Query 040145
Match_columns 402
No_of_seqs 255 out of 2798
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 08:29:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040145.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040145hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xn4_A Kelch-like protein 2; s 100.0 4.2E-43 1.4E-47 319.1 32.7 264 103-385 14-284 (302)
2 3ii7_A Kelch-like protein 7; p 100.0 1.5E-42 5.3E-47 316.0 34.5 261 104-385 11-280 (306)
3 1zgk_A Kelch-like ECH-associat 100.0 1.5E-42 5.2E-47 316.3 32.4 268 100-385 20-295 (308)
4 4asc_A Kelch repeat and BTB do 100.0 2.6E-42 8.8E-47 315.8 32.7 277 104-401 4-302 (315)
5 2vpj_A Kelch-like protein 12; 100.0 5.7E-41 1.9E-45 304.9 32.3 263 103-385 13-286 (301)
6 2woz_A Kelch repeat and BTB do 100.0 1.1E-40 3.8E-45 305.4 29.8 277 104-401 15-312 (318)
7 2uvk_A YJHT; unknown function, 100.0 2.4E-38 8.1E-43 294.6 27.9 265 103-385 18-350 (357)
8 4asc_A Kelch repeat and BTB do 100.0 5.5E-39 1.9E-43 293.7 20.7 269 71-355 13-305 (315)
9 2woz_A Kelch repeat and BTB do 100.0 1.9E-38 6.6E-43 290.5 19.8 268 73-354 26-314 (318)
10 2xn4_A Kelch-like protein 2; s 100.0 1E-37 3.4E-42 283.6 23.2 262 72-350 31-302 (302)
11 3ii7_A Kelch-like protein 7; p 100.0 1.3E-37 4.4E-42 283.5 22.2 260 71-346 24-293 (306)
12 1zgk_A Kelch-like ECH-associat 100.0 2.4E-37 8.2E-42 281.9 23.2 258 70-345 38-307 (308)
13 2vpj_A Kelch-like protein 12; 100.0 1.3E-36 4.3E-41 276.2 21.5 258 71-346 31-299 (301)
14 2uvk_A YJHT; unknown function, 100.0 4E-35 1.4E-39 272.9 26.8 250 133-401 2-321 (357)
15 2zwa_A Leucine carboxyl methyl 100.0 3.3E-34 1.1E-38 287.6 23.8 259 103-369 396-692 (695)
16 2zwa_A Leucine carboxyl methyl 100.0 1.8E-32 6.3E-37 274.9 23.9 223 148-386 390-644 (695)
17 1k3i_A Galactose oxidase precu 100.0 3.1E-33 1.1E-37 280.2 16.9 307 73-401 168-526 (656)
18 1k3i_A Galactose oxidase precu 100.0 1.8E-29 6.3E-34 252.8 17.6 263 121-401 168-471 (656)
19 2ovr_B FBW7, F-BOX/WD repeat p 99.0 4.5E-07 1.5E-11 85.9 27.0 270 50-359 16-340 (445)
20 3v7d_B Cell division control p 99.0 2.8E-07 9.4E-12 87.7 25.2 39 51-89 13-51 (464)
21 1p22_A F-BOX/WD-repeat protein 98.9 2.9E-07 9.8E-12 87.0 24.4 266 52-359 10-357 (435)
22 3mbr_X Glutamine cyclotransfer 98.6 6.2E-06 2.1E-10 70.4 20.4 192 146-358 20-226 (243)
23 3dsm_A Uncharacterized protein 98.6 5.8E-05 2E-09 68.3 27.7 233 103-370 52-301 (328)
24 3dsm_A Uncharacterized protein 98.6 6.1E-05 2.1E-09 68.2 27.0 218 117-372 15-254 (328)
25 1fs1_A SKP2 F-BOX, cyclin A/CD 98.6 6.3E-08 2.2E-12 62.0 4.4 43 50-93 6-48 (53)
26 3nol_A Glutamine cyclotransfer 98.5 2.8E-05 9.6E-10 67.0 20.3 193 146-359 42-248 (262)
27 3nok_A Glutaminyl cyclase; bet 98.4 7E-05 2.4E-09 64.5 20.0 188 146-357 54-256 (268)
28 3q7m_A Lipoprotein YFGL, BAMB; 98.2 0.0027 9.3E-08 58.2 29.3 231 103-383 52-304 (376)
29 2iwa_A Glutamine cyclotransfer 98.2 0.00095 3.2E-08 58.0 24.2 183 156-359 31-229 (266)
30 3q7m_A Lipoprotein YFGL, BAMB; 98.2 0.0033 1.1E-07 57.6 29.7 224 103-383 102-345 (376)
31 2e31_A FBS1, F-box only protei 98.2 1.1E-06 3.7E-11 77.1 4.8 49 50-99 48-97 (297)
32 1rwi_B Serine/threonine-protei 98.0 0.0019 6.3E-08 56.0 22.5 225 104-371 34-264 (270)
33 2z2n_A Virginiamycin B lyase; 98.0 0.0056 1.9E-07 53.6 25.9 224 104-371 67-295 (299)
34 1q7f_A NHL, brain tumor CG1071 98.0 0.0063 2.1E-07 53.2 26.2 223 104-355 40-269 (286)
35 1l0q_A Surface layer protein; 97.9 0.0012 4E-08 60.8 19.9 220 104-369 43-273 (391)
36 2z2n_A Virginiamycin B lyase; 97.9 0.01 3.5E-07 51.9 26.0 222 104-369 25-253 (299)
37 3mbr_X Glutamine cyclotransfer 97.9 0.0032 1.1E-07 53.7 20.2 166 197-385 22-190 (243)
38 2qc5_A Streptogramin B lactona 97.9 0.011 3.7E-07 51.7 26.7 223 104-369 30-258 (300)
39 3vgz_A Uncharacterized protein 97.9 0.014 4.8E-07 52.4 26.1 232 104-371 52-303 (353)
40 4ery_A WD repeat-containing pr 97.8 0.011 3.8E-07 52.3 24.1 209 121-359 47-260 (312)
41 2qc5_A Streptogramin B lactona 97.8 0.016 5.4E-07 50.6 25.1 220 104-369 72-298 (300)
42 3jrp_A Fusion protein of prote 97.8 0.0043 1.5E-07 56.3 21.0 233 105-368 23-286 (379)
43 1l0q_A Surface layer protein; 97.7 0.0021 7.2E-08 59.0 18.7 184 106-327 3-194 (391)
44 1rwi_B Serine/threonine-protei 97.7 0.0081 2.8E-07 51.8 20.5 190 150-371 28-222 (270)
45 2hqs_A Protein TOLB; TOLB, PAL 97.7 0.016 5.3E-07 54.0 23.4 220 119-370 159-386 (415)
46 3nol_A Glutamine cyclotransfer 97.6 0.0066 2.3E-07 52.2 18.0 163 199-384 46-211 (262)
47 3ow8_A WD repeat-containing pr 97.6 0.01 3.6E-07 53.0 20.4 183 149-359 84-271 (321)
48 3v7d_B Cell division control p 97.6 0.043 1.5E-06 51.4 25.6 183 156-366 279-462 (464)
49 3no2_A Uncharacterized protein 97.6 0.019 6.4E-07 50.2 21.2 241 104-389 4-265 (276)
50 1gxr_A ESG1, transducin-like e 97.5 0.019 6.7E-07 50.9 21.3 183 148-358 100-287 (337)
51 3bws_A Protein LP49; two-domai 97.5 0.0086 2.9E-07 55.7 19.3 212 120-369 102-332 (433)
52 2ovr_B FBW7, F-BOX/WD repeat p 97.5 0.021 7E-07 53.5 21.5 189 156-368 248-439 (445)
53 1gxr_A ESG1, transducin-like e 97.5 0.011 3.8E-07 52.5 18.6 205 120-359 120-329 (337)
54 2ojh_A Uncharacterized protein 97.5 0.046 1.6E-06 47.2 23.4 227 116-372 19-259 (297)
55 3bws_A Protein LP49; two-domai 97.4 0.0081 2.8E-07 55.9 18.2 197 104-325 133-337 (433)
56 1q7f_A NHL, brain tumor CG1071 97.4 0.051 1.7E-06 47.2 22.1 192 151-370 35-237 (286)
57 3nok_A Glutaminyl cyclase; bet 97.4 0.017 5.9E-07 49.7 17.8 161 199-384 58-220 (268)
58 1k8k_C P40, ARP2/3 complex 41 97.4 0.019 6.5E-07 51.8 19.4 193 104-324 19-235 (372)
59 1ri6_A Putative isomerase YBHE 97.4 0.029 9.8E-07 50.0 20.2 234 104-372 49-311 (343)
60 1r5m_A SIR4-interacting protei 97.3 0.052 1.8E-06 49.8 22.2 203 121-358 132-352 (425)
61 3jro_A Fusion protein of prote 97.3 0.0075 2.6E-07 61.0 17.3 221 120-369 32-283 (753)
62 3vgz_A Uncharacterized protein 97.3 0.085 2.9E-06 47.1 23.3 197 156-372 52-263 (353)
63 2dg1_A DRP35, lactonase; beta 97.3 0.049 1.7E-06 48.5 21.1 199 151-369 50-261 (333)
64 3hfq_A Uncharacterized protein 97.3 0.0089 3E-07 53.8 16.1 190 116-328 15-226 (347)
65 3jrp_A Fusion protein of prote 97.3 0.042 1.4E-06 49.6 20.8 195 150-368 16-239 (379)
66 3u4y_A Uncharacterized protein 97.3 0.02 6.8E-07 51.0 18.3 230 104-372 9-253 (331)
67 2vdu_B TRNA (guanine-N(7)-)-me 97.3 0.07 2.4E-06 50.0 22.7 201 149-372 153-394 (450)
68 2iwa_A Glutamine cyclotransfer 97.3 0.032 1.1E-06 48.3 18.4 164 199-384 24-191 (266)
69 3ow8_A WD repeat-containing pr 97.3 0.058 2E-06 48.1 21.0 203 120-359 103-313 (321)
70 1pjx_A Dfpase, DIISOPROPYLFLUO 97.2 0.03 1E-06 49.3 18.9 222 120-371 47-299 (314)
71 1k8k_C P40, ARP2/3 complex 41 97.2 0.059 2E-06 48.5 21.3 185 121-330 76-284 (372)
72 2hqs_A Protein TOLB; TOLB, PAL 97.2 0.054 1.8E-06 50.3 21.1 185 119-329 203-394 (415)
73 1p22_A F-BOX/WD-repeat protein 97.2 0.024 8.3E-07 52.9 18.8 179 152-359 138-317 (435)
74 4ery_A WD repeat-containing pr 97.2 0.023 7.9E-07 50.2 17.7 182 150-358 28-214 (312)
75 3g4e_A Regucalcin; six bladed 97.2 0.026 8.9E-07 49.7 17.5 216 104-356 24-262 (297)
76 3hfq_A Uncharacterized protein 97.2 0.021 7.1E-07 51.4 17.1 240 104-372 50-320 (347)
77 3fm0_A Protein CIAO1; WDR39,SG 97.2 0.072 2.4E-06 47.9 20.7 190 104-320 27-223 (345)
78 3fvz_A Peptidyl-glycine alpha- 97.2 0.12 4.2E-06 46.1 27.8 222 120-369 70-320 (329)
79 3v9f_A Two-component system se 97.1 0.081 2.8E-06 53.6 22.9 204 120-354 428-645 (781)
80 4g56_B MGC81050 protein; prote 97.1 0.029 1E-06 50.9 17.8 207 121-359 117-335 (357)
81 4h5i_A Guanine nucleotide-exch 97.1 0.047 1.6E-06 49.7 18.9 213 149-385 137-357 (365)
82 3vl1_A 26S proteasome regulato 97.1 0.075 2.6E-06 48.9 20.5 150 152-324 104-280 (420)
83 2dg1_A DRP35, lactonase; beta 97.1 0.12 4.1E-06 45.9 21.3 240 104-369 55-314 (333)
84 3dwl_C Actin-related protein 2 97.1 0.014 4.7E-07 53.1 15.2 225 104-358 22-273 (377)
85 2pm7_B Protein transport prote 97.1 0.12 4.2E-06 45.2 20.8 186 157-367 67-283 (297)
86 3vl1_A 26S proteasome regulato 97.0 0.19 6.5E-06 46.1 24.5 219 104-359 108-357 (420)
87 3e5z_A Putative gluconolactona 97.0 0.14 4.9E-06 44.6 21.8 224 105-372 40-287 (296)
88 3u4y_A Uncharacterized protein 97.0 0.065 2.2E-06 47.5 18.9 195 104-328 51-258 (331)
89 3e5z_A Putative gluconolactona 97.0 0.088 3E-06 46.0 19.4 189 156-371 39-246 (296)
90 3v9f_A Two-component system se 97.0 0.33 1.1E-05 49.1 25.3 219 121-372 335-569 (781)
91 1vyh_C Platelet-activating fac 96.9 0.14 4.7E-06 47.4 20.9 133 121-282 132-268 (410)
92 3no2_A Uncharacterized protein 96.9 0.12 4.2E-06 45.0 19.1 188 156-383 4-203 (276)
93 4gqb_B Methylosome protein 50; 96.9 0.034 1.2E-06 50.2 16.0 189 149-368 131-330 (344)
94 2bkl_A Prolyl endopeptidase; m 96.9 0.38 1.3E-05 47.8 25.0 212 104-328 131-357 (695)
95 1jmx_B Amine dehydrogenase; ox 96.9 0.2 6.8E-06 44.5 20.8 154 104-282 10-178 (349)
96 3bg1_A Protein SEC13 homolog; 96.9 0.043 1.5E-06 48.8 16.1 235 120-391 36-308 (316)
97 3scy_A Hypothetical bacterial 96.9 0.24 8.2E-06 44.5 21.8 238 104-372 61-340 (361)
98 3fm0_A Protein CIAO1; WDR39,SG 96.8 0.034 1.1E-06 50.2 15.4 187 150-359 21-217 (345)
99 3zwl_B Eukaryotic translation 96.8 0.2 6.8E-06 44.7 20.6 220 104-357 43-280 (369)
100 3scy_A Hypothetical bacterial 96.8 0.27 9.2E-06 44.2 22.2 193 117-329 27-249 (361)
101 4gga_A P55CDC, cell division c 96.8 0.31 1.1E-05 44.9 22.6 181 120-326 126-314 (420)
102 4aez_A CDC20, WD repeat-contai 96.8 0.21 7.1E-06 45.8 20.6 177 120-326 114-297 (401)
103 2xdw_A Prolyl endopeptidase; a 96.8 0.52 1.8E-05 47.0 25.2 250 104-372 135-415 (710)
104 1got_B GT-beta; complex (GTP-b 96.8 0.28 9.5E-06 43.8 24.1 207 120-359 78-293 (340)
105 1sq9_A Antiviral protein SKI8; 96.7 0.16 5.4E-06 46.2 19.4 147 158-324 82-269 (397)
106 3mkq_A Coatomer beta'-subunit; 96.7 0.11 3.8E-06 52.5 19.9 206 120-358 36-250 (814)
107 3dwl_C Actin-related protein 2 96.7 0.0076 2.6E-07 54.9 10.3 149 155-323 21-178 (377)
108 3zwl_B Eukaryotic translation 96.7 0.19 6.7E-06 44.8 19.6 219 120-368 97-345 (369)
109 3ei3_B DNA damage-binding prot 96.7 0.089 3E-06 47.8 17.4 142 158-322 87-236 (383)
110 1ijq_A LDL receptor, low-densi 96.7 0.3 1E-05 43.3 27.3 212 120-369 11-236 (316)
111 1ri6_A Putative isomerase YBHE 96.7 0.25 8.6E-06 43.6 20.0 140 174-326 60-215 (343)
112 2p4o_A Hypothetical protein; p 96.7 0.3 1E-05 43.0 24.0 220 104-356 42-278 (306)
113 1sq9_A Antiviral protein SKI8; 96.7 0.23 7.8E-06 45.1 20.0 109 205-324 197-324 (397)
114 1r5m_A SIR4-interacting protei 96.7 0.37 1.3E-05 43.9 22.3 154 148-324 111-280 (425)
115 1nir_A Nitrite reductase; hemo 96.6 0.11 3.9E-06 50.1 18.2 148 174-332 248-417 (543)
116 4a2l_A BT_4663, two-component 96.6 0.71 2.4E-05 46.7 25.9 215 121-372 379-615 (795)
117 2hes_X YDR267CP; beta-propelle 96.6 0.35 1.2E-05 43.0 20.9 215 121-359 36-272 (330)
118 1pgu_A Actin interacting prote 96.6 0.093 3.2E-06 50.9 17.8 190 148-359 119-320 (615)
119 1nir_A Nitrite reductase; hemo 96.6 0.55 1.9E-05 45.2 24.3 231 104-369 148-402 (543)
120 2fp8_A Strictosidine synthase; 96.6 0.36 1.2E-05 42.8 20.7 192 156-371 91-313 (322)
121 4a2l_A BT_4663, two-component 96.6 0.44 1.5E-05 48.3 23.0 205 120-355 428-649 (795)
122 3ott_A Two-component system se 96.6 0.26 8.8E-06 49.7 21.1 182 121-328 394-592 (758)
123 2pbi_B Guanine nucleotide-bind 96.6 0.27 9.2E-06 44.3 19.4 181 150-359 159-349 (354)
124 2aq5_A Coronin-1A; WD40 repeat 96.6 0.17 5.8E-06 46.4 18.4 159 149-324 135-301 (402)
125 4g56_B MGC81050 protein; prote 96.6 0.21 7.2E-06 45.1 18.7 153 149-324 98-260 (357)
126 2ghs_A AGR_C_1268P; regucalcin 96.6 0.2 6.8E-06 44.7 18.2 215 104-356 60-292 (326)
127 2xbg_A YCF48-like protein; pho 96.5 0.4 1.4E-05 42.8 24.0 236 104-385 46-287 (327)
128 1got_B GT-beta; complex (GTP-b 96.5 0.25 8.5E-06 44.2 18.8 180 151-359 61-249 (340)
129 2ojh_A Uncharacterized protein 96.5 0.13 4.5E-06 44.2 16.6 185 120-329 63-265 (297)
130 3jro_A Fusion protein of prote 96.5 0.087 3E-06 53.1 17.2 183 155-359 19-230 (753)
131 3fvz_A Peptidyl-glycine alpha- 96.5 0.44 1.5E-05 42.4 25.5 207 149-369 27-275 (329)
132 2hes_X YDR267CP; beta-propelle 96.5 0.18 6.1E-06 44.9 17.3 191 149-359 111-320 (330)
133 2pbi_B Guanine nucleotide-bind 96.5 0.39 1.3E-05 43.2 19.7 207 120-359 87-307 (354)
134 4aez_A CDC20, WD repeat-contai 96.4 0.12 4E-06 47.6 16.3 134 175-324 114-250 (401)
135 3g4e_A Regucalcin; six bladed 96.4 0.23 7.9E-06 43.5 17.6 189 156-371 24-229 (297)
136 1npe_A Nidogen, entactin; glyc 96.4 0.39 1.3E-05 41.2 23.0 191 149-371 40-238 (267)
137 2pm7_B Protein transport prote 96.4 0.44 1.5E-05 41.6 21.2 112 150-280 14-133 (297)
138 3l2o_B F-box only protein 4; s 96.4 0.0021 7.2E-08 55.8 3.7 44 53-97 5-48 (312)
139 1vyh_C Platelet-activating fac 96.4 0.21 7.3E-06 46.1 17.7 153 150-326 113-269 (410)
140 2z3z_A Dipeptidyl aminopeptida 96.4 0.3 1E-05 48.5 20.0 185 173-369 234-433 (706)
141 1pjx_A Dfpase, DIISOPROPYLFLUO 96.3 0.34 1.2E-05 42.4 18.3 201 155-370 27-255 (314)
142 4e54_B DNA damage-binding prot 96.3 0.04 1.4E-06 51.4 12.6 146 156-324 131-284 (435)
143 1pby_B Quinohemoprotein amine 96.3 0.15 5.1E-06 45.0 15.9 141 120-282 12-166 (337)
144 3azo_A Aminopeptidase; POP fam 96.3 0.94 3.2E-05 44.5 23.6 239 118-372 101-370 (662)
145 3mmy_A MRNA export factor; mRN 96.3 0.24 8.3E-06 44.1 17.4 185 106-323 55-248 (368)
146 2ast_B S-phase kinase-associat 96.2 0.0026 8.9E-08 57.3 3.8 42 49-90 5-46 (336)
147 2pm9_A Protein WEB1, protein t 96.2 0.24 8.4E-06 45.2 17.4 220 119-369 45-292 (416)
148 1yfq_A Cell cycle arrest prote 96.2 0.47 1.6E-05 41.9 18.8 207 120-359 80-315 (342)
149 3mkq_A Coatomer beta'-subunit; 96.2 0.13 4.5E-06 52.0 16.7 182 150-358 18-208 (814)
150 2bkl_A Prolyl endopeptidase; m 96.2 1.1 3.9E-05 44.4 23.2 255 103-369 78-349 (695)
151 1kb0_A Quinohemoprotein alcoho 96.2 1.1 3.9E-05 44.4 25.2 119 103-237 76-207 (677)
152 2aq5_A Coronin-1A; WD40 repeat 96.2 0.43 1.5E-05 43.6 18.8 157 149-324 85-256 (402)
153 3azo_A Aminopeptidase; POP fam 96.2 0.5 1.7E-05 46.5 20.3 194 118-329 160-376 (662)
154 1yr2_A Prolyl oligopeptidase; 96.2 1.2 4.2E-05 44.5 25.0 249 104-372 173-442 (741)
155 2ynn_A Coatomer subunit beta'; 96.2 0.29 1E-05 42.9 16.8 173 120-326 78-263 (304)
156 3sfz_A APAF-1, apoptotic pepti 96.1 0.21 7.3E-06 53.2 18.5 205 120-359 1026-1241(1249)
157 1kb0_A Quinohemoprotein alcoho 96.1 1.2 4.1E-05 44.2 23.7 114 156-285 77-207 (677)
158 3i2n_A WD repeat-containing pr 96.1 0.33 1.1E-05 43.1 17.3 177 157-358 31-234 (357)
159 2ynn_A Coatomer subunit beta'; 96.1 0.62 2.1E-05 40.7 20.5 207 120-359 36-251 (304)
160 1qhu_A Protein (hemopexin); be 96.1 0.9 3.1E-05 42.5 21.1 197 156-394 158-406 (460)
161 3v65_B Low-density lipoprotein 96.1 0.81 2.8E-05 41.9 26.2 212 120-368 97-315 (386)
162 2pm9_A Protein WEB1, protein t 96.1 0.79 2.7E-05 41.7 21.9 189 157-368 126-336 (416)
163 3hrp_A Uncharacterized protein 96.1 0.9 3.1E-05 41.9 23.6 225 104-359 141-402 (409)
164 2xbg_A YCF48-like protein; pho 96.0 0.75 2.6E-05 40.9 23.0 215 128-386 24-244 (327)
165 2z3z_A Dipeptidyl aminopeptida 96.0 0.47 1.6E-05 47.1 19.2 145 221-371 234-391 (706)
166 1pgu_A Actin interacting prote 96.0 1 3.6E-05 43.4 21.3 189 148-359 67-275 (615)
167 4e54_B DNA damage-binding prot 95.9 0.2 7E-06 46.5 15.4 189 104-323 131-328 (435)
168 1erj_A Transcriptional repress 95.9 0.97 3.3E-05 41.2 21.5 214 120-367 146-387 (393)
169 4a11_B DNA excision repair pro 95.9 0.94 3.2E-05 40.9 19.9 215 120-368 123-364 (408)
170 3lrv_A PRE-mRNA-splicing facto 95.9 0.88 3E-05 40.5 22.2 237 104-374 47-297 (343)
171 3ei3_B DNA damage-binding prot 95.9 0.6 2E-05 42.2 18.0 186 106-323 87-283 (383)
172 1pby_B Quinohemoprotein amine 95.9 0.41 1.4E-05 42.1 16.6 117 104-235 45-167 (337)
173 3m0c_C LDL receptor, low-densi 95.9 1.8 6E-05 43.7 25.7 182 149-358 428-623 (791)
174 1yfq_A Cell cycle arrest prote 95.9 0.86 3E-05 40.1 21.2 151 150-322 61-225 (342)
175 1qks_A Cytochrome CD1 nitrite 95.8 1.5 5E-05 42.5 23.4 192 105-326 167-377 (567)
176 3iuj_A Prolyl endopeptidase; h 95.8 1.7 5.8E-05 43.2 23.2 248 104-372 139-406 (693)
177 3sfz_A APAF-1, apoptotic pepti 95.8 0.77 2.6E-05 48.9 20.9 206 120-358 638-862 (1249)
178 3k26_A Polycomb protein EED; W 95.8 0.34 1.2E-05 43.2 15.8 104 157-281 85-194 (366)
179 3mmy_A MRNA export factor; mRN 95.8 0.99 3.4E-05 40.0 20.4 203 120-357 109-336 (368)
180 4aow_A Guanine nucleotide-bind 95.7 0.95 3.3E-05 39.7 20.9 181 155-359 138-329 (340)
181 1n7d_A LDL receptor, low-densi 95.7 0.46 1.6E-05 47.4 17.5 212 120-369 387-612 (699)
182 3i2n_A WD repeat-containing pr 95.7 0.62 2.1E-05 41.3 17.1 190 104-323 30-244 (357)
183 3bg1_A Protein SEC13 homolog; 95.6 0.29 9.8E-06 43.3 14.4 116 150-284 18-142 (316)
184 1w6s_A Methanol dehydrogenase 95.6 1.8 6.2E-05 42.2 22.6 115 156-285 62-199 (599)
185 3v64_C Agrin; beta propeller, 95.6 1.2 4.2E-05 40.0 27.6 211 120-368 54-272 (349)
186 3c5m_A Oligogalacturonate lyas 95.5 0.78 2.7E-05 41.4 17.3 198 117-329 166-391 (396)
187 3odt_A Protein DOA1; ubiquitin 95.5 1.1 3.8E-05 38.7 19.6 173 120-324 40-216 (313)
188 2ecf_A Dipeptidyl peptidase IV 95.5 1.4 4.6E-05 44.0 20.3 138 223-368 264-412 (741)
189 3dr2_A Exported gluconolactona 95.5 1.2 4E-05 39.0 18.8 197 105-329 57-274 (305)
190 4a11_B DNA excision repair pro 95.5 0.23 7.7E-06 45.2 13.5 151 149-323 47-219 (408)
191 4aow_A Guanine nucleotide-bind 95.4 1.3 4.4E-05 38.9 21.1 153 149-324 90-248 (340)
192 3dm0_A Maltose-binding peripla 95.4 2.4 8.2E-05 41.9 21.6 152 149-324 434-594 (694)
193 2ad6_A Methanol dehydrogenase 95.4 2.2 7.4E-05 41.4 23.7 120 103-237 61-193 (571)
194 4gqb_B Methylosome protein 50; 95.3 0.94 3.2E-05 40.6 16.9 134 175-324 104-248 (344)
195 1erj_A Transcriptional repress 95.3 0.47 1.6E-05 43.3 15.2 152 149-323 127-288 (393)
196 3odt_A Protein DOA1; ubiquitin 95.3 1.3 4.3E-05 38.3 21.0 142 205-372 154-297 (313)
197 3hrp_A Uncharacterized protein 95.3 1.8 6.1E-05 39.9 19.6 191 150-368 135-351 (409)
198 1jmx_B Amine dehydrogenase; ox 95.3 0.25 8.4E-06 43.9 12.9 155 155-326 9-179 (349)
199 1yiq_A Quinohemoprotein alcoho 95.3 2.6 8.9E-05 41.8 24.8 113 156-284 70-199 (689)
200 4ggc_A P55CDC, cell division c 95.3 1.3 4.6E-05 38.3 22.6 182 120-327 46-235 (318)
201 2ad6_A Methanol dehydrogenase 95.2 2.4 8E-05 41.1 20.9 116 200-328 57-193 (571)
202 3p5b_L Low density lipoprotein 95.2 1.9 6.4E-05 39.7 25.0 203 120-355 93-308 (400)
203 2fp8_A Strictosidine synthase; 95.1 1.4 4.7E-05 38.9 17.0 200 104-323 91-314 (322)
204 1yiq_A Quinohemoprotein alcoho 95.0 3.1 0.00011 41.3 25.1 119 103-237 69-200 (689)
205 1qks_A Cytochrome CD1 nitrite 95.0 1.4 4.7E-05 42.7 17.8 144 221-370 319-476 (567)
206 3lrv_A PRE-mRNA-splicing facto 94.9 1.9 6.4E-05 38.3 22.4 151 156-327 138-299 (343)
207 3f3f_A Nucleoporin SEH1; struc 94.9 1.8 6E-05 37.8 19.8 189 149-359 15-241 (351)
208 2p1m_B Transport inhibitor res 94.9 0.012 3.9E-07 57.6 2.8 36 51-86 4-40 (594)
209 2vdu_B TRNA (guanine-N(7)-)-me 94.9 2.4 8.4E-05 39.2 19.9 156 149-325 106-274 (450)
210 2ymu_A WD-40 repeat protein; u 94.8 1.5 5.2E-05 41.9 17.8 180 149-359 389-572 (577)
211 3dr2_A Exported gluconolactona 94.8 1.9 6.5E-05 37.6 17.9 199 156-387 56-277 (305)
212 2ymu_A WD-40 repeat protein; u 94.8 3 0.0001 39.8 20.3 200 121-359 327-531 (577)
213 3pe7_A Oligogalacturonate lyas 94.8 2.1 7.3E-05 38.4 17.9 189 173-372 59-274 (388)
214 3k26_A Polycomb protein EED; W 94.8 2.1 7E-05 37.9 21.1 105 105-233 85-194 (366)
215 4gga_A P55CDC, cell division c 94.7 1.1 3.7E-05 41.2 16.0 134 175-323 126-262 (420)
216 3iz6_a 40S ribosomal protein R 94.7 1.9 6.7E-05 38.9 17.3 175 175-367 181-373 (380)
217 1npe_A Nidogen, entactin; glyc 94.7 1.8 6.2E-05 36.8 23.9 191 104-326 47-242 (267)
218 3c5m_A Oligogalacturonate lyas 94.6 1.6 5.5E-05 39.3 16.6 148 173-329 167-336 (396)
219 1kv9_A Type II quinohemoprotei 94.6 3.9 0.00013 40.4 23.0 113 156-284 66-194 (668)
220 3tc9_A Hypothetical hydrolase; 94.6 2.9 0.0001 38.8 22.5 224 104-358 149-421 (430)
221 2gop_A Trilobed protease; beta 94.5 2.3 7.9E-05 37.5 20.4 233 104-368 70-330 (347)
222 2ecf_A Dipeptidyl peptidase IV 94.4 4.4 0.00015 40.2 21.1 182 174-369 263-457 (741)
223 2p4o_A Hypothetical protein; p 94.3 2.5 8.6E-05 36.9 19.2 191 152-370 38-241 (306)
224 2hz6_A Endoplasmic reticulum t 94.2 0.048 1.6E-06 49.9 5.2 181 103-327 8-199 (369)
225 1kv9_A Type II quinohemoprotei 94.1 5 0.00017 39.6 31.7 118 103-236 65-194 (668)
226 3iz6_a 40S ribosomal protein R 94.0 3.4 0.00012 37.2 19.5 180 120-323 181-376 (380)
227 3pe7_A Oligogalacturonate lyas 93.9 1.1 3.6E-05 40.5 13.7 197 119-325 168-387 (388)
228 2xdw_A Prolyl endopeptidase; a 93.8 5.7 0.00019 39.4 24.6 256 103-369 82-366 (710)
229 2ghs_A AGR_C_1268P; regucalcin 93.7 3.4 0.00012 36.4 23.2 143 156-321 60-209 (326)
230 3o4h_A Acylamino-acid-releasin 93.5 3.6 0.00012 39.5 17.6 171 175-369 133-313 (582)
231 1w6s_A Methanol dehydrogenase 93.5 5.9 0.0002 38.5 19.5 118 199-329 56-200 (599)
232 2hz6_A Endoplasmic reticulum t 93.5 0.076 2.6E-06 48.5 5.1 139 156-327 9-156 (369)
233 3frx_A Guanine nucleotide-bind 93.4 3.7 0.00013 36.0 20.3 205 120-359 88-309 (319)
234 3frx_A Guanine nucleotide-bind 93.4 3.7 0.00013 35.9 18.5 149 149-324 69-229 (319)
235 3gre_A Serine/threonine-protei 93.1 2 6.9E-05 39.4 14.4 105 205-324 181-294 (437)
236 3b7f_A Glycosyl hydrolase, BNR 93.1 5 0.00017 36.5 20.9 143 175-329 32-215 (394)
237 3hxj_A Pyrrolo-quinoline quino 93.1 4.1 0.00014 35.5 17.1 197 104-355 107-313 (330)
238 2xyi_A Probable histone-bindin 93.0 4.6 0.00016 37.1 16.8 146 157-322 141-309 (430)
239 1flg_A Protein (quinoprotein e 92.9 7.1 0.00024 37.8 23.1 113 156-284 68-200 (582)
240 3dm0_A Maltose-binding peripla 92.8 8 0.00027 38.1 21.9 152 149-325 476-635 (694)
241 1xfd_A DIP, dipeptidyl aminope 92.8 5.2 0.00018 39.5 17.8 62 222-285 228-295 (723)
242 3hxj_A Pyrrolo-quinoline quino 92.8 4.6 0.00016 35.2 19.3 170 156-369 107-282 (330)
243 2qe8_A Uncharacterized protein 92.7 5.1 0.00018 35.5 21.1 237 104-357 27-311 (343)
244 3oyo_A Hemopexin fold protein 92.7 2.5 8.5E-05 35.3 12.8 140 155-322 12-198 (225)
245 1qhu_A Protein (hemopexin); be 92.5 6.7 0.00023 36.6 20.1 172 156-369 107-329 (460)
246 2xyi_A Probable histone-bindin 92.5 1.1 3.9E-05 41.3 11.8 143 159-322 196-353 (430)
247 2gop_A Trilobed protease; beta 92.3 5.5 0.00019 35.0 16.9 183 118-329 42-258 (347)
248 3f3f_A Nucleoporin SEH1; struc 92.0 5.7 0.00019 34.4 21.9 146 157-322 71-249 (351)
249 3ott_A Two-component system se 91.8 8 0.00027 38.7 17.9 142 152-322 478-626 (758)
250 1itv_A MMP9; adaptive molecula 91.8 4.4 0.00015 32.9 13.3 142 200-372 11-175 (195)
251 1pex_A Collagenase-3, MMP-13; 91.7 4.8 0.00017 33.0 19.0 146 147-324 25-194 (207)
252 3v65_B Low-density lipoprotein 91.6 7.8 0.00027 35.2 23.9 174 120-323 139-319 (386)
253 1yr2_A Prolyl oligopeptidase; 91.1 13 0.00045 37.0 23.8 253 104-369 118-393 (741)
254 4h5i_A Guanine nucleotide-exch 91.1 8.2 0.00028 34.5 19.2 177 120-323 158-344 (365)
255 3lp9_A LS-24; SEED albumin, pl 91.1 2.2 7.4E-05 35.7 10.7 141 155-323 14-202 (227)
256 3c75_H MADH, methylamine dehyd 91.0 9.6 0.00033 35.2 17.5 118 104-234 84-212 (426)
257 3ogk_B Coronatine-insensitive 91.0 0.094 3.2E-06 51.1 2.5 35 53-87 13-48 (592)
258 2xzm_R RACK1; ribosome, transl 91.0 7.8 0.00027 34.1 19.9 149 149-322 80-244 (343)
259 4a0p_A LRP6, LRP-6, low-densit 90.9 13 0.00043 36.4 26.8 200 120-355 16-225 (628)
260 1itv_A MMP9; adaptive molecula 90.9 5.6 0.00019 32.3 15.4 145 148-324 9-176 (195)
261 3vu4_A KMHSV2; beta-propeller 90.9 8.3 0.00029 34.3 21.4 180 156-367 70-269 (355)
262 1ijq_A LDL receptor, low-densi 90.7 8.2 0.00028 33.8 24.6 188 104-324 41-240 (316)
263 1flg_A Protein (quinoprotein e 90.6 13 0.00044 36.0 21.4 113 200-327 63-200 (582)
264 2xzm_R RACK1; ribosome, transl 90.5 8.7 0.0003 33.8 20.7 172 120-324 99-287 (343)
265 4hw6_A Hypothetical protein, I 90.4 11 0.00037 34.9 23.6 225 104-358 152-424 (433)
266 3p5b_L Low density lipoprotein 90.1 11 0.00038 34.4 19.6 159 175-356 93-266 (400)
267 3ju4_A Endo-N-acetylneuraminid 90.0 6.9 0.00024 35.4 13.0 122 189-310 277-406 (670)
268 3v64_C Agrin; beta propeller, 89.9 10 0.00036 33.8 25.4 187 103-323 83-276 (349)
269 1n7d_A LDL receptor, low-densi 89.7 8.4 0.00029 38.2 15.4 147 155-325 463-617 (699)
270 1nr0_A Actin interacting prote 88.9 17 0.0006 35.0 23.4 180 121-328 172-361 (611)
271 1jof_A Carboxy-CIS,CIS-muconat 88.8 12 0.00042 33.2 15.9 165 150-328 149-347 (365)
272 1nr0_A Actin interacting prote 88.7 18 0.00062 34.9 23.2 185 149-359 151-347 (611)
273 2oiz_A Aromatic amine dehydrog 88.6 13 0.00044 33.2 18.9 119 104-234 15-143 (361)
274 3gre_A Serine/threonine-protei 88.5 14 0.00049 33.5 16.7 148 156-324 181-361 (437)
275 3dw8_B Serine/threonine-protei 87.5 16 0.00056 33.1 18.7 103 205-322 188-315 (447)
276 3o4h_A Acylamino-acid-releasin 86.5 23 0.00079 33.8 18.9 141 173-327 89-232 (582)
277 3sjl_D Methylamine dehydrogena 86.5 19 0.00064 32.7 21.4 120 103-234 43-172 (386)
278 2ece_A 462AA long hypothetical 86.5 21 0.00071 33.2 21.9 124 101-233 22-175 (462)
279 3ei3_A DNA damage-binding prot 86.3 28 0.00097 36.7 17.4 181 174-370 807-1000(1158)
280 3m0c_C LDL receptor, low-densi 86.2 30 0.001 34.8 25.2 152 148-323 474-633 (791)
281 3c7x_A Matrix metalloproteinas 86.1 12 0.00042 30.3 13.6 144 148-324 8-177 (196)
282 3ba0_A Macrophage metalloelast 86.1 19 0.00065 32.4 17.2 149 147-327 182-355 (365)
283 4ggc_A P55CDC, cell division c 85.8 16 0.00053 31.2 17.8 135 175-324 46-183 (318)
284 1hxn_A Hemopexin, HPX; heme, b 85.7 14 0.00048 30.5 12.8 118 252-392 27-163 (219)
285 3c75_H MADH, methylamine dehyd 85.5 22 0.00077 32.7 16.7 79 101-186 126-212 (426)
286 2mad_H Methylamine dehydrogena 85.5 20 0.0007 32.2 25.4 117 104-234 32-159 (373)
287 2p9w_A MAL S 1 allergenic prot 84.8 20 0.0007 31.7 22.2 234 104-357 24-305 (334)
288 3vu4_A KMHSV2; beta-propeller 84.2 22 0.00074 31.5 26.0 182 104-323 70-272 (355)
289 1k32_A Tricorn protease; prote 84.1 15 0.00051 38.3 14.2 99 222-329 358-468 (1045)
290 1su3_A Interstitial collagenas 83.9 27 0.00094 32.4 17.2 144 148-326 265-436 (450)
291 2oaj_A Protein SNI1; WD40 repe 83.4 43 0.0015 34.3 18.5 152 149-326 21-186 (902)
292 3sjl_D Methylamine dehydrogena 83.4 26 0.00089 31.8 21.6 80 101-186 86-172 (386)
293 1pex_A Collagenase-3, MMP-13; 83.2 18 0.0006 29.6 14.8 104 249-370 29-144 (207)
294 3sov_A LRP-6, low-density lipo 82.7 24 0.00082 30.9 24.2 151 149-324 83-240 (318)
295 3sov_A LRP-6, low-density lipo 82.1 25 0.00087 30.7 24.7 181 155-369 45-236 (318)
296 1xfd_A DIP, dipeptidyl aminope 81.7 19 0.00066 35.3 13.5 104 175-285 38-149 (723)
297 3b7f_A Glycosyl hydrolase, BNR 81.6 30 0.001 31.2 26.3 247 104-386 67-381 (394)
298 3oyo_A Hemopexin fold protein 81.1 22 0.00077 29.4 14.3 106 148-278 62-197 (225)
299 3iuj_A Prolyl endopeptidase; h 79.7 49 0.0017 32.5 28.0 208 148-370 131-358 (693)
300 1hxn_A Hemopexin, HPX; heme, b 79.0 26 0.00088 28.9 15.5 144 147-322 19-197 (219)
301 1k32_A Tricorn protease; prote 78.8 65 0.0022 33.4 22.0 136 222-370 317-460 (1045)
302 1su3_A Interstitial collagenas 78.2 43 0.0015 31.0 15.1 142 200-372 267-433 (450)
303 3tc9_A Hypothetical hydrolase; 78.0 26 0.00088 32.3 12.1 135 205-358 149-292 (430)
304 2mad_H Methylamine dehydrogena 77.4 40 0.0014 30.2 24.4 70 253-324 278-352 (373)
305 4a0p_A LRP6, LRP-6, low-densit 76.0 60 0.0021 31.6 23.0 183 104-323 48-238 (628)
306 1z68_A Fibroblast activation p 75.4 64 0.0022 31.6 16.7 106 222-329 224-353 (719)
307 2ece_A 462AA long hypothetical 74.4 55 0.0019 30.4 16.4 70 205-281 95-175 (462)
308 4a5s_A Dipeptidyl peptidase 4 73.8 73 0.0025 31.5 20.0 141 222-369 228-398 (740)
309 1gen_A Gelatinase A; hydrolase 73.8 36 0.0012 28.0 15.7 139 200-369 35-200 (218)
310 3lp9_A LS-24; SEED albumin, pl 72.6 33 0.0011 28.4 10.2 101 155-280 71-202 (227)
311 1gen_A Gelatinase A; hydrolase 72.2 40 0.0014 27.7 16.1 146 148-324 33-204 (218)
312 4hvt_A Ritya.17583.B, post-pro 71.5 33 0.0011 34.1 11.5 143 221-370 268-429 (711)
313 3ba0_A Macrophage metalloelast 70.6 60 0.002 29.1 15.1 144 200-372 185-351 (365)
314 3dw8_B Serine/threonine-protei 68.6 66 0.0023 28.9 15.9 157 150-328 182-379 (447)
315 3sre_A PON1, serum paraoxonase 68.4 65 0.0022 28.7 16.1 188 120-321 84-297 (355)
316 2cn3_A Xyloglucanase, beta-1,4 66.4 1.1E+02 0.0037 30.4 28.8 238 121-372 47-338 (737)
317 2j04_A TAU60, YPL007P, hypothe 65.3 1E+02 0.0034 29.7 18.2 114 147-284 131-259 (588)
318 2xe4_A Oligopeptidase B; hydro 64.3 1.2E+02 0.004 30.2 24.9 198 104-320 185-398 (751)
319 4hw6_A Hypothetical protein, I 63.7 90 0.0031 28.6 12.9 135 206-359 153-296 (433)
320 2oit_A Nucleoporin 214KDA; NH2 58.8 88 0.003 28.5 11.4 60 254-322 162-223 (434)
321 3c7x_A Matrix metalloproteinas 57.8 72 0.0025 25.6 13.0 109 148-281 53-177 (196)
322 2oaj_A Protein SNI1; WD40 repe 57.8 1.7E+02 0.0057 29.8 17.6 147 157-326 69-246 (902)
323 1jof_A Carboxy-CIS,CIS-muconat 56.6 1E+02 0.0035 27.0 14.4 57 175-237 120-183 (365)
324 1z68_A Fibroblast activation p 54.2 1.6E+02 0.0056 28.6 15.9 195 120-325 225-446 (719)
325 2cn3_A Xyloglucanase, beta-1,4 53.4 1.8E+02 0.0061 28.8 24.7 230 128-385 10-291 (737)
326 3ju4_A Endo-N-acetylneuraminid 51.7 1.4E+02 0.0049 27.2 13.4 122 231-355 269-405 (670)
327 1ck7_A Protein (gelatinase A); 50.3 1.9E+02 0.0064 28.1 13.3 143 200-372 448-616 (631)
328 3s94_A LRP-6, low-density lipo 50.2 1.8E+02 0.0063 28.0 26.7 176 155-357 359-541 (619)
329 2j04_A TAU60, YPL007P, hypothe 50.1 1.8E+02 0.0062 27.9 20.6 189 148-368 88-296 (588)
330 4hvt_A Ritya.17583.B, post-pro 49.5 2E+02 0.007 28.3 14.1 148 174-330 269-437 (711)
331 4gq1_A NUP37; propeller, trans 48.3 1.5E+02 0.005 26.3 14.8 64 156-233 155-220 (393)
332 3kya_A Putative phosphatase; s 48.2 1.8E+02 0.0061 27.3 21.4 113 104-230 151-277 (496)
333 2oit_A Nucleoporin 214KDA; NH2 47.4 1.6E+02 0.0056 26.7 12.8 61 157-231 162-223 (434)
334 4a5s_A Dipeptidyl peptidase 4 47.2 2.2E+02 0.0074 28.0 14.7 76 155-239 26-109 (740)
335 1fwx_A Nitrous oxide reductase 46.1 2.1E+02 0.0072 27.5 13.2 199 156-369 101-361 (595)
336 2p9w_A MAL S 1 allergenic prot 45.0 1.6E+02 0.0056 25.9 21.7 212 156-386 24-278 (334)
337 1ck7_A Protein (gelatinase A); 44.5 60 0.002 31.6 7.7 104 249-370 449-565 (631)
338 3amr_A 3-phytase; beta-propell 42.2 1.9E+02 0.0064 25.8 14.2 92 222-321 99-209 (355)
339 3kya_A Putative phosphatase; s 41.7 2.3E+02 0.0077 26.6 12.9 106 205-321 151-277 (496)
340 3s94_A LRP-6, low-density lipo 41.1 2.5E+02 0.0087 27.0 25.0 181 148-356 43-232 (619)
341 2xe4_A Oligopeptidase B; hydro 40.1 2.8E+02 0.0097 27.3 21.7 148 173-329 294-465 (751)
342 3qhy_B Beta-lactamase inhibito 38.6 1.3E+02 0.0044 25.6 8.4 17 199-215 35-51 (282)
343 1sqj_A OXG-RCBH, oligoxylogluc 37.4 3.2E+02 0.011 27.2 27.4 194 121-330 39-277 (789)
344 3k6s_A Integrin alpha-X; cell 35.7 4E+02 0.014 27.9 12.7 168 198-369 336-539 (1095)
345 2j04_B YDR362CP, TAU91; beta p 34.2 2.2E+02 0.0074 26.8 9.9 147 157-324 225-388 (524)
346 2be1_A Serine/threonine-protei 33.0 59 0.002 28.8 5.3 58 221-283 19-80 (339)
347 4gq1_A NUP37; propeller, trans 31.1 2.4E+02 0.0083 24.8 9.4 103 207-324 102-220 (393)
348 1mda_H Methylamine dehydrogena 30.8 2.1E+02 0.0072 25.4 8.7 116 104-231 31-158 (368)
349 1fwx_A Nitrous oxide reductase 27.6 1.5E+02 0.005 28.6 7.3 94 174-279 254-361 (595)
350 2oiz_A Aromatic amine dehydrog 27.3 3.1E+02 0.011 23.9 20.0 70 253-329 265-341 (361)
351 3a0f_A Xyloglucanase; beta-pro 26.4 4.8E+02 0.016 25.8 20.3 206 129-364 529-760 (763)
352 2kwv_A RAD30 homolog B, DNA po 26.4 29 0.00099 20.3 1.3 21 49-69 17-37 (48)
353 2b4w_A Hypothetical protein, c 25.2 2.1E+02 0.0071 24.5 6.8 59 203-262 38-98 (315)
354 2be1_A Serine/threonine-protei 24.5 63 0.0022 28.6 3.9 56 271-326 21-80 (339)
355 1xip_A Nucleoporin NUP159; bet 24.5 3.8E+02 0.013 24.0 10.3 65 253-327 96-160 (388)
356 3sre_A PON1, serum paraoxonase 24.2 3.7E+02 0.013 23.7 19.3 191 155-354 59-284 (355)
357 4d9s_A UVB-resistance protein 23.5 4E+02 0.014 23.8 13.8 17 149-165 132-148 (406)
358 2b4w_A Hypothetical protein, c 23.4 3.5E+02 0.012 23.2 8.0 59 250-310 37-98 (315)
359 3ei3_A DNA damage-binding prot 22.3 7E+02 0.024 26.2 17.8 136 172-321 862-1000(1158)
360 2ydt_A EXO-1,5-alpha-L-arabino 21.5 2.7E+02 0.0094 24.7 7.6 53 301-357 287-344 (367)
361 3qqz_A Putative uncharacterize 20.0 3.8E+02 0.013 22.3 24.2 193 149-369 31-251 (255)
No 1
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=4.2e-43 Score=319.12 Aligned_cols=264 Identities=22% Similarity=0.410 Sum_probs=225.4
Q ss_pred CCCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECC
Q 040145 103 KDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQ 182 (402)
Q Consensus 103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~ 182 (402)
.++.||++||.......++++||+.+++|..++++|.++ ..++++++ +++||++||.... ...+++++||+.
T Consensus 14 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~--~~~lyv~GG~~~~--~~~~~~~~~d~~ 85 (302)
T 2xn4_A 14 LPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRR----CRAGMVYM--AGLVFAVGGFNGS--LRVRTVDSYDPV 85 (302)
T ss_dssp -CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCC----BSCEEEEE--TTEEEEESCBCSS--SBCCCEEEEETT
T ss_pred CCCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccc----ccceEEEE--CCEEEEEeCcCCC--ccccceEEECCC
Confidence 367899999976666678999999999999999888554 56666666 9999999998543 467899999999
Q ss_pred CCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEccc
Q 040145 183 KNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGW 262 (402)
Q Consensus 183 t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~ 262 (402)
+++|+.++++|.+|..|++++++++||++||.+.... .+++++||+.+++|+.++++|.+|..+++++++++||++||.
T Consensus 86 ~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 164 (302)
T 2xn4_A 86 KDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTG-LSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGY 164 (302)
T ss_dssp TTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCE-EEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCE
T ss_pred CCceeeCCCCCccccceEEEEECCEEEEEcCCCCCcc-CceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCC
Confidence 9999999999999999999999999999999876544 788999999999999999999999999999999999999998
Q ss_pred ccCC-ccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccC----CcEEEEEeCCCCceeecCCCCCCcc
Q 040145 263 LWPF-FVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELE----RMKLKVYDPSTDSWETIEGPPLPEQ 336 (402)
Q Consensus 263 ~~~~-~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~----~~~~~~yd~~~~~W~~~~~~~~p~~ 336 (402)
.... ...+.+++||+.+++|+.+++ ++.++.+++ ++++++||++||.+ .+++++||+++++|++++.++.+
T Consensus 165 ~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-- 241 (302)
T 2xn4_A 165 DVASRQCLSTVECYNATTNEWTYIAE-MSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-- 241 (302)
T ss_dssp ETTTTEECCCEEEEETTTTEEEEECC-CSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC--
T ss_pred CCCCCccccEEEEEeCCCCcEEECCC-CccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc--
Confidence 6543 346789999999999999986 556665555 78899999999975 46899999999999999854443
Q ss_pred ccCCeEEEEeCCEEEEEecCce-eeeEEEEecccccccCceeeeEEEEeC
Q 040145 337 ICKPFAVNACDCRVYVVGRNLH-VAVGHITRLSTSEKKWSFSVQWQVVDA 385 (402)
Q Consensus 337 ~~~~~~~~~~~~~i~v~GG~~~-~~~~~v~~~~~~~~~~~~~~~W~~~~~ 385 (402)
|..++++..+++|||+||.+. ....+++.||+..+ +|+.++.
T Consensus 242 -r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~------~W~~~~~ 284 (302)
T 2xn4_A 242 -RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD------KWTVVSS 284 (302)
T ss_dssp -CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT------EEEECSS
T ss_pred -cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC------eEEECCc
Confidence 667888899999999999653 34688999999887 8888763
No 2
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=1.5e-42 Score=316.01 Aligned_cols=261 Identities=23% Similarity=0.337 Sum_probs=223.4
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK 183 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t 183 (402)
.+.||++||... ..++++||+.+++|..++++|.++ ..++++++ ++.||++||.. ....+++++||+.+
T Consensus 11 ~~~l~~~GG~~~--~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~--~~~lyv~GG~~---~~~~~~~~~~d~~~ 79 (306)
T 3ii7_A 11 HDYRIALFGGSQ--PQSCRYFNPKDYSWTDIRCPFEKR----RDAACVFW--DNVVYILGGSQ---LFPIKRMDCYNVVK 79 (306)
T ss_dssp CCEEEEEECCSS--TTSEEEEETTTTEEEECCCCSCCC----BSCEEEEE--TTEEEEECCBS---SSBCCEEEEEETTT
T ss_pred cceEEEEeCCCC--CceEEEecCCCCCEecCCCCCccc----ceeEEEEE--CCEEEEEeCCC---CCCcceEEEEeCCC
Confidence 578999998654 667999999999999999988654 66777776 99999999986 35688999999999
Q ss_pred CceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccc
Q 040145 184 NRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWL 263 (402)
Q Consensus 184 ~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~ 263 (402)
++|+.++++|.+|..|++++++++||++||.+......+++++||+.+++|+.++++|.+|..+++++++++||++||..
T Consensus 80 ~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 159 (306)
T 3ii7_A 80 DSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSL 159 (306)
T ss_dssp TEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEE
T ss_pred CeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCC
Confidence 99999999999999999999999999999987444448899999999999999999999999999999999999999986
Q ss_pred cCCc---cCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccC----CcEEEEEeCCCCceeecCCCCCCc
Q 040145 264 WPFF---VSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELE----RMKLKVYDPSTDSWETIEGPPLPE 335 (402)
Q Consensus 264 ~~~~---~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~----~~~~~~yd~~~~~W~~~~~~~~p~ 335 (402)
.... ..+.+++||+.+++|+.+++ ++.++.+++ ++++++||++||.+ .+.+++||+++++|+.++.++.+
T Consensus 160 ~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~- 237 (306)
T 3ii7_A 160 GNNVSGRVLNSCEVYDPATETWTELCP-MIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK- 237 (306)
T ss_dssp SCTTTCEECCCEEEEETTTTEEEEECC-CSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCC-
T ss_pred CCCCcccccceEEEeCCCCCeEEECCC-ccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC-
Confidence 5433 26789999999999999986 666666555 78899999999975 36899999999999999854444
Q ss_pred cccCCeEEEEeCCEEEEEecCcee-eeEEEEecccccccCceeeeEEEEeC
Q 040145 336 QICKPFAVNACDCRVYVVGRNLHV-AVGHITRLSTSEKKWSFSVQWQVVDA 385 (402)
Q Consensus 336 ~~~~~~~~~~~~~~i~v~GG~~~~-~~~~v~~~~~~~~~~~~~~~W~~~~~ 385 (402)
|..++++..+++|||+||.+.. ...+++.||+..+ +|+.++.
T Consensus 238 --r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~------~W~~~~~ 280 (306)
T 3ii7_A 238 --GVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETD------KWVANSK 280 (306)
T ss_dssp --BSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTT------EEEEEEE
T ss_pred --ccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCC------eEEeCCC
Confidence 7778888999999999996533 5689999999888 6766544
No 3
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=1.5e-42 Score=316.28 Aligned_cols=268 Identities=18% Similarity=0.313 Sum_probs=226.0
Q ss_pred cCCCCCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccC--CCCCCCceEE
Q 040145 100 LGFKDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVS--DVDCPLDLVL 177 (402)
Q Consensus 100 ~~~~~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~--~~~~~~~~~~ 177 (402)
....++.||++||.......++++||+.+++|..++++|.++ ..++++++ ++.||++||... +.....++++
T Consensus 20 ~~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~ 93 (308)
T 1zgk_A 20 APKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPR----SGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALD 93 (308)
T ss_dssp -CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCC----BSCEEEEE--TTEEEEECCEEEETTEEEECCCEE
T ss_pred ccCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccc----ccceEEEE--CCEEEEECCCcCCCCCCeecceEE
Confidence 345688999999875555668999999999999999888554 56666666 999999999831 1123568999
Q ss_pred EEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEE
Q 040145 178 KYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLL 257 (402)
Q Consensus 178 ~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly 257 (402)
+||+.+++|+.++++|.+|..|++++++++||++||.+.... .+++++||+.+++|+.++++|.+|..+++++++++||
T Consensus 94 ~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iy 172 (308)
T 1zgk_A 94 CYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIH-HNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLY 172 (308)
T ss_dssp EEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEE-CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEE
T ss_pred EECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcc-cccEEEECCCCCeEeECCCCCccccceEEEEECCEEE
Confidence 999999999999999999999999999999999999865544 7889999999999999999999999999999999999
Q ss_pred EEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccC----CcEEEEEeCCCCceeecCCCC
Q 040145 258 VTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELE----RMKLKVYDPSTDSWETIEGPP 332 (402)
Q Consensus 258 ~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~----~~~~~~yd~~~~~W~~~~~~~ 332 (402)
++||..+... .+.+++||+.+++|+.+++ ++.++..++ ++++++||++||.+ .+++++||+++++|+++..++
T Consensus 173 v~GG~~~~~~-~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 250 (308)
T 1zgk_A 173 AVGGFDGTNR-LNSAECYYPERNEWRMITA-MNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMK 250 (308)
T ss_dssp EECCBCSSCB-CCCEEEEETTTTEEEECCC-CSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCS
T ss_pred EEeCCCCCCc-CceEEEEeCCCCeEeeCCC-CCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCC
Confidence 9999875543 6789999999999999986 555565555 78899999999975 468999999999999998544
Q ss_pred CCccccCCeEEEEeCCEEEEEecCce-eeeEEEEecccccccCceeeeEEEEeC
Q 040145 333 LPEQICKPFAVNACDCRVYVVGRNLH-VAVGHITRLSTSEKKWSFSVQWQVVDA 385 (402)
Q Consensus 333 ~p~~~~~~~~~~~~~~~i~v~GG~~~-~~~~~v~~~~~~~~~~~~~~~W~~~~~ 385 (402)
.+ |..++++..+++|||+||.+. ....+++.||+..+ +|++++.
T Consensus 251 ~~---r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~------~W~~~~~ 295 (308)
T 1zgk_A 251 HR---RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD------TWSEVTR 295 (308)
T ss_dssp SC---CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT------EEEEEEE
T ss_pred CC---ccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCC------EEeecCC
Confidence 44 677888899999999999663 34689999999888 7777654
No 4
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=2.6e-42 Score=315.84 Aligned_cols=277 Identities=18% Similarity=0.223 Sum_probs=225.0
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCcc----CCCCCCCceEEEE
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMV----SDVDCPLDLVLKY 179 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~----~~~~~~~~~~~~~ 179 (402)
++.||++|| .++++|||.+++|.. ++++.+. .+..+++++ .+++||++||.. .......+++++|
T Consensus 4 ~~~l~~~GG------~~~~~yd~~~~~W~~-~~~~~p~--~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 72 (315)
T 4asc_A 4 QDLIFMISE------EGAVAYDPAANECYC-ASLSSQV--PKNHVSLVT--KENQVFVAGGLFYNEDNKEDPMSAYFLQF 72 (315)
T ss_dssp EEEEEEEET------TEEEEEETTTTEEEE-EECCCCS--CSSEEEEEC--TTCCEEEEEEEEECSSCSSSCEEEEEEEE
T ss_pred ceEEEEEcC------CceEEECCCCCeEec-CCCCCCC--CccceEEEE--ECCEEEEEcCcccCCCCCccccccceEEe
Confidence 457888886 358999999999987 5565322 224344443 499999999973 1122335569999
Q ss_pred ECCCCceeecCCCcccccceEEEEECCEEEEEcCCC--CCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEE
Q 040145 180 EMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSS--ADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLL 257 (402)
Q Consensus 180 d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~--~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly 257 (402)
|+.+++|+.++++|.+|..|+++.++++||++||.+ ......+++++||+.+++|+.++++|.+|..+++++++++||
T Consensus 73 d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iy 152 (315)
T 4asc_A 73 DHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVY 152 (315)
T ss_dssp ETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEE
T ss_pred cCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEE
Confidence 999999999999999999999999999999999974 223347899999999999999999999999999999999999
Q ss_pred EEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccC----CcEEEEEeCCCCceeecCCCC
Q 040145 258 VTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELE----RMKLKVYDPSTDSWETIEGPP 332 (402)
Q Consensus 258 ~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~----~~~~~~yd~~~~~W~~~~~~~ 332 (402)
++||........+.+++||+.+++|+.+++ ++.++..++ ++++++||++||.+ .+.+++||+++++|++++.++
T Consensus 153 v~GG~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p 231 (315)
T 4asc_A 153 VIGGKGSDRKCLNKMCVYDPKKFEWKELAP-MQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFP 231 (315)
T ss_dssp EECCBCTTSCBCCCEEEEETTTTEEEECCC-CSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCS
T ss_pred EEeCCCCCCcccceEEEEeCCCCeEEECCC-CCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCC
Confidence 999986555667899999999999999986 666666555 78899999999976 358999999999999998544
Q ss_pred CCccccCCeEEEEeCCEEEEEecCce----------eeeEEEEecccccccCceeeeEEEEeC-CCCCCCccccceeEEe
Q 040145 333 LPEQICKPFAVNACDCRVYVVGRNLH----------VAVGHITRLSTSEKKWSFSVQWQVVDA-PDNFSDLTPSSSQVLF 401 (402)
Q Consensus 333 ~p~~~~~~~~~~~~~~~i~v~GG~~~----------~~~~~v~~~~~~~~~~~~~~~W~~~~~-~~~~~~~~~~~~~~~~ 401 (402)
.+ |..++++..+++|||+||... ...++++.||+..+ +|+++.+ |+..+++++.+.++++
T Consensus 232 ~~---r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~------~W~~~~~~~r~~~~~~~~~~~l~v 302 (315)
T 4asc_A 232 QE---RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK------KWEGVLREIAYAAGATFLPVRLNV 302 (315)
T ss_dssp SC---CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT------EEEEEESCSSCCSSCEEEEEEECG
T ss_pred Cc---ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCC------hhhhhccCCcCccceEEeCCEEEE
Confidence 44 777889999999999999753 45689999999888 7777754 7777777767666653
No 5
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=5.7e-41 Score=304.92 Aligned_cols=263 Identities=21% Similarity=0.342 Sum_probs=223.3
Q ss_pred CCCeEEEEEE-eC-CCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEE
Q 040145 103 KDPWLFVFAF-HK-CTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYE 180 (402)
Q Consensus 103 ~~~~l~~~gg-~~-~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d 180 (402)
.++.||++|| .. .....++++||+.+++|..++.+|.++ ..++++++ +++||++||..+ ....+++++||
T Consensus 13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~--~~~l~v~GG~~~--~~~~~~~~~~d 84 (301)
T 2vpj_A 13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKR----RYVASVSL--HDRIYVIGGYDG--RSRLSSVECLD 84 (301)
T ss_dssp CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCC----BSCEEEEE--TTEEEEECCBCS--SCBCCCEEEEE
T ss_pred CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhh----ccccEEEE--CCEEEEEcCCCC--CccCceEEEEE
Confidence 4778999998 43 234557899999999999999888544 56677766 999999999863 34678999999
Q ss_pred CCCCc---eeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEE
Q 040145 181 MQKNR---WTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLL 257 (402)
Q Consensus 181 ~~t~~---W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly 257 (402)
+.+++ |+.++++|.+|..|+++.++++||++||.+.... .+++++||+.+++|+.++++|.+|..+++++++++||
T Consensus 85 ~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~-~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iy 163 (301)
T 2vpj_A 85 YTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRR-HTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIY 163 (301)
T ss_dssp TTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCB-CCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEE
T ss_pred CCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcc-cceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEE
Confidence 99999 9999999999999999999999999999876554 7899999999999999999999999999999999999
Q ss_pred EEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccC----CcEEEEEeCCCCceeecCCCC
Q 040145 258 VTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELE----RMKLKVYDPSTDSWETIEGPP 332 (402)
Q Consensus 258 ~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~----~~~~~~yd~~~~~W~~~~~~~ 332 (402)
++||..+.. ..+.+++||+.+++|+.+++ ++.++..++ +.++++||++||.+ .+++++||+++++|++++.++
T Consensus 164 v~GG~~~~~-~~~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 241 (301)
T 2vpj_A 164 CLGGYDGLN-ILNSVEKYDPHTGHWTNVTP-MATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT 241 (301)
T ss_dssp EECCBCSSC-BCCCEEEEETTTTEEEEECC-CSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred EECCCCCCc-ccceEEEEeCCCCcEEeCCC-CCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence 999986543 46789999999999999976 555555555 78899999999976 468999999999999998544
Q ss_pred CCccccCCeEEEEeCCEEEEEecCce-eeeEEEEecccccccCceeeeEEEEeC
Q 040145 333 LPEQICKPFAVNACDCRVYVVGRNLH-VAVGHITRLSTSEKKWSFSVQWQVVDA 385 (402)
Q Consensus 333 ~p~~~~~~~~~~~~~~~i~v~GG~~~-~~~~~v~~~~~~~~~~~~~~~W~~~~~ 385 (402)
.+ |..++++..+++|||+||... ....+++.||+..+ +|+.++.
T Consensus 242 ~~---r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~------~W~~~~~ 286 (301)
T 2vpj_A 242 TP---RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID------SWEVVTS 286 (301)
T ss_dssp SC---CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT------EEEEEEE
T ss_pred Cc---ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC------eEEEcCC
Confidence 44 677888899999999999663 34589999999888 6777654
No 6
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=1.1e-40 Score=305.38 Aligned_cols=277 Identities=15% Similarity=0.263 Sum_probs=221.2
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCC--C--CCCCceEEEE
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSD--V--DCPLDLVLKY 179 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~--~--~~~~~~~~~~ 179 (402)
++.||++||. .+++|||.+++|... +++.+. .+..+++++ .++.||++||...+ . ....+++++|
T Consensus 15 ~~~i~~~GG~------~~~~yd~~~~~W~~~-~~~~~~--~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~~~ 83 (318)
T 2woz_A 15 KDLILLVNDT------AAVAYDPMENECYLT-ALAEQI--PRNHSSIVT--QQNQVYVVGGLYVDEENKDQPLQSYFFQL 83 (318)
T ss_dssp EEEEEEECSS------EEEEEETTTTEEEEE-EECTTS--CSSEEEEEC--SSSCEEEEESSCC-------CCCBEEEEE
T ss_pred cchhhhcccc------ceEEECCCCCceecc-cCCccC--CccceEEEE--ECCEEEEECCcccCccccCCCccccEEEE
Confidence 5688999863 378999999999883 444221 123333333 59999999996321 1 1234569999
Q ss_pred ECCCCceeecCCCcccccceEEEEECCEEEEEcCCCC-CCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEE
Q 040145 180 EMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSA-DLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLV 258 (402)
Q Consensus 180 d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~ 258 (402)
|+.+++|+.++++|.+|..|++++++++||++||... .....+++++||+.+++|+.++++|.+|..+++++++++||+
T Consensus 84 d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv 163 (318)
T 2woz_A 84 DNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYC 163 (318)
T ss_dssp ETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEE
T ss_pred eCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEE
Confidence 9999999999999999999999999999999999852 233378899999999999999999999999999999999999
Q ss_pred EcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccC----CcEEEEEeCCCCceeecCCCCC
Q 040145 259 TEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELE----RMKLKVYDPSTDSWETIEGPPL 333 (402)
Q Consensus 259 ~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~----~~~~~~yd~~~~~W~~~~~~~~ 333 (402)
+||........+.+++||+.+++|+.+++ ++.++..++ ++++++||++||.+ .+.+++||+++++|++++.+|.
T Consensus 164 ~GG~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~ 242 (318)
T 2woz_A 164 LGGKTDDKKCTNRVFIYNPKKGDWKDLAP-MKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQ 242 (318)
T ss_dssp ECCEESSSCBCCCEEEEETTTTEEEEECC-CSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSS
T ss_pred EcCCCCCCCccceEEEEcCCCCEEEECCC-CCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCC
Confidence 99986555567899999999999999986 555555554 78899999999975 3689999999999999985443
Q ss_pred CccccCCeEEEEeCCEEEEEecCce----------eeeEEEEecccccccCceeeeEEEE-eCCCCCCCccccceeEEe
Q 040145 334 PEQICKPFAVNACDCRVYVVGRNLH----------VAVGHITRLSTSEKKWSFSVQWQVV-DAPDNFSDLTPSSSQVLF 401 (402)
Q Consensus 334 p~~~~~~~~~~~~~~~i~v~GG~~~----------~~~~~v~~~~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~~ 401 (402)
+ |..++++..+++|||+||... ....+++.||+.++ +|+++ +.++..++++..+.++++
T Consensus 243 ~---r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~------~W~~~~~~~r~~~~~~~~~~~iyi 312 (318)
T 2woz_A 243 E---RSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK------EWAGMLKEIRYASGASCLATRLNL 312 (318)
T ss_dssp C---CBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT------EEEEEESCCGGGTTCEEEEEEEEG
T ss_pred c---ccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC------EehhhcccccccccceeeCCEEEE
Confidence 3 677889999999999999753 23689999999888 77776 446666666667666654
No 7
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=2.4e-38 Score=294.65 Aligned_cols=265 Identities=16% Similarity=0.193 Sum_probs=208.5
Q ss_pred CCCeEEEEEEeCCCCceeEEEeecC--CCcEEeCCCCC-CCCCCCCCCceEEEEccCCEEEEEeCc-c--CCCCCCCceE
Q 040145 103 KDPWLFVFAFHKCTGKIQWQVLDLT--HYCWHTIPAMP-CKDKVCPHGFRCVSIPREGTLFVCGGM-V--SDVDCPLDLV 176 (402)
Q Consensus 103 ~~~~l~~~gg~~~~~~~~~~~~d~~--~~~W~~l~~~~-~~~~~~~~~~~~~~~~~~~~i~v~GG~-~--~~~~~~~~~~ 176 (402)
.++.||++||.... ++++||+. +++|..++++| .++ ..++++++ +++||++||. . ......++++
T Consensus 18 ~~~~iyv~GG~~~~---~~~~~d~~~~~~~W~~~~~~p~~~R----~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v 88 (357)
T 2uvk_A 18 DNDTVYIGLGSAGT---AWYKLDTQAKDKKWTALAAFPGGPR----DQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDV 88 (357)
T ss_dssp ETTEEEEECGGGTT---CEEEEETTSSSCCEEECCCCTTCCC----BSCEEEEE--TTEEEEECCEEECTTSCEEECCCE
T ss_pred ECCEEEEEeCcCCC---eEEEEccccCCCCeeECCCCCCCcC----ccceEEEE--CCEEEEEcCCCCCCCccceeeccE
Confidence 48999999986543 68999998 48999999988 444 66777776 9999999998 3 1122457899
Q ss_pred EEEECCCCceeecCCCc-ccccceEEEEECCEEEEEcCCCCCC---------------------------------CCCC
Q 040145 177 LKYEMQKNRWTVMNKMI-TARSFFASGVIGGMIYVAGGSSADL---------------------------------FELD 222 (402)
Q Consensus 177 ~~~d~~t~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~---------------------------------~~~~ 222 (402)
++||+.+++|+.+++++ .+|..|++++++++||++||.+... ...+
T Consensus 89 ~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (357)
T 2uvk_A 89 HKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNK 168 (357)
T ss_dssp EEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCC
T ss_pred EEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcc
Confidence 99999999999999988 8899999999999999999985431 1258
Q ss_pred eeEEEcCCCCcEEEcCCCCCCCcc-eeEEEECCEEEEEcccccCCccCCcEEEEeC--CCCCeeecccc-ccCCCcee-E
Q 040145 223 SAEVLDPVKGNWRTIASMGTNMAS-YDAAVLDGKLLVTEGWLWPFFVSPRGQVYDP--STDNWESMAVG-LREGWTGS-S 297 (402)
Q Consensus 223 ~~~~yd~~t~~W~~~~~~~~~~~~-~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~--~~~~W~~~~~~-~~~~~~~~-~ 297 (402)
++++||+.+++|+.++++|.++.. +++++++++||++||........+.+++||+ .+++|+.++.. .+..+.++ +
T Consensus 169 ~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~ 248 (357)
T 2uvk_A 169 FLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFA 248 (357)
T ss_dssp EEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEE
T ss_pred cEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceE
Confidence 999999999999999999987655 8899999999999998765555678999986 89999999762 23334444 4
Q ss_pred EEECCEEEEEeccCC---------------------cEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecC
Q 040145 298 VVVYEHLFVVSELER---------------------MKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRN 356 (402)
Q Consensus 298 ~~~~~~l~~~gg~~~---------------------~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~ 356 (402)
++++++||++||... ..+++||+++++|++++.++.+ |..++++..+++|||+||.
T Consensus 249 ~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~---r~~~~~~~~~~~i~v~GG~ 325 (357)
T 2uvk_A 249 GISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG---RAYGVSLPWNNSLLIIGGE 325 (357)
T ss_dssp EEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSC---CBSSEEEEETTEEEEEEEE
T ss_pred EEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCC---cccceeEEeCCEEEEEeee
Confidence 788999999999531 4789999999999999854444 6668888999999999996
Q ss_pred ce--eeeEEEEecccccccCceeeeEEEEeC
Q 040145 357 LH--VAVGHITRLSTSEKKWSFSVQWQVVDA 385 (402)
Q Consensus 357 ~~--~~~~~v~~~~~~~~~~~~~~~W~~~~~ 385 (402)
+. ...++|+.|+...+ .|..+.+
T Consensus 326 ~~~~~~~~~v~~l~~~~~------~~~~~~~ 350 (357)
T 2uvk_A 326 TAGGKAVTDSVLITVKDN------KVTVQNL 350 (357)
T ss_dssp CGGGCEEEEEEEEEC-CC------SCEEEC-
T ss_pred CCCCCEeeeEEEEEEcCc------EeEeeec
Confidence 53 34689998887666 6666665
No 8
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=5.5e-39 Score=293.71 Aligned_cols=269 Identities=19% Similarity=0.257 Sum_probs=218.6
Q ss_pred chhhhhhhccHhHHHhhcCchHhHHHHhh--cCCCCCeEEEEEEe-----CC--CCceeEEEeecCCCcEEeCCCCCCCC
Q 040145 71 ESHAACRAVCKRWHLLLGNKERFFTRRKE--LGFKDPWLFVFAFH-----KC--TGKIQWQVLDLTHYCWHTIPAMPCKD 141 (402)
Q Consensus 71 ~~l~~~~~v~k~W~~l~~s~~~~~~~r~~--~~~~~~~l~~~gg~-----~~--~~~~~~~~~d~~~~~W~~l~~~~~~~ 141 (402)
+.+..+....++|.. ...| . +..|.. ....++.||++||. .. .....+++||+.+++|+.++++|.++
T Consensus 13 ~~~~~yd~~~~~W~~-~~~~-~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 89 (315)
T 4asc_A 13 EGAVAYDPAANECYC-ASLS-S-QVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPR 89 (315)
T ss_dssp TEEEEEETTTTEEEE-EECC-C-CSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCE
T ss_pred CceEEECCCCCeEec-CCCC-C-CCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcch
Confidence 345566777788875 3332 1 123333 44568999999984 11 12335899999999999999988554
Q ss_pred CCCCCCceEEEEccCCEEEEEeCccC-CCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCC
Q 040145 142 KVCPHGFRCVSIPREGTLFVCGGMVS-DVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFE 220 (402)
Q Consensus 142 ~~~~~~~~~~~~~~~~~i~v~GG~~~-~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~ 220 (402)
..++++++ +++||++||... .+....+++++||+.+++|+.++++|.+|..|+++.++++||++||.......
T Consensus 90 ----~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 163 (315)
T 4asc_A 90 ----CLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKC 163 (315)
T ss_dssp ----ESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCB
T ss_pred ----hceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcc
Confidence 66777776 999999999753 23457889999999999999999999999999999999999999998544444
Q ss_pred CCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EE
Q 040145 221 LDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VV 299 (402)
Q Consensus 221 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~ 299 (402)
.+++++||+.+++|+.++++|.+|..+++++++++||++||..+.. ..+.+++||+.+++|+.+++ ++.++.+++ ++
T Consensus 164 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~ 241 (315)
T 4asc_A 164 LNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTG-LTSSAEVYSITDNKWAPFEA-FPQERSSLSLVS 241 (315)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSS-EEEEEEEEETTTTEEEEECC-CSSCCBSCEEEE
T ss_pred cceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCC-ccceEEEEECCCCeEEECCC-CCCcccceeEEE
Confidence 8899999999999999999999999999999999999999986543 35689999999999999986 666666555 78
Q ss_pred ECCEEEEEeccC-------------CcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEec
Q 040145 300 VYEHLFVVSELE-------------RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGR 355 (402)
Q Consensus 300 ~~~~l~~~gg~~-------------~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG 355 (402)
++++||++||.+ .+++++||+++++|+++. +.| |..+++++.+++|||+..
T Consensus 242 ~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~---r~~~~~~~~~~~l~v~~~ 305 (315)
T 4asc_A 242 LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVL--REI---AYAAGATFLPVRLNVLRL 305 (315)
T ss_dssp ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEEE--SCS---SCCSSCEEEEEEECGGGS
T ss_pred ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhhc--cCC---cCccceEEeCCEEEEEEe
Confidence 899999999973 257999999999999994 566 677888899999999865
No 9
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=1.9e-38 Score=290.49 Aligned_cols=268 Identities=18% Similarity=0.272 Sum_probs=215.5
Q ss_pred hhhhhhccHhHHHhhcCchHhHHHHhhcCCCCCeEEEEEEeC----C---CCceeEEEeecCCCcEEeCCCCCCCCCCCC
Q 040145 73 HAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFAFHK----C---TGKIQWQVLDLTHYCWHTIPAMPCKDKVCP 145 (402)
Q Consensus 73 l~~~~~v~k~W~~l~~s~~~~~~~r~~~~~~~~~l~~~gg~~----~---~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~ 145 (402)
...+....++|.... .+.......+.+...++.||++||.. . .....+++||+.+++|..++++|.++
T Consensus 26 ~~~yd~~~~~W~~~~-~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r---- 100 (318)
T 2woz_A 26 AVAYDPMENECYLTA-LAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR---- 100 (318)
T ss_dssp EEEEETTTTEEEEEE-ECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB----
T ss_pred eEEECCCCCceeccc-CCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc----
Confidence 455667778887732 22011122233455789999999832 1 11234899999999999999988654
Q ss_pred CCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeE
Q 040145 146 HGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAE 225 (402)
Q Consensus 146 ~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 225 (402)
..++++++ +++||++||.........+++++||+.+++|+.++++|.+|..|++++++++||++||........++++
T Consensus 101 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 178 (318)
T 2woz_A 101 CLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVF 178 (318)
T ss_dssp CSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEE
T ss_pred cccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEE
Confidence 66777777 9999999998643445678999999999999999999999999999999999999999854444478999
Q ss_pred EEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEE
Q 040145 226 VLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHL 304 (402)
Q Consensus 226 ~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l 304 (402)
+||+.+++|+.++++|.+|..+++++++++||++||..... ..+.+++||+.+++|+.+++ +|.++..++ ++++++|
T Consensus 179 ~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~i 256 (318)
T 2woz_A 179 IYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDG-LSASVEAFDLKTNKWEVMTE-FPQERSSISLVSLAGSL 256 (318)
T ss_dssp EEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTE-EEEEEEEEETTTCCEEECCC-CSSCCBSCEEEEETTEE
T ss_pred EEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCC-ccceEEEEECCCCeEEECCC-CCCcccceEEEEECCEE
Confidence 99999999999999999999999999999999999986543 35689999999999999987 555565554 7889999
Q ss_pred EEEeccC-------------CcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEe
Q 040145 305 FVVSELE-------------RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVG 354 (402)
Q Consensus 305 ~~~gg~~-------------~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~G 354 (402)
|++||.+ .+++++||+++++|+++. +.+ |..+++++++++|||+.
T Consensus 257 ~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~---r~~~~~~~~~~~iyi~~ 314 (318)
T 2woz_A 257 YAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGML--KEI---RYASGASCLATRLNLFK 314 (318)
T ss_dssp EEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEEE--SCC---GGGTTCEEEEEEEEGGG
T ss_pred EEECCeeccCCCCceeccceeeeEEEEeCCCCEehhhc--ccc---cccccceeeCCEEEEEE
Confidence 9999964 368999999999999982 444 67778888999999874
No 10
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=283.63 Aligned_cols=262 Identities=24% Similarity=0.384 Sum_probs=213.2
Q ss_pred hhhhhhhccHhHHHhhcCchHhHHHHhh--cCCCCCeEEEEEEeCC-CCceeEEEeecCCCcEEeCCCCCCCCCCCCCCc
Q 040145 72 SHAACRAVCKRWHLLLGNKERFFTRRKE--LGFKDPWLFVFAFHKC-TGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGF 148 (402)
Q Consensus 72 ~l~~~~~v~k~W~~l~~s~~~~~~~r~~--~~~~~~~l~~~gg~~~-~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~ 148 (402)
++..+....++|..+...| ..|.. ....++.||++||... ....++++||+.+++|+.+++++.++ ..+
T Consensus 31 ~~~~~d~~~~~W~~~~~~p----~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~ 102 (302)
T 2xn4_A 31 SVECYDFKEERWHQVAELP----SRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRR----STL 102 (302)
T ss_dssp CEEEEETTTTEEEEECCCS----SCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCC----BSC
T ss_pred cEEEEcCcCCcEeEcccCC----cccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccc----cce
Confidence 3455666778898886555 23333 3345899999998643 34567899999999999999988554 667
Q ss_pred eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCC-CCCCeeEEE
Q 040145 149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADL-FELDSAEVL 227 (402)
Q Consensus 149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~y 227 (402)
+++++ +++||++||.... ...+++++||+.+++|+.++++|.+|..+++++++++||++||.+... ...+++++|
T Consensus 103 ~~~~~--~~~iyv~GG~~~~--~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~y 178 (302)
T 2xn4_A 103 GAAVL--NGLLYAVGGFDGS--TGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECY 178 (302)
T ss_dssp EEEEE--TTEEEEEEEECSS--CEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEE
T ss_pred EEEEE--CCEEEEEcCCCCC--ccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEE
Confidence 77776 9999999998543 467899999999999999999999999999999999999999985543 236789999
Q ss_pred cCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEE
Q 040145 228 DPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFV 306 (402)
Q Consensus 228 d~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~ 306 (402)
|+.+++|+.++++|.+|..+++++++++||++||..+. ...+.+++||+.+++|+.++. ++.++.++. +.++++||+
T Consensus 179 d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~~-~~~~r~~~~~~~~~~~i~v 256 (302)
T 2xn4_A 179 NATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGP-LVRKSVEVYDPTTNAWRQVAD-MNMCRRNAGVCAVNGLLYV 256 (302)
T ss_dssp ETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSS-SBCCCEEEEETTTTEEEEECC-CSSCCBSCEEEEETTEEEE
T ss_pred eCCCCcEEECCCCccccccccEEEECCEEEEECCCCCC-cccceEEEEeCCCCCEeeCCC-CCCccccCeEEEECCEEEE
Confidence 99999999999999999999999999999999998654 335789999999999999986 555555554 788999999
Q ss_pred EeccC----CcEEEEEeCCCCceeecC-CCCCCccccCCeEEEEeCCEE
Q 040145 307 VSELE----RMKLKVYDPSTDSWETIE-GPPLPEQICKPFAVNACDCRV 350 (402)
Q Consensus 307 ~gg~~----~~~~~~yd~~~~~W~~~~-~~~~p~~~~~~~~~~~~~~~i 350 (402)
+||.+ .+++++||+++++|+.++ .++.+ |..+++++++++|
T Consensus 257 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~---r~~~~~~~~~~~i 302 (302)
T 2xn4_A 257 VGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTG---RSYAGVTVIDKRL 302 (302)
T ss_dssp ECCBCSSSBCCCEEEEETTTTEEEECSSCCSSC---CBSCEEEEEEC--
T ss_pred ECCcCCCcccccEEEEcCCCCeEEECCcccCcc---cccceEEEecccC
Confidence 99975 357999999999999997 33333 7778888888775
No 11
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=283.47 Aligned_cols=260 Identities=17% Similarity=0.244 Sum_probs=213.4
Q ss_pred chhhhhhhccHhHHHhhcCchHhHHHHhh--cCCCCCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCc
Q 040145 71 ESHAACRAVCKRWHLLLGNKERFFTRRKE--LGFKDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGF 148 (402)
Q Consensus 71 ~~l~~~~~v~k~W~~l~~s~~~~~~~r~~--~~~~~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~ 148 (402)
.++..+....++|..+...| ..|.. ....++.||++||.......++++||+.+++|..++++|.++ ..+
T Consensus 24 ~~~~~~d~~~~~W~~~~~~p----~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~ 95 (306)
T 3ii7_A 24 QSCRYFNPKDYSWTDIRCPF----EKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPR----DSL 95 (306)
T ss_dssp TSEEEEETTTTEEEECCCCS----CCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCC----BSC
T ss_pred ceEEEecCCCCCEecCCCCC----cccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccc----cce
Confidence 34556677788899887655 23433 334688999999876555678999999999999999988554 667
Q ss_pred eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCC---CCeeE
Q 040145 149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFE---LDSAE 225 (402)
Q Consensus 149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~---~~~~~ 225 (402)
+++++ +++||++||.+. .....+++++||+.+++|+.++++|.+|..|+++.++++||++||.+..... .++++
T Consensus 96 ~~~~~--~~~iyv~GG~~~-~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 172 (306)
T 3ii7_A 96 AACAA--EGKIYTSGGSEV-GNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCE 172 (306)
T ss_dssp EEEEE--TTEEEEECCBBT-TBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEE
T ss_pred eEEEE--CCEEEEECCCCC-CCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEE
Confidence 77776 999999999852 2356789999999999999999999999999999999999999998654432 68899
Q ss_pred EEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEE
Q 040145 226 VLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHL 304 (402)
Q Consensus 226 ~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l 304 (402)
+||+.+++|+.++++|.+|..+++++++++||++||.... ...+.+++||+.+++|+.+++ ++.++.+++ ++++++|
T Consensus 173 ~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~-~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~i 250 (306)
T 3ii7_A 173 VYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGL-GGLDNVEYYDIKLNEWKMVSP-MPWKGVTVKCAAVGSIV 250 (306)
T ss_dssp EEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETT-EEBCCEEEEETTTTEEEECCC-CSCCBSCCEEEEETTEE
T ss_pred EeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCC-CCCceEEEeeCCCCcEEECCC-CCCCccceeEEEECCEE
Confidence 9999999999999999999999999999999999998654 335789999999999999986 555555554 7889999
Q ss_pred EEEeccC----CcEEEEEeCCCCceeecCCCCCCccccCCeEEEEe
Q 040145 305 FVVSELE----RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNAC 346 (402)
Q Consensus 305 ~~~gg~~----~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~ 346 (402)
|++||.+ .+++++||+++++|+.++.++.+ |..++++++
T Consensus 251 ~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~---r~~~~~~~~ 293 (306)
T 3ii7_A 251 YVLAGFQGVGRLGHILEYNTETDKWVANSKVRAF---PVTSCLICV 293 (306)
T ss_dssp EEEECBCSSSBCCEEEEEETTTTEEEEEEEEECC---SCTTCEEEE
T ss_pred EEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcccc---cceeEEEEE
Confidence 9999975 46899999999999999854443 555555543
No 12
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=2.4e-37 Score=281.90 Aligned_cols=258 Identities=19% Similarity=0.308 Sum_probs=213.1
Q ss_pred cchhhhhhhccHhHHHhhcCchHhHHHHhh--cCCCCCeEEEEEEeC-----CCCceeEEEeecCCCcEEeCCCCCCCCC
Q 040145 70 VESHAACRAVCKRWHLLLGNKERFFTRRKE--LGFKDPWLFVFAFHK-----CTGKIQWQVLDLTHYCWHTIPAMPCKDK 142 (402)
Q Consensus 70 ~~~l~~~~~v~k~W~~l~~s~~~~~~~r~~--~~~~~~~l~~~gg~~-----~~~~~~~~~~d~~~~~W~~l~~~~~~~~ 142 (402)
..++..+...+++|..+...| ..|.. ....++.||++||.. .....++++||+.+++|+.+++++.++
T Consensus 38 ~~~~~~~d~~~~~W~~~~~~p----~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r- 112 (308)
T 1zgk_A 38 LSYLEAYNPSNGTWLRLADLQ----VPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPR- 112 (308)
T ss_dssp CCCEEEEETTTTEEEECCCCS----SCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCC-
T ss_pred cceEEEEcCCCCeEeECCCCC----cccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCc-
Confidence 345667778888999886555 33333 334589999999862 223456899999999999999988554
Q ss_pred CCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCC
Q 040145 143 VCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELD 222 (402)
Q Consensus 143 ~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 222 (402)
..++++++ +++||++||.... ...+++++||+.+++|+.++++|.+|..+++++++++||++||.+.... .+
T Consensus 113 ---~~~~~~~~--~~~iyv~GG~~~~--~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~ 184 (308)
T 1zgk_A 113 ---NRIGVGVI--DGHIYAVGGSHGC--IHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNR-LN 184 (308)
T ss_dssp ---BTCEEEEE--TTEEEEECCEETT--EECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCB-CC
T ss_pred ---cccEEEEE--CCEEEEEcCCCCC--cccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCc-Cc
Confidence 66777776 9999999998643 3578999999999999999999999999999999999999999876655 78
Q ss_pred eeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEEC
Q 040145 223 SAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVY 301 (402)
Q Consensus 223 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~ 301 (402)
++++||+.+++|+.++++|.+|..+++++++++||++||..+.. ..+.+++||+.+++|+.+++ ++.++..++ ++++
T Consensus 185 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~ 262 (308)
T 1zgk_A 185 SAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQD-QLNSVERYDVETETWTFVAP-MKHRRSALGITVHQ 262 (308)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSS-BCCCEEEEETTTTEEEECCC-CSSCCBSCEEEEET
T ss_pred eEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCC-ccceEEEEeCCCCcEEECCC-CCCCccceEEEEEC
Confidence 99999999999999999999999999999999999999987543 36789999999999999986 566555555 7889
Q ss_pred CEEEEEeccC----CcEEEEEeCCCCceeecCCCCCCccccCCeEEEE
Q 040145 302 EHLFVVSELE----RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA 345 (402)
Q Consensus 302 ~~l~~~gg~~----~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~ 345 (402)
++||++||.+ .+++++||+++++|++++.++.+ |..+++++
T Consensus 263 ~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~---r~~~~~~~ 307 (308)
T 1zgk_A 263 GRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSG---RSGVGVAV 307 (308)
T ss_dssp TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSC---CBSCEEEE
T ss_pred CEEEEEcCcCCCcccceEEEEcCCCCEEeecCCCCCC---cccceeEe
Confidence 9999999975 46899999999999999854444 66666654
No 13
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=276.20 Aligned_cols=258 Identities=21% Similarity=0.346 Sum_probs=211.9
Q ss_pred chhhhhhhccHhHHHhhcCchHhHHHHhh--cCCCCCeEEEEEEeCC-CCceeEEEeecCCCc---EEeCCCCCCCCCCC
Q 040145 71 ESHAACRAVCKRWHLLLGNKERFFTRRKE--LGFKDPWLFVFAFHKC-TGKIQWQVLDLTHYC---WHTIPAMPCKDKVC 144 (402)
Q Consensus 71 ~~l~~~~~v~k~W~~l~~s~~~~~~~r~~--~~~~~~~l~~~gg~~~-~~~~~~~~~d~~~~~---W~~l~~~~~~~~~~ 144 (402)
..+..+....++|..+...| . .|.. ....++.||++||... ....++++||+.+++ |+.++++|.++
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p-~---~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r--- 103 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSIT-R---KRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRR--- 103 (301)
T ss_dssp CCEEEEETTTTEEEECCCCS-S---CCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCC---
T ss_pred eEEEEEcCCCCeEEeCCCCC-h---hhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCc---
Confidence 34556677788898887656 2 3333 3345889999998643 345679999999999 99999888554
Q ss_pred CCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCee
Q 040145 145 PHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSA 224 (402)
Q Consensus 145 ~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 224 (402)
..++++++ +++||++||.... ...+++++||+.+++|+.++++|.+|..|++++++++||++||.+.... .+++
T Consensus 104 -~~~~~~~~--~~~lyv~GG~~~~--~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~ 177 (301)
T 2vpj_A 104 -GLAGATTL--GDMIYVSGGFDGS--RRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNI-LNSV 177 (301)
T ss_dssp -BSCEEEEE--TTEEEEECCBCSS--CBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCB-CCCE
T ss_pred -cceeEEEE--CCEEEEEcccCCC--cccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcc-cceE
Confidence 66777776 9999999998643 4578999999999999999999999999999999999999999876554 7899
Q ss_pred EEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCE
Q 040145 225 EVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEH 303 (402)
Q Consensus 225 ~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~ 303 (402)
++||+.+++|+.++++|.+|..+++++++++||++||..+.. ..+.+++||+.+++|+.++. ++.++..++ +.++++
T Consensus 178 ~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~-~~~~v~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~ 255 (301)
T 2vpj_A 178 EKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTA-HLSSVEAYNIRTDSWTTVTS-MTTPRCYVGATVLRGR 255 (301)
T ss_dssp EEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSS-BCCCEEEEETTTTEEEEECC-CSSCCBSCEEEEETTE
T ss_pred EEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCc-ccceEEEEeCCCCcEEECCC-CCCcccceeEEEECCE
Confidence 999999999999999999999999999999999999987543 35789999999999999986 555555544 788999
Q ss_pred EEEEeccCC----cEEEEEeCCCCceeecCCCCCCccccCCeEEEEe
Q 040145 304 LFVVSELER----MKLKVYDPSTDSWETIEGPPLPEQICKPFAVNAC 346 (402)
Q Consensus 304 l~~~gg~~~----~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~ 346 (402)
||++||.+. +.+++||+++++|+.++. +|.. |..++++.+
T Consensus 256 i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~--~~~~-r~~~~~~~~ 299 (301)
T 2vpj_A 256 LYAIAGYDGNSLLSSIECYDPIIDSWEVVTS--MGTQ-RCDAGVCVL 299 (301)
T ss_dssp EEEECCBCSSSBEEEEEEEETTTTEEEEEEE--EEEE-EESCEEEEE
T ss_pred EEEEcCcCCCcccccEEEEcCCCCeEEEcCC--CCcc-cccceEEEe
Confidence 999999752 689999999999999984 4433 666666654
No 14
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=4e-35 Score=272.86 Aligned_cols=250 Identities=17% Similarity=0.206 Sum_probs=190.2
Q ss_pred eCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECC--CCceeecCCCc-ccccceEEEEECCEEE
Q 040145 133 TIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQ--KNRWTVMNKMI-TARSFFASGVIGGMIY 209 (402)
Q Consensus 133 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~--t~~W~~~~~~~-~~r~~~~~~~~~~~iy 209 (402)
.+++||.++ ..+.++++ +++||++||... +++++||+. +++|+.++++| .+|..|++++++++||
T Consensus 2 ~l~~lP~~r----~~~~~~~~--~~~iyv~GG~~~------~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~ly 69 (357)
T 2uvk_A 2 VLPETPVPF----KSGTGAID--NDTVYIGLGSAG------TAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLY 69 (357)
T ss_dssp CSCCCSSCC----CSCEEEEE--TTEEEEECGGGT------TCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEE
T ss_pred CCCCCCccc----cceEEEEE--CCEEEEEeCcCC------CeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEE
Confidence 467777544 55555555 999999999842 379999998 48999999999 8999999999999999
Q ss_pred EEcCC-C---CCCCCCCeeEEEcCCCCcEEEcCCCC-CCCcceeEEEECCEEEEEcccccCC------------------
Q 040145 210 VAGGS-S---ADLFELDSAEVLDPVKGNWRTIASMG-TNMASYDAAVLDGKLLVTEGWLWPF------------------ 266 (402)
Q Consensus 210 v~GG~-~---~~~~~~~~~~~yd~~t~~W~~~~~~~-~~~~~~~~~~~~g~ly~~gG~~~~~------------------ 266 (402)
++||. . ......+++++||+.+++|+.+++++ .+|..+++++++++||++||.....
T Consensus 70 v~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~ 149 (357)
T 2uvk_A 70 VFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAI 149 (357)
T ss_dssp EECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred EEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccch
Confidence 99998 2 22233788999999999999999988 8999999999999999999975321
Q ss_pred ---------------ccCCcEEEEeCCCCCeeeccccccCCCc-eeEEEECCEEEEEeccC-----CcEEEEEeC--CCC
Q 040145 267 ---------------FVSPRGQVYDPSTDNWESMAVGLREGWT-GSSVVVYEHLFVVSELE-----RMKLKVYDP--STD 323 (402)
Q Consensus 267 ---------------~~~~~~~~yd~~~~~W~~~~~~~~~~~~-~~~~~~~~~l~~~gg~~-----~~~~~~yd~--~~~ 323 (402)
...+.+++||+.+++|+.+++.+..++. ..+++++++||++||.. ...+++||+ +++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~ 229 (357)
T 2uvk_A 150 DKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNL 229 (357)
T ss_dssp HHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---C
T ss_pred hhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCC
Confidence 1357899999999999999763333444 34478899999999964 467888976 899
Q ss_pred ceeecCCCCCCccccCCeEEEEeCCEEEEEecCce------------------eeeEEEEecccccccCceeeeEEEE--
Q 040145 324 SWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLH------------------VAVGHITRLSTSEKKWSFSVQWQVV-- 383 (402)
Q Consensus 324 ~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~------------------~~~~~v~~~~~~~~~~~~~~~W~~~-- 383 (402)
+|+++..++.|.. +..++++..+++|||+||... ....++++||+..+ +|+++
T Consensus 230 ~W~~~~~~~~~~~-~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~------~W~~~~~ 302 (357)
T 2uvk_A 230 KWNKLAPVSSPDG-VAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG------KWDKSGE 302 (357)
T ss_dssp EEEECCCSSTTTC-CBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---------CEEEEE
T ss_pred cEEecCCCCCCcc-cccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCC------ceeeCCC
Confidence 9999986544432 556788999999999999542 12368999999877 55554
Q ss_pred -eCCCCCCCccccceeEEe
Q 040145 384 -DAPDNFSDLTPSSSQVLF 401 (402)
Q Consensus 384 -~~~~~~~~~~~~~~~~~~ 401 (402)
+.|+..+.++..+.++++
T Consensus 303 ~p~~r~~~~~~~~~~~i~v 321 (357)
T 2uvk_A 303 LSQGRAYGVSLPWNNSLLI 321 (357)
T ss_dssp CSSCCBSSEEEEETTEEEE
T ss_pred CCCCcccceeEEeCCEEEE
Confidence 445555555555555554
No 15
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=3.3e-34 Score=287.58 Aligned_cols=259 Identities=12% Similarity=0.141 Sum_probs=200.9
Q ss_pred CCCeEEEEEEeCCCCceeEEEeecCCCcEEeCC-CCCCC-CCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEE
Q 040145 103 KDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIP-AMPCK-DKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYE 180 (402)
Q Consensus 103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~-~~~~~-~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d 180 (402)
.++.||++||.......++++||+.+++|..++ +++.. .+..+..++++++..+++||++||..... ...+++++||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~-~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPH-QGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTT-CBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCC-CccccEEEEe
Confidence 688999999875555667999999999999988 63311 11223555555542289999999986433 3678999999
Q ss_pred CCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCC---CCCCCcceeEEEEC---
Q 040145 181 MQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIAS---MGTNMASYDAAVLD--- 253 (402)
Q Consensus 181 ~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~---~~~~~~~~~~~~~~--- 253 (402)
+.+++|+.++++|.+|..|+++++ +++||++||.+... ++++||+.+++|+.++. +|.+|..+++++++
T Consensus 475 ~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp TTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred CCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence 999999999999999999999997 99999999986543 89999999999999986 88999999988876
Q ss_pred CEEEEEcccccCC-ccCCcEEEEeCCCCC------eeeccccccCCCceeE-EEEC-CEEEEEeccC-------CcEEEE
Q 040145 254 GKLLVTEGWLWPF-FVSPRGQVYDPSTDN------WESMAVGLREGWTGSS-VVVY-EHLFVVSELE-------RMKLKV 317 (402)
Q Consensus 254 g~ly~~gG~~~~~-~~~~~~~~yd~~~~~------W~~~~~~~~~~~~~~~-~~~~-~~l~~~gg~~-------~~~~~~ 317 (402)
++||++||..... ...+.+++||+.+++ |+.+...++.++.+++ ++++ ++||++||.+ .+.+++
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 630 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIIS 630 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEE
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEE
Confidence 8999999986443 456789999999999 8888763334555554 6777 9999999964 468999
Q ss_pred EeCCCCceeecCCCCCCc-------cccCCeEEEEeCC-EEEEEecCcee-----eeEEEEeccc
Q 040145 318 YDPSTDSWETIEGPPLPE-------QICKPFAVNACDC-RVYVVGRNLHV-----AVGHITRLST 369 (402)
Q Consensus 318 yd~~~~~W~~~~~~~~p~-------~~~~~~~~~~~~~-~i~v~GG~~~~-----~~~~v~~~~~ 369 (402)
||+.+++|+.+. +|. ..+.+|+++..++ +|||+||+.+. -.+++|.+|.
T Consensus 631 yd~~t~~W~~~~---~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~~cfsfGt~~n~i~~ldl 692 (695)
T 2zwa_A 631 LDPLSETLTSIP---ISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGATCYGFGSVTNVGLKLIA 692 (695)
T ss_dssp EETTTTEEEECC---CCHHHHHHSCCCCSSCEEECC---CEEEECCEEECTTSCEEECCCEEEEE
T ss_pred EECCCCeEEEee---ccccccCCCCccceeeeEEEeCCCEEEEEeCCccCcCccccccceEEEEE
Confidence 999999999654 332 2355677777665 99999996543 2346666654
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=1.8e-32 Score=274.92 Aligned_cols=223 Identities=14% Similarity=0.159 Sum_probs=185.9
Q ss_pred ceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecC-C-----CcccccceEEEEE--CCEEEEEcCCCCCCC
Q 040145 148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMN-K-----MITARSFFASGVI--GGMIYVAGGSSADLF 219 (402)
Q Consensus 148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~-~-----~~~~r~~~~~~~~--~~~iyv~GG~~~~~~ 219 (402)
++++++ .++.||++||... ...+++++||+.+++|+.++ + +|.+|..|+++++ +++||++||.+....
T Consensus 390 ~g~~~~-~~~~iyv~GG~~~---~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~ 465 (695)
T 2zwa_A 390 FGDVDV-AGNDVFYMGGSNP---YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQ 465 (695)
T ss_dssp SCEEEE-CSSCEEEECCBSS---SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTC
T ss_pred eeEEEE-ECCEEEEECCCCC---CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCC
Confidence 444443 4999999999854 46789999999999999987 5 7899999999999 999999999976554
Q ss_pred CCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE-CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccc--cccCCCcee
Q 040145 220 ELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL-DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV--GLREGWTGS 296 (402)
Q Consensus 220 ~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~--~~~~~~~~~ 296 (402)
..+++++||+.+++|+.++++|.+|..|+++++ +++||++||..... .+++||+.+++|+.++. .+|.++.++
T Consensus 466 ~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~~~~g~~p~~r~~~ 541 (695)
T 2zwa_A 466 GLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDVTPKDEFFQNSLVS 541 (695)
T ss_dssp BCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEECCCSSGGGGSCCBS
T ss_pred ccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEccCCCCCCCcccce
Confidence 478999999999999999999999999999996 99999999986543 79999999999999985 355556555
Q ss_pred E-EEEC---CEEEEEeccC------CcEEEEEeCCCCc------eeecCCCCCCccccCCeEEEEeC-CEEEEEecCcee
Q 040145 297 S-VVVY---EHLFVVSELE------RMKLKVYDPSTDS------WETIEGPPLPEQICKPFAVNACD-CRVYVVGRNLHV 359 (402)
Q Consensus 297 ~-~~~~---~~l~~~gg~~------~~~~~~yd~~~~~------W~~~~~~~~p~~~~~~~~~~~~~-~~i~v~GG~~~~ 359 (402)
+ ++++ ++||++||.. .+++++||+.+++ |+.+.. +|...|..+++++++ ++|||+||....
T Consensus 542 ~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~--~p~~~R~~~~~~~~~~~~iyv~GG~~~~ 619 (695)
T 2zwa_A 542 AGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQ--HPLFQRYGSQIKYITPRKLLIVGGTSPS 619 (695)
T ss_dssp CEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEE--CGGGCCBSCEEEEEETTEEEEECCBCSS
T ss_pred eEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCC--CCCCCcccceEEEeCCCEEEEECCccCC
Confidence 5 5656 8999999973 3689999999999 888874 333447888888888 999999996533
Q ss_pred ----eeEEEEecccccccCceeeeEEEEeCC
Q 040145 360 ----AVGHITRLSTSEKKWSFSVQWQVVDAP 386 (402)
Q Consensus 360 ----~~~~v~~~~~~~~~~~~~~~W~~~~~~ 386 (402)
...+++.||+..+ +|+.++.|
T Consensus 620 ~~~~~~~~v~~yd~~t~------~W~~~~~p 644 (695)
T 2zwa_A 620 GLFDRTNSIISLDPLSE------TLTSIPIS 644 (695)
T ss_dssp CCCCTTTSEEEEETTTT------EEEECCCC
T ss_pred CCCCCCCeEEEEECCCC------eEEEeecc
Confidence 3688999999888 77765544
No 17
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=100.00 E-value=3.1e-33 Score=280.21 Aligned_cols=307 Identities=14% Similarity=0.109 Sum_probs=220.1
Q ss_pred hhhhhhccHhHHHhhcCchHhHHHHhhcCC--CCCeEEEEEEeCCC-------CceeEEEeecCCCcEEeCCCCCCCCCC
Q 040145 73 HAACRAVCKRWHLLLGNKERFFTRRKELGF--KDPWLFVFAFHKCT-------GKIQWQVLDLTHYCWHTIPAMPCKDKV 143 (402)
Q Consensus 73 l~~~~~v~k~W~~l~~s~~~~~~~r~~~~~--~~~~l~~~gg~~~~-------~~~~~~~~d~~~~~W~~l~~~~~~~~~ 143 (402)
...+.....+|..+...| . .....+. .++.||++||.... ....+++||+.+++|..++.++.++
T Consensus 168 ~~~~dp~~~~W~~~~~~P-~---~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~-- 241 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTIDLP-I---VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH-- 241 (656)
T ss_dssp CCCCCTTSCEEEEEEECS-S---CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC--
T ss_pred cccCCCCCCeeeeeccCC-C---CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCC--
Confidence 334455677899888777 4 1122222 28899999986432 2346899999999999998887544
Q ss_pred CCCCce-EEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCC
Q 040145 144 CPHGFR-CVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFEL 221 (402)
Q Consensus 144 ~~~~~~-~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~ 221 (402)
..++ .+++..+++||++||... .++++||+.+++|+.+++|+.+|..|+++++ +++||++||........
T Consensus 242 --~~~~~~~~~~~~g~lyv~GG~~~------~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~ 313 (656)
T 1k3i_A 242 --DMFCPGISMDGNGQIVVTGGNDA------KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFE 313 (656)
T ss_dssp --CCSSCEEEECTTSCEEEECSSST------TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCC
T ss_pred --CCccccccCCCCCCEEEeCCCCC------CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCccc
Confidence 3333 233335899999999743 2799999999999999999999999999999 99999999953333347
Q ss_pred CeeEEEcCCCCcEEEc-----CCCCCCCcceeEEEECCEEEEEcccccCC---ccCCcEEEEeCCCCCeeeccccccC--
Q 040145 222 DSAEVLDPVKGNWRTI-----ASMGTNMASYDAAVLDGKLLVTEGWLWPF---FVSPRGQVYDPSTDNWESMAVGLRE-- 291 (402)
Q Consensus 222 ~~~~~yd~~t~~W~~~-----~~~~~~~~~~~~~~~~g~ly~~gG~~~~~---~~~~~~~~yd~~~~~W~~~~~~~~~-- 291 (402)
+++++||+.+++|+.+ .+++..+.. +++..++++|++||.++.. ...+.++.||+.++.|.......+.
T Consensus 314 ~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~ 392 (656)
T 1k3i_A 314 KNGEVYSPSSKTWTSLPNAKVNPMLTADKQ-GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNR 392 (656)
T ss_dssp CCEEEEETTTTEEEEETTSCSGGGCCCCTT-GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETT
T ss_pred ccceEeCCCCCcceeCCCcccccccccccc-ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcccccc
Confidence 8999999999999997 445555443 4455799999999976432 2346899999999998754322221
Q ss_pred -----CCceeEEE---ECCEEEEEeccC-------Cc---EEEEEeCCCCceeecCCCCCCccccCCeEEEEe-CCEEEE
Q 040145 292 -----GWTGSSVV---VYEHLFVVSELE-------RM---KLKVYDPSTDSWETIEGPPLPEQICKPFAVNAC-DCRVYV 352 (402)
Q Consensus 292 -----~~~~~~~~---~~~~l~~~gg~~-------~~---~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~-~~~i~v 352 (402)
+..+.++. .+++||++||.. .+ .+++||+.+++|.++...++|.. |..+++++. +|+|||
T Consensus 393 ~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~-R~~~~~~~l~~g~i~v 471 (656)
T 1k3i_A 393 GVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFA-RTFHTSVVLPDGSTFI 471 (656)
T ss_dssp EECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSC-CBSCEEEECTTSCEEE
T ss_pred ccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCC-cccCCeEECCCCCEEE
Confidence 22333333 489999999963 12 78999999999999862234433 666676665 999999
Q ss_pred EecCce-------eeeEEEEecccccccCceeeeEEEEeC---CCCCCCcccc--ceeEEe
Q 040145 353 VGRNLH-------VAVGHITRLSTSEKKWSFSVQWQVVDA---PDNFSDLTPS--SSQVLF 401 (402)
Q Consensus 353 ~GG~~~-------~~~~~v~~~~~~~~~~~~~~~W~~~~~---~~~~~~~~~~--~~~~~~ 401 (402)
+||... ....+++.||+..+ +|+.+.. |+..+..+.. +.+||+
T Consensus 472 ~GG~~~~~~~~~~~~~~~v~~ydp~t~------~W~~~~~~~~~R~~hs~a~ll~dg~v~v 526 (656)
T 1k3i_A 472 TGGQRRGIPFEDSTPVFTPEIYVPEQD------TFYKQNPNSIVRVYHSISLLLPDGRVFN 526 (656)
T ss_dssp ECCBSBCCTTCCCSBCCCCEEEEGGGT------EEEECCCCSSCCCTTEEEEECTTSCEEE
T ss_pred ECCcccCcCcCCCCcccceEEEcCCCC------ceeecCCCCCccccccHhhcCCCcEEEe
Confidence 999652 34688999999777 7777654 4444443333 555554
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.96 E-value=1.8e-29 Score=252.84 Aligned_cols=263 Identities=14% Similarity=0.160 Sum_probs=192.1
Q ss_pred EEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCC----CCCCceEEEEECCCCceeecCCCcccc
Q 040145 121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDV----DCPLDLVLKYEMQKNRWTVMNKMITAR 196 (402)
Q Consensus 121 ~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~----~~~~~~~~~~d~~t~~W~~~~~~~~~r 196 (402)
+..|||.+++|..++++|. ..++++++..+++||++||...+. ......+++||+.+++|+.++.++.+|
T Consensus 168 ~~~~dp~~~~W~~~~~~P~------~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~ 241 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTIDLPI------VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH 241 (656)
T ss_dssp CCCCCTTSCEEEEEEECSS------CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC
T ss_pred cccCCCCCCeeeeeccCCC------CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCC
Confidence 5678999999999888773 234555543389999999986432 123457999999999999999998887
Q ss_pred cceE--EEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE-CCEEEEEcccccCCccCCcE
Q 040145 197 SFFA--SGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL-DGKLLVTEGWLWPFFVSPRG 272 (402)
Q Consensus 197 ~~~~--~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~ly~~gG~~~~~~~~~~~ 272 (402)
..++ +++ .+++||++||... .++++||+.+++|+++++|+.+|..++++++ +|+||++||........+.+
T Consensus 242 ~~~~~~~~~~~~g~lyv~GG~~~-----~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~ 316 (656)
T 1k3i_A 242 DMFCPGISMDGNGQIVVTGGNDA-----KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNG 316 (656)
T ss_dssp CCSSCEEEECTTSCEEEECSSST-----TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCE
T ss_pred CCccccccCCCCCCEEEeCCCCC-----CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccc
Confidence 6653 343 5899999999753 3699999999999999999999999999999 99999999954444456789
Q ss_pred EEEeCCCCCeeecc----ccccCCCceeEEEECCEEEEEeccC--------CcEEEEEeCCCCceeecCCCCCCc-----
Q 040145 273 QVYDPSTDNWESMA----VGLREGWTGSSVVVYEHLFVVSELE--------RMKLKVYDPSTDSWETIEGPPLPE----- 335 (402)
Q Consensus 273 ~~yd~~~~~W~~~~----~~~~~~~~~~~~~~~~~l~~~gg~~--------~~~~~~yd~~~~~W~~~~~~~~p~----- 335 (402)
++||+.+++|+.++ .+++..+...++..++++|++||.+ ...+++||++++.|..... ..+.
T Consensus 317 e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~-~~~~~~~~~ 395 (656)
T 1k3i_A 317 EVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAG-KRQSNRGVA 395 (656)
T ss_dssp EEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEE-ECEETTEEC
T ss_pred eEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCC-ccccccccC
Confidence 99999999999974 2344444443456799999999865 3578999999999876432 1111
Q ss_pred cccCCeEEE---EeCCEEEEEecCce----e---eeEEEEecccccccCceeeeEEEEe-----CCCCCCCcccc-ceeE
Q 040145 336 QICKPFAVN---ACDCRVYVVGRNLH----V---AVGHITRLSTSEKKWSFSVQWQVVD-----APDNFSDLTPS-SSQV 399 (402)
Q Consensus 336 ~~~~~~~~~---~~~~~i~v~GG~~~----~---~~~~v~~~~~~~~~~~~~~~W~~~~-----~~~~~~~~~~~-~~~~ 399 (402)
..+..++++ ..+++|||+||... . ....++.||+..+ .|.++. .++..+.++.. +.++
T Consensus 396 ~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~------~W~~~~~~~mp~~R~~~~~~~l~~g~i 469 (656)
T 1k3i_A 396 PDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTS------PNTVFASNGLYFARTFHTSVVLPDGST 469 (656)
T ss_dssp CCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSC------CEEEECTTCCSSCCBSCEEEECTTSCE
T ss_pred CCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCC------CeeEEccCCCCCCcccCCeEECCCCCE
Confidence 012223333 36999999999532 1 2237999999887 666653 34444444444 5555
Q ss_pred Ee
Q 040145 400 LF 401 (402)
Q Consensus 400 ~~ 401 (402)
++
T Consensus 470 ~v 471 (656)
T 1k3i_A 470 FI 471 (656)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 19
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.97 E-value=4.5e-07 Score=85.89 Aligned_cols=270 Identities=14% Similarity=0.141 Sum_probs=143.4
Q ss_pred CCCCCCCcHHHHHHhhccCccchhhhhhhccHhHHHhhcCchHhHHHHhh-c----------------------------
Q 040145 50 EPFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKE-L---------------------------- 100 (402)
Q Consensus 50 ~~~~~~Lp~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~s~~~~~~~r~~-~---------------------------- 100 (402)
...+..||+|++..||+.|+..++.++..|||+|+.+..++ .+...... .
T Consensus 16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~~~ 94 (445)
T 2ovr_B 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDN-LLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYI 94 (445)
T ss_dssp CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCS-HHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHH
T ss_pred CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCch-hHhhhheeecccccccccccceecCCCccCCcHHHHHh
Confidence 34688999999999999999999999999999999998876 54332110 0
Q ss_pred ---------------------CCCCCeEEEEEEeC-----CCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEc
Q 040145 101 ---------------------GFKDPWLFVFAFHK-----CTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIP 154 (402)
Q Consensus 101 ---------------------~~~~~~l~~~gg~~-----~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~ 154 (402)
...+..+..+..+. ......+.+||..+.+-... +.... ....+...
T Consensus 95 ~~~~~~~~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~--~~~h~----~~v~~~~~- 167 (445)
T 2ovr_B 95 RQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT--LVGHT----GGVWSSQM- 167 (445)
T ss_dssp HHHHHHHHHHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEE--CCCCS----SCEEEEEE-
T ss_pred hhhhhhhcccCCCcceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEE--EcCCC----CCEEEEEe-
Confidence 00011111110000 01112355677665543221 11110 11223333
Q ss_pred cCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcE
Q 040145 155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNW 234 (402)
Q Consensus 155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 234 (402)
.+.+++.|+.+ ..+.+||..+++-... +............++..++.|+. ...+.+||..+++-
T Consensus 168 -~~~~l~s~~~d-------g~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~l~s~s~------dg~i~~wd~~~~~~ 231 (445)
T 2ovr_B 168 -RDNIIISGSTD-------RTLKVWNAETGECIHT--LYGHTSTVRCMHLHEKRVVSGSR------DATLRVWDIETGQC 231 (445)
T ss_dssp -ETTEEEEEETT-------SCEEEEETTTTEEEEE--ECCCSSCEEEEEEETTEEEEEET------TSEEEEEESSSCCE
T ss_pred -cCCEEEEEeCC-------CeEEEEECCcCcEEEE--ECCCCCcEEEEEecCCEEEEEeC------CCEEEEEECCCCcE
Confidence 45566777652 2689999988753221 11111122222334445666664 45788999887653
Q ss_pred EEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcE
Q 040145 235 RTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMK 314 (402)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~ 314 (402)
... +........++..++..++.|+.+ ..+..||+.+.+-...- ......-.++..++..++.|+. ...
T Consensus 232 ~~~--~~~~~~~v~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~l~~~~~-d~~ 300 (445)
T 2ovr_B 232 LHV--LMGHVAAVRCVQYDGRRVVSGAYD------FMVKVWDPETETCLHTL--QGHTNRVYSLQFDGIHVVSGSL-DTS 300 (445)
T ss_dssp EEE--EECCSSCEEEEEECSSCEEEEETT------SCEEEEEGGGTEEEEEE--CCCSSCEEEEEECSSEEEEEET-TSC
T ss_pred EEE--EcCCcccEEEEEECCCEEEEEcCC------CEEEEEECCCCcEeEEe--cCCCCceEEEEECCCEEEEEeC-CCe
Confidence 221 111122233444577777777753 36888998765422111 1111111224557777777776 557
Q ss_pred EEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCcee
Q 040145 315 LKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHV 359 (402)
Q Consensus 315 ~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~ 359 (402)
+.+||..+.+-...- ... .........++.+++.|+.++.
T Consensus 301 i~i~d~~~~~~~~~~--~~~---~~~v~~~~~~~~~l~~~~~dg~ 340 (445)
T 2ovr_B 301 IRVWDVETGNCIHTL--TGH---QSLTSGMELKDNILVSGNADST 340 (445)
T ss_dssp EEEEETTTCCEEEEE--CCC---CSCEEEEEEETTEEEEEETTSC
T ss_pred EEEEECCCCCEEEEE--cCC---cccEEEEEEeCCEEEEEeCCCe
Confidence 999999876533221 111 1122333445666777775543
No 20
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.96 E-value=2.8e-07 Score=87.74 Aligned_cols=39 Identities=21% Similarity=0.410 Sum_probs=36.5
Q ss_pred CCCCCCcHHHHHHhhccCccchhhhhhhccHhHHHhhcC
Q 040145 51 PFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGN 89 (402)
Q Consensus 51 ~~~~~Lp~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~s 89 (402)
..+..||+|++.+||+.|+..++.++..|||+|+.++..
T Consensus 13 d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 13 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred CChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 356789999999999999999999999999999999987
No 21
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.94 E-value=2.9e-07 Score=87.03 Aligned_cols=266 Identities=16% Similarity=0.128 Sum_probs=144.2
Q ss_pred CCCCCcHH----HHHHhhccCccchhhhhhhccHhHHHhhcCchHhHHHHh-----------------------------
Q 040145 52 FIPGLPDD----VALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRK----------------------------- 98 (402)
Q Consensus 52 ~~~~Lp~d----l~~~il~rlp~~~l~~~~~v~k~W~~l~~s~~~~~~~r~----------------------------- 98 (402)
.+..||+| ++..||+.|+..++.++..|||+|+.++..+ .+.+...
T Consensus 10 ~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 88 (435)
T 1p22_A 10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDG-MLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPP 88 (435)
T ss_dssp HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHT-THHHHHHHHHHTSCHHHHHHHHSSSGGGGCC-----
T ss_pred hHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCh-HHHHHHHHhhcCcchhhhhhhhccchhhhhhccCCC
Confidence 45679999 9999999999999999999999999887654 3221000
Q ss_pred ------------------------h----cC-----------CC---------CCeEEEEEEeCCCCceeEEEeecCCCc
Q 040145 99 ------------------------E----LG-----------FK---------DPWLFVFAFHKCTGKIQWQVLDLTHYC 130 (402)
Q Consensus 99 ------------------------~----~~-----------~~---------~~~l~~~gg~~~~~~~~~~~~d~~~~~ 130 (402)
. .. .. ++..++.|+.+ ..+.+||..+.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~g~~d----g~i~iwd~~~~~ 164 (435)
T 1p22_A 89 DGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRD----NTIKIWDKNTLE 164 (435)
T ss_dssp ----CCSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEECCCSSCCCEEEEECCSSEEEEEESS----SCEEEEESSSCC
T ss_pred CCCCCchhhHHhhhhhhhcchhHHHhhhccCCccceEEecccCCCCcEEEEEECCCEEEEEeCC----CeEEEEeCCCCe
Confidence 0 00 00 11122222221 236677776655
Q ss_pred EEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEE
Q 040145 131 WHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYV 210 (402)
Q Consensus 131 W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv 210 (402)
-... +.. +.....++..++.+++.|+.+ ..+.+||..+++-... +............++..++
T Consensus 165 ~~~~--~~~------h~~~v~~l~~~~~~l~sg~~d-------g~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~l~ 227 (435)
T 1p22_A 165 CKRI--LTG------HTGSVLCLQYDERVIITGSSD-------STVRVWDVNTGEMLNT--LIHHCEAVLHLRFNNGMMV 227 (435)
T ss_dssp EEEE--ECC------CSSCEEEEECCSSEEEEEETT-------SCEEEEESSSCCEEEE--ECCCCSCEEEEECCTTEEE
T ss_pred EEEE--EcC------CCCcEEEEEECCCEEEEEcCC-------CeEEEEECCCCcEEEE--EcCCCCcEEEEEEcCCEEE
Confidence 3222 111 111222222377788888763 2699999988764321 1111122223333455666
Q ss_pred EcCCCCCCCCCCeeEEEcCCCCcEEEc-CCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccc
Q 040145 211 AGGSSADLFELDSAEVLDPVKGNWRTI-ASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGL 289 (402)
Q Consensus 211 ~GG~~~~~~~~~~~~~yd~~t~~W~~~-~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~ 289 (402)
.|+. ...+.+||..+..-... ..+........++..++..++.|+.+ ..+.+||+.+++-...-.
T Consensus 228 s~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~-- 293 (435)
T 1p22_A 228 TCSK------DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGD------RTIKVWNTSTCEFVRTLN-- 293 (435)
T ss_dssp EEET------TSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETT------SEEEEEETTTCCEEEEEE--
T ss_pred EeeC------CCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCC------CeEEEEECCcCcEEEEEc--
Confidence 6665 35688899877542111 11111222233444466666666643 368899998764322111
Q ss_pred cCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCcee
Q 040145 290 REGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHV 359 (402)
Q Consensus 290 ~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~ 359 (402)
.....-.++..++.+++.|+. ...+.+||..+.+-...- ... ......+..++..++.|+.++.
T Consensus 294 ~~~~~v~~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~--~~h---~~~v~~~~~~~~~l~sg~~dg~ 357 (435)
T 1p22_A 294 GHKRGIACLQYRDRLVVSGSS-DNTIRLWDIECGACLRVL--EGH---EELVRCIRFDNKRIVSGAYDGK 357 (435)
T ss_dssp CCSSCEEEEEEETTEEEEEET-TSCEEEEETTTCCEEEEE--CCC---SSCEEEEECCSSEEEEEETTSC
T ss_pred CCCCcEEEEEeCCCEEEEEeC-CCeEEEEECCCCCEEEEE--eCC---cCcEEEEEecCCEEEEEeCCCc
Confidence 111111224456777777765 557999999876432211 111 1222344458888888886544
No 22
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.64 E-value=6.2e-06 Score=70.41 Aligned_cols=192 Identities=15% Similarity=0.063 Sum_probs=120.4
Q ss_pred CCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeE
Q 040145 146 HGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAE 225 (402)
Q Consensus 146 ~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 225 (402)
..|.......++.||+..|..+ .+.+.++|+.|++-..--+++......+++..+++||+.... .+.++
T Consensus 20 ~~ftqGL~~~~~~LyestG~~g-----~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~------~~~v~ 88 (243)
T 3mbr_X 20 TAFTEGLFYLRGHLYESTGETG-----RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR------NHEGF 88 (243)
T ss_dssp TCCEEEEEEETTEEEEEECCTT-----SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS------SSEEE
T ss_pred ccccccEEEECCEEEEECCCCC-----CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee------CCEEE
Confidence 4453333334899999998742 458999999999866544555555566778889999999764 67899
Q ss_pred EEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCee-eccc---cccCCCceeEEEEC
Q 040145 226 VLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWE-SMAV---GLREGWTGSSVVVY 301 (402)
Q Consensus 226 ~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~-~~~~---~~~~~~~~~~~~~~ 301 (402)
+||+.|.+-. ..++.+..+.+.+.-+++||+.-| .+.+..+|+++.+-. .+.. +.+.....-....+
T Consensus 89 v~D~~tl~~~--~ti~~~~~Gwglt~dg~~L~vSdg-------s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~ 159 (243)
T 3mbr_X 89 VYDLATLTPR--ARFRYPGEGWALTSDDSHLYMSDG-------TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVN 159 (243)
T ss_dssp EEETTTTEEE--EEEECSSCCCEEEECSSCEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEET
T ss_pred EEECCcCcEE--EEEeCCCCceEEeeCCCEEEEECC-------CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeC
Confidence 9999987633 233333455555555667888765 247999999987532 2322 11112222223469
Q ss_pred CEEEEEeccCCcEEEEEeCCCCc---eeecCCCCCC------ccccCCeEEEEe--CCEEEEEecCce
Q 040145 302 EHLFVVSELERMKLKVYDPSTDS---WETIEGPPLP------EQICKPFAVNAC--DCRVYVVGRNLH 358 (402)
Q Consensus 302 ~~l~~~gg~~~~~~~~yd~~~~~---W~~~~~~~~p------~~~~~~~~~~~~--~~~i~v~GG~~~ 358 (402)
|+||+- -...+.|.+.|+++.+ |..+.++... .......+++.. +++|||.|-...
T Consensus 160 G~lyan-vw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp 226 (243)
T 3mbr_X 160 GELLAN-VWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWP 226 (243)
T ss_dssp TEEEEE-ETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCS
T ss_pred CEEEEE-ECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCC
Confidence 999954 3347799999999875 4444422100 011122344443 578888887543
No 23
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.62 E-value=5.8e-05 Score=68.28 Aligned_cols=233 Identities=12% Similarity=0.021 Sum_probs=132.2
Q ss_pred CCCeEEEEEEeCCCCceeEEEeecCCCcE-EeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEEC
Q 040145 103 KDPWLFVFAFHKCTGKIQWQVLDLTHYCW-HTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEM 181 (402)
Q Consensus 103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~W-~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~ 181 (402)
.++.+|+.... ...+.++|+.+.+- ..++... ...+.+. ..++++|+.... .+.+.++|+
T Consensus 52 ~~~~lyv~~~~----~~~v~viD~~t~~~~~~i~~~~-------~p~~i~~-~~~g~lyv~~~~-------~~~v~~iD~ 112 (328)
T 3dsm_A 52 RDGIGWIVVNN----SHVIFAIDINTFKEVGRITGFT-------SPRYIHF-LSDEKAYVTQIW-------DYRIFIINP 112 (328)
T ss_dssp ETTEEEEEEGG----GTEEEEEETTTCCEEEEEECCS-------SEEEEEE-EETTEEEEEEBS-------CSEEEEEET
T ss_pred ECCEEEEEEcC----CCEEEEEECcccEEEEEcCCCC-------CCcEEEE-eCCCeEEEEECC-------CCeEEEEEC
Confidence 36778887632 34588999998875 3343222 1123333 237799998743 348999999
Q ss_pred CCCceee-cCCCccc----ccceEEEEECCEEEEEcC-CCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEE-EECC
Q 040145 182 QKNRWTV-MNKMITA----RSFFASGVIGGMIYVAGG-SSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAA-VLDG 254 (402)
Q Consensus 182 ~t~~W~~-~~~~~~~----r~~~~~~~~~~~iyv~GG-~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~-~~~g 254 (402)
.|++-.. ++ .... .....++..++++|+... . ...+.++|+.+++....-+.. ..-...+ .-+|
T Consensus 113 ~t~~~~~~i~-~g~~~~~~~~p~~i~~~~~~lyv~~~~~------~~~v~viD~~t~~~~~~i~~g--~~p~~i~~~~dG 183 (328)
T 3dsm_A 113 KTYEITGYIE-CPDMDMESGSTEQMVQYGKYVYVNCWSY------QNRILKIDTETDKVVDELTIG--IQPTSLVMDKYN 183 (328)
T ss_dssp TTTEEEEEEE-CTTCCTTTCBCCCEEEETTEEEEEECTT------CCEEEEEETTTTEEEEEEECS--SCBCCCEECTTS
T ss_pred CCCeEEEEEE-cCCccccCCCcceEEEECCEEEEEcCCC------CCEEEEEECCCCeEEEEEEcC--CCccceEEcCCC
Confidence 9987442 22 1110 022344457889999852 2 467999999998754321111 1111222 2368
Q ss_pred EEEEEcccccCCc----cCCcEEEEeCCCCCeeeccccccCC-CceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceee
Q 040145 255 KLLVTEGWLWPFF----VSPRGQVYDPSTDNWESMAVGLREG-WTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWET 327 (402)
Q Consensus 255 ~ly~~gG~~~~~~----~~~~~~~yd~~~~~W~~~~~~~~~~-~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~ 327 (402)
++|+......... ....+.++|+++++....-. .+.. .....+.. ++.+|+..+ .+++||+++.+...
T Consensus 184 ~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~-~~~g~~p~~la~~~d~~~lyv~~~----~v~~~d~~t~~~~~ 258 (328)
T 3dsm_A 184 KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK-FKLGDWPSEVQLNGTRDTLYWINN----DIWRMPVEADRVPV 258 (328)
T ss_dssp EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE-CCTTCCCEEEEECTTSCEEEEESS----SEEEEETTCSSCCS
T ss_pred CEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe-cCCCCCceeEEEecCCCEEEEEcc----EEEEEECCCCceee
Confidence 9888764321100 02579999999887553211 2211 11122333 466777643 79999998876532
Q ss_pred cCCCCCCccccCCeEEEE--eCCEEEEEecCceeeeEEEEecccc
Q 040145 328 IEGPPLPEQICKPFAVNA--CDCRVYVVGRNLHVAVGHITRLSTS 370 (402)
Q Consensus 328 ~~~~~~p~~~~~~~~~~~--~~~~i~v~GG~~~~~~~~v~~~~~~ 370 (402)
.. ..+.......++++ .+++|||....+....+.|.+||+.
T Consensus 259 ~~--~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 259 RP--FLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp SC--SBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred ee--eecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 22 11211133445655 4789999974333345679999875
No 24
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.59 E-value=6.1e-05 Score=68.17 Aligned_cols=218 Identities=11% Similarity=-0.011 Sum_probs=127.8
Q ss_pred CceeEEEeecCCCcEEeCC-----CCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCce-eecC
Q 040145 117 GKIQWQVLDLTHYCWHTIP-----AMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRW-TVMN 190 (402)
Q Consensus 117 ~~~~~~~~d~~~~~W~~l~-----~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W-~~~~ 190 (402)
....+..||+.+.+...-- ..+... ...+.+. .++++|+.... .+.+.++|+.|++- ..++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~----~~~~i~~--~~~~lyv~~~~-------~~~v~viD~~t~~~~~~i~ 81 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGD----VAQSMVI--RDGIGWIVVNN-------SHVIFAIDINTFKEVGRIT 81 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBS----CEEEEEE--ETTEEEEEEGG-------GTEEEEEETTTCCEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCc----cceEEEE--ECCEEEEEEcC-------CCEEEEEECcccEEEEEcC
Confidence 3556889999998875421 011000 1123333 48999998753 34899999999875 3343
Q ss_pred CCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCC----CcceeEEEECCEEEEEcccccC
Q 040145 191 KMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTN----MASYDAAVLDGKLLVTEGWLWP 265 (402)
Q Consensus 191 ~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~----~~~~~~~~~~g~ly~~gG~~~~ 265 (402)
.. .....++. -++++|+.... ...+.++|+.+++-...-+.... ..-...+..++++|+....
T Consensus 82 ~~---~~p~~i~~~~~g~lyv~~~~------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~--- 149 (328)
T 3dsm_A 82 GF---TSPRYIHFLSDEKAYVTQIW------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWS--- 149 (328)
T ss_dssp CC---SSEEEEEEEETTEEEEEEBS------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECT---
T ss_pred CC---CCCcEEEEeCCCeEEEEECC------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCC---
Confidence 22 22334444 67899998743 46799999999875421111110 0122334468899998521
Q ss_pred CccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccC---------CcEEEEEeCCCCceeecCCCCCCcc
Q 040145 266 FFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELE---------RMKLKVYDPSTDSWETIEGPPLPEQ 336 (402)
Q Consensus 266 ~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~---------~~~~~~yd~~~~~W~~~~~~~~p~~ 336 (402)
..+.+.++|+++++....-. ....-.+....-+|++|+..... ...++++|+++.+....- .++..
T Consensus 150 --~~~~v~viD~~t~~~~~~i~-~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~--~~~~g 224 (328)
T 3dsm_A 150 --YQNRILKIDTETDKVVDELT-IGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQF--KFKLG 224 (328)
T ss_dssp --TCCEEEEEETTTTEEEEEEE-CSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEE--ECCTT
T ss_pred --CCCEEEEEECCCCeEEEEEE-cCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEE--ecCCC
Confidence 12479999999887543221 11111222233468888875432 268999999988765322 23221
Q ss_pred ccCCeEEEEe--CCEEEEEecCceeeeEEEEecccccc
Q 040145 337 ICKPFAVNAC--DCRVYVVGRNLHVAVGHITRLSTSEK 372 (402)
Q Consensus 337 ~~~~~~~~~~--~~~i~v~GG~~~~~~~~v~~~~~~~~ 372 (402)
.....++.. ++.||+..+ .|+.+|+...
T Consensus 225 -~~p~~la~~~d~~~lyv~~~-------~v~~~d~~t~ 254 (328)
T 3dsm_A 225 -DWPSEVQLNGTRDTLYWINN-------DIWRMPVEAD 254 (328)
T ss_dssp -CCCEEEEECTTSCEEEEESS-------SEEEEETTCS
T ss_pred -CCceeEEEecCCCEEEEEcc-------EEEEEECCCC
Confidence 233455554 567888755 5778887554
No 25
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.56 E-value=6.3e-08 Score=61.98 Aligned_cols=43 Identities=26% Similarity=0.414 Sum_probs=38.0
Q ss_pred CCCCCCCcHHHHHHhhccCccchhhhhhhccHhHHHhhcCchHh
Q 040145 50 EPFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERF 93 (402)
Q Consensus 50 ~~~~~~Lp~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~s~~~~ 93 (402)
...|..||+|++.+||.+||..++.++..|||+|+.++.++ .+
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~-~l 48 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE-SL 48 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCG-GG
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCh-HH
Confidence 44688999999999999999999999999999999999988 55
No 26
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.49 E-value=2.8e-05 Score=66.97 Aligned_cols=193 Identities=14% Similarity=0.046 Sum_probs=117.4
Q ss_pred CCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeE
Q 040145 146 HGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAE 225 (402)
Q Consensus 146 ~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 225 (402)
..|.......++.||+..|..+ .+.+.++|+.|++-..--+++..-...+++..+++||+.-.. .+.++
T Consensus 42 ~~ftqGL~~~~~~LyestG~~g-----~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~------~~~v~ 110 (262)
T 3nol_A 42 KAFTEGFFYRNGYFYESTGLNG-----RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWK------NGLGF 110 (262)
T ss_dssp TCEEEEEEEETTEEEEEEEETT-----EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS------SSEEE
T ss_pred CcccceEEEECCEEEEECCCCC-----CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEee------CCEEE
Confidence 3344433334889999998732 458999999999755433444444455678889999999764 67899
Q ss_pred EEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCee-ecccc---ccCCCceeEEEEC
Q 040145 226 VLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWE-SMAVG---LREGWTGSSVVVY 301 (402)
Q Consensus 226 ~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~-~~~~~---~~~~~~~~~~~~~ 301 (402)
+||+.|.+-. ..++.+..+.+.+.-++.+|+.-| .+.+..+|+++.+-. .+... .+.....-....+
T Consensus 111 v~D~~t~~~~--~ti~~~~eG~glt~dg~~L~~SdG-------s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~ 181 (262)
T 3nol_A 111 VWNIRNLRQV--RSFNYDGEGWGLTHNDQYLIMSDG-------TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVD 181 (262)
T ss_dssp EEETTTCCEE--EEEECSSCCCCEEECSSCEEECCS-------SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEET
T ss_pred EEECccCcEE--EEEECCCCceEEecCCCEEEEECC-------CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEEC
Confidence 9999987643 222333355555554667888655 247999999986533 33321 1111112233459
Q ss_pred CEEEEEeccCCcEEEEEeCCCCc---eeecCCCCC-----CccccCCeEEEEe--CCEEEEEecCcee
Q 040145 302 EHLFVVSELERMKLKVYDPSTDS---WETIEGPPL-----PEQICKPFAVNAC--DCRVYVVGRNLHV 359 (402)
Q Consensus 302 ~~l~~~gg~~~~~~~~yd~~~~~---W~~~~~~~~-----p~~~~~~~~~~~~--~~~i~v~GG~~~~ 359 (402)
|+||+- -...+.|.+.|+++.+ |..+.++.. ........+++.. ++++||.|-....
T Consensus 182 G~lyan-~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~ 248 (262)
T 3nol_A 182 GEIFAN-VWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPK 248 (262)
T ss_dssp TEEEEE-ETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSE
T ss_pred CEEEEE-EccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCc
Confidence 999954 4447799999999875 333332110 0001122345443 5788888875433
No 27
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.38 E-value=7e-05 Score=64.52 Aligned_cols=188 Identities=10% Similarity=0.062 Sum_probs=114.7
Q ss_pred CCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeE
Q 040145 146 HGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAE 225 (402)
Q Consensus 146 ~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 225 (402)
..|.......++.||+..|.. ..+.++|+.|++-..-- ++..-...+++..+++||+.... .+.++
T Consensus 54 ~~ftqGL~~~~~~Ly~stG~~-------g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~------~~~v~ 119 (268)
T 3nok_A 54 NAFTQGLVFHQGHFFESTGHQ-------GTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWT------EGLLF 119 (268)
T ss_dssp TCCEEEEEEETTEEEEEETTT-------TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESS------SCEEE
T ss_pred ccccceEEEECCEEEEEcCCC-------CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEcc------CCEEE
Confidence 344443333489999999873 24999999999754322 44333445677889999999664 57899
Q ss_pred EEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCee-ecccc---ccCCCceeEEEEC
Q 040145 226 VLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWE-SMAVG---LREGWTGSSVVVY 301 (402)
Q Consensus 226 ~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~-~~~~~---~~~~~~~~~~~~~ 301 (402)
+||+.|.+-.. .++.+..+.+.+.-+++||+.-| .+.+..+|+++.+-. .+... .+.....-....+
T Consensus 120 V~D~~Tl~~~~--ti~~~~eGwGLt~Dg~~L~vSdG-------s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~d 190 (268)
T 3nok_A 120 TWSGMPPQRER--TTRYSGEGWGLCYWNGKLVRSDG-------GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECAN 190 (268)
T ss_dssp EEETTTTEEEE--EEECSSCCCCEEEETTEEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEET
T ss_pred EEECCcCcEEE--EEeCCCceeEEecCCCEEEEECC-------CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeC
Confidence 99999876432 22333345666666778998865 248999999987543 23221 1111112223459
Q ss_pred CEEEEEeccCCcEEEEEeCCCCc---eeecCCCC------CCccccCCeEEEEe--CCEEEEEecCc
Q 040145 302 EHLFVVSELERMKLKVYDPSTDS---WETIEGPP------LPEQICKPFAVNAC--DCRVYVVGRNL 357 (402)
Q Consensus 302 ~~l~~~gg~~~~~~~~yd~~~~~---W~~~~~~~------~p~~~~~~~~~~~~--~~~i~v~GG~~ 357 (402)
|+||+ .-...+.|.+.|+++.+ |..+.++. .........+++.. +++|||.|-..
T Consensus 191 G~lya-nvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~W 256 (268)
T 3nok_A 191 GVIYA-NIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLW 256 (268)
T ss_dssp TEEEE-EETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTC
T ss_pred CEEEE-EECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCC
Confidence 99985 34447799999999875 33333110 00011122344443 57888888744
No 28
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.24 E-value=0.0027 Score=58.17 Aligned_cols=231 Identities=14% Similarity=0.152 Sum_probs=129.6
Q ss_pred CCCeEEEEEEeCCCCceeEEEeecCCCc--EEeCCCCCCC-CCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEE
Q 040145 103 KDPWLFVFAFHKCTGKIQWQVLDLTHYC--WHTIPAMPCK-DKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKY 179 (402)
Q Consensus 103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~--W~~l~~~~~~-~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~ 179 (402)
.++.+|+... ...+++||+.+.+ |+.-...... ...............++.||+.... ..++.+
T Consensus 52 ~~~~v~~~~~-----~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~--------g~l~a~ 118 (376)
T 3q7m_A 52 ADNVVYAADR-----AGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEK--------AQVYAL 118 (376)
T ss_dssp ETTEEEEECT-----TSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETT--------SEEEEE
T ss_pred ECCEEEEEcC-----CCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCC--------CEEEEE
Confidence 4677777642 2358899998765 7543211100 0000122222222248888886432 379999
Q ss_pred ECCCCc--eeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCC--CCcceeEEEEC
Q 040145 180 EMQKNR--WTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGT--NMASYDAAVLD 253 (402)
Q Consensus 180 d~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~--~~~~~~~~~~~ 253 (402)
|+.|++ |+.-..-. .....+..++.+|+... ...+..||..+++ |+.-...+. .+.....+..+
T Consensus 119 d~~tG~~~W~~~~~~~---~~~~p~~~~~~v~v~~~-------~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~ 188 (376)
T 3q7m_A 119 NTSDGTVAWQTKVAGE---ALSRPVVSDGLVLIHTS-------NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAF 188 (376)
T ss_dssp ETTTCCEEEEEECSSC---CCSCCEEETTEEEEECT-------TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEET
T ss_pred ECCCCCEEEEEeCCCc---eEcCCEEECCEEEEEcC-------CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEEC
Confidence 999885 76532211 12223456888887543 3578999998876 876432221 11123344557
Q ss_pred CEEEEEcccccCCccCCcEEEEeCCCCC--eeeccccccCC---------CceeEEEECCEEEEEeccCCcEEEEEeCCC
Q 040145 254 GKLLVTEGWLWPFFVSPRGQVYDPSTDN--WESMAVGLREG---------WTGSSVVVYEHLFVVSELERMKLKVYDPST 322 (402)
Q Consensus 254 g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~---------~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~ 322 (402)
+.+|+... ...+..||+.+++ |+.-.. .+.. .....+..++.+|+.+. ...+..+|+++
T Consensus 189 ~~v~~g~~-------~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~--~g~l~~~d~~t 258 (376)
T 3q7m_A 189 GAAVVGGD-------NGRVSAVLMEQGQMIWQQRIS-QATGSTEIDRLSDVDTTPVVVNGVVFALAY--NGNLTALDLRS 258 (376)
T ss_dssp TEEEECCT-------TTEEEEEETTTCCEEEEEECC-C-----------CCCCCCEEETTEEEEECT--TSCEEEEETTT
T ss_pred CEEEEEcC-------CCEEEEEECCCCcEEEEEecc-cCCCCcccccccccCCCcEEECCEEEEEec--CcEEEEEECCC
Confidence 88777322 1268999998764 765322 1111 11222567888887642 34789999977
Q ss_pred C--ceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEecccccccCceeeeEEEE
Q 040145 323 D--SWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVV 383 (402)
Q Consensus 323 ~--~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W~~~ 383 (402)
. .|+.-. + .....+..++.||+.... +.++.+|+... ...|+.-
T Consensus 259 G~~~w~~~~----~----~~~~~~~~~~~l~~~~~~-----g~l~~~d~~tG----~~~w~~~ 304 (376)
T 3q7m_A 259 GQIMWKREL----G----SVNDFIVDGNRIYLVDQN-----DRVMALTIDGG----VTLWTQS 304 (376)
T ss_dssp CCEEEEECC----C----CEEEEEEETTEEEEEETT-----CCEEEEETTTC----CEEEEEC
T ss_pred CcEEeeccC----C----CCCCceEECCEEEEEcCC-----CeEEEEECCCC----cEEEeec
Confidence 6 476532 1 123556678999987652 34777876433 3478764
No 29
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.23 E-value=0.00095 Score=57.97 Aligned_cols=183 Identities=13% Similarity=0.041 Sum_probs=108.4
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEE
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWR 235 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 235 (402)
++.||+..|.. ..+.+.++|+.|++-...-+++......+++..+++||+.... .+.+.+||+.|.+=
T Consensus 31 dg~Lyvstg~~-----~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~------~~~v~viD~~t~~v- 98 (266)
T 2iwa_A 31 NDTLFESTGLY-----GRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWL------KNIGFIYDRRTLSN- 98 (266)
T ss_dssp TTEEEEEECST-----TTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETT------CSEEEEEETTTTEE-
T ss_pred CCeEEEECCCC-----CCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEec------CCEEEEEECCCCcE-
Confidence 48999988752 2458999999999755433333333445677788999999754 57899999998753
Q ss_pred EcCCCCCC-CcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCe-eecccc---ccCCCceeEEEECCEEEEEecc
Q 040145 236 TIASMGTN-MASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNW-ESMAVG---LREGWTGSSVVVYEHLFVVSEL 310 (402)
Q Consensus 236 ~~~~~~~~-~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W-~~~~~~---~~~~~~~~~~~~~~~l~~~gg~ 310 (402)
+..++.+ ..+.+.+.-++++|+..| .+.+..+|+++.+- ..+... .+..........++++|+--.
T Consensus 99 -~~~i~~g~~~g~glt~Dg~~l~vs~g-------s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~- 169 (266)
T 2iwa_A 99 -IKNFTHQMKDGWGLATDGKILYGSDG-------TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIW- 169 (266)
T ss_dssp -EEEEECCSSSCCEEEECSSSEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEET-
T ss_pred -EEEEECCCCCeEEEEECCCEEEEECC-------CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecC-
Confidence 2222222 233343333556887654 24899999988653 233321 111122223334899986543
Q ss_pred CCcEEEEEeCCCCc---eeecCCCC------CCccccCCeEEEEe--CCEEEEEecCcee
Q 040145 311 ERMKLKVYDPSTDS---WETIEGPP------LPEQICKPFAVNAC--DCRVYVVGRNLHV 359 (402)
Q Consensus 311 ~~~~~~~yd~~~~~---W~~~~~~~------~p~~~~~~~~~~~~--~~~i~v~GG~~~~ 359 (402)
..+.|.+.|+++.+ |..++++. .........+++.. ++++||.|+....
T Consensus 170 ~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~ 229 (266)
T 2iwa_A 170 QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPK 229 (266)
T ss_dssp TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSE
T ss_pred CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCe
Confidence 36799999999874 22222100 00000122355443 5689999986544
No 30
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.22 E-value=0.0033 Score=57.64 Aligned_cols=224 Identities=15% Similarity=0.138 Sum_probs=127.6
Q ss_pred CCCeEEEEEEeCCCCceeEEEeecCCCc--EEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEE
Q 040145 103 KDPWLFVFAFHKCTGKIQWQVLDLTHYC--WHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYE 180 (402)
Q Consensus 103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~--W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d 180 (402)
.++.+|+... ...+++||+.+.+ |+.-..-. .....++. ++.||+... ...++.||
T Consensus 102 ~~~~v~v~~~-----~g~l~a~d~~tG~~~W~~~~~~~-------~~~~p~~~--~~~v~v~~~--------~g~l~~~d 159 (376)
T 3q7m_A 102 SGGHVYIGSE-----KAQVYALNTSDGTVAWQTKVAGE-------ALSRPVVS--DGLVLIHTS--------NGQLQALN 159 (376)
T ss_dssp ETTEEEEEET-----TSEEEEEETTTCCEEEEEECSSC-------CCSCCEEE--TTEEEEECT--------TSEEEEEE
T ss_pred eCCEEEEEcC-----CCEEEEEECCCCCEEEEEeCCCc-------eEcCCEEE--CCEEEEEcC--------CCeEEEEE
Confidence 4566776532 2358899998776 75422111 11111222 777877543 23799999
Q ss_pred CCCCc--eeecCCCcc--cccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCCCC--------cc
Q 040145 181 MQKNR--WTVMNKMIT--ARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGTNM--------AS 246 (402)
Q Consensus 181 ~~t~~--W~~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~--------~~ 246 (402)
+.|++ |+.-...+. .+.....+..++.+|+.. . ...+..||+.+++ |+.-...+... ..
T Consensus 160 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~-~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 232 (376)
T 3q7m_A 160 EADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGG-D------NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVD 232 (376)
T ss_dssp TTTCCEEEEEECCC-----CCCCCCEEETTEEEECC-T------TTEEEEEETTTCCEEEEEECCC-----------CCC
T ss_pred CCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEc-C------CCEEEEEECCCCcEEEEEecccCCCCcccccccccC
Confidence 99886 876432221 122234455577777632 2 3468999998775 77543222111 11
Q ss_pred eeEEEECCEEEEEcccccCCccCCcEEEEeCCCCC--eeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCc
Q 040145 247 YDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 247 ~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
...+..++.+|+.+.. ..+.++|+.+++ |+.-.. .....+..++.+|+... ...++.||+.+.+
T Consensus 233 ~~p~~~~~~v~~~~~~-------g~l~~~d~~tG~~~w~~~~~-----~~~~~~~~~~~l~~~~~--~g~l~~~d~~tG~ 298 (376)
T 3q7m_A 233 TTPVVVNGVVFALAYN-------GNLTALDLRSGQIMWKRELG-----SVNDFIVDGNRIYLVDQ--NDRVMALTIDGGV 298 (376)
T ss_dssp CCCEEETTEEEEECTT-------SCEEEEETTTCCEEEEECCC-----CEEEEEEETTEEEEEET--TCCEEEEETTTCC
T ss_pred CCcEEECCEEEEEecC-------cEEEEEECCCCcEEeeccCC-----CCCCceEECCEEEEEcC--CCeEEEEECCCCc
Confidence 2334568888886531 368999998764 764321 11223566889988754 3479999998764
Q ss_pred --eeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEecccccccCceeeeEEEE
Q 040145 325 --WETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVV 383 (402)
Q Consensus 325 --W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W~~~ 383 (402)
|+.-. ++. ......+..++.||+.... +.++.+|+... +..|+.-
T Consensus 299 ~~w~~~~---~~~--~~~~~~~~~~~~l~v~~~~-----g~l~~~d~~tG----~~~~~~~ 345 (376)
T 3q7m_A 299 TLWTQSD---LLH--RLLTSPVLYNGNLVVGDSE-----GYLHWINVEDG----RFVAQQK 345 (376)
T ss_dssp EEEEECT---TTT--SCCCCCEEETTEEEEECTT-----SEEEEEETTTC----CEEEEEE
T ss_pred EEEeecc---cCC--CcccCCEEECCEEEEEeCC-----CeEEEEECCCC----cEEEEEe
Confidence 76532 211 1223445568888886542 35888886443 3467653
No 31
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.20 E-value=1.1e-06 Score=77.06 Aligned_cols=49 Identities=29% Similarity=0.628 Sum_probs=43.8
Q ss_pred CCCCCCCcHHHHHHhhccCccchhh-hhhhccHhHHHhhcCchHhHHHHhh
Q 040145 50 EPFIPGLPDDVALNCLLRLPVESHA-ACRAVCKRWHLLLGNKERFFTRRKE 99 (402)
Q Consensus 50 ~~~~~~Lp~dl~~~il~rlp~~~l~-~~~~v~k~W~~l~~s~~~~~~~r~~ 99 (402)
...+..||+||+.+||++||.++|. ++++|||+|+.++.++ .|...+..
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~-~~w~~~~~ 97 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGA-PLWLLKCQ 97 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSH-HHHHHHHH
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcCh-HHHHHHhh
Confidence 4578899999999999999999999 9999999999999999 88665543
No 32
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.03 E-value=0.0019 Score=55.99 Aligned_cols=225 Identities=16% Similarity=0.080 Sum_probs=115.0
Q ss_pred CCeEEE-EEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECC
Q 040145 104 DPWLFV-FAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQ 182 (402)
Q Consensus 104 ~~~l~~-~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~ 182 (402)
++.+|+ ... ....+.+||+.+............ .-.+. ++..++.||+... ...+++||+.
T Consensus 34 ~g~l~v~~~~----~~~~i~~~~~~~~~~~~~~~~~~~-----~p~~i-~~~~~g~l~v~~~--------~~~i~~~d~~ 95 (270)
T 1rwi_B 34 AGNVYVTSEG----MYGRVVKLATGSTGTTVLPFNGLY-----QPQGL-AVDGAGTVYVTDF--------NNRVVTLAAG 95 (270)
T ss_dssp TCCEEEEECS----SSCEEEEECC-----EECCCCSCC-----SCCCE-EECTTCCEEEEET--------TTEEEEECTT
T ss_pred CCCEEEEccC----CCCcEEEecCCCcccceEeeCCcC-----Cccee-EECCCCCEEEEcC--------CCEEEEEeCC
Confidence 456777 421 223477888876655443321100 11233 3334667888764 1279999998
Q ss_pred CCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE-CCEEEEEc
Q 040145 183 KNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL-DGKLLVTE 260 (402)
Q Consensus 183 t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~ly~~g 260 (402)
++....+.... ......++.. ++++|+.... ...+.+||..+.......... ...-...+.- +|++|+..
T Consensus 96 ~~~~~~~~~~~-~~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~~-~~~p~~i~~~~~g~l~v~~ 167 (270)
T 1rwi_B 96 SNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRG------NNRVVKLAAGSKTQTVLPFTG-LNDPDGVAVDNSGNVYVTD 167 (270)
T ss_dssp CSCCEECCCCS-CSSEEEEEECTTCCEEEEEGG------GTEEEEECTTCCSCEECCCCS-CCSCCCEEECTTCCEEEEE
T ss_pred CceEeeeecCC-cCCCcceEECCCCCEEEEECC------CCEEEEEECCCceeEeecccc-CCCceeEEEeCCCCEEEEE
Confidence 87654432211 1122333333 5688887543 456888887766544332111 1111223332 67888875
Q ss_pred ccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCcccc
Q 040145 261 GWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQIC 338 (402)
Q Consensus 261 G~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~ 338 (402)
.. ...+.+||+.+..-..... ... .....+.+ +|.+|+.... ...+.+||+.+..-.... ... ..
T Consensus 168 ~~------~~~i~~~~~~~~~~~~~~~-~~~-~~p~~i~~d~~g~l~v~~~~-~~~v~~~~~~~~~~~~~~---~~~-~~ 234 (270)
T 1rwi_B 168 TD------NNRVVKLEAESNNQVVLPF-TDI-TAPWGIAVDEAGTVYVTEHN-TNQVVKLLAGSTTSTVLP---FTG-LN 234 (270)
T ss_dssp GG------GTEEEEECTTTCCEEECCC-SSC-CSEEEEEECTTCCEEEEETT-TSCEEEECTTCSCCEECC---CCS-CS
T ss_pred CC------CCEEEEEecCCCceEeecc-cCC-CCceEEEECCCCCEEEEECC-CCcEEEEcCCCCcceeec---cCC-CC
Confidence 43 2378999988765433321 111 11122333 5688876543 557999999776433322 111 12
Q ss_pred CCeEEEE-eCCEEEEEecCceeeeEEEEeccccc
Q 040145 339 KPFAVNA-CDCRVYVVGRNLHVAVGHITRLSTSE 371 (402)
Q Consensus 339 ~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~~~ 371 (402)
...+++. .+|+||+....++. |..|+..+
T Consensus 235 ~p~~i~~~~~g~l~v~~~~~~~----v~~~~~~~ 264 (270)
T 1rwi_B 235 TPLAVAVDSDRTVYVADRGNDR----VVKLTSLE 264 (270)
T ss_dssp CEEEEEECTTCCEEEEEGGGTE----EEEECCCG
T ss_pred CceeEEECCCCCEEEEECCCCE----EEEEcCCC
Confidence 2344444 46789988765443 66665433
No 33
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.03 E-value=0.0056 Score=53.61 Aligned_cols=224 Identities=7% Similarity=-0.005 Sum_probs=118.6
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK 183 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t 183 (402)
++.+|+... ....++.||+. .+...+. ++... ......++..++.||+.... ...+++||+ +
T Consensus 67 ~g~l~v~~~----~~~~i~~~~~~-g~~~~~~-~~~~~----~~~~~i~~~~~g~l~v~~~~-------~~~i~~~d~-~ 128 (299)
T 2z2n_A 67 DGEVWFTEN----AANKIGRITKK-GIIKEYT-LPNPD----SAPYGITEGPNGDIWFTEMN-------GNRIGRITD-D 128 (299)
T ss_dssp TSCEEEEET----TTTEEEEECTT-SCEEEEE-CSSTT----CCEEEEEECTTSCEEEEETT-------TTEEEEECT-T
T ss_pred CCCEEEeCC----CCCeEEEECCC-CcEEEEe-CCCcC----CCceeeEECCCCCEEEEecC-------CceEEEECC-C
Confidence 556777642 12347888886 4444432 11111 12233444346788887543 237899999 6
Q ss_pred CceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEc
Q 040145 184 NRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTE 260 (402)
Q Consensus 184 ~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~g 260 (402)
++...............++.- ++.+|+.... ...+.+||+ +++..... .+..........+ +|.+|+..
T Consensus 129 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~ 200 (299)
T 2z2n_A 129 GKIREYELPNKGSYPSFITLGSDNALWFTENQ------NNAIGRITE-SGDITEFK-IPTPASGPVGITKGNDDALWFVE 200 (299)
T ss_dssp CCEEEEECSSTTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECTTSSEEEEE
T ss_pred CCEEEecCCCCCCCCceEEEcCCCCEEEEeCC------CCEEEEEcC-CCcEEEee-CCCCCCcceeEEECCCCCEEEEc
Confidence 665543211111222333333 5688887532 457899999 77766542 1211222223333 57888865
Q ss_pred ccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCcccc
Q 040145 261 GWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQIC 338 (402)
Q Consensus 261 G~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~ 338 (402)
.. ...+.+||+ +++...+..+...... ..+.+ +|.+|+... ....+.+||+ +.+...+. ++....
T Consensus 201 ~~------~~~i~~~~~-~g~~~~~~~~~~~~~~-~~i~~~~~g~l~v~~~-~~~~i~~~d~-~g~~~~~~---~~~~~~ 267 (299)
T 2z2n_A 201 II------GNKIGRITT-SGEITEFKIPTPNARP-HAITAGAGIDLWFTEW-GANKIGRLTS-NNIIEEYP---IQIKSA 267 (299)
T ss_dssp TT------TTEEEEECT-TCCEEEEECSSTTCCE-EEEEECSTTCEEEEET-TTTEEEEEET-TTEEEEEE---CSSSSC
T ss_pred cC------CceEEEECC-CCcEEEEECCCCCCCc-eeEEECCCCCEEEecc-CCceEEEECC-CCceEEEe---CCCCCC
Confidence 32 237899999 7776654321111111 12333 678887642 3568999999 44544443 221112
Q ss_pred CCeEEEEeCCEEEEEecCceeeeEEEEeccccc
Q 040145 339 KPFAVNACDCRVYVVGRNLHVAVGHITRLSTSE 371 (402)
Q Consensus 339 ~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~ 371 (402)
...+++..++.||+.... +.+..+++..
T Consensus 268 ~~~~i~~~~g~l~v~~~~-----~~l~~~~~~~ 295 (299)
T 2z2n_A 268 EPHGICFDGETIWFAMEC-----DKIGKLTLIK 295 (299)
T ss_dssp CEEEEEECSSCEEEEETT-----TEEEEEEEC-
T ss_pred ccceEEecCCCEEEEecC-----CcEEEEEcCc
Confidence 233444467888887642 2366666543
No 34
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.01 E-value=0.0063 Score=53.21 Aligned_cols=223 Identities=10% Similarity=0.087 Sum_probs=113.7
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEE-ccCCEEEEEeCccCCCCCCCceEEEEECC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSI-PREGTLFVCGGMVSDVDCPLDLVLKYEMQ 182 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~d~~ 182 (402)
++.+|+.... ...+.+||+.......+.......... ..-..+++ ..++.||+.+.. ....+.+||+.
T Consensus 40 ~g~l~v~~~~----~~~i~~~d~~g~~~~~~~~~~~~~~~~-~~p~~i~~~~~~g~l~v~~~~------~~~~i~~~d~~ 108 (286)
T 1q7f_A 40 QNDIIVADTN----NHRIQIFDKEGRFKFQFGECGKRDSQL-LYPNRVAVVRNSGDIIVTERS------PTHQIQIYNQY 108 (286)
T ss_dssp TCCEEEEEGG----GTEEEEECTTSCEEEEECCBSSSTTCB-SSEEEEEEETTTTEEEEEECG------GGCEEEEECTT
T ss_pred CCCEEEEECC----CCEEEEECCCCcEEEEecccCCCcccc-cCceEEEEEcCCCeEEEEcCC------CCCEEEEECCC
Confidence 4567776532 234788888755444443211111001 11223333 357899998742 12378999965
Q ss_pred CCceeecCCCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEE
Q 040145 183 KNRWTVMNKMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVT 259 (402)
Q Consensus 183 t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~ 259 (402)
...-+.+... .......+++ -++++|+.... ...+.+||+.......+... ........+.+ +|.+|+.
T Consensus 109 g~~~~~~~~~-~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~-~~~~~p~~i~~~~~g~l~v~ 180 (286)
T 1q7f_A 109 GQFVRKFGAT-ILQHPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNVLHKFGCS-KHLEFPNGVVVNDKQEIFIS 180 (286)
T ss_dssp SCEEEEECTT-TCSCEEEEEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECT-TTCSSEEEEEECSSSEEEEE
T ss_pred CcEEEEecCc-cCCCceEEEEeCCCCEEEEECC------CCEEEEEcCCCCEEEEeCCC-CccCCcEEEEECCCCCEEEE
Confidence 4433333221 1111233333 25688888653 45789999876554444211 11112233333 6889887
Q ss_pred cccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccc
Q 040145 260 EGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQI 337 (402)
Q Consensus 260 gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~ 337 (402)
... ...+.+||+.......+... ........+.+ +|++|+....+...+.+||+....-..+.. ..+.
T Consensus 181 ~~~------~~~i~~~~~~g~~~~~~~~~-g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~-~~~~-- 250 (286)
T 1q7f_A 181 DNR------AHCVKVFNYEGQYLRQIGGE-GITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALES-KVKH-- 250 (286)
T ss_dssp EGG------GTEEEEEETTCCEEEEESCT-TTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEE-SSCC--
T ss_pred ECC------CCEEEEEcCCCCEEEEEccC-CccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcc-cCCC--
Confidence 643 24789999865543333321 10011112333 688888765422389999987654444331 1111
Q ss_pred cCCeEEE-EeCCEEEEEec
Q 040145 338 CKPFAVN-ACDCRVYVVGR 355 (402)
Q Consensus 338 ~~~~~~~-~~~~~i~v~GG 355 (402)
....+++ ..+|+|||...
T Consensus 251 ~~~~~i~~~~~g~l~vs~~ 269 (286)
T 1q7f_A 251 AQCFDVALMDDGSVVLASK 269 (286)
T ss_dssp SCEEEEEEETTTEEEEEET
T ss_pred CcceeEEECCCCcEEEECC
Confidence 1223343 35789998853
No 35
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.91 E-value=0.0012 Score=60.77 Aligned_cols=220 Identities=17% Similarity=0.144 Sum_probs=113.0
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEEECC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQ 182 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~ 182 (402)
+..+|+.+..+ ..+.++|..+.+....-..+ .....+++..++ .||+.+.. ...+.+||..
T Consensus 43 g~~l~~~~~~d----~~i~v~d~~~~~~~~~~~~~-------~~v~~~~~spdg~~l~~~~~~-------~~~v~v~d~~ 104 (391)
T 1l0q_A 43 GTKVYVANAHS----NDVSIIDTATNNVIATVPAG-------SSPQGVAVSPDGKQVYVTNMA-------SSTLSVIDTT 104 (391)
T ss_dssp SSEEEEEEGGG----TEEEEEETTTTEEEEEEECS-------SSEEEEEECTTSSEEEEEETT-------TTEEEEEETT
T ss_pred CCEEEEECCCC----CeEEEEECCCCeEEEEEECC-------CCccceEECCCCCEEEEEECC-------CCEEEEEECC
Confidence 44566665332 24788999887654432222 122334443344 56666543 2379999999
Q ss_pred CCceeecCCCcccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE-CC-EEEE
Q 040145 183 KNRWTVMNKMITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL-DG-KLLV 258 (402)
Q Consensus 183 t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g-~ly~ 258 (402)
+++....-. .......++.. +..+|+.++. ...+.+||..+++....-... ......+.. ++ .+|+
T Consensus 105 ~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~dg~~l~~ 174 (391)
T 1l0q_A 105 SNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNG------DKTVSVINTVTKAVINTVSVG--RSPKGIAVTPDGTKVYV 174 (391)
T ss_dssp TTEEEEEEE--CSSSEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEECC--SSEEEEEECTTSSEEEE
T ss_pred CCeEEEEEe--CCCCcceEEECCCCCEEEEEeCC------CCEEEEEECCCCcEEEEEecC--CCcceEEECCCCCEEEE
Confidence 886543221 12222334443 3367777754 457999999988754432211 111222222 44 5666
Q ss_pred EcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CCEEEEEecc--CCcEEEEEeCCCCceeecCCCCCC
Q 040145 259 TEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSEL--ERMKLKVYDPSTDSWETIEGPPLP 334 (402)
Q Consensus 259 ~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~--~~~~~~~yd~~~~~W~~~~~~~~p 334 (402)
.++.. ..+.+||+.+++-...-. .......+.+ +++.+++++. ....+.+||+.+.+-...- +..
T Consensus 175 ~~~~~------~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~--~~~ 243 (391)
T 1l0q_A 175 ANFDS------MSISVIDTVTNSVIDTVK---VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI--PVG 243 (391)
T ss_dssp EETTT------TEEEEEETTTTEEEEEEE---CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE--ECC
T ss_pred EeCCC------CEEEEEECCCCeEEEEEe---cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEE--ecC
Confidence 65532 368999998875433221 1111112222 4554444443 3568999999876433221 122
Q ss_pred ccccCCeEEEE-eCC-EEEEEecCceeeeEEEEeccc
Q 040145 335 EQICKPFAVNA-CDC-RVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 335 ~~~~~~~~~~~-~~~-~i~v~GG~~~~~~~~v~~~~~ 369 (402)
....++.. .++ .||+.++.++. +..+|.
T Consensus 244 ---~~~~~~~~s~dg~~l~~s~~~d~~----v~v~d~ 273 (391)
T 1l0q_A 244 ---PDPAGIAVTPDGKKVYVALSFXNT----VSVIDT 273 (391)
T ss_dssp ---SSEEEEEECTTSSEEEEEETTTTE----EEEEET
T ss_pred ---CCccEEEEccCCCEEEEEcCCCCE----EEEEEC
Confidence 11223333 344 56677665433 455554
No 36
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=97.90 E-value=0.01 Score=51.87 Aligned_cols=222 Identities=11% Similarity=0.122 Sum_probs=119.5
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK 183 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t 183 (402)
++.+|+... ....+..||+. .......... .. .....+++..++.+|+.... ...+++||+.
T Consensus 25 ~g~l~v~~~----~~~~v~~~d~~-~~~~~~~~~~-~~----~~~~~i~~~~~g~l~v~~~~-------~~~i~~~~~~- 86 (299)
T 2z2n_A 25 KGKVWITQH----KANMISCINLD-GKITEYPLPT-PD----AKVMCLTISSDGEVWFTENA-------ANKIGRITKK- 86 (299)
T ss_dssp TSCEEEEET----TTTEEEEECTT-CCEEEEECSS-TT----CCEEEEEECTTSCEEEEETT-------TTEEEEECTT-
T ss_pred CCCEEEEec----CCCcEEEEcCC-CCeEEecCCc-cc----CceeeEEECCCCCEEEeCCC-------CCeEEEECCC-
Confidence 556776542 12347889988 6666543211 11 22233444346788887542 2368999986
Q ss_pred CceeecCCCc-ccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEE
Q 040145 184 NRWTVMNKMI-TARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVT 259 (402)
Q Consensus 184 ~~W~~~~~~~-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~ 259 (402)
++.+... ++ .......++.. ++.+|+.... ...+.+||+ ++....... +........... +|.+|+.
T Consensus 87 g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~-~g~~~~~~~-~~~~~~~~~i~~~~~g~l~v~ 157 (299)
T 2z2n_A 87 GIIKEYT-LPNPDSAPYGITEGPNGDIWFTEMN------GNRIGRITD-DGKIREYEL-PNKGSYPSFITLGSDNALWFT 157 (299)
T ss_dssp SCEEEEE-CSSTTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEEC-SSTTCCEEEEEECTTSCEEEE
T ss_pred CcEEEEe-CCCcCCCceeeEECCCCCEEEEecC------CceEEEECC-CCCEEEecC-CCCCCCCceEEEcCCCCEEEE
Confidence 5554432 11 11222334443 5788887643 356889999 666554421 111122223333 6788886
Q ss_pred cccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccc
Q 040145 260 EGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQI 337 (402)
Q Consensus 260 gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~ 337 (402)
... ...+.+||+ +++...+..+.... ....+.+ +|++|+... ....+.+||+ +.+...+. ++...
T Consensus 158 ~~~------~~~i~~~~~-~g~~~~~~~~~~~~-~~~~i~~~~~g~l~v~~~-~~~~i~~~~~-~g~~~~~~---~~~~~ 224 (299)
T 2z2n_A 158 ENQ------NNAIGRITE-SGDITEFKIPTPAS-GPVGITKGNDDALWFVEI-IGNKIGRITT-SGEITEFK---IPTPN 224 (299)
T ss_dssp ETT------TTEEEEECT-TCCEEEEECSSTTC-CEEEEEECTTSSEEEEET-TTTEEEEECT-TCCEEEEE---CSSTT
T ss_pred eCC------CCEEEEEcC-CCcEEEeeCCCCCC-cceeEEECCCCCEEEEcc-CCceEEEECC-CCcEEEEE---CCCCC
Confidence 532 236899999 77776542211111 1112333 578887643 2568999999 77766653 22111
Q ss_pred cCCeEEEE-eCCEEEEEecCceeeeEEEEeccc
Q 040145 338 CKPFAVNA-CDCRVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 338 ~~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~ 369 (402)
....+++. .+|+||+.....+ .+..+|+
T Consensus 225 ~~~~~i~~~~~g~l~v~~~~~~----~i~~~d~ 253 (299)
T 2z2n_A 225 ARPHAITAGAGIDLWFTEWGAN----KIGRLTS 253 (299)
T ss_dssp CCEEEEEECSTTCEEEEETTTT----EEEEEET
T ss_pred CCceeEEECCCCCEEEeccCCc----eEEEECC
Confidence 23334444 3678888763322 3666665
No 37
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.88 E-value=0.0032 Score=53.66 Aligned_cols=166 Identities=15% Similarity=0.102 Sum_probs=106.5
Q ss_pred cceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEe
Q 040145 197 SFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYD 276 (402)
Q Consensus 197 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd 276 (402)
...++...++.+|+..|..+ .+.+.++|++|++-..--+++....+.+.+..+++||+.... .+.+++||
T Consensus 22 ftqGL~~~~~~LyestG~~g----~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~------~~~v~v~D 91 (243)
T 3mbr_X 22 FTEGLFYLRGHLYESTGETG----RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR------NHEGFVYD 91 (243)
T ss_dssp CEEEEEEETTEEEEEECCTT----SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS------SSEEEEEE
T ss_pred ccccEEEECCEEEEECCCCC----CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee------CCEEEEEE
Confidence 33477778999999988644 467999999999876555666666677778889999998653 35899999
Q ss_pred CCCCCee-eccccccCCCceeE-EEECCEEEEEeccCCcEEEEEeCCCCcee-ecCCCCCCccccCCeEEEEeCCEEEEE
Q 040145 277 PSTDNWE-SMAVGLREGWTGSS-VVVYEHLFVVSELERMKLKVYDPSTDSWE-TIEGPPLPEQICKPFAVNACDCRVYVV 353 (402)
Q Consensus 277 ~~~~~W~-~~~~~~~~~~~~~~-~~~~~~l~~~gg~~~~~~~~yd~~~~~W~-~~~~~~~p~~~~~~~~~~~~~~~i~v~ 353 (402)
+++.+-. +++. .. .+.+ +.-+++||+.-| ...++.+|+++.+-. .+....-+......-.+...+|+||+-
T Consensus 92 ~~tl~~~~ti~~-~~---~Gwglt~dg~~L~vSdg--s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyan 165 (243)
T 3mbr_X 92 LATLTPRARFRY-PG---EGWALTSDDSHLYMSDG--TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLAN 165 (243)
T ss_dssp TTTTEEEEEEEC-SS---CCCEEEECSSCEEEECS--SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEE
T ss_pred CCcCcEEEEEeC-CC---CceEEeeCCCEEEEECC--CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEE
Confidence 9886533 2332 12 3334 334567887765 568999999987533 222101111112222344568998854
Q ss_pred ecCceeeeEEEEecccccccCceeeeEEEEeC
Q 040145 354 GRNLHVAVGHITRLSTSEKKWSFSVQWQVVDA 385 (402)
Q Consensus 354 GG~~~~~~~~v~~~~~~~~~~~~~~~W~~~~~ 385 (402)
--. .++|.+.||... +-..|..+..
T Consensus 166 vw~----s~~I~vIDp~tG---~V~~~idl~~ 190 (243)
T 3mbr_X 166 VWL----TSRIARIDPASG---KVVAWIDLQA 190 (243)
T ss_dssp ETT----TTEEEEECTTTC---BEEEEEECGG
T ss_pred ECC----CCeEEEEECCCC---CEEEEEECCc
Confidence 322 236888888665 4556666553
No 38
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.88 E-value=0.011 Score=51.70 Aligned_cols=223 Identities=14% Similarity=0.119 Sum_probs=120.8
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK 183 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t 183 (402)
++.+|+... ....+..||+. .+...+. ++... .....+++..++.+|+.... ...+.+||+.
T Consensus 30 ~g~l~v~~~----~~~~v~~~~~~-~~~~~~~-~~~~~----~~~~~i~~~~~g~l~v~~~~-------~~~v~~~d~~- 91 (300)
T 2qc5_A 30 DGKVWFTQH----KANKISSLDQS-GRIKEFE-VPTPD----AKVMCLIVSSLGDIWFTENG-------ANKIGKLSKK- 91 (300)
T ss_dssp TSCEEEEET----TTTEEEEECTT-SCEEEEE-CSSTT----CCEEEEEECTTSCEEEEETT-------TTEEEEECTT-
T ss_pred CCCEEEEcC----CCCeEEEECCC-CceEEEE-CCCCC----CcceeEEECCCCCEEEEecC-------CCeEEEECCC-
Confidence 566777642 22357889988 6665532 12110 12233444346788887542 2379999998
Q ss_pred CceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEc
Q 040145 184 NRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTE 260 (402)
Q Consensus 184 ~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~g 260 (402)
++++.............++.- ++++|+.... ...+..||+. ++..... ++........... +|++|+..
T Consensus 92 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~ 163 (300)
T 2qc5_A 92 GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLN------GDRIGKLTAD-GTIYEYD-LPNKGSYPAFITLGSDNALWFTE 163 (300)
T ss_dssp SCEEEEECSSTTCCEEEEEECSTTCEEEEETT------TTEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSSEEEEE
T ss_pred CCeEEecCCCCCCCCccceECCCCCEEEEccC------CCeEEEECCC-CCEEEcc-CCCCCCCceeEEECCCCCEEEEe
Confidence 766543211111222334433 5788887643 3568899987 6555432 2212222223333 57788865
Q ss_pred ccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCcccc
Q 040145 261 GWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQIC 338 (402)
Q Consensus 261 G~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~ 338 (402)
.. ...+.+||+ +++...+..+... .....+.+ +|.+|+... ....+.+||+ +.++.... ++....
T Consensus 164 ~~------~~~i~~~~~-~g~~~~~~~~~~~-~~~~~i~~d~~g~l~v~~~-~~~~i~~~~~-~g~~~~~~---~~~~~~ 230 (300)
T 2qc5_A 164 NQ------NNSIGRITN-TGKLEEYPLPTNA-AAPVGITSGNDGALWFVEI-MGNKIGRITT-TGEISEYD---IPTPNA 230 (300)
T ss_dssp TT------TTEEEEECT-TCCEEEEECSSTT-CCEEEEEECTTSSEEEEET-TTTEEEEECT-TCCEEEEE---CSSTTC
T ss_pred cC------CCeEEEECC-CCcEEEeeCCCCC-CCcceEEECCCCCEEEEcc-CCCEEEEEcC-CCcEEEEE---CCCCCC
Confidence 32 236899998 6666654321111 11122333 678887643 3557999999 55565543 221112
Q ss_pred CCeEEEE-eCCEEEEEecCceeeeEEEEeccc
Q 040145 339 KPFAVNA-CDCRVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 339 ~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~ 369 (402)
...+++. .+|+||+.....+ .+..|++
T Consensus 231 ~~~~i~~d~~g~l~v~~~~~~----~i~~~~~ 258 (300)
T 2qc5_A 231 RPHAITAGKNSEIWFTEWGAN----QIGRITN 258 (300)
T ss_dssp CEEEEEECSTTCEEEEETTTT----EEEEECT
T ss_pred CceEEEECCCCCEEEeccCCC----eEEEECC
Confidence 3344444 3678888774322 3677776
No 39
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.86 E-value=0.014 Score=52.38 Aligned_cols=232 Identities=12% Similarity=0.011 Sum_probs=116.5
Q ss_pred CCeEEEEEEeCC--CCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEEC
Q 040145 104 DPWLFVFAFHKC--TGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEM 181 (402)
Q Consensus 104 ~~~l~~~gg~~~--~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~ 181 (402)
+..+|+...... .....++++|+.+.+....-+... ...+.+....++.+|+.+.. ...+.+||+
T Consensus 52 g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~v~~~~-------~~~v~~~d~ 118 (353)
T 3vgz_A 52 ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL------KPFGATINNTTQTLWFGNTV-------NSAVTAIDA 118 (353)
T ss_dssp TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS------CCCSEEEETTTTEEEEEETT-------TTEEEEEET
T ss_pred CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC------CcceEEECCCCCEEEEEecC-------CCEEEEEeC
Confidence 567777653211 124568899998876433222221 11233443334568887654 237999999
Q ss_pred CCCceeecCCCccc--------ccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEE
Q 040145 182 QKNRWTVMNKMITA--------RSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAV 251 (402)
Q Consensus 182 ~t~~W~~~~~~~~~--------r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~ 251 (402)
.+++-...-+.... .....++.. ++.+|+.+... ...+++||+.+.+-...-+... ......+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~ 192 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKTAIQNTG-KMSTGLAL 192 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEEEECCCC-TTCCCCEE
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEEEecCCC-CccceEEE
Confidence 98864322111111 112334443 35677776321 3568999998876433211111 11112222
Q ss_pred -ECC-EEEEEcccccCCccCCcEEEEeCCCCCeeec-cccc--cCCCceeEEE-ECC-EEEEEeccCCcEEEEEeCCCCc
Q 040145 252 -LDG-KLLVTEGWLWPFFVSPRGQVYDPSTDNWESM-AVGL--REGWTGSSVV-VYE-HLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 252 -~~g-~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~-~~~~--~~~~~~~~~~-~~~-~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
-+| .+|+... ...+.+||+.+++-... .... +.......+. -++ .+|+. ......+.+||+.+.+
T Consensus 193 s~dg~~l~~~~~-------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~~~~v~~~d~~~~~ 264 (353)
T 3vgz_A 193 DSEGKRLYTTNA-------DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT-DSKAAEVLVVDTRNGN 264 (353)
T ss_dssp ETTTTEEEEECT-------TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE-ESSSSEEEEEETTