (402)
.+..+|+.+++ |+.- +........ .+..++.+|+..+ ...+.+||..+++ |+.-. +..... .
T Consensus 4 ~l~~~d~~tG~~~W~~~--~~~~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~~~--~~~~~~-~ 71 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYD--LGPGIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKVLWRFDL--PGPISG-A 71 (238)
T ss_dssp EEEEEETTTTEEEEEEE--CSSSCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEEEEEEEC--SSCGGS-G
T ss_pred EEEEEECCCCCEEEEEE--CCCCCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCEEEEeec--cccccc-e
Confidence 67889998885 7762 211222223 3347888888853 5789999998886 76543 222122 2
Q ss_pred EEEECCEEEEEcccccCCccCCcEEEEeCCCC--Cee-eccccccC-CCceeE-EEECCEEEEEeccCCcEEEEEeCCCC
Q 040145 249 AAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTD--NWE-SMAVGLRE-GWTGSS-VVVYEHLFVVSELERMKLKVYDPSTD 323 (402)
Q Consensus 249 ~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~--~W~-~~~~~~~~-~~~~~~-~~~~~~l~~~gg~~~~~~~~yd~~~~ 323 (402)
....++.+|+.... ..++++|..++ .|+ ........ ...... ...++.+|+... ...+..+|+++.
T Consensus 72 ~~~~~~~v~v~~~~-------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~l~~~d~~tG 142 (238)
T PF13360_consen 72 PVVDGGRVYVGTSD-------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS--SGKLVALDPKTG 142 (238)
T ss_dssp EEEETTEEEEEETT-------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET--CSEEEEEETTTT
T ss_pred eeecccccccccce-------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec--cCcEEEEecCCC
Confidence 46778999887632 27999998776 488 34331111 222223 344666766543 458999999876
Q ss_pred --ceeecCCCCCCccc-------cCCeEEEEeCCEEEEEecCce
Q 040145 324 --SWETIEGPPLPEQI-------CKPFAVNACDCRVYVVGRNLH 358 (402)
Q Consensus 324 --~W~~~~~~~~p~~~-------~~~~~~~~~~~~i~v~GG~~~ 358 (402)
.|+.-. ..+... ......+..++.||+..+...
T Consensus 143 ~~~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~ 184 (238)
T PF13360_consen 143 KLLWKYPV--GEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR 184 (238)
T ss_dssp EEEEEEES--STT-SS--EEEETTEEEEEECCTTEEEEECCTSS
T ss_pred cEEEEeec--CCCCCCcceeeecccccceEEECCEEEEEcCCCe
Confidence 477643 222110 112344556788999887654
No 63
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.61 E-value=0.02 Score=50.31 Aligned_cols=199 Identities=18% Similarity=0.147 Sum_probs=108.7
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCc
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGN 233 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 233 (402)
++.||+..-. ...++++|+.+++-....... ..+++.. ++.+|+... ....++|+.+++
T Consensus 11 ~g~l~~~D~~-------~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~--------~~~~~~d~~~g~ 71 (246)
T PF08450_consen 11 DGRLYWVDIP-------GGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADS--------GGIAVVDPDTGK 71 (246)
T ss_dssp TTEEEEEETT-------TTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEET--------TCEEEEETTTTE
T ss_pred CCEEEEEEcC-------CCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEc--------CceEEEecCCCc
Confidence 6788887432 448999999998765432211 3344444 688888864 345677999999
Q ss_pred EEEcCCCCC---CCcce--eEEEECCEEEEEcccccCCccC--CcEEEEeCCCCCeeeccccccCCCceeEEEECCE-EE
Q 040145 234 WRTIASMGT---NMASY--DAAVLDGKLLVTEGWLWPFFVS--PRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEH-LF 305 (402)
Q Consensus 234 W~~~~~~~~---~~~~~--~~~~~~g~ly~~gG~~~~~~~~--~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-l~ 305 (402)
++.+...+. +.... .++.-+|.||+..-........ ..++++++. ++...+...+.. -.+.+..-+++ ||
T Consensus 72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~-pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 72 VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGF-PNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESS-EEEEEEETTSSEEE
T ss_pred EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCccc-ccceEECCcchhee
Confidence 988865531 22222 2333378898864322211111 368999998 665555432211 12222334554 66
Q ss_pred EEeccCCcEEEEEeCCCCc--eeecCC-CCCCccccCCeEEEE-eCCEEEEEecCceeeeEEEEecccccccCceeeeEE
Q 040145 306 VVSELERMKLKVYDPSTDS--WETIEG-PPLPEQICKPFAVNA-CDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQ 381 (402)
Q Consensus 306 ~~gg~~~~~~~~yd~~~~~--W~~~~~-~~~p~~~~~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W~ 381 (402)
+. ......|++||+.... +..... ..++......-++++ .+|+|||..-.. +.|++|+|..+ .-.
T Consensus 150 v~-ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~----~~I~~~~p~G~------~~~ 218 (246)
T PF08450_consen 150 VA-DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG----GRIVVFDPDGK------LLR 218 (246)
T ss_dssp EE-ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT----TEEEEEETTSC------EEE
T ss_pred ec-ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC----CEEEEECCCcc------EEE
Confidence 54 4446789999986433 332110 012221111224444 478999974322 34899988644 455
Q ss_pred EEeCC
Q 040145 382 VVDAP 386 (402)
Q Consensus 382 ~~~~~ 386 (402)
.+..|
T Consensus 219 ~i~~p 223 (246)
T PF08450_consen 219 EIELP 223 (246)
T ss_dssp EEE-S
T ss_pred EEcCC
Confidence 67777
No 64
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.56 E-value=0.0065 Score=56.12 Aligned_cols=123 Identities=20% Similarity=0.174 Sum_probs=82.4
Q ss_pred ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCcc------CCcEEEEeC
Q 040145 204 IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFV------SPRGQVYDP 277 (402)
Q Consensus 204 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~------~~~~~~yd~ 277 (402)
.+.+|+.++.. ..+.+||..|..-...|.++.+.....++.++++||++......... .-.+..|+.
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~ 147 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRP 147 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecccc
Confidence 58899999764 44899999999988888888877777778889999999876432111 112344442
Q ss_pred --------CCCCeeeccccccCCCc------eeE-EEE-CCEEEE-EeccCCcEEEEEeCCCCceeecCCCCCC
Q 040145 278 --------STDNWESMAVGLREGWT------GSS-VVV-YEHLFV-VSELERMKLKVYDPSTDSWETIEGPPLP 334 (402)
Q Consensus 278 --------~~~~W~~~~~~~~~~~~------~~~-~~~-~~~l~~-~gg~~~~~~~~yd~~~~~W~~~~~~~~p 334 (402)
....|+.+++++-.... -.+ +++ +..|+| +.+. ....+.||.++.+|+++..-.||
T Consensus 148 ~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~-~~GTysfDt~~~~W~~~GdW~LP 220 (342)
T PF07893_consen 148 PPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGR-RWGTYSFDTESHEWRKHGDWMLP 220 (342)
T ss_pred ccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCC-ceEEEEEEcCCcceeeccceecC
Confidence 23367888763211111 122 566 666777 3222 12589999999999999876677
No 65
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.55 E-value=0.015 Score=50.37 Aligned_cols=105 Identities=12% Similarity=0.095 Sum_probs=69.6
Q ss_pred EEE-EEeCccCCCCCCCceEEEEECCCCc----e-------eecCCCcccccceEEEEE--CC--EEEEEcCCCC----C
Q 040145 158 TLF-VCGGMVSDVDCPLDLVLKYEMQKNR----W-------TVMNKMITARSFFASGVI--GG--MIYVAGGSSA----D 217 (402)
Q Consensus 158 ~i~-v~GG~~~~~~~~~~~~~~~d~~t~~----W-------~~~~~~~~~r~~~~~~~~--~~--~iyv~GG~~~----~ 217 (402)
..| +-||...++ ..++.+|+....+.. - ......|.+|++|++.++ .| ...++||..- .
T Consensus 39 ~~YlIHGGrTPNN-ElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~q 117 (337)
T PF03089_consen 39 EQYLIHGGRTPNN-ELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQ 117 (337)
T ss_pred eeEEecCCcCCCc-ccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccc
Confidence 344 456665433 556778877655432 1 113578999999988765 23 4677888731 0
Q ss_pred ---------CCCCCeeEEEcCCCCcEE--EcCCCCCCCcceeEEEECCEEEEEcccc
Q 040145 218 ---------LFELDSAEVLDPVKGNWR--TIASMGTNMASYDAAVLDGKLLVTEGWL 263 (402)
Q Consensus 218 ---------~~~~~~~~~yd~~t~~W~--~~~~~~~~~~~~~~~~~~g~ly~~gG~~ 263 (402)
-.+...|+.+|++-+-.+ .++++......|.+..-++.+|++||..
T Consensus 118 RTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHs 174 (337)
T PF03089_consen 118 RTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHS 174 (337)
T ss_pred cchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEE
Confidence 112356777888766554 4577777778888888899999999975
No 66
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.50 E-value=0.02 Score=50.37 Aligned_cols=214 Identities=21% Similarity=0.224 Sum_probs=115.8
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK 183 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t 183 (402)
++.||+.. .....++.+|+.+..-..+. .+ ...+++....++.+|+.... .+.++|+.+
T Consensus 11 ~g~l~~~D----~~~~~i~~~~~~~~~~~~~~-~~-------~~~G~~~~~~~g~l~v~~~~---------~~~~~d~~~ 69 (246)
T PF08450_consen 11 DGRLYWVD----IPGGRIYRVDPDTGEVEVID-LP-------GPNGMAFDRPDGRLYVADSG---------GIAVVDPDT 69 (246)
T ss_dssp TTEEEEEE----TTTTEEEEEETTTTEEEEEE-SS-------SEEEEEEECTTSEEEEEETT---------CEEEEETTT
T ss_pred CCEEEEEE----cCCCEEEEEECCCCeEEEEe-cC-------CCceEEEEccCCEEEEEEcC---------ceEEEecCC
Confidence 56677764 23346889999988765432 22 11344444347889888654 467779999
Q ss_pred CceeecCCCc-----ccccceEEEEECCEEEEEcCCCCCCCCC--CeeEEEcCCCCcEEEcC-CCCCCCcceeEEEE-CC
Q 040145 184 NRWTVMNKMI-----TARSFFASGVIGGMIYVAGGSSADLFEL--DSAEVLDPVKGNWRTIA-SMGTNMASYDAAVL-DG 254 (402)
Q Consensus 184 ~~W~~~~~~~-----~~r~~~~~~~~~~~iyv~GG~~~~~~~~--~~~~~yd~~t~~W~~~~-~~~~~~~~~~~~~~-~g 254 (402)
++++.+...+ ..+.+-.++.-++.||+..-........ ..++++++. ++.+.+. .+..+ -+.+.. ++
T Consensus 70 g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p---NGi~~s~dg 145 (246)
T PF08450_consen 70 GKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP---NGIAFSPDG 145 (246)
T ss_dssp TEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE---EEEEEETTS
T ss_pred CcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc---cceEECCcc
Confidence 9988876553 2222333333467888864322211112 568999998 6655442 22111 122222 44
Q ss_pred -EEEEEcccccCCccCCcEEEEeCCCCC--eeeccc--cccCCC---ceeEEEECCEEEEEeccCCcEEEEEeCCCCcee
Q 040145 255 -KLLVTEGWLWPFFVSPRGQVYDPSTDN--WESMAV--GLREGW---TGSSVVVYEHLFVVSELERMKLKVYDPSTDSWE 326 (402)
Q Consensus 255 -~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~~~~--~~~~~~---~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~ 326 (402)
.||+.-.. ...+++||+.... +..... ..+... .+.++--+|+||+. ......|.+||++...-.
T Consensus 146 ~~lyv~ds~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va-~~~~~~I~~~~p~G~~~~ 218 (246)
T PF08450_consen 146 KTLYVADSF------NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVA-DWGGGRIVVFDPDGKLLR 218 (246)
T ss_dssp SEEEEEETT------TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEE-EETTTEEEEEETTSCEEE
T ss_pred hheeecccc------cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEE-EcCCCEEEEECCCccEEE
Confidence 57775432 3468999986433 433221 122221 12223347899986 334668999999966566
Q ss_pred ecCCCCCCccccCCeEEEE---eCCEEEEEe
Q 040145 327 TIEGPPLPEQICKPFAVNA---CDCRVYVVG 354 (402)
Q Consensus 327 ~~~~~~~p~~~~~~~~~~~---~~~~i~v~G 354 (402)
++. +|.. ...+++. -.+.|||..
T Consensus 219 ~i~---~p~~--~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 219 EIE---LPVP--RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEE----SSS--SEEEEEEESTTSSEEEEEE
T ss_pred EEc---CCCC--CEEEEEEECCCCCEEEEEe
Confidence 665 4421 2233333 235688764
No 67
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.36 E-value=0.025 Score=49.01 Aligned_cols=105 Identities=11% Similarity=0.110 Sum_probs=63.5
Q ss_pred EEEEEcCCCCCCCCCCeeEEEcCCCCc--------E---EEcCCCCCCCcceeEEEE--CC--EEEEEccccc--CC---
Q 040145 207 MIYVAGGSSADLFELDSAEVLDPVKGN--------W---RTIASMGTNMASYDAAVL--DG--KLLVTEGWLW--PF--- 266 (402)
Q Consensus 207 ~iyv~GG~~~~~~~~~~~~~yd~~t~~--------W---~~~~~~~~~~~~~~~~~~--~g--~ly~~gG~~~--~~--- 266 (402)
.-++.||...+...+..+++....+.. . ..+++.|.+|++|+..++ .| ...+|||..- ..
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 445568876554446666666554322 1 123789999999987655 34 3677888631 00
Q ss_pred --------ccCCcEEEEeCCCCCeeecc-ccccCCCceeE-EEECCEEEEEeccC
Q 040145 267 --------FVSPRGQVYDPSTDNWESMA-VGLREGWTGSS-VVVYEHLFVVSELE 311 (402)
Q Consensus 267 --------~~~~~~~~yd~~~~~W~~~~-~~~~~~~~~~~-~~~~~~l~~~gg~~ 311 (402)
.....++.+|++.+..+.-. +.+..+...+. .+-++.+|++||+.
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHs 174 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHS 174 (337)
T ss_pred hhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEE
Confidence 11235677888877665432 12444444444 57799999999986
No 68
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.35 E-value=0.033 Score=48.50 Aligned_cols=158 Identities=15% Similarity=0.145 Sum_probs=99.8
Q ss_pred CCceEEEEc-cCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCee
Q 040145 146 HGFRCVSIP-REGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSA 224 (402)
Q Consensus 146 ~~~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 224 (402)
..|...-.. .++.+|...|..+ .+.+..+|+.|++-....++|..-.+-+++.++++||..=-. ....
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG-----~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk------~~~~ 112 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYG-----QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK------EGTG 112 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTT-----EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS------SSEE
T ss_pred cccCccEEecCCCEEEEeCCCCC-----cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec------CCeE
Confidence 344443332 4789999888743 468999999999877666777777778999999999998654 5678
Q ss_pred EEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCee-eccc---cccCCCceeEEEE
Q 040145 225 EVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWE-SMAV---GLREGWTGSSVVV 300 (402)
Q Consensus 225 ~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~-~~~~---~~~~~~~~~~~~~ 300 (402)
++||+.+ .+.+...+.+..+++.+.-+..+++.-|. +.++..||++-+=. .+.. ..|.....-.=.+
T Consensus 113 f~yd~~t--l~~~~~~~y~~EGWGLt~dg~~Li~SDGS-------~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i 183 (264)
T PF05096_consen 113 FVYDPNT--LKKIGTFPYPGEGWGLTSDGKRLIMSDGS-------SRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI 183 (264)
T ss_dssp EEEETTT--TEEEEEEE-SSS--EEEECSSCEEEE-SS-------SEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE
T ss_pred EEEcccc--ceEEEEEecCCcceEEEcCCCEEEEECCc-------cceEEECCcccceEEEEEEEECCEECCCcEeEEEE
Confidence 9999986 45555566666788888767788887773 58899999863321 1221 1122222222245
Q ss_pred CCEEEEEeccCCcEEEEEeCCCCc
Q 040145 301 YEHLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 301 ~~~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
+|.||.== ...+.|.+.||++..
T Consensus 184 ~G~IyANV-W~td~I~~Idp~tG~ 206 (264)
T PF05096_consen 184 NGKIYANV-WQTDRIVRIDPETGK 206 (264)
T ss_dssp TTEEEEEE-TTSSEEEEEETTT-B
T ss_pred cCEEEEEe-CCCCeEEEEeCCCCe
Confidence 88877421 226789999999985
No 69
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=97.16 E-value=0.021 Score=50.84 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=70.5
Q ss_pred EEEcCCCCCCC-CCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE-CCEEEEEcccccCCccCCcEEEEeCCCCCeeecc
Q 040145 209 YVAGGSSADLF-ELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL-DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMA 286 (402)
Q Consensus 209 yv~GG~~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~ 286 (402)
||-|-++..+. .-..+-.||+.+.+|..+..--.. .-...... +++||+.|-..........+..||.++.+|+.+.
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~ 80 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLG 80 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCCCceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecC
Confidence 45555544332 357788999999999987543111 11122223 6788888765543323457899999999999887
Q ss_pred ccc----cCCCceeEEE--ECCEEEEEeccC--CcEEEEEeCCCCceeecCC
Q 040145 287 VGL----REGWTGSSVV--VYEHLFVVSELE--RMKLKVYDPSTDSWETIEG 330 (402)
Q Consensus 287 ~~~----~~~~~~~~~~--~~~~l~~~gg~~--~~~~~~yd~~~~~W~~~~~ 330 (402)
... +.+-....+. -.+.+++.|... ...+..| +..+|..+..
T Consensus 81 ~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 81 GGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred CcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEE--cCCceEeccc
Confidence 622 2221111111 134577666543 2346666 4567998875
No 70
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=97.04 E-value=0.19 Score=43.73 Aligned_cols=232 Identities=17% Similarity=0.162 Sum_probs=132.3
Q ss_pred EEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecC-CCcccccce
Q 040145 121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMN-KMITARSFF 199 (402)
Q Consensus 121 ~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~-~~~~~r~~~ 199 (402)
+-.+||.+.+-...+ ++... +-|+.++- .++..+++-+. ..+.++|+.|..-++.+ +...+..+.
T Consensus 85 iGhLdP~tGev~~yp-Lg~Ga----~Phgiv~g-pdg~~Witd~~--------~aI~R~dpkt~evt~f~lp~~~a~~nl 150 (353)
T COG4257 85 IGHLDPATGEVETYP-LGSGA----SPHGIVVG-PDGSAWITDTG--------LAIGRLDPKTLEVTRFPLPLEHADANL 150 (353)
T ss_pred ceecCCCCCceEEEe-cCCCC----CCceEEEC-CCCCeeEecCc--------ceeEEecCcccceEEeecccccCCCcc
Confidence 346899998877665 33222 23444443 46667776432 26889999998777654 122233333
Q ss_pred EEEEEC--CEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeC
Q 040145 200 ASGVIG--GMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDP 277 (402)
Q Consensus 200 ~~~~~~--~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~ 277 (402)
-..+++ +.++..|-....+ ..||.++.-+..+......-+-.++.-+|.+|+..-. -+.+...|+
T Consensus 151 et~vfD~~G~lWFt~q~G~yG-------rLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyasla------gnaiaridp 217 (353)
T COG4257 151 ETAVFDPWGNLWFTGQIGAYG-------RLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLA------GNAIARIDP 217 (353)
T ss_pred cceeeCCCccEEEeeccccce-------ecCcccCceeeeccCCCCCCcceEECCCCcEEEEecc------ccceEEccc
Confidence 334443 5777777543222 4566666544433222111122233448888886321 246788899
Q ss_pred CCCCeeecccccc--CCCceeEEEECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE-eCCEEEEEe
Q 040145 278 STDNWESMAVGLR--EGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA-CDCRVYVVG 354 (402)
Q Consensus 278 ~~~~W~~~~~~~~--~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~~i~v~G 354 (402)
.+..=+.++.+-. .......+--.+++.+.. .....+++|||.+..|.+-+ ||...-...++.+ -.|++.+.-
T Consensus 218 ~~~~aev~p~P~~~~~gsRriwsdpig~~witt-wg~g~l~rfdPs~~sW~eyp---LPgs~arpys~rVD~~grVW~se 293 (353)
T COG4257 218 FAGHAEVVPQPNALKAGSRRIWSDPIGRAWITT-WGTGSLHRFDPSVTSWIEYP---LPGSKARPYSMRVDRHGRVWLSE 293 (353)
T ss_pred ccCCcceecCCCcccccccccccCccCcEEEec-cCCceeeEeCcccccceeee---CCCCCCCcceeeeccCCcEEeec
Confidence 8886666654222 111111133457777662 23568999999999999985 6644344445554 345666532
Q ss_pred cCceeeeEEEEecccccccCceeeeEEEEeCCCCCCCcc
Q 040145 355 RNLHVAVGHITRLSTSEKKWSFSVQWQVVDAPDNFSDLT 393 (402)
Q Consensus 355 G~~~~~~~~v~~~~~~~~~~~~~~~W~~~~~~~~~~~~~ 393 (402)
=. -+.+..|||++. +-..++.|+...+.-
T Consensus 294 a~----agai~rfdpeta------~ftv~p~pr~n~gn~ 322 (353)
T COG4257 294 AD----AGAIGRFDPETA------RFTVLPIPRPNSGNI 322 (353)
T ss_pred cc----cCceeecCcccc------eEEEecCCCCCCCce
Confidence 21 234788888665 777888888777643
No 71
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.00 E-value=0.24 Score=44.41 Aligned_cols=175 Identities=14% Similarity=0.075 Sum_probs=85.2
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceee-cCCCcccccc
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTV-MNKMITARSF 198 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~-~~~~~~~r~~ 198 (402)
.+.+||+.+++-...-.... ...+......+..+|+.++. .+.+.+||..+++... ++....+
T Consensus 12 ~v~~~d~~t~~~~~~~~~~~------~~~~l~~~~dg~~l~~~~~~-------~~~v~~~d~~~~~~~~~~~~~~~~--- 75 (300)
T TIGR03866 12 TISVIDTATLEVTRTFPVGQ------RPRGITLSKDGKLLYVCASD-------SDTIQVIDLATGEVIGTLPSGPDP--- 75 (300)
T ss_pred EEEEEECCCCceEEEEECCC------CCCceEECCCCCEEEEEECC-------CCeEEEEECCCCcEEEeccCCCCc---
Confidence 57788887765432211111 11122222223456777653 2368999999887544 2221111
Q ss_pred eEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEE-ECCEEEEEcccccCCccCCcEEEE
Q 040145 199 FASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAV-LDGKLLVTEGWLWPFFVSPRGQVY 275 (402)
Q Consensus 199 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~g~ly~~gG~~~~~~~~~~~~~y 275 (402)
..++.. ++.+|+.++. ...+.+||..+.+- +..++........+. -+|++++++... .+.+..|
T Consensus 76 ~~~~~~~~g~~l~~~~~~------~~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~-----~~~~~~~ 142 (300)
T TIGR03866 76 ELFALHPNGKILYIANED------DNLVTVIDIETRKV--LAEIPVGVEPEGMAVSPDGKIVVNTSET-----TNMAHFI 142 (300)
T ss_pred cEEEECCCCCEEEEEcCC------CCeEEEEECCCCeE--EeEeeCCCCcceEEECCCCCEEEEEecC-----CCeEEEE
Confidence 122222 3456666543 34688999987542 211221111122222 367776665532 1245667
Q ss_pred eCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCc
Q 040145 276 DPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 276 d~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
|..+.+-..... ...........-+++.+++++.....+.+||.++.+
T Consensus 143 d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~ 190 (300)
T TIGR03866 143 DTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK 190 (300)
T ss_pred eCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce
Confidence 877654322111 111111122233566555555445679999998764
No 72
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.87 E-value=0.27 Score=44.10 Aligned_cols=141 Identities=16% Similarity=0.054 Sum_probs=73.0
Q ss_pred EEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-C-CEEEEEcCCCCCCCCCCeeEEEcCCCCcEE
Q 040145 158 TLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-G-GMIYVAGGSSADLFELDSAEVLDPVKGNWR 235 (402)
Q Consensus 158 ~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 235 (402)
.+|+.++.+ ..+.+||+.+++-...-.... . ...++.. + ..+|+.++. ...+.+||..+.+..
T Consensus 2 ~~~~s~~~d-------~~v~~~d~~t~~~~~~~~~~~-~-~~~l~~~~dg~~l~~~~~~------~~~v~~~d~~~~~~~ 66 (300)
T TIGR03866 2 KAYVSNEKD-------NTISVIDTATLEVTRTFPVGQ-R-PRGITLSKDGKLLYVCASD------SDTIQVIDLATGEVI 66 (300)
T ss_pred cEEEEecCC-------CEEEEEECCCCceEEEEECCC-C-CCceEECCCCCEEEEEECC------CCeEEEEECCCCcEE
Confidence 467776642 378899998875332211111 1 1122222 3 356777653 456889999887654
Q ss_pred E-cCCCCCCCcceeEEEE-CC-EEEEEcccccCCccCCcEEEEeCCCCCe-eeccccccCCCceeEEEECCEEEEEeccC
Q 040145 236 T-IASMGTNMASYDAAVL-DG-KLLVTEGWLWPFFVSPRGQVYDPSTDNW-ESMAVGLREGWTGSSVVVYEHLFVVSELE 311 (402)
Q Consensus 236 ~-~~~~~~~~~~~~~~~~-~g-~ly~~gG~~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~~l~~~gg~~ 311 (402)
. ++....+ ...+.. ++ .+|+.++.. ..+..||+.+.+- ..++. ...-......-++.+++++..+
T Consensus 67 ~~~~~~~~~---~~~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~dg~~l~~~~~~ 135 (300)
T TIGR03866 67 GTLPSGPDP---ELFALHPNGKILYIANEDD------NLVTVIDIETRKVLAEIPV--GVEPEGMAVSPDGKIVVNTSET 135 (300)
T ss_pred EeccCCCCc---cEEEECCCCCEEEEEcCCC------CeEEEEECCCCeEEeEeeC--CCCcceEEECCCCCEEEEEecC
Confidence 3 2221111 122222 44 466654421 3688999987542 11211 1111112223467777776654
Q ss_pred CcEEEEEeCCCCc
Q 040145 312 RMKLKVYDPSTDS 324 (402)
Q Consensus 312 ~~~~~~yd~~~~~ 324 (402)
...+..||..+..
T Consensus 136 ~~~~~~~d~~~~~ 148 (300)
T TIGR03866 136 TNMAHFIDTKTYE 148 (300)
T ss_pred CCeEEEEeCCCCe
Confidence 5567788987654
No 73
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.76 E-value=0.032 Score=49.66 Aligned_cols=110 Identities=14% Similarity=0.186 Sum_probs=68.3
Q ss_pred CCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCC-----CCCCCc
Q 040145 172 PLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIAS-----MGTNMA 245 (402)
Q Consensus 172 ~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~-----~~~~~~ 245 (402)
....+..||+.+.+|..+..-.... -..+... ++++|+.|-..-.......+..||..+.+|+.++. +|.+..
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence 4668999999999999876532221 1223333 67888888764444226678999999999998865 233322
Q ss_pred ceeEEEEC-CEEEEEcccccCCccCCcEEEEeCCCCCeeeccc
Q 040145 246 SYDAAVLD-GKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV 287 (402)
Q Consensus 246 ~~~~~~~~-g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~ 287 (402)
.......+ +.+++.|.... ....+..|| ..+|+.+..
T Consensus 93 a~~~~~~d~~~~~~aG~~~~---g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSAN---GSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred EEEeeccCCceEEEeceecC---CCceEEEEc--CCceEeccc
Confidence 22222223 35666665421 233577774 557998875
No 74
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=96.74 E-value=0.39 Score=47.15 Aligned_cols=285 Identities=18% Similarity=0.194 Sum_probs=136.0
Q ss_pred cCCCCCCCCCcHHHHHHhhccCccchhhhhhhccHhHHHhhcCchHhHH-H-HhhcCCC---CCeEEEEEEeCC--CCce
Q 040145 47 LRAEPFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFT-R-RKELGFK---DPWLFVFAFHKC--TGKI 119 (402)
Q Consensus 47 ~~~~~~~~~Lp~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~s~~~~~~-~-r~~~~~~---~~~l~~~gg~~~--~~~~ 119 (402)
..+...+..||.++...||..|+.+.+..++.||+.|+.+...- .... . +...... ..+-+... ... ....
T Consensus 102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~k 179 (537)
T KOG0274|consen 102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDD-KVWWRMCRELIGRLPPKCEKGLPLK-SGFKGRPWK 179 (537)
T ss_pred ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhcc-chhhhhhhhhcccCCcccCcccccc-cccccchhh
Confidence 34456788999999999999999999999999999999999876 3322 1 1111110 11111110 000 0000
Q ss_pred eEE-EeecCCCcEEeCCCCCCCCCCC--CCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccc
Q 040145 120 QWQ-VLDLTHYCWHTIPAMPCKDKVC--PHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITAR 196 (402)
Q Consensus 120 ~~~-~~d~~~~~W~~l~~~~~~~~~~--~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r 196 (402)
..+ ......+.|............. .+..-+..+ .+..++. |. ....+-+||..++.-...+.....-
T Consensus 180 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~--~~~~~~~-~s------~~~tl~~~~~~~~~~i~~~l~GH~g 250 (537)
T KOG0274|consen 180 SFYRRRFRLSKNWRKLFRRGYKVLLGTDDHVVLCLQL--HDGFFKS-GS------DDSTLHLWDLNNGYLILTRLVGHFG 250 (537)
T ss_pred hhhhhhhhccccccccccccceeecccCcchhhhhee--ecCeEEe-cC------CCceeEEeecccceEEEeeccCCCC
Confidence 011 1222334455443322111000 011111111 1111122 21 2234557887776543332211111
Q ss_pred cceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEE
Q 040145 197 SFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVY 275 (402)
Q Consensus 197 ~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~y 275 (402)
.-.+.... ++.+++.|.. ..++-+.|..++.-...- . ..............+..+|. ..+.+.++
T Consensus 251 ~V~~l~~~~~~~~lvsgS~------D~t~rvWd~~sg~C~~~l--~-gh~stv~~~~~~~~~~~sgs-----~D~tVkVW 316 (537)
T KOG0274|consen 251 GVWGLAFPSGGDKLVSGST------DKTERVWDCSTGECTHSL--Q-GHTSSVRCLTIDPFLLVSGS-----RDNTVKVW 316 (537)
T ss_pred CceeEEEecCCCEEEEEec------CCcEEeEecCCCcEEEEe--c-CCCceEEEEEccCceEeecc-----CCceEEEE
Confidence 12223332 3666777765 334556666666543321 1 11111122223344444432 23578899
Q ss_pred eCCCCCeeeccccccCCCceeE--EEECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCC-EEEE
Q 040145 276 DPSTDNWESMAVGLREGWTGSS--VVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDC-RVYV 352 (402)
Q Consensus 276 d~~~~~W~~~~~~~~~~~~~~~--~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~-~i~v 352 (402)
|..++.-..+-.. ..+++ +.+++.+.+.|..+. .|.+||+.+.+-... +...... .-...+++ ..++
T Consensus 317 ~v~n~~~l~l~~~----h~~~V~~v~~~~~~lvsgs~d~-~v~VW~~~~~~cl~s----l~gH~~~-V~sl~~~~~~~~~ 386 (537)
T KOG0274|consen 317 DVTNGACLNLLRG----HTGPVNCVQLDEPLLVSGSYDG-TVKVWDPRTGKCLKS----LSGHTGR-VYSLIVDSENRLL 386 (537)
T ss_pred eccCcceEEEecc----ccccEEEEEecCCEEEEEecCc-eEEEEEhhhceeeee----ecCCcce-EEEEEecCcceEE
Confidence 9886664443221 22222 456777777777755 899999986543332 2111011 12225566 6666
Q ss_pred EecCceeeeEEEEecc
Q 040145 353 VGRNLHVAVGHITRLS 368 (402)
Q Consensus 353 ~GG~~~~~~~~v~~~~ 368 (402)
-|+.+. ...+|+++
T Consensus 387 Sgs~D~--~IkvWdl~ 400 (537)
T KOG0274|consen 387 SGSLDT--TIKVWDLR 400 (537)
T ss_pred eeeecc--ceEeecCC
Confidence 666552 24455554
No 75
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=96.67 E-value=0.63 Score=44.39 Aligned_cols=146 Identities=12% Similarity=-0.005 Sum_probs=79.7
Q ss_pred ceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEEC
Q 040145 174 DLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLD 253 (402)
Q Consensus 174 ~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~ 253 (402)
..++++|..++.-+.+..............-+..|++....++ ...++.+|..++..+.+.......... ...-+
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~~~~~~-~~s~d 288 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGPGIDTEP-SWSPD 288 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCCCCCCCCE-EECCC
Confidence 5799999999876665543322222111111335665543322 356899999988877764432211111 11225
Q ss_pred CE-EEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccC--CcEEEEEeCCCCceeecC
Q 040145 254 GK-LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELE--RMKLKVYDPSTDSWETIE 329 (402)
Q Consensus 254 g~-ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~--~~~~~~yd~~~~~W~~~~ 329 (402)
|+ |++.....+ ...++.+|..++.+..+... ..........-+|+.+++.... ...++.+|+.+..+..+.
T Consensus 289 g~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~-~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 289 GKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFR-GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred CCEEEEEECCCC----CceEEEEECCCCCEEEeecC-CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEcc
Confidence 54 544433221 23789999988887766531 1111112223356655554432 347999999987766654
No 76
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.62 E-value=0.12 Score=47.73 Aligned_cols=187 Identities=12% Similarity=0.168 Sum_probs=99.7
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCE-EEEEeCccCCCCCCCceEEEEECC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGT-LFVCGGMVSDVDCPLDLVLKYEMQ 182 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~-i~v~GG~~~~~~~~~~~~~~~d~~ 182 (402)
.+.+++.|. ....++|..|-..+. .+..+.... ++ ...+.+..+|. ..+++|. ..-++.||..
T Consensus 225 ~plllvaG~---d~~lrifqvDGk~N~--~lqS~~l~~--fP--i~~a~f~p~G~~~i~~s~r-------rky~ysyDle 288 (514)
T KOG2055|consen 225 APLLLVAGL---DGTLRIFQVDGKVNP--KLQSIHLEK--FP--IQKAEFAPNGHSVIFTSGR-------RKYLYSYDLE 288 (514)
T ss_pred CceEEEecC---CCcEEEEEecCccCh--hheeeeecc--Cc--cceeeecCCCceEEEeccc-------ceEEEEeecc
Confidence 344444442 344556666766665 333332211 11 12222223554 6666665 3368999999
Q ss_pred CCceeecCCCcc--cccceEE-EEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEE
Q 040145 183 KNRWTVMNKMIT--ARSFFAS-GVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVT 259 (402)
Q Consensus 183 t~~W~~~~~~~~--~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~ 259 (402)
+.+-.++.++.. .+..... +..++.++++-|. ..-+++....|+.|-.--.++.......-..-+..|++.
T Consensus 289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~------~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~ 362 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN------NGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLAS 362 (514)
T ss_pred ccccccccCCCCcccchhheeEecCCCCeEEEccc------CceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEE
Confidence 999888776542 2233333 2234455566554 345677777888775433333322222222223457777
Q ss_pred cccccCCccCCcEEEEeCCCCCeeeccccccCCC-ceeE--EEECCEEEEEeccCCcEEEEEeCCC
Q 040145 260 EGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGW-TGSS--VVVYEHLFVVSELERMKLKVYDPST 322 (402)
Q Consensus 260 gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~-~~~~--~~~~~~l~~~gg~~~~~~~~yd~~~ 322 (402)
||.. .++++|+.++.-.. .....+. ++.+ ...++..+. -|.+..-|-+||.++
T Consensus 363 ~~~G-------eV~v~nl~~~~~~~--rf~D~G~v~gts~~~S~ng~ylA-~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 363 GGTG-------EVYVWNLRQNSCLH--RFVDDGSVHGTSLCISLNGSYLA-TGSDSGIVNIYDGNS 418 (514)
T ss_pred cCCc-------eEEEEecCCcceEE--EEeecCccceeeeeecCCCceEE-eccCcceEEEeccch
Confidence 7753 79999998873211 1122222 2222 246777544 455677888998754
No 77
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.48 E-value=0.17 Score=46.45 Aligned_cols=150 Identities=16% Similarity=0.123 Sum_probs=84.3
Q ss_pred CEEEEEcCC-C--CCCCCC-CeeEEEcCCCC-----cEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEe
Q 040145 206 GMIYVAGGS-S--ADLFEL-DSAEVLDPVKG-----NWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYD 276 (402)
Q Consensus 206 ~~iyv~GG~-~--~~~~~~-~~~~~yd~~t~-----~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd 276 (402)
...+++|.. . +..... ..+.+|+..+. +.+.+........-.+.+.++|+|.+..| +.+..|+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~ 113 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG--------NKLYVYD 113 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET--------TEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec--------CEEEEEE
Confidence 356666643 1 111113 66899998885 55655444444445566677898666555 3788999
Q ss_pred CCCCC-eeeccccccCCCceeE-EEECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEe-CCEEEEE
Q 040145 277 PSTDN-WESMAVGLREGWTGSS-VVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNAC-DCRVYVV 353 (402)
Q Consensus 277 ~~~~~-W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~-~~~i~v~ 353 (402)
+..+. +..... ......... .+.++.|++..-..+-.++.|+.+.++-..++.-..+ +...++..+ ++. .++
T Consensus 114 l~~~~~l~~~~~-~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~---~~v~~~~~l~d~~-~~i 188 (321)
T PF03178_consen 114 LDNSKTLLKKAF-YDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQP---RWVTAAEFLVDED-TII 188 (321)
T ss_dssp EETTSSEEEEEE-E-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS----BEEEEEEEE-SSS-EEE
T ss_pred ccCcccchhhhe-ecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCC---ccEEEEEEecCCc-EEE
Confidence 88887 777665 322223333 5678877665444566788889877767777632233 333444444 556 555
Q ss_pred ecCceeeeEEEEeccc
Q 040145 354 GRNLHVAVGHITRLST 369 (402)
Q Consensus 354 GG~~~~~~~~v~~~~~ 369 (402)
++.. .....+..+++
T Consensus 189 ~~D~-~gnl~~l~~~~ 203 (321)
T PF03178_consen 189 VGDK-DGNLFVLRYNP 203 (321)
T ss_dssp EEET-TSEEEEEEE-S
T ss_pred EEcC-CCeEEEEEECC
Confidence 5522 22334555554
No 78
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.47 E-value=0.32 Score=45.14 Aligned_cols=191 Identities=8% Similarity=0.023 Sum_probs=105.8
Q ss_pred eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce---EEEEECCEEEEEcCCCCCCCCCCeeE
Q 040145 149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF---ASGVIGGMIYVAGGSSADLFELDSAE 225 (402)
Q Consensus 149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~---~~~~~~~~iyv~GG~~~~~~~~~~~~ 225 (402)
.++.+-....+.+.+|.+ ..-.++..|-.+|. .+..+...++.. ..+..+....+.+|. ..-.+
T Consensus 217 ~sv~FHp~~plllvaG~d-----~~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r------rky~y 283 (514)
T KOG2055|consen 217 TSVQFHPTAPLLLVAGLD-----GTLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR------RKYLY 283 (514)
T ss_pred eEEEecCCCceEEEecCC-----CcEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc------ceEEE
Confidence 344443355788888884 34477777887776 343333222221 122223336777775 67789
Q ss_pred EEcCCCCcEEEcCCCCCCC--c-ceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE-C
Q 040145 226 VLDPVKGNWRTIASMGTNM--A-SYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV-Y 301 (402)
Q Consensus 226 ~yd~~t~~W~~~~~~~~~~--~-~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~ 301 (402)
.||.++.+-+++..+-.-- . ..-.+..++.+.++.|..+ .+......|+.|-.--. +...-...+..- +
T Consensus 284 syDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G------~I~lLhakT~eli~s~K-ieG~v~~~~fsSds 356 (514)
T KOG2055|consen 284 SYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG------HIHLLHAKTKELITSFK-IEGVVSDFTFSSDS 356 (514)
T ss_pred EeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCc------eEEeehhhhhhhhheee-eccEEeeEEEecCC
Confidence 9999999888875543211 1 1223455677777777542 46666777777743211 222112222223 3
Q ss_pred CEEEEEeccCCcEEEEEeCCCCc----eeecCCCCCCccccCCeEEE-EeCCEEEEEecCceeeeEEEEecccc
Q 040145 302 EHLFVVSELERMKLKVYDPSTDS----WETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLHVAVGHITRLSTS 370 (402)
Q Consensus 302 ~~l~~~gg~~~~~~~~yd~~~~~----W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~~~~~v~~~~~~ 370 (402)
.+|++.||.+ .||++|...+. |..-++ -.+.+.| ..++. |+.-|. ..++..||.++.+
T Consensus 357 k~l~~~~~~G--eV~v~nl~~~~~~~rf~D~G~-------v~gts~~~S~ng~-ylA~GS-~~GiVNIYd~~s~ 419 (514)
T KOG2055|consen 357 KELLASGGTG--EVYVWNLRQNSCLHRFVDDGS-------VHGTSLCISLNGS-YLATGS-DSGIVNIYDGNSC 419 (514)
T ss_pred cEEEEEcCCc--eEEEEecCCcceEEEEeecCc-------cceeeeeecCCCc-eEEecc-CcceEEEeccchh
Confidence 4577777764 89999998873 333221 1223333 35666 554453 3446677776543
No 79
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.44 E-value=1.7 Score=46.66 Aligned_cols=240 Identities=17% Similarity=0.148 Sum_probs=125.3
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCC--------CCCCCCCceEEEEccCCEEEEEeCccCCCCCCCce
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCK--------DKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDL 175 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~--------~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~ 175 (402)
++.+|+.. ....++.++|+....-..+...... ...+..-++.++...++.|||.... .+.
T Consensus 579 ~g~lyVaD----s~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~-------n~~ 647 (1057)
T PLN02919 579 NNRLFISD----SNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE-------NHA 647 (1057)
T ss_pred CCeEEEEE----CCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC-------Cce
Confidence 45667664 3344677888875543333321100 0011122444444335678887543 236
Q ss_pred EEEEECCCCceeecCCCc-------c--------cccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcC
Q 040145 176 VLKYEMQKNRWTVMNKMI-------T--------ARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIA 238 (402)
Q Consensus 176 ~~~~d~~t~~W~~~~~~~-------~--------~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 238 (402)
+.++|+.++.-+.+..-. . -...+.+++. ++.+|+.... ...+++||+.++....+.
T Consensus 648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~------~~~I~v~d~~~g~v~~~~ 721 (1057)
T PLN02919 648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG------QHQIWEYNISDGVTRVFS 721 (1057)
T ss_pred EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC------CCeEEEEECCCCeEEEEe
Confidence 888998887655442100 0 0122334443 5789988643 466889998877654432
Q ss_pred CC----------CC--CCcceeEEEE--CC-EEEEEcccccCCccCCcEEEEeCCCCCeeeccc--c-----c---c---
Q 040145 239 SM----------GT--NMASYDAAVL--DG-KLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV--G-----L---R--- 290 (402)
Q Consensus 239 ~~----------~~--~~~~~~~~~~--~g-~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~--~-----~---~--- 290 (402)
.- .. .......+.+ ++ .||+.... .+.+.+||+.++....+.. + . .
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC------CCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 10 00 0011122222 34 58887653 2579999988765322110 0 0 0
Q ss_pred --------CCCceeEEEECCEEEEEeccCCcEEEEEeCCCCceeecCCCCC---------CccccCCeEEEE-eCCEEEE
Q 040145 291 --------EGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPL---------PEQICKPFAVNA-CDCRVYV 352 (402)
Q Consensus 291 --------~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~---------p~~~~~~~~~~~-~~~~i~v 352 (402)
..-.+.++.-+|.+|+.... ...|.+||++++....+.+... ........++++ .+|+|||
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs~-N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyV 874 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADSY-NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFV 874 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEECC-CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEE
Confidence 00011223346789887554 6789999999887776654221 111123344444 4788999
Q ss_pred EecCceeeeEEEEeccccc
Q 040145 353 VGRNLHVAVGHITRLSTSE 371 (402)
Q Consensus 353 ~GG~~~~~~~~v~~~~~~~ 371 (402)
.-..++. |..+|..+
T Consensus 875 aDt~Nn~----Irvid~~~ 889 (1057)
T PLN02919 875 ADTNNSL----IRYLDLNK 889 (1057)
T ss_pred EECCCCE----EEEEECCC
Confidence 8776554 45555433
No 80
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=96.27 E-value=0.064 Score=41.88 Aligned_cols=78 Identities=12% Similarity=0.063 Sum_probs=54.5
Q ss_pred EEECCEEEEEcccccCCccCCcEEEEeCCCCCeeecccc--ccCCCce-eEEEECCEEEEEeccC-----CcEEEEE-eC
Q 040145 250 AVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVG--LREGWTG-SSVVVYEHLFVVSELE-----RMKLKVY-DP 320 (402)
Q Consensus 250 ~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~--~~~~~~~-~~~~~~~~l~~~gg~~-----~~~~~~y-d~ 320 (402)
+++||.+|..+.. .....+.+.+||..+.+|+.+..| ....... ..+.++|+|-++.-.. .-++|+. |.
T Consensus 2 icinGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~ 79 (129)
T PF08268_consen 2 ICINGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY 79 (129)
T ss_pred EEECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc
Confidence 4679999998776 222345899999999999988764 2222222 2368899998875433 2478888 56
Q ss_pred CCCceeecC
Q 040145 321 STDSWETIE 329 (402)
Q Consensus 321 ~~~~W~~~~ 329 (402)
++..|++..
T Consensus 80 ~k~~Wsk~~ 88 (129)
T PF08268_consen 80 EKQEWSKKH 88 (129)
T ss_pred ccceEEEEE
Confidence 678899764
No 81
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.15 E-value=1.1 Score=41.32 Aligned_cols=194 Identities=15% Similarity=0.085 Sum_probs=86.8
Q ss_pred eEEEEEEeCCCCceeEEEeecCC-CcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEEECC-
Q 040145 106 WLFVFAFHKCTGKIQWQVLDLTH-YCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQ- 182 (402)
Q Consensus 106 ~l~~~gg~~~~~~~~~~~~d~~~-~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~- 182 (402)
.+|+.... ...+..||..+ .++..+...+... . ....++..++ .||+.+.. ...+.+|+..
T Consensus 3 ~~y~~~~~----~~~I~~~~~~~~g~l~~~~~~~~~~----~-~~~l~~spd~~~lyv~~~~-------~~~i~~~~~~~ 66 (330)
T PRK11028 3 IVYIASPE----SQQIHVWNLNHEGALTLLQVVDVPG----Q-VQPMVISPDKRHLYVGVRP-------EFRVLSYRIAD 66 (330)
T ss_pred EEEEEcCC----CCCEEEEEECCCCceeeeeEEecCC----C-CccEEECCCCCEEEEEECC-------CCcEEEEEECC
Confidence 45666422 23366777653 4565554443211 1 1122232244 56664432 2467777775
Q ss_pred CCceeecCCCcccccceEEEEE-CC-EEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCCCCcceeEEEE-CC-EE
Q 040145 183 KNRWTVMNKMITARSFFASGVI-GG-MIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGTNMASYDAAVL-DG-KL 256 (402)
Q Consensus 183 t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~-~g-~l 256 (402)
+++++.+...+.+.....++.. ++ .+|+..-. ...+.+||..++. .+.+...+.....+.++.. ++ .+
T Consensus 67 ~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l 140 (330)
T PRK11028 67 DGALTFAAESPLPGSPTHISTDHQGRFLFSASYN------ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTL 140 (330)
T ss_pred CCceEEeeeecCCCCceEEEECCCCCEEEEEEcC------CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEE
Confidence 4566655433332222233333 34 56666432 3567778775431 1122222222222333333 45 45
Q ss_pred EEEcccccCCccCCcEEEEeCCCC-Ceeec-----cccccCCCceeEEEECC-EEEEEeccCCcEEEEEeCC--CCceee
Q 040145 257 LVTEGWLWPFFVSPRGQVYDPSTD-NWESM-----AVGLREGWTGSSVVVYE-HLFVVSELERMKLKVYDPS--TDSWET 327 (402)
Q Consensus 257 y~~gG~~~~~~~~~~~~~yd~~~~-~W~~~-----~~~~~~~~~~~~~~~~~-~l~~~gg~~~~~~~~yd~~--~~~W~~ 327 (402)
|+..-. .+.+.+||+.+. ..... ..+....-.+....-++ .+|+... ..+.+.+||.+ +.+.+.
T Consensus 141 ~v~~~~------~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~-~~~~v~v~~~~~~~~~~~~ 213 (330)
T PRK11028 141 WVPCLK------EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE-LNSSVDVWQLKDPHGEIEC 213 (330)
T ss_pred EEeeCC------CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec-CCCEEEEEEEeCCCCCEEE
Confidence 554321 347899998763 22211 10111111111112233 5666533 25677777765 445544
Q ss_pred c
Q 040145 328 I 328 (402)
Q Consensus 328 ~ 328 (402)
+
T Consensus 214 ~ 214 (330)
T PRK11028 214 V 214 (330)
T ss_pred E
Confidence 3
No 82
>PRK04792 tolB translocation protein TolB; Provisional
Probab=96.11 E-value=1.4 Score=42.50 Aligned_cols=147 Identities=10% Similarity=0.013 Sum_probs=81.0
Q ss_pred CceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE
Q 040145 173 LDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL 252 (402)
Q Consensus 173 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~ 252 (402)
...++++|..+++-+.+...+..........-+..|++....++ ...++++|..++..+.+....... ......-
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~~~~-~~p~wSp 315 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHRAID-TEPSWHP 315 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCCCCc-cceEECC
Confidence 35899999999877666554322221222222345665543322 457899999999887765422111 1111222
Q ss_pred CCE-EEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccC--CcEEEEEeCCCCceeecC
Q 040145 253 DGK-LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELE--RMKLKVYDPSTDSWETIE 329 (402)
Q Consensus 253 ~g~-ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~--~~~~~~yd~~~~~W~~~~ 329 (402)
+|+ |++.....+ ...++.+|+.+++++.+.... .........-+|+.+++.+.. ...++.+|+.+.....+.
T Consensus 316 DG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g-~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 316 DGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEG-EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLT 390 (448)
T ss_pred CCCEEEEEECCCC----CceEEEEECCCCCEEEEecCC-CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEcc
Confidence 554 555432221 247899999999888775211 111112233355444443322 347899999988877665
No 83
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=95.99 E-value=1.3 Score=41.06 Aligned_cols=242 Identities=14% Similarity=0.133 Sum_probs=115.0
Q ss_pred CCCeEEEEEEeC-CCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEE-ccCCEEEEEeCccCCCCCCCceEEEEE
Q 040145 103 KDPWLFVFAFHK-CTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSI-PREGTLFVCGGMVSDVDCPLDLVLKYE 180 (402)
Q Consensus 103 ~~~~l~~~gg~~-~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~d 180 (402)
.+..||+..... .......+.++..+.+.+.+...+... ..-+.+++ ..+..||+..-. ...+.+|+
T Consensus 47 ~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g----~~p~~i~~~~~g~~l~vany~-------~g~v~v~~ 115 (345)
T PF10282_consen 47 DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG----SSPCHIAVDPDGRFLYVANYG-------GGSVSVFP 115 (345)
T ss_dssp TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS----SCEEEEEECTTSSEEEEEETT-------TTEEEEEE
T ss_pred CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC----CCcEEEEEecCCCEEEEEEcc-------CCeEEEEE
Confidence 367788876432 344445566666666777665544211 11122333 234566665322 33677887
Q ss_pred CCCC-ceeecC---------CC---cccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCC-
Q 040145 181 MQKN-RWTVMN---------KM---ITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGT- 242 (402)
Q Consensus 181 ~~t~-~W~~~~---------~~---~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~- 242 (402)
...+ +-.... +- ...-+.|.+... +..+|+..-- ...+.+|+..... .........
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG------~D~v~~~~~~~~~~~l~~~~~~~~~ 189 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG------ADRVYVYDIDDDTGKLTPVDSIKVP 189 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT------TTEEEEEEE-TTS-TEEEEEEEECS
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC------CCEEEEEEEeCCCceEEEeeccccc
Confidence 7663 222211 11 112334555554 3467765321 5678888887655 544322211
Q ss_pred CCcce--eEEEECC-EEEEEcccccCCccCCcEEEEeCC--CCCeeeccc--cccCCC----ceeEEEE--CCE-EEEEe
Q 040145 243 NMASY--DAAVLDG-KLLVTEGWLWPFFVSPRGQVYDPS--TDNWESMAV--GLREGW----TGSSVVV--YEH-LFVVS 308 (402)
Q Consensus 243 ~~~~~--~~~~~~g-~ly~~gG~~~~~~~~~~~~~yd~~--~~~W~~~~~--~~~~~~----~~~~~~~--~~~-l~~~g 308 (402)
+..+. ....-++ .+|++... .+.+.+|+.. ++.++.+.. ..+... ....+.+ +|+ ||+.
T Consensus 190 ~G~GPRh~~f~pdg~~~Yv~~e~------s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvs- 262 (345)
T PF10282_consen 190 PGSGPRHLAFSPDGKYAYVVNEL------SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVS- 262 (345)
T ss_dssp TTSSEEEEEE-TTSSEEEEEETT------TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEE-
T ss_pred cCCCCcEEEEcCCcCEEEEecCC------CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEE-
Confidence 11222 2222244 67887654 2456666555 666665432 122221 1222333 454 6654
Q ss_pred ccCCcEEEEEeC--CCCceeecCCCCCCccccCCeEEEE--eCCEEEEEecCceeeeEEEEecccccc
Q 040145 309 ELERMKLKVYDP--STDSWETIEGPPLPEQICKPFAVNA--CDCRVYVVGRNLHVAVGHITRLSTSEK 372 (402)
Q Consensus 309 g~~~~~~~~yd~--~~~~W~~~~~~~~p~~~~~~~~~~~--~~~~i~v~GG~~~~~~~~v~~~~~~~~ 372 (402)
....+.|.+|+. .+.+.+.+...+. .......+.+ .++.|||.....+. ..++..|+...
T Consensus 263 nr~~~sI~vf~~d~~~g~l~~~~~~~~--~G~~Pr~~~~s~~g~~l~Va~~~s~~--v~vf~~d~~tG 326 (345)
T PF10282_consen 263 NRGSNSISVFDLDPATGTLTLVQTVPT--GGKFPRHFAFSPDGRYLYVANQDSNT--VSVFDIDPDTG 326 (345)
T ss_dssp ECTTTEEEEEEECTTTTTEEEEEEEEE--SSSSEEEEEE-TTSSEEEEEETTTTE--EEEEEEETTTT
T ss_pred eccCCEEEEEEEecCCCceEEEEEEeC--CCCCccEEEEeCCCCEEEEEecCCCe--EEEEEEeCCCC
Confidence 333567777776 4556666553222 1122223333 45556665543333 44555565444
No 84
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.0064 Score=53.27 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=37.1
Q ss_pred CCCCCCcHHHHHHhhccCccchhhhhhhccHhHHHhhcCc
Q 040145 51 PFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNK 90 (402)
Q Consensus 51 ~~~~~Lp~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~s~ 90 (402)
..|.+||||+++.|++.|+.+.+.++..|||||+.+....
T Consensus 96 v~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de 135 (419)
T KOG2120|consen 96 VSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDE 135 (419)
T ss_pred CCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccc
Confidence 3578999999999999999999999999999999998766
No 85
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.82 E-value=1.2 Score=39.02 Aligned_cols=185 Identities=15% Similarity=0.163 Sum_probs=104.6
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF 199 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~ 199 (402)
-+.++|+++..-++.+ +|.. .........++...|.|+..|-..-- =++||.++.-+..+.. ..-...
T Consensus 125 aI~R~dpkt~evt~f~-lp~~--~a~~nlet~vfD~~G~lWFt~q~G~y--------GrLdPa~~~i~vfpaP-qG~gpy 192 (353)
T COG4257 125 AIGRLDPKTLEVTRFP-LPLE--HADANLETAVFDPWGNLWFTGQIGAY--------GRLDPARNVISVFPAP-QGGGPY 192 (353)
T ss_pred eeEEecCcccceEEee-cccc--cCCCcccceeeCCCccEEEeeccccc--------eecCcccCceeeeccC-CCCCCc
Confidence 4567777776665543 2211 12255666777556788877643211 1678887765544322 222233
Q ss_pred EE-EEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcce--eEEEECCEEEEEcccccCCccCCcEEEEe
Q 040145 200 AS-GVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASY--DAAVLDGKLLVTEGWLWPFFVSPRGQVYD 276 (402)
Q Consensus 200 ~~-~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~--~~~~~~g~ly~~gG~~~~~~~~~~~~~yd 276 (402)
++ +.-++.+|+..=. -+-+-..|+.+..=+.++......... ..+--.|++.+.-- ....+..||
T Consensus 193 Gi~atpdGsvwyasla------gnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittw------g~g~l~rfd 260 (353)
T COG4257 193 GICATPDGSVWYASLA------GNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTW------GTGSLHRFD 260 (353)
T ss_pred ceEECCCCcEEEEecc------ccceEEcccccCCcceecCCCcccccccccccCccCcEEEecc------CCceeeEeC
Confidence 33 4457888877432 234566777776544443222111111 11222466666521 123789999
Q ss_pred CCCCCeeeccccccCCCceeE-EEECCEEEEEeccCCcEEEEEeCCCCceeecC
Q 040145 277 PSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELERMKLKVYDPSTDSWETIE 329 (402)
Q Consensus 277 ~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~ 329 (402)
+++..|.+-+-+-...+.... +--.|++++- ..+.+.+.+||+++.+.+.+.
T Consensus 261 Ps~~sW~eypLPgs~arpys~rVD~~grVW~s-ea~agai~rfdpeta~ftv~p 313 (353)
T COG4257 261 PSVTSWIEYPLPGSKARPYSMRVDRHGRVWLS-EADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred cccccceeeeCCCCCCCcceeeeccCCcEEee-ccccCceeecCcccceEEEec
Confidence 999999987753333343333 4445666653 334678999999999998875
No 86
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=95.80 E-value=0.77 Score=42.64 Aligned_cols=184 Identities=16% Similarity=0.184 Sum_probs=89.6
Q ss_pred eEEEEECCCCceeecCCCcccccceEEEE--ECCEEEEEcCCCCCCCCCCeeEEEcCC--CCcEEEcCCCCCCCcceeEE
Q 040145 175 LVLKYEMQKNRWTVMNKMITARSFFASGV--IGGMIYVAGGSSADLFELDSAEVLDPV--KGNWRTIASMGTNMASYDAA 250 (402)
Q Consensus 175 ~~~~~d~~t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~--t~~W~~~~~~~~~~~~~~~~ 250 (402)
.++.||..+++++.+......-...-++. -++.||+....... ...+..|+.. +++.+.+...+......+.+
T Consensus 16 ~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~---~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i 92 (345)
T PF10282_consen 16 YVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGD---SGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI 92 (345)
T ss_dssp EEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSST---TTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred EEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccC---CCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence 34456668888887664322211111222 35688888654301 3455555544 46788776665433333334
Q ss_pred EE--CCEEEEEcccccCCccCCcEEEEeCCCC-Ceeeccc--------cc---cCCCceeEEEE--CCE-EEEEeccCCc
Q 040145 251 VL--DGKLLVTEGWLWPFFVSPRGQVYDPSTD-NWESMAV--------GL---REGWTGSSVVV--YEH-LFVVSELERM 313 (402)
Q Consensus 251 ~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~-~W~~~~~--------~~---~~~~~~~~~~~--~~~-l~~~gg~~~~ 313 (402)
.+ +++..++..+. ...+.+|++..+ .-..... +- ....+.+.+.. +++ +|+. ..+.+
T Consensus 93 ~~~~~g~~l~vany~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~-dlG~D 166 (345)
T PF10282_consen 93 AVDPDGRFLYVANYG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP-DLGAD 166 (345)
T ss_dssp EECTTSSEEEEEETT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE-ETTTT
T ss_pred EEecCCCEEEEEEcc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE-ecCCC
Confidence 44 45433333322 236778877663 2222210 01 11222233333 444 5544 44567
Q ss_pred EEEEEeCCCCc--eeecCCCCCCccccCCeEEEE-eCCEEEEEecCceeeeEEEEeccc
Q 040145 314 KLKVYDPSTDS--WETIEGPPLPEQICKPFAVNA-CDCRVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 314 ~~~~yd~~~~~--W~~~~~~~~p~~~~~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~ 369 (402)
.|++|+.+.+. ........+|....-.|.+.. .+..+||+....+. ..++.+++
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~--v~v~~~~~ 223 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNT--VSVFDYDP 223 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTE--EEEEEEET
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCc--EEEEeecc
Confidence 88888887665 655333334432121223333 34578888765444 34555553
No 87
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.74 E-value=2.2 Score=41.69 Aligned_cols=113 Identities=12% Similarity=0.171 Sum_probs=63.5
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCc--eeecCCCcccc-----cceEEEEEC-CEEEEEcCCCCCCCCCCeeEEE
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVMNKMITAR-----SFFASGVIG-GMIYVAGGSSADLFELDSAEVL 227 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~r-----~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~y 227 (402)
++.||+.... ..++.+|..|++ |+.-...+... .....+..+ ++||+... ...+..+
T Consensus 61 ~g~vy~~~~~--------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-------~g~v~Al 125 (488)
T cd00216 61 DGDMYFTTSH--------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-------DGRLVAL 125 (488)
T ss_pred CCEEEEeCCC--------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-------CCeEEEE
Confidence 8889886532 378999999885 87633222100 111234445 78887543 3568999
Q ss_pred cCCCCc--EEEcCCCCC-CC--cceeEEEECCEEEEEcccccCC---ccCCcEEEEeCCCC--Ceee
Q 040145 228 DPVKGN--WRTIASMGT-NM--ASYDAAVLDGKLLVTEGWLWPF---FVSPRGQVYDPSTD--NWES 284 (402)
Q Consensus 228 d~~t~~--W~~~~~~~~-~~--~~~~~~~~~g~ly~~gG~~~~~---~~~~~~~~yd~~~~--~W~~ 284 (402)
|..|++ |+.-..... .. ...+.++.++.+|+ |...... .....++++|.+++ .|+.
T Consensus 126 D~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 126 DAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred ECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEe
Confidence 998775 876432221 11 11223455677665 3221110 11236899999876 4864
No 88
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.66 E-value=1.6 Score=39.45 Aligned_cols=218 Identities=13% Similarity=0.187 Sum_probs=91.6
Q ss_pred CCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecC-CCcccccceEEEEE-C
Q 040145 128 HYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMN-KMITARSFFASGVI-G 205 (402)
Q Consensus 128 ~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~-~~~~~r~~~~~~~~-~ 205 (402)
-.+|..+..-...+ ....+..+.. .++..|+.|.. + -++.-.-.-.+|++++ +.+.+-..+.+..+ +
T Consensus 46 G~tW~~~~~~~~~~--~~~~l~~I~f-~~~~g~ivG~~---g-----~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~ 114 (302)
T PF14870_consen 46 GKTWQPVSLDLDNP--FDYHLNSISF-DGNEGWIVGEP---G-----LLLHTTDGGKTWERVPLSSKLPGSPFGITALGD 114 (302)
T ss_dssp TSS-EE-----S-------EEEEEEE-ETTEEEEEEET---T-----EEEEESSTTSS-EE----TT-SS-EEEEEEEET
T ss_pred CccccccccCCCcc--ceeeEEEEEe-cCCceEEEcCC---c-----eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCC
Confidence 35698765322111 0123444444 36788888743 0 2222222344899976 22333334444444 5
Q ss_pred CEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEE-EECCEEEEEcccccCCccCCcEEEEeCCCCCeee
Q 040145 206 GMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAA-VLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES 284 (402)
Q Consensus 206 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~-~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~ 284 (402)
+.+++++.. ..++.=.=.-.+|+.+..-... ...... .-+|++++++... +-....|+....|+.
T Consensus 115 ~~~~l~~~~-------G~iy~T~DgG~tW~~~~~~~~g-s~~~~~r~~dG~~vavs~~G------~~~~s~~~G~~~w~~ 180 (302)
T PF14870_consen 115 GSAELAGDR-------GAIYRTTDGGKTWQAVVSETSG-SINDITRSSDGRYVAVSSRG------NFYSSWDPGQTTWQP 180 (302)
T ss_dssp TEEEEEETT---------EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EEEEETTS------SEEEEE-TT-SS-EE
T ss_pred CcEEEEcCC-------CcEEEeCCCCCCeeEcccCCcc-eeEeEEECCCCcEEEEECcc------cEEEEecCCCccceE
Confidence 567777642 3344333344579887432221 111222 2367766666432 234577888889998
Q ss_pred ccccccCCCceeEEEECCEEEEEeccCCcEEEEEe--CCCCceeecCCCCCCccccCC-eEEEE-eCCEEEEEecCceee
Q 040145 285 MAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYD--PSTDSWETIEGPPLPEQICKP-FAVNA-CDCRVYVVGRNLHVA 360 (402)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd--~~~~~W~~~~~~~~p~~~~~~-~~~~~-~~~~i~v~GG~~~~~ 360 (402)
.......+...+...-++.|++++- +..+..=+ -...+|.+... +.... ... ..++. .++.+++.||...
T Consensus 181 ~~r~~~~riq~~gf~~~~~lw~~~~--Gg~~~~s~~~~~~~~w~~~~~-~~~~~-~~~~ld~a~~~~~~~wa~gg~G~-- 254 (302)
T PF14870_consen 181 HNRNSSRRIQSMGFSPDGNLWMLAR--GGQIQFSDDPDDGETWSEPII-PIKTN-GYGILDLAYRPPNEIWAVGGSGT-- 254 (302)
T ss_dssp EE--SSS-EEEEEE-TTS-EEEEET--TTEEEEEE-TTEEEEE---B--TTSS---S-EEEEEESSSS-EEEEESTT---
T ss_pred EccCccceehhceecCCCCEEEEeC--CcEEEEccCCCCccccccccC-CcccC-ceeeEEEEecCCCCEEEEeCCcc--
Confidence 7753333222233445778888752 33555555 34567887331 23211 222 23333 4688999998643
Q ss_pred eEEEEecccccccCceeeeEEEEeC
Q 040145 361 VGHITRLSTSEKKWSFSVQWQVVDA 385 (402)
Q Consensus 361 ~~~v~~~~~~~~~~~~~~~W~~~~~ 385 (402)
+++-...-+ +|++.+.
T Consensus 255 ---l~~S~DgGk------tW~~~~~ 270 (302)
T PF14870_consen 255 ---LLVSTDGGK------TWQKDRV 270 (302)
T ss_dssp ---EEEESSTTS------S-EE-GG
T ss_pred ---EEEeCCCCc------cceECcc
Confidence 444333333 8888765
No 89
>PRK00178 tolB translocation protein TolB; Provisional
Probab=95.53 E-value=2.4 Score=40.66 Aligned_cols=183 Identities=10% Similarity=0.004 Sum_probs=95.8
Q ss_pred ceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccc
Q 040145 118 KIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITAR 196 (402)
Q Consensus 118 ~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r 196 (402)
...++++|..+++-..+...+.. ........++ .|++..... ...+++++|..++..+.+..-....
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~-------~~~~~~SpDG~~la~~~~~~-----g~~~Iy~~d~~~~~~~~lt~~~~~~ 289 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGL-------NGAPAWSPDGSKLAFVLSKD-----GNPEIYVMDLASRQLSRVTNHPAID 289 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCC-------cCCeEECCCCCEEEEEEccC-----CCceEEEEECCCCCeEEcccCCCCc
Confidence 34688889888877776544311 1112222244 555443221 1248999999999887765432211
Q ss_pred cceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECC-EEEEEcccccCCccCCcEEEE
Q 040145 197 SFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDG-KLLVTEGWLWPFFVSPRGQVY 275 (402)
Q Consensus 197 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g-~ly~~gG~~~~~~~~~~~~~y 275 (402)
.......-+..|++.....+ ...++.+|..++.++.+.... .........-+| .|++.....+ ...++.+
T Consensus 290 ~~~~~spDg~~i~f~s~~~g----~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~~----~~~l~~~ 360 (430)
T PRK00178 290 TEPFWGKDGRTLYFTSDRGG----KPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQDG----NFHVAAQ 360 (430)
T ss_pred CCeEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEEccCC----ceEEEEE
Confidence 11111112345666543222 357899999888887764211 111111222244 4555443221 2368999
Q ss_pred eCCCCCeeeccccccCCCceeEEEECCEEEEEeccC--CcEEEEEeCCCC
Q 040145 276 DPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELE--RMKLKVYDPSTD 323 (402)
Q Consensus 276 d~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~--~~~~~~yd~~~~ 323 (402)
|+.++..+.+... .. .......-+|+.+++.... ...++.++...+
T Consensus 361 dl~tg~~~~lt~~-~~-~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 361 DLQRGSVRILTDT-SL-DESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred ECCCCCEEEccCC-CC-CCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 9999888777542 11 1122334466766664432 235777777543
No 90
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.41 E-value=2.6 Score=40.23 Aligned_cols=249 Identities=14% Similarity=0.093 Sum_probs=124.0
Q ss_pred CCeEEEEEEe-CCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCC----CCCCceEEE
Q 040145 104 DPWLFVFAFH-KCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDV----DCPLDLVLK 178 (402)
Q Consensus 104 ~~~l~~~gg~-~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~----~~~~~~~~~ 178 (402)
++..++++-+ .++....+.++|..+++...-. +. . ..+..+....++..++....+... ...-..++.
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~--~----~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IE--N----PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EE--E----EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-cc--c----cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 4455555433 3455667888999888553311 11 0 112224443454555444443221 112557888
Q ss_pred EECCCCcee--ecCCCccccc-ceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCC-----cEEEcCCCCCCCcceeE
Q 040145 179 YEMQKNRWT--VMNKMITARS-FFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKG-----NWRTIASMGTNMASYDA 249 (402)
Q Consensus 179 ~d~~t~~W~--~~~~~~~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~-----~W~~~~~~~~~~~~~~~ 249 (402)
+...|..-. .+-.-+.... ...+.. -+++.+++.-.... . .+.++..|.... .|..+.+--. .....+
T Consensus 207 ~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~-~-~s~v~~~d~~~~~~~~~~~~~l~~~~~-~~~~~v 283 (414)
T PF02897_consen 207 HKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGT-S-ESEVYLLDLDDGGSPDAKPKLLSPRED-GVEYYV 283 (414)
T ss_dssp EETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSS-S-EEEEEEEECCCTTTSS-SEEEEEESSS-S-EEEE
T ss_pred EECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccc-c-CCeEEEEeccccCCCcCCcEEEeCCCC-ceEEEE
Confidence 888877544 2222222222 222222 24443333221111 1 367899999875 7887743222 122233
Q ss_pred EEECCEEEEEcccccCCccCCcEEEEeCCCCC---ee-eccccccCCCceeEEEECCEEEEEeccC-CcEEEEEeCC-CC
Q 040145 250 AVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN---WE-SMAVGLREGWTGSSVVVYEHLFVVSELE-RMKLKVYDPS-TD 323 (402)
Q Consensus 250 ~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~---W~-~~~~~~~~~~~~~~~~~~~~l~~~gg~~-~~~~~~yd~~-~~ 323 (402)
...++.+|+....+.+ ...+..+++.+.. |. .+.+.............+++|++..-.+ ...+.+||+. +.
T Consensus 284 ~~~~~~~yi~Tn~~a~---~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 284 DHHGDRLYILTNDDAP---NGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EEETTEEEEEE-TT-T---T-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred EccCCEEEEeeCCCCC---CcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCc
Confidence 3448899988764332 2378889988765 66 3333111112222346688888775443 4579999998 43
Q ss_pred ceeecCCCCCCccccCCeEEEE---eCCEEEE-EecCceeeeEEEEecccccc
Q 040145 324 SWETIEGPPLPEQICKPFAVNA---CDCRVYV-VGRNLHVAVGHITRLSTSEK 372 (402)
Q Consensus 324 ~W~~~~~~~~p~~~~~~~~~~~---~~~~i~v-~GG~~~~~~~~v~~~~~~~~ 372 (402)
.-..+ ++|.. ....... ..+.+++ +.+... -..++.||...+
T Consensus 361 ~~~~~---~~p~~--g~v~~~~~~~~~~~~~~~~ss~~~--P~~~y~~d~~t~ 406 (414)
T PF02897_consen 361 ESREI---PLPEA--GSVSGVSGDFDSDELRFSYSSFTT--PPTVYRYDLATG 406 (414)
T ss_dssp EEEEE---ESSSS--SEEEEEES-TT-SEEEEEEEETTE--EEEEEEEETTTT
T ss_pred EEeee---cCCcc--eEEeccCCCCCCCEEEEEEeCCCC--CCEEEEEECCCC
Confidence 33333 35431 1111111 2344544 444433 368999998776
No 91
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.33 E-value=2.1 Score=40.18 Aligned_cols=174 Identities=12% Similarity=0.122 Sum_probs=87.6
Q ss_pred ceeEEEeecCCCcEEe-CCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCc-eeecCCCccc
Q 040145 118 KIQWQVLDLTHYCWHT-IPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNR-WTVMNKMITA 195 (402)
Q Consensus 118 ~~~~~~~d~~~~~W~~-l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~-W~~~~~~~~~ 195 (402)
...+..|+..+..-.+ +..+. ....++.+-.+|+++.+|+. +..+.+||..+.. -+.+..-..|
T Consensus 47 S~rvqly~~~~~~~~k~~srFk-------~~v~s~~fR~DG~LlaaGD~-------sG~V~vfD~k~r~iLR~~~ah~ap 112 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVRKTFSRFK-------DVVYSVDFRSDGRLLAAGDE-------SGHVKVFDMKSRVILRQLYAHQAP 112 (487)
T ss_pred ccEEEEEecchhhhhhhHHhhc-------cceeEEEeecCCeEEEccCC-------cCcEEEeccccHHHHHHHhhccCc
Confidence 3457788877654332 22222 22334444458999999986 3379999954421 1111111111
Q ss_pred ccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcce---eEEEECCEEEEEcccccCCccCCcE
Q 040145 196 RSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASY---DAAVLDGKLLVTEGWLWPFFVSPRG 272 (402)
Q Consensus 196 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~---~~~~~~g~ly~~gG~~~~~~~~~~~ 272 (402)
-..--....++.+++.|+-+ ..+..+|..+..- ...+...-.+. +....+++|++.||+++ .+
T Consensus 113 v~~~~f~~~d~t~l~s~sDd------~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~~~~~hivvtGsYDg------~v 178 (487)
T KOG0310|consen 113 VHVTKFSPQDNTMLVSGSDD------KVVKYWDLSTAYV--QAELSGHTDYVRCGDISPANDHIVVTGSYDG------KV 178 (487)
T ss_pred eeEEEecccCCeEEEecCCC------ceEEEEEcCCcEE--EEEecCCcceeEeeccccCCCeEEEecCCCc------eE
Confidence 11122234577888888742 2334445544431 22222222211 12234788999999864 67
Q ss_pred EEEeCCCCCeeeccc-cccCCCceeEEEE-CCEEEEEeccCCcEEEEEeCCCC
Q 040145 273 QVYDPSTDNWESMAV-GLREGWTGSSVVV-YEHLFVVSELERMKLKVYDPSTD 323 (402)
Q Consensus 273 ~~yd~~~~~W~~~~~-~~~~~~~~~~~~~-~~~l~~~gg~~~~~~~~yd~~~~ 323 (402)
-.||..+.+ ..+-. ....+ ....+.+ +|.+++..| ++.+.++|..+.
T Consensus 179 rl~DtR~~~-~~v~elnhg~p-Ve~vl~lpsgs~iasAg--Gn~vkVWDl~~G 227 (487)
T KOG0310|consen 179 RLWDTRSLT-SRVVELNHGCP-VESVLALPSGSLIASAG--GNSVKVWDLTTG 227 (487)
T ss_pred EEEEeccCC-ceeEEecCCCc-eeeEEEcCCCCEEEEcC--CCeEEEEEecCC
Confidence 889987763 22221 11111 1112333 445554444 447888777643
No 92
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.29 E-value=3 Score=40.29 Aligned_cols=183 Identities=9% Similarity=-0.007 Sum_probs=93.6
Q ss_pred ceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccc
Q 040145 118 KIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITAR 196 (402)
Q Consensus 118 ~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r 196 (402)
..+++.+|..+++-..+...+.. .. ......++ .|++....+ ...+++++|..+++.+++..-....
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~------~~-~~~wSPDG~~La~~~~~~-----g~~~Iy~~dl~tg~~~~lt~~~~~~ 308 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGI------NG-APRFSPDGKKLALVLSKD-----GQPEIYVVDIATKALTRITRHRAID 308 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCC------cC-CeeECCCCCEEEEEEeCC-----CCeEEEEEECCCCCeEECccCCCCc
Confidence 35688889888776666544311 11 12222244 565554321 2358999999999888765432111
Q ss_pred cceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEe
Q 040145 197 SFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYD 276 (402)
Q Consensus 197 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd 276 (402)
.......-+..|++.....+ ...++.+|..+++++.+.. ...........-+|+.+++.+.... ...++.+|
T Consensus 309 ~~p~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~-~g~~~~~~~~SpDG~~l~~~~~~~g---~~~I~~~d 380 (448)
T PRK04792 309 TEPSWHPDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTF-EGEQNLGGSITPDGRSMIMVNRTNG---KFNIARQD 380 (448)
T ss_pred cceEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEEec-CCCCCcCeeECCCCCEEEEEEecCC---ceEEEEEE
Confidence 11111112335555543222 3578999999998887641 1111111122235544333332211 23688999
Q ss_pred CCCCCeeeccccccCCCceeEEEECCEEEEEeccC--CcEEEEEeCCC
Q 040145 277 PSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELE--RMKLKVYDPST 322 (402)
Q Consensus 277 ~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~--~~~~~~yd~~~ 322 (402)
+.++....+.... .. ......-+|+.+++.... ...++.+|.+.
T Consensus 381 l~~g~~~~lt~~~-~d-~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G 426 (448)
T PRK04792 381 LETGAMQVLTSTR-LD-ESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG 426 (448)
T ss_pred CCCCCeEEccCCC-CC-CCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 9998877665421 11 122333455544443222 23577777743
No 93
>PRK05137 tolB translocation protein TolB; Provisional
Probab=95.18 E-value=3.2 Score=39.94 Aligned_cols=146 Identities=10% Similarity=0.069 Sum_probs=77.8
Q ss_pred ceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEEC
Q 040145 174 DLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLD 253 (402)
Q Consensus 174 ~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~ 253 (402)
..++++|..+++.+.+...+..........-+.+|++....++ ...++++|..++.-+.+...+... ......-+
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~~~~~~-~~~~~spD 300 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTDSPAID-TSPSYSPD 300 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccCCCCcc-CceeEcCC
Confidence 5899999999988777654432222222222335555443322 457899999988877664433211 11122235
Q ss_pred CE-EEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEecc--CCcEEEEEeCCCCceeecC
Q 040145 254 GK-LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSEL--ERMKLKVYDPSTDSWETIE 329 (402)
Q Consensus 254 g~-ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~--~~~~~~~yd~~~~~W~~~~ 329 (402)
|+ |++.....+ ...++.+|..++..+.+... ..........-+|+.+++... +...++.+|+.+.....+.
T Consensus 301 G~~i~f~s~~~g----~~~Iy~~d~~g~~~~~lt~~-~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt 374 (435)
T PRK05137 301 GSQIVFESDRSG----SPQLYVMNADGSNPRRISFG-GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILT 374 (435)
T ss_pred CCEEEEEECCCC----CCeEEEEECCCCCeEEeecC-CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEecc
Confidence 54 444332211 24789999888777766531 111112222334544433222 1357899998776655554
No 94
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.13 E-value=0.76 Score=42.98 Aligned_cols=137 Identities=15% Similarity=0.124 Sum_probs=73.0
Q ss_pred eEEEEECCCCceee-cCCCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCc-EEEcCCCCCCCcceeEEE
Q 040145 175 LVLKYEMQKNRWTV-MNKMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGN-WRTIASMGTNMASYDAAV 251 (402)
Q Consensus 175 ~~~~~d~~t~~W~~-~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~~~~~~~~~ 251 (402)
.+.+|+..+..-.+ +.. ..+..+++.+ .+|+++++|+. ..-+.+||..+.. -+.+..-..+.....-..
T Consensus 49 rvqly~~~~~~~~k~~sr--Fk~~v~s~~fR~DG~LlaaGD~------sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~ 120 (487)
T KOG0310|consen 49 RVQLYSSVTRSVRKTFSR--FKDVVYSVDFRSDGRLLAAGDE------SGHVKVFDMKSRVILRQLYAHQAPVHVTKFSP 120 (487)
T ss_pred EEEEEecchhhhhhhHHh--hccceeEEEeecCCeEEEccCC------cCcEEEeccccHHHHHHHhhccCceeEEEecc
Confidence 67788877653222 111 1233344444 47999999986 5568899955521 011111111111111223
Q ss_pred ECCEEEEEcccccCCccCCcEEEEeCCCCCee-eccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCC-cee
Q 040145 252 LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWE-SMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTD-SWE 326 (402)
Q Consensus 252 ~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~-~W~ 326 (402)
.++.+++.|+-+ ..+..+|..+..-. ++.....--|.+...-.+++|++.||++ ..|..||..+. .|.
T Consensus 121 ~d~t~l~s~sDd------~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYD-g~vrl~DtR~~~~~v 190 (487)
T KOG0310|consen 121 QDNTMLVSGSDD------KVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYD-GKVRLWDTRSLTSRV 190 (487)
T ss_pred cCCeEEEecCCC------ceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCC-ceEEEEEeccCCcee
Confidence 478888888753 13444555554421 1111111223333345689999999995 47888999877 444
No 95
>PRK03629 tolB translocation protein TolB; Provisional
Probab=95.13 E-value=3.3 Score=39.79 Aligned_cols=170 Identities=10% Similarity=-0.004 Sum_probs=88.0
Q ss_pred CceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE
Q 040145 173 LDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL 252 (402)
Q Consensus 173 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~ 252 (402)
...++++|..+++-+.+...+..-.......-+.+|++.....+ ...++++|..++..+.+....... ......-
T Consensus 222 ~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~~~~~-~~~~wSP 296 (429)
T PRK03629 222 RSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGRSNN-TEPTWFP 296 (429)
T ss_pred CcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCCCCCc-CceEECC
Confidence 34799999988876666544322111111112335665543222 346899999988877764332211 1111222
Q ss_pred CCE-EEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccC--CcEEEEEeCCCCceeecC
Q 040145 253 DGK-LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELE--RMKLKVYDPSTDSWETIE 329 (402)
Q Consensus 253 ~g~-ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~--~~~~~~yd~~~~~W~~~~ 329 (402)
+|+ |++.....+ ...++.+|+.++.-..+... ..........-+|+.+++.+.. ...++.+|++++.+..+.
T Consensus 297 DG~~I~f~s~~~g----~~~Iy~~d~~~g~~~~lt~~-~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt 371 (429)
T PRK03629 297 DSQNLAYTSDQAG----RPQVYKVNINGGAPQRITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLT 371 (429)
T ss_pred CCCEEEEEeCCCC----CceEEEEECCCCCeEEeecC-CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeC
Confidence 555 444332211 23688889888766655431 1111112223355544443322 357899999999888776
Q ss_pred CCCCCccccCCeEEEEeCCEEEEEecCc
Q 040145 330 GPPLPEQICKPFAVNACDCRVYVVGRNL 357 (402)
Q Consensus 330 ~~~~p~~~~~~~~~~~~~~~i~v~GG~~ 357 (402)
.. . .........+|+.+++.+..
T Consensus 372 ~~--~---~~~~p~~SpDG~~i~~~s~~ 394 (429)
T PRK03629 372 DT--F---LDETPSIAPNGTMVIYSSSQ 394 (429)
T ss_pred CC--C---CCCCceECCCCCEEEEEEcC
Confidence 31 1 11122334677766665543
No 96
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.01 E-value=3.6 Score=39.59 Aligned_cols=181 Identities=13% Similarity=-0.006 Sum_probs=92.4
Q ss_pred CceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE
Q 040145 173 LDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL 252 (402)
Q Consensus 173 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~ 252 (402)
...++++|..+++-+.+...+..........-+.+|++....++ ...++++|..++.-+.+..-..... .....-
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~~~~~~-~~~~sp 301 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNHFGIDT-EPTWAP 301 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccCCCCcc-ceEECC
Confidence 45799999999887776554322111111112345655433222 3578999999887766543221111 112222
Q ss_pred CCE-EEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCE-EEEEeccC-CcEEEEEeCCCCceeecC
Q 040145 253 DGK-LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEH-LFVVSELE-RMKLKVYDPSTDSWETIE 329 (402)
Q Consensus 253 ~g~-ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-l~~~gg~~-~~~~~~yd~~~~~W~~~~ 329 (402)
+|+ |++.....+ ...++.+|..+++.+.+... ..........-+|+ |++..+.+ ...++++|+.+...+.+.
T Consensus 302 DG~~l~f~sd~~g----~~~iy~~dl~~g~~~~lt~~-g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt 376 (433)
T PRK04922 302 DGKSIYFTSDRGG----RPQIYRVAASGGSAERLTFQ-GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT 376 (433)
T ss_pred CCCEEEEEECCCC----CceEEEEECCCCCeEEeecC-CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECC
Confidence 554 444432221 23688999988887776531 11111122233444 44443322 347999999888877665
Q ss_pred CCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEeccc
Q 040145 330 GPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 330 ~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~ 369 (402)
. -.. .. .-....+|+.+++.... .....++.++.
T Consensus 377 ~--~~~--~~-~p~~spdG~~i~~~s~~-~g~~~L~~~~~ 410 (433)
T PRK04922 377 P--GSL--DE-SPSFAPNGSMVLYATRE-GGRGVLAAVST 410 (433)
T ss_pred C--CCC--CC-CceECCCCCEEEEEEec-CCceEEEEEEC
Confidence 2 111 11 12334466655544432 22345666665
No 97
>PRK00178 tolB translocation protein TolB; Provisional
Probab=94.84 E-value=3.9 Score=39.21 Aligned_cols=181 Identities=10% Similarity=0.008 Sum_probs=92.6
Q ss_pred CceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE
Q 040145 173 LDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL 252 (402)
Q Consensus 173 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~ 252 (402)
...++++|..+++-+.+......-.......-+.+|++....++ ...+++||..++..+.+...+..-.. ....-
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~~~~-~~~sp 296 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNHPAIDTE-PFWGK 296 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccCCCCcCC-eEECC
Confidence 34799999999887776544321111111111345554432222 35789999999988776543221111 11222
Q ss_pred CC-EEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECC-EEEEEeccC-CcEEEEEeCCCCceeecC
Q 040145 253 DG-KLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYE-HLFVVSELE-RMKLKVYDPSTDSWETIE 329 (402)
Q Consensus 253 ~g-~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~l~~~gg~~-~~~~~~yd~~~~~W~~~~ 329 (402)
+| .|++.....+ ...++.+|+.+++++.+... ..........-+| .|++....+ ...++.+|..+...+.+.
T Consensus 297 Dg~~i~f~s~~~g----~~~iy~~d~~~g~~~~lt~~-~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt 371 (430)
T PRK00178 297 DGRTLYFTSDRGG----KPQIYKVNVNGGRAERVTFV-GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILT 371 (430)
T ss_pred CCCEEEEEECCCC----CceEEEEECCCCCEEEeecC-CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEcc
Confidence 44 4655532221 23789999988888776531 1111111222244 444443222 347999999998887775
Q ss_pred CCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEeccc
Q 040145 330 GPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 330 ~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~ 369 (402)
..... .......+|+.+++..... ....++..+.
T Consensus 372 ~~~~~-----~~p~~spdg~~i~~~~~~~-g~~~l~~~~~ 405 (430)
T PRK00178 372 DTSLD-----ESPSVAPNGTMLIYATRQQ-GRGVLMLVSI 405 (430)
T ss_pred CCCCC-----CCceECCCCCEEEEEEecC-CceEEEEEEC
Confidence 32111 1123344666555543221 1233555543
No 98
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=94.79 E-value=1.5 Score=40.18 Aligned_cols=152 Identities=16% Similarity=0.207 Sum_probs=88.1
Q ss_pred CEEEEEeCccCCCCC--CC-ceEEEEECCCC-----ceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEc
Q 040145 157 GTLFVCGGMVSDVDC--PL-DLVLKYEMQKN-----RWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLD 228 (402)
Q Consensus 157 ~~i~v~GG~~~~~~~--~~-~~~~~~d~~t~-----~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd 228 (402)
...+++|-....++. .. ..+++|+.... +.+.+.....+-.-.+++.++++|.+..| +.+.+|+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~ 113 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG--------NKLYVYD 113 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET--------TEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec--------CEEEEEE
Confidence 456666644322211 23 77999999885 55555554455556677778999666665 4688888
Q ss_pred CCCCc-EEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE-CCEEEE
Q 040145 229 PVKGN-WRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV-YEHLFV 306 (402)
Q Consensus 229 ~~t~~-W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~l~~ 306 (402)
...+. +...+.+..+-......++++.|++---.. .-.++.|+.+..+-..++......+..++..+ ++..++
T Consensus 114 l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~-----sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i 188 (321)
T PF03178_consen 114 LDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMK-----SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTII 188 (321)
T ss_dssp EETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSS-----SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEE
T ss_pred ccCcccchhhheecceEEEEEEeccccEEEEEEccc-----CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEE
Confidence 88887 888877766666666777788766543221 12456778866677777653433333334455 665444
Q ss_pred EeccCC-cEEEEEeCC
Q 040145 307 VSELER-MKLKVYDPS 321 (402)
Q Consensus 307 ~gg~~~-~~~~~yd~~ 321 (402)
++...+ -.++.|++.
T Consensus 189 ~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 189 VGDKDGNLFVLRYNPE 204 (321)
T ss_dssp EEETTSEEEEEEE-SS
T ss_pred EEcCCCeEEEEEECCC
Confidence 443322 245666653
No 99
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=94.79 E-value=2.5 Score=36.75 Aligned_cols=145 Identities=12% Similarity=0.131 Sum_probs=68.6
Q ss_pred cCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccc-cceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCC
Q 040145 155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITAR-SFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKG 232 (402)
Q Consensus 155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 232 (402)
.++..+++++. ...+.+||..++.... .+.... ....+... ++.+++.++. ...+.+||..+.
T Consensus 61 ~~~~~l~~~~~-------~~~i~i~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~ 125 (289)
T cd00200 61 ADGTYLASGSS-------DKTIRLWDLETGECVR--TLTGHTSYVSSVAFSPDGRILSSSSR------DKTIKVWDVETG 125 (289)
T ss_pred CCCCEEEEEcC-------CCeEEEEEcCcccceE--EEeccCCcEEEEEEcCCCCEEEEecC------CCeEEEEECCCc
Confidence 34556666664 2378899998753211 111111 11222222 3466666653 356888998855
Q ss_pred cEEEcCCCCCCCcceeEE-EE-CCEEEEEcccccCCccCCcEEEEeCCCCCe-eeccccccCCCceeEEEECCEEEEEec
Q 040145 233 NWRTIASMGTNMASYDAA-VL-DGKLLVTEGWLWPFFVSPRGQVYDPSTDNW-ESMAVGLREGWTGSSVVVYEHLFVVSE 309 (402)
Q Consensus 233 ~W~~~~~~~~~~~~~~~~-~~-~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~~l~~~gg 309 (402)
.-... +.......... .. ++.+++.+..+ ..+..||..+.+- ..+.. ...........-++..+++++
T Consensus 126 ~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~ 196 (289)
T cd00200 126 KCLTT--LRGHTDWVNSVAFSPDGTFVASSSQD------GTIKLWDLRTGKCVATLTG-HTGEVNSVAFSPDGEKLLSSS 196 (289)
T ss_pred EEEEE--eccCCCcEEEEEEcCcCCEEEEEcCC------CcEEEEEccccccceeEec-CccccceEEECCCcCEEEEec
Confidence 42221 11111112222 22 34555555422 3688899875432 11211 111111111222444555555
Q ss_pred cCCcEEEEEeCCCCc
Q 040145 310 LERMKLKVYDPSTDS 324 (402)
Q Consensus 310 ~~~~~~~~yd~~~~~ 324 (402)
. ...+.+||..+..
T Consensus 197 ~-~~~i~i~d~~~~~ 210 (289)
T cd00200 197 S-DGTIKLWDLSTGK 210 (289)
T ss_pred C-CCcEEEEECCCCc
Confidence 4 5679999997643
No 100
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.69 E-value=2.4 Score=36.15 Aligned_cols=145 Identities=12% Similarity=0.060 Sum_probs=89.0
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECC--EEEEEcCCCCCCCCCCeeEEEcCCCCc
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGG--MIYVAGGSSADLFELDSAEVLDPVKGN 233 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~yd~~t~~ 233 (402)
++.=|..||.+ ..+++||..|++--+- +...-..-..+.+++ .+.+.|+. -.++.++|-.+++
T Consensus 70 Dnskf~s~GgD-------k~v~vwDV~TGkv~Rr--~rgH~aqVNtV~fNeesSVv~Sgsf------D~s~r~wDCRS~s 134 (307)
T KOG0316|consen 70 DNSKFASCGGD-------KAVQVWDVNTGKVDRR--FRGHLAQVNTVRFNEESSVVASGSF------DSSVRLWDCRSRS 134 (307)
T ss_pred cccccccCCCC-------ceEEEEEcccCeeeee--cccccceeeEEEecCcceEEEeccc------cceeEEEEcccCC
Confidence 55555555542 2799999999863221 111111122333443 56667776 4568889999988
Q ss_pred EEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCc
Q 040145 234 WRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERM 313 (402)
Q Consensus 234 W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~ 313 (402)
-+.+.-+...+.+..++.+.+...+.|..++ .+-.||+..++-. ...+..+-......-++...++|.. ..
T Consensus 135 ~ePiQildea~D~V~Si~v~~heIvaGS~DG------tvRtydiR~G~l~--sDy~g~pit~vs~s~d~nc~La~~l-~s 205 (307)
T KOG0316|consen 135 FEPIQILDEAKDGVSSIDVAEHEIVAGSVDG------TVRTYDIRKGTLS--SDYFGHPITSVSFSKDGNCSLASSL-DS 205 (307)
T ss_pred CCccchhhhhcCceeEEEecccEEEeeccCC------cEEEEEeecceee--hhhcCCcceeEEecCCCCEEEEeec-cc
Confidence 8888888888888889989998888777643 5778998776521 1222222222222335555555544 44
Q ss_pred EEEEEeCCCCc
Q 040145 314 KLKVYDPSTDS 324 (402)
Q Consensus 314 ~~~~yd~~~~~ 324 (402)
.+..+|.++.+
T Consensus 206 tlrLlDk~tGk 216 (307)
T KOG0316|consen 206 TLRLLDKETGK 216 (307)
T ss_pred eeeecccchhH
Confidence 67777887764
No 101
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=94.63 E-value=7.9 Score=41.78 Aligned_cols=156 Identities=15% Similarity=0.182 Sum_probs=86.6
Q ss_pred eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCC----------c---ccccceEEEEE--CCEEEEEcC
Q 040145 149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKM----------I---TARSFFASGVI--GGMIYVAGG 213 (402)
Q Consensus 149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~----------~---~~r~~~~~~~~--~~~iyv~GG 213 (402)
+.+....++.||+.... .+.+++||+.++.......- . .-....++++. ++.||+...
T Consensus 687 gVa~dp~~g~LyVad~~-------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs 759 (1057)
T PLN02919 687 DVCFEPVNEKVYIAMAG-------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS 759 (1057)
T ss_pred EEEEecCCCeEEEEECC-------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC
Confidence 33333236789987543 34799999988765432110 0 00112233333 345898865
Q ss_pred CCCCCCCCCeeEEEcCCCCcEEEcC--C--CCCC---------------CcceeEEE--ECCEEEEEcccccCCccCCcE
Q 040145 214 SSADLFELDSAEVLDPVKGNWRTIA--S--MGTN---------------MASYDAAV--LDGKLLVTEGWLWPFFVSPRG 272 (402)
Q Consensus 214 ~~~~~~~~~~~~~yd~~t~~W~~~~--~--~~~~---------------~~~~~~~~--~~g~ly~~gG~~~~~~~~~~~ 272 (402)
. .+.+.+||+.++..+.+. . .+.. ......+. -+|.||+.... .+.+
T Consensus 760 ~------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~------N~rI 827 (1057)
T PLN02919 760 E------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY------NHKI 827 (1057)
T ss_pred C------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC------CCEE
Confidence 4 567899999876533221 0 0000 01112222 36789987654 2479
Q ss_pred EEEeCCCCCeeeccccc----------cCCC---ceeEEEECCEEEEEeccCCcEEEEEeCCCCc
Q 040145 273 QVYDPSTDNWESMAVGL----------REGW---TGSSVVVYEHLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 273 ~~yd~~~~~W~~~~~~~----------~~~~---~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
.+||+.++....+...- .... .+.++.-+|++|+.... .+.|.++|..+.+
T Consensus 828 rviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~-Nn~Irvid~~~~~ 891 (1057)
T PLN02919 828 KKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN-NSLIRYLDLNKGE 891 (1057)
T ss_pred EEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC-CCEEEEEECCCCc
Confidence 99999888776553200 0001 11122347889887554 6789999998865
No 102
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=94.60 E-value=3.6 Score=37.76 Aligned_cols=258 Identities=8% Similarity=0.029 Sum_probs=110.3
Q ss_pred CCeEEEEEEeCCCCceeEEEeecC-CCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLT-HYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQ 182 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~-~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~ 182 (402)
+..||+.... ...+..|+.. ..++..+...+.+. .....+....+..+|+.... .+.+.+||..
T Consensus 46 ~~~lyv~~~~----~~~i~~~~~~~~g~l~~~~~~~~~~----~p~~i~~~~~g~~l~v~~~~-------~~~v~v~~~~ 110 (330)
T PRK11028 46 KRHLYVGVRP----EFRVLSYRIADDGALTFAAESPLPG----SPTHISTDHQGRFLFSASYN-------ANCVSVSPLD 110 (330)
T ss_pred CCEEEEEECC----CCcEEEEEECCCCceEEeeeecCCC----CceEEEECCCCCEEEEEEcC-------CCeEEEEEEC
Confidence 5567775432 1235556554 44565444333211 11222322224456665422 3478888876
Q ss_pred CCc--eeecCCCcccccceEEEEE-C-CEEEEEcCCCCCCCCCCeeEEEcCCCCc-EEEcC----CCCCCCcceeEEEE-
Q 040145 183 KNR--WTVMNKMITARSFFASGVI-G-GMIYVAGGSSADLFELDSAEVLDPVKGN-WRTIA----SMGTNMASYDAAVL- 252 (402)
Q Consensus 183 t~~--W~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~----~~~~~~~~~~~~~~- 252 (402)
++. .+.+..++.....|.++.. + ..+|+..-. .+.+.+||..++. ..... ..+....-...+..
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~------~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~p 184 (330)
T PRK11028 111 KDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK------EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHP 184 (330)
T ss_pred CCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC------CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECC
Confidence 431 1222222222233444443 3 366665532 4678999987632 21100 11111111122222
Q ss_pred CC-EEEEEcccccCCccCCcEEEEeCC--CCCeeeccc--ccc----CCCceeEEE--ECCE-EEEEeccCCcEEEEEeC
Q 040145 253 DG-KLLVTEGWLWPFFVSPRGQVYDPS--TDNWESMAV--GLR----EGWTGSSVV--VYEH-LFVVSELERMKLKVYDP 320 (402)
Q Consensus 253 ~g-~ly~~gG~~~~~~~~~~~~~yd~~--~~~W~~~~~--~~~----~~~~~~~~~--~~~~-l~~~gg~~~~~~~~yd~ 320 (402)
+| .+|+.... .+.+.+||.. +++.+.+.. ..| ..+....+. -+++ +|+. ....+.+.+|+.
T Consensus 185 dg~~lyv~~~~------~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~-~~~~~~I~v~~i 257 (330)
T PRK11028 185 NQQYAYCVNEL------NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC-DRTASLISVFSV 257 (330)
T ss_pred CCCEEEEEecC------CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe-cCCCCeEEEEEE
Confidence 44 46665432 2467777775 445543321 111 122222222 2444 6654 333456666665
Q ss_pred --CCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEecccccccCceeeeEEEEeCCCCCCCcccccee
Q 040145 321 --STDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVVDAPDNFSDLTPSSSQ 398 (402)
Q Consensus 321 --~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 398 (402)
++..++.+...+.... .....+...+..||+.....+ ...++..|.... .++.+..-. .+..|.+++
T Consensus 258 ~~~~~~~~~~~~~~~~~~-p~~~~~~~dg~~l~va~~~~~--~v~v~~~~~~~g------~l~~~~~~~--~g~~P~~~~ 326 (330)
T PRK11028 258 SEDGSVLSFEGHQPTETQ-PRGFNIDHSGKYLIAAGQKSH--HISVYEIDGETG------LLTELGRYA--VGQGPMWVS 326 (330)
T ss_pred eCCCCeEEEeEEEecccc-CCceEECCCCCEEEEEEccCC--cEEEEEEcCCCC------cEEEccccc--cCCCceEEE
Confidence 3445555543222111 112222233446666554332 234444443332 333443211 244566666
Q ss_pred EE
Q 040145 399 VL 400 (402)
Q Consensus 399 ~~ 400 (402)
+|
T Consensus 327 ~~ 328 (330)
T PRK11028 327 VL 328 (330)
T ss_pred EE
Confidence 54
No 103
>PRK13684 Ycf48-like protein; Provisional
Probab=94.58 E-value=3.8 Score=37.86 Aligned_cols=169 Identities=12% Similarity=0.151 Sum_probs=83.5
Q ss_pred eEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEE-EcCCCCcEEEcCCCCCCCcceeEEE-E
Q 040145 175 LVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEV-LDPVKGNWRTIASMGTNMASYDAAV-L 252 (402)
Q Consensus 175 ~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~-yd~~t~~W~~~~~~~~~~~~~~~~~-~ 252 (402)
.+++=+-.-.+|+.+...... ..+.+....+..|++.|..+ .++. .|....+|+.+.. +..+.....+. -
T Consensus 153 ~i~~S~DgG~tW~~~~~~~~g-~~~~i~~~~~g~~v~~g~~G------~i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~ 224 (334)
T PRK13684 153 AIYRTTDGGKNWEALVEDAAG-VVRNLRRSPDGKYVAVSSRG------NFYSTWEPGQTAWTPHQR-NSSRRLQSMGFQP 224 (334)
T ss_pred eEEEECCCCCCceeCcCCCcc-eEEEEEECCCCeEEEEeCCc------eEEEEcCCCCCeEEEeeC-CCcccceeeeEcC
Confidence 344444444589987643322 23344444444444444321 2222 2444467988754 33333333333 3
Q ss_pred CCEEEEEcccccCCccCCcEEEEe--CCCCCeeeccccccCCCce-eEE--EECCEEEEEeccCCcEEEEEeCCCCceee
Q 040145 253 DGKLLVTEGWLWPFFVSPRGQVYD--PSTDNWESMAVGLREGWTG-SSV--VVYEHLFVVSELERMKLKVYDPSTDSWET 327 (402)
Q Consensus 253 ~g~ly~~gG~~~~~~~~~~~~~yd--~~~~~W~~~~~~~~~~~~~-~~~--~~~~~l~~~gg~~~~~~~~yd~~~~~W~~ 327 (402)
++.++++|.. ....+. -.-.+|+.+..+....... ..+ .-++.++++|.. + .++.-.....+|+.
T Consensus 225 ~g~~~~vg~~--------G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~-G-~v~~S~d~G~tW~~ 294 (334)
T PRK13684 225 DGNLWMLARG--------GQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGN-G-TLLVSKDGGKTWEK 294 (334)
T ss_pred CCCEEEEecC--------CEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCC-C-eEEEeCCCCCCCeE
Confidence 6788887653 223342 2335899765422211111 222 226788887664 2 34433444578999
Q ss_pred cCC-CCCCccccCCeEEE-EeCCEEEEEecCceeeeEEEEeccc
Q 040145 328 IEG-PPLPEQICKPFAVN-ACDCRVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 328 ~~~-~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~~~~~v~~~~~ 369 (402)
+.. ..++ .....++ ..++++|++|.. +.+..+++
T Consensus 295 ~~~~~~~~---~~~~~~~~~~~~~~~~~G~~-----G~il~~~~ 330 (334)
T PRK13684 295 DPVGEEVP---SNFYKIVFLDPEKGFVLGQR-----GVLLRYVG 330 (334)
T ss_pred CCcCCCCC---cceEEEEEeCCCceEEECCC-----ceEEEecC
Confidence 752 1233 2233444 457788888763 33555544
No 104
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=94.57 E-value=0.52 Score=36.70 Aligned_cols=71 Identities=13% Similarity=0.076 Sum_probs=52.1
Q ss_pred EEECCEEEEEecc---CCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCcee--eeEEEEecc
Q 040145 298 VVVYEHLFVVSEL---ERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHV--AVGHITRLS 368 (402)
Q Consensus 298 ~~~~~~l~~~gg~---~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~--~~~~v~~~~ 368 (402)
+.+||.+|-.+.. ....|..||..+.+|+.+.....+........++.++|+|.++.-.... ..-++|+++
T Consensus 2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLe 77 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLE 77 (129)
T ss_pred EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEee
Confidence 4689999988664 2578999999999999987310123334556788899999998765533 468899996
No 105
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=94.53 E-value=2.9 Score=36.33 Aligned_cols=174 Identities=12% Similarity=0.139 Sum_probs=78.4
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCceee-cCCCcccccceEEEEEC-CEEEEEcCCCCCCCCCCeeEEEcCCCCc
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTV-MNKMITARSFFASGVIG-GMIYVAGGSSADLFELDSAEVLDPVKGN 233 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~-~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 233 (402)
++.+++.++. ...+.+||..+++-.. +.. ....-..+.... +.+++.|+. ...+.+||..+..
T Consensus 104 ~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~------~~~i~i~d~~~~~ 168 (289)
T cd00200 104 DGRILSSSSR-------DKTIKVWDVETGKCLTTLRG--HTDWVNSVAFSPDGTFVASSSQ------DGTIKLWDLRTGK 168 (289)
T ss_pred CCCEEEEecC-------CCeEEEEECCCcEEEEEecc--CCCcEEEEEEcCcCCEEEEEcC------CCcEEEEEccccc
Confidence 4566666653 2378899998654222 221 111122233333 455554442 3457889887543
Q ss_pred EEEcCCCCCCCcceeEE-EE-CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE-CCEEEEEecc
Q 040145 234 WRTIASMGTNMASYDAA-VL-DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV-YEHLFVVSEL 310 (402)
Q Consensus 234 W~~~~~~~~~~~~~~~~-~~-~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~l~~~gg~ 310 (402)
- +..+.......... .. ++..+++++.+ ..+..||..+.+-...-..... .....+.. ++.+++.++
T Consensus 169 ~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~- 238 (289)
T cd00200 169 C--VATLTGHTGEVNSVAFSPDGEKLLSSSSD------GTIKLWDLSTGKCLGTLRGHEN-GVNSVAFSPDGYLLASGS- 238 (289)
T ss_pred c--ceeEecCccccceEEECCCcCEEEEecCC------CcEEEEECCCCceecchhhcCC-ceEEEEEcCCCcEEEEEc-
Confidence 1 11111111111122 22 44455555532 3688999876443222111111 11111222 345555544
Q ss_pred CCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEe-CCEEEEEecCce
Q 040145 311 ERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNAC-DCRVYVVGRNLH 358 (402)
Q Consensus 311 ~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~-~~~i~v~GG~~~ 358 (402)
....+..||..+.. .+.. ++.......++... ++.+++.++.++
T Consensus 239 ~~~~i~i~~~~~~~--~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~ 283 (289)
T cd00200 239 EDGTIRVWDLRTGE--CVQT--LSGHTNSVTSLAWSPDGKRLASGSADG 283 (289)
T ss_pred CCCcEEEEEcCCce--eEEE--ccccCCcEEEEEECCCCCEEEEecCCC
Confidence 35578899987543 2221 11111112233333 446777777544
No 106
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.51 E-value=1.3 Score=38.76 Aligned_cols=109 Identities=19% Similarity=0.176 Sum_probs=71.9
Q ss_pred EEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCC
Q 040145 200 ASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPS 278 (402)
Q Consensus 200 ~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~ 278 (402)
+... .++.+|.--|.-+ .+.+..||+.|++-....++|..-++-+.+.++++||.+-=. ....++||..
T Consensus 49 GL~~~~~g~LyESTG~yG----~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk------~~~~f~yd~~ 118 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYG----QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK------EGTGFVYDPN 118 (264)
T ss_dssp EEEEEETTEEEEEECSTT----EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS------SSEEEEEETT
T ss_pred cEEecCCCEEEEeCCCCC----cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec------CCeEEEEccc
Confidence 4555 5788988877644 577999999999877777788888888999999999998543 3478999997
Q ss_pred CCCeeeccccccCCCceeE-EEECCEEEEEeccCCcEEEEEeCCCC
Q 040145 279 TDNWESMAVGLREGWTGSS-VVVYEHLFVVSELERMKLKVYDPSTD 323 (402)
Q Consensus 279 ~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~~~~~~~yd~~~~ 323 (402)
+ .+.+.. .+-...+-. +.-+.+|++-.| +..++.+||++-
T Consensus 119 t--l~~~~~-~~y~~EGWGLt~dg~~Li~SDG--S~~L~~~dP~~f 159 (264)
T PF05096_consen 119 T--LKKIGT-FPYPGEGWGLTSDGKRLIMSDG--SSRLYFLDPETF 159 (264)
T ss_dssp T--TEEEEE-EE-SSS--EEEECSSCEEEE-S--SSEEEEE-TTT-
T ss_pred c--ceEEEE-EecCCcceEEEcCCCEEEEECC--ccceEEECCccc
Confidence 5 444443 222223334 344566666666 458999999863
No 107
>PRK05137 tolB translocation protein TolB; Provisional
Probab=94.38 E-value=5.1 Score=38.54 Aligned_cols=188 Identities=13% Similarity=0.037 Sum_probs=95.1
Q ss_pred eeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccccc
Q 040145 119 IQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARS 197 (402)
Q Consensus 119 ~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~ 197 (402)
..++++|+.++....+...+... . ......+| .|++....+ ...+++++|..++..+++..-+....
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~------~-~~~~SPDG~~la~~~~~~-----g~~~Iy~~d~~~~~~~~Lt~~~~~~~ 293 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMT------F-APRFSPDGRKVVMSLSQG-----GNTDIYTMDLRSGTTTRLTDSPAIDT 293 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcc------c-CcEECCCCCEEEEEEecC-----CCceEEEEECCCCceEEccCCCCccC
Confidence 56888898888777665444211 1 11222244 455443321 23589999999988777654332111
Q ss_pred ceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCE-EEEEcccccCCccCCcEEEEe
Q 040145 198 FFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGK-LLVTEGWLWPFFVSPRGQVYD 276 (402)
Q Consensus 198 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~-ly~~gG~~~~~~~~~~~~~yd 276 (402)
......-+..|++.....+ ...++++|..++..+.+..... ........-+|+ |++..... . ...++.+|
T Consensus 294 ~~~~spDG~~i~f~s~~~g----~~~Iy~~d~~g~~~~~lt~~~~-~~~~~~~SpdG~~ia~~~~~~-~---~~~i~~~d 364 (435)
T PRK05137 294 SPSYSPDGSQIVFESDRSG----SPQLYVMNADGSNPRRISFGGG-RYSTPVWSPRGDLIAFTKQGG-G---QFSIGVMK 364 (435)
T ss_pred ceeEcCCCCEEEEEECCCC----CCeEEEEECCCCCeEEeecCCC-cccCeEECCCCCEEEEEEcCC-C---ceEEEEEE
Confidence 1111112334554432221 3578999988877766643211 111112223554 44433211 1 13688899
Q ss_pred CCCCCeeeccccccCCCceeEEEECCEEEEEeccC--C---cEEEEEeCCCCceeecC
Q 040145 277 PSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELE--R---MKLKVYDPSTDSWETIE 329 (402)
Q Consensus 277 ~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~--~---~~~~~yd~~~~~W~~~~ 329 (402)
+.++....+.... ........-+|+.+++.... . ..++.+|.....-..+.
T Consensus 365 ~~~~~~~~lt~~~--~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 365 PDGSGERILTSGF--LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred CCCCceEeccCCC--CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 8776655554311 11222233356655453321 1 47888888776555543
No 108
>PRK04043 tolB translocation protein TolB; Provisional
Probab=94.36 E-value=5 Score=38.36 Aligned_cols=176 Identities=12% Similarity=0.085 Sum_probs=95.1
Q ss_pred ceEEEEECCCCceeecCCCcccccceEEEEECC-EEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE
Q 040145 174 DLVLKYEMQKNRWTVMNKMITARSFFASGVIGG-MIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL 252 (402)
Q Consensus 174 ~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~ 252 (402)
.++|++|..+++=+.+...+....... ..-++ +|++.-...+ ...++++|..++.++.+...+..-. .....-
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~~~~~-~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT~~~~~d~-~p~~SP 286 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGMLVVSD-VSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQITNYPGIDV-NGNFVE 286 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcEEeeE-ECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEcccCCCccC-ccEECC
Confidence 489999998887666554221111111 12233 5555443322 4679999999999988855443111 112222
Q ss_pred CC-EEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccC--------CcEEEEEeCCCC
Q 040145 253 DG-KLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELE--------RMKLKVYDPSTD 323 (402)
Q Consensus 253 ~g-~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~--------~~~~~~yd~~~~ 323 (402)
+| +||+.....+ ...++.+|+.+++.+.+... .. ......-+|+.+++-... ...++.+|+++.
T Consensus 287 DG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g 359 (419)
T PRK04043 287 DDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD 359 (419)
T ss_pred CCCEEEEEECCCC----CceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence 45 5777654321 24799999999888776531 11 112233345433332221 258999999999
Q ss_pred ceeecCCCCCCccccCCeEEEEeCCE-EEEEecCceeeeEEEEeccc
Q 040145 324 SWETIEGPPLPEQICKPFAVNACDCR-VYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 324 ~W~~~~~~~~p~~~~~~~~~~~~~~~-i~v~GG~~~~~~~~v~~~~~ 369 (402)
.++.+... . ....-....||+ |+..... .....++.++.
T Consensus 360 ~~~~LT~~--~---~~~~p~~SPDG~~I~f~~~~--~~~~~L~~~~l 399 (419)
T PRK04043 360 YIRRLTAN--G---VNQFPRFSSDGGSIMFIKYL--GNQSALGIIRL 399 (419)
T ss_pred CeEECCCC--C---CcCCeEECCCCCEEEEEEcc--CCcEEEEEEec
Confidence 88887632 1 122233345555 5444432 22344555554
No 109
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=94.29 E-value=4 Score=36.97 Aligned_cols=248 Identities=15% Similarity=0.127 Sum_probs=121.2
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK 183 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t 183 (402)
+..||++...........+.+|+..++-+.+.....+. ...+.+++..++..++...+ ....+-+|-..+
T Consensus 51 ~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g----~~p~yvsvd~~g~~vf~AnY------~~g~v~v~p~~~ 120 (346)
T COG2706 51 QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPG----SPPCYVSVDEDGRFVFVANY------HSGSVSVYPLQA 120 (346)
T ss_pred CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCC----CCCeEEEECCCCCEEEEEEc------cCceEEEEEccc
Confidence 45789887765566777888999888887776554332 11244444345544444333 234566666544
Q ss_pred C-c-eee------cCCCccccc----ceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCC-CCCcc--e
Q 040145 184 N-R-WTV------MNKMITARS----FFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMG-TNMAS--Y 247 (402)
Q Consensus 184 ~-~-W~~------~~~~~~~r~----~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~-~~~~~--~ 247 (402)
+ . |.. ..+-|.+|- .|.+.. -++++.+.--. ....+.+|+...+.-+...... .+..+ |
T Consensus 121 dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL-----G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH 195 (346)
T COG2706 121 DGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL-----GTDRIFLYDLDDGKLTPADPAEVKPGAGPRH 195 (346)
T ss_pred CCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec-----CCceEEEEEcccCccccccccccCCCCCcce
Confidence 2 2 221 222333441 222222 23433333211 1567888988876654432211 22222 2
Q ss_pred eEEEECCE-EEEEcccccCCccCCcEEEEeCCCCCeeeccc--cccCCCce----eE--EEECCEEEEEeccCCcEEEE-
Q 040145 248 DAAVLDGK-LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV--GLREGWTG----SS--VVVYEHLFVVSELERMKLKV- 317 (402)
Q Consensus 248 ~~~~~~g~-ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~--~~~~~~~~----~~--~~~~~~l~~~gg~~~~~~~~- 317 (402)
...--|++ .|++.-.++ .-.++.||...++.+++.. .+|....+ +. +.-+|+.+.+--...+.|.+
T Consensus 196 i~FHpn~k~aY~v~EL~s----tV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f 271 (346)
T COG2706 196 IVFHPNGKYAYLVNELNS----TVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF 271 (346)
T ss_pred EEEcCCCcEEEEEeccCC----EEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 22222665 588766532 1256778888788887753 24443322 12 23366644443222334444
Q ss_pred -EeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEecccccc
Q 040145 318 -YDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEK 372 (402)
Q Consensus 318 -yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~ 372 (402)
.|+.+..-..+...+.-...-+.|.+.- +++++|+-+-.+.. ..|+..|+.+.
T Consensus 272 ~V~~~~g~L~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~-i~vf~~d~~TG 325 (346)
T COG2706 272 SVDPDGGKLELVGITPTEGQFPRDFNINP-SGRFLIAANQKSDN-ITVFERDKETG 325 (346)
T ss_pred EEcCCCCEEEEEEEeccCCcCCccceeCC-CCCEEEEEccCCCc-EEEEEEcCCCc
Confidence 4666665444432111111112344444 44445544433332 55666666544
No 110
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=94.29 E-value=3.5 Score=36.23 Aligned_cols=182 Identities=16% Similarity=0.146 Sum_probs=104.8
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCC-----CceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCC
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQK-----NRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPV 230 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t-----~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~ 230 (402)
.+++|++.+..+ +.++.|.-.+ +...+.-.+|.+-.+.+.++.+|.+|.--.. ...+..||..
T Consensus 30 ~~~iy~~~~~~~------~~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~~------s~~IvkydL~ 97 (250)
T PF02191_consen 30 SEKIYVTSGFSG------NTVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKYN------SRNIVKYDLT 97 (250)
T ss_pred CCCEEEECccCC------CEEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEecC------CceEEEEECc
Confidence 678999887632 2566664432 2333334566666777888899988877553 7889999999
Q ss_pred CCcEEEcCCCCCCCcc------------eeEEEECCEEEEEcccccCCccCCcEEEEeCCCC----CeeeccccccCCCc
Q 040145 231 KGNWRTIASMGTNMAS------------YDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTD----NWESMAVGLREGWT 294 (402)
Q Consensus 231 t~~W~~~~~~~~~~~~------------~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~----~W~~~~~~~~~~~~ 294 (402)
++.-..-..+|.+... ...++=++-|.++-...+... .-.+-..|+.+- +|..- .+....
T Consensus 98 t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g-~ivvskld~~tL~v~~tw~T~---~~k~~~ 173 (250)
T PF02191_consen 98 TRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG-NIVVSKLDPETLSVEQTWNTS---YPKRSA 173 (250)
T ss_pred CCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC-cEEEEeeCcccCceEEEEEec---cCchhh
Confidence 9875422223322211 112232334555433221111 114556677643 56532 344444
Q ss_pred eeEEEECCEEEEEeccC---CcEEEEEeCCCCceeecCCCCCCccccCCeEEEEe---CCEEEEEec
Q 040145 295 GSSVVVYEHLFVVSELE---RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNAC---DCRVYVVGR 355 (402)
Q Consensus 295 ~~~~~~~~~l~~~gg~~---~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~---~~~i~v~GG 355 (402)
+-+.++-|.||++.... ....+.||..+++=..+. ++.+.. ....+++.+ +.+||+.-.
T Consensus 174 ~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~-i~f~~~-~~~~~~l~YNP~dk~LY~wd~ 238 (250)
T PF02191_consen 174 GNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVS-IPFPNP-YGNISMLSYNPRDKKLYAWDN 238 (250)
T ss_pred cceeeEeeEEEEEEECCCCCcEEEEEEECCCCceecee-eeeccc-cCceEeeeECCCCCeEEEEEC
Confidence 44557789999997665 456789999988655443 344432 223355543 677888765
No 111
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=94.25 E-value=3.1 Score=36.00 Aligned_cols=162 Identities=13% Similarity=0.106 Sum_probs=75.6
Q ss_pred CceEEEEccCCEEEEEeCccCCCCCCCceEEEEE---CCCCceee--cCCCcc-------cccceEEEEECCEEEEEcCC
Q 040145 147 GFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYE---MQKNRWTV--MNKMIT-------ARSFFASGVIGGMIYVAGGS 214 (402)
Q Consensus 147 ~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d---~~t~~W~~--~~~~~~-------~r~~~~~~~~~~~iyv~GG~ 214 (402)
.+...++ +++||..--.-.-....+...+.|+ ...+.|+. ++..+. .-.-|+.+.+++.-|.+|-.
T Consensus 77 CmSMGv~--~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyH 154 (367)
T PF12217_consen 77 CMSMGVV--GNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYH 154 (367)
T ss_dssp -B-EEEE--TTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEE
T ss_pred eeeeeee--cceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEec
Confidence 3444455 8888876422111112344555565 34567865 444443 24457888888888888865
Q ss_pred CCCCCCCCeeEEEcCCC-----CcE-EEcC-CCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccc
Q 040145 215 SADLFELDSAEVLDPVK-----GNW-RTIA-SMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV 287 (402)
Q Consensus 215 ~~~~~~~~~~~~yd~~t-----~~W-~~~~-~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~ 287 (402)
.+...+..--..|-+.. ..- +.++ .........+.-.++|+||+.--...+...-..+..-+.....|+.+.-
T Consensus 155 nGD~sPRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrf 234 (367)
T PF12217_consen 155 NGDVSPRELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRF 234 (367)
T ss_dssp E-SSSS-EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-
T ss_pred cCCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccc
Confidence 44433222223332211 111 2222 2222223344556799999985443333333466777777788998874
Q ss_pred cccCCCceeE-EEECCEEEEEecc
Q 040145 288 GLREGWTGSS-VVVYEHLFVVSEL 310 (402)
Q Consensus 288 ~~~~~~~~~~-~~~~~~l~~~gg~ 310 (402)
+-........ +..++.||+||..
T Consensus 235 p~nvHhtnlPFakvgD~l~mFgsE 258 (367)
T PF12217_consen 235 PNNVHHTNLPFAKVGDVLYMFGSE 258 (367)
T ss_dssp TT---SS---EEEETTEEEEEEE-
T ss_pred cccccccCCCceeeCCEEEEEecc
Confidence 3222222222 6789999999853
No 112
>PRK04922 tolB translocation protein TolB; Provisional
Probab=94.17 E-value=5.6 Score=38.21 Aligned_cols=182 Identities=14% Similarity=0.037 Sum_probs=94.6
Q ss_pred ceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccc
Q 040145 118 KIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITAR 196 (402)
Q Consensus 118 ~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r 196 (402)
...++++|..+++-..+...+.. ........++ .|++....+ ...+++++|..++.-+.+..-....
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~-------~~~~~~SpDG~~l~~~~s~~-----g~~~Iy~~d~~~g~~~~lt~~~~~~ 294 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGI-------NGAPSFSPDGRRLALTLSRD-----GNPEIYVMDLGSRQLTRLTNHFGID 294 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCC-------ccCceECCCCCEEEEEEeCC-----CCceEEEEECCCCCeEECccCCCCc
Confidence 45678889888777666544311 1122222344 555443221 1348999999998876664322111
Q ss_pred cceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCccee-EEEECC-EEEEEcccccCCccCCcEEE
Q 040145 197 SFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYD-AAVLDG-KLLVTEGWLWPFFVSPRGQV 274 (402)
Q Consensus 197 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~-~~~~~g-~ly~~gG~~~~~~~~~~~~~ 274 (402)
.......-+..|++.....+ ...++.+|..++..+.+..- ...... ...-+| .|++..+..+ ...++.
T Consensus 295 ~~~~~spDG~~l~f~sd~~g----~~~iy~~dl~~g~~~~lt~~--g~~~~~~~~SpDG~~Ia~~~~~~~----~~~I~v 364 (433)
T PRK04922 295 TEPTWAPDGKSIYFTSDRGG----RPQIYRVAASGGSAERLTFQ--GNYNARASVSPDGKKIAMVHGSGG----QYRIAV 364 (433)
T ss_pred cceEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEeecC--CCCccCEEECCCCCEEEEEECCCC----ceeEEE
Confidence 11111112334555443222 34688899888887766421 111112 222244 4555443211 136899
Q ss_pred EeCCCCCeeeccccccCCCceeEEEECCEEEEEeccC--CcEEEEEeCCCC
Q 040145 275 YDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELE--RMKLKVYDPSTD 323 (402)
Q Consensus 275 yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~--~~~~~~yd~~~~ 323 (402)
+|+.++....+.... . .......-+|+.+++.... ...++.+|....
T Consensus 365 ~d~~~g~~~~Lt~~~-~-~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 365 MDLSTGSVRTLTPGS-L-DESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred EECCCCCeEECCCCC-C-CCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 999888877665321 1 1122334466655554332 346888888654
No 113
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=94.05 E-value=2.8 Score=38.96 Aligned_cols=116 Identities=15% Similarity=0.223 Sum_probs=67.9
Q ss_pred ceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEE
Q 040145 198 FFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQV 274 (402)
Q Consensus 198 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~ 274 (402)
.++++++ ++.|+..|-. -..+-+||..... .++.+|..-.......+ ||-..+.+..+ ..+..
T Consensus 350 ~ts~~fHpDgLifgtgt~------d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add------~~V~l 415 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTP------DGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADD------GSVKL 415 (506)
T ss_pred eEEeeEcCCceEEeccCC------CceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecC------CeEEE
Confidence 3445555 5667766654 3457789998876 66666664333344444 44444444322 24889
Q ss_pred EeCCCCC-eeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCC
Q 040145 275 YDPSTDN-WESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEG 330 (402)
Q Consensus 275 yd~~~~~-W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~ 330 (402)
+|+...+ ...+. .+....-....+ .|..++++|. .-.|+.|+..+..|+++..
T Consensus 416 wDLRKl~n~kt~~--l~~~~~v~s~~fD~SGt~L~~~g~-~l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 416 WDLRKLKNFKTIQ--LDEKKEVNSLSFDQSGTYLGIAGS-DLQVYICKKKTKSWTEIKE 471 (506)
T ss_pred EEehhhcccceee--ccccccceeEEEcCCCCeEEeecc-eeEEEEEecccccceeeeh
Confidence 9997654 33332 222221112333 4666777765 4578888889999999984
No 114
>PLN00181 protein SPA1-RELATED; Provisional
Probab=94.03 E-value=9.1 Score=40.09 Aligned_cols=174 Identities=14% Similarity=0.082 Sum_probs=84.3
Q ss_pred CEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCc-ccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCc
Q 040145 157 GTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMI-TARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGN 233 (402)
Q Consensus 157 ~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 233 (402)
+..++.|+.+ ..+.+||..+++-.. .+. ....-.++... ++.+++.|+. -..+.+||..+..
T Consensus 545 ~~~las~~~D-------g~v~lWd~~~~~~~~--~~~~H~~~V~~l~~~p~~~~~L~Sgs~------Dg~v~iWd~~~~~ 609 (793)
T PLN00181 545 KSQVASSNFE-------GVVQVWDVARSQLVT--EMKEHEKRVWSIDYSSADPTLLASGSD------DGSVKLWSINQGV 609 (793)
T ss_pred CCEEEEEeCC-------CeEEEEECCCCeEEE--EecCCCCCEEEEEEcCCCCCEEEEEcC------CCEEEEEECCCCc
Confidence 4556666652 278899988764322 111 11122233332 4567777776 3457888987654
Q ss_pred E-EEcCCCCCCCcceeEEEE---CCEEEEEcccccCCccCCcEEEEeCCCCC--eeeccccccCCCceeEEEECCEEEEE
Q 040145 234 W-RTIASMGTNMASYDAAVL---DGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WESMAVGLREGWTGSSVVVYEHLFVV 307 (402)
Q Consensus 234 W-~~~~~~~~~~~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~l~~~ 307 (402)
- ..+. .. .....+.+ ++.++++|+.+ ..+..||..+.. ...+.. .. .........++..++.
T Consensus 610 ~~~~~~---~~-~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~~~~~~~~~-h~-~~V~~v~f~~~~~lvs 677 (793)
T PLN00181 610 SIGTIK---TK-ANICCVQFPSESGRSLAFGSAD------HKVYYYDLRNPKLPLCTMIG-HS-KTVSYVRFVDSSTLVS 677 (793)
T ss_pred EEEEEe---cC-CCeEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCCccceEecC-CC-CCEEEEEEeCCCEEEE
Confidence 2 1221 11 11112222 46777777653 378999987542 111111 00 1111122346666666
Q ss_pred eccCCcEEEEEeCCCC----ceeecCCCCCCccccCCeEEEEeCCEEEEEecCcee
Q 040145 308 SELERMKLKVYDPSTD----SWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHV 359 (402)
Q Consensus 308 gg~~~~~~~~yd~~~~----~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~ 359 (402)
|+. ...+.+||.... .|..+....-. ...........++.+++.|+.++.
T Consensus 678 ~s~-D~~ikiWd~~~~~~~~~~~~l~~~~gh-~~~i~~v~~s~~~~~lasgs~D~~ 731 (793)
T PLN00181 678 SST-DNTLKLWDLSMSISGINETPLHSFMGH-TNVKNFVGLSVSDGYIATGSETNE 731 (793)
T ss_pred EEC-CCEEEEEeCCCCccccCCcceEEEcCC-CCCeeEEEEcCCCCEEEEEeCCCE
Confidence 665 456888887643 23332211100 001111223345677777775544
No 115
>PTZ00421 coronin; Provisional
Probab=93.89 E-value=6.9 Score=38.26 Aligned_cols=152 Identities=8% Similarity=0.111 Sum_probs=73.8
Q ss_pred CEEEEEeCccCCCCCCCceEEEEECCCCceee-cCCCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcE
Q 040145 157 GTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTV-MNKMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNW 234 (402)
Q Consensus 157 ~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~-~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 234 (402)
+.+++.|+.+ ..+.+||..+++-.. +... ...-.++.. .++.+++.|+. -..+.+||+.++.-
T Consensus 138 ~~iLaSgs~D-------gtVrIWDl~tg~~~~~l~~h--~~~V~sla~spdG~lLatgs~------Dg~IrIwD~rsg~~ 202 (493)
T PTZ00421 138 MNVLASAGAD-------MVVNVWDVERGKAVEVIKCH--SDQITSLEWNLDGSLLCTTSK------DKKLNIIDPRDGTI 202 (493)
T ss_pred CCEEEEEeCC-------CEEEEEECCCCeEEEEEcCC--CCceEEEEEECCCCEEEEecC------CCEEEEEECCCCcE
Confidence 4577777763 268899998775221 1111 111122222 25677777775 35688999987652
Q ss_pred E-EcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCC--eeeccccccCCCceeEEEE--CCEEEEEec
Q 040145 235 R-TIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WESMAVGLREGWTGSSVVV--YEHLFVVSE 309 (402)
Q Consensus 235 ~-~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~--~~~l~~~gg 309 (402)
. .+...............++..++..|.... ....+..||+.+.. ..... ...........+ ++.++++||
T Consensus 203 v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s--~Dr~VklWDlr~~~~p~~~~~--~d~~~~~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 203 VSSVEAHASAKSQRCLWAKRKDLIITLGCSKS--QQRQIMLWDTRKMASPYSTVD--LDQSSALFIPFFDEDTNLLYIGS 278 (493)
T ss_pred EEEEecCCCCcceEEEEcCCCCeEEEEecCCC--CCCeEEEEeCCCCCCceeEec--cCCCCceEEEEEcCCCCEEEEEE
Confidence 1 221111111111111123334444443211 12368899986533 11111 111111111222 566666676
Q ss_pred cCCcEEEEEeCCCCceee
Q 040145 310 LERMKLKVYDPSTDSWET 327 (402)
Q Consensus 310 ~~~~~~~~yd~~~~~W~~ 327 (402)
.+...|..||..+.+...
T Consensus 279 kgDg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 279 KGEGNIRCFELMNERLTF 296 (493)
T ss_pred eCCCeEEEEEeeCCceEE
Confidence 545678899988776544
No 116
>PRK04043 tolB translocation protein TolB; Provisional
Probab=93.78 E-value=6.5 Score=37.59 Aligned_cols=186 Identities=6% Similarity=-0.086 Sum_probs=102.4
Q ss_pred ceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccc
Q 040145 118 KIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITAR 196 (402)
Q Consensus 118 ~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r 196 (402)
..+++++|..+++-+.+...+. .........++ +|++.-... ...++|++|..++.++++...+...
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g-------~~~~~~~SPDG~~la~~~~~~-----g~~~Iy~~dl~~g~~~~LT~~~~~d 279 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQG-------MLVVSDVSKDGSKLLLTMAPK-----GQPDIYLYDTNTKTLTQITNYPGID 279 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCC-------cEEeeEECCCCCEEEEEEccC-----CCcEEEEEECCCCcEEEcccCCCcc
Confidence 3478999998887777654331 11122222344 565544332 2458999999999998886544311
Q ss_pred cceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCE-EEEEcccccCC--ccCCcEE
Q 040145 197 SFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGK-LLVTEGWLWPF--FVSPRGQ 273 (402)
Q Consensus 197 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~-ly~~gG~~~~~--~~~~~~~ 273 (402)
.......-+.+||+.....+ ...++++|..++..+++..-. ... ....-+|+ |.+........ .....++
T Consensus 280 ~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g--~~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~ 352 (419)
T PRK04043 280 VNGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHG--KNN-SSVSTYKNYIVYSSRETNNEFGKNTFNLY 352 (419)
T ss_pred CccEECCCCCEEEEEECCCC----CceEEEEECCCCCeEeCccCC--CcC-ceECCCCCEEEEEEcCCCcccCCCCcEEE
Confidence 12222222457777765422 467999999998887664221 112 12333555 43333221111 1124789
Q ss_pred EEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccC--CcEEEEEeCCCCc
Q 040145 274 VYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELE--RMKLKVYDPSTDS 324 (402)
Q Consensus 274 ~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~--~~~~~~yd~~~~~ 324 (402)
.+|++++.++.+... . ........-+|+.+++.... ...++.++.+.+.
T Consensus 353 v~d~~~g~~~~LT~~-~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 353 LISTNSDYIRRLTAN-G-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred EEECCCCCeEECCCC-C-CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence 999999998888752 1 11122334466644443221 3457788887653
No 117
>PTZ00421 coronin; Provisional
Probab=93.70 E-value=7.5 Score=38.02 Aligned_cols=146 Identities=11% Similarity=0.113 Sum_probs=70.6
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCceee-----cCCCccc-ccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEE
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTV-----MNKMITA-RSFFASGVI--GGMIYVAGGSSADLFELDSAEVL 227 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~-----~~~~~~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~y 227 (402)
++.+++.|+.+ ..+.+||..++.... +..+... ..-..+... ++.+++.||. -..+.+|
T Consensus 87 d~~~LaSgS~D-------gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~------DgtVrIW 153 (493)
T PTZ00421 87 DPQKLFTASED-------GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA------DMVVNVW 153 (493)
T ss_pred CCCEEEEEeCC-------CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC------CCEEEEE
Confidence 45677777763 268888876643211 1111111 111122222 2356777765 3468899
Q ss_pred cCCCCcEEEcCCCCCCCcceeEEE--ECCEEEEEcccccCCccCCcEEEEeCCCCCee-eccccccCCCceeEE-EECCE
Q 040145 228 DPVKGNWRTIASMGTNMASYDAAV--LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWE-SMAVGLREGWTGSSV-VVYEH 303 (402)
Q Consensus 228 d~~t~~W~~~~~~~~~~~~~~~~~--~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~~~~~~~-~~~~~ 303 (402)
|..++.-.. .+.........+. .+|.+++.|+.+ ..+.+||+.+++-. .+.. ........++ ..++.
T Consensus 154 Dl~tg~~~~--~l~~h~~~V~sla~spdG~lLatgs~D------g~IrIwD~rsg~~v~tl~~-H~~~~~~~~~w~~~~~ 224 (493)
T PTZ00421 154 DVERGKAVE--VIKCHSDQITSLEWNLDGSLLCTTSKD------KKLNIIDPRDGTIVSSVEA-HASAKSQRCLWAKRKD 224 (493)
T ss_pred ECCCCeEEE--EEcCCCCceEEEEEECCCCEEEEecCC------CEEEEEECCCCcEEEEEec-CCCCcceEEEEcCCCC
Confidence 998765321 1111111122222 267777777753 36889999876521 1211 1111111111 12333
Q ss_pred EEEEeccC---CcEEEEEeCCCC
Q 040145 304 LFVVSELE---RMKLKVYDPSTD 323 (402)
Q Consensus 304 l~~~gg~~---~~~~~~yd~~~~ 323 (402)
.++..|.+ ...+..||..+.
T Consensus 225 ~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 225 LIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred eEEEEecCCCCCCeEEEEeCCCC
Confidence 33333432 357999998653
No 118
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=93.30 E-value=6.4 Score=35.97 Aligned_cols=243 Identities=16% Similarity=0.063 Sum_probs=109.7
Q ss_pred CeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEc-cCCEEEEEeCccCC--CCCCCceEEEEEC
Q 040145 105 PWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIP-REGTLFVCGGMVSD--VDCPLDLVLKYEM 181 (402)
Q Consensus 105 ~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~-~~~~i~v~GG~~~~--~~~~~~~~~~~d~ 181 (402)
+.+|+..........+++++|..+++..-+-+.. .++..++. .+..+|+..-...- ...+++-+.+||+
T Consensus 3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~~g--------~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~ 74 (342)
T PF06433_consen 3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGMIDTG--------FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDT 74 (342)
T ss_dssp TEEEEEE-GGGGSSEEEEEEETTTTEEEEEEEEE--------SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEET
T ss_pred cEEEEECCccccccceEEEEECCCCcEEEEeecc--------cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEec
Confidence 5678875422222357999999998865443222 12222232 34567765422100 0135778999999
Q ss_pred CCCceee---cCCC---c-cc-ccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCc--------
Q 040145 182 QKNRWTV---MNKM---I-TA-RSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMA-------- 245 (402)
Q Consensus 182 ~t~~W~~---~~~~---~-~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~-------- 245 (402)
.|-+-+. +|+- . .+ +..+....-+..+||.-- .+..+|-+.|.+.++--. .++.|.+
T Consensus 75 ~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~-----TPa~SVtVVDl~~~kvv~--ei~~PGC~~iyP~~~ 147 (342)
T PF06433_consen 75 QTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNF-----TPATSVTVVDLAAKKVVG--EIDTPGCWLIYPSGN 147 (342)
T ss_dssp TTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEE-----SSSEEEEEEETTTTEEEE--EEEGTSEEEEEEEET
T ss_pred CcCcccceEecCCcchheecccccceEEccCCcEEEEEcc-----CCCCeEEEEECCCCceee--eecCCCEEEEEecCC
Confidence 9985332 3431 1 11 112222222335566532 237789999999987643 2222222
Q ss_pred -ceeEEEECCEEEEEc-ccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEe--ccCCcEEEEEeC
Q 040145 246 -SYDAAVLDGKLLVTE-GWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVS--ELERMKLKVYDP 320 (402)
Q Consensus 246 -~~~~~~~~g~ly~~g-G~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~g--g~~~~~~~~yd~ 320 (402)
+..+.+-+|.+..+. +..+... ...-..||+..+-.-.-+. ......... ..++|.+|-+. |....-...+..
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~~F~~~~dp~f~~~~-~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~ 225 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEA-QKSTKVFDPDDDPLFEHPA-YSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSL 225 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEE-EEEEEESSTTTS-B-S--E-EETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEES
T ss_pred CceEEEecCCceEEEEECCCCCEe-EeeccccCCCCcccccccc-eECCCCeEEEEecCCEEEEEeccCCcccccCcccc
Confidence 222222244443321 1111111 1122455555443221111 111111111 45677777652 221111222222
Q ss_pred CC-----CceeecCCCCCCccccCCeEEEEeCCEEEEEe-----cCceeeeEEEEecccccc
Q 040145 321 ST-----DSWETIEGPPLPEQICKPFAVNACDCRVYVVG-----RNLHVAVGHITRLSTSEK 372 (402)
Q Consensus 321 ~~-----~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~G-----G~~~~~~~~v~~~~~~~~ 372 (402)
.+ ..|..= .....+.....++|||+- |..+..-.+||+||+.++
T Consensus 226 ~t~~e~~~~WrPG--------G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~ 279 (342)
T PF06433_consen 226 LTDAEKADGWRPG--------GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH 279 (342)
T ss_dssp S-HHHHHTTEEE---------SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT
T ss_pred cCccccccCcCCc--------ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC
Confidence 11 123221 122334445678999864 233556789999998776
No 119
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=93.28 E-value=4.4 Score=34.07 Aligned_cols=146 Identities=16% Similarity=0.137 Sum_probs=76.5
Q ss_pred ceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCc--eeec----CCCcccccceEEEEE-CCEEEEEcCCCCCCCC
Q 040145 148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVM----NKMITARSFFASGVI-GGMIYVAGGSSADLFE 220 (402)
Q Consensus 148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~----~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~ 220 (402)
..++.. ..+.+|++-|. .+|+++..... -+.+ +.+|. ....+.... ++++|++-|.
T Consensus 9 iDA~~~-~~g~~y~FkG~---------~~w~~~~~~~~~~p~~I~~~w~~~p~-~IDAa~~~~~~~~~yfFkg~------ 71 (194)
T cd00094 9 FDAVTT-LRGELYFFKGR---------YFWRLSPGKPPGSPFLISSFWPSLPS-PVDAAFERPDTGKIYFFKGD------ 71 (194)
T ss_pred CCeEEE-eCCEEEEEeCC---------EEEEEeCCCCCCCCeEhhhhCCCCCC-CccEEEEECCCCEEEEECCC------
Confidence 344443 35899999775 68888865211 1111 11221 111122222 3789999763
Q ss_pred CCeeEEEcCCCCcEE---EcCCCCCCC--cc-eeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeec-----cc
Q 040145 221 LDSAEVLDPVKGNWR---TIASMGTNM--AS-YDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESM-----AV 287 (402)
Q Consensus 221 ~~~~~~yd~~t~~W~---~~~~~~~~~--~~-~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~-----~~ 287 (402)
..+.||..+..+. .+.....+. .. -++... ++++|++.|. ..+.||..+++...- ..
T Consensus 72 --~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~--------~y~ry~~~~~~v~~~yP~~i~~ 141 (194)
T cd00094 72 --KYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD--------KYWRYDEKTQKMDPGYPKLIET 141 (194)
T ss_pred --EEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC--------EEEEEeCCCccccCCCCcchhh
Confidence 4677776542221 111111111 22 223333 6899999884 678888766554211 10
Q ss_pred ---cccCCCceeEEEE-CCEEEEEeccCCcEEEEEeCCCCc
Q 040145 288 ---GLREGWTGSSVVV-YEHLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 288 ---~~~~~~~~~~~~~-~~~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
..+.. ..++... ++++|++-|. ..++||..+++
T Consensus 142 ~w~g~p~~-idaa~~~~~~~~yfF~g~---~y~~~d~~~~~ 178 (194)
T cd00094 142 DFPGVPDK-VDAAFRWLDGYYYFFKGD---QYWRFDPRSKE 178 (194)
T ss_pred cCCCcCCC-cceeEEeCCCcEEEEECC---EEEEEeCccce
Confidence 11211 1222223 4899999665 79999998765
No 120
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.06 E-value=9.6 Score=37.33 Aligned_cols=208 Identities=15% Similarity=0.152 Sum_probs=101.6
Q ss_pred CCCeEEEEEEeCCCCceeEEEeecCCCc--EEeCCCCCCCCCCCC-CCceEEEEccC-CEEEEEeCccCCCCCCCceEEE
Q 040145 103 KDPWLFVFAFHKCTGKIQWQVLDLTHYC--WHTIPAMPCKDKVCP-HGFRCVSIPRE-GTLFVCGGMVSDVDCPLDLVLK 178 (402)
Q Consensus 103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~--W~~l~~~~~~~~~~~-~~~~~~~~~~~-~~i~v~GG~~~~~~~~~~~~~~ 178 (402)
.++.+|+...+ ..++++|..+.+ |+.-...+....... ...+. ++ .+ +.||+... ...++.
T Consensus 60 ~~g~vy~~~~~-----g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~-~~-~~~~~V~v~~~--------~g~v~A 124 (488)
T cd00216 60 VDGDMYFTTSH-----SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGV-AY-WDPRKVFFGTF--------DGRLVA 124 (488)
T ss_pred ECCEEEEeCCC-----CcEEEEECCCChhhceeCCCCCccccccccccCCc-EE-ccCCeEEEecC--------CCeEEE
Confidence 46777775422 358899998765 865322220000000 01112 22 25 77776432 237999
Q ss_pred EECCCCc--eeecCCCcc-cc--cceEEEEECCEEEEEcCCCCCC---CCCCeeEEEcCCCCc--EEEcCCCC----CCC
Q 040145 179 YEMQKNR--WTVMNKMIT-AR--SFFASGVIGGMIYVAGGSSADL---FELDSAEVLDPVKGN--WRTIASMG----TNM 244 (402)
Q Consensus 179 ~d~~t~~--W~~~~~~~~-~r--~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~~yd~~t~~--W~~~~~~~----~~~ 244 (402)
+|..|++ |+.-..... .. ...+.++.++.+|+ |..+... .....++.||..|++ |+.-...+ .+.
T Consensus 125 lD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~ 203 (488)
T cd00216 125 LDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPT 203 (488)
T ss_pred EECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCC
Confidence 9999885 876432211 00 12233455666665 4322111 114578999998875 87532111 000
Q ss_pred ----------c---ceeEEEE---CCEEEEEccccc-----------CCccCCcEEEEeCCCC--Ceeecccccc----C
Q 040145 245 ----------A---SYDAAVL---DGKLLVTEGWLW-----------PFFVSPRGQVYDPSTD--NWESMAVGLR----E 291 (402)
Q Consensus 245 ----------~---~~~~~~~---~g~ly~~gG~~~-----------~~~~~~~~~~yd~~~~--~W~~~~~~~~----~ 291 (402)
. ..+...+ ++.+|+-.+... +....+.++++|.+++ .|+.-..... .
T Consensus 204 ~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~ 283 (488)
T cd00216 204 WGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYD 283 (488)
T ss_pred CCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccc
Confidence 0 0111222 467777654320 1122347999999887 4875322111 0
Q ss_pred CCceeEE----EECCE---EEEEeccCCcEEEEEeCCCCc--eee
Q 040145 292 GWTGSSV----VVYEH---LFVVSELERMKLKVYDPSTDS--WET 327 (402)
Q Consensus 292 ~~~~~~~----~~~~~---l~~~gg~~~~~~~~yd~~~~~--W~~ 327 (402)
......+ ..++. +.++|.. ...++.+|.++.+ |+.
T Consensus 284 ~~s~p~~~~~~~~~g~~~~~V~~g~~-~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 284 GPNQPSLADIKPKDGKPVPAIVHAPK-NGFFYVLDRTTGKLISAR 327 (488)
T ss_pred cCCCCeEEeccccCCCeeEEEEEECC-CceEEEEECCCCcEeeEe
Confidence 1111111 12332 3333433 4579999998764 765
No 121
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=93.05 E-value=0.062 Score=47.47 Aligned_cols=44 Identities=18% Similarity=0.303 Sum_probs=37.9
Q ss_pred CCCCcHHHHHHhhccC-----ccchhhhhhhccHhHHHhhcCchHhHHHH
Q 040145 53 IPGLPDDVALNCLLRL-----PVESHAACRAVCKRWHLLLGNKERFFTRR 97 (402)
Q Consensus 53 ~~~Lp~dl~~~il~rl-----p~~~l~~~~~v~k~W~~l~~s~~~~~~~r 97 (402)
|..||||++.+||.++ ...++.++.+|||.|......| ++...-
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~-~lwR~a 155 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDP-ELWRLA 155 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcCh-HHHHHH
Confidence 5789999999999864 4589999999999999999999 776443
No 122
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=92.82 E-value=6.3 Score=34.62 Aligned_cols=157 Identities=15% Similarity=0.109 Sum_probs=88.6
Q ss_pred CceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCc---eeecCCCccc---------ccceEEEEECCEEEEEcCC
Q 040145 147 GFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNR---WTVMNKMITA---------RSFFASGVIGGMIYVAGGS 214 (402)
Q Consensus 147 ~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~---W~~~~~~~~~---------r~~~~~~~~~~~iyv~GG~ 214 (402)
+-+.++. +|.+|.--. .+..+..||..+++ +..+|..... ....-.++-.+-|+|+-..
T Consensus 71 GtG~vVY--ngslYY~~~-------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat 141 (250)
T PF02191_consen 71 GTGHVVY--NGSLYYNKY-------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYAT 141 (250)
T ss_pred cCCeEEE--CCcEEEEec-------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEec
Confidence 3444444 777776533 36689999999986 4455543211 1122334444567777555
Q ss_pred CCCCCCCCeeEEEcCCCC----cEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeecccccc
Q 040145 215 SADLFELDSAEVLDPVKG----NWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLR 290 (402)
Q Consensus 215 ~~~~~~~~~~~~yd~~t~----~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~ 290 (402)
.+... .--+-..|+.+- +|..- .+.. ....+.++-|.||++-...... ..-.++||+.+++=..+..+.+
T Consensus 142 ~~~~g-~ivvskld~~tL~v~~tw~T~--~~k~-~~~naFmvCGvLY~~~s~~~~~--~~I~yafDt~t~~~~~~~i~f~ 215 (250)
T PF02191_consen 142 EDNNG-NIVVSKLDPETLSVEQTWNTS--YPKR-SAGNAFMVCGVLYATDSYDTRD--TEIFYAFDTYTGKEEDVSIPFP 215 (250)
T ss_pred CCCCC-cEEEEeeCcccCceEEEEEec--cCch-hhcceeeEeeEEEEEEECCCCC--cEEEEEEECCCCceeceeeeec
Confidence 33221 234556677654 57642 2222 2223455578999997765332 2356899999887766655455
Q ss_pred CCCceeE-EEE---CCEEEEEeccCCcEEEEEeCC
Q 040145 291 EGWTGSS-VVV---YEHLFVVSELERMKLKVYDPS 321 (402)
Q Consensus 291 ~~~~~~~-~~~---~~~l~~~gg~~~~~~~~yd~~ 321 (402)
.+....+ +.. +.+||+.. ......|+..
T Consensus 216 ~~~~~~~~l~YNP~dk~LY~wd---~G~~v~Y~v~ 247 (250)
T PF02191_consen 216 NPYGNISMLSYNPRDKKLYAWD---NGYQVTYDVR 247 (250)
T ss_pred cccCceEeeeECCCCCeEEEEE---CCeEEEEEEE
Confidence 5444333 333 57888873 2356666653
No 123
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=92.55 E-value=4.4 Score=40.04 Aligned_cols=113 Identities=17% Similarity=0.264 Sum_probs=66.6
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCc--eeecCCCcccc--------cceEEEEECCEEEEEcCCCCCCCCCCeeE
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVMNKMITAR--------SFFASGVIGGMIYVAGGSSADLFELDSAE 225 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 225 (402)
++.||+.... ..++.+|..|++ |+.-...+... ...+.+..+++||+... ...+.
T Consensus 69 ~g~vyv~s~~--------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------dg~l~ 133 (527)
T TIGR03075 69 DGVMYVTTSY--------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------DARLV 133 (527)
T ss_pred CCEEEEECCC--------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------CCEEE
Confidence 8899986532 268999999885 87644332111 11234566788887542 34689
Q ss_pred EEcCCCCc--EEEcC-CCCCC-CcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCC--eee
Q 040145 226 VLDPVKGN--WRTIA-SMGTN-MASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WES 284 (402)
Q Consensus 226 ~yd~~t~~--W~~~~-~~~~~-~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~ 284 (402)
.+|.+|++ |+.-. ++... .....-++.+++||+-....+ ......+.+||.++++ |+.
T Consensus 134 ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~-~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 134 ALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGE-FGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred EEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccc-cCCCcEEEEEECCCCceeEec
Confidence 99999886 86532 22211 112234566888877532111 1112368899998874 764
No 124
>PRK13684 Ycf48-like protein; Provisional
Probab=92.43 E-value=8.9 Score=35.40 Aligned_cols=193 Identities=12% Similarity=0.196 Sum_probs=90.1
Q ss_pred CCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCC-Cccccc-ceEEEEEC
Q 040145 128 HYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNK-MITARS-FFASGVIG 205 (402)
Q Consensus 128 ~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~-~~~~r~-~~~~~~~~ 205 (402)
...|+... .+.. ..+..+.+...+..|++|-. ..+++=+=.-.+|+.... ++.... ...+...+
T Consensus 34 ~~~W~~~~-~~~~-----~~l~~v~F~d~~~g~avG~~--------G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~ 99 (334)
T PRK13684 34 SSPWQVID-LPTE-----ANLLDIAFTDPNHGWLVGSN--------RTLLETNDGGETWEERSLDLPEENFRLISISFKG 99 (334)
T ss_pred CCCcEEEe-cCCC-----CceEEEEEeCCCcEEEEECC--------CEEEEEcCCCCCceECccCCcccccceeeeEEcC
Confidence 34687664 3311 22333444345567777632 122222122247988642 322222 22333345
Q ss_pred CEEEEEcCCCCCCCCCCeeEEEcCCC--CcEEEcCCC-CCCCcceeEEEE-CCEEEEEcccccCCccCCcEEEEeCCCCC
Q 040145 206 GMIYVAGGSSADLFELDSAEVLDPVK--GNWRTIASM-GTNMASYDAAVL-DGKLLVTEGWLWPFFVSPRGQVYDPSTDN 281 (402)
Q Consensus 206 ~~iyv~GG~~~~~~~~~~~~~yd~~t--~~W~~~~~~-~~~~~~~~~~~~-~g~ly~~gG~~~~~~~~~~~~~yd~~~~~ 281 (402)
+..|++|.. . .+|-... .+|+.+... ..+......... ++.+|+.|... .+++=+-.-.+
T Consensus 100 ~~~~~~G~~-------g--~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~G-------~i~~S~DgG~t 163 (334)
T PRK13684 100 DEGWIVGQP-------S--LLLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNVG-------AIYRTTDGGKN 163 (334)
T ss_pred CcEEEeCCC-------c--eEEEECCCCCCCeEccCCcCCCCCceEEEEECCCcceeeeccc-------eEEEECCCCCC
Confidence 556666532 1 2344433 479988532 112222223333 34466655421 35555555678
Q ss_pred eeeccccccCCCceeEEEECCEEEEEeccCCcEEEE-EeCCCCceeecCCCCCCccccCCeEE-EEeCCEEEEEecC
Q 040145 282 WESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKV-YDPSTDSWETIEGPPLPEQICKPFAV-NACDCRVYVVGRN 356 (402)
Q Consensus 282 W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~-yd~~~~~W~~~~~~~~p~~~~~~~~~-~~~~~~i~v~GG~ 356 (402)
|+.+...... .........+..+++.|..+ .++. .|....+|+.+.. +.. ....++ ...++.++++|..
T Consensus 164 W~~~~~~~~g-~~~~i~~~~~g~~v~~g~~G-~i~~s~~~gg~tW~~~~~---~~~-~~l~~i~~~~~g~~~~vg~~ 234 (334)
T PRK13684 164 WEALVEDAAG-VVRNLRRSPDGKYVAVSSRG-NFYSTWEPGQTAWTPHQR---NSS-RRLQSMGFQPDGNLWMLARG 234 (334)
T ss_pred ceeCcCCCcc-eEEEEEECCCCeEEEEeCCc-eEEEEcCCCCCeEEEeeC---CCc-ccceeeeEcCCCCEEEEecC
Confidence 9998753322 22222233333444444323 3443 3555568998863 211 222333 3457888888764
No 125
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.27 E-value=6.2 Score=33.21 Aligned_cols=181 Identities=13% Similarity=0.139 Sum_probs=103.9
Q ss_pred cCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCc-ccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc
Q 040145 155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMI-TARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN 233 (402)
Q Consensus 155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 233 (402)
.+++||...|.. ..+.+.++|..+++-..-.+++ ..-.+-+.+.+++.+|..--. ..-.++||+.|
T Consensus 54 ~~g~i~esTG~y-----g~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~------egvaf~~d~~t-- 120 (262)
T COG3823 54 LDGHILESTGLY-----GFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWK------EGVAFKYDADT-- 120 (262)
T ss_pred eCCEEEEecccc-----ccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEec------cceeEEEChHH--
Confidence 488999888874 3458999999988633322333 234455778889999988543 23457888865
Q ss_pred EEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCe-eecc---ccccCCCceeEEEECCEEEEEec
Q 040145 234 WRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNW-ESMA---VGLREGWTGSSVVVYEHLFVVSE 309 (402)
Q Consensus 234 W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W-~~~~---~~~~~~~~~~~~~~~~~l~~~gg 309 (402)
.+.+...+....+++.+.-+..|.+..|. ..+..-||++-.= ..+. ...|..-..-.=.++|.+|.==-
T Consensus 121 ~~~lg~~~y~GeGWgLt~d~~~LimsdGs-------atL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw 193 (262)
T COG3823 121 LEELGRFSYEGEGWGLTSDDKNLIMSDGS-------ATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVW 193 (262)
T ss_pred hhhhcccccCCcceeeecCCcceEeeCCc-------eEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeee
Confidence 44666677777777777766666665553 2455556654211 1111 11111111111234666664211
Q ss_pred cCCcEEEEEeCCCC---ceeecCCCCCCccccCC-----eEEE--EeCCEEEEEecC
Q 040145 310 LERMKLKVYDPSTD---SWETIEGPPLPEQICKP-----FAVN--ACDCRVYVVGRN 356 (402)
Q Consensus 310 ~~~~~~~~yd~~~~---~W~~~~~~~~p~~~~~~-----~~~~--~~~~~i~v~GG~ 356 (402)
-...|.+.||++. .|.++.+++.-...... .+.+ ..+|++||.|-.
T Consensus 194 -~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~ 249 (262)
T COG3823 194 -QTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKL 249 (262)
T ss_pred -eecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCc
Confidence 1568899999886 59888853211111111 1222 345788888763
No 126
>PTZ00420 coronin; Provisional
Probab=92.18 E-value=13 Score=36.89 Aligned_cols=143 Identities=10% Similarity=0.115 Sum_probs=67.9
Q ss_pred CEEEEEeCccCCCCCCCceEEEEECCCCc--eeecC----CCccc-ccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEE
Q 040145 157 GTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVMN----KMITA-RSFFASGVI--GGMIYVAGGSSADLFELDSAEVL 227 (402)
Q Consensus 157 ~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~~----~~~~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~y 227 (402)
+.+++.|+.+ ..+.+||..++. ...+. .+... ..-.+++.. +..+++.||. -..+.+|
T Consensus 87 ~~lLASgS~D-------gtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~------DgtIrIW 153 (568)
T PTZ00420 87 SEILASGSED-------LTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF------DSFVNIW 153 (568)
T ss_pred CCEEEEEeCC-------CeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeC------CCeEEEE
Confidence 5677777763 268888876532 11111 01111 111122222 2345556665 3467889
Q ss_pred cCCCCcEEEcCCCCCCCcceeEEE--ECCEEEEEcccccCCccCCcEEEEeCCCCCee-eccccccCCCceeEEE-----
Q 040145 228 DPVKGNWRTIASMGTNMASYDAAV--LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWE-SMAVGLREGWTGSSVV----- 299 (402)
Q Consensus 228 d~~t~~W~~~~~~~~~~~~~~~~~--~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~~~~~~~~----- 299 (402)
|..+..=. ..+.... ...++. .+|.+++.++.+ ..+.+||+.+++=. .+.. .........+.
T Consensus 154 Dl~tg~~~--~~i~~~~-~V~SlswspdG~lLat~s~D------~~IrIwD~Rsg~~i~tl~g-H~g~~~s~~v~~~~fs 223 (568)
T PTZ00420 154 DIENEKRA--FQINMPK-KLSSLKWNIKGNLLSGTCVG------KHMHIIDPRKQEIASSFHI-HDGGKNTKNIWIDGLG 223 (568)
T ss_pred ECCCCcEE--EEEecCC-cEEEEEECCCCCEEEEEecC------CEEEEEECCCCcEEEEEec-ccCCceeEEEEeeeEc
Confidence 98876511 1111111 122222 267777776642 36899999875421 1111 11111111111
Q ss_pred ECCEEEEEeccCC---cEEEEEeCCC
Q 040145 300 VYEHLFVVSELER---MKLKVYDPST 322 (402)
Q Consensus 300 ~~~~l~~~gg~~~---~~~~~yd~~~ 322 (402)
.++..++.+|.+. ..+.+||..+
T Consensus 224 ~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 224 GDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred CCCCEEEEEEcCCCCccEEEEEECCC
Confidence 2445555556543 3699999874
No 127
>smart00284 OLF Olfactomedin-like domains.
Probab=91.97 E-value=8.1 Score=33.89 Aligned_cols=184 Identities=14% Similarity=0.082 Sum_probs=101.5
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECC----CCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCC
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQ----KNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVK 231 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~----t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t 231 (402)
++++|+..+.. ...+.++.|... .+.+.+.-.+|.+-.+.+.++.+|.+|.--.. ...+..||..+
T Consensus 34 ~~~~wv~~~~~----~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~~------s~~iiKydL~t 103 (255)
T smart00284 34 KSLYWYMPLNT----RVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKFN------SHDICRFDLTT 103 (255)
T ss_pred CceEEEEcccc----CCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEecC------CccEEEEECCC
Confidence 46788876642 123356666433 33444444567777778889999999986543 57799999999
Q ss_pred CcEEEcCCCCCCC----c-----c---eeEEEECCEEEEEcccccCCccCCcEEEEeCCCC----CeeeccccccCCCce
Q 040145 232 GNWRTIASMGTNM----A-----S---YDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTD----NWESMAVGLREGWTG 295 (402)
Q Consensus 232 ~~W~~~~~~~~~~----~-----~---~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~----~W~~~~~~~~~~~~~ 295 (402)
++-.....+|.+. . + ...++-++-|.++=...+. ...-.+-..|+.+- +|..- .+....+
T Consensus 104 ~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~-~g~ivvSkLnp~tL~ve~tW~T~---~~k~sa~ 179 (255)
T smart00284 104 ETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQN-AGKIVISKLNPATLTIENTWITT---YNKRSAS 179 (255)
T ss_pred CcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCC-CCCEEEEeeCcccceEEEEEEcC---CCccccc
Confidence 8865444444332 1 1 1122323334333221111 01113456777654 56551 3333344
Q ss_pred eEEEECCEEEEEeccC---CcEEEEEeCCCCceeecCCCCCCccccCCeEEEE---eCCEEEEEec
Q 040145 296 SSVVVYEHLFVVSELE---RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA---CDCRVYVVGR 355 (402)
Q Consensus 296 ~~~~~~~~l~~~gg~~---~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~---~~~~i~v~GG 355 (402)
-+.++-|.||++-... ....+.||..+++=..+ .++.+.. ....+++- -+.+||+.--
T Consensus 180 naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~-~i~f~n~-y~~~s~l~YNP~d~~LY~wdn 243 (255)
T smart00284 180 NAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHL-DIPFENM-YEYISMLDYNPNDRKLYAWNN 243 (255)
T ss_pred ccEEEeeEEEEEccCCCCCcEEEEEEECCCCcccee-eeeeccc-cccceeceeCCCCCeEEEEeC
Confidence 4456778999996322 34688999998753322 2344432 22334443 3567887653
No 128
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=91.72 E-value=9.9 Score=34.42 Aligned_cols=194 Identities=10% Similarity=0.140 Sum_probs=85.8
Q ss_pred CCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC--CceeecCC-Cccc-ccc-eEEE
Q 040145 128 HYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK--NRWTVMNK-MITA-RSF-FASG 202 (402)
Q Consensus 128 ~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t--~~W~~~~~-~~~~-r~~-~~~~ 202 (402)
...|+.+. ++.. ..+..+.+...+.-|++|-. .. +|-... .+|+.... ...+ ... ..+.
T Consensus 5 ~~~W~~v~-l~t~-----~~l~dV~F~d~~~G~~VG~~---------g~-il~T~DGG~tW~~~~~~~~~~~~~~l~~I~ 68 (302)
T PF14870_consen 5 GNSWQQVS-LPTD-----KPLLDVAFVDPNHGWAVGAY---------GT-ILKTTDGGKTWQPVSLDLDNPFDYHLNSIS 68 (302)
T ss_dssp S--EEEEE--S-S-----S-EEEEEESSSS-EEEEETT---------TE-EEEESSTTSS-EE-----S-----EEEEEE
T ss_pred CCCcEEee-cCCC-----CceEEEEEecCCEEEEEecC---------CE-EEEECCCCccccccccCCCccceeeEEEEE
Confidence 45687765 2211 22444444456788888753 12 233322 37988653 2222 222 2444
Q ss_pred EECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcC-CCCCCCcceeEEEE-CCEEEEEcccccCCccCCcEEEEeCCCC
Q 040145 203 VIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIA-SMGTNMASYDAAVL-DGKLLVTEGWLWPFFVSPRGQVYDPSTD 280 (402)
Q Consensus 203 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~-~~~~~~~~~~~~~~-~g~ly~~gG~~~~~~~~~~~~~yd~~~~ 280 (402)
..++..|++|.. ..++.-.=.-.+|++++ +.+.+........+ ++.+++++.. ..++.-.-.-.
T Consensus 69 f~~~~g~ivG~~-------g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~ 134 (302)
T PF14870_consen 69 FDGNEGWIVGEP-------GLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR-------GAIYRTTDGGK 134 (302)
T ss_dssp EETTEEEEEEET-------TEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT---------EEEESSTTS
T ss_pred ecCCceEEEcCC-------ceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC-------CcEEEeCCCCC
Confidence 567888988742 22232222456799985 22233333333333 5666666543 14555555667
Q ss_pred CeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEec
Q 040145 281 NWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGR 355 (402)
Q Consensus 281 ~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG 355 (402)
+|+.+..............-+|++++++. .++-....|+....|.... .+...|...-....++.|+++.-
T Consensus 135 tW~~~~~~~~gs~~~~~r~~dG~~vavs~-~G~~~~s~~~G~~~w~~~~---r~~~~riq~~gf~~~~~lw~~~~ 205 (302)
T PF14870_consen 135 TWQAVVSETSGSINDITRSSDGRYVAVSS-RGNFYSSWDPGQTTWQPHN---RNSSRRIQSMGFSPDGNLWMLAR 205 (302)
T ss_dssp SEEEEE-S----EEEEEE-TTS-EEEEET-TSSEEEEE-TT-SS-EEEE-----SSS-EEEEEE-TTS-EEEEET
T ss_pred CeeEcccCCcceeEeEEECCCCcEEEEEC-cccEEEEecCCCccceEEc---cCccceehhceecCCCCEEEEeC
Confidence 89987653332222212234667666654 3666778899988999886 22222444344456778888764
No 129
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.44 E-value=16 Score=37.80 Aligned_cols=31 Identities=19% Similarity=0.462 Sum_probs=22.9
Q ss_pred cCCEEEEEeCccCCCCCCCceEEEEECCCCc--eeecCCCc
Q 040145 155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVMNKMI 193 (402)
Q Consensus 155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~~~~~ 193 (402)
.++.||+... .+.++.+|..|++ |+.-+..+
T Consensus 193 vgg~lYv~t~--------~~~V~ALDa~TGk~lW~~d~~~~ 225 (764)
T TIGR03074 193 VGDTLYLCTP--------HNKVIALDAATGKEKWKFDPKLK 225 (764)
T ss_pred ECCEEEEECC--------CCeEEEEECCCCcEEEEEcCCCC
Confidence 3999999854 3479999999885 88765443
No 130
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.31 E-value=13 Score=35.12 Aligned_cols=192 Identities=11% Similarity=0.096 Sum_probs=90.9
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECC-CCceeecCCCc-ccccceEEEEEC-CEEEEEcCCCCCCCCCCeeEEEcCCCC
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQ-KNRWTVMNKMI-TARSFFASGVIG-GMIYVAGGSSADLFELDSAEVLDPVKG 232 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~-t~~W~~~~~~~-~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~ 232 (402)
++..|++|-. .+...... -.+|++++..+ .+........++ +.++++|. ...++.=+-.-.
T Consensus 146 ~~~g~~vG~~---------G~il~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~-------~G~v~~S~D~G~ 209 (398)
T PLN00033 146 GKEGWIIGKP---------AILLHTSDGGETWERIPLSPKLPGEPVLIKATGPKSAEMVTD-------EGAIYVTSNAGR 209 (398)
T ss_pred CCEEEEEcCc---------eEEEEEcCCCCCceECccccCCCCCceEEEEECCCceEEEec-------cceEEEECCCCC
Confidence 6778887642 12222222 34799875321 122223333443 45777763 223444333345
Q ss_pred cEEEcCCCC----CCC--------------cceeEEE-ECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCC
Q 040145 233 NWRTIASMG----TNM--------------ASYDAAV-LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGW 293 (402)
Q Consensus 233 ~W~~~~~~~----~~~--------------~~~~~~~-~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~ 293 (402)
+|+.+...+ ..+ ....... -++.++++|-.. +-+...|.....|+.+..+.+...
T Consensus 210 tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G------~~~~s~d~G~~~W~~~~~~~~~~l 283 (398)
T PLN00033 210 NWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRG------NFYLTWEPGQPYWQPHNRASARRI 283 (398)
T ss_pred CceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECCc------cEEEecCCCCcceEEecCCCccce
Confidence 798762111 110 0011111 245555555421 122234444445998876444444
Q ss_pred ceeEEEECCEEEEEeccCCcEEEEEeCCCCc-----eeecCCCCCCccccCCeEEE-EeCCEEEEEecCceeeeEEEEec
Q 040145 294 TGSSVVVYEHLFVVSELERMKLKVYDPSTDS-----WETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLHVAVGHITRL 367 (402)
Q Consensus 294 ~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~-----W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~~~~~v~~~ 367 (402)
.......++.++++|... .+++-+-.... |.++. .+.......++. ..++.++++|... .++.-
T Consensus 284 ~~v~~~~dg~l~l~g~~G--~l~~S~d~G~~~~~~~f~~~~---~~~~~~~l~~v~~~~d~~~~a~G~~G-----~v~~s 353 (398)
T PLN00033 284 QNMGWRADGGLWLLTRGG--GLYVSKGTGLTEEDFDFEEAD---IKSRGFGILDVGYRSKKEAWAAGGSG-----ILLRS 353 (398)
T ss_pred eeeeEcCCCCEEEEeCCc--eEEEecCCCCcccccceeecc---cCCCCcceEEEEEcCCCcEEEEECCC-----cEEEe
Confidence 444445688899886542 44444444444 45443 221111122333 3467888888742 23443
Q ss_pred ccccccCceeeeEEEEeC
Q 040145 368 STSEKKWSFSVQWQVVDA 385 (402)
Q Consensus 368 ~~~~~~~~~~~~W~~~~~ 385 (402)
...-+ +|++...
T Consensus 354 ~D~G~------tW~~~~~ 365 (398)
T PLN00033 354 TDGGK------SWKRDKG 365 (398)
T ss_pred CCCCc------ceeEccc
Confidence 33333 6777653
No 131
>smart00284 OLF Olfactomedin-like domains.
Probab=91.19 E-value=9.8 Score=33.36 Aligned_cols=158 Identities=16% Similarity=0.139 Sum_probs=84.2
Q ss_pred CCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccc----c--------cceEEEEECCEEEEEcC
Q 040145 146 HGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITA----R--------SFFASGVIGGMIYVAGG 213 (402)
Q Consensus 146 ~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~----r--------~~~~~~~~~~~iyv~GG 213 (402)
.+-+.++. +|.+|.--. .+..+..||..+++-.....+|.+ + ...-.++-.+-|+|+=.
T Consensus 75 ~GtG~VVY--ngslYY~~~-------~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYa 145 (255)
T smart00284 75 QGTGVVVY--NGSLYFNKF-------NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYA 145 (255)
T ss_pred ccccEEEE--CceEEEEec-------CCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEe
Confidence 33444544 888888543 246899999999975432223221 1 11233343455666644
Q ss_pred CCCCCCCCCeeEEEcCCCC----cEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccc
Q 040145 214 SSADLFELDSAEVLDPVKG----NWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGL 289 (402)
Q Consensus 214 ~~~~~~~~~~~~~yd~~t~----~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~ 289 (402)
..+... .--+-..||.|- +|.. ..+... ...+.++=|.||++-..... ...-.++||+.+++=..+..++
T Consensus 146 t~~~~g-~ivvSkLnp~tL~ve~tW~T--~~~k~s-a~naFmvCGvLY~~~s~~~~--~~~I~yayDt~t~~~~~~~i~f 219 (255)
T smart00284 146 TEQNAG-KIVISKLNPATLTIENTWIT--TYNKRS-ASNAFMICGILYVTRSLGSK--GEKVFYAYDTNTGKEGHLDIPF 219 (255)
T ss_pred ccCCCC-CEEEEeeCcccceEEEEEEc--CCCccc-ccccEEEeeEEEEEccCCCC--CcEEEEEEECCCCccceeeeee
Confidence 322211 223456777654 4665 222221 22344556899998642211 1235789999987754444444
Q ss_pred cCCCceeE-EEE---CCEEEEEeccCCcEEEEEeCC
Q 040145 290 REGWTGSS-VVV---YEHLFVVSELERMKLKVYDPS 321 (402)
Q Consensus 290 ~~~~~~~~-~~~---~~~l~~~gg~~~~~~~~yd~~ 321 (402)
+......+ +-. +.+||+. +......||..
T Consensus 220 ~n~y~~~s~l~YNP~d~~LY~w---dng~~l~Y~v~ 252 (255)
T smart00284 220 ENMYEYISMLDYNPNDRKLYAW---NNGHLVHYDIA 252 (255)
T ss_pred ccccccceeceeCCCCCeEEEE---eCCeEEEEEEE
Confidence 44443333 333 5778877 33356677653
No 132
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.99 E-value=14 Score=34.67 Aligned_cols=149 Identities=17% Similarity=0.191 Sum_probs=83.2
Q ss_pred cCCEEEEEeCccCCCCCCCceEEEEECCCCc--eeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCC
Q 040145 155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKG 232 (402)
Q Consensus 155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 232 (402)
.++.+|+... + ..++.+|+.+++ |+....--..........-+++||+-... ..+++||..++
T Consensus 67 ~dg~v~~~~~---~-----G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~-------g~~y~ld~~~G 131 (370)
T COG1520 67 GDGTVYVGTR---D-----GNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWD-------GKLYALDASTG 131 (370)
T ss_pred eCCeEEEecC---C-----CcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEeccc-------ceEEEEECCCC
Confidence 4888998621 1 179999999987 86633220111111222237787766542 26899999655
Q ss_pred --cEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCC--Ceeecccc-ccCCCceeEEEECCEEEEE
Q 040145 233 --NWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTD--NWESMAVG-LREGWTGSSVVVYEHLFVV 307 (402)
Q Consensus 233 --~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~--~W~~~~~~-~~~~~~~~~~~~~~~l~~~ 307 (402)
.|+.-.... .+..-..++.++.+|+... ...++++|..++ .|+.-... ......+.....++.+|+-
T Consensus 132 ~~~W~~~~~~~-~~~~~~~v~~~~~v~~~s~-------~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~ 203 (370)
T COG1520 132 TLVWSRNVGGS-PYYASPPVVGDGTVYVGTD-------DGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVG 203 (370)
T ss_pred cEEEEEecCCC-eEEecCcEEcCcEEEEecC-------CCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEe
Confidence 487543332 2222334455777777531 136788888765 58743321 2222222224566777664
Q ss_pred eccC-CcEEEEEeCCCC--ceee
Q 040145 308 SELE-RMKLKVYDPSTD--SWET 327 (402)
Q Consensus 308 gg~~-~~~~~~yd~~~~--~W~~ 327 (402)
..+ ...++.+|+++. .|..
T Consensus 204 -~~~~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 204 -SDGYDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred -cCCCcceEEEEEccCCcEeeee
Confidence 221 236889999765 5874
No 133
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=90.95 E-value=7.5 Score=31.60 Aligned_cols=82 Identities=17% Similarity=0.114 Sum_probs=50.2
Q ss_pred EEECCEEEEEcccccCCccCCcEEEEeCCCCCe-eeccccccCC-Cce-eE--EEECCEEEEEeccC---CcEEEEEeC-
Q 040145 250 AVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNW-ESMAVGLREG-WTG-SS--VVVYEHLFVVSELE---RMKLKVYDP- 320 (402)
Q Consensus 250 ~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~~-~~~-~~--~~~~~~l~~~gg~~---~~~~~~yd~- 320 (402)
+.+||.+|-++........ ..+..||+.+.++ ..++.|.... ... .. ++.+++|.++-... ...||+.+-
T Consensus 2 V~vnG~~hW~~~~~~~~~~-~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~ 80 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEK-DFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKY 80 (164)
T ss_pred EEECCEEEeeEEecCCCCc-eEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeee
Confidence 5679999998875433221 1689999999999 6665433222 111 12 23477887774221 357887762
Q ss_pred --CCCceeecCCCC
Q 040145 321 --STDSWETIEGPP 332 (402)
Q Consensus 321 --~~~~W~~~~~~~ 332 (402)
....|+++-.++
T Consensus 81 ~~~~~SWtK~~~i~ 94 (164)
T PF07734_consen 81 GYGKESWTKLFTID 94 (164)
T ss_pred ccCcceEEEEEEEe
Confidence 367899875433
No 134
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=90.82 E-value=1.1 Score=40.81 Aligned_cols=243 Identities=14% Similarity=0.112 Sum_probs=105.8
Q ss_pred CCCeEEEEEEe-----CCCCceeEEEeecCCCcEEeCCCCCCC-CCCC-CCCceEEEEccCCEEEEEeCccCCCCCCCce
Q 040145 103 KDPWLFVFAFH-----KCTGKIQWQVLDLTHYCWHTIPAMPCK-DKVC-PHGFRCVSIPREGTLFVCGGMVSDVDCPLDL 175 (402)
Q Consensus 103 ~~~~l~~~gg~-----~~~~~~~~~~~d~~~~~W~~l~~~~~~-~~~~-~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~ 175 (402)
.+..+|+.... .+....-+.+||+.+-+-..--.+|.+ +... ...........+..+||.-= .+..+
T Consensus 46 dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~------TPa~S 119 (342)
T PF06433_consen 46 DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNF------TPATS 119 (342)
T ss_dssp TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEE------SSSEE
T ss_pred CCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEcc------CCCCe
Confidence 46667776531 123334467899998864332223322 2111 11222222223446666532 46779
Q ss_pred EEEEECCCCceeecCCC-------cccccceEEEEECCEE-EEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcce
Q 040145 176 VLKYEMQKNRWTVMNKM-------ITARSFFASGVIGGMI-YVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASY 247 (402)
Q Consensus 176 ~~~~d~~t~~W~~~~~~-------~~~r~~~~~~~~~~~i-yv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~ 247 (402)
|-+.|...++.-..-+. |.+-..|.+..-+|.+ .+.-+.++... .....+||+..+..-.-+.........
T Consensus 120 VtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~~F~~~~dp~f~~~~~~~~~~~~ 198 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA-QKSTKVFDPDDDPLFEHPAYSRDGGRL 198 (342)
T ss_dssp EEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEE-EEEEEESSTTTS-B-S--EEETTTTEE
T ss_pred EEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEe-EeeccccCCCCcccccccceECCCCeE
Confidence 99999999876432111 1221123322223333 22222222222 334467777765432221111111122
Q ss_pred eEEEECCEEEEE--cccccCCccCCcEEEEeCCCCCeeeccc-----c-ccCCCceeEEE-ECCEEEEEe---ccC----
Q 040145 248 DAAVLDGKLLVT--EGWLWPFFVSPRGQVYDPSTDNWESMAV-----G-LREGWTGSSVV-VYEHLFVVS---ELE---- 311 (402)
Q Consensus 248 ~~~~~~g~ly~~--gG~~~~~~~~~~~~~yd~~~~~W~~~~~-----~-~~~~~~~~~~~-~~~~l~~~g---g~~---- 311 (402)
.-..++|.+|-+ +|.. + .+ ...|+.+.. . .|.++.-.++. -.++||+.- +..
T Consensus 199 ~F~Sy~G~v~~~dlsg~~--------~-~~---~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKd 266 (342)
T PF06433_consen 199 YFVSYEGNVYSADLSGDS--------A-KF---GKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKD 266 (342)
T ss_dssp EEEBTTSEEEEEEETTSS--------E-EE---EEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS
T ss_pred EEEecCCEEEEEeccCCc--------c-cc---cCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccC
Confidence 234557777763 3311 1 00 113443321 1 12333323322 368899872 211
Q ss_pred -CcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCE--EEEEecCceeeeEEEEecccccc
Q 040145 312 -RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCR--VYVVGRNLHVAVGHITRLSTSEK 372 (402)
Q Consensus 312 -~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~--i~v~GG~~~~~~~~v~~~~~~~~ 372 (402)
+..||+||+++.+ ++.-+++... ...-.+..+++ ||.+-+.+ +++.+||....
T Consensus 267 pgteVWv~D~~t~k--rv~Ri~l~~~--~~Si~Vsqd~~P~L~~~~~~~----~~l~v~D~~tG 322 (342)
T PF06433_consen 267 PGTEVWVYDLKTHK--RVARIPLEHP--IDSIAVSQDDKPLLYALSAGD----GTLDVYDAATG 322 (342)
T ss_dssp -EEEEEEEETTTTE--EEEEEEEEEE--ESEEEEESSSS-EEEEEETTT----TEEEEEETTT-
T ss_pred CceEEEEEECCCCe--EEEEEeCCCc--cceEEEccCCCcEEEEEcCCC----CeEEEEeCcCC
Confidence 4589999999985 3332233321 11122233444 55453422 34777776543
No 135
>PRK01742 tolB translocation protein TolB; Provisional
Probab=90.63 E-value=16 Score=34.98 Aligned_cols=161 Identities=12% Similarity=0.065 Sum_probs=79.8
Q ss_pred ceEEEEECCCCceeecCCCcccccceEEEE-ECC-EEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEE
Q 040145 174 DLVLKYEMQKNRWTVMNKMITARSFFASGV-IGG-MIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAV 251 (402)
Q Consensus 174 ~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~ 251 (402)
..++++|..++.-+.+...+... ..... -++ +|++....++ ...++.+|..++..+.+..-... .......
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~~--~~~~wSPDG~~La~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~-~~~~~wS 300 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGHN--GAPAFSPDGSRLAFASSKDG----VLNIYVMGANGGTPSQLTSGAGN-NTEPSWS 300 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCcc--CceeECCCCCEEEEEEecCC----cEEEEEEECCCCCeEeeccCCCC-cCCEEEC
Confidence 47999999888766555433211 12222 244 4544433222 24588889888776665432211 1111222
Q ss_pred ECCE-EEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCceeecCC
Q 040145 252 LDGK-LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEG 330 (402)
Q Consensus 252 ~~g~-ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~ 330 (402)
-+|+ |++.....+ ...++.+|..++.-..+.. .. ......-+|+.+++.+. ..++.+|..+..+..+..
T Consensus 301 pDG~~i~f~s~~~g----~~~I~~~~~~~~~~~~l~~---~~-~~~~~SpDG~~ia~~~~--~~i~~~Dl~~g~~~~lt~ 370 (429)
T PRK01742 301 PDGQSILFTSDRSG----SPQVYRMSASGGGASLVGG---RG-YSAQISADGKTLVMING--DNVVKQDLTSGSTEVLSS 370 (429)
T ss_pred CCCCEEEEEECCCC----CceEEEEECCCCCeEEecC---CC-CCccCCCCCCEEEEEcC--CCEEEEECCCCCeEEecC
Confidence 3555 555433221 1356777765553333321 11 11222335554444332 357789999888876642
Q ss_pred CCCCccccCCeEEEEeCCEEEEEecC
Q 040145 331 PPLPEQICKPFAVNACDCRVYVVGRN 356 (402)
Q Consensus 331 ~~~p~~~~~~~~~~~~~~~i~v~GG~ 356 (402)
.. .........+++.+++++.
T Consensus 371 -~~----~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 371 -TF----LDESPSISPNGIMIIYSST 391 (429)
T ss_pred -CC----CCCCceECCCCCEEEEEEc
Confidence 11 1112234557777776654
No 136
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=89.93 E-value=18 Score=34.34 Aligned_cols=181 Identities=12% Similarity=-0.014 Sum_probs=91.3
Q ss_pred eeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccccc
Q 040145 119 IQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARS 197 (402)
Q Consensus 119 ~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~ 197 (402)
..++++|..+++...+...... ... .....++ .|++..... ...+++.+|..++..+.+........
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~------~~~-~~~spDg~~l~~~~~~~-----~~~~i~~~d~~~~~~~~l~~~~~~~~ 281 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGM------NGA-PAFSPDGSKLAVSLSKD-----GNPDIYVMDLDGKQLTRLTNGPGIDT 281 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCC------ccc-eEECCCCCEEEEEECCC-----CCccEEEEECCCCCEEECCCCCCCCC
Confidence 4678888888766555433311 112 2222344 566554331 23479999999988777654322111
Q ss_pred ceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeE-EEECCEEEEEcccccCCccCCcEEEEe
Q 040145 198 FFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDA-AVLDGKLLVTEGWLWPFFVSPRGQVYD 276 (402)
Q Consensus 198 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~-~~~~g~ly~~gG~~~~~~~~~~~~~yd 276 (402)
......-+.+|++.....+ ...++++|..++.++.+.... ...... ..-+|+.+++...... ...++.+|
T Consensus 282 ~~~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~--~~~~~~~~spdg~~i~~~~~~~~---~~~i~~~d 352 (417)
T TIGR02800 282 EPSWSPDGKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRG--GYNASPSWSPDGDLIAFVHREGG---GFNIAVMD 352 (417)
T ss_pred CEEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC--CCccCeEECCCCCEEEEEEccCC---ceEEEEEe
Confidence 1111112335555443222 347899999888877654221 111122 2235665555443221 23689999
Q ss_pred CCCCCeeeccccccCCCceeEEEECCEEEEEeccC--CcEEEEEeCCC
Q 040145 277 PSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELE--RMKLKVYDPST 322 (402)
Q Consensus 277 ~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~--~~~~~~yd~~~ 322 (402)
+.++.++.+.... . .......-+++.+++.... ...+++++...
T Consensus 353 ~~~~~~~~l~~~~-~-~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 353 LDGGGERVLTDTG-L-DESPSFAPNGRMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred CCCCCeEEccCCC-C-CCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence 9887776665311 1 1122233355544443322 23566666544
No 137
>PRK03629 tolB translocation protein TolB; Provisional
Probab=89.86 E-value=19 Score=34.55 Aligned_cols=183 Identities=9% Similarity=-0.032 Sum_probs=91.7
Q ss_pred eeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccccc
Q 040145 119 IQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARS 197 (402)
Q Consensus 119 ~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~ 197 (402)
..++.+|..+++-..+...+. .........+| .|++..... ...+++++|..+++.+++..-.....
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~-------~~~~~~~SPDG~~La~~~~~~-----g~~~I~~~d~~tg~~~~lt~~~~~~~ 290 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPR-------HNGAPAFSPDGSKLAFALSKT-----GSLNLYVMDLASGQIRQVTDGRSNNT 290 (429)
T ss_pred cEEEEEECCCCCeEEccCCCC-------CcCCeEECCCCCEEEEEEcCC-----CCcEEEEEECCCCCEEEccCCCCCcC
Confidence 356677777666555544431 11122333344 455543321 23369999999988777654322111
Q ss_pred ceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeC
Q 040145 198 FFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDP 277 (402)
Q Consensus 198 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~ 277 (402)
......-+..|+......+ ...++.+|..++.-+.+..... ........-+|+.+++.+..+. ...++.+|+
T Consensus 291 ~~~wSPDG~~I~f~s~~~g----~~~Iy~~d~~~g~~~~lt~~~~-~~~~~~~SpDG~~Ia~~~~~~g---~~~I~~~dl 362 (429)
T PRK03629 291 EPTWFPDSQNLAYTSDQAG----RPQVYKVNINGGAPQRITWEGS-QNQDADVSSDGKFMVMVSSNGG---QQHIAKQDL 362 (429)
T ss_pred ceEECCCCCEEEEEeCCCC----CceEEEEECCCCCeEEeecCCC-CccCEEECCCCCEEEEEEccCC---CceEEEEEC
Confidence 1111112334544433221 3468888988876665532111 1111122235554444332211 236889999
Q ss_pred CCCCeeeccccccCCCceeEEEECCEEEEEeccC--CcEEEEEeCCCC
Q 040145 278 STDNWESMAVGLREGWTGSSVVVYEHLFVVSELE--RMKLKVYDPSTD 323 (402)
Q Consensus 278 ~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~--~~~~~~yd~~~~ 323 (402)
.++.++.+.... ........-+|+.+++.+.. ...++..+.+..
T Consensus 363 ~~g~~~~Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 363 ATGGVQVLTDTF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred CCCCeEEeCCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 999888776421 11122344577766665543 234566666543
No 138
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=89.55 E-value=19 Score=34.16 Aligned_cols=139 Identities=15% Similarity=0.095 Sum_probs=76.9
Q ss_pred eEEEEECCCCceeecC-CCcccccc------------eEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCC
Q 040145 175 LVLKYEMQKNRWTVMN-KMITARSF------------FASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMG 241 (402)
Q Consensus 175 ~~~~~d~~t~~W~~~~-~~~~~r~~------------~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 241 (402)
++|.|||.|..-+++. .+|..|.. --.+.+++..++.-. ...+++.++-.+---.++...
T Consensus 288 dIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-------RGkaFi~~~~~~~~iqv~~~~ 360 (668)
T COG4946 288 DIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-------RGKAFIMRPWDGYSIQVGKKG 360 (668)
T ss_pred cEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-------cCcEEEECCCCCeeEEcCCCC
Confidence 7999999999877753 22322211 112333444333322 334666666555444444333
Q ss_pred CCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCC
Q 040145 242 TNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPS 321 (402)
Q Consensus 242 ~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~ 321 (402)
.-|+.+ ...++.-.++|-.++ ..+.+||..+..-..+..++.. -....+.-+|+-.+++. +...+|++|.+
T Consensus 361 ~VrY~r--~~~~~e~~vigt~dg-----D~l~iyd~~~~e~kr~e~~lg~-I~av~vs~dGK~~vvaN-dr~el~vidid 431 (668)
T COG4946 361 GVRYRR--IQVDPEGDVIGTNDG-----DKLGIYDKDGGEVKRIEKDLGN-IEAVKVSPDGKKVVVAN-DRFELWVIDID 431 (668)
T ss_pred ceEEEE--EccCCcceEEeccCC-----ceEEEEecCCceEEEeeCCccc-eEEEEEcCCCcEEEEEc-CceEEEEEEec
Confidence 333322 222334455665443 3788999999887777653322 12222445677666544 47789999998
Q ss_pred CCceeecC
Q 040145 322 TDSWETIE 329 (402)
Q Consensus 322 ~~~W~~~~ 329 (402)
+..=+.+.
T Consensus 432 ngnv~~id 439 (668)
T COG4946 432 NGNVRLID 439 (668)
T ss_pred CCCeeEec
Confidence 88766554
No 139
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=89.55 E-value=25 Score=35.50 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=28.7
Q ss_pred CCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceee
Q 040145 146 HGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTV 188 (402)
Q Consensus 146 ~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~ 188 (402)
..|.++++...|.|++.|+.+ .-++++++..|++-..
T Consensus 436 ~QfscvavD~sGelV~AG~~d------~F~IfvWS~qTGqllD 472 (893)
T KOG0291|consen 436 IQFSCVAVDPSGELVCAGAQD------SFEIFVWSVQTGQLLD 472 (893)
T ss_pred eeeeEEEEcCCCCEEEeeccc------eEEEEEEEeecCeeee
Confidence 568888885559999999874 3489999999997544
No 140
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.45 E-value=21 Score=34.54 Aligned_cols=193 Identities=13% Similarity=0.139 Sum_probs=98.0
Q ss_pred eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCC-c-eeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeE
Q 040145 149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKN-R-WTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAE 225 (402)
Q Consensus 149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~-~-W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~ 225 (402)
..+.+..++++.+.|.. -..+.+||...+ . -+.+....... ++++.. .+.+++.|+. -.++.
T Consensus 207 ~~~~fs~d~~~l~s~s~-------D~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~------D~tvr 271 (456)
T KOG0266|consen 207 SDVAFSPDGSYLLSGSD-------DKTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSD------DGTVR 271 (456)
T ss_pred eeeEECCCCcEEEEecC-------CceEEEeeccCCCeEEEEecCCCCce--EEEEecCCCCEEEEecC------CCcEE
Confidence 33444456665555443 227888998433 2 33344333333 333332 4578888886 45688
Q ss_pred EEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCee---eccccccCC-CceeEEE
Q 040145 226 VLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWE---SMAVGLREG-WTGSSVV 299 (402)
Q Consensus 226 ~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~---~~~~~~~~~-~~~~~~~ 299 (402)
++|..+.+-.. .+........++.+ ++.+++.+..+ ..+.+||..++.-. .+.. .... ....+..
T Consensus 272 iWd~~~~~~~~--~l~~hs~~is~~~f~~d~~~l~s~s~d------~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~f 342 (456)
T KOG0266|consen 272 IWDVRTGECVR--KLKGHSDGISGLAFSPDGNLLVSASYD------GTIRVWDLETGSKLCLKLLSG-AENSAPVTSVQF 342 (456)
T ss_pred EEeccCCeEEE--eeeccCCceEEEEECCCCCEEEEcCCC------ccEEEEECCCCceeeeecccC-CCCCCceeEEEE
Confidence 99998854322 22222223333333 67777777643 36899999887743 2222 1111 1222233
Q ss_pred ECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEE-EeCCEEEEEecCceeeeEEEEecccc
Q 040145 300 VYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLHVAVGHITRLSTS 370 (402)
Q Consensus 300 ~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~~~~~v~~~~~~ 370 (402)
..+-.|++.+.....+..||.....-...-. ......+..+..+ ..+++..+.|+.+.. |+.+|+.
T Consensus 343 sp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~sg~~d~~----v~~~~~~ 409 (456)
T KOG0266|consen 343 SPNGKYLLSASLDRTLKLWDLRSGKSVGTYT-GHSNLVRCIFSPTLSTGGKLIYSGSEDGS----VYVWDSS 409 (456)
T ss_pred CCCCcEEEEecCCCeEEEEEccCCcceeeec-ccCCcceeEecccccCCCCeEEEEeCCce----EEEEeCC
Confidence 3444455555556678888887542221110 1111112333333 446677777775544 5555543
No 141
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=89.17 E-value=16 Score=32.60 Aligned_cols=131 Identities=15% Similarity=0.197 Sum_probs=69.5
Q ss_pred eEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECC
Q 040145 175 LVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDG 254 (402)
Q Consensus 175 ~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g 254 (402)
++..||..++.-+. .+...-.-..++..+..-.+.||. -..+-.||..++.=..+..--.+-....-. ...
T Consensus 36 slrlYdv~~~~l~~--~~~~~~plL~c~F~d~~~~~~G~~------dg~vr~~Dln~~~~~~igth~~~i~ci~~~-~~~ 106 (323)
T KOG1036|consen 36 SLRLYDVPANSLKL--KFKHGAPLLDCAFADESTIVTGGL------DGQVRRYDLNTGNEDQIGTHDEGIRCIEYS-YEV 106 (323)
T ss_pred cEEEEeccchhhhh--heecCCceeeeeccCCceEEEecc------CceEEEEEecCCcceeeccCCCceEEEEee-ccC
Confidence 68889988873221 111111123445556666677776 446889999988766554322221111111 122
Q ss_pred EEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCc
Q 040145 255 KLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 255 ~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
...+.||++ ..+..+|+....=. .. ....-.-.+..+.|..+++|.. ...+.+||+.+..
T Consensus 107 ~~vIsgsWD------~~ik~wD~R~~~~~--~~-~d~~kkVy~~~v~g~~LvVg~~-~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 107 GCVISGSWD------KTIKFWDPRNKVVV--GT-FDQGKKVYCMDVSGNRLVVGTS-DRKVLIYDLRNLD 166 (323)
T ss_pred CeEEEcccC------ccEEEEeccccccc--cc-cccCceEEEEeccCCEEEEeec-CceEEEEEccccc
Confidence 334667764 36778887652110 00 1111111223456666777665 5689999998653
No 142
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=89.07 E-value=12 Score=33.98 Aligned_cols=182 Identities=13% Similarity=0.069 Sum_probs=96.1
Q ss_pred EEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEE----ECCEEEEEcCCCCCCCCCCeeEE
Q 040145 151 VSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGV----IGGMIYVAGGSSADLFELDSAEV 226 (402)
Q Consensus 151 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~~ 226 (402)
.++-.+.++.+.|.. -+.+.++|..|+.- +. .-..|+-++ +++.+.+.... -.++.+
T Consensus 241 LCLqyd~rviisGSS-------DsTvrvWDv~tge~-----l~-tlihHceaVLhlrf~ng~mvtcSk------DrsiaV 301 (499)
T KOG0281|consen 241 LCLQYDERVIVSGSS-------DSTVRVWDVNTGEP-----LN-TLIHHCEAVLHLRFSNGYMVTCSK------DRSIAV 301 (499)
T ss_pred EeeeccceEEEecCC-------CceEEEEeccCCch-----hh-HHhhhcceeEEEEEeCCEEEEecC------CceeEE
Confidence 344457787777654 34788999988752 11 111222111 22332333222 234555
Q ss_pred EcCCCCcEEEcC---CCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCE
Q 040145 227 LDPVKGNWRTIA---SMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEH 303 (402)
Q Consensus 227 yd~~t~~W~~~~---~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ 303 (402)
+|..+-+ .+. -+-..|.....+-+++++.+.... ...+-+++..+...-.+-. ...+.-+++.++|+
T Consensus 302 Wdm~sps--~it~rrVLvGHrAaVNvVdfd~kyIVsASg------DRTikvW~~st~efvRtl~--gHkRGIAClQYr~r 371 (499)
T KOG0281|consen 302 WDMASPT--DITLRRVLVGHRAAVNVVDFDDKYIVSASG------DRTIKVWSTSTCEFVRTLN--GHKRGIACLQYRDR 371 (499)
T ss_pred EeccCch--HHHHHHHHhhhhhheeeeccccceEEEecC------CceEEEEeccceeeehhhh--cccccceehhccCe
Confidence 5554332 111 122334444555668884443322 2367888888877654422 22222233578999
Q ss_pred EEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEeccc
Q 040145 304 LFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 304 l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~ 369 (402)
+.+-|. +.+.|..+|.+...--.+-. -- -.-..++-++++=.|-||++.. ..||.+..
T Consensus 372 lvVSGS-SDntIRlwdi~~G~cLRvLe--GH---EeLvRciRFd~krIVSGaYDGk--ikvWdl~a 429 (499)
T KOG0281|consen 372 LVVSGS-SDNTIRLWDIECGACLRVLE--GH---EELVRCIRFDNKRIVSGAYDGK--IKVWDLQA 429 (499)
T ss_pred EEEecC-CCceEEEEeccccHHHHHHh--ch---HHhhhheeecCceeeeccccce--EEEEeccc
Confidence 877655 47789999998776444321 00 0111345567887788887655 45666644
No 143
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=89.01 E-value=13 Score=31.28 Aligned_cols=143 Identities=20% Similarity=0.151 Sum_probs=73.3
Q ss_pred EEEECCEEEEEcCCCCCCCCCCeeEEEcCCCC--cEEEcC----CCCCCCcceeEEEE--CCEEEEEcccccCCccCCcE
Q 040145 201 SGVIGGMIYVAGGSSADLFELDSAEVLDPVKG--NWRTIA----SMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRG 272 (402)
Q Consensus 201 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~----~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~ 272 (402)
+....+++|++-|. .++.++.... .-..+. .+|. .--++... +|++|+|-|. ..
T Consensus 12 ~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~--~IDAa~~~~~~~~~yfFkg~--------~y 73 (194)
T cd00094 12 VTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPS--PVDAAFERPDTGKIYFFKGD--------KY 73 (194)
T ss_pred EEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCC--CccEEEEECCCCEEEEECCC--------EE
Confidence 33446888998763 4566665411 112221 1221 11222232 3899999773 67
Q ss_pred EEEeCCCCCeee---ccc-cccC--CCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceee-----cCC--CCCCccc
Q 040145 273 QVYDPSTDNWES---MAV-GLRE--GWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWET-----IEG--PPLPEQI 337 (402)
Q Consensus 273 ~~yd~~~~~W~~---~~~-~~~~--~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~-----~~~--~~~p~~~ 337 (402)
+.||..+..... +.. ..+. ....++... ++++|++.|. ..++||...++-.. +.. ..+|.
T Consensus 74 w~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~---~y~ry~~~~~~v~~~yP~~i~~~w~g~p~-- 148 (194)
T cd00094 74 WVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD---KYWRYDEKTQKMDPGYPKLIETDFPGVPD-- 148 (194)
T ss_pred EEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC---EEEEEeCCCccccCCCCcchhhcCCCcCC--
Confidence 888876422211 111 1111 111223223 6899999775 79999986654321 110 11332
Q ss_pred cCCeEEEEeCCEEEEEecCceeeeEEEEecccccc
Q 040145 338 CKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEK 372 (402)
Q Consensus 338 ~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~ 372 (402)
...++....++++|++-| ...+.||....
T Consensus 149 ~idaa~~~~~~~~yfF~g------~~y~~~d~~~~ 177 (194)
T cd00094 149 KVDAAFRWLDGYYYFFKG------DQYWRFDPRSK 177 (194)
T ss_pred CcceeEEeCCCcEEEEEC------CEEEEEeCccc
Confidence 122233344489999998 35788876443
No 144
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=88.99 E-value=25 Score=34.76 Aligned_cols=114 Identities=22% Similarity=0.358 Sum_probs=67.7
Q ss_pred EEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCCCCc--------ceeEEEECCEEEEEcccccCCccC
Q 040145 200 ASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGTNMA--------SYDAAVLDGKLLVTEGWLWPFFVS 269 (402)
Q Consensus 200 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~--------~~~~~~~~g~ly~~gG~~~~~~~~ 269 (402)
+.++.++.||+... ...++.+|..|++ |+.-...+.... ....++.+++||+....
T Consensus 64 tPvv~~g~vyv~s~-------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d------- 129 (527)
T TIGR03075 64 QPLVVDGVMYVTTS-------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD------- 129 (527)
T ss_pred CCEEECCEEEEECC-------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC-------
Confidence 34567899998654 3458999998865 876543321111 11235568888874331
Q ss_pred CcEEEEeCCCCC--eeeccccccCC--CceeEEEECCEEEEEeccC----CcEEEEEeCCCC--ceee
Q 040145 270 PRGQVYDPSTDN--WESMAVGLREG--WTGSSVVVYEHLFVVSELE----RMKLKVYDPSTD--SWET 327 (402)
Q Consensus 270 ~~~~~yd~~~~~--W~~~~~~~~~~--~~~~~~~~~~~l~~~gg~~----~~~~~~yd~~~~--~W~~ 327 (402)
..++++|.++++ |+.-....... .....++.++++|+..... ...+..||.++. .|+.
T Consensus 130 g~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 130 ARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred CEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 368999998874 87543212211 1222367788887643211 347888998876 3763
No 145
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=88.97 E-value=19 Score=33.37 Aligned_cols=122 Identities=9% Similarity=-0.054 Sum_probs=66.9
Q ss_pred CCCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCC--CCCCceEEEEE
Q 040145 103 KDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDV--DCPLDLVLKYE 180 (402)
Q Consensus 103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~--~~~~~~~~~~d 180 (402)
...++|+..........++.++|..+.+-...-+....+ + +. ....+..||+......-. ....+.+.+||
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P----~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D 83 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLP----N--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVID 83 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCC----c--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence 356788875332122267999999887654432222111 2 22 332356888886531110 12467899999
Q ss_pred CCCCceee-cCCCccccc-----ceEEEE-ECC-EEEEEcCCCCCCCCCCeeEEEcCCCCcEEE
Q 040145 181 MQKNRWTV-MNKMITARS-----FFASGV-IGG-MIYVAGGSSADLFELDSAEVLDPVKGNWRT 236 (402)
Q Consensus 181 ~~t~~W~~-~~~~~~~r~-----~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 236 (402)
+.|.+-.. ++--+.||. ....+. -+| .+|+.- .+ +.+.+.++|..+++-..
T Consensus 84 ~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n-~~----p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 84 PQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQ-FS----PSPAVGVVDLEGKAFVR 142 (352)
T ss_pred CccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEec-CC----CCCEEEEEECCCCcEEE
Confidence 99987543 332233341 122222 244 566653 11 25779999999987543
No 146
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=88.20 E-value=22 Score=33.17 Aligned_cols=229 Identities=14% Similarity=0.107 Sum_probs=99.5
Q ss_pred CeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEE-eCccCCCCCCCceEEEEECCC
Q 040145 105 PWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVC-GGMVSDVDCPLDLVLKYEMQK 183 (402)
Q Consensus 105 ~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~-GG~~~~~~~~~~~~~~~d~~t 183 (402)
+.-++|.++ .......+.+|..+.+-..|...+.. ..++......+..+|.+ .+. .+...|..|
T Consensus 47 G~kllF~s~-~dg~~nly~lDL~t~~i~QLTdg~g~-----~~~g~~~s~~~~~~~Yv~~~~---------~l~~vdL~T 111 (386)
T PF14583_consen 47 GRKLLFASD-FDGNRNLYLLDLATGEITQLTDGPGD-----NTFGGFLSPDDRALYYVKNGR---------SLRRVDLDT 111 (386)
T ss_dssp S-EEEEEE--TTSS-EEEEEETTT-EEEE---SS-B------TTT-EE-TTSSEEEEEETTT---------EEEEEETTT
T ss_pred CCEEEEEec-cCCCcceEEEEcccCEEEECccCCCC-----CccceEEecCCCeEEEEECCC---------eEEEEECCc
Confidence 333444443 24555689999999999999876532 23444444456676544 332 789999999
Q ss_pred CceeecCCCcccccceEEEEEC--CEEEEEcCC----CC-------------CCCCCCeeEEEcCCCCcEEEcCCCCCCC
Q 040145 184 NRWTVMNKMITARSFFASGVIG--GMIYVAGGS----SA-------------DLFELDSAEVLDPVKGNWRTIASMGTNM 244 (402)
Q Consensus 184 ~~W~~~~~~~~~r~~~~~~~~~--~~iyv~GG~----~~-------------~~~~~~~~~~yd~~t~~W~~~~~~~~~~ 244 (402)
.+-+.+-..|..-......+.+ +.. ++|-. +. ...+...+...|..|++.+.+-.-..-.
T Consensus 112 ~e~~~vy~~p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wl 190 (386)
T PF14583_consen 112 LEERVVYEVPDDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWL 190 (386)
T ss_dssp --EEEEEE--TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-E
T ss_pred CcEEEEEECCcccccccceeeCCCccE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccc
Confidence 8877766665544433333222 222 22211 00 0112456777888888776653211111
Q ss_pred cceeEE-EECCEE--EEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCE-EEEEeccC---CcEEE
Q 040145 245 ASYDAA-VLDGKL--LVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEH-LFVVSELE---RMKLK 316 (402)
Q Consensus 245 ~~~~~~-~~~g~l--y~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~-l~~~gg~~---~~~~~ 316 (402)
+|... -.+..+ ||.-|-- ......++..|........+...++.-..++= -.-+|. |+..+... ..-+.
T Consensus 191 -gH~~fsP~dp~li~fCHEGpw--~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~ 267 (386)
T PF14583_consen 191 -GHVQFSPTDPTLIMFCHEGPW--DLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIA 267 (386)
T ss_dssp -EEEEEETTEEEEEEEEE-S-T--TTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEE
T ss_pred -cCcccCCCCCCEEEEeccCCc--ceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEE
Confidence 11111 113333 3333311 12223788999876665566543332222222 233444 33333221 34688
Q ss_pred EEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCc
Q 040145 317 VYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNL 357 (402)
Q Consensus 317 ~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~ 357 (402)
.||+++..=+.+. ++| ...|=+...+|++++--|++
T Consensus 268 ~~d~~t~~~~~~~--~~p---~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 268 GYDPDTGERRRLM--EMP---WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EE-TTT--EEEEE--EE----SEEEEEE-TTSSEEEEEE--
T ss_pred eeCCCCCCceEEE--eCC---ceeeeEEcCCCCEEEecCCC
Confidence 8899887533333 455 34566777889998877764
No 147
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.11 E-value=16 Score=31.51 Aligned_cols=102 Identities=18% Similarity=0.306 Sum_probs=55.7
Q ss_pred EEEEEcCCCCCCCCCCeeEEEcCCCCcEEEc----------------CCCCCCCcceeEEEECCEEEEEcccccCCccCC
Q 040145 207 MIYVAGGSSADLFELDSAEVLDPVKGNWRTI----------------ASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSP 270 (402)
Q Consensus 207 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~----------------~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~ 270 (402)
+-++.||++. +-.++.||. ++|..- |....++...+++..+|.+++
T Consensus 176 krlvSgGcDn----~VkiW~~~~--~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viI------------ 237 (299)
T KOG1332|consen 176 KRLVSGGCDN----LVKIWKFDS--DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVII------------ 237 (299)
T ss_pred ceeeccCCcc----ceeeeecCC--cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEE------------
Confidence 4578898854 334555554 356432 122234444455555665544
Q ss_pred cEEEEeCCCCCeeecc-ccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCC-CceeecC
Q 040145 271 RGQVYDPSTDNWESMA-VGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPST-DSWETIE 329 (402)
Q Consensus 271 ~~~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~-~~W~~~~ 329 (402)
+.-+.+.+.|+... ...+......+-.+.|.++.++|. .+.+..+-... .+|.++.
T Consensus 238 --wt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~G-dNkvtlwke~~~Gkw~~v~ 295 (299)
T KOG1332|consen 238 --WTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGG-DNKVTLWKENVDGKWEEVG 295 (299)
T ss_pred --EEecCccCcccccccccCCcceEEEEEeccccEEEEecC-CcEEEEEEeCCCCcEEEcc
Confidence 33344556787543 224444444444566777777654 44666665554 4899986
No 148
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=87.69 E-value=17 Score=31.33 Aligned_cols=148 Identities=16% Similarity=0.091 Sum_probs=76.5
Q ss_pred cEEEcCCCCC-----CCcc-eeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEE---ECCE
Q 040145 233 NWRTIASMGT-----NMAS-YDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVV---VYEH 303 (402)
Q Consensus 233 ~W~~~~~~~~-----~~~~-~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~---~~~~ 303 (402)
.|+...++.. |--. +...-..|.|++.||. ..++..|+++++.+..-..... +-++++ .++.
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD-------~~~y~~dlE~G~i~r~~rGHtD--YvH~vv~R~~~~q 170 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD-------GVIYQVDLEDGRIQREYRGHTD--YVHSVVGRNANGQ 170 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCC-------eEEEEEEecCCEEEEEEcCCcc--eeeeeeecccCcc
Confidence 4777665543 2222 2222246788888874 2689999999987765321111 112222 3455
Q ss_pred EEEEeccCCcEEEEEeCCCCceeecCC-CCCCcccc--CCe--EEEEeCCEEEEEecCceeeeEEEEecccccccCceee
Q 040145 304 LFVVSELERMKLKVYDPSTDSWETIEG-PPLPEQIC--KPF--AVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSV 378 (402)
Q Consensus 304 l~~~gg~~~~~~~~yd~~~~~W~~~~~-~~~p~~~~--~~~--~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~ 378 (402)
|+ -|+ ....+.++|.+|.+=..+-. -.-|...| .+- ++...+..-+|.||+-+- .+|-+...+
T Consensus 171 il-sG~-EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~l---slwhLrsse------- 238 (325)
T KOG0649|consen 171 IL-SGA-EDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKL---SLWHLRSSE------- 238 (325)
T ss_pred ee-ecC-CCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCce---eEEeccCCC-------
Confidence 54 244 35578899999876554422 11222112 111 444445556666665433 356654322
Q ss_pred eEEEEeCCCCCCCccccceeEEe
Q 040145 379 QWQVVDAPDNFSDLTPSSSQVLF 401 (402)
Q Consensus 379 ~W~~~~~~~~~~~~~~~~~~~~~ 401 (402)
.=..++.|-..+.......+||+
T Consensus 239 ~t~vfpipa~v~~v~F~~d~vl~ 261 (325)
T KOG0649|consen 239 STCVFPIPARVHLVDFVDDCVLI 261 (325)
T ss_pred ceEEEecccceeEeeeecceEEE
Confidence 11345555555555555555554
No 149
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=87.53 E-value=28 Score=33.69 Aligned_cols=172 Identities=8% Similarity=-0.027 Sum_probs=87.7
Q ss_pred eEEEEECCCCceeecCCCcccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCC-CCcceeEEE
Q 040145 175 LVLKYEMQKNRWTVMNKMITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGT-NMASYDAAV 251 (402)
Q Consensus 175 ~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~-~~~~~~~~~ 251 (402)
.+|.+|-.++.-+.+.++. +...+.+.. +|..+++|-. ...+++||..+.. .+..+.. .....++..
T Consensus 198 ~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~------~g~v~iwD~~~~k--~~~~~~~~h~~rvg~la 267 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTS------DGTVQIWDVKEQK--KTRTLRGSHASRVGSLA 267 (484)
T ss_pred eEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeec------CCeEEEEehhhcc--ccccccCCcCceeEEEe
Confidence 5777777777655555544 333333333 4777777765 4568999987654 2333333 222333444
Q ss_pred ECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE---EEECCEEEEEeccCCcEEEEEeCCCCceeec
Q 040145 252 LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS---VVVYEHLFVVSELERMKLKVYDPSTDSWETI 328 (402)
Q Consensus 252 ~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~---~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~ 328 (402)
.++.+...|... ..+..+|.....=. +.. +.......+ ...++..+.-||. .+.+.+||.....+..-
T Consensus 268 W~~~~lssGsr~------~~I~~~dvR~~~~~-~~~-~~~H~qeVCgLkws~d~~~lASGgn-DN~~~Iwd~~~~~p~~~ 338 (484)
T KOG0305|consen 268 WNSSVLSSGSRD------GKILNHDVRISQHV-VST-LQGHRQEVCGLKWSPDGNQLASGGN-DNVVFIWDGLSPEPKFT 338 (484)
T ss_pred ccCceEEEecCC------CcEEEEEEecchhh-hhh-hhcccceeeeeEECCCCCeeccCCC-ccceEeccCCCccccEE
Confidence 577787877754 25777776543210 000 111111111 2235555555554 67888998833322211
Q ss_pred CCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEec
Q 040145 329 EGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRL 367 (402)
Q Consensus 329 ~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~ 367 (402)
-. .... .-...+-+-....|+..||+....+..+|.-
T Consensus 339 ~~-~H~a-AVKA~awcP~q~~lLAsGGGs~D~~i~fwn~ 375 (484)
T KOG0305|consen 339 FT-EHTA-AVKALAWCPWQSGLLATGGGSADRCIKFWNT 375 (484)
T ss_pred Ee-ccce-eeeEeeeCCCccCceEEcCCCcccEEEEEEc
Confidence 00 0000 0111233345677888888766655444443
No 150
>PLN00181 protein SPA1-RELATED; Provisional
Probab=87.37 E-value=41 Score=35.28 Aligned_cols=143 Identities=13% Similarity=0.056 Sum_probs=71.1
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEE--ECCEEEEEcCCCCCCCCCCeeEEEcCCCCc
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGV--IGGMIYVAGGSSADLFELDSAEVLDPVKGN 233 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 233 (402)
++.+++.|+.+ ..+.+||..++.-. ..+.......++.. -++..++.|+. ...+.+||..+..
T Consensus 587 ~~~~L~Sgs~D-------g~v~iWd~~~~~~~--~~~~~~~~v~~v~~~~~~g~~latgs~------dg~I~iwD~~~~~ 651 (793)
T PLN00181 587 DPTLLASGSDD-------GSVKLWSINQGVSI--GTIKTKANICCVQFPSESGRSLAFGSA------DHKVYYYDLRNPK 651 (793)
T ss_pred CCCEEEEEcCC-------CEEEEEECCCCcEE--EEEecCCCeEEEEEeCCCCCEEEEEeC------CCeEEEEECCCCC
Confidence 56778888763 26889998765321 11111111112222 24677777765 3568899987542
Q ss_pred --EEEcCCCCCCCcc-eeEEEECCEEEEEcccccCCccCCcEEEEeCCCC----CeeeccccccC-CC-ceeEEEECCEE
Q 040145 234 --WRTIASMGTNMAS-YDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTD----NWESMAVGLRE-GW-TGSSVVVYEHL 304 (402)
Q Consensus 234 --W~~~~~~~~~~~~-~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~----~W~~~~~~~~~-~~-~~~~~~~~~~l 304 (402)
...+. ..... ......++..++.|+.+ ..+..||+... .|..+...... .. .......++.+
T Consensus 652 ~~~~~~~---~h~~~V~~v~f~~~~~lvs~s~D------~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~ 722 (793)
T PLN00181 652 LPLCTMI---GHSKTVSYVRFVDSSTLVSSSTD------NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGY 722 (793)
T ss_pred ccceEec---CCCCCEEEEEEeCCCEEEEEECC------CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCE
Confidence 11211 11111 12222366666666643 35778887643 23333221110 11 11112335666
Q ss_pred EEEeccCCcEEEEEeCCCC
Q 040145 305 FVVSELERMKLKVYDPSTD 323 (402)
Q Consensus 305 ~~~gg~~~~~~~~yd~~~~ 323 (402)
++.|+. ...+.+|+....
T Consensus 723 lasgs~-D~~v~iw~~~~~ 740 (793)
T PLN00181 723 IATGSE-TNEVFVYHKAFP 740 (793)
T ss_pred EEEEeC-CCEEEEEECCCC
Confidence 666665 567888887543
No 151
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=87.34 E-value=23 Score=32.27 Aligned_cols=220 Identities=16% Similarity=0.091 Sum_probs=108.0
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK 183 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t 183 (402)
.+.||.+. .....++.||+.+.+-+... .|. ...+...+-.++.|+++.- .+..+++.+
T Consensus 36 ~~~L~w~D----I~~~~i~r~~~~~g~~~~~~-~p~------~~~~~~~~d~~g~Lv~~~~----------g~~~~~~~~ 94 (307)
T COG3386 36 RGALLWVD----ILGGRIHRLDPETGKKRVFP-SPG------GFSSGALIDAGGRLIACEH----------GVRLLDPDT 94 (307)
T ss_pred CCEEEEEe----CCCCeEEEecCCcCceEEEE-CCC------CcccceeecCCCeEEEEcc----------ccEEEeccC
Confidence 34455554 23345788888766544332 120 1112223322445555432 466677755
Q ss_pred Cce-eecCC----CcccccceEEEEECCEEEEEcCC-----CCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEEC
Q 040145 184 NRW-TVMNK----MITARSFFASGVIGGMIYVAGGS-----SADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLD 253 (402)
Q Consensus 184 ~~W-~~~~~----~~~~r~~~~~~~~~~~iyv~GG~-----~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~ 253 (402)
+.- +.+.. .+..|.+=..+.-++.+|+---. .........++.|||. +...++..-......--+..-+
T Consensus 95 ~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~~~~NGla~SpD 173 (307)
T COG3386 95 GGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDDLTIPNGLAFSPD 173 (307)
T ss_pred CceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCcEEecCceEECCC
Confidence 543 55432 33345555555566776664222 1112224579999994 4554442211111111112225
Q ss_pred C-EEEEEcccccCCccCCcEEEEeCCC--C----C--eeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCc
Q 040145 254 G-KLLVTEGWLWPFFVSPRGQVYDPST--D----N--WESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 254 g-~ly~~gG~~~~~~~~~~~~~yd~~~--~----~--W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
+ .+|+.--. .+.+++|+... . . +..... .+..--+.++-.+|.+|+.+..++..+.+|+|+-..
T Consensus 174 g~tly~aDT~------~~~i~r~~~d~~~g~~~~~~~~~~~~~-~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l 246 (307)
T COG3386 174 GKTLYVADTP------ANRIHRYDLDPATGPIGGRRGFVDFDE-EPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKL 246 (307)
T ss_pred CCEEEEEeCC------CCeEEEEecCcccCccCCcceEEEccC-CCCCCCceEEeCCCCEEEecccCCceEEEECCCCcE
Confidence 5 56665332 34677776652 1 1 111111 111223344567899997655555689999998444
Q ss_pred eeecCCCCCCccccCCeEEEEeC---CEEEEEecCc
Q 040145 325 WETIEGPPLPEQICKPFAVNACD---CRVYVVGRNL 357 (402)
Q Consensus 325 W~~~~~~~~p~~~~~~~~~~~~~---~~i~v~GG~~ 357 (402)
-.++ .+|.. ...+++..+ +.|||..-..
T Consensus 247 ~~~i---~lP~~--~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 247 LGEI---KLPVK--RPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred EEEE---ECCCC--CCccceEeCCCcCEEEEEecCC
Confidence 4444 46642 222333333 6788887654
No 152
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=86.92 E-value=22 Score=31.71 Aligned_cols=91 Identities=18% Similarity=0.206 Sum_probs=52.4
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF 199 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~ 199 (402)
.+-.||..+..=..+..-. ..-.++.-......+|.||++. .+.++||.+.. .......+..-+
T Consensus 76 ~vr~~Dln~~~~~~igth~-------~~i~ci~~~~~~~~vIsgsWD~-------~ik~wD~R~~~--~~~~~d~~kkVy 139 (323)
T KOG1036|consen 76 QVRRYDLNTGNEDQIGTHD-------EGIRCIEYSYEVGCVISGSWDK-------TIKFWDPRNKV--VVGTFDQGKKVY 139 (323)
T ss_pred eEEEEEecCCcceeeccCC-------CceEEEEeeccCCeEEEcccCc-------cEEEEeccccc--cccccccCceEE
Confidence 3778999888766654333 1122333323456788899843 68889987621 111222333444
Q ss_pred EEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc
Q 040145 200 ASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN 233 (402)
Q Consensus 200 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 233 (402)
++.+.++. +++|+. -..+.+||+.+..
T Consensus 140 ~~~v~g~~-LvVg~~------~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 140 CMDVSGNR-LVVGTS------DRKVLIYDLRNLD 166 (323)
T ss_pred EEeccCCE-EEEeec------CceEEEEEccccc
Confidence 55555555 455544 4578999997653
No 153
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=86.78 E-value=38 Score=34.27 Aligned_cols=178 Identities=15% Similarity=0.113 Sum_probs=98.9
Q ss_pred CEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEE
Q 040145 157 GTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRT 236 (402)
Q Consensus 157 ~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 236 (402)
|.-..+|+. ....+.+|+-.+.+.---..-...+.......-++.+++.|+.+ ..|-+||..++.-..
T Consensus 319 GDWiA~g~~------klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eD------gKVKvWn~~SgfC~v 386 (893)
T KOG0291|consen 319 GDWIAFGCS------KLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAED------GKVKVWNTQSGFCFV 386 (893)
T ss_pred CCEEEEcCC------ccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCC------CcEEEEeccCceEEE
Confidence 666677764 36688899866655322222112232222333477888888874 346677776643211
Q ss_pred cCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCC-CeeeccccccCCCceeEEEEC--CEEEEEeccC
Q 040145 237 IASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTD-NWESMAVGLREGWTGSSVVVY--EHLFVVSELE 311 (402)
Q Consensus 237 ~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~~~~~~~~~~~--~~l~~~gg~~ 311 (402)
....+-.+++++.+ .|+..+....++ .+-++|+..- .++.... |.+....+++++ |.|.+.|+.+
T Consensus 387 --TFteHts~Vt~v~f~~~g~~llssSLDG------tVRAwDlkRYrNfRTft~--P~p~QfscvavD~sGelV~AG~~d 456 (893)
T KOG0291|consen 387 --TFTEHTSGVTAVQFTARGNVLLSSSLDG------TVRAWDLKRYRNFRTFTS--PEPIQFSCVAVDPSGELVCAGAQD 456 (893)
T ss_pred --EeccCCCceEEEEEEecCCEEEEeecCC------eEEeeeecccceeeeecC--CCceeeeEEEEcCCCCEEEeeccc
Confidence 11222233333322 455544443322 5677887653 3444443 344444455666 9999999998
Q ss_pred CcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCcee
Q 040145 312 RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHV 359 (402)
Q Consensus 312 ~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~ 359 (402)
...|++++.+|.+-..+-.-.-. ....-+....+.+++-|-++++
T Consensus 457 ~F~IfvWS~qTGqllDiLsGHEg---PVs~l~f~~~~~~LaS~SWDkT 501 (893)
T KOG0291|consen 457 SFEIFVWSVQTGQLLDILSGHEG---PVSGLSFSPDGSLLASGSWDKT 501 (893)
T ss_pred eEEEEEEEeecCeeeehhcCCCC---cceeeEEccccCeEEeccccce
Confidence 88999999999876654311111 1111233456667777777655
No 154
>PRK02889 tolB translocation protein TolB; Provisional
Probab=86.63 E-value=31 Score=33.09 Aligned_cols=179 Identities=13% Similarity=0.032 Sum_probs=88.2
Q ss_pred CceEEEEECCCCceeecCCCcccccceEEEE-ECC-EEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEE
Q 040145 173 LDLVLKYEMQKNRWTVMNKMITARSFFASGV-IGG-MIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAA 250 (402)
Q Consensus 173 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~ 250 (402)
...++++|..+++=+.+...+... ..... -++ +|++....++ ...++.+|..++..+.+..-... ......
T Consensus 219 ~~~I~~~dl~~g~~~~l~~~~g~~--~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~-~~~~~w 291 (427)
T PRK02889 219 KPVVYVHDLATGRRRVVANFKGSN--SAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQSSGI-DTEPFF 291 (427)
T ss_pred CcEEEEEECCCCCEEEeecCCCCc--cceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCCCCCC-CcCeEE
Confidence 347999999988755554433211 12222 233 5555443322 35788888887776665332211 111122
Q ss_pred EECCE-EEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccC--CcEEEEEeCCCCceee
Q 040145 251 VLDGK-LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELE--RMKLKVYDPSTDSWET 327 (402)
Q Consensus 251 ~~~g~-ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~--~~~~~~yd~~~~~W~~ 327 (402)
.-+|+ |++.....+ ...++.+|..++..+.+... ..........-+|+.+++.... ...++++|..+.+.+.
T Consensus 292 SpDG~~l~f~s~~~g----~~~Iy~~~~~~g~~~~lt~~-g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~ 366 (427)
T PRK02889 292 SPDGRSIYFTSDRGG----APQIYRMPASGGAAQRVTFT-GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA 366 (427)
T ss_pred cCCCCEEEEEecCCC----CcEEEEEECCCCceEEEecC-CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE
Confidence 23565 544432211 23688888877776665421 1111112223355544343322 2479999998887776
Q ss_pred cCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEeccc
Q 040145 328 IEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 328 ~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~ 369 (402)
+... . ....-....+++.+++...... ...++.++.
T Consensus 367 lt~~--~---~~~~p~~spdg~~l~~~~~~~g-~~~l~~~~~ 402 (427)
T PRK02889 367 LTDT--T---RDESPSFAPNGRYILYATQQGG-RSVLAAVSS 402 (427)
T ss_pred ccCC--C---CccCceECCCCCEEEEEEecCC-CEEEEEEEC
Confidence 6421 1 1112233446665555543322 234555553
No 155
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=86.52 E-value=29 Score=32.60 Aligned_cols=134 Identities=20% Similarity=0.177 Sum_probs=73.1
Q ss_pred CceEEEEECCCCce-eecCCCcccccceEEEEE---CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCccee
Q 040145 173 LDLVLKYEMQKNRW-TVMNKMITARSFFASGVI---GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYD 248 (402)
Q Consensus 173 ~~~~~~~d~~t~~W-~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~ 248 (402)
.+++.+.|..|++- .+++. ....|..... +..+|+.+. ...+.++|+.+.+ .+...+......+
T Consensus 15 ~~~v~viD~~t~~~~~~i~~---~~~~h~~~~~s~Dgr~~yv~~r-------dg~vsviD~~~~~--~v~~i~~G~~~~~ 82 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPT---GGAPHAGLKFSPDGRYLYVANR-------DGTVSVIDLATGK--VVATIKVGGNPRG 82 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE----STTEEEEEE-TT-SSEEEEEET-------TSEEEEEETTSSS--EEEEEE-SSEEEE
T ss_pred CCEEEEEECCCCeEEEEEcC---CCCceeEEEecCCCCEEEEEcC-------CCeEEEEECCccc--EEEEEecCCCcce
Confidence 44899999988752 33332 2222444333 357888863 3468999999987 3444444444344
Q ss_pred EEE-ECCEEEEEcccccCCccCCcEEEEeCCCCCe-eecccc-c----cCCCceeE-EEECCEEEEEeccCCcEEEEEeC
Q 040145 249 AAV-LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNW-ESMAVG-L----REGWTGSS-VVVYEHLFVVSELERMKLKVYDP 320 (402)
Q Consensus 249 ~~~-~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W-~~~~~~-~----~~~~~~~~-~~~~~~l~~~gg~~~~~~~~yd~ 320 (402)
.++ -+|+..+.+.+. .+.+.++|.++.+= ..++.. . +..+..+. ....+..|++.-.+...++..|.
T Consensus 83 i~~s~DG~~~~v~n~~-----~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy 157 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYE-----PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY 157 (369)
T ss_dssp EEE--TTTEEEEEEEE-----TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred EEEcCCCCEEEEEecC-----CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEe
Confidence 333 477765555542 34788999887643 233321 1 12233223 23456667777666789999997
Q ss_pred CCC
Q 040145 321 STD 323 (402)
Q Consensus 321 ~~~ 323 (402)
...
T Consensus 158 ~d~ 160 (369)
T PF02239_consen 158 SDP 160 (369)
T ss_dssp TTS
T ss_pred ccc
Confidence 654
No 156
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.21 E-value=34 Score=33.17 Aligned_cols=150 Identities=13% Similarity=0.144 Sum_probs=76.8
Q ss_pred EEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEE--ECCEEEEEcCCCCCCCCCCeeEEE
Q 040145 150 CVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGV--IGGMIYVAGGSSADLFELDSAEVL 227 (402)
Q Consensus 150 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~y 227 (402)
++.+...+.+++.|+.+ ..+.++|..+++-.+ .+......-+.+. -++.+++.+.. ...+.+|
T Consensus 251 ~~~f~p~g~~i~Sgs~D-------~tvriWd~~~~~~~~--~l~~hs~~is~~~f~~d~~~l~s~s~------d~~i~vw 315 (456)
T KOG0266|consen 251 SVAFSPDGNLLVSGSDD-------GTVRIWDVRTGECVR--KLKGHSDGISGLAFSPDGNLLVSASY------DGTIRVW 315 (456)
T ss_pred EEEecCCCCEEEEecCC-------CcEEEEeccCCeEEE--eeeccCCceEEEEECCCCCEEEEcCC------CccEEEE
Confidence 33333456888888873 279999999854322 1221222222222 35677777754 3457899
Q ss_pred cCCCCcEE---EcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCC----eeeccccccCCCceeEE
Q 040145 228 DPVKGNWR---TIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDN----WESMAVGLREGWTGSSV 298 (402)
Q Consensus 228 d~~t~~W~---~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~----W~~~~~~~~~~~~~~~~ 298 (402)
|..++.-. .+.....+. ....+.. +++..+.+..+ +.+-.||+.... |...... ....+...-
T Consensus 316 d~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d------~~~~~w~l~~~~~~~~~~~~~~~-~~~~~~~~~ 387 (456)
T KOG0266|consen 316 DLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLD------RTLKLWDLRSGKSVGTYTGHSNL-VRCIFSPTL 387 (456)
T ss_pred ECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCC------CeEEEEEccCCcceeeecccCCc-ceeEecccc
Confidence 99987732 333333332 2223322 44444444322 256667776543 2222221 001111111
Q ss_pred EECCEEEEEeccCCcEEEEEeCCCC
Q 040145 299 VVYEHLFVVSELERMKLKVYDPSTD 323 (402)
Q Consensus 299 ~~~~~l~~~gg~~~~~~~~yd~~~~ 323 (402)
..+++..+.|+. ...+..+|+.+.
T Consensus 388 ~~~~~~i~sg~~-d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 388 STGGKLIYSGSE-DGSVYVWDSSSG 411 (456)
T ss_pred cCCCCeEEEEeC-CceEEEEeCCcc
Confidence 335665555554 678999999874
No 157
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=86.16 E-value=32 Score=32.79 Aligned_cols=151 Identities=11% Similarity=0.083 Sum_probs=82.8
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEE
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWR 235 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 235 (402)
++.||.+.-.++ ...++--|..-+.-++-..+. .++..-+..+++-+|+.- -.+++.|||+|+.-+
T Consensus 235 ~~RvYFlsD~eG-----~GnlYSvdldGkDlrrHTnFt--dYY~R~~nsDGkrIvFq~-------~GdIylydP~td~le 300 (668)
T COG4946 235 GERVYFLSDHEG-----VGNLYSVDLDGKDLRRHTNFT--DYYPRNANSDGKRIVFQN-------AGDIYLYDPETDSLE 300 (668)
T ss_pred cceEEEEecccC-----ccceEEeccCCchhhhcCCch--hccccccCCCCcEEEEec-------CCcEEEeCCCcCcce
Confidence 899999876643 346777777665544433322 122222334555444432 246899999999988
Q ss_pred EcC-CCCCCCcce------------eEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECC
Q 040145 236 TIA-SMGTNMASY------------DAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYE 302 (402)
Q Consensus 236 ~~~-~~~~~~~~~------------~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~ 302 (402)
++. .+|..|..- --++.+|.++.+-... ...++++-.+---+++.... -+. .-...++
T Consensus 301 kldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG-------kaFi~~~~~~~~iqv~~~~~-VrY-~r~~~~~ 371 (668)
T COG4946 301 KLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG-------KAFIMRPWDGYSIQVGKKGG-VRY-RRIQVDP 371 (668)
T ss_pred eeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC-------cEEEECCCCCeeEEcCCCCc-eEE-EEEccCC
Confidence 773 334433211 1234466665554321 45555553332222332111 111 1123445
Q ss_pred EEEEEeccCCcEEEEEeCCCCceeecC
Q 040145 303 HLFVVSELERMKLKVYDPSTDSWETIE 329 (402)
Q Consensus 303 ~l~~~gg~~~~~~~~yd~~~~~W~~~~ 329 (402)
+-.++|-.++..+.+||..+..=+++.
T Consensus 372 e~~vigt~dgD~l~iyd~~~~e~kr~e 398 (668)
T COG4946 372 EGDVIGTNDGDKLGIYDKDGGEVKRIE 398 (668)
T ss_pred cceEEeccCCceEEEEecCCceEEEee
Confidence 567777777889999999988766665
No 158
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=86.08 E-value=22 Score=30.78 Aligned_cols=165 Identities=10% Similarity=0.085 Sum_probs=82.7
Q ss_pred cEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEEC-CEE
Q 040145 130 CWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIG-GMI 208 (402)
Q Consensus 130 ~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~-~~i 208 (402)
-|+..+|+.......+.--+....+..+.|+..||- ..++..|..+++-++.-. ....+-|+++.-+ +--
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD--------~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~q 170 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD--------GVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANGQ 170 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCC--------eEEEEEEecCCEEEEEEc-CCcceeeeeeecccCcc
Confidence 377666665422122233334444457888888874 278899999998765321 1123445554422 222
Q ss_pred EEEcCCCCCCCCCCeeEEEcCCCCcEEEc-C-----CCCCCCcce--eEEEECCEEEEEcccccCCccCCcEEEEeCCCC
Q 040145 209 YVAGGSSADLFELDSAEVLDPVKGNWRTI-A-----SMGTNMASY--DAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTD 280 (402)
Q Consensus 209 yv~GG~~~~~~~~~~~~~yd~~t~~W~~~-~-----~~~~~~~~~--~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~ 280 (402)
++.|+.+ .++-++|.+|.+=..+ . ....|..+- .+...+....+.||.. .+-.+++.+.
T Consensus 171 ilsG~ED------GtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp-------~lslwhLrss 237 (325)
T KOG0649|consen 171 ILSGAED------GTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP-------KLSLWHLRSS 237 (325)
T ss_pred eeecCCC------ccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC-------ceeEEeccCC
Confidence 3455553 3467788888764433 2 222332222 3334466666666632 4455555444
Q ss_pred CeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeC
Q 040145 281 NWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDP 320 (402)
Q Consensus 281 ~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~ 320 (402)
+=+.+ .|.+.....|.+.+...++||. ++.+..|-.
T Consensus 238 e~t~v---fpipa~v~~v~F~~d~vl~~G~-g~~v~~~~l 273 (325)
T KOG0649|consen 238 ESTCV---FPIPARVHLVDFVDDCVLIGGE-GNHVQSYTL 273 (325)
T ss_pred CceEE---EecccceeEeeeecceEEEecc-ccceeeeee
Confidence 32222 2222222334454555555564 345555444
No 159
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=85.90 E-value=49 Score=34.69 Aligned_cols=173 Identities=14% Similarity=0.114 Sum_probs=98.8
Q ss_pred CceEEEEECCCCceeecCCCcccccceEEE---EEC--CEEEEEcCC----CCCCCCCCeeEEEcCCC-CcEEEcCCCCC
Q 040145 173 LDLVLKYEMQKNRWTVMNKMITARSFFASG---VIG--GMIYVAGGS----SADLFELDSAEVLDPVK-GNWRTIASMGT 242 (402)
Q Consensus 173 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~---~~~--~~iyv~GG~----~~~~~~~~~~~~yd~~t-~~W~~~~~~~~ 242 (402)
.+.+.+||..|-+-.....+...-...+.. ..+ +..|++|-. +........+.+|.... ++-+.++++..
T Consensus 749 ~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v 828 (1096)
T KOG1897|consen 749 VSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVV 828 (1096)
T ss_pred EEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeee
Confidence 445667777665433333322221222222 122 567777753 33333345677776666 66777777766
Q ss_pred CCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccCCcEEEEEeCC
Q 040145 243 NMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELERMKLKVYDPS 321 (402)
Q Consensus 243 ~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~~~~~~~yd~~ 321 (402)
...-.+.+.+||++.+-=| ..+-.|+..+++=-.+......+-...- -+.++.|++..-.....+..|+..
T Consensus 829 ~Gav~aL~~fngkllA~In--------~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~ 900 (1096)
T KOG1897|consen 829 KGAVYALVEFNGKLLAGIN--------QSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGD 900 (1096)
T ss_pred ccceeehhhhCCeEEEecC--------cEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEecc
Confidence 6666677778898766333 3678888666521111111111111111 244777777555556789999999
Q ss_pred CCceeecCCCCCCccccCCeEEEEeCCEEEEEecC
Q 040145 322 TDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRN 356 (402)
Q Consensus 322 ~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~ 356 (402)
.+...+++---.| ++..++..+++..|+.+-.
T Consensus 901 eg~f~evArD~~p---~Wmtaveil~~d~ylgae~ 932 (1096)
T KOG1897|consen 901 EGNFEEVARDYNP---NWMTAVEILDDDTYLGAEN 932 (1096)
T ss_pred CCceEEeehhhCc---cceeeEEEecCceEEeecc
Confidence 9989998842233 5666777888888876653
No 160
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=85.14 E-value=27 Score=31.05 Aligned_cols=180 Identities=13% Similarity=0.182 Sum_probs=89.6
Q ss_pred EEEccCCEEEEEeCccCCCCCCCceEEEEECCCCcee---ecC-CCcccccceEEEE-ECC-EEEEEcCCCCCCCCCCee
Q 040145 151 VSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWT---VMN-KMITARSFFASGV-IGG-MIYVAGGSSADLFELDSA 224 (402)
Q Consensus 151 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~---~~~-~~~~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~ 224 (402)
++....+..+.+||.++ .+-+|+..+..=. ... .++....+.+++. +++ .|+-..| -.+.
T Consensus 103 CA~sPSg~~VAcGGLdN-------~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SG-------D~TC 168 (343)
T KOG0286|consen 103 CAYSPSGNFVACGGLDN-------KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSG-------DMTC 168 (343)
T ss_pred EEECCCCCeEEecCcCc-------eeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCC-------CceE
Confidence 34445788999999853 4667887755221 111 2333344444443 444 4443333 3567
Q ss_pred EEEcCCCCcEEEcCCCCCCCcceeE---EEECCEEEEEcccccCCccCCcEEEEeCCCCCeee-ccccccCCCceeEEEE
Q 040145 225 EVLDPVKGNWRTIASMGTNMASYDA---AVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES-MAVGLREGWTGSSVVV 300 (402)
Q Consensus 225 ~~yd~~t~~W~~~~~~~~~~~~~~~---~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~~~~~~~~ 300 (402)
..+|.++.+=... +........+ ...+++.|+.||.+ .....+|.....=.. .. -...-..+...+
T Consensus 169 alWDie~g~~~~~--f~GH~gDV~slsl~p~~~ntFvSg~cD------~~aklWD~R~~~c~qtF~--ghesDINsv~ff 238 (343)
T KOG0286|consen 169 ALWDIETGQQTQV--FHGHTGDVMSLSLSPSDGNTFVSGGCD------KSAKLWDVRSGQCVQTFE--GHESDINSVRFF 238 (343)
T ss_pred EEEEcccceEEEE--ecCCcccEEEEecCCCCCCeEEecccc------cceeeeeccCcceeEeec--ccccccceEEEc
Confidence 7788888764332 1111111111 11277899999875 245566665542111 11 001111222223
Q ss_pred -CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCe--EEEEeCCEEEEEecCce
Q 040145 301 -YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPF--AVNACDCRVYVVGRNLH 358 (402)
Q Consensus 301 -~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~--~~~~~~~~i~v~GG~~~ 358 (402)
+|.-|+. |.+......||+..++=..+= . +.....+. ......|+|++.|+.+.
T Consensus 239 P~G~afat-GSDD~tcRlyDlRaD~~~a~y--s-~~~~~~gitSv~FS~SGRlLfagy~d~ 295 (343)
T KOG0286|consen 239 PSGDAFAT-GSDDATCRLYDLRADQELAVY--S-HDSIICGITSVAFSKSGRLLFAGYDDF 295 (343)
T ss_pred cCCCeeee-cCCCceeEEEeecCCcEEeee--c-cCcccCCceeEEEcccccEEEeeecCC
Confidence 4555554 444667888999876422221 1 11112222 23346789999986543
No 161
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=85.07 E-value=14 Score=30.09 Aligned_cols=81 Identities=15% Similarity=0.028 Sum_probs=51.4
Q ss_pred EEECCEEEEEeccCCc----EEEEEeCCCCce-eecCCCCCCcccc---CCeEE-EEeCCEEEEEecCceeeeEEEEecc
Q 040145 298 VVVYEHLFVVSELERM----KLKVYDPSTDSW-ETIEGPPLPEQIC---KPFAV-NACDCRVYVVGRNLHVAVGHITRLS 368 (402)
Q Consensus 298 ~~~~~~l~~~gg~~~~----~~~~yd~~~~~W-~~~~~~~~p~~~~---~~~~~-~~~~~~i~v~GG~~~~~~~~v~~~~ 368 (402)
+.++|.+|-++..... .|..||..+.+. ..++ +|.... ....+ ++.+++|.++--.......+||+.+
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~---lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~ 78 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLP---LPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMK 78 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEeccccccCCEEC---CCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEe
Confidence 5689999988765422 699999999999 5553 554322 12233 2337788888544444458899987
Q ss_pred cccccCceeeeEEEEe
Q 040145 369 TSEKKWSFSVQWQVVD 384 (402)
Q Consensus 369 ~~~~~~~~~~~W~~~~ 384 (402)
. ......+|.++-
T Consensus 79 ~---~~~~~~SWtK~~ 91 (164)
T PF07734_consen 79 K---YGYGKESWTKLF 91 (164)
T ss_pred e---eccCcceEEEEE
Confidence 3 111266888843
No 162
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=84.28 E-value=30 Score=30.81 Aligned_cols=178 Identities=13% Similarity=0.147 Sum_probs=82.0
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccc-
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSF- 198 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~- 198 (402)
.+-+|+..+..-....++.........+..++.+..++.|+.-.|- ..+..+|..+++-...-.-......
T Consensus 120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD--------~TCalWDie~g~~~~~f~GH~gDV~s 191 (343)
T KOG0286|consen 120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGD--------MTCALWDIETGQQTQVFHGHTGDVMS 191 (343)
T ss_pred eeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCC--------ceEEEEEcccceEEEEecCCcccEEE
Confidence 3667887755332221111000011134455555445555554332 2677889888764331110000000
Q ss_pred eEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEe
Q 040145 199 FASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYD 276 (402)
Q Consensus 199 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd 276 (402)
......+.+.|+.||++. ...++|.....-. ..++..-....++.+ +|.-++.|..+ ..+-.||
T Consensus 192 lsl~p~~~ntFvSg~cD~------~aklWD~R~~~c~--qtF~ghesDINsv~ffP~G~afatGSDD------~tcRlyD 257 (343)
T KOG0286|consen 192 LSLSPSDGNTFVSGGCDK------SAKLWDVRSGQCV--QTFEGHESDINSVRFFPSGDAFATGSDD------ATCRLYD 257 (343)
T ss_pred EecCCCCCCeEEeccccc------ceeeeeccCccee--EeecccccccceEEEccCCCeeeecCCC------ceeEEEe
Confidence 011112678999999843 3456676655321 222222222223322 55555555432 2577899
Q ss_pred CCCCCeeec-cc-cccCCCceeEEEECCEEEEEeccCCcEEEEEeC
Q 040145 277 PSTDNWESM-AV-GLREGWTGSSVVVYEHLFVVSELERMKLKVYDP 320 (402)
Q Consensus 277 ~~~~~W~~~-~~-~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~ 320 (402)
+..++=-.+ .. ....+.........|+|+..|. +...+.++|.
T Consensus 258 lRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy-~d~~c~vWDt 302 (343)
T KOG0286|consen 258 LRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY-DDFTCNVWDT 302 (343)
T ss_pred ecCCcEEeeeccCcccCCceeEEEcccccEEEeee-cCCceeEeec
Confidence 887652222 11 1111212222345788877664 4444555444
No 163
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=83.57 E-value=33 Score=30.73 Aligned_cols=108 Identities=18% Similarity=0.322 Sum_probs=68.2
Q ss_pred CcEEEEeCCCCC----eeeccccccCCCceeE--EE---ECCEEEEEe--ccCCcEEEEEeCCCCceeecCCCCCCcccc
Q 040145 270 PRGQVYDPSTDN----WESMAVGLREGWTGSS--VV---VYEHLFVVS--ELERMKLKVYDPSTDSWETIEGPPLPEQIC 338 (402)
Q Consensus 270 ~~~~~yd~~~~~----W~~~~~~~~~~~~~~~--~~---~~~~l~~~g--g~~~~~~~~yd~~~~~W~~~~~~~~p~~~~ 338 (402)
+.+..||.++++ |.+--. -+..|.+-. .. ++++||+.- |+..-.+|..|..+..-+.+...|.+
T Consensus 78 SHVH~yd~e~~~VrLLWkesih-~~~~WaGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ps~---- 152 (339)
T PF09910_consen 78 SHVHEYDTENDSVRLLWKESIH-DKTKWAGEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSNPSL---- 152 (339)
T ss_pred ceEEEEEcCCCeEEEEEecccC-CccccccchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeeccCCCCc----
Confidence 357889998875 654332 345555543 22 368888874 33355788889888887777643332
Q ss_pred CCeEEEEeCCEEEEEecCceeeeEEEEecccccccCceeeeE--EEEeCCCCCCC
Q 040145 339 KPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQW--QVVDAPDNFSD 391 (402)
Q Consensus 339 ~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W--~~~~~~~~~~~ 391 (402)
-++...|...|-+ -........+.++|..+. .| +..+.+.+..+
T Consensus 153 --KG~~~~D~a~F~i-~~~~~g~~~i~~~Dli~~------~~~~e~f~~~~s~Dg 198 (339)
T PF09910_consen 153 --KGTLVHDYACFGI-NNFHKGVSGIHCLDLISG------KWVIESFDVSLSVDG 198 (339)
T ss_pred --CceEeeeeEEEec-cccccCCceEEEEEccCC------eEEEEecccccCCCC
Confidence 3455556666655 444666788999998888 55 55555554444
No 164
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=83.55 E-value=33 Score=30.73 Aligned_cols=141 Identities=17% Similarity=0.100 Sum_probs=80.1
Q ss_pred CCCceEEEEECCCCc----eeecCCCcccccceEEE-E---ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCC
Q 040145 171 CPLDLVLKYEMQKNR----WTVMNKMITARSFFASG-V---IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGT 242 (402)
Q Consensus 171 ~~~~~~~~~d~~t~~----W~~~~~~~~~r~~~~~~-~---~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~ 242 (402)
+..+.+..||..+++ |++--.-+....+-..- . +++.||+.-+-.. . ...++..|..++.-+.+.+-|.
T Consensus 75 NKYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DGh-~--nLGvy~ldr~~g~~~~L~~~ps 151 (339)
T PF09910_consen 75 NKYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARADGH-A--NLGVYSLDRRTGKAEKLSSNPS 151 (339)
T ss_pred eccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecCCc-c--eeeeEEEcccCCceeeccCCCC
Confidence 345688899999886 55532222111111111 1 3577877754221 1 4567888888888887766555
Q ss_pred CCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCe--eeccccc-------cCCCceeEEEECCEEEEEeccCCc
Q 040145 243 NMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNW--ESMAVGL-------REGWTGSSVVVYEHLFVVSELERM 313 (402)
Q Consensus 243 ~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W--~~~~~~~-------~~~~~~~~~~~~~~l~~~gg~~~~ 313 (402)
.. ...+.+...|-+ ..-....+.+.+||+.+++| +..+... -.+..+..+...+++|.|-+-
T Consensus 152 ~K---G~~~~D~a~F~i---~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~rG--- 222 (339)
T PF09910_consen 152 LK---GTLVHDYACFGI---NNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVRG--- 222 (339)
T ss_pred cC---ceEeeeeEEEec---cccccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEEec---
Confidence 42 222333333322 22223346899999999999 5443211 112344456778888877332
Q ss_pred EEEEEeCCCC
Q 040145 314 KLKVYDPSTD 323 (402)
Q Consensus 314 ~~~~yd~~~~ 323 (402)
.+.+.||...
T Consensus 223 Gi~vgnP~~~ 232 (339)
T PF09910_consen 223 GIFVGNPYNG 232 (339)
T ss_pred cEEEeCCCCC
Confidence 4788888743
No 165
>PRK02889 tolB translocation protein TolB; Provisional
Probab=83.05 E-value=45 Score=31.97 Aligned_cols=147 Identities=11% Similarity=-0.103 Sum_probs=71.1
Q ss_pred CceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE
Q 040145 173 LDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL 252 (402)
Q Consensus 173 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~ 252 (402)
...++++|.....-+.+..-...-.......-+.+|+...-.++ ...++++|..+++=+.+...+... ......-
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~----~~~I~~~dl~~g~~~~l~~~~g~~-~~~~~SP 249 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESK----KPVVYVHDLATGRRRVVANFKGSN-SAPAWSP 249 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCC----CcEEEEEECCCCCEEEeecCCCCc-cceEECC
Confidence 45788888865444443221111111111111234444332111 356899999887655554433211 1112222
Q ss_pred CC-EEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEecc--CCcEEEEEeCCCCceeecC
Q 040145 253 DG-KLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSEL--ERMKLKVYDPSTDSWETIE 329 (402)
Q Consensus 253 ~g-~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~--~~~~~~~yd~~~~~W~~~~ 329 (402)
+| +|++.....+ ...++.+|..++....+.... .........-+|+.+++... +...++.+|..+...+.+.
T Consensus 250 DG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 250 DGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQSS-GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT 324 (427)
T ss_pred CCCEEEEEEccCC----CceEEEEECCCCCcEECCCCC-CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe
Confidence 55 4544433221 247889998877766654311 11111222335554343322 1357888888777766654
No 166
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=82.76 E-value=42 Score=31.40 Aligned_cols=233 Identities=15% Similarity=0.120 Sum_probs=117.0
Q ss_pred CCCeEEEEEEeCCCCceeEEEeecCCCc--EEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEE
Q 040145 103 KDPWLFVFAFHKCTGKIQWQVLDLTHYC--WHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYE 180 (402)
Q Consensus 103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~--W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d 180 (402)
.++.+|+...+. .++.+|+.+.+ |.......... ..-.... .+|+||+-... ..+++||
T Consensus 67 ~dg~v~~~~~~G-----~i~A~d~~~g~~~W~~~~~~~~~~----~~~~~~~--~~G~i~~g~~~--------g~~y~ld 127 (370)
T COG1520 67 GDGTVYVGTRDG-----NIFALNPDTGLVKWSYPLLGAVAQ----LSGPILG--SDGKIYVGSWD--------GKLYALD 127 (370)
T ss_pred eCCeEEEecCCC-----cEEEEeCCCCcEEecccCcCccee----ccCceEE--eCCeEEEeccc--------ceEEEEE
Confidence 467777762111 58899999887 86533210000 1111122 26777765432 1799999
Q ss_pred CCCC--ceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCC-CCCCcceeEEEECCE
Q 040145 181 MQKN--RWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASM-GTNMASYDAAVLDGK 255 (402)
Q Consensus 181 ~~t~--~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~-~~~~~~~~~~~~~g~ 255 (402)
..++ .|+.--... .+..-..+..++.+|+... ...++.+|..+++ |+.-.+. ...+.....+..++.
T Consensus 128 ~~~G~~~W~~~~~~~-~~~~~~~v~~~~~v~~~s~-------~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~ 199 (370)
T COG1520 128 ASTGTLVWSRNVGGS-PYYASPPVVGDGTVYVGTD-------DGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT 199 (370)
T ss_pred CCCCcEEEEEecCCC-eEEecCcEEcCcEEEEecC-------CCeEEEEEccCCcEEEEEecCCccccccccCceeecce
Confidence 9776 477643331 3333334455667776641 4567888888654 8743322 122222222356777
Q ss_pred EEEEcccccCCccCCcEEEEeCCCC--Ceeeccc-ccc-------CCCceeEEEECCEEEEEeccCCcEEEEEeCCCC--
Q 040145 256 LLVTEGWLWPFFVSPRGQVYDPSTD--NWESMAV-GLR-------EGWTGSSVVVYEHLFVVSELERMKLKVYDPSTD-- 323 (402)
Q Consensus 256 ly~~gG~~~~~~~~~~~~~yd~~~~--~W~~~~~-~~~-------~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~-- 323 (402)
+|+.... . ...++.+|+.++ .|+.-.. ... .......+..++.+|.... ...+..+|..+.
T Consensus 200 vy~~~~~----~-~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~--~g~~~~l~~~~G~~ 272 (370)
T COG1520 200 VYVGSDG----Y-DGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSY--GGKLLCLDADTGEL 272 (370)
T ss_pred EEEecCC----C-cceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEec--CCeEEEEEcCCCce
Confidence 7775332 1 126899999766 5874211 011 1111222445555544322 334777776543
Q ss_pred ceeecCCCCCCccccCCeEEEEeCCEEEEEecCcee-eeEEEEeccc
Q 040145 324 SWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHV-AVGHITRLST 369 (402)
Q Consensus 324 ~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~-~~~~v~~~~~ 369 (402)
.|+.-..................+|++|+....... ....++.++.
T Consensus 273 ~W~~~~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~~~~~~~~~~~~ 319 (370)
T COG1520 273 IWSFPAGGSVQGSGLYTTPVAGADGKVYIGFTDNDGRGSGSLYALAD 319 (370)
T ss_pred EEEEecccEeccCCeeEEeecCCCccEEEEEeccccccccceEEEec
Confidence 577644200111001112222347888887653322 3455666654
No 167
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=81.80 E-value=42 Score=30.78 Aligned_cols=184 Identities=15% Similarity=0.114 Sum_probs=98.1
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK 183 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t 183 (402)
+..+.+-||. ....++++..+..|.-. +..-. .+-.++.+.+++.+++.|+.. ..+.++...|
T Consensus 75 ~~~l~aTGGg----DD~AflW~~~~ge~~~e--ltgHK----DSVt~~~FshdgtlLATGdms-------G~v~v~~~st 137 (399)
T KOG0296|consen 75 NNNLVATGGG----DDLAFLWDISTGEFAGE--LTGHK----DSVTCCSFSHDGTLLATGDMS-------GKVLVFKVST 137 (399)
T ss_pred CCceEEecCC----CceEEEEEccCCcceeE--ecCCC----CceEEEEEccCceEEEecCCC-------ccEEEEEccc
Confidence 4444454433 23368899988885321 22111 345566666788899999873 3688888888
Q ss_pred C--ceeecCCCccc--ccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEE
Q 040145 184 N--RWTVMNKMITA--RSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVT 259 (402)
Q Consensus 184 ~--~W~~~~~~~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~ 259 (402)
+ .|....++..- -..| -...|+++|.. ..++|+|....+.-.++-.-+..+..++-..-+|+..+.
T Consensus 138 g~~~~~~~~e~~dieWl~WH----p~a~illAG~~------DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 138 GGEQWKLDQEVEDIEWLKWH----PRAHILLAGST------DGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILT 207 (399)
T ss_pred CceEEEeecccCceEEEEec----ccccEEEeecC------CCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEE
Confidence 7 46654322110 0000 02456667755 345788887765433331112222233333336776666
Q ss_pred cccccCCccCCcEEEEeCCCCCe-eeccc-------cccCCCceeE---EEECCEEEEEeccCCcEEEEEeC
Q 040145 260 EGWLWPFFVSPRGQVYDPSTDNW-ESMAV-------GLREGWTGSS---VVVYEHLFVVSELERMKLKVYDP 320 (402)
Q Consensus 260 gG~~~~~~~~~~~~~yd~~~~~W-~~~~~-------~~~~~~~~~~---~~~~~~l~~~gg~~~~~~~~yd~ 320 (402)
|-.+ ..+.++|+++++= ..+.. .+.....+.. +..++..+++++..+..+.+.++
T Consensus 208 gy~d------gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~ 273 (399)
T KOG0296|consen 208 GYDD------GTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG 273 (399)
T ss_pred EecC------ceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCC
Confidence 5432 2688899988742 22221 1111111122 33466777777665666666664
No 168
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=81.80 E-value=39 Score=30.41 Aligned_cols=148 Identities=14% Similarity=0.136 Sum_probs=78.5
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCcee-ecC---CCc--ccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcC
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWT-VMN---KMI--TARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDP 229 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~-~~~---~~~--~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~ 229 (402)
.+.+-++||.... .-+.+.+.+||-....-. ++. +.. .-|..+-++++.++|||.-=.++ .....++|.
T Consensus 58 ~N~laLVGGg~~p-ky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n----~k~l~~~et 132 (346)
T KOG2111|consen 58 SNYLALVGGGSRP-KYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDN----PKLLHVIET 132 (346)
T ss_pred hceEEEecCCCCC-CCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCC----hhheeeeec
Confidence 4566677776433 246789999994433211 111 111 11344556666777766643322 222333333
Q ss_pred CCCcEEEcCCCCCCCcceeEEE-ECCEEEEEcccccCCccCCcEEEEeCCCCCee---eccccccCCCceeEEEECCEEE
Q 040145 230 VKGNWRTIASMGTNMASYDAAV-LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWE---SMAVGLREGWTGSSVVVYEHLF 305 (402)
Q Consensus 230 ~t~~W~~~~~~~~~~~~~~~~~-~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~---~~~~~~~~~~~~~~~~~~~~l~ 305 (402)
.. .|...++.+- .+..+.++-|... -.+.+-|+...+-. .+.. ........+...+|.+.
T Consensus 133 ~~----------NPkGlC~~~~~~~k~~LafPg~k~-----GqvQi~dL~~~~~~~p~~I~A-H~s~Iacv~Ln~~Gt~v 196 (346)
T KOG2111|consen 133 RS----------NPKGLCSLCPTSNKSLLAFPGFKT-----GQVQIVDLASTKPNAPSIINA-HDSDIACVALNLQGTLV 196 (346)
T ss_pred cc----------CCCceEeecCCCCceEEEcCCCcc-----ceEEEEEhhhcCcCCceEEEc-ccCceeEEEEcCCccEE
Confidence 22 2222222222 2556778877642 26777787665542 1111 11122222234578888
Q ss_pred EEeccCCcEEEEEeCCCCc
Q 040145 306 VVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 306 ~~gg~~~~~~~~yd~~~~~ 324 (402)
..++..+.-|.+||..+++
T Consensus 197 ATaStkGTLIRIFdt~~g~ 215 (346)
T KOG2111|consen 197 ATASTKGTLIRIFDTEDGT 215 (346)
T ss_pred EEeccCcEEEEEEEcCCCc
Confidence 8888778889999998875
No 169
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=81.79 E-value=14 Score=35.93 Aligned_cols=95 Identities=18% Similarity=0.152 Sum_probs=54.6
Q ss_pred ceEEEEECCCCceeecCCCcccccceEEEEEC--CEEEEEcCCCCCCCCCCeeEEEcCCCCcEEE-------cCCCCCCC
Q 040145 174 DLVLKYEMQKNRWTVMNKMITARSFFASGVIG--GMIYVAGGSSADLFELDSAEVLDPVKGNWRT-------IASMGTNM 244 (402)
Q Consensus 174 ~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-------~~~~~~~~ 244 (402)
.++|++|...+.|-. |+-..-....++.++ +.++++|+. ...|+.+|+.+.+-.. +...|..-
T Consensus 155 ~evYRlNLEqGrfL~--P~~~~~~~lN~v~in~~hgLla~Gt~------~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~ 226 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFLN--PFETDSGELNVVSINEEHGLLACGTE------DGVVEFWDPRDKSRVGTLDAASSVNSHPGGD 226 (703)
T ss_pred cceEEEEcccccccc--ccccccccceeeeecCccceEEeccc------CceEEEecchhhhhheeeecccccCCCcccc
Confidence 489999999998744 332222222333333 568888886 5678999998765221 22233322
Q ss_pred cc--eeEEEE-CCEEEEEcccccCCccCCcEEEEeCCCCC
Q 040145 245 AS--YDAAVL-DGKLLVTEGWLWPFFVSPRGQVYDPSTDN 281 (402)
Q Consensus 245 ~~--~~~~~~-~g~ly~~gG~~~~~~~~~~~~~yd~~~~~ 281 (402)
.. .++..+ |+-|-+.-|.. .-.+++||+.+.+
T Consensus 227 ~~~svTal~F~d~gL~~aVGts-----~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 227 AAPSVTALKFRDDGLHVAVGTS-----TGSVLIYDLRASK 261 (703)
T ss_pred ccCcceEEEecCCceeEEeecc-----CCcEEEEEcccCC
Confidence 22 233334 43565554432 2368999997765
No 170
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=81.09 E-value=31 Score=29.95 Aligned_cols=97 Identities=15% Similarity=0.051 Sum_probs=51.6
Q ss_pred EEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCC
Q 040145 151 VSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPV 230 (402)
Q Consensus 151 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~ 230 (402)
.-+..+|.|+.+.-. +.+-.+|+.+-.--+--.||......+. .-+..+||+||. .-.++.||..
T Consensus 190 lEvs~dG~ilTia~g--------ssV~Fwdaksf~~lKs~k~P~nV~SASL-~P~k~~fVaGge------d~~~~kfDy~ 254 (334)
T KOG0278|consen 190 LEVSQDGRILTIAYG--------SSVKFWDAKSFGLLKSYKMPCNVESASL-HPKKEFFVAGGE------DFKVYKFDYN 254 (334)
T ss_pred eeeccCCCEEEEecC--------ceeEEeccccccceeeccCccccccccc-cCCCceEEecCc------ceEEEEEecc
Confidence 333347777766421 2577778776432222234432211111 124478999997 3457888888
Q ss_pred CCcEEEcCCCCCCCcceeEE-E--ECCEEEEEccccc
Q 040145 231 KGNWRTIASMGTNMASYDAA-V--LDGKLLVTEGWLW 264 (402)
Q Consensus 231 t~~W~~~~~~~~~~~~~~~~-~--~~g~ly~~gG~~~ 264 (402)
|+. ++........+..-+ . -+|.+|..|..++
T Consensus 255 Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDG 289 (334)
T KOG0278|consen 255 TGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSEDG 289 (334)
T ss_pred CCc--eeeecccCCCCceEEEEECCCCceeeccCCCc
Confidence 875 333322222222222 2 2899999988653
No 171
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=80.92 E-value=49 Score=30.95 Aligned_cols=95 Identities=11% Similarity=0.096 Sum_probs=53.7
Q ss_pred CCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCC-----CCCC--CcceeEEEECCE
Q 040145 183 KNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIAS-----MGTN--MASYDAAVLDGK 255 (402)
Q Consensus 183 t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~-----~~~~--~~~~~~~~~~g~ 255 (402)
.+.|+.+.. .....--++.++|++|++.- ...++++|..-. -.++.. +... ....-.+...|+
T Consensus 189 ~~~Wt~l~~--~~~~~~DIi~~kGkfYAvD~-------~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~Gd 258 (373)
T PLN03215 189 GNVLKALKQ--MGYHFSDIIVHKGQTYALDS-------IGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGE 258 (373)
T ss_pred CCeeeEccC--CCceeeEEEEECCEEEEEcC-------CCeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCE
Confidence 488999864 23335577889999999932 344666664311 112211 1111 122335667888
Q ss_pred EEEEcccccCC-----------ccCC--cEEEEeCCCCCeeeccc
Q 040145 256 LLVTEGWLWPF-----------FVSP--RGQVYDPSTDNWESMAV 287 (402)
Q Consensus 256 ly~~gG~~~~~-----------~~~~--~~~~yd~~~~~W~~~~~ 287 (402)
||++....... .... .++..|.+..+|.++..
T Consensus 259 LLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~s 303 (373)
T PLN03215 259 LYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKT 303 (373)
T ss_pred EEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecc
Confidence 99887642111 0111 34555777889999876
No 172
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=80.89 E-value=52 Score=31.23 Aligned_cols=197 Identities=12% Similarity=0.105 Sum_probs=94.9
Q ss_pred CCcEEeCCCCCCCCCCCCCCceEEEE--ccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCC-C-c-ccc--cceE
Q 040145 128 HYCWHTIPAMPCKDKVCPHGFRCVSI--PREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNK-M-I-TAR--SFFA 200 (402)
Q Consensus 128 ~~~W~~l~~~~~~~~~~~~~~~~~~~--~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~-~-~-~~r--~~~~ 200 (402)
-.+|+.+. .|... ...+-.+.+ ...+.-+++|-.. .+..=+=.-++|+.... . . ... ....
T Consensus 74 G~~W~q~~-~p~~~---~~~L~~V~F~~~d~~~GwAVG~~G--------~IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~ 141 (398)
T PLN00033 74 SSEWEQVD-LPIDP---GVVLLDIAFVPDDPTHGFLLGTRQ--------TLLETKDGGKTWVPRSIPSAEDEDFNYRFNS 141 (398)
T ss_pred CCccEEee-cCCCC---CCceEEEEeccCCCCEEEEEcCCC--------EEEEEcCCCCCceECccCcccccccccceee
Confidence 45688764 33211 012333333 2345777777531 22222222347887531 1 1 111 2334
Q ss_pred EEEECCEEEEEcCCCCCCCCCCeeEEEcCC--CCcEEEcCCCCC-CCcceeEEEE-CCEEEEEcccccCCccCCcEEEEe
Q 040145 201 SGVIGGMIYVAGGSSADLFELDSAEVLDPV--KGNWRTIASMGT-NMASYDAAVL-DGKLLVTEGWLWPFFVSPRGQVYD 276 (402)
Q Consensus 201 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~--t~~W~~~~~~~~-~~~~~~~~~~-~g~ly~~gG~~~~~~~~~~~~~yd 276 (402)
+...++..|++|-. . .+|-.. -.+|+.++..+. +........+ ++..+++|... .+++-+
T Consensus 142 v~f~~~~g~~vG~~-------G--~il~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~~G-------~v~~S~ 205 (398)
T PLN00033 142 ISFKGKEGWIIGKP-------A--ILLHTSDGGETWERIPLSPKLPGEPVLIKATGPKSAEMVTDEG-------AIYVTS 205 (398)
T ss_pred eEEECCEEEEEcCc-------e--EEEEEcCCCCCceECccccCCCCCceEEEEECCCceEEEeccc-------eEEEEC
Confidence 55567788888642 1 333333 357998754321 1122233334 45577776432 345555
Q ss_pred CCCCCeeecccc-----ccC----------CCce---e-EEEECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccc
Q 040145 277 PSTDNWESMAVG-----LRE----------GWTG---S-SVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQI 337 (402)
Q Consensus 277 ~~~~~W~~~~~~-----~~~----------~~~~---~-~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~ 337 (402)
-.-.+|+.+..+ +.. .+.+ . ...-++.++++|-. ++-+...|.....|+.+. .+...
T Consensus 206 D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~-G~~~~s~d~G~~~W~~~~---~~~~~ 281 (398)
T PLN00033 206 NAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSR-GNFYLTWEPGQPYWQPHN---RASAR 281 (398)
T ss_pred CCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECC-ccEEEecCCCCcceEEec---CCCcc
Confidence 455689986221 110 0111 1 12235667777543 333444555555699886 33322
Q ss_pred cCCeEEEEeCCEEEEEecC
Q 040145 338 CKPFAVNACDCRVYVVGRN 356 (402)
Q Consensus 338 ~~~~~~~~~~~~i~v~GG~ 356 (402)
+........++.++++|..
T Consensus 282 ~l~~v~~~~dg~l~l~g~~ 300 (398)
T PLN00033 282 RIQNMGWRADGGLWLLTRG 300 (398)
T ss_pred ceeeeeEcCCCCEEEEeCC
Confidence 3333334568889988864
No 173
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=80.74 E-value=37 Score=29.51 Aligned_cols=129 Identities=15% Similarity=0.106 Sum_probs=64.6
Q ss_pred CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEE--EECCEEEEEcccccCCccCCcEEEEeCCCCCe
Q 040145 205 GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAA--VLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNW 282 (402)
Q Consensus 205 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~--~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W 282 (402)
+.+.++++| ...+-.||..++.=..+...-.......++ -++|+....||.++ .+-++|+..-.=
T Consensus 51 dk~~LAaa~-------~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg------t~kIWdlR~~~~ 117 (311)
T KOG0315|consen 51 DKKDLAAAG-------NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG------TVKIWDLRSLSC 117 (311)
T ss_pred Ccchhhhcc-------CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCc------eEEEEeccCccc
Confidence 345555555 456888999876522222222222333343 34899888888653 466677655211
Q ss_pred eeccccccCCCceeEEEE---CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccC-CeEEEEeCCEEEEEe
Q 040145 283 ESMAVGLREGWTGSSVVV---YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICK-PFAVNACDCRVYVVG 354 (402)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~---~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~-~~~~~~~~~~i~v~G 354 (402)
.+. ......--.+++ ++.|++ |.....|+++|..++...... +|+..-. ....+..+|+.++.+
T Consensus 118 qR~---~~~~spVn~vvlhpnQteLis--~dqsg~irvWDl~~~~c~~~l---iPe~~~~i~sl~v~~dgsml~a~ 185 (311)
T KOG0315|consen 118 QRN---YQHNSPVNTVVLHPNQTELIS--GDQSGNIRVWDLGENSCTHEL---IPEDDTSIQSLTVMPDGSMLAAA 185 (311)
T ss_pred chh---ccCCCCcceEEecCCcceEEe--ecCCCcEEEEEccCCcccccc---CCCCCcceeeEEEcCCCcEEEEe
Confidence 111 111100011222 344443 444668999999999766543 4432222 122334456555443
No 174
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=79.51 E-value=61 Score=31.18 Aligned_cols=90 Identities=12% Similarity=0.091 Sum_probs=49.0
Q ss_pred CeeEEEcCCCCc----EEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeee-ccccccCCCcee
Q 040145 222 DSAEVLDPVKGN----WRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES-MAVGLREGWTGS 296 (402)
Q Consensus 222 ~~~~~yd~~t~~----W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~~~~ 296 (402)
..|..||..... |.+...-|.. +.+....|.+|++.-|++ ..++.||.....-.. +.. ..+ ...
T Consensus 187 G~VtlwDv~g~sp~~~~~~~HsAP~~--gicfspsne~l~vsVG~D------kki~~yD~~s~~s~~~l~y--~~P-lst 255 (673)
T KOG4378|consen 187 GAVTLWDVQGMSPIFHASEAHSAPCR--GICFSPSNEALLVSVGYD------KKINIYDIRSQASTDRLTY--SHP-LST 255 (673)
T ss_pred CeEEEEeccCCCcccchhhhccCCcC--cceecCCccceEEEeccc------ceEEEeecccccccceeee--cCC-cce
Confidence 457778776442 5544433332 222233477888887764 479999997654322 221 111 112
Q ss_pred EEEECCEEEEEeccCCcEEEEEeCCC
Q 040145 297 SVVVYEHLFVVSELERMKLKVYDPST 322 (402)
Q Consensus 297 ~~~~~~~l~~~gg~~~~~~~~yd~~~ 322 (402)
.+..++--|++.|.....++.||...
T Consensus 256 vaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 256 VAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred eeecCCceEEEeecCCceEEEEeccc
Confidence 23333334445565677899999853
No 175
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=79.49 E-value=40 Score=29.08 Aligned_cols=178 Identities=15% Similarity=0.078 Sum_probs=99.7
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF 199 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~ 199 (402)
.+..+|..+++-.+--.-. ......+.+-....|.+.|+.+ .++.+||..++..+.+.-+...+..-
T Consensus 82 ~v~vwDV~TGkv~Rr~rgH------~aqVNtV~fNeesSVv~SgsfD-------~s~r~wDCRS~s~ePiQildea~D~V 148 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFRGH------LAQVNTVRFNEESSVVASGSFD-------SSVRLWDCRSRSFEPIQILDEAKDGV 148 (307)
T ss_pred eEEEEEcccCeeeeecccc------cceeeEEEecCcceEEEecccc-------ceeEEEEcccCCCCccchhhhhcCce
Confidence 4788998887643211000 0122334442234677777763 37889999999888887777778887
Q ss_pred EEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCC
Q 040145 200 ASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPST 279 (402)
Q Consensus 200 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~ 279 (402)
..+.+.+..++.|..++ .+-.||...++-..- -+..|. ......-++.-.++|..+ ..+...|-++
T Consensus 149 ~Si~v~~heIvaGS~DG------tvRtydiR~G~l~sD-y~g~pi-t~vs~s~d~nc~La~~l~------stlrLlDk~t 214 (307)
T KOG0316|consen 149 SSIDVAEHEIVAGSVDG------TVRTYDIRKGTLSSD-YFGHPI-TSVSFSKDGNCSLASSLD------STLRLLDKET 214 (307)
T ss_pred eEEEecccEEEeeccCC------cEEEEEeecceeehh-hcCCcc-eeEEecCCCCEEEEeecc------ceeeecccch
Confidence 88888888888887644 467888876653210 011110 111112244444444332 2455566666
Q ss_pred CCeeeccccccCCCce-eEEEECCEEEEEeccCCcEEEEEeCCCCc
Q 040145 280 DNWESMAVGLREGWTG-SSVVVYEHLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 280 ~~W~~~~~~~~~~~~~-~~~~~~~~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
++--..=.......+- -++..+..-.+++|.+...++.||+...+
T Consensus 215 GklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 215 GKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred hHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccce
Confidence 5532211111111111 12445556677888877889999997653
No 176
>PRK01742 tolB translocation protein TolB; Provisional
Probab=79.21 E-value=61 Score=31.06 Aligned_cols=162 Identities=13% Similarity=0.062 Sum_probs=78.7
Q ss_pred ceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCE-EEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccc
Q 040145 118 KIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGT-LFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITAR 196 (402)
Q Consensus 118 ~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~-i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r 196 (402)
...++.+|..+..-..+...+. .. .......+++ |++....+ ...++|.+|..++..+.+..-....
T Consensus 227 ~~~i~i~dl~tg~~~~l~~~~g------~~-~~~~wSPDG~~La~~~~~~-----g~~~Iy~~d~~~~~~~~lt~~~~~~ 294 (429)
T PRK01742 227 KSQLVVHDLRSGARKVVASFRG------HN-GAPAFSPDGSRLAFASSKD-----GVLNIYVMGANGGTPSQLTSGAGNN 294 (429)
T ss_pred CcEEEEEeCCCCceEEEecCCC------cc-CceeECCCCCEEEEEEecC-----CcEEEEEEECCCCCeEeeccCCCCc
Confidence 3457788887766555543331 11 1223333554 44433221 1236899999888776664322111
Q ss_pred cceEEEEECC-EEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCE-EEEEcccccCCccCCcEEE
Q 040145 197 SFFASGVIGG-MIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGK-LLVTEGWLWPFFVSPRGQV 274 (402)
Q Consensus 197 ~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~-ly~~gG~~~~~~~~~~~~~ 274 (402)
..... .-++ .|++....++ ...++.+|..+..-+.+.. ... .....-+|+ |++.++ ..+..
T Consensus 295 ~~~~w-SpDG~~i~f~s~~~g----~~~I~~~~~~~~~~~~l~~---~~~-~~~~SpDG~~ia~~~~--------~~i~~ 357 (429)
T PRK01742 295 TEPSW-SPDGQSILFTSDRSG----SPQVYRMSASGGGASLVGG---RGY-SAQISADGKTLVMING--------DNVVK 357 (429)
T ss_pred CCEEE-CCCCCEEEEEECCCC----CceEEEEECCCCCeEEecC---CCC-CccCCCCCCEEEEEcC--------CCEEE
Confidence 11111 1233 4555543322 3456667766554333311 111 111222554 444433 25777
Q ss_pred EeCCCCCeeeccccccCCCceeEEEECCEEEEEecc
Q 040145 275 YDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSEL 310 (402)
Q Consensus 275 yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~ 310 (402)
+|+.++++..+.... . .......-+|+++++++.
T Consensus 358 ~Dl~~g~~~~lt~~~-~-~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 358 QDLTSGSTEVLSSTF-L-DESPSISPNGIMIIYSST 391 (429)
T ss_pred EECCCCCeEEecCCC-C-CCCceECCCCCEEEEEEc
Confidence 999998887664321 1 122223446777776654
No 177
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=78.81 E-value=50 Score=29.85 Aligned_cols=235 Identities=16% Similarity=0.112 Sum_probs=121.1
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEEECC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQ 182 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~ 182 (402)
.+.+.+|...+.. ...+||+.+.+-...-.-+. -++.++..++..+| .+|..=. +.+....-+-+||..
T Consensus 16 ~~~avafaRRPG~---~~~v~D~~~g~~~~~~~a~~----gRHFyGHg~fs~dG~~LytTEn---d~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 16 RPEAVAFARRPGT---FALVFDCRTGQLLQRLWAPP----GRHFYGHGVFSPDGRLLYTTEN---DYETGRGVIGVYDAA 85 (305)
T ss_pred CCeEEEEEeCCCc---EEEEEEcCCCceeeEEcCCC----CCEEecCEEEcCCCCEEEEecc---ccCCCcEEEEEEECc
Confidence 5667777655443 36789998887543222232 23656655554455 5555432 223456678899998
Q ss_pred CCceeecCCCcc-cccceEEEEE-CC-EEEE-EcCCCCC----CC------CCCeeEEEcCCCCcEEEcCCCCCC----C
Q 040145 183 KNRWTVMNKMIT-ARSFFASGVI-GG-MIYV-AGGSSAD----LF------ELDSAEVLDPVKGNWRTIASMGTN----M 244 (402)
Q Consensus 183 t~~W~~~~~~~~-~r~~~~~~~~-~~-~iyv-~GG~~~~----~~------~~~~~~~yd~~t~~W~~~~~~~~~----~ 244 (402)
+..+++...+. ....|-+... ++ .|.| -||..-. .. -..++-..|..+++-..--.+|.. -
T Consensus 86 -~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 86 -RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred -CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 66677666553 3444555554 33 3443 3665211 11 123455567777764333233332 2
Q ss_pred cceeEEEECCEEEEEcccccCCc-cCCcEEEEeCCCCCeeecc--ccc---cCCCceeEEEE-CCEEEEEeccCCcEEEE
Q 040145 245 ASYDAAVLDGKLLVTEGWLWPFF-VSPRGQVYDPSTDNWESMA--VGL---REGWTGSSVVV-YEHLFVVSELERMKLKV 317 (402)
Q Consensus 245 ~~~~~~~~~g~ly~~gG~~~~~~-~~~~~~~yd~~~~~W~~~~--~~~---~~~~~~~~~~~-~~~l~~~gg~~~~~~~~ 317 (402)
..|-++.-+|.+.+-.-+.++.. ...-+..++..+. -+.+. ... -..+.++.++. ++..+.+..--++.+.+
T Consensus 165 iRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred eeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 23444444566655443333221 1222333333321 22222 101 11233333332 45556554444678999
Q ss_pred EeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecC
Q 040145 318 YDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRN 356 (402)
Q Consensus 318 yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~ 356 (402)
||..+..|.... +++. .|+++..++..++..|.
T Consensus 244 ~d~~tg~~~~~~--~l~D----~cGva~~~~~f~~ssG~ 276 (305)
T PF07433_consen 244 WDAATGRLLGSV--PLPD----ACGVAPTDDGFLVSSGQ 276 (305)
T ss_pred EECCCCCEeecc--ccCc----eeeeeecCCceEEeCCC
Confidence 999999998876 5653 46666666665555553
No 178
>PRK10115 protease 2; Provisional
Probab=78.70 E-value=84 Score=32.36 Aligned_cols=188 Identities=9% Similarity=-0.026 Sum_probs=90.6
Q ss_pred CceEEEEECCCCcee--ecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcC--CCCcEEEcCCCCCCCcce
Q 040145 173 LDLVLKYEMQKNRWT--VMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDP--VKGNWRTIASMGTNMASY 247 (402)
Q Consensus 173 ~~~~~~~d~~t~~W~--~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~--~t~~W~~~~~~~~~~~~~ 247 (402)
..++++++..|+.-. .+-.-............ +++..++...... .+.++.|+. .+..|..+-..+.. ...
T Consensus 198 ~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~-~~~ 273 (686)
T PRK10115 198 PYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASAT---TSEVLLLDAELADAEPFVFLPRRKD-HEY 273 (686)
T ss_pred CCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCc---cccEEEEECcCCCCCceEEEECCCC-CEE
Confidence 468999999988321 12111111122222223 4443334333221 456788773 23444333222221 112
Q ss_pred eEEEECCEEEEEcccccCCccCCcEEEEeCC-CCCeeeccccccCCCceeEEEECCEEEEEeccC-CcEEEEEeCCCCce
Q 040145 248 DAAVLDGKLLVTEGWLWPFFVSPRGQVYDPS-TDNWESMAVGLREGWTGSSVVVYEHLFVVSELE-RMKLKVYDPSTDSW 325 (402)
Q Consensus 248 ~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~-~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~-~~~~~~yd~~~~~W 325 (402)
.....++.+|+.-....+ ...+...++. .+.|+.+-++-...........++.|++..-.. ...++++|..++..
T Consensus 274 ~~~~~~~~ly~~tn~~~~---~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~~~~~ 350 (686)
T PRK10115 274 SLDHYQHRFYLRSNRHGK---NFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRKTREV 350 (686)
T ss_pred EEEeCCCEEEEEEcCCCC---CceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcCCCCce
Confidence 233346788887544322 2257777776 578988765322222222344578877775433 35688888766555
Q ss_pred eecCCCCCCccccCCeEE-EE--eC-CEEEEEecCceeeeEEEEecccccc
Q 040145 326 ETIEGPPLPEQICKPFAV-NA--CD-CRVYVVGRNLHVAVGHITRLSTSEK 372 (402)
Q Consensus 326 ~~~~~~~~p~~~~~~~~~-~~--~~-~~i~v~GG~~~~~~~~v~~~~~~~~ 372 (402)
..+. ++.. .....+ .. .+ +.+++.-. .-....+++.||...+
T Consensus 351 ~~l~---~~~~-~~~~~~~~~~~~~~~~~~~~~s-s~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 351 IGIA---FDDP-AYVTWIAYNPEPETSRLRYGYS-SMTTPDTLFELDMDTG 396 (686)
T ss_pred EEec---CCCC-ceEeeecccCCCCCceEEEEEe-cCCCCCEEEEEECCCC
Confidence 5443 2111 111111 11 22 34443332 2333477888887555
No 179
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=78.09 E-value=68 Score=30.93 Aligned_cols=101 Identities=12% Similarity=0.145 Sum_probs=56.1
Q ss_pred ceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcc--cccceEEEEECCEEEEEcCCCCCCCCCCeeE
Q 040145 148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMIT--ARSFFASGVIGGMIYVAGGSSADLFELDSAE 225 (402)
Q Consensus 148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 225 (402)
...+-+..++.-+++||. .+.+-+||..+-+=+.-..++. +-++.-++..+.++.+..-. ...+.
T Consensus 468 iRSckL~pdgrtLivGGe-------astlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccs------dGnI~ 534 (705)
T KOG0639|consen 468 IRSCKLLPDGRTLIVGGE-------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCS------DGNIA 534 (705)
T ss_pred eeeeEecCCCceEEeccc-------cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeecc------CCcEE
Confidence 345555568889999997 3478888887765444334443 22222222334454433322 23478
Q ss_pred EEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccc
Q 040145 226 VLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWL 263 (402)
Q Consensus 226 ~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~ 263 (402)
+||....+ .+..++..-.+..+..+ +|.=+..||.+
T Consensus 535 vwDLhnq~--~VrqfqGhtDGascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 535 VWDLHNQT--LVRQFQGHTDGASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred EEEcccce--eeecccCCCCCceeEEecCCCceeecCCCc
Confidence 88887765 33344444444444444 46656678764
No 180
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=77.91 E-value=64 Score=33.59 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=22.7
Q ss_pred eEEEECCEEEEEcccccCCccCCcEEEEeCCCC--Ceeecc
Q 040145 248 DAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTD--NWESMA 286 (402)
Q Consensus 248 ~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~--~W~~~~ 286 (402)
+-++.+|.||+.... +.++++|.+++ .|+.-.
T Consensus 189 TPlvvgg~lYv~t~~-------~~V~ALDa~TGk~lW~~d~ 222 (764)
T TIGR03074 189 TPLKVGDTLYLCTPH-------NKVIALDAATGKEKWKFDP 222 (764)
T ss_pred CCEEECCEEEEECCC-------CeEEEEECCCCcEEEEEcC
Confidence 345679999997653 36888888876 487544
No 181
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=77.16 E-value=50 Score=28.92 Aligned_cols=195 Identities=12% Similarity=0.200 Sum_probs=93.9
Q ss_pred cCCEEEE--EeCccCCCCCCCceEEEEECCCC-ceee---cCCC----c-ccccceEEEEECCEEEEEcCC-CCCCCCCC
Q 040145 155 REGTLFV--CGGMVSDVDCPLDLVLKYEMQKN-RWTV---MNKM----I-TARSFFASGVIGGMIYVAGGS-SADLFELD 222 (402)
Q Consensus 155 ~~~~i~v--~GG~~~~~~~~~~~~~~~d~~t~-~W~~---~~~~----~-~~r~~~~~~~~~~~iyv~GG~-~~~~~~~~ 222 (402)
.++.||. .+|. ..+-+.+.-.|+=....+ +|+. +.++ | ..-++.++.++++++|.+--. .-......
T Consensus 24 y~~VIYAPfM~~~-RHGv~~LhvaWVkSgDdG~TWttPEwLtd~H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a~~km~ 102 (367)
T PF12217_consen 24 YDNVIYAPFMAGD-RHGVDNLHVAWVKSGDDGQTWTTPEWLTDLHPDYPTVNYHCMSMGVVGNRLFAVIETRTVASNKMV 102 (367)
T ss_dssp ETTEEEEEEEEES-SSSSTT-EEEEEEESSTTSS----EESS---TTTTTEEEE-B-EEEETTEEEEEEEEEETTT--EE
T ss_pred ecCeeeccccccc-ccCccceEEEEEEecCCCCcccCchhhhhcCCCCCccceeeeeeeeecceeeEEEeehhhhhhhhh
Confidence 3777774 2222 233344556667666654 6764 2221 1 234556788899999987433 11111245
Q ss_pred eeEEEc---CCCCcEEE--cCCCCC-------CCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCee-------
Q 040145 223 SAEVLD---PVKGNWRT--IASMGT-------NMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWE------- 283 (402)
Q Consensus 223 ~~~~yd---~~t~~W~~--~~~~~~-------~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~------- 283 (402)
..+.|| ...+.|+. ++..+. ....|+-+.+++.-|.+|-.+++-....-...|=. +.|.
T Consensus 103 ~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs--~~~~sp~~~vr 180 (367)
T PF12217_consen 103 RAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFS--DAFASPGVFVR 180 (367)
T ss_dssp EEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEET--TTTT-TT--EE
T ss_pred hhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEec--ccccCCcceee
Confidence 556666 35677865 344443 23456677788888888876654333222233321 1222
Q ss_pred -eccccccCCCceeE-EEECCEEEEEeccC-----CcEEEEEeCCCCceeecCCCCCCcccc-CCeEEEEeCCEEEEEec
Q 040145 284 -SMAVGLREGWTGSS-VVVYEHLFVVSELE-----RMKLKVYDPSTDSWETIEGPPLPEQIC-KPFAVNACDCRVYVVGR 355 (402)
Q Consensus 284 -~~~~~~~~~~~~~~-~~~~~~l~~~gg~~-----~~~~~~yd~~~~~W~~~~~~~~p~~~~-~~~~~~~~~~~i~v~GG 355 (402)
.++..........+ -..+|+||+..... +..+.+-+.....|.-+. .|.... ...-.+..++.||++|-
T Consensus 181 r~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slr---fp~nvHhtnlPFakvgD~l~mFgs 257 (367)
T PF12217_consen 181 RIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLR---FPNNVHHTNLPFAKVGDVLYMFGS 257 (367)
T ss_dssp EE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE----TT---SS---EEEETTEEEEEEE
T ss_pred eechhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcc---ccccccccCCCceeeCCEEEEEec
Confidence 23333333333344 36799999985432 346667677777899875 443211 12245578999999995
No 182
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=75.19 E-value=55 Score=28.46 Aligned_cols=160 Identities=13% Similarity=0.126 Sum_probs=87.8
Q ss_pred CeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCC----CCCeeeccccccCCCceeE
Q 040145 222 DSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPS----TDNWESMAVGLREGWTGSS 297 (402)
Q Consensus 222 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~----~~~W~~~~~~~~~~~~~~~ 297 (402)
..+.+.....+.|.+=+... ++++|++.+.. ...+..|... .+.|...-. .|..+.+..
T Consensus 10 ~~~~~~~~~~GsWmrDpl~~-----------~~r~~~~~~~~-----~~~l~E~~~~~~~~~~~~~~~~~-lp~~~~gTg 72 (249)
T KOG3545|consen 10 VTVKTAGPRFGAWMRDPLPA-----------DDRIYVMNYFD-----GLMLTEYTNLEDFKRGRKAEKYR-LPYSWDGTG 72 (249)
T ss_pred eEEEeeccccceeecCCCcc-----------cCceEEecccc-----CceEEEeccHHHhhccCcceEEe-CCCCccccc
Confidence 34555666667786532211 66788885443 2355556542 334444433 566666666
Q ss_pred -EEECCEEEEEeccCCcEEEEEeCCCC---ceeecCCCCCCccc---cCC---eEEEEeCCEEEEEe-cCceeeeEEEEe
Q 040145 298 -VVVYEHLFVVSELERMKLKVYDPSTD---SWETIEGPPLPEQI---CKP---FAVNACDCRVYVVG-RNLHVAVGHITR 366 (402)
Q Consensus 298 -~~~~~~l~~~gg~~~~~~~~yd~~~~---~W~~~~~~~~p~~~---~~~---~~~~~~~~~i~v~G-G~~~~~~~~v~~ 366 (402)
++.+|.+|.-.+. +..+..||..+. .|..++........ ..+ .-.++..+-|+++= ...+.....+..
T Consensus 73 ~VVynGs~yynk~~-t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~sk 151 (249)
T KOG3545|consen 73 HVVYNGSLYYNKAG-TRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLSK 151 (249)
T ss_pred eEEEcceEEeeccC-CcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcEEeec
Confidence 8889999876543 667889999873 35555432211110 011 13344444455554 333444444688
Q ss_pred cccccccCceeeeEEEEeCCCCCCCccccceeEEeC
Q 040145 367 LSTSEKKWSFSVQWQVVDAPDNFSDLTPSSSQVLFA 402 (402)
Q Consensus 367 ~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 402 (402)
+||... .-..+|..--.+++..+ ...-|.+|+|
T Consensus 152 Ldp~tl--~~e~tW~T~~~k~~~~~-aF~iCGvLY~ 184 (249)
T KOG3545|consen 152 LDPETL--EVERTWNTTLPKRSAGN-AFMICGVLYV 184 (249)
T ss_pred cCHHHh--heeeeeccccCCCCcCc-eEEEeeeeEE
Confidence 887222 34558877666666665 5555666654
No 183
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=74.80 E-value=70 Score=29.44 Aligned_cols=143 Identities=11% Similarity=0.164 Sum_probs=76.0
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccc--eEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCC-
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSF--FASGVIGGMIYVAGGSSADLFELDSAEVLDPVKG- 232 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~- 232 (402)
+..+.+.||.+ +..++|+..++.|-- .++.-.-. ...-.+++.+++.|+. ...+.+++..++
T Consensus 75 ~~~l~aTGGgD-------D~AflW~~~~ge~~~--eltgHKDSVt~~~FshdgtlLATGdm------sG~v~v~~~stg~ 139 (399)
T KOG0296|consen 75 NNNLVATGGGD-------DLAFLWDISTGEFAG--ELTGHKDSVTCCSFSHDGTLLATGDM------SGKVLVFKVSTGG 139 (399)
T ss_pred CCceEEecCCC-------ceEEEEEccCCccee--EecCCCCceEEEEEccCceEEEecCC------CccEEEEEcccCc
Confidence 66788888873 267889999888532 22211111 1222357788888887 445666766655
Q ss_pred -cEEEcCCCCCCCcceeEEEE-CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEec
Q 040145 233 -NWRTIASMGTNMASYDAAVL-DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSE 309 (402)
Q Consensus 233 -~W~~~~~~~~~~~~~~~~~~-~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg 309 (402)
.|....++...- + ..-+ -+.|+++|..++ +++.|.+.++.-.++=.....+ .... ..-+|+..+. |
T Consensus 140 ~~~~~~~e~~die--W-l~WHp~a~illAG~~DG------svWmw~ip~~~~~kv~~Gh~~~-ct~G~f~pdGKr~~t-g 208 (399)
T KOG0296|consen 140 EQWKLDQEVEDIE--W-LKWHPRAHILLAGSTDG------SVWMWQIPSQALCKVMSGHNSP-CTCGEFIPDGKRILT-G 208 (399)
T ss_pred eEEEeecccCceE--E-EEecccccEEEeecCCC------cEEEEECCCcceeeEecCCCCC-cccccccCCCceEEE-E
Confidence 465432221110 0 0001 345666665432 6888887775333322111111 1111 2235666655 4
Q ss_pred cCCcEEEEEeCCCCc
Q 040145 310 LERMKLKVYDPSTDS 324 (402)
Q Consensus 310 ~~~~~~~~yd~~~~~ 324 (402)
++...+.++|+++.+
T Consensus 209 y~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 209 YDDGTIIVWNPKTGQ 223 (399)
T ss_pred ecCceEEEEecCCCc
Confidence 446689999998874
No 184
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=72.55 E-value=93 Score=30.16 Aligned_cols=214 Identities=14% Similarity=0.050 Sum_probs=106.3
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCC-----ceeecCCCccc-ccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcC
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKN-----RWTVMNKMITA-RSFFASGVIGGMIYVAGGSSADLFELDSAEVLDP 229 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~-----~W~~~~~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~ 229 (402)
.|-=|+.||.+ .++-.||+.-- ..+.+.|.-.. .......+-++.|+|+.|. ...-+||-
T Consensus 178 ~GaR~~sGs~D-------y~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~-------aqakl~DR 243 (641)
T KOG0772|consen 178 SGARFVSGSLD-------YTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS-------AQAKLLDR 243 (641)
T ss_pred CCceeeecccc-------ceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC-------cceeEEcc
Confidence 45566777763 25666666422 23444332211 1111222347899999884 44567777
Q ss_pred CCCcEEEcC-------CCCCCCcceeEEEE-------CCEEEEEcccccCCccCCcEEEEeCCCC--Ceeeccc-cccCC
Q 040145 230 VKGNWRTIA-------SMGTNMASYDAAVL-------DGKLLVTEGWLWPFFVSPRGQVYDPSTD--NWESMAV-GLREG 292 (402)
Q Consensus 230 ~t~~W~~~~-------~~~~~~~~~~~~~~-------~g~ly~~gG~~~~~~~~~~~~~yd~~~~--~W~~~~~-~~~~~ 292 (402)
.-..|.+.. +|.... +|.+.+. +...|+..+.++ .+-++|...- +-+-+.+ +....
T Consensus 244 dG~~~~e~~KGDQYI~Dm~nTK-GHia~lt~g~whP~~k~~FlT~s~Dg------tlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 244 DGFEIVEFSKGDQYIRDMYNTK-GHIAELTCGCWHPDNKEEFLTCSYDG------TLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred CCceeeeeeccchhhhhhhccC-CceeeeeccccccCcccceEEecCCC------cEEEEecCCchhheeEEeeccCCCc
Confidence 666676541 222211 2222211 233555555432 2333443221 1111111 22233
Q ss_pred CceeE-EEE--CCEEEEEeccCCcEEEEEeCCCCceeecCCCC-----CCccccCCeEEEEeCCEEEEEecCceeeeEEE
Q 040145 293 WTGSS-VVV--YEHLFVVSELERMKLKVYDPSTDSWETIEGPP-----LPEQICKPFAVNACDCRVYVVGRNLHVAVGHI 364 (402)
Q Consensus 293 ~~~~~-~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~-----~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v 364 (402)
+.... |.. ++++ +.+|....+|..+|.. .|..-+.+- .+. .-..+..+.++|++++--|.+.. ..|
T Consensus 317 Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~--~~~v~p~~~vk~AH~~g-~~Itsi~FS~dg~~LlSRg~D~t--LKv 390 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKL-IAAGCLDGSIQIWDKG--SRTVRPVMKVKDAHLPG-QDITSISFSYDGNYLLSRGFDDT--LKV 390 (641)
T ss_pred ccCceeeecCCCcch-hhhcccCCceeeeecC--CcccccceEeeeccCCC-CceeEEEeccccchhhhccCCCc--eee
Confidence 33333 544 5666 4556555677777763 343322111 111 01223344578888887776655 468
Q ss_pred EecccccccCceeeeEEEEeCCCCCCCccccceeE
Q 040145 365 TRLSTSEKKWSFSVQWQVVDAPDNFSDLTPSSSQV 399 (402)
Q Consensus 365 ~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 399 (402)
|.++...+ .-.+|.-|+.+....+++.+-.+-
T Consensus 391 WDLrq~kk---pL~~~tgL~t~~~~tdc~FSPd~k 422 (641)
T KOG0772|consen 391 WDLRQFKK---PLNVRTGLPTPFPGTDCCFSPDDK 422 (641)
T ss_pred eecccccc---chhhhcCCCccCCCCccccCCCce
Confidence 88875433 556888899988877766644333
No 185
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=72.54 E-value=65 Score=28.09 Aligned_cols=210 Identities=10% Similarity=0.080 Sum_probs=100.4
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF 199 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~ 199 (402)
.+-.||..++.=.++....... ....++.+-.+|+-...||.++ .+-++|...-.-.+.-..+.+- -
T Consensus 62 hvRlyD~~S~np~Pv~t~e~h~----kNVtaVgF~~dgrWMyTgseDg-------t~kIWdlR~~~~qR~~~~~spV--n 128 (311)
T KOG0315|consen 62 HVRLYDLNSNNPNPVATFEGHT----KNVTAVGFQCDGRWMYTGSEDG-------TVKIWDLRSLSCQRNYQHNSPV--N 128 (311)
T ss_pred eeEEEEccCCCCCceeEEeccC----CceEEEEEeecCeEEEecCCCc-------eEEEEeccCcccchhccCCCCc--c
Confidence 3668888877544333333211 3344555545778777887632 5667776552222211111111 1
Q ss_pred EEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCccee-EEEE-CCEEEEEcccccCCccCCcEEEEeC
Q 040145 200 ASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYD-AAVL-DGKLLVTEGWLWPFFVSPRGQVYDP 277 (402)
Q Consensus 200 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~-~~~~-~g~ly~~gG~~~~~~~~~~~~~yd~ 277 (402)
+++...++--++.|-. ...+.++|..++.-... .+|....... .++. +|++.+.+... -.++++++
T Consensus 129 ~vvlhpnQteLis~dq-----sg~irvWDl~~~~c~~~-liPe~~~~i~sl~v~~dgsml~a~nnk------G~cyvW~l 196 (311)
T KOG0315|consen 129 TVVLHPNQTELISGDQ-----SGNIRVWDLGENSCTHE-LIPEDDTSIQSLTVMPDGSMLAAANNK------GNCYVWRL 196 (311)
T ss_pred eEEecCCcceEEeecC-----CCcEEEEEccCCccccc-cCCCCCcceeeEEEcCCCcEEEEecCC------ccEEEEEc
Confidence 2222233322333321 45689999998875433 2333333322 3333 66655543321 25778877
Q ss_pred CCCCe-eeccc--cccC-CCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEE-EeCCEE
Q 040145 278 STDNW-ESMAV--GLRE-GWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVN-ACDCRV 350 (402)
Q Consensus 278 ~~~~W-~~~~~--~~~~-~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~~i 350 (402)
-+++- +++.+ ..+. .++...|.+ +++.+...+ +...+.+++.++. .+ +. ..+....|..-.++ ..+++-
T Consensus 197 ~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s-sdktv~iwn~~~~-~k-le-~~l~gh~rWvWdc~FS~dg~Y 272 (311)
T KOG0315|consen 197 LNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS-SDKTVKIWNTDDF-FK-LE-LVLTGHQRWVWDCAFSADGEY 272 (311)
T ss_pred cCCCccccceEhhheecccceEEEEEECCCCcEEEeec-CCceEEEEecCCc-ee-eE-EEeecCCceEEeeeeccCccE
Confidence 65432 22222 0111 122222433 455444444 3668889988876 22 21 12333324444444 456666
Q ss_pred EEEecCce
Q 040145 351 YVVGRNLH 358 (402)
Q Consensus 351 ~v~GG~~~ 358 (402)
+|.|+.++
T Consensus 273 lvTassd~ 280 (311)
T KOG0315|consen 273 LVTASSDH 280 (311)
T ss_pred EEecCCCC
Confidence 66666553
No 186
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=72.26 E-value=78 Score=28.84 Aligned_cols=187 Identities=13% Similarity=0.101 Sum_probs=92.0
Q ss_pred ceEEEEECCCCceeecCCCcccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCc-EEEcC----CCCCCCcc
Q 040145 174 DLVLKYEMQKNRWTVMNKMITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGN-WRTIA----SMGTNMAS 246 (402)
Q Consensus 174 ~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~----~~~~~~~~ 246 (402)
..++.||+.++.-+.... |... .+.... ++.|+++ ...+..++++++. |+.+. ..+..|..
T Consensus 47 ~~i~r~~~~~g~~~~~~~-p~~~--~~~~~~d~~g~Lv~~---------~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~N 114 (307)
T COG3386 47 GRIHRLDPETGKKRVFPS-PGGF--SSGALIDAGGRLIAC---------EHGVRLLDPDTGGKITLLAEPEDGLPLNRPN 114 (307)
T ss_pred CeEEEecCCcCceEEEEC-CCCc--ccceeecCCCeEEEE---------ccccEEEeccCCceeEEeccccCCCCcCCCC
Confidence 378888888765433221 1111 222222 3455554 2345566665443 35543 33445555
Q ss_pred eeEEEECCEEEEEccc-----ccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECC-EEEEEeccCCcEEEEEeC
Q 040145 247 YDAAVLDGKLLVTEGW-----LWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYE-HLFVVSELERMKLKVYDP 320 (402)
Q Consensus 247 ~~~~~~~g~ly~~gG~-----~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~l~~~gg~~~~~~~~yd~ 320 (402)
-..+--+|.+|+-.-. .......-.++.||+ .+...++.......-.+.+..-++ .+|+. -...+.+++|+.
T Consensus 115 D~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~a-DT~~~~i~r~~~ 192 (307)
T COG3386 115 DGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVA-DTPANRIHRYDL 192 (307)
T ss_pred ceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEE-eCCCCeEEEEec
Confidence 5566667888886443 111122236899998 455555443211111222233355 55555 433678888877
Q ss_pred CC--------CceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEecccccccCceeeeEEEEeCCC
Q 040145 321 ST--------DSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVVDAPD 387 (402)
Q Consensus 321 ~~--------~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W~~~~~~~ 387 (402)
.. +.+.... ..+. .--..++-.+|.|++...... ..|.+|+|..+ .=.++..|.
T Consensus 193 d~~~g~~~~~~~~~~~~---~~~G-~PDG~~vDadG~lw~~a~~~g---~~v~~~~pdG~------l~~~i~lP~ 254 (307)
T COG3386 193 DPATGPIGGRRGFVDFD---EEPG-LPDGMAVDADGNLWVAAVWGG---GRVVRFNPDGK------LLGEIKLPV 254 (307)
T ss_pred CcccCccCCcceEEEcc---CCCC-CCCceEEeCCCCEEEecccCC---ceEEEECCCCc------EEEEEECCC
Confidence 63 1111111 1111 111234456888997554332 34888887533 334466663
No 187
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=70.13 E-value=45 Score=32.65 Aligned_cols=115 Identities=12% Similarity=0.102 Sum_probs=62.8
Q ss_pred ccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEEC--CEEEEEcccccCCccC
Q 040145 194 TARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLD--GKLLVTEGWLWPFFVS 269 (402)
Q Consensus 194 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~--g~ly~~gG~~~~~~~~ 269 (402)
.|+.+..++.. .-.||++|. ..+++.++.+.+.|-.. +........++.+| ..|+++|+..
T Consensus 132 IP~~GRDm~y~~~scDly~~gs-------g~evYRlNLEqGrfL~P--~~~~~~~lN~v~in~~hgLla~Gt~~------ 196 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGS-------GSEVYRLNLEQGRFLNP--FETDSGELNVVSINEEHGLLACGTED------ 196 (703)
T ss_pred cCcCCccccccCCCccEEEeec-------CcceEEEEccccccccc--cccccccceeeeecCccceEEecccC------
Confidence 34444444432 336777765 57899999999988432 22221222233332 4577888754
Q ss_pred CcEEEEeCCCCCe-eeccc--c---ccCC---CceeEEEE-CCEEEEEeccCCcEEEEEeCCCC
Q 040145 270 PRGQVYDPSTDNW-ESMAV--G---LREG---WTGSSVVV-YEHLFVVSELERMKLKVYDPSTD 323 (402)
Q Consensus 270 ~~~~~yd~~~~~W-~~~~~--~---~~~~---~~~~~~~~-~~~l~~~gg~~~~~~~~yd~~~~ 323 (402)
..++.+|+.+..- ..+.. . .|.. ..-.+..+ ++-|-+.-|.....+++||+.+.
T Consensus 197 g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 197 GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC
Confidence 3688899876532 22221 1 1111 11122334 44666666766778999998754
No 188
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=70.13 E-value=49 Score=28.83 Aligned_cols=62 Identities=16% Similarity=0.196 Sum_probs=38.5
Q ss_pred CCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccc--eEEEE-ECCEEEEEcCCCC
Q 040145 146 HGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSF--FASGV-IGGMIYVAGGSSA 216 (402)
Q Consensus 146 ~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~--~~~~~-~~~~iyv~GG~~~ 216 (402)
....++.+..+..+||+||.+. -+++||..|+.=... ....... |++-. -++.+|..|..++
T Consensus 225 ~nV~SASL~P~k~~fVaGged~-------~~~kfDy~TgeEi~~--~nkgh~gpVhcVrFSPdGE~yAsGSEDG 289 (334)
T KOG0278|consen 225 CNVESASLHPKKEFFVAGGEDF-------KVYKFDYNTGEEIGS--YNKGHFGPVHCVRFSPDGELYASGSEDG 289 (334)
T ss_pred cccccccccCCCceEEecCcce-------EEEEEeccCCceeee--cccCCCCceEEEEECCCCceeeccCCCc
Confidence 4445566655779999999732 688899999864333 1112222 22222 2788999987655
No 189
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=69.38 E-value=33 Score=26.75 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=38.1
Q ss_pred CEEEEEcccccCCccCCcEEEEeCCCCC---eeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCc--eeec
Q 040145 254 GKLLVTEGWLWPFFVSPRGQVYDPSTDN---WESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDS--WETI 328 (402)
Q Consensus 254 g~ly~~gG~~~~~~~~~~~~~yd~~~~~---W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~--W~~~ 328 (402)
..+.++|-. +.+.+||...+. +++++.....-..+........+.++||.. .+.-||.+.++ |+..
T Consensus 64 ~D~LliGt~-------t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGnc--si~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 64 RDCLLIGTQ-------TSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNC--SIQGFDYEGNEIFWTVT 134 (136)
T ss_pred cCEEEEecc-------ceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceE--EEEEeCCCCcEEEEEec
Confidence 356677753 489999998875 455543111111110011246688888854 78888887653 7654
No 190
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=69.14 E-value=90 Score=28.30 Aligned_cols=129 Identities=16% Similarity=0.236 Sum_probs=76.0
Q ss_pred CCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE--CC-EEEEEcCCCCCCCCCC
Q 040145 146 HGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI--GG-MIYVAGGSSADLFELD 222 (402)
Q Consensus 146 ~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~ 222 (402)
..|+.++......+.+|+.. +-.-+++||+.+++-...-..+..|++++-.++ ++ .+|..-..-.. ...
T Consensus 6 RgH~~a~~p~~~~avafaRR------PG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~--g~G 77 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARR------PGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYET--GRG 77 (305)
T ss_pred cccceeeCCCCCeEEEEEeC------CCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCC--CcE
Confidence 45666666556788888876 344688999999975543334566766544443 44 56665443221 145
Q ss_pred eeEEEcCCCCcEEEcCCCCCCCc-ceeEEEE-CC-EEEE-EcccccC----------CccCCcEEEEeCCCCCee
Q 040145 223 SAEVLDPVKGNWRTIASMGTNMA-SYDAAVL-DG-KLLV-TEGWLWP----------FFVSPRGQVYDPSTDNWE 283 (402)
Q Consensus 223 ~~~~yd~~t~~W~~~~~~~~~~~-~~~~~~~-~g-~ly~-~gG~~~~----------~~~~~~~~~yd~~~~~W~ 283 (402)
-+-+||.. +...++.+.+...- -|..... +| .|.| -||.... .....++...|..+++-.
T Consensus 78 ~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll 151 (305)
T PF07433_consen 78 VIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALL 151 (305)
T ss_pred EEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCcee
Confidence 68899998 67888877766433 3445444 55 2333 3554311 112235666777777643
No 191
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=68.06 E-value=1e+02 Score=28.64 Aligned_cols=83 Identities=10% Similarity=0.009 Sum_probs=45.8
Q ss_pred cCCCCCeEEEEEEe-----CCCCceeEEEeecCCCcEEeCCCCCCCCCC-CCCCceEEEEccCC-EEEEEeCccCCCCCC
Q 040145 100 LGFKDPWLFVFAFH-----KCTGKIQWQVLDLTHYCWHTIPAMPCKDKV-CPHGFRCVSIPREG-TLFVCGGMVSDVDCP 172 (402)
Q Consensus 100 ~~~~~~~l~~~gg~-----~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~-~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~ 172 (402)
++..+..+|+.... .+.....+.+||+.+.+-..--++|..++. ....-...++..+| .+|+.. . .+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n-~-----~p 126 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQ-F-----SP 126 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEec-C-----CC
Confidence 44457788988641 223455688999999876432223322110 00111233333355 566652 2 24
Q ss_pred CceEEEEECCCCceee
Q 040145 173 LDLVLKYEMQKNRWTV 188 (402)
Q Consensus 173 ~~~~~~~d~~t~~W~~ 188 (402)
.+.+-+.|..+++-..
T Consensus 127 ~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 127 SPAVGVVDLEGKAFVR 142 (352)
T ss_pred CCEEEEEECCCCcEEE
Confidence 5689999999987544
No 192
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=67.81 E-value=1.1e+02 Score=28.80 Aligned_cols=102 Identities=18% Similarity=0.135 Sum_probs=49.1
Q ss_pred CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCceeecCCCC
Q 040145 253 DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPP 332 (402)
Q Consensus 253 ~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~ 332 (402)
+|++...+.++ .+.-.||..+++=--........-++.+...+|.+...||.+ ..-.++|..+..=..+
T Consensus 272 sG~~L~TasfD------~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD-~~~RvWDlRtgr~im~---- 340 (459)
T KOG0272|consen 272 SGKFLGTASFD------STWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLD-SLGRVWDLRTGRCIMF---- 340 (459)
T ss_pred CCceeeecccc------cchhhcccccchhhHhhcccccccceeEecCCCceeeccCcc-chhheeecccCcEEEE----
Confidence 67776665543 233445555543111111122222333345689999999985 2344556665533222
Q ss_pred CCccccCCeEEE-EeCCEEEEEecCceeeeEEEEec
Q 040145 333 LPEQICKPFAVN-ACDCRVYVVGRNLHVAVGHITRL 367 (402)
Q Consensus 333 ~p~~~~~~~~~~-~~~~~i~v~GG~~~~~~~~v~~~ 367 (402)
+......-+++. ..+|..+..||.++. ..||++
T Consensus 341 L~gH~k~I~~V~fsPNGy~lATgs~Dnt--~kVWDL 374 (459)
T KOG0272|consen 341 LAGHIKEILSVAFSPNGYHLATGSSDNT--CKVWDL 374 (459)
T ss_pred ecccccceeeEeECCCceEEeecCCCCc--EEEeee
Confidence 111112223333 356777777776554 344444
No 193
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=67.81 E-value=83 Score=27.41 Aligned_cols=182 Identities=18% Similarity=0.193 Sum_probs=99.7
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECC----CCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCC
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQ----KNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVK 231 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~----t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t 231 (402)
+.++|+..+. ....+..|... .+.+...-.+|.+-.+.+.+++++.+|.-.+. ...+..||..+
T Consensus 30 ~~r~~~~~~~------~~~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~VVynGs~yynk~~------t~~ivky~l~~ 97 (249)
T KOG3545|consen 30 DDRIYVMNYF------DGLMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHVVYNGSLYYNKAG------TRNIIKYDLET 97 (249)
T ss_pred cCceEEeccc------cCceEEEeccHHHhhccCcceEEeCCCCccccceEEEcceEEeeccC------CcceEEEEeec
Confidence 5678887443 23356666653 34566666678777788889999988887654 67788999988
Q ss_pred Cc---EEEcCCCCCC---------CcceeEEEECCEEEEEcccccCCccCCcEEEEeCCC----CCeeeccccccCCCce
Q 040145 232 GN---WRTIASMGTN---------MASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPST----DNWESMAVGLREGWTG 295 (402)
Q Consensus 232 ~~---W~~~~~~~~~---------~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~----~~W~~~~~~~~~~~~~ 295 (402)
.. |+.++.+-.. ....-.++-..-|+++--..+... ...+...|+.+ .+|..- .+....+
T Consensus 98 ~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g-~iv~skLdp~tl~~e~tW~T~---~~k~~~~ 173 (249)
T KOG3545|consen 98 RTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAG-TIVLSKLDPETLEVERTWNTT---LPKRSAG 173 (249)
T ss_pred ceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCC-cEEeeccCHHHhheeeeeccc---cCCCCcC
Confidence 43 5555432111 111123333333444322221111 11235667643 456432 2233333
Q ss_pred eEEEECCEEEEEeccCC--cEE-EEEeCCCCceeecCCCCCCccccCCeEEEE---eCCEEEEEec
Q 040145 296 SSVVVYEHLFVVSELER--MKL-KVYDPSTDSWETIEGPPLPEQICKPFAVNA---CDCRVYVVGR 355 (402)
Q Consensus 296 ~~~~~~~~l~~~gg~~~--~~~-~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~---~~~~i~v~GG 355 (402)
-+..+-|.||++-.... ..| +.||..+++=..+. +|.+.. ....+++- .+.+||+.--
T Consensus 174 ~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~-ipf~N~-y~~~~~idYNP~D~~LY~wdn 237 (249)
T KOG3545|consen 174 NAFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERID-LPFPNP-YSYATMIDYNPRDRRLYAWDN 237 (249)
T ss_pred ceEEEeeeeEEEeccccCCceEEEEEEcCCCceeccc-ccccch-hhhhhccCCCcccceeeEecC
Confidence 44567788999866542 233 78999988764443 233322 22223332 3677888764
No 194
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=67.18 E-value=1.2e+02 Score=28.83 Aligned_cols=116 Identities=13% Similarity=0.115 Sum_probs=62.4
Q ss_pred ceeEEEE-CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE--E-EECCEEEEEeccCCcEEEEEeCC
Q 040145 246 SYDAAVL-DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS--V-VVYEHLFVVSELERMKLKVYDPS 321 (402)
Q Consensus 246 ~~~~~~~-~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~--~-~~~~~l~~~gg~~~~~~~~yd~~ 321 (402)
..+++++ +|.|+..|-.+ ..+-+||+++.. .+.. .|. ..+.. + ..+|--|++-+.+...|..||+.
T Consensus 350 ~ts~~fHpDgLifgtgt~d------~~vkiwdlks~~--~~a~-Fpg-ht~~vk~i~FsENGY~Lat~add~~V~lwDLR 419 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPD------GVVKIWDLKSQT--NVAK-FPG-HTGPVKAISFSENGYWLATAADDGSVKLWDLR 419 (506)
T ss_pred eEEeeEcCCceEEeccCCC------ceEEEEEcCCcc--cccc-CCC-CCCceeEEEeccCceEEEEEecCCeEEEEEeh
Confidence 4445555 67777666543 367889998876 4443 222 22222 2 22333444444445569999996
Q ss_pred CCceeecCCCCCCccccCCeEEE--EeCCEEEEEecCceeeeEEEEecccccccCceeeeEEEEeC
Q 040145 322 TDSWETIEGPPLPEQICKPFAVN--ACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVVDA 385 (402)
Q Consensus 322 ~~~W~~~~~~~~p~~~~~~~~~~--~~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W~~~~~ 385 (402)
... -.+..+++... ..... -..|..++++|. ...||.++-..+ .|..+..
T Consensus 420 Kl~--n~kt~~l~~~~--~v~s~~fD~SGt~L~~~g~----~l~Vy~~~k~~k------~W~~~~~ 471 (506)
T KOG0289|consen 420 KLK--NFKTIQLDEKK--EVNSLSFDQSGTYLGIAGS----DLQVYICKKKTK------SWTEIKE 471 (506)
T ss_pred hhc--ccceeeccccc--cceeEEEcCCCCeEEeecc----eeEEEEEecccc------cceeeeh
Confidence 543 23322455432 22222 245678888874 344777765555 5666555
No 195
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=63.76 E-value=1.4e+02 Score=28.41 Aligned_cols=208 Identities=8% Similarity=-0.029 Sum_probs=102.5
Q ss_pred EEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECC-EEEEEcCCCCC-----CCCCCee
Q 040145 151 VSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGG-MIYVAGGSSAD-----LFELDSA 224 (402)
Q Consensus 151 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~-----~~~~~~~ 224 (402)
..+..+++.++++-..++ .-...+.++|..|++...- .+...... .++-.++ +.++....+.. ......+
T Consensus 129 ~~~Spdg~~la~~~s~~G--~e~~~l~v~Dl~tg~~l~d-~i~~~~~~-~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGG--SEWYTLRVFDLETGKFLPD-GIENPKFS-SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEETTTSSEEEEEEEETT--SSEEEEEEEETTTTEEEEE-EEEEEESE-EEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeECCCCCEEEEEecCCC--CceEEEEEEECCCCcCcCC-cccccccc-eEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 445456666665422111 1244799999999943221 11222221 1444433 33333222221 1114567
Q ss_pred EEEcCCCCcEE--EcCCCCCCCc-ceeE-EEECCEEEEEcccccCCccCCcEEEEeCCCC-----CeeeccccccCCCce
Q 040145 225 EVLDPVKGNWR--TIASMGTNMA-SYDA-AVLDGKLLVTEGWLWPFFVSPRGQVYDPSTD-----NWESMAVGLREGWTG 295 (402)
Q Consensus 225 ~~yd~~t~~W~--~~~~~~~~~~-~~~~-~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~-----~W~~~~~~~~~~~~~ 295 (402)
+.+...+..-. .+-.-+.... ...+ ..-+++..++.-..+.. .+.++..|.... .|..+..... ....
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~--~s~v~~~d~~~~~~~~~~~~~l~~~~~-~~~~ 281 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS--ESEVYLLDLDDGGSPDAKPKLLSPRED-GVEY 281 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS--EEEEEEEECCCTTTSS-SEEEEEESSS-S-EE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc--CCeEEEEeccccCCCcCCcEEEeCCCC-ceEE
Confidence 77777766543 2222222222 2222 23366654544332221 257899999875 7887765222 2233
Q ss_pred eEEEECCEEEEEeccC--CcEEEEEeCCCCc---eee-cCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEeccc
Q 040145 296 SSVVVYEHLFVVSELE--RMKLKVYDPSTDS---WET-IEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 296 ~~~~~~~~l~~~gg~~--~~~~~~yd~~~~~---W~~-~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~ 369 (402)
..-..++.+|+....+ ...+..++..... |.. +. + +.....-..+...++.|++.--.+.. ..+..++.
T Consensus 282 ~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~--~-~~~~~~l~~~~~~~~~Lvl~~~~~~~--~~l~v~~~ 356 (414)
T PF02897_consen 282 YVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI--P-EDEDVSLEDVSLFKDYLVLSYRENGS--SRLRVYDL 356 (414)
T ss_dssp EEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEETTEEEEEEEETTE--EEEEEEET
T ss_pred EEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc--C-CCCceeEEEEEEECCEEEEEEEECCc--cEEEEEEC
Confidence 3335589999886543 5688899888764 664 32 1 11112334566778888887654333 34555554
Q ss_pred c
Q 040145 370 S 370 (402)
Q Consensus 370 ~ 370 (402)
.
T Consensus 357 ~ 357 (414)
T PF02897_consen 357 D 357 (414)
T ss_dssp T
T ss_pred C
Confidence 3
No 196
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.68 E-value=1e+02 Score=26.91 Aligned_cols=18 Identities=22% Similarity=0.503 Sum_probs=13.4
Q ss_pred ceEEEEECCCCceeecCC
Q 040145 174 DLVLKYEMQKNRWTVMNK 191 (402)
Q Consensus 174 ~~~~~~d~~t~~W~~~~~ 191 (402)
..+.++.-.+++|+++..
T Consensus 80 gkVIiWke~~g~w~k~~e 97 (299)
T KOG1332|consen 80 GKVIIWKEENGRWTKAYE 97 (299)
T ss_pred ceEEEEecCCCchhhhhh
Confidence 367778888888988654
No 197
>PTZ00420 coronin; Provisional
Probab=62.99 E-value=1.7e+02 Score=29.32 Aligned_cols=150 Identities=9% Similarity=0.149 Sum_probs=72.0
Q ss_pred EEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEE
Q 040145 158 TLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRT 236 (402)
Q Consensus 158 ~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 236 (402)
.+++.||.+ ..+.+||..+++-.. .+.....-.++.. .++.+++.++. -..+.+||+.++.=
T Consensus 139 ~iLaSgS~D-------gtIrIWDl~tg~~~~--~i~~~~~V~SlswspdG~lLat~s~------D~~IrIwD~Rsg~~-- 201 (568)
T PTZ00420 139 YIMCSSGFD-------SFVNIWDIENEKRAF--QINMPKKLSSLKWNIKGNLLSGTCV------GKHMHIIDPRKQEI-- 201 (568)
T ss_pred eEEEEEeCC-------CeEEEEECCCCcEEE--EEecCCcEEEEEECCCCCEEEEEec------CCEEEEEECCCCcE--
Confidence 456666652 268899998775211 1111111222332 25677777664 34689999987642
Q ss_pred cCCCCCCCc--ceeEEE-----ECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccc-cccCCCceeE-EEE---CCEE
Q 040145 237 IASMGTNMA--SYDAAV-----LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV-GLREGWTGSS-VVV---YEHL 304 (402)
Q Consensus 237 ~~~~~~~~~--~~~~~~-----~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~~-~~~---~~~l 304 (402)
+..+..... ....+. .++..++.+|.+... .+.+..||+.+.. ..+.. .... ..+.. ... .|.+
T Consensus 202 i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~--~R~VkLWDlr~~~-~pl~~~~ld~-~~~~L~p~~D~~tg~l 277 (568)
T PTZ00420 202 ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNN--MREMKLWDLKNTT-SALVTMSIDN-ASAPLIPHYDESTGLI 277 (568)
T ss_pred EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCC--ccEEEEEECCCCC-CceEEEEecC-CccceEEeeeCCCCCE
Confidence 211111111 011111 244555655654321 2368899987421 01111 0111 11111 122 4677
Q ss_pred EEEeccCCcEEEEEeCCCCceeecC
Q 040145 305 FVVSELERMKLKVYDPSTDSWETIE 329 (402)
Q Consensus 305 ~~~gg~~~~~~~~yd~~~~~W~~~~ 329 (402)
|+.|.. ...+..|+...+.-..+.
T Consensus 278 ~lsGkG-D~tIr~~e~~~~~~~~l~ 301 (568)
T PTZ00420 278 YLIGKG-DGNCRYYQHSLGSIRKVN 301 (568)
T ss_pred EEEEEC-CCeEEEEEccCCcEEeec
Confidence 777643 557888888766444443
No 198
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=62.94 E-value=1.5e+02 Score=28.54 Aligned_cols=104 Identities=10% Similarity=-0.012 Sum_probs=57.9
Q ss_pred CCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCE-EEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEE
Q 040145 221 LDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGK-LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVV 299 (402)
Q Consensus 221 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~-ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~ 299 (402)
..+++++|..+++=.++......-. +-+..-+|+ |++.-...+ ...++.||++...=+.+........ .....
T Consensus 261 ~~~iy~~dl~~~~~~~Lt~~~gi~~-~Ps~spdG~~ivf~Sdr~G----~p~I~~~~~~g~~~~riT~~~~~~~-~p~~S 334 (425)
T COG0823 261 SPDIYLMDLDGKNLPRLTNGFGINT-SPSWSPDGSKIVFTSDRGG----RPQIYLYDLEGSQVTRLTFSGGGNS-NPVWS 334 (425)
T ss_pred CccEEEEcCCCCcceecccCCcccc-CccCCCCCCEEEEEeCCCC----CcceEEECCCCCceeEeeccCCCCc-CccCC
Confidence 5679999998877333322222111 222223454 555433222 2389999998887666654222222 23334
Q ss_pred ECCEEEEEeccC--CcEEEEEeCCCCc-eeecCC
Q 040145 300 VYEHLFVVSELE--RMKLKVYDPSTDS-WETIEG 330 (402)
Q Consensus 300 ~~~~l~~~gg~~--~~~~~~yd~~~~~-W~~~~~ 330 (402)
-+|+.+++-+.. ...+..+|+.++. |..+..
T Consensus 335 pdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~ 368 (425)
T COG0823 335 PDGDKIVFESSSGGQWDIDKNDLASGGKIRILTS 368 (425)
T ss_pred CCCCEEEEEeccCCceeeEEeccCCCCcEEEccc
Confidence 455555554422 2468899998776 887764
No 199
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=61.91 E-value=1.5e+02 Score=28.22 Aligned_cols=56 Identities=13% Similarity=0.079 Sum_probs=37.6
Q ss_pred CCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCC
Q 040145 220 ELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTD 280 (402)
Q Consensus 220 ~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~ 280 (402)
+.+.++++|..-+--.++..+-..-.-+++-..++..|++--.. .+-+.+.|++.-
T Consensus 404 ~~N~vYilDe~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfrq-----tDPlfviDlsNP 459 (603)
T COG4880 404 PVNAVYILDENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFRQ-----TDPLFVIDLSNP 459 (603)
T ss_pred ccceeEEEcCCCcEEEEEeccCCCceEEEEEEeCceEEEEEEec-----cCceEEEEcCCC
Confidence 36788899888777777766655555566666788888875432 345677777543
No 200
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=59.06 E-value=1.3e+02 Score=26.60 Aligned_cols=91 Identities=16% Similarity=0.127 Sum_probs=51.3
Q ss_pred CCeeEEEcCCCCc--EEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCC--CeeeccccccCCCcee
Q 040145 221 LDSAEVLDPVKGN--WRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTD--NWESMAVGLREGWTGS 296 (402)
Q Consensus 221 ~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~ 296 (402)
...+-..|+.++. |+.+- ..|....+.++++. .++|-+. ..++..+.+++ -|..+... .-...+
T Consensus 32 s~~~~avd~~sG~~~We~il---g~RiE~sa~vvgdf-VV~GCy~------g~lYfl~~~tGs~~w~f~~~~--~vk~~a 99 (354)
T KOG4649|consen 32 SGIVIAVDPQSGNLIWEAIL---GVRIECSAIVVGDF-VVLGCYS------GGLYFLCVKTGSQIWNFVILE--TVKVRA 99 (354)
T ss_pred CceEEEecCCCCcEEeehhh---CceeeeeeEEECCE-EEEEEcc------CcEEEEEecchhheeeeeehh--hhccce
Confidence 4557778888875 88753 34555566667766 4555543 24666666665 57655421 111112
Q ss_pred EEEECCEEEEEeccCCcEEEEEeCCCCc
Q 040145 297 SVVVYEHLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 297 ~~~~~~~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
.+..++.+...|.+ ....+..|+.+..
T Consensus 100 ~~d~~~glIycgsh-d~~~yalD~~~~~ 126 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSH-DGNFYALDPKTYG 126 (354)
T ss_pred EEcCCCceEEEecC-CCcEEEecccccc
Confidence 23444444445665 4467888887753
No 201
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=58.74 E-value=98 Score=29.42 Aligned_cols=135 Identities=13% Similarity=0.146 Sum_probs=67.2
Q ss_pred EECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE-C--CEEEEEcccccCCccCCcEEEEeCCC
Q 040145 203 VIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL-D--GKLLVTEGWLWPFFVSPRGQVYDPST 279 (402)
Q Consensus 203 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~--g~ly~~gG~~~~~~~~~~~~~yd~~~ 279 (402)
..+++.++.||. -.-+.++|..|..= +..++..|....+..+ . ..+|..+- ..++-+|+.+.
T Consensus 211 S~Dgkylatgg~------d~~v~Iw~~~t~eh--v~~~~ghr~~V~~L~fr~gt~~lys~s~-------Drsvkvw~~~~ 275 (479)
T KOG0299|consen 211 SSDGKYLATGGR------DRHVQIWDCDTLEH--VKVFKGHRGAVSSLAFRKGTSELYSASA-------DRSVKVWSIDQ 275 (479)
T ss_pred cCCCcEEEecCC------CceEEEecCcccch--hhcccccccceeeeeeecCccceeeeec-------CCceEEEehhH
Confidence 357898899987 34567888877542 2223444433333322 2 34666443 13555666555
Q ss_pred CCeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCce
Q 040145 280 DNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLH 358 (402)
Q Consensus 280 ~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~ 358 (402)
....+.--..+..-.+..+.--++...+||.+. .+..|+....+ ..+- .+.. ...-+++.+++.-||.|+.+.
T Consensus 276 ~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDr-T~rlwKi~ees-qlif---rg~~-~sidcv~~In~~HfvsGSdnG 348 (479)
T KOG0299|consen 276 LSYVETLYGHQDGVLGIDALSRERCVTVGGRDR-TVRLWKIPEES-QLIF---RGGE-GSIDCVAFINDEHFVSGSDNG 348 (479)
T ss_pred hHHHHHHhCCccceeeechhcccceEEeccccc-eeEEEeccccc-eeee---eCCC-CCeeeEEEecccceeeccCCc
Confidence 443222111122222222344677888888753 34444442111 1111 1110 122267788888899988553
No 202
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=58.22 E-value=1.5e+02 Score=26.96 Aligned_cols=28 Identities=18% Similarity=0.419 Sum_probs=18.1
Q ss_pred EEEccCCEEEEEeCccCCCCCCCceEEEEECCCCc
Q 040145 151 VSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNR 185 (402)
Q Consensus 151 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~ 185 (402)
.++++++.-.+.||.+ ..+.+||..++.
T Consensus 47 tavAVs~~~~aSGssD-------etI~IYDm~k~~ 74 (362)
T KOG0294|consen 47 TALAVSGPYVASGSSD-------ETIHIYDMRKRK 74 (362)
T ss_pred eEEEecceeEeccCCC-------CcEEEEeccchh
Confidence 3333366666666652 279999998764
No 203
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=57.94 E-value=1.5e+02 Score=26.97 Aligned_cols=99 Identities=16% Similarity=0.255 Sum_probs=58.2
Q ss_pred CCeeEEEcCCCCc-EEEcCCCCCCCcceeEEEE---CCEEEEEcccccCCccCCcEEEEeC-CCCCeeeccccccCCCce
Q 040145 221 LDSAEVLDPVKGN-WRTIASMGTNMASYDAAVL---DGKLLVTEGWLWPFFVSPRGQVYDP-STDNWESMAVGLREGWTG 295 (402)
Q Consensus 221 ~~~~~~yd~~t~~-W~~~~~~~~~~~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~yd~-~~~~W~~~~~~~~~~~~~ 295 (402)
..++++|....+. |+....+...-....++-. .++| +.++.+ +..+++.. +.++|......+...+..
T Consensus 31 ~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrI-vtcs~d------rnayVw~~~~~~~WkptlvLlRiNrAA 103 (361)
T KOG1523|consen 31 NHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRI-VTCSHD------RNAYVWTQPSGGTWKPTLVLLRINRAA 103 (361)
T ss_pred CceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCce-eEccCC------CCccccccCCCCeeccceeEEEeccce
Confidence 5689999999888 9988665544333333322 2344 333322 34577776 788999877645554544
Q ss_pred eEEE--ECCEEEEEeccC-CcEEEEEeCCCCcee
Q 040145 296 SSVV--VYEHLFVVSELE-RMKLKVYDPSTDSWE 326 (402)
Q Consensus 296 ~~~~--~~~~l~~~gg~~-~~~~~~yd~~~~~W~ 326 (402)
.++. -+...|.+|+.. ...|..|.-+++=|.
T Consensus 104 t~V~WsP~enkFAVgSgar~isVcy~E~ENdWWV 137 (361)
T KOG1523|consen 104 TCVKWSPKENKFAVGSGARLISVCYYEQENDWWV 137 (361)
T ss_pred eeEeecCcCceEEeccCccEEEEEEEecccceeh
Confidence 4432 255667776654 346666666555443
No 204
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=57.89 E-value=1.3e+02 Score=26.40 Aligned_cols=194 Identities=12% Similarity=0.068 Sum_probs=89.3
Q ss_pred cCCEEEEEe--CccCCCCCCCceEEEEECCC-CceeecCCCccc------ccce--EEEEECCEEEEEcCCCCCCCCCCe
Q 040145 155 REGTLFVCG--GMVSDVDCPLDLVLKYEMQK-NRWTVMNKMITA------RSFF--ASGVIGGMIYVAGGSSADLFELDS 223 (402)
Q Consensus 155 ~~~~i~v~G--G~~~~~~~~~~~~~~~d~~t-~~W~~~~~~~~~------r~~~--~~~~~~~~iyv~GG~~~~~~~~~~ 223 (402)
.++.|+++- +..........-.+...... .+|.....++.. .... .+..-++.+++..-...... ...
T Consensus 57 ~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~~~~~~~~~-~~~ 135 (275)
T PF13088_consen 57 PDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAPYYHESGGS-FSA 135 (275)
T ss_dssp TTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEEEEEESSCE-EEE
T ss_pred CCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEEEeeccccC-cce
Confidence 488888875 22111111122223555553 379886544322 1111 23334778887621111111 233
Q ss_pred eEEEcCC-CCcEEEcCCCCCC-CcceeEEE-E-CCEEEEEcccccCCccCCcEEEEeCC-CCCeeeccc-cccCCCceeE
Q 040145 224 AEVLDPV-KGNWRTIASMGTN-MASYDAAV-L-DGKLLVTEGWLWPFFVSPRGQVYDPS-TDNWESMAV-GLREGWTGSS 297 (402)
Q Consensus 224 ~~~yd~~-t~~W~~~~~~~~~-~~~~~~~~-~-~g~ly~~gG~~~~~~~~~~~~~yd~~-~~~W~~~~~-~~~~~~~~~~ 297 (402)
...|+.. -.+|+.....+.. .......+ . +|.|+++.-.. ... ...+.+-.. -.+|+.... ..+.......
T Consensus 136 ~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~~--~~~~~~S~D~G~TWs~~~~~~~~~~~~~~~ 212 (275)
T PF13088_consen 136 FVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE-GND--DIYISRSTDGGRTWSPPQPTNLPNPNSSIS 212 (275)
T ss_dssp EEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC-SST--EEEEEEESSTTSS-EEEEEEECSSCCEEEE
T ss_pred EEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEcc-CCC--cEEEEEECCCCCcCCCceecccCcccCCce
Confidence 3444444 4469887655422 22222222 2 78898876542 111 223333333 347998542 2344333333
Q ss_pred E-E-ECCEEEEEeccC--CcE--EEEEeCCCCceeecCCCCCCc--cccCCeEEEEeCCEEEE
Q 040145 298 V-V-VYEHLFVVSELE--RMK--LKVYDPSTDSWETIEGPPLPE--QICKPFAVNACDCRVYV 352 (402)
Q Consensus 298 ~-~-~~~~l~~~gg~~--~~~--~~~yd~~~~~W~~~~~~~~p~--~~~~~~~~~~~~~~i~v 352 (402)
+ . -+|+++++.... ... +..-.-...+|.....+.-.. ...+...+..-+|+|+|
T Consensus 213 ~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 213 LVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp EEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred EEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 2 2 267888886631 222 323233367899765221111 11333344455779986
No 205
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=57.71 E-value=2.7e+02 Score=29.89 Aligned_cols=165 Identities=10% Similarity=0.049 Sum_probs=87.1
Q ss_pred CCceEEEEECCCCceeecCCCcccccceEEEEE-----CCE-EEEEcCCCCCC-C----CCCeeEEEcCCCC--cEEEcC
Q 040145 172 PLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-----GGM-IYVAGGSSADL-F----ELDSAEVLDPVKG--NWRTIA 238 (402)
Q Consensus 172 ~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-----~~~-iyv~GG~~~~~-~----~~~~~~~yd~~t~--~W~~~~ 238 (402)
..+.+.++|+.+++-..+-.+...-..++++.+ ++. +..+|+..... . ....++.|+...+ +-+-+.
T Consensus 851 w~s~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh 930 (1205)
T KOG1898|consen 851 WVSSIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLH 930 (1205)
T ss_pred ccceEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeee
Confidence 455688899988875554444433333333322 222 44444432111 1 1234677765432 333333
Q ss_pred CCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeecccccc-CCCceeEEEECCEEEEEeccCCcEEEE
Q 040145 239 SMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLR-EGWTGSSVVVYEHLFVVSELERMKLKV 317 (402)
Q Consensus 239 ~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~-~~~~~~~~~~~~~l~~~gg~~~~~~~~ 317 (402)
....+..-++.+.+.|.+++--| +.+++||+..++-........ +..-........+|++-.-.++-..++
T Consensus 931 ~T~~~~~v~Ai~~f~~~~LagvG--------~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~ 1002 (1205)
T KOG1898|consen 931 KTEIPGPVGAICPFQGRVLAGVG--------RFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVR 1002 (1205)
T ss_pred ccCCCccceEEeccCCEEEEecc--------cEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEE
Confidence 33333333445556776655444 378999998776433322111 111112234566776644444667889
Q ss_pred EeCCCCceeecCCCCCCccccCCeEEEEeC
Q 040145 318 YDPSTDSWETIEGPPLPEQICKPFAVNACD 347 (402)
Q Consensus 318 yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~ 347 (402)
|+++.|+......-+.| |+-.++...+
T Consensus 1003 y~~~~n~l~~fadD~~p---R~Vt~~~~lD 1029 (1205)
T KOG1898|consen 1003 YRREDNQLIVFADDPVP---RHVTALELLD 1029 (1205)
T ss_pred EecCCCeEEEEeCCCcc---ceeeEEEEec
Confidence 99999999888865666 5554444433
No 206
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=55.21 E-value=84 Score=31.37 Aligned_cols=97 Identities=14% Similarity=0.125 Sum_probs=59.5
Q ss_pred CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE-eCCEEEEEecCceeeeEEEEecccccccC-ceee
Q 040145 301 YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA-CDCRVYVVGRNLHVAVGHITRLSTSEKKW-SFSV 378 (402)
Q Consensus 301 ~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~~~~~~-~~~~ 378 (402)
+.+.+.++.. ...+++|++.. .|-....+..|...+.. +.+- -+++||-+|+......-|+..+.+.+... +...
T Consensus 36 kS~~lAvsRt-~g~IEiwN~~~-~w~~~~vi~g~~drsIE-~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~ 112 (691)
T KOG2048|consen 36 KSNQLAVSRT-DGNIEIWNLSN-NWFLEPVIHGPEDRSIE-SLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGA 112 (691)
T ss_pred cCCceeeecc-CCcEEEEccCC-CceeeEEEecCCCCcee-eEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcc
Confidence 4445555544 56899999976 58876655666553443 5554 59999999997766555554444332222 3456
Q ss_pred eEEEEeCCCCCCCccccceeEE
Q 040145 379 QWQVVDAPDNFSDLTPSSSQVL 400 (402)
Q Consensus 379 ~W~~~~~~~~~~~~~~~~~~~~ 400 (402)
.|..-..|....-+.-|...|+
T Consensus 113 IWsiai~p~~~~l~IgcddGvl 134 (691)
T KOG2048|consen 113 IWSIAINPENTILAIGCDDGVL 134 (691)
T ss_pred eeEEEeCCccceEEeecCCceE
Confidence 8988777777443333444443
No 207
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=54.04 E-value=29 Score=20.25 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=16.1
Q ss_pred EEECCEEEEEeccCCcEEEEEeCCC
Q 040145 298 VVVYEHLFVVSELERMKLKVYDPST 322 (402)
Q Consensus 298 ~~~~~~l~~~gg~~~~~~~~yd~~~ 322 (402)
++.++++|+.+. ...++.+|+++
T Consensus 18 ~v~~g~vyv~~~--dg~l~ald~~t 40 (40)
T PF13570_consen 18 AVAGGRVYVGTG--DGNLYALDAAT 40 (40)
T ss_dssp EECTSEEEEE-T--TSEEEEEETT-
T ss_pred EEECCEEEEEcC--CCEEEEEeCCC
Confidence 667888887654 45899999864
No 208
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=53.66 E-value=14 Score=34.74 Aligned_cols=40 Identities=20% Similarity=0.363 Sum_probs=36.1
Q ss_pred CCCCCCcHHHHHHhhccCccchhhhhhhccHhHHHhhcCc
Q 040145 51 PFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNK 90 (402)
Q Consensus 51 ~~~~~Lp~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~s~ 90 (402)
.....||.|++..+++.|...++.+.+-+|+-|+.+....
T Consensus 70 ~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 70 SISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred cccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 3456799999999999999999999999999999988766
No 209
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=53.02 E-value=1.6e+02 Score=29.89 Aligned_cols=61 Identities=8% Similarity=0.049 Sum_probs=36.3
Q ss_pred CCEEEEEcccccCCccCCcEEEEeCCCCCe-eeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCC
Q 040145 253 DGKLLVTEGWLWPFFVSPRGQVYDPSTDNW-ESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPS 321 (402)
Q Consensus 253 ~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~ 321 (402)
+|+..+.|+.. ..+..||+.+++= ..+.. ....-.......+|.++++||. .+.+..||..
T Consensus 588 ~Gr~LaSg~ed------~~I~iWDl~~~~~v~~l~~-Ht~ti~SlsFS~dg~vLasgg~-DnsV~lWD~~ 649 (707)
T KOG0263|consen 588 CGRYLASGDED------GLIKIWDLANGSLVKQLKG-HTGTIYSLSFSRDGNVLASGGA-DNSVRLWDLT 649 (707)
T ss_pred CCceEeecccC------CcEEEEEcCCCcchhhhhc-ccCceeEEEEecCCCEEEecCC-CCeEEEEEch
Confidence 67766666653 3688899887542 22211 1111111124568999999887 5677777775
No 210
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=51.11 E-value=2.4e+02 Score=28.34 Aligned_cols=67 Identities=18% Similarity=0.394 Sum_probs=42.9
Q ss_pred ccCCEEEEEeCccCCCCCCCceEEEEECCCCceeec--------CCCc-cccc-ceEEEEE-CCEEEEEcCCCCCCCCCC
Q 040145 154 PREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVM--------NKMI-TARS-FFASGVI-GGMIYVAGGSSADLFELD 222 (402)
Q Consensus 154 ~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~--------~~~~-~~r~-~~~~~~~-~~~iyv~GG~~~~~~~~~ 222 (402)
+.++.+++.||.+. .+++||..++.-+.+ ..++ .++. -++.+.- .+.+++.||. .+
T Consensus 127 ak~~~lvaSgGLD~-------~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt------ek 193 (735)
T KOG0308|consen 127 AKNNELVASGGLDR-------KIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT------EK 193 (735)
T ss_pred ccCceeEEecCCCc-------cEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc------cc
Confidence 55889999999843 688888877643222 1233 2222 2233332 3568888887 66
Q ss_pred eeEEEcCCCCc
Q 040145 223 SAEVLDPVKGN 233 (402)
Q Consensus 223 ~~~~yd~~t~~ 233 (402)
.+.+||+.++.
T Consensus 194 ~lr~wDprt~~ 204 (735)
T KOG0308|consen 194 DLRLWDPRTCK 204 (735)
T ss_pred ceEEecccccc
Confidence 78899999875
No 211
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=50.39 E-value=2.1e+02 Score=26.49 Aligned_cols=158 Identities=11% Similarity=0.053 Sum_probs=79.5
Q ss_pred eEEEEECCCCceeecCCCcccccceEEEE-----E-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCccee
Q 040145 175 LVLKYEMQKNRWTVMNKMITARSFFASGV-----I-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYD 248 (402)
Q Consensus 175 ~~~~~d~~t~~W~~~~~~~~~r~~~~~~~-----~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~ 248 (402)
.+-+||...|+..+ ..++|-..+ + -..+++.||. -..+-++|..|..= +.-|...+...+
T Consensus 216 ~VKCwDLe~nkvIR------~YhGHlS~V~~L~lhPTldvl~t~gr------Dst~RvWDiRtr~~--V~~l~GH~~~V~ 281 (460)
T KOG0285|consen 216 QVKCWDLEYNKVIR------HYHGHLSGVYCLDLHPTLDVLVTGGR------DSTIRVWDIRTRAS--VHVLSGHTNPVA 281 (460)
T ss_pred eeEEEechhhhhHH------HhccccceeEEEeccccceeEEecCC------cceEEEeeecccce--EEEecCCCCcce
Confidence 68899998876322 122222222 1 1356777776 45567788877642 222333333333
Q ss_pred EEEE---CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCce
Q 040145 249 AAVL---DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSW 325 (402)
Q Consensus 249 ~~~~---~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W 325 (402)
.+.+ |..||- |..+ ..+-.+|+..++=-. ..........+.+++-+.+.|...+.+.+..++.-....
T Consensus 282 ~V~~~~~dpqvit-~S~D------~tvrlWDl~agkt~~--tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f 352 (460)
T KOG0285|consen 282 SVMCQPTDPQVIT-GSHD------STVRLWDLRAGKTMI--TLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEF 352 (460)
T ss_pred eEEeecCCCceEE-ecCC------ceEEEeeeccCceeE--eeecccceeeEEecCCchhhhhccCCccceeccCCccch
Confidence 3433 556654 3221 255666665543111 111122222234566667777665556666665544432
Q ss_pred eecCCCCCCccccCCeEEEEeCCEEEEEecCcee
Q 040145 326 ETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHV 359 (402)
Q Consensus 326 ~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~ 359 (402)
+. .+........++.+..+-+|+.||.+..
T Consensus 353 --~~--nlsgh~~iintl~~nsD~v~~~G~dng~ 382 (460)
T KOG0285|consen 353 --LQ--NLSGHNAIINTLSVNSDGVLVSGGDNGS 382 (460)
T ss_pred --hh--ccccccceeeeeeeccCceEEEcCCceE
Confidence 22 1222112333666778889999986443
No 212
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=50.16 E-value=2.7e+02 Score=27.63 Aligned_cols=56 Identities=20% Similarity=0.383 Sum_probs=36.6
Q ss_pred CeeEEEcCCCCcEEEcCCCCC-------CCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccc
Q 040145 222 DSAEVLDPVKGNWRTIASMGT-------NMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV 287 (402)
Q Consensus 222 ~~~~~yd~~t~~W~~~~~~~~-------~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~ 287 (402)
..+..-.|.-..|+.+++.+. +..-.-++..||++++--| +-+.++.-+.|..+..
T Consensus 208 tGvs~~~P~GraW~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~G----------VsRqNp~GdsWkdI~t 270 (705)
T KOG3669|consen 208 TGVSVDRPCGRAWKVICPYTDLSQISAGPTGVVWAVTENGAVFYREG----------VSRQNPEGDSWKDIVT 270 (705)
T ss_pred ccccCCCCCCceeeecCCCCccceEeecCcceEEEEeeCCcEEEEec----------ccccCCCCchhhhccC
Confidence 344555677888998866551 1112234456888887655 4567888999998875
No 213
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=50.12 E-value=2.1e+02 Score=26.46 Aligned_cols=60 Identities=12% Similarity=0.061 Sum_probs=31.1
Q ss_pred EECCEEEEEeccCCcEEEEEeCCCC-ceeecCCCCCCccccC---CeEEEEe-CCEEEEEecCcee
Q 040145 299 VVYEHLFVVSELERMKLKVYDPSTD-SWETIEGPPLPEQICK---PFAVNAC-DCRVYVVGRNLHV 359 (402)
Q Consensus 299 ~~~~~l~~~gg~~~~~~~~yd~~~~-~W~~~~~~~~p~~~~~---~~~~~~~-~~~i~v~GG~~~~ 359 (402)
+..+.+|+.||. ...++.||-++. ..........|...-. -+++|.. .+.=+|.|+.++.
T Consensus 368 ~nsD~v~~~G~d-ng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKt 432 (460)
T KOG0285|consen 368 VNSDGVLVSGGD-NGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKT 432 (460)
T ss_pred eccCceEEEcCC-ceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcc
Confidence 344556666664 667888888765 3555543334432222 2344433 3344455554444
No 214
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=49.47 E-value=2.6e+02 Score=27.31 Aligned_cols=110 Identities=16% Similarity=0.185 Sum_probs=60.6
Q ss_pred EEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEE
Q 040145 150 CVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVL 227 (402)
Q Consensus 150 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~y 227 (402)
++++..++..+++||.++ .+.+|...-..-.+...+...|...+.+.+ ++..+++|-. ...+..|
T Consensus 448 ~vAv~~~~~~vaVGG~Dg-------kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da------~rkvv~y 514 (603)
T KOG0318|consen 448 AVAVSPDGSEVAVGGQDG-------KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA------SRKVVLY 514 (603)
T ss_pred eEEEcCCCCEEEEecccc-------eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEecc------CCcEEEE
Confidence 344445677777777632 477777665443333333344555555554 3454555443 5567888
Q ss_pred cCCCCcEEEcCC--CCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCC
Q 040145 228 DPVKGNWRTIAS--MGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPST 279 (402)
Q Consensus 228 d~~t~~W~~~~~--~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~ 279 (402)
|..++.- .... +..+|-.+.+-.-+++++..|+.+ ..+.+|+.+.
T Consensus 515 d~~s~~~-~~~~w~FHtakI~~~aWsP~n~~vATGSlD------t~Viiysv~k 561 (603)
T KOG0318|consen 515 DVASREV-KTNRWAFHTAKINCVAWSPNNKLVATGSLD------TNVIIYSVKK 561 (603)
T ss_pred EcccCce-ecceeeeeeeeEEEEEeCCCceEEEecccc------ceEEEEEccC
Confidence 8876542 1111 122222222233378888888864 4788888765
No 215
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=49.32 E-value=2.2e+02 Score=26.47 Aligned_cols=60 Identities=10% Similarity=0.124 Sum_probs=31.5
Q ss_pred CEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEe
Q 040145 302 EHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITR 366 (402)
Q Consensus 302 ~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~ 366 (402)
|.=++.|++ ...|.+|......=.++- -...+...+++-..-|.=||+.|.+.. ...+|.
T Consensus 284 G~Efvsgsy-DksIRIf~~~~~~SRdiY---htkRMq~V~~Vk~S~Dskyi~SGSdd~-nvRlWk 343 (433)
T KOG0268|consen 284 GQEFVSGSY-DKSIRIFPVNHGHSRDIY---HTKRMQHVFCVKYSMDSKYIISGSDDG-NVRLWK 343 (433)
T ss_pred cchhccccc-cceEEEeecCCCcchhhh---hHhhhheeeEEEEeccccEEEecCCCc-ceeeee
Confidence 566677776 456777777655433332 111111223444456667888886543 233444
No 216
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=48.56 E-value=1.6e+02 Score=24.58 Aligned_cols=65 Identities=18% Similarity=0.046 Sum_probs=34.7
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCC
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKG 232 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 232 (402)
+..+.++-|.. -..+.+||.....-..+ +........=.-+|+.++++|.++. ...+.+||..+.
T Consensus 71 g~~favi~g~~------~~~v~lyd~~~~~i~~~---~~~~~n~i~wsP~G~~l~~~g~~n~---~G~l~~wd~~~~ 135 (194)
T PF08662_consen 71 GNEFAVIYGSM------PAKVTLYDVKGKKIFSF---GTQPRNTISWSPDGRFLVLAGFGNL---NGDLEFWDVRKK 135 (194)
T ss_pred CCEEEEEEccC------CcccEEEcCcccEeEee---cCCCceEEEECCCCCEEEEEEccCC---CcEEEEEECCCC
Confidence 45666665531 12788999863322222 2211111111236777888876432 346889999843
No 217
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=48.24 E-value=2.1e+02 Score=25.84 Aligned_cols=43 Identities=12% Similarity=0.120 Sum_probs=26.8
Q ss_pred CcEEEEeCCCC--CeeeccccccCCCceeEEEECCEEEEEeccCC
Q 040145 270 PRGQVYDPSTD--NWESMAVGLREGWTGSSVVVYEHLFVVSELER 312 (402)
Q Consensus 270 ~~~~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~ 312 (402)
+.+.+|+++.. +...+..++.....+.++..++..|.+|+.++
T Consensus 176 r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEG 220 (347)
T KOG0647|consen 176 RHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEG 220 (347)
T ss_pred CcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecc
Confidence 47889998765 34445443333333344666778888988754
No 218
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=47.81 E-value=2.6e+02 Score=26.84 Aligned_cols=108 Identities=8% Similarity=-0.073 Sum_probs=60.1
Q ss_pred CCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEE
Q 040145 172 PLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAV 251 (402)
Q Consensus 172 ~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~ 251 (402)
...++|++|..+++-+++......-...+...-+.+|+......+ ...+++||+...+=+.+..-..... .-...
T Consensus 260 g~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G----~p~I~~~~~~g~~~~riT~~~~~~~-~p~~S 334 (425)
T COG0823 260 GSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGG----RPQIYLYDLEGSQVTRLTFSGGGNS-NPVWS 334 (425)
T ss_pred CCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCC----CcceEEECCCCCceeEeeccCCCCc-CccCC
Confidence 355899999998874444333322222333334556666643333 4589999999877555422111111 22233
Q ss_pred ECCEEEEEcccccCCccCCcEEEEeCCCCC-eeeccc
Q 040145 252 LDGKLLVTEGWLWPFFVSPRGQVYDPSTDN-WESMAV 287 (402)
Q Consensus 252 ~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~-W~~~~~ 287 (402)
-+|+.+++-+..+ +. ..+..+|+.++. |+.+..
T Consensus 335 pdG~~i~~~~~~~-g~--~~i~~~~~~~~~~~~~lt~ 368 (425)
T COG0823 335 PDGDKIVFESSSG-GQ--WDIDKNDLASGGKIRILTS 368 (425)
T ss_pred CCCCEEEEEeccC-Cc--eeeEEeccCCCCcEEEccc
Confidence 3565555544321 11 368899998776 887764
No 219
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=47.47 E-value=2.2e+02 Score=28.95 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=53.2
Q ss_pred cCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCc
Q 040145 155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGN 233 (402)
Q Consensus 155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 233 (402)
+.+.=|+.+|. .-..+-.+|..++.-.++=.- ..+.-.++++. .|+-.+.|+. ...+.+||..++.
T Consensus 544 HPNs~Y~aTGS------sD~tVRlWDv~~G~~VRiF~G-H~~~V~al~~Sp~Gr~LaSg~e------d~~I~iWDl~~~~ 610 (707)
T KOG0263|consen 544 HPNSNYVATGS------SDRTVRLWDVSTGNSVRIFTG-HKGPVTALAFSPCGRYLASGDE------DGLIKIWDLANGS 610 (707)
T ss_pred CCcccccccCC------CCceEEEEEcCCCcEEEEecC-CCCceEEEEEcCCCceEeeccc------CCcEEEEEcCCCc
Confidence 34555555553 123566777777754443211 11122233333 4454444544 3457888888754
Q ss_pred EEEcCCCCCCCccee--EEEECCEEEEEcccccCCccCCcEEEEeCCC
Q 040145 234 WRTIASMGTNMASYD--AAVLDGKLLVTEGWLWPFFVSPRGQVYDPST 279 (402)
Q Consensus 234 W~~~~~~~~~~~~~~--~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~ 279 (402)
.+..+........ ....+|.+++.||.+ +++..+|...
T Consensus 611 --~v~~l~~Ht~ti~SlsFS~dg~vLasgg~D------nsV~lWD~~~ 650 (707)
T KOG0263|consen 611 --LVKQLKGHTGTIYSLSFSRDGNVLASGGAD------NSVRLWDLTK 650 (707)
T ss_pred --chhhhhcccCceeEEEEecCCCEEEecCCC------CeEEEEEchh
Confidence 2222222222111 234489999999864 4677777643
No 220
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=46.89 E-value=3.4e+02 Score=27.91 Aligned_cols=164 Identities=10% Similarity=0.092 Sum_probs=79.9
Q ss_pred eEEEEECCCCceeecCCCccccc-ceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeE--EE
Q 040145 175 LVLKYEMQKNRWTVMNKMITARS-FFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDA--AV 251 (402)
Q Consensus 175 ~~~~~d~~t~~W~~~~~~~~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~--~~ 251 (402)
.+.+||..|+.-...=.....+. .++....++.+.++=|+. -..+.+||..++ . .+....+|.. ..
T Consensus 44 ~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYa-----DGsVqif~~~s~---~---~~~tfngHK~AVt~ 112 (888)
T KOG0306|consen 44 QVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYA-----DGSVQIFSLESE---E---ILITFNGHKAAVTT 112 (888)
T ss_pred cEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEec-----CceEEeeccCCC---c---eeeeecccccceEE
Confidence 78899999884222111122232 233344456554444442 234678887765 1 1111122222 21
Q ss_pred --E--CCEEEEEcccccCCccCCcEEEEeCCCCC--eeeccccccCCCceeEEEEC-CEEEEEeccCCcEEEEEeCCCCc
Q 040145 252 --L--DGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WESMAVGLREGWTGSSVVVY-EHLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 252 --~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~-~~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
+ .|..++.||.+ ..+.+||+.... .+--. ....... ....+ +.+.+.-+. ...+..+|+++..
T Consensus 113 l~fd~~G~rlaSGskD------t~IIvwDlV~E~Gl~rL~G--Hkd~iT~-~~F~~~~~~lvS~sK-Ds~iK~WdL~tqh 182 (888)
T KOG0306|consen 113 LKFDKIGTRLASGSKD------TDIIVWDLVGEEGLFRLRG--HKDSITQ-ALFLNGDSFLVSVSK-DSMIKFWDLETQH 182 (888)
T ss_pred EEEcccCceEeecCCC------ccEEEEEeccceeeEEeec--chHHHhH-HhccCCCeEEEEecc-CceEEEEecccce
Confidence 2 35556667654 367888875432 11111 0000000 11233 555555444 4578889999887
Q ss_pred eeecCCCCCCccccCC-eEEEEeCCEEEEEecCceeeeEEEEec
Q 040145 325 WETIEGPPLPEQICKP-FAVNACDCRVYVVGRNLHVAVGHITRL 367 (402)
Q Consensus 325 W~~~~~~~~p~~~~~~-~~~~~~~~~i~v~GG~~~~~~~~v~~~ 367 (402)
-.+.. +.. +.. .++++.+ ++.|.||.+.. ..||.+
T Consensus 183 Cf~Th---vd~--r~Eiw~l~~~~-~~lvt~~~dse--~~v~~L 218 (888)
T KOG0306|consen 183 CFETH---VDH--RGEIWALVLDE-KLLVTAGTDSE--LKVWEL 218 (888)
T ss_pred eeeEE---ecc--cceEEEEEEec-ceEEEEecCCc--eEEEEe
Confidence 65543 221 222 2555555 66677665544 446666
No 221
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=46.35 E-value=2.7e+02 Score=26.60 Aligned_cols=143 Identities=10% Similarity=0.099 Sum_probs=74.0
Q ss_pred EEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccc-eEEEEEC--CEEEEEcCCCCCCCCCCeeEE
Q 040145 150 CVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSF-FASGVIG--GMIYVAGGSSADLFELDSAEV 226 (402)
Q Consensus 150 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~-~~~~~~~--~~iyv~GG~~~~~~~~~~~~~ 226 (402)
++++..+++.+++||.+ ..+.+||+.|..-... +...|.. .+.+... +.+|..+- ..++-+
T Consensus 207 ~~avS~Dgkylatgg~d-------~~v~Iw~~~t~ehv~~--~~ghr~~V~~L~fr~gt~~lys~s~-------Drsvkv 270 (479)
T KOG0299|consen 207 TLAVSSDGKYLATGGRD-------RHVQIWDCDTLEHVKV--FKGHRGAVSSLAFRKGTSELYSASA-------DRSVKV 270 (479)
T ss_pred EEEEcCCCcEEEecCCC-------ceEEEecCcccchhhc--ccccccceeeeeeecCccceeeeec-------CCceEE
Confidence 34455689999999973 2678999988653332 2322322 2233332 35665543 234555
Q ss_pred EcCCCCcEEEcCCCCCCCcceeEEE------ECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE
Q 040145 227 LDPVKGNWRTIASMGTNMASYDAAV------LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV 300 (402)
Q Consensus 227 yd~~t~~W~~~~~~~~~~~~~~~~~------~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 300 (402)
|+....... ...++|...+ --++...+||.+ .++..|++...+=.... .......+++.+
T Consensus 271 w~~~~~s~v------etlyGHqd~v~~IdaL~reR~vtVGgrD------rT~rlwKi~eesqlifr--g~~~sidcv~~I 336 (479)
T KOG0299|consen 271 WSIDQLSYV------ETLYGHQDGVLGIDALSRERCVTVGGRD------RTVRLWKIPEESQLIFR--GGEGSIDCVAFI 336 (479)
T ss_pred EehhHhHHH------HHHhCCccceeeechhcccceEEecccc------ceeEEEeccccceeeee--CCCCCeeeEEEe
Confidence 555443321 1123333222 246778888864 35566665332211111 112233344677
Q ss_pred CCEEEEEeccCCcEEEEEeCCCC
Q 040145 301 YEHLFVVSELERMKLKVYDPSTD 323 (402)
Q Consensus 301 ~~~l~~~gg~~~~~~~~yd~~~~ 323 (402)
++.=|+.|+. ...|..++..++
T Consensus 337 n~~HfvsGSd-nG~IaLWs~~KK 358 (479)
T KOG0299|consen 337 NDEHFVSGSD-NGSIALWSLLKK 358 (479)
T ss_pred cccceeeccC-CceEEEeeeccc
Confidence 8888888765 445666665443
No 222
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=45.03 E-value=1.8e+02 Score=24.21 Aligned_cols=67 Identities=10% Similarity=0.023 Sum_probs=38.6
Q ss_pred CCeeEEEcCCCCcEEEcCCCCCC-CcceeEEE-E-CCE-EEEEcccccCCccCCcEEEEeCCCCCeeeccc
Q 040145 221 LDSAEVLDPVKGNWRTIASMGTN-MASYDAAV-L-DGK-LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV 287 (402)
Q Consensus 221 ~~~~~~yd~~t~~W~~~~~~~~~-~~~~~~~~-~-~g~-ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~ 287 (402)
...++++|..++.|..+..-+.. ...+--+. + +.. ++++|...+.-...-.++.|++.++.=+++-.
T Consensus 87 iGkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~ 157 (200)
T PF15525_consen 87 IGKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYE 157 (200)
T ss_pred ceeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeee
Confidence 67899999998887655221111 22222222 2 334 45555433322223378999999998877765
No 223
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=44.90 E-value=3.1e+02 Score=26.76 Aligned_cols=66 Identities=20% Similarity=0.184 Sum_probs=38.6
Q ss_pred ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCC-cceeEE-EECCEEEEEcccccCCccCCcEEEEeCCCCC
Q 040145 204 IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNM-ASYDAA-VLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN 281 (402)
Q Consensus 204 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~-~~~~~~-~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~ 281 (402)
-+++-+++||. .+++-++|..+-+=+.-..++... ..++.+ ..+.++.+..-.+ -.|.+||+.+.+
T Consensus 475 pdgrtLivGGe------astlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsd------GnI~vwDLhnq~ 542 (705)
T KOG0639|consen 475 PDGRTLIVGGE------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSD------GNIAVWDLHNQT 542 (705)
T ss_pred CCCceEEeccc------cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccC------CcEEEEEcccce
Confidence 37888999997 677888888876544444444422 222222 3355554433221 257888887765
No 224
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=44.71 E-value=2.3e+02 Score=25.29 Aligned_cols=156 Identities=10% Similarity=-0.017 Sum_probs=0.0
Q ss_pred EEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCC
Q 040145 200 ASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPST 279 (402)
Q Consensus 200 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~ 279 (402)
.+...++...+.++. -..+..+|.++++=+..=.-+...-...++.-+++-.+.|..+ +.+..||...
T Consensus 69 v~~s~dg~~alS~sw------D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrD------kTiklwnt~g 136 (315)
T KOG0279|consen 69 VVLSSDGNFALSASW------DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRD------KTIKLWNTLG 136 (315)
T ss_pred eEEccCCceEEeccc------cceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCc------ceeeeeeecc
Q ss_pred CCeeeccccccCCCceeEEEECC--EEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCc
Q 040145 280 DNWESMAVGLREGWTGSSVVVYE--HLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNL 357 (402)
Q Consensus 280 ~~W~~~~~~~~~~~~~~~~~~~~--~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~ 357 (402)
+.=-++.......+.......-+ ..+++-+.....+.++|..+- ++..+-...........+..||.+..-||.+
T Consensus 137 ~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~---~l~~~~~gh~~~v~t~~vSpDGslcasGgkd 213 (315)
T KOG0279|consen 137 VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC---QLRTTFIGHSGYVNTVTVSPDGSLCASGGKD 213 (315)
T ss_pred cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc---chhhccccccccEEEEEECCCCCEEecCCCC
Q ss_pred eeeeEEEEecccccc
Q 040145 358 HVAVGHITRLSTSEK 372 (402)
Q Consensus 358 ~~~~~~v~~~~~~~~ 372 (402)
.. ...|+++..++
T Consensus 214 g~--~~LwdL~~~k~ 226 (315)
T KOG0279|consen 214 GE--AMLWDLNEGKN 226 (315)
T ss_pred ce--EEEEEccCCce
No 225
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=44.47 E-value=68 Score=31.91 Aligned_cols=58 Identities=17% Similarity=0.184 Sum_probs=40.5
Q ss_pred cEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEeccccc
Q 040145 313 MKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSE 371 (402)
Q Consensus 313 ~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~ 371 (402)
..+.+|+|....= .+..-+-|...|..-..-+++|+++|+-|.++.....+..||-+.
T Consensus 742 g~~rVy~Prs~e~-pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 742 GTLRVYEPRSREQ-PVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred ceEEEeCCCCCCC-ccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 4788999976542 222224454546555666899999999999988888888887543
No 226
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=44.43 E-value=3.6e+02 Score=27.42 Aligned_cols=50 Identities=12% Similarity=0.313 Sum_probs=29.0
Q ss_pred cCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccc-ccceEEE-EECCEEEEEcCCC
Q 040145 155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITA-RSFFASG-VIGGMIYVAGGSS 215 (402)
Q Consensus 155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~-r~~~~~~-~~~~~iyv~GG~~ 215 (402)
.+..+.+..|. .+++||+..++- +.++... ..-.+++ ..+|+.|..||.+
T Consensus 23 DGsqL~lAAg~---------rlliyD~ndG~l--lqtLKgHKDtVycVAys~dGkrFASG~aD 74 (1081)
T KOG1538|consen 23 DGTQLILAAGS---------RLLVYDTSDGTL--LQPLKGHKDTVYCVAYAKDGKRFASGSAD 74 (1081)
T ss_pred CCceEEEecCC---------EEEEEeCCCccc--ccccccccceEEEEEEccCCceeccCCCc
Confidence 34566666553 799999988752 2233222 1222222 3578888888764
No 227
>PF13013 F-box-like_2: F-box-like domain
Probab=44.16 E-value=25 Score=26.40 Aligned_cols=29 Identities=14% Similarity=0.053 Sum_probs=23.9
Q ss_pred CCCCcHHHHHHhhccCccchhhhhhhccH
Q 040145 53 IPGLPDDVALNCLLRLPVESHAACRAVCK 81 (402)
Q Consensus 53 ~~~Lp~dl~~~il~rlp~~~l~~~~~v~k 81 (402)
+..||+||+..|+.......+..+...|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 67799999999999888877766666665
No 228
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=43.80 E-value=3.8e+02 Score=27.59 Aligned_cols=166 Identities=18% Similarity=0.091 Sum_probs=76.9
Q ss_pred eEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECC
Q 040145 175 LVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDG 254 (402)
Q Consensus 175 ~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g 254 (402)
++-+||..|.+-.+ .++.. +.+++..+.+.-|++-|.. ...+.+||..+..--+.-.-..+--..-+...++
T Consensus 395 SikiWn~~t~kciR--Ti~~~-y~l~~~Fvpgd~~Iv~G~k-----~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~ 466 (888)
T KOG0306|consen 395 SIKIWNRDTLKCIR--TITCG-YILASKFVPGDRYIVLGTK-----NGELQVFDLASASLVETIRAHDGAIWSISLSPDN 466 (888)
T ss_pred cEEEEEccCcceeE--Eeccc-cEEEEEecCCCceEEEecc-----CCceEEEEeehhhhhhhhhccccceeeeeecCCC
Confidence 68889988765322 22222 4556666655445444432 3457888887543211100001100111222366
Q ss_pred EEEEEcccccCCccCCcEEEEeCC--C---C---Ceeeccc----cccCCCceeEEEECCEEEEEeccCCcEEEEEeCCC
Q 040145 255 KLLVTEGWLWPFFVSPRGQVYDPS--T---D---NWESMAV----GLREGWTGSSVVVYEHLFVVSELERMKLKVYDPST 322 (402)
Q Consensus 255 ~ly~~gG~~~~~~~~~~~~~yd~~--~---~---~W~~~~~----~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~ 322 (402)
+=++.||.+ +.+-.||.. . + +.-.+.. .++..-.+..+.-+|+++++|=. .+.+.+|-.++
T Consensus 467 ~g~vT~saD------ktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLL-dnTVkVyflDt 539 (888)
T KOG0306|consen 467 KGFVTGSAD------KTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLL-DNTVKVYFLDT 539 (888)
T ss_pred CceEEecCC------cEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEec-cCeEEEEEecc
Confidence 667777643 233333321 1 1 1111110 11111111123346888887655 56788887777
Q ss_pred Cceee-cCCCCCCccccCCeEEEEeCCEEEEEecCcee
Q 040145 323 DSWET-IEGPPLPEQICKPFAVNACDCRVYVVGRNLHV 359 (402)
Q Consensus 323 ~~W~~-~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~ 359 (402)
-+... +-+=.+|.. +-=..++.++.+.|+.++.
T Consensus 540 lKFflsLYGHkLPV~----smDIS~DSklivTgSADKn 573 (888)
T KOG0306|consen 540 LKFFLSLYGHKLPVL----SMDISPDSKLIVTGSADKN 573 (888)
T ss_pred eeeeeeeccccccee----EEeccCCcCeEEeccCCCc
Confidence 65432 111123410 1112467888888876544
No 229
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=43.62 E-value=3.2e+02 Score=26.61 Aligned_cols=86 Identities=13% Similarity=0.098 Sum_probs=44.9
Q ss_pred cEEEEeCCCC----CeeeccccccCCCceeE-EEECCEEEEEeccCCcEEEEEeCCCCceee-cCCCCCCccccCCeEEE
Q 040145 271 RGQVYDPSTD----NWESMAVGLREGWTGSS-VVVYEHLFVVSELERMKLKVYDPSTDSWET-IEGPPLPEQICKPFAVN 344 (402)
Q Consensus 271 ~~~~yd~~~~----~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~-~~~~~~p~~~~~~~~~~ 344 (402)
.+..||.... .|.+... .+..+.+ +-.+..|++-=|. ...|..||.....-+. +.. .-| ....+.
T Consensus 188 ~VtlwDv~g~sp~~~~~~~Hs---AP~~gicfspsne~l~vsVG~-Dkki~~yD~~s~~s~~~l~y-~~P----lstvaf 258 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEAHS---APCRGICFSPSNEALLVSVGY-DKKINIYDIRSQASTDRLTY-SHP----LSTVAF 258 (673)
T ss_pred eEEEEeccCCCcccchhhhcc---CCcCcceecCCccceEEEecc-cceEEEeecccccccceeee-cCC----cceeee
Confidence 4566776543 3554443 2222233 3457777777777 4579999998653322 110 111 111223
Q ss_pred EeCCEEEEEecCceeeeEEEEeccc
Q 040145 345 ACDCRVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 345 ~~~~~i~v~GG~~~~~~~~v~~~~~ 369 (402)
.-+|.++++|-.. +.++.||.
T Consensus 259 ~~~G~~L~aG~s~----G~~i~YD~ 279 (673)
T KOG4378|consen 259 SECGTYLCAGNSK----GELIAYDM 279 (673)
T ss_pred cCCceEEEeecCC----ceEEEEec
Confidence 3466777777643 33666764
No 230
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=40.82 E-value=3.2e+02 Score=25.87 Aligned_cols=97 Identities=18% Similarity=0.097 Sum_probs=49.9
Q ss_pred ECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCceeecCCC
Q 040145 252 LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGP 331 (402)
Q Consensus 252 ~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~ 331 (402)
.+|.+.+.||.+. ..-++|+.++.=..+-......-+.....-||..+..|+. .+.+.++|+.... .+-
T Consensus 313 ~DGSL~~tGGlD~------~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~-Dnt~kVWDLR~r~--~ly-- 381 (459)
T KOG0272|consen 313 PDGSLAATGGLDS------LGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS-DNTCKVWDLRMRS--ELY-- 381 (459)
T ss_pred CCCceeeccCccc------hhheeecccCcEEEEecccccceeeEeECCCceEEeecCC-CCcEEEeeecccc--cce--
Confidence 3899999999752 3346676665433221111111111112237777766665 5678888886432 122
Q ss_pred CCCccccCCeEEEE--eCCEEEEEecCcee
Q 040145 332 PLPEQICKPFAVNA--CDCRVYVVGRNLHV 359 (402)
Q Consensus 332 ~~p~~~~~~~~~~~--~~~~i~v~GG~~~~ 359 (402)
.+|....-...+.. ..|+.++..++++.
T Consensus 382 ~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t 411 (459)
T KOG0272|consen 382 TIPAHSNLVSQVKYSPQEGYFLVTASYDNT 411 (459)
T ss_pred ecccccchhhheEecccCCeEEEEcccCcc
Confidence 23322111122222 36777777776655
No 231
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=40.35 E-value=98 Score=24.21 Aligned_cols=64 Identities=17% Similarity=0.298 Sum_probs=37.9
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCc---eeecCCCcccccceEEEE---ECCEEEEEcCCCCCCCCCCeeEEEcC
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNR---WTVMNKMITARSFFASGV---IGGMIYVAGGSSADLFELDSAEVLDP 229 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~---W~~~~~~~~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~yd~ 229 (402)
+..++++|- .+.+..||...|+ ++++++ .-....... ....+.++|| ..++.-||.
T Consensus 63 ~~D~LliGt--------~t~llaYDV~~N~d~Fyke~~D---Gvn~i~~g~~~~~~~~l~ivGG-------ncsi~Gfd~ 124 (136)
T PF14781_consen 63 GRDCLLIGT--------QTSLLAYDVENNSDLFYKEVPD---GVNAIVIGKLGDIPSPLVIVGG-------NCSIQGFDY 124 (136)
T ss_pred CcCEEEEec--------cceEEEEEcccCchhhhhhCcc---ceeEEEEEecCCCCCcEEEECc-------eEEEEEeCC
Confidence 345677764 3479999999886 455443 221122222 2457888888 456677776
Q ss_pred CCCc--EEEc
Q 040145 230 VKGN--WRTI 237 (402)
Q Consensus 230 ~t~~--W~~~ 237 (402)
.-+. |+..
T Consensus 125 ~G~e~fWtVt 134 (136)
T PF14781_consen 125 EGNEIFWTVT 134 (136)
T ss_pred CCcEEEEEec
Confidence 6443 6543
No 232
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=40.32 E-value=3.7e+02 Score=26.35 Aligned_cols=185 Identities=11% Similarity=0.103 Sum_probs=83.5
Q ss_pred EEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcc-cccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEE
Q 040145 150 CVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMIT-ARSFFASGVI-GGMIYVAGGSSADLFELDSAEVL 227 (402)
Q Consensus 150 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~-~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~y 227 (402)
+.++.-++.++..|..+ ..+..+|.....-.. ..+.. ..--++.... ++..+..||. -+.+.+|
T Consensus 263 vg~laW~~~~lssGsr~-------~~I~~~dvR~~~~~~-~~~~~H~qeVCgLkws~d~~~lASGgn------DN~~~Iw 328 (484)
T KOG0305|consen 263 VGSLAWNSSVLSSGSRD-------GKILNHDVRISQHVV-STLQGHRQEVCGLKWSPDGNQLASGGN------DNVVFIW 328 (484)
T ss_pred eEEEeccCceEEEecCC-------CcEEEEEEecchhhh-hhhhcccceeeeeEECCCCCeeccCCC------ccceEec
Confidence 34444477788887763 256666665432100 01111 1111222222 3455555665 4567888
Q ss_pred cCCCCcEEE-cCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEE---ECCE
Q 040145 228 DPVKGNWRT-IASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVV---VYEH 303 (402)
Q Consensus 228 d~~t~~W~~-~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~---~~~~ 303 (402)
|..+..+.. +.....+....+-+-....|...||...+ ..+..+|..+++=... ...+..-.... ..+.
T Consensus 329 d~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D----~~i~fwn~~~g~~i~~---vdtgsQVcsL~Wsk~~kE 401 (484)
T KOG0305|consen 329 DGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSAD----RCIKFWNTNTGARIDS---VDTGSQVCSLIWSKKYKE 401 (484)
T ss_pred cCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcc----cEEEEEEcCCCcEecc---cccCCceeeEEEcCCCCE
Confidence 883322110 00111111111112235667788775422 3566677765442111 11111101111 1456
Q ss_pred EEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCce
Q 040145 304 LFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLH 358 (402)
Q Consensus 304 l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~ 358 (402)
|...-|+..+.+.+|+..+. +.+.. -.....|..+-+...++.-++.|+.+.
T Consensus 402 i~sthG~s~n~i~lw~~ps~--~~~~~-l~gH~~RVl~la~SPdg~~i~t~a~DE 453 (484)
T KOG0305|consen 402 LLSTHGYSENQITLWKYPSM--KLVAE-LLGHTSRVLYLALSPDGETIVTGAADE 453 (484)
T ss_pred EEEecCCCCCcEEEEecccc--ceeee-ecCCcceeEEEEECCCCCEEEEecccC
Confidence 77777877777777776552 22221 133333544455556666555555443
No 233
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=39.15 E-value=5.1e+02 Score=27.66 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=16.1
Q ss_pred CCEEEEEcccccCCccCCcEEEEeCCCC
Q 040145 253 DGKLLVTEGWLWPFFVSPRGQVYDPSTD 280 (402)
Q Consensus 253 ~g~ly~~gG~~~~~~~~~~~~~yd~~~~ 280 (402)
++.+++.+|.+ +.+.+||..+-
T Consensus 140 ~~~~lvS~s~D------nsViiwn~~tF 161 (942)
T KOG0973|consen 140 DDSLLVSVSLD------NSVIIWNAKTF 161 (942)
T ss_pred CccEEEEeccc------ceEEEEccccc
Confidence 57788877764 47888887664
No 234
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=38.61 E-value=3.4e+02 Score=25.48 Aligned_cols=181 Identities=15% Similarity=0.017 Sum_probs=89.1
Q ss_pred eeEEEeecCCCcE-EeCCCCCCCCCCCCCCceEEEEcc-CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccc
Q 040145 119 IQWQVLDLTHYCW-HTIPAMPCKDKVCPHGFRCVSIPR-EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITAR 196 (402)
Q Consensus 119 ~~~~~~d~~~~~W-~~l~~~~~~~~~~~~~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r 196 (402)
..+.+.|..+.+- .+++... ..+....+.. +..+|+.+. + ..+-++|+.+++ .+...+...
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~-------~~h~~~~~s~Dgr~~yv~~r---d-----g~vsviD~~~~~--~v~~i~~G~ 78 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGG-------APHAGLKFSPDGRYLYVANR---D-----GTVSVIDLATGK--VVATIKVGG 78 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-ST-------TEEEEEE-TT-SSEEEEEET---T-----SEEEEEETTSSS--EEEEEE-SS
T ss_pred CEEEEEECCCCeEEEEEcCCC-------CceeEEEecCCCCEEEEEcC---C-----CeEEEEECCccc--EEEEEecCC
Confidence 3478889888763 3443222 2244444434 457888853 1 278999999987 333444444
Q ss_pred cceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEE-EcC--CCCC----CCcceeEEEECCEEEEEcccccCCcc
Q 040145 197 SFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWR-TIA--SMGT----NMASYDAAVLDGKLLVTEGWLWPFFV 268 (402)
Q Consensus 197 ~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~-~~~--~~~~----~~~~~~~~~~~g~ly~~gG~~~~~~~ 268 (402)
...+++.. +++..+++... .+.+.++|.+|.+=. .++ .++. +|-..-.....+..|++.-.+
T Consensus 79 ~~~~i~~s~DG~~~~v~n~~-----~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd----- 148 (369)
T PF02239_consen 79 NPRGIAVSPDGKYVYVANYE-----PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD----- 148 (369)
T ss_dssp EEEEEEE--TTTEEEEEEEE-----TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT-----
T ss_pred CcceEEEcCCCCEEEEEecC-----CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc-----
Confidence 44555543 55433333321 467889999886532 221 2221 222111122244445554322
Q ss_pred CCcEEEEeCCCCCeeeccc-cccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCcee
Q 040145 269 SPRGQVYDPSTDNWESMAV-GLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWE 326 (402)
Q Consensus 269 ~~~~~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~ 326 (402)
...++..|.....=..+.. ......+....--+++.|+++-...+.+-+.|.++++-.
T Consensus 149 ~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v 207 (369)
T PF02239_consen 149 TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLV 207 (369)
T ss_dssp TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE
T ss_pred CCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEE
Confidence 2367777766542111111 111222222233456767666666778999999887544
No 235
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=38.07 E-value=3e+02 Score=24.73 Aligned_cols=194 Identities=16% Similarity=0.295 Sum_probs=94.0
Q ss_pred cCCEEEEEe-CccCCCC----CCCceEEEEECCCCceee---cCC-CcccccceEEEEEC--------CEEEEEcCCCCC
Q 040145 155 REGTLFVCG-GMVSDVD----CPLDLVLKYEMQKNRWTV---MNK-MITARSFFASGVIG--------GMIYVAGGSSAD 217 (402)
Q Consensus 155 ~~~~i~v~G-G~~~~~~----~~~~~~~~~d~~t~~W~~---~~~-~~~~r~~~~~~~~~--------~~iyv~GG~~~~ 217 (402)
..+.|+++- |.-+... ..-..+.+||..|++-.+ +|+ ...+.....-.+++ +.+|+.--.
T Consensus 10 ~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~--- 86 (287)
T PF03022_consen 10 ECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSG--- 86 (287)
T ss_dssp TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETT---
T ss_pred CCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCC---
Confidence 477888883 3322111 234689999999997533 232 22234444433332 367776433
Q ss_pred CCCCCeeEEEcCCCCc-EEEcCCCCCCCcceeEEEECCEEEEE-ccccc----CCccCCcEEEEeCCCC-Ceeeccc---
Q 040145 218 LFELDSAEVLDPVKGN-WRTIASMGTNMASYDAAVLDGKLLVT-EGWLW----PFFVSPRGQVYDPSTD-NWESMAV--- 287 (402)
Q Consensus 218 ~~~~~~~~~yd~~t~~-W~~~~~~~~~~~~~~~~~~~g~ly~~-gG~~~----~~~~~~~~~~yd~~~~-~W~~~~~--- 287 (402)
...+.+||..+++ |+.......+.........+|..+-. .|..+ +........-|.+-+. ++-.++.
T Consensus 87 ---~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L 163 (287)
T PF03022_consen 87 ---GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVL 163 (287)
T ss_dssp ---TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHH
T ss_pred ---cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHh
Confidence 3479999999975 77665433333333444455554432 22110 0000012344444322 2222221
Q ss_pred ----------------cccC---CCceeEEEECCEEEEEeccCCcEEEEEeCCC----CceeecCCCCCCccccCCeEEE
Q 040145 288 ----------------GLRE---GWTGSSVVVYEHLFVVSELERMKLKVYDPST----DSWETIEGPPLPEQICKPFAVN 344 (402)
Q Consensus 288 ----------------~~~~---~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~----~~W~~~~~~~~p~~~~~~~~~~ 344 (402)
.... ...+.+.--+|.||+ +-...+.|.++|+.+ +....+. .-++......++.
T Consensus 164 ~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~-~~~~~~aI~~w~~~~~~~~~~~~~l~--~d~~~l~~pd~~~ 240 (287)
T PF03022_consen 164 RDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYF-TDVEQNAIGCWDPDGPYTPENFEILA--QDPRTLQWPDGLK 240 (287)
T ss_dssp CSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEE-EECCCTEEEEEETTTSB-GCCEEEEE--E-CC-GSSEEEEE
T ss_pred hCccccccccccccceeccccCCCCceEEECCCCcEEE-ecCCCCeEEEEeCCCCcCccchheeE--EcCceeeccceee
Confidence 0011 111112223677775 455578999999987 4556655 3343334555666
Q ss_pred EeC---CEEEEEecCc
Q 040145 345 ACD---CRVYVVGRNL 357 (402)
Q Consensus 345 ~~~---~~i~v~GG~~ 357 (402)
+.+ |.||++-...
T Consensus 241 i~~~~~g~L~v~snrl 256 (287)
T PF03022_consen 241 IDPEGDGYLWVLSNRL 256 (287)
T ss_dssp E-T--TS-EEEEE-S-
T ss_pred eccccCceEEEEECcc
Confidence 655 8899987643
No 236
>PF11134 Phage_stabilise: Phage stabilisation protein; InterPro: IPR021098 This entry represents the Bacteriophage P22, Gp10, DNA-stabilising protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are phage proteins involved with stabilising the head assembly unit and condensed DNA within the capsid [].
Probab=38.04 E-value=3.7e+02 Score=25.77 Aligned_cols=138 Identities=12% Similarity=0.114 Sum_probs=64.1
Q ss_pred eEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc------EEEcCC--CCCCC-cceeEEEECCEEEEEcccccCCccC
Q 040145 199 FASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN------WRTIAS--MGTNM-ASYDAAVLDGKLLVTEGWLWPFFVS 269 (402)
Q Consensus 199 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~------W~~~~~--~~~~~-~~~~~~~~~g~ly~~gG~~~~~~~~ 269 (402)
-++....+.|+++| .+++|+|...-.+ ....+. ++... ..++.+-+++.++++|.-...
T Consensus 186 vgl~~~r~~I~~fG--------~~TiEvf~nTGasd~~~~~y~r~pg~~Iq~GcAa~~s~~~~~~t~~wlg~~~~G---- 253 (469)
T PF11134_consen 186 VGLAVWRREIWCFG--------ASTIEVFYNTGASDFTQPPYQRQPGAMIQKGCAAKHSKTKFGNTVAWLGHDATG---- 253 (469)
T ss_pred EEEEEeeeeEEEEe--------cccEEEEEccCCcccccchhhhCCcceeeccccccceeeecCCEEEEeccCCCC----
Confidence 34667788999999 4566666543111 111111 11111 123445568888888874321
Q ss_pred CcEEEEeCCCCCeeecccccc----CCC------cee--EEEECCE-EEEEeccCCcEEEEEeCCCCce----eecCCCC
Q 040145 270 PRGQVYDPSTDNWESMAVGLR----EGW------TGS--SVVVYEH-LFVVSELERMKLKVYDPSTDSW----ETIEGPP 332 (402)
Q Consensus 270 ~~~~~yd~~~~~W~~~~~~~~----~~~------~~~--~~~~~~~-l~~~gg~~~~~~~~yd~~~~~W----~~~~~~~ 332 (402)
...+|-....+=..++...- ... .+. +...+++ +|++-= ....++||..+++| ..++. .
T Consensus 254 -~~sVy~~~gyq~~RIST~~IE~~l~~ya~~ela~af~et~~f~~h~~l~ihl--p~~tlcyD~at~~~~~qw~~l~t-g 329 (469)
T PF11134_consen 254 -APSVYRINGYQASRISTHAIEKALRSYAHDELAIAFMETYQFDGHEFLLIHL--PRKTLCYDAATSQWGEQWFILKT-G 329 (469)
T ss_pred -CceEEEecCCceeeeccHHHHHHHHhhccHHHHHHHHHHhhcCceEEEEEEc--CCceEEEEcccCCcccceEEEec-c
Confidence 22344444444344432110 000 000 1223333 455422 45889999999854 44443 2
Q ss_pred CCccccCCeEEEEeCCEEEE
Q 040145 333 LPEQICKPFAVNACDCRVYV 352 (402)
Q Consensus 333 ~p~~~~~~~~~~~~~~~i~v 352 (402)
+-...+..-..+..++++.|
T Consensus 330 ~~~~~~R~~~~~f~~~q~~V 349 (469)
T PF11134_consen 330 FYDEPYRAIDFMFFDNQITV 349 (469)
T ss_pred ccCCcceeeeeEEeCCeeEe
Confidence 32221222234445555543
No 237
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.53 E-value=3.5e+02 Score=25.35 Aligned_cols=146 Identities=12% Similarity=0.179 Sum_probs=75.4
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCC--ceeec--CC----CcccccceEEEEECC---EEEEEcCCCCCCCCCCee
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKN--RWTVM--NK----MITARSFFASGVIGG---MIYVAGGSSADLFELDSA 224 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~--~W~~~--~~----~~~~r~~~~~~~~~~---~iyv~GG~~~~~~~~~~~ 224 (402)
.-.|+.+||.. ..+.+.+||..+. .|+.- |. |-.|-+...+.++.+ .-++.+-. ...+
T Consensus 160 ~p~Iva~GGke-----~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~------~hqv 228 (412)
T KOG3881|consen 160 DPYIVATGGKE-----NINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITR------YHQV 228 (412)
T ss_pred CCceEecCchh-----cccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEec------ceeE
Confidence 44788889973 2567888887765 46542 21 234444445555543 23333322 5668
Q ss_pred EEEcCCCCcEEEcCCCCCCCcceeEE--EECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE--E-E
Q 040145 225 EVLDPVKGNWRTIASMGTNMASYDAA--VLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS--V-V 299 (402)
Q Consensus 225 ~~yd~~t~~W~~~~~~~~~~~~~~~~--~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~--~-~ 299 (402)
-.||+..++ +.+..+...-...+++ ...+...++|-. ...+..||..++.--... ..+..++. + +
T Consensus 229 R~YDt~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~------~g~l~~FD~r~~kl~g~~---~kg~tGsirsih~ 298 (412)
T KOG3881|consen 229 RLYDTRHQR-RPVAQFDFLENPISSTGLTPSGNFIYTGNT------KGQLAKFDLRGGKLLGCG---LKGITGSIRSIHC 298 (412)
T ss_pred EEecCcccC-cceeEeccccCcceeeeecCCCcEEEEecc------cchhheecccCceeeccc---cCCccCCcceEEE
Confidence 899998654 2232222222222222 224444344432 236788998876532221 11122222 2 2
Q ss_pred E-CCEEEEEeccCCcEEEEEeCCCC
Q 040145 300 V-YEHLFVVSELERMKLKVYDPSTD 323 (402)
Q Consensus 300 ~-~~~l~~~gg~~~~~~~~yd~~~~ 323 (402)
. +..+...+|.+ ..+.+||.+++
T Consensus 299 hp~~~~las~GLD-RyvRIhD~ktr 322 (412)
T KOG3881|consen 299 HPTHPVLASCGLD-RYVRIHDIKTR 322 (412)
T ss_pred cCCCceEEeeccc-eeEEEeecccc
Confidence 2 33566667764 46888999874
No 238
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=36.07 E-value=4.4e+02 Score=26.09 Aligned_cols=98 Identities=11% Similarity=0.105 Sum_probs=57.3
Q ss_pred CCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCcee--ecCC
Q 040145 114 KCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWT--VMNK 191 (402)
Q Consensus 114 ~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~--~~~~ 191 (402)
++....++.+|+...++-+.+.-...+- +..-.+++......-+++|-.+ .++..||..++.-+ +.+-
T Consensus 231 ~g~~~~d~ciYE~~r~klqrvsvtsipL---~s~v~~ca~sp~E~kLvlGC~D-------gSiiLyD~~~~~t~~~ka~~ 300 (545)
T PF11768_consen 231 KGEPSADSCIYECSRNKLQRVSVTSIPL---PSQVICCARSPSEDKLVLGCED-------GSIILYDTTRGVTLLAKAEF 300 (545)
T ss_pred CCCceeEEEEEEeecCceeEEEEEEEec---CCcceEEecCcccceEEEEecC-------CeEEEEEcCCCeeeeeeecc
Confidence 3445567788888877665443221111 1223344443466777787652 27999999877422 2222
Q ss_pred CcccccceEEEE--ECCEEEEEcCCCCCCCCCCeeEEEcCCCCc
Q 040145 192 MITARSFFASGV--IGGMIYVAGGSSADLFELDSAEVLDPVKGN 233 (402)
Q Consensus 192 ~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 233 (402)
+| +... -++-++++|+. ...+.+||..-+.
T Consensus 301 ~P------~~iaWHp~gai~~V~s~------qGelQ~FD~ALsp 332 (545)
T PF11768_consen 301 IP------TLIAWHPDGAIFVVGSE------QGELQCFDMALSP 332 (545)
T ss_pred cc------eEEEEcCCCcEEEEEcC------CceEEEEEeecCc
Confidence 22 2222 26778888876 5678999987664
No 239
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=35.75 E-value=4.8e+02 Score=26.40 Aligned_cols=63 Identities=14% Similarity=0.161 Sum_probs=38.6
Q ss_pred cCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCC--cccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCC
Q 040145 155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKM--ITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVK 231 (402)
Q Consensus 155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~--~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t 231 (402)
.....+.+|.. ...+++||+.. .|-..+.+ +..|.--+.+-. +++++-+|+. ..+-.||+.+
T Consensus 35 ~kS~~lAvsRt-------~g~IEiwN~~~-~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~s-------g~i~EwDl~~ 99 (691)
T KOG2048|consen 35 HKSNQLAVSRT-------DGNIEIWNLSN-NWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLS-------GSITEWDLHT 99 (691)
T ss_pred ccCCceeeecc-------CCcEEEEccCC-CceeeEEEecCCCCceeeEEEccCCeEEeecCC-------ceEEEEeccc
Confidence 34455555544 34799999987 46554433 444555566666 7788888874 3445555554
Q ss_pred C
Q 040145 232 G 232 (402)
Q Consensus 232 ~ 232 (402)
.
T Consensus 100 l 100 (691)
T KOG2048|consen 100 L 100 (691)
T ss_pred C
Confidence 3
No 240
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=35.56 E-value=4.1e+02 Score=25.54 Aligned_cols=61 Identities=15% Similarity=0.112 Sum_probs=37.5
Q ss_pred CcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEecccccc
Q 040145 312 RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEK 372 (402)
Q Consensus 312 ~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~ 372 (402)
...+.++|..+.+.+.+.++|........-...+.+|++||-=........-||.+||...
T Consensus 366 ~~~laI~d~~~kt~t~V~glP~~~is~~~~~~~ve~G~aYi~Vtt~~g~~~~IY~iDp~Ta 426 (435)
T PF14298_consen 366 AKKLAIFDVSNKTFTWVTGLPADLISGFGNAPYVENGKAYIPVTTEDGSDPYIYKIDPATA 426 (435)
T ss_pred cceEEEEEccCceeEEeccCChhhccccccceEeeCCEEEEEEeecCCCceeEEEEcCccc
Confidence 3578899999988888875554411233334556788877733212221357999998665
No 241
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=35.20 E-value=2.7e+02 Score=23.28 Aligned_cols=83 Identities=8% Similarity=0.016 Sum_probs=46.5
Q ss_pred CCCCceEEEEECCCCceeecCCCccc-ccce-EEEEEC--CEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCc
Q 040145 170 DCPLDLVLKYEMQKNRWTVMNKMITA-RSFF-ASGVIG--GMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMA 245 (402)
Q Consensus 170 ~~~~~~~~~~d~~t~~W~~~~~~~~~-r~~~-~~~~~~--~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~ 245 (402)
+.....+|++|..++.|..+.--+.. .... -+.-++ ..++++|..-+.-..-..+++|++.|+.-+.+-+......
T Consensus 84 eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~dkkq 163 (200)
T PF15525_consen 84 EEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWKDKKQ 163 (200)
T ss_pred cccceeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeeccccce
Confidence 34677999999999988765211111 1111 222233 3455555432222223468999999998888766555433
Q ss_pred ceeEEEE
Q 040145 246 SYDAAVL 252 (402)
Q Consensus 246 ~~~~~~~ 252 (402)
....+..
T Consensus 164 QVis~e~ 170 (200)
T PF15525_consen 164 QVISAEK 170 (200)
T ss_pred eEEEEEE
Confidence 3333433
No 242
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=34.58 E-value=99 Score=22.21 Aligned_cols=50 Identities=28% Similarity=0.268 Sum_probs=32.2
Q ss_pred cEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCC
Q 040145 271 RGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPS 321 (402)
Q Consensus 271 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~ 321 (402)
.+..|||.+++.+.+...+.. -.+.++.-++..+++.......|.+|-.+
T Consensus 38 Rll~ydp~t~~~~vl~~~L~f-pNGVals~d~~~vlv~Et~~~Ri~rywl~ 87 (89)
T PF03088_consen 38 RLLRYDPSTKETTVLLDGLYF-PNGVALSPDESFVLVAETGRYRILRYWLK 87 (89)
T ss_dssp EEEEEETTTTEEEEEEEEESS-EEEEEE-TTSSEEEEEEGGGTEEEEEESS
T ss_pred CEEEEECCCCeEEEehhCCCc-cCeEEEcCCCCEEEEEeccCceEEEEEEe
Confidence 589999999999887653321 12222344666666666667788888553
No 243
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.35 E-value=4e+02 Score=25.02 Aligned_cols=96 Identities=16% Similarity=0.108 Sum_probs=46.8
Q ss_pred CCceEEEEECCCCc--eeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeE
Q 040145 172 PLDLVLKYEMQKNR--WTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDA 249 (402)
Q Consensus 172 ~~~~~~~~d~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~ 249 (402)
....+-+||+.+++ -..++-+-.+....+...-++.|| +|-. ...+..||..++.--.. .+..--.....
T Consensus 224 ~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy-~gn~------~g~l~~FD~r~~kl~g~-~~kg~tGsirs 295 (412)
T KOG3881|consen 224 RYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIY-TGNT------KGQLAKFDLRGGKLLGC-GLKGITGSIRS 295 (412)
T ss_pred cceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEE-Eecc------cchhheecccCceeecc-ccCCccCCcce
Confidence 35688899998653 111222222222222222234444 4433 45677888887642111 01111112222
Q ss_pred EEE-C-CEEEEEcccccCCccCCcEEEEeCCCCC
Q 040145 250 AVL-D-GKLLVTEGWLWPFFVSPRGQVYDPSTDN 281 (402)
Q Consensus 250 ~~~-~-g~ly~~gG~~~~~~~~~~~~~yd~~~~~ 281 (402)
..+ . +.+...+|.+ +.+-+||.++++
T Consensus 296 ih~hp~~~~las~GLD------RyvRIhD~ktrk 323 (412)
T KOG3881|consen 296 IHCHPTHPVLASCGLD------RYVRIHDIKTRK 323 (412)
T ss_pred EEEcCCCceEEeeccc------eeEEEeecccch
Confidence 333 3 3577777764 467889988743
No 244
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=32.75 E-value=4.6e+02 Score=25.32 Aligned_cols=175 Identities=12% Similarity=0.045 Sum_probs=0.0
Q ss_pred CEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEE
Q 040145 157 GTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWR 235 (402)
Q Consensus 157 ~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 235 (402)
+.|++.||.+. .+++||.....=..-.-+.....--.+..- .+.-++..|+ -..+-.+|.+|++-.
T Consensus 227 ~hLlLS~gmD~-------~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sf------D~~lKlwDtETG~~~ 293 (503)
T KOG0282|consen 227 GHLLLSGGMDG-------LVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASF------DRFLKLWDTETGQVL 293 (503)
T ss_pred eeEEEecCCCc-------eEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeec------ceeeeeeccccceEE
Q ss_pred EcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCC-----------CeeeccccccCCCceeEEEECCEE
Q 040145 236 TIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTD-----------NWESMAVGLREGWTGSSVVVYEHL 304 (402)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~-----------~W~~~~~~~~~~~~~~~~~~~~~l 304 (402)
.--..-........-.-|..+++.||.+ ..+..||+.++ .|..+.- .+.++...+..-+..+
T Consensus 294 ~~f~~~~~~~cvkf~pd~~n~fl~G~sd------~ki~~wDiRs~kvvqeYd~hLg~i~~i~F-~~~g~rFissSDdks~ 366 (503)
T KOG0282|consen 294 SRFHLDKVPTCVKFHPDNQNIFLVGGSD------KKIRQWDIRSGKVVQEYDRHLGAILDITF-VDEGRRFISSSDDKSV 366 (503)
T ss_pred EEEecCCCceeeecCCCCCcEEEEecCC------CcEEEEeccchHHHHHHHhhhhheeeeEE-ccCCceEeeeccCccE
Q ss_pred EEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEe
Q 040145 305 FVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVG 354 (402)
Q Consensus 305 ~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~G 354 (402)
.+.--. ......|......-+.-.-..-|. -..+++-..+++|+|+.
T Consensus 367 riWe~~-~~v~ik~i~~~~~hsmP~~~~~P~--~~~~~aQs~dN~i~ifs 413 (503)
T KOG0282|consen 367 RIWENR-IPVPIKNIADPEMHTMPCLTLHPN--GKWFAAQSMDNYIAIFS 413 (503)
T ss_pred EEEEcC-CCccchhhcchhhccCcceecCCC--CCeehhhccCceEEEEe
No 245
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=32.60 E-value=6.5e+02 Score=27.00 Aligned_cols=151 Identities=14% Similarity=0.192 Sum_probs=86.7
Q ss_pred CEEEEEeCcc--CCC-CCCCceEEEEECCC-CceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCC
Q 040145 157 GTLFVCGGMV--SDV-DCPLDLVLKYEMQK-NRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKG 232 (402)
Q Consensus 157 ~~i~v~GG~~--~~~-~~~~~~~~~~d~~t-~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 232 (402)
+..|+.|-.. .+. +.....+.+|-... ++-+.+..+-..-...+.+.+++++.+.=| ..+-.|+..++
T Consensus 787 ~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~In--------~~vrLye~t~~ 858 (1096)
T KOG1897|consen 787 NTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGIN--------QSVRLYEWTTE 858 (1096)
T ss_pred ceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEecC--------cEEEEEEcccc
Confidence 4566665321 111 12345566666655 666666666655556677778888766543 45778877665
Q ss_pred c-EEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccC
Q 040145 233 N-WRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELE 311 (402)
Q Consensus 233 ~-W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~ 311 (402)
+ -+.-.....+-.....-+.++.|++--- ..+-.+..|+..++...+++....+.|..++..+++..|+.+...
T Consensus 859 ~eLr~e~~~~~~~~aL~l~v~gdeI~VgDl-----m~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~ 933 (1096)
T KOG1897|consen 859 RELRIECNISNPIIALDLQVKGDEIAVGDL-----MRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENS 933 (1096)
T ss_pred ceehhhhcccCCeEEEEEEecCcEEEEeec-----cceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeeccc
Confidence 2 1111111122122223344667766322 223367889999999999987667777766667788888765443
Q ss_pred Cc-EEEEEeC
Q 040145 312 RM-KLKVYDP 320 (402)
Q Consensus 312 ~~-~~~~yd~ 320 (402)
++ .+..+|.
T Consensus 934 gNlf~v~~d~ 943 (1096)
T KOG1897|consen 934 GNLFTVRKDS 943 (1096)
T ss_pred ccEEEEEecC
Confidence 32 3445554
No 246
>PF08950 DUF1861: Protein of unknown function (DUF1861); InterPro: IPR015045 This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function. ; PDB: 2B4W_A.
Probab=32.16 E-value=2.6e+02 Score=24.95 Aligned_cols=60 Identities=8% Similarity=0.075 Sum_probs=34.9
Q ss_pred EEECCEEEEEcccccCCc-cCCcEEEEeCC-CCCeeeccccccCCCcee-EEEECCEEEEEecc
Q 040145 250 AVLDGKLLVTEGWLWPFF-VSPRGQVYDPS-TDNWESMAVGLREGWTGS-SVVVYEHLFVVSEL 310 (402)
Q Consensus 250 ~~~~g~ly~~gG~~~~~~-~~~~~~~yd~~-~~~W~~~~~~~~~~~~~~-~~~~~~~l~~~gg~ 310 (402)
...+|+.++.|-...... ..+.+..|.-. .++|+.++..+.-..... .+.++|.|+ +||.
T Consensus 33 F~~~Gk~~IaGRVE~Rdswe~S~V~fF~e~g~~~w~~v~~~~~~~LqDPF~t~I~geli-fGGv 95 (298)
T PF08950_consen 33 FEYNGKTVIAGRVEKRDSWEHSEVRFFEETGKDEWTPVEGAPVFQLQDPFVTRIQGELI-FGGV 95 (298)
T ss_dssp EEETTEEEEEEEEE-TT-SS--EEEEEEEEETTEEEE-TT---BS-EEEEEEEETTEEE-EEEE
T ss_pred eeECCEEEEEeeeecCCchhccEEEEEEEeCCCeEEECCCcceEEecCcceeeECCEEE-EeeE
Confidence 456899999887654333 34466777665 789999986443333333 367888875 5775
No 247
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=31.43 E-value=3.6e+02 Score=23.60 Aligned_cols=151 Identities=17% Similarity=0.098 Sum_probs=69.9
Q ss_pred CCEEEEEc--CCCCCCCCCCee-EEEcCC-CCcEEEcCCCCCC------Cccee--EEEECCEEEEEcccccCCccCCcE
Q 040145 205 GGMIYVAG--GSSADLFELDSA-EVLDPV-KGNWRTIASMGTN------MASYD--AAVLDGKLLVTEGWLWPFFVSPRG 272 (402)
Q Consensus 205 ~~~iyv~G--G~~~~~~~~~~~-~~yd~~-t~~W~~~~~~~~~------~~~~~--~~~~~g~ly~~gG~~~~~~~~~~~ 272 (402)
+++|+++. +..........+ +.+... -.+|+....++.. ..... ...-+|.+++..-...... ....
T Consensus 58 ~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~~~~~~~~~-~~~~ 136 (275)
T PF13088_consen 58 DGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAPYYHESGGS-FSAF 136 (275)
T ss_dssp TSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEEEEEESSCE-EEEE
T ss_pred CCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEEEeeccccC-cceE
Confidence 78888875 221111101121 233333 3479877543321 11112 3334888888721111111 2234
Q ss_pred EEEeCC-CCCeeeccccccC-CCceeE-EE-ECCEEEEEeccC--CcEEEEEeCC-CCceeecCCCCCCccccCCeEEEE
Q 040145 273 QVYDPS-TDNWESMAVGLRE-GWTGSS-VV-VYEHLFVVSELE--RMKLKVYDPS-TDSWETIEGPPLPEQICKPFAVNA 345 (402)
Q Consensus 273 ~~yd~~-~~~W~~~~~~~~~-~~~~~~-~~-~~~~l~~~gg~~--~~~~~~yd~~-~~~W~~~~~~~~p~~~~~~~~~~~ 345 (402)
..|... -.+|+........ ...... +. -+|+|+++.... ......+..+ -.+|+......+|........+..
T Consensus 137 ~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~~~~~~~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~~ 216 (275)
T PF13088_consen 137 VYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTEGNDDIYISRSTDGGRTWSPPQPTNLPNPNSSISLVRL 216 (275)
T ss_dssp EEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEECSSTEEEEEEESSTTSS-EEEEEEECSSCCEEEEEEEC
T ss_pred EEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEccCCCcEEEEEECCCCCcCCCceecccCcccCCceEEEc
Confidence 445544 4579887753222 122222 22 378899886652 2234444444 458998653344532111112223
Q ss_pred eCCEEEEEecC
Q 040145 346 CDCRVYVVGRN 356 (402)
Q Consensus 346 ~~~~i~v~GG~ 356 (402)
.+++++++...
T Consensus 217 ~~g~~~~~~~~ 227 (275)
T PF13088_consen 217 SDGRLLLVYNN 227 (275)
T ss_dssp TTSEEEEEEEC
T ss_pred CCCCEEEEEEC
Confidence 57788888883
No 248
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=31.05 E-value=5.5e+02 Score=25.63 Aligned_cols=164 Identities=12% Similarity=0.096 Sum_probs=83.5
Q ss_pred ceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEEC
Q 040145 174 DLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLD 253 (402)
Q Consensus 174 ~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~ 253 (402)
+.+.+||..++.-..+-.- .-..-..+.+++.+.|.|.. ...+-+||+.+.+- +..+...-....+..++
T Consensus 311 ~tVkVW~v~n~~~l~l~~~--h~~~V~~v~~~~~~lvsgs~------d~~v~VW~~~~~~c--l~sl~gH~~~V~sl~~~ 380 (537)
T KOG0274|consen 311 NTVKVWDVTNGACLNLLRG--HTGPVNCVQLDEPLLVSGSY------DGTVKVWDPRTGKC--LKSLSGHTGRVYSLIVD 380 (537)
T ss_pred ceEEEEeccCcceEEEecc--ccccEEEEEecCCEEEEEec------CceEEEEEhhhcee--eeeecCCcceEEEEEec
Confidence 4788899886653332110 01111234456777777776 34688889886553 22222211222233456
Q ss_pred C-EEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCceeecCCCC
Q 040145 254 G-KLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPP 332 (402)
Q Consensus 254 g-~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~ 332 (402)
+ ..++-|+.+ ..+.++|+.+.. .-+.........-....+.+++++-+.. ...|..+|.++++=.++-.
T Consensus 381 ~~~~~~Sgs~D------~~IkvWdl~~~~-~c~~tl~~h~~~v~~l~~~~~~Lvs~~a-D~~Ik~WD~~~~~~~~~~~-- 450 (537)
T KOG0274|consen 381 SENRLLSGSLD------TTIKVWDLRTKR-KCIHTLQGHTSLVSSLLLRDNFLVSSSA-DGTIKLWDAEEGECLRTLE-- 450 (537)
T ss_pred CcceEEeeeec------cceEeecCCchh-hhhhhhcCCcccccccccccceeEeccc-cccEEEeecccCceeeeec--
Confidence 6 555555543 368888887764 1111101111111123456677766555 4578888988876555432
Q ss_pred CCccccCCeEEEEeCCEEEEEecCcee
Q 040145 333 LPEQICKPFAVNACDCRVYVVGRNLHV 359 (402)
Q Consensus 333 ~p~~~~~~~~~~~~~~~i~v~GG~~~~ 359 (402)
-+. ..+..+...+...++..+.+..
T Consensus 451 ~~~--~~~v~~l~~~~~~il~s~~~~~ 475 (537)
T KOG0274|consen 451 GRH--VGGVSALALGKEEILCSSDDGS 475 (537)
T ss_pred cCC--cccEEEeecCcceEEEEecCCe
Confidence 211 2222333333466666665443
No 249
>PRK10115 protease 2; Provisional
Probab=30.50 E-value=6.3e+02 Score=26.14 Aligned_cols=148 Identities=11% Similarity=-0.025 Sum_probs=76.5
Q ss_pred CceEEEEEC--CCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCC-CCcEEEcCCCCCCCcceeE
Q 040145 173 LDLVLKYEM--QKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPV-KGNWRTIASMGTNMASYDA 249 (402)
Q Consensus 173 ~~~~~~~d~--~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~-t~~W~~~~~~~~~~~~~~~ 249 (402)
.+.++.|+. .++.|..+-+.+.. ........++.+|+.-..+.. ...+...+.. ++.|+.+-+......--..
T Consensus 246 ~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ly~~tn~~~~---~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~ 321 (686)
T PRK10115 246 TSEVLLLDAELADAEPFVFLPRRKD-HEYSLDHYQHRFYLRSNRHGK---NFGLYRTRVRDEQQWEELIPPRENIMLEGF 321 (686)
T ss_pred cccEEEEECcCCCCCceEEEECCCC-CEEEEEeCCCEEEEEEcCCCC---CceEEEecCCCcccCeEEECCCCCCEEEEE
Confidence 457888883 23444332222211 222333446788887544221 3446666766 5789887544222222233
Q ss_pred EEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEE----EC-CEEEEE-eccC-CcEEEEEeCCC
Q 040145 250 AVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVV----VY-EHLFVV-SELE-RMKLKVYDPST 322 (402)
Q Consensus 250 ~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~----~~-~~l~~~-gg~~-~~~~~~yd~~~ 322 (402)
...++.|++..-..+ ...++++|..++....+.. +......... .+ +.+++. .+.. ...++.||+++
T Consensus 322 ~~~~~~l~~~~~~~g----~~~l~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~ 395 (686)
T PRK10115 322 TLFTDWLVVEERQRG----LTSLRQINRKTREVIGIAF--DDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDT 395 (686)
T ss_pred EEECCEEEEEEEeCC----EEEEEEEcCCCCceEEecC--CCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCC
Confidence 445777766544321 2367888876655555441 1111111111 12 344433 2222 56899999999
Q ss_pred CceeecCC
Q 040145 323 DSWETIEG 330 (402)
Q Consensus 323 ~~W~~~~~ 330 (402)
.+|+.+..
T Consensus 396 ~~~~~l~~ 403 (686)
T PRK10115 396 GERRVLKQ 403 (686)
T ss_pred CcEEEEEe
Confidence 98887764
No 250
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=30.03 E-value=4.2e+02 Score=26.77 Aligned_cols=58 Identities=16% Similarity=0.098 Sum_probs=37.8
Q ss_pred CeeEEEcCCCCcE--EEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCC
Q 040145 222 DSAEVLDPVKGNW--RTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN 281 (402)
Q Consensus 222 ~~~~~yd~~t~~W--~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~ 281 (402)
..+.+|+|.+..= .+-...-..|..-...+++|++.++-|++...+ +.+..||-++-.
T Consensus 742 g~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~Se--RQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 742 GTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSE--RQVQMYDAQTLD 801 (1012)
T ss_pred ceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccch--hhhhhhhhhhcc
Confidence 4678899987642 222223334555556678999999988875544 378889877644
No 251
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=27.84 E-value=4.7e+02 Score=23.84 Aligned_cols=110 Identities=11% Similarity=0.169 Sum_probs=55.4
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK 183 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t 183 (402)
.+.++++|.+. +....||..+..-..-.. |... .-.....+-....+.||+.|..++ .+-+||-.+
T Consensus 227 sGefllvgTdH----p~~rlYdv~T~Qcfvsan-Pd~q--ht~ai~~V~Ys~t~~lYvTaSkDG-------~IklwDGVS 292 (430)
T KOG0640|consen 227 SGEFLLVGTDH----PTLRLYDVNTYQCFVSAN-PDDQ--HTGAITQVRYSSTGSLYVTASKDG-------AIKLWDGVS 292 (430)
T ss_pred CCceEEEecCC----CceeEEeccceeEeeecC-cccc--cccceeEEEecCCccEEEEeccCC-------cEEeecccc
Confidence 45555666443 346788887765443222 2111 112223344445789999987643 677888877
Q ss_pred Ccee-ecCCCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCc
Q 040145 184 NRWT-VMNKMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGN 233 (402)
Q Consensus 184 ~~W~-~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 233 (402)
++-- .+......-.-+++.. -+++.++..|. -+.+..+...|++
T Consensus 293 ~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~------DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 293 NRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK------DSTVKLWEISTGR 338 (430)
T ss_pred HHHHHHHHhhcCCceeeeEEEccCCeEEeecCC------cceeeeeeecCCc
Confidence 7532 2222111111222222 35666666665 2344555555543
No 252
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=27.62 E-value=5.4e+02 Score=24.48 Aligned_cols=134 Identities=13% Similarity=0.164 Sum_probs=73.3
Q ss_pred eEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCC---cEEEcCCCCCCCcceeEE
Q 040145 175 LVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKG---NWRTIASMGTNMASYDAA 250 (402)
Q Consensus 175 ~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~---~W~~~~~~~~~~~~~~~~ 250 (402)
.+..+|..|+.-...-+-..+....+++-+ ++.=+|.|+.+ ..+..+|...+ .|+-+.. ++-...+.
T Consensus 292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d------r~i~~wdlDgn~~~~W~gvr~---~~v~dlai 362 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPD------RTIIMWDLDGNILGNWEGVRD---PKVHDLAI 362 (519)
T ss_pred heeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCC------CcEEEecCCcchhhccccccc---ceeEEEEE
Confidence 477888888865554322223333344433 66778888874 34556666543 5765433 33333444
Q ss_pred EECCE-EEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCceeec
Q 040145 251 VLDGK-LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETI 328 (402)
Q Consensus 251 ~~~g~-ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~ 328 (402)
..+|+ ++.++- ...+..|+.++..=..+-. ...+....+..-++++.++-- ....+..+|.+ .|..+
T Consensus 363 t~Dgk~vl~v~~-------d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL-~~qei~LWDl~--e~~lv 430 (519)
T KOG0293|consen 363 TYDGKYVLLVTV-------DKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNL-QDQEIHLWDLE--ENKLV 430 (519)
T ss_pred cCCCcEEEEEec-------ccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEc-ccCeeEEeecc--hhhHH
Confidence 55665 455442 2367778776644221111 122233334556788777733 36688889987 45544
No 253
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=26.69 E-value=91 Score=16.46 Aligned_cols=20 Identities=10% Similarity=0.017 Sum_probs=15.0
Q ss_pred cCCeEEEEeCCEEEEEecCc
Q 040145 338 CKPFAVNACDCRVYVVGRNL 357 (402)
Q Consensus 338 ~~~~~~~~~~~~i~v~GG~~ 357 (402)
+.+..+++.|++..++|+.+
T Consensus 4 ~~H~K~~v~D~~~~~iGs~N 23 (28)
T smart00155 4 VLHTKLMIVDDEIAYIGSAN 23 (28)
T ss_pred cEEeEEEEEcCCEEEEeCcc
Confidence 34457788899999999854
No 254
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=25.91 E-value=51 Score=23.97 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=22.5
Q ss_pred CCCCCCCcHHHHHHhhccCccchhhh
Q 040145 50 EPFIPGLPDDVALNCLLRLPVESHAA 75 (402)
Q Consensus 50 ~~~~~~Lp~dl~~~il~rlp~~~l~~ 75 (402)
...|..||.|+...||..|+-.++..
T Consensus 69 ~~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 69 NNYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CCchhhCCHHHHHHHHHcCCHHHHHH
Confidence 47899999999999999998877654
No 255
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=25.67 E-value=1.2e+02 Score=16.27 Aligned_cols=24 Identities=21% Similarity=0.140 Sum_probs=14.9
Q ss_pred EECCEEEEEcccccCCccCCcEEEEeCCCCC
Q 040145 251 VLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN 281 (402)
Q Consensus 251 ~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~ 281 (402)
..+|.+|+.... ..++++|.++++
T Consensus 4 ~~~~~v~~~~~~-------g~l~a~d~~~G~ 27 (33)
T smart00564 4 LSDGTVYVGSTD-------GTLYALDAKTGE 27 (33)
T ss_pred EECCEEEEEcCC-------CEEEEEEcccCc
Confidence 345666664332 368888887764
No 256
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=25.14 E-value=6.2e+02 Score=24.36 Aligned_cols=58 Identities=10% Similarity=-0.036 Sum_probs=29.3
Q ss_pred eEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcce-e-EE-EECCEEEEEccccc
Q 040145 199 FASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASY-D-AA-VLDGKLLVTEGWLW 264 (402)
Q Consensus 199 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~-~-~~-~~~g~ly~~gG~~~ 264 (402)
++.+..+.-.|+++|.. ...++++...|+.--.+ ..+++.. . .. .-||.+++.||.++
T Consensus 85 ~al~s~n~G~~l~ag~i-----~g~lYlWelssG~LL~v---~~aHYQ~ITcL~fs~dgs~iiTgskDg 145 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTI-----SGNLYLWELSSGILLNV---LSAHYQSITCLKFSDDGSHIITGSKDG 145 (476)
T ss_pred eeeecCCCceEEEeecc-----cCcEEEEEeccccHHHH---HHhhccceeEEEEeCCCcEEEecCCCc
Confidence 34455555556666631 45678877777641111 1112211 1 11 22778888888653
No 257
>PF08950 DUF1861: Protein of unknown function (DUF1861); InterPro: IPR015045 This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function. ; PDB: 2B4W_A.
Probab=24.73 E-value=2.3e+02 Score=25.25 Aligned_cols=59 Identities=15% Similarity=0.224 Sum_probs=36.3
Q ss_pred EECCEEEEEcCCCCCCC-CCCeeEEEcCC-CCcEEEcCC-CCCCCcceeEEEECCEEEEEccc
Q 040145 203 VIGGMIYVAGGSSADLF-ELDSAEVLDPV-KGNWRTIAS-MGTNMASYDAAVLDGKLLVTEGW 262 (402)
Q Consensus 203 ~~~~~iyv~GG~~~~~~-~~~~~~~yd~~-t~~W~~~~~-~~~~~~~~~~~~~~g~ly~~gG~ 262 (402)
..+++.+++|-...... ..+.|..|.-. .+.|+.++. +.......-.+-++|.+. +||.
T Consensus 34 ~~~Gk~~IaGRVE~Rdswe~S~V~fF~e~g~~~w~~v~~~~~~~LqDPF~t~I~geli-fGGv 95 (298)
T PF08950_consen 34 EYNGKTVIAGRVEKRDSWEHSEVRFFEETGKDEWTPVEGAPVFQLQDPFVTRIQGELI-FGGV 95 (298)
T ss_dssp EETTEEEEEEEEE-TT-SS--EEEEEEEEETTEEEE-TT---BS-EEEEEEEETTEEE-EEEE
T ss_pred eECCEEEEEeeeecCCchhccEEEEEEEeCCCeEEECCCcceEEecCcceeeECCEEE-EeeE
Confidence 46788888886633222 25778888776 889999987 444556666777889884 4664
No 258
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=24.53 E-value=6.8e+02 Score=24.59 Aligned_cols=97 Identities=15% Similarity=0.119 Sum_probs=52.7
Q ss_pred CCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE
Q 040145 221 LDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV 300 (402)
Q Consensus 221 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 300 (402)
++.+..+|+.++.=-.-.++...|. ......++.+.+++|..+... ..+...|+.+-.-..-+. -.-.+.+...+-
T Consensus 374 ls~LvllD~~tg~~l~~S~~~~Ir~-r~~~~~~~~~vaI~g~~G~~~--ikLvlid~~tLev~kes~-~~i~~~S~l~~~ 449 (489)
T PF05262_consen 374 LSELVLLDSDTGDTLKRSPVNGIRG-RTFYEREDDLVAIAGCSGNAA--IKLVLIDPETLEVKKESE-DEISWQSSLIVD 449 (489)
T ss_pred ceeEEEEeCCCCceecccccceecc-ceeEEcCCCEEEEeccCCchh--eEEEecCcccceeeeecc-ccccccCceEEc
Confidence 6778889999876433334443333 333455777888888744322 245555777655433332 222233334455
Q ss_pred CCEEEEEe--ccCCcEEEEEeCC
Q 040145 301 YEHLFVVS--ELERMKLKVYDPS 321 (402)
Q Consensus 301 ~~~l~~~g--g~~~~~~~~yd~~ 321 (402)
++.+|+|- ..+...+-+||..
T Consensus 450 ~~~iyaVv~~~~g~~~L~rF~~~ 472 (489)
T PF05262_consen 450 GQMIYAVVKKDNGKWYLGRFDSN 472 (489)
T ss_pred CCeEEEEEEcCCCeEEEeecCcc
Confidence 77777654 2223456667665
No 259
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=24.39 E-value=4.2e+02 Score=22.06 Aligned_cols=65 Identities=11% Similarity=0.030 Sum_probs=36.8
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK 183 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t 183 (402)
+..+.++-|..+ ..+..||.....-..++.. ....+.....|..+++||..+ ...++.+||..+
T Consensus 71 g~~favi~g~~~---~~v~lyd~~~~~i~~~~~~---------~~n~i~wsP~G~~l~~~g~~n----~~G~l~~wd~~~ 134 (194)
T PF08662_consen 71 GNEFAVIYGSMP---AKVTLYDVKGKKIFSFGTQ---------PRNTISWSPDGRFLVLAGFGN----LNGDLEFWDVRK 134 (194)
T ss_pred CCEEEEEEccCC---cccEEEcCcccEeEeecCC---------CceEEEECCCCCEEEEEEccC----CCcEEEEEECCC
Confidence 455555544322 2577888864433333221 123455555788888888632 234789999884
Q ss_pred C
Q 040145 184 N 184 (402)
Q Consensus 184 ~ 184 (402)
.
T Consensus 135 ~ 135 (194)
T PF08662_consen 135 K 135 (194)
T ss_pred C
Confidence 3
No 260
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=24.27 E-value=6.3e+02 Score=24.80 Aligned_cols=62 Identities=10% Similarity=-0.031 Sum_probs=38.9
Q ss_pred CCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEE
Q 040145 172 PLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRT 236 (402)
Q Consensus 172 ~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 236 (402)
.++.++.+||.|+.=-.-+++..-|. .++...++.+.+++|+++... -.+...|+.+-.-..
T Consensus 373 ~ls~LvllD~~tg~~l~~S~~~~Ir~-r~~~~~~~~~vaI~g~~G~~~--ikLvlid~~tLev~k 434 (489)
T PF05262_consen 373 YLSELVLLDSDTGDTLKRSPVNGIRG-RTFYEREDDLVAIAGCSGNAA--IKLVLIDPETLEVKK 434 (489)
T ss_pred cceeEEEEeCCCCceecccccceecc-ceeEEcCCCEEEEeccCCchh--eEEEecCcccceeee
Confidence 57789999999987555555544333 345567788888888855432 223334777654433
No 261
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=22.73 E-value=5.8e+02 Score=23.14 Aligned_cols=59 Identities=20% Similarity=0.342 Sum_probs=36.2
Q ss_pred cCCEEEEEeCccCCCCCCCceEEEEE---CCCCceeecCCCcccccceEEEEE-------CCEEEEEcCCCCCCCCCCee
Q 040145 155 REGTLFVCGGMVSDVDCPLDLVLKYE---MQKNRWTVMNKMITARSFFASGVI-------GGMIYVAGGSSADLFELDSA 224 (402)
Q Consensus 155 ~~~~i~v~GG~~~~~~~~~~~~~~~d---~~t~~W~~~~~~~~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~ 224 (402)
.+|..++.||.+. .++.+| -..|.|..- .|..+++ +..|+-+|- -..+
T Consensus 57 P~gs~~aSgG~Dr-------~I~LWnv~gdceN~~~lk--------gHsgAVM~l~~~~d~s~i~S~gt-------Dk~v 114 (338)
T KOG0265|consen 57 PDGSCFASGGSDR-------AIVLWNVYGDCENFWVLK--------GHSGAVMELHGMRDGSHILSCGT-------DKTV 114 (338)
T ss_pred CCCCeEeecCCcc-------eEEEEeccccccceeeec--------cccceeEeeeeccCCCEEEEecC-------CceE
Confidence 4788888898732 455555 345566543 3444443 235555553 5678
Q ss_pred EEEcCCCCcEE
Q 040145 225 EVLDPVKGNWR 235 (402)
Q Consensus 225 ~~yd~~t~~W~ 235 (402)
..+|.+|++-.
T Consensus 115 ~~wD~~tG~~~ 125 (338)
T KOG0265|consen 115 RGWDAETGKRI 125 (338)
T ss_pred EEEecccceee
Confidence 99999988643
No 262
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=22.39 E-value=6.1e+02 Score=23.25 Aligned_cols=63 Identities=21% Similarity=0.271 Sum_probs=34.1
Q ss_pred cCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEE---ECCEEEEEcCCCCCCCCCCeeEEEcCCC
Q 040145 155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGV---IGGMIYVAGGSSADLFELDSAEVLDPVK 231 (402)
Q Consensus 155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~yd~~t 231 (402)
..|.++..|-.+ ..+.+||..|.. +..+..+........ -+|+.++.... -..+-.+|...
T Consensus 33 ~~G~~lAvGc~n-------G~vvI~D~~T~~---iar~lsaH~~pi~sl~WS~dgr~LltsS~------D~si~lwDl~~ 96 (405)
T KOG1273|consen 33 RWGDYLAVGCAN-------GRVVIYDFDTFR---IARMLSAHVRPITSLCWSRDGRKLLTSSR------DWSIKLWDLLK 96 (405)
T ss_pred cCcceeeeeccC-------CcEEEEEccccc---hhhhhhccccceeEEEecCCCCEeeeecC------CceeEEEeccC
Confidence 355666666442 279999999875 344443333222222 24555554443 34566777766
Q ss_pred Cc
Q 040145 232 GN 233 (402)
Q Consensus 232 ~~ 233 (402)
++
T Consensus 97 gs 98 (405)
T KOG1273|consen 97 GS 98 (405)
T ss_pred CC
Confidence 54
No 263
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=22.25 E-value=6.4e+02 Score=25.03 Aligned_cols=107 Identities=14% Similarity=0.084 Sum_probs=54.6
Q ss_pred CCEEEEEccc-ccCCccCCcEEEEeCCCCCeeeccc---cccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCceeec
Q 040145 253 DGKLLVTEGW-LWPFFVSPRGQVYDPSTDNWESMAV---GLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETI 328 (402)
Q Consensus 253 ~g~ly~~gG~-~~~~~~~~~~~~yd~~~~~W~~~~~---~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~ 328 (402)
+..|+.+.-. ..++...-+.-+|+...++-+.+.. +++..-...+..-+...+++|-. ...+..||..++.=..+
T Consensus 218 ~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~-DgSiiLyD~~~~~t~~~ 296 (545)
T PF11768_consen 218 PYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCE-DGSIILYDTTRGVTLLA 296 (545)
T ss_pred CcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEec-CCeEEEEEcCCCeeeee
Confidence 3455555432 1122223355678887776655542 22322222222334556666655 55799999987643322
Q ss_pred CCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEeccc
Q 040145 329 EGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 329 ~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~ 369 (402)
...-+|. +..--.+|.|+++|+... ++..||.
T Consensus 297 ka~~~P~-----~iaWHp~gai~~V~s~qG----elQ~FD~ 328 (545)
T PF11768_consen 297 KAEFIPT-----LIAWHPDGAIFVVGSEQG----ELQCFDM 328 (545)
T ss_pred eecccce-----EEEEcCCCcEEEEEcCCc----eEEEEEe
Confidence 2112231 222335888888888533 3555554
No 264
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=22.22 E-value=5.1e+02 Score=22.28 Aligned_cols=96 Identities=15% Similarity=0.142 Sum_probs=54.9
Q ss_pred eEEEECCEEEEEcccccCCccCCcEEEEeCCCCC--eeeccccccCCCceeE-EEECCEEEEEeccCCcEEEEEeCCCCc
Q 040145 248 DAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WESMAVGLREGWTGSS-VVVYEHLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 248 ~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
+....+|++|..-|..+. +.+.++|+.+++ |++--. +...++-. ...++.+|...-. ....+.||+++
T Consensus 50 GL~~~~g~i~esTG~yg~----S~ir~~~L~~gq~~~s~~l~--~~~~FgEGit~~gd~~y~LTw~-egvaf~~d~~t-- 120 (262)
T COG3823 50 GLEYLDGHILESTGLYGF----SKIRVSDLTTGQEIFSEKLA--PDTVFGEGITKLGDYFYQLTWK-EGVAFKYDADT-- 120 (262)
T ss_pred ceeeeCCEEEEecccccc----ceeEEEeccCceEEEEeecC--CccccccceeeccceEEEEEec-cceeEEEChHH--
Confidence 345568888888776532 478999998664 543322 23334333 6889999988654 44677788754
Q ss_pred eeecCCCCCCccccCCeEEEEeCCEEEEEec
Q 040145 325 WETIEGPPLPEQICKPFAVNACDCRVYVVGR 355 (402)
Q Consensus 325 W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG 355 (402)
.+++...+.+ ..+.+.+..+..|.+--|
T Consensus 121 ~~~lg~~~y~---GeGWgLt~d~~~LimsdG 148 (262)
T COG3823 121 LEELGRFSYE---GEGWGLTSDDKNLIMSDG 148 (262)
T ss_pred hhhhcccccC---CcceeeecCCcceEeeCC
Confidence 3444422222 223344444444444334
No 265
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=21.45 E-value=3.7e+02 Score=23.31 Aligned_cols=156 Identities=20% Similarity=0.225 Sum_probs=63.5
Q ss_pred ceEEEEccCCEEEEEeCccCCCCCCCceEEEEEC---CCCceeecCC-Cccc-ccceEEEEE--CCEEEEEcCCCCCCCC
Q 040145 148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEM---QKNRWTVMNK-MITA-RSFFASGVI--GGMIYVAGGSSADLFE 220 (402)
Q Consensus 148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~---~t~~W~~~~~-~~~~-r~~~~~~~~--~~~iyv~GG~~~~~~~ 220 (402)
+..++...++.+|.+-+. .++.+.+ .+++|...+. +... -..+...++ .+.||.+.....
T Consensus 36 ~~~i~~~P~g~lY~I~~~---------~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~~i~~d~~G~LYaV~~~G~---- 102 (229)
T PF14517_consen 36 FRDIAAGPNGRLYAIRND---------GLYRGSPSSSGGNTWDSGSKQIGDGGWNSFKFIFFDPTGVLYAVTPDGK---- 102 (229)
T ss_dssp -SEEEE-TTS-EEEEETT---------EEEEES---STT--HHHH-EEEE-S-GGG-SEEEE-TTS-EEEEETT-E----
T ss_pred cceEEEcCCceEEEEECC---------ceEEecCCccCcccccccCcccccCcccceeEEEecCCccEEEeccccc----
Confidence 455555457889988532 6777743 3445653221 2222 223334433 578998876311
Q ss_pred CCeeEEEcCCCCcEEE-cCC-C-CCCCcceeEEEE--CCEEEEEcccccCCccCCcEEE---EeCCCCCeeeccccc-cC
Q 040145 221 LDSAEVLDPVKGNWRT-IAS-M-GTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQV---YDPSTDNWESMAVGL-RE 291 (402)
Q Consensus 221 ~~~~~~yd~~t~~W~~-~~~-~-~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~---yd~~~~~W~~~~~~~-~~ 291 (402)
+-....++..+..|.. .+. . ...-.....+.. +|.||.+-... .++. .+..++.|....... ..
T Consensus 103 lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~~dg-------~~~~~~~p~~~~~~W~~~s~~v~~~ 175 (229)
T PF14517_consen 103 LYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAITPDG-------RLYRRYRPDGGSDRWLSGSGLVGGG 175 (229)
T ss_dssp EEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEETTE--------EEEE---SSTT--HHHH-EEEESS
T ss_pred eeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEcCCC-------ceEEeCCCCCCCCccccccceeccC
Confidence 1122334455667854 211 1 112222334443 78899886421 2333 334466787744322 22
Q ss_pred CCceeE---EEECCEEEEEeccCCcEEEEEeCCCCce
Q 040145 292 GWTGSS---VVVYEHLFVVSELERMKLKVYDPSTDSW 325 (402)
Q Consensus 292 ~~~~~~---~~~~~~l~~~gg~~~~~~~~yd~~~~~W 325 (402)
.+.... ..-+|.||.+-. ...+++|.+.++.+
T Consensus 176 gw~~~~~i~~~~~g~L~~V~~--~G~lyr~~~p~~~~ 210 (229)
T PF14517_consen 176 GWDSFHFIFFSPDGNLWAVKS--NGKLYRGRPPQNGC 210 (229)
T ss_dssp SGGGEEEEEE-TTS-EEEE-E--TTEEEEES---STT
T ss_pred CcccceEEeeCCCCcEEEEec--CCEEeccCCcccCC
Confidence 222222 234788998822 34678887766543
No 266
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=21.07 E-value=6.1e+02 Score=22.77 Aligned_cols=99 Identities=12% Similarity=0.123 Sum_probs=52.3
Q ss_pred CCeEEEEE-Ee-C--C----CCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEcc-C-----CEEEEEeCccCCC
Q 040145 104 DPWLFVFA-FH-K--C----TGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPR-E-----GTLFVCGGMVSDV 169 (402)
Q Consensus 104 ~~~l~~~g-g~-~--~----~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~-~-----~~i~v~GG~~~~~ 169 (402)
.+.|+++. |. . . .....+..||+.+++-.+.-.+|.........+...++.. + +.+|+.--.
T Consensus 11 ~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~---- 86 (287)
T PF03022_consen 11 CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSG---- 86 (287)
T ss_dssp TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETT----
T ss_pred CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCC----
Confidence 57788884 32 1 1 3356899999999985432223321111123444444422 1 367776432
Q ss_pred CCCCceEEEEECCCCc-eeecCCCcccccceEEEEECCEEE
Q 040145 170 DCPLDLVLKYEMQKNR-WTVMNKMITARSFFASGVIGGMIY 209 (402)
Q Consensus 170 ~~~~~~~~~~d~~t~~-W~~~~~~~~~r~~~~~~~~~~~iy 209 (402)
...+.+||..+++ |+.+.....+.-.+....+++..+
T Consensus 87 ---~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~ 124 (287)
T PF03022_consen 87 ---GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESF 124 (287)
T ss_dssp ---TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEE
T ss_pred ---cCcEEEEEccCCcEEEEecCCcceeccccceeccCceE
Confidence 2389999999975 777765444443334444555444
No 267
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=20.48 E-value=98 Score=16.69 Aligned_cols=17 Identities=29% Similarity=0.163 Sum_probs=10.7
Q ss_pred eEEEEeCCEEEEEecCc
Q 040145 341 FAVNACDCRVYVVGRNL 357 (402)
Q Consensus 341 ~~~~~~~~~i~v~GG~~ 357 (402)
-.+++.|+++..+||.+
T Consensus 7 ~K~~vvD~~~a~vGg~n 23 (28)
T PF00614_consen 7 QKFVVVDDRVAFVGGAN 23 (28)
T ss_dssp --EEEETTTEEEEE---
T ss_pred eEEEEEcCCEEEECcee
Confidence 36778899999999954
No 268
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=20.45 E-value=6.3e+02 Score=22.64 Aligned_cols=36 Identities=11% Similarity=0.187 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCC
Q 040145 205 GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGT 242 (402)
Q Consensus 205 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~ 242 (402)
+.+++++||+.......+ ...+.....|+.+.+.|.
T Consensus 158 ~h~LLlVgG~~~~~~~~s--~a~~~GLtaWRiL~~~Py 193 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMS--KASSCGLTAWRILSDSPY 193 (282)
T ss_pred CCCEEEEeccCCCCCccc--cccccCceEEEEcCCCCc
Confidence 357888999854432111 123344556888866654
No 269
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=20.42 E-value=7.2e+02 Score=23.34 Aligned_cols=154 Identities=15% Similarity=0.108 Sum_probs=86.3
Q ss_pred ceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEE--ECCEEEEEcCCCCCCCCCCeeE
Q 040145 148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGV--IGGMIYVAGGSSADLFELDSAE 225 (402)
Q Consensus 148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~ 225 (402)
.+.++...+.++|+..+. .+.+.++|..+++-.. ..+..+..+..++ .++.+|+.-... ..+.+.
T Consensus 77 ~~i~v~~~~~~vyv~~~~-------~~~v~vid~~~~~~~~--~~~vG~~P~~~~~~~~~~~vYV~n~~~----~~~~vs 143 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGD-------SNTVSVIDTATNTVLG--SIPVGLGPVGLAVDPDGKYVYVANAGN----GNNTVS 143 (381)
T ss_pred cceeeCCCCCeEEEecCC-------CCeEEEEcCcccceee--EeeeccCCceEEECCCCCEEEEEeccc----CCceEE
Confidence 344444447789998764 5589999966655322 2333334344443 366899986532 157889
Q ss_pred EEcCCCCcEEEc---CCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccc---cccCCCceeE--
Q 040145 226 VLDPVKGNWRTI---ASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV---GLREGWTGSS-- 297 (402)
Q Consensus 226 ~yd~~t~~W~~~---~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~---~~~~~~~~~~-- 297 (402)
++|..+++-... ...| .......-+.++|+.-. ..+.+..+|+.+..-.+ .. ..+.......
T Consensus 144 vid~~t~~~~~~~~vG~~P---~~~a~~p~g~~vyv~~~------~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~ 213 (381)
T COG3391 144 VIDAATNKVTATIPVGNTP---TGVAVDPDGNKVYVTNS------DDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIA 213 (381)
T ss_pred EEeCCCCeEEEEEecCCCc---ceEEECCCCCeEEEEec------CCCeEEEEeCCCcceec-cccccccccCCCCceEE
Confidence 999998874333 2222 11112222556888762 23578899987764332 21 1122111112
Q ss_pred EEE-CCEEEEEeccC-CcEEEEEeCCCCc
Q 040145 298 VVV-YEHLFVVSELE-RMKLKVYDPSTDS 324 (402)
Q Consensus 298 ~~~-~~~l~~~gg~~-~~~~~~yd~~~~~ 324 (402)
+.- +.++|+.-..+ ...+..+|..++.
T Consensus 214 v~~~g~~~yV~~~~~~~~~v~~id~~~~~ 242 (381)
T COG3391 214 VDPDGNRVYVANDGSGSNNVLKIDTATGN 242 (381)
T ss_pred ECCCCCEEEEEeccCCCceEEEEeCCCce
Confidence 222 45588775542 2578888888864
No 270
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=20.25 E-value=2.7e+02 Score=31.39 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=30.4
Q ss_pred ECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEec
Q 040145 252 LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSE 309 (402)
Q Consensus 252 ~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg 309 (402)
-+|++|..|... .+-.|.. .+.|-++.. +.+....++.+++-++..|.
T Consensus 496 ~sGKvYYaGn~t-------~~Gl~e~-G~nWmEL~l--~~~IVq~SVG~D~~~~~~~A 543 (3738)
T KOG1428|consen 496 RSGKVYYAGNGT-------RFGLFET-GNNWMELCL--PEPIVQISVGIDTIMFRSGA 543 (3738)
T ss_pred cCccEEEecCcc-------EEeEEcc-CCceEEecC--CCceEEEEeccchhheeecc
Confidence 389999988642 3444443 378998874 45555555667777666543
No 271
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=20.05 E-value=2.6e+02 Score=18.00 Aligned_cols=31 Identities=10% Similarity=0.203 Sum_probs=18.5
Q ss_pred EEccCCEEEEEeCccCCCCCCCceEEEEECC
Q 040145 152 SIPREGTLFVCGGMVSDVDCPLDLVLKYEMQ 182 (402)
Q Consensus 152 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~ 182 (402)
++..+++|++.|............+.+||+.
T Consensus 7 ~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~D 37 (55)
T TIGR02608 7 AVQSDGKILVAGYVDNSSGNNDFVLARLNAD 37 (55)
T ss_pred EECCCCcEEEEEEeecCCCcccEEEEEECCC
Confidence 3335899999986532222334456777764
No 272
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=20.03 E-value=7.9e+02 Score=23.69 Aligned_cols=51 Identities=10% Similarity=0.160 Sum_probs=28.4
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEE---EEE-CCEEEEEcCCCC
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFAS---GVI-GGMIYVAGGSSA 216 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~---~~~-~~~iyv~GG~~~ 216 (402)
+..-|+++|. ....+|+|...|+.--.. + . +++... ... ++..++.||.++
T Consensus 91 n~G~~l~ag~------i~g~lYlWelssG~LL~v--~-~-aHYQ~ITcL~fs~dgs~iiTgskDg 145 (476)
T KOG0646|consen 91 NLGYFLLAGT------ISGNLYLWELSSGILLNV--L-S-AHYQSITCLKFSDDGSHIITGSKDG 145 (476)
T ss_pred CCceEEEeec------ccCcEEEEEeccccHHHH--H-H-hhccceeEEEEeCCCcEEEecCCCc
Confidence 5566777763 234799999888752111 1 1 222222 222 567777787644
Done!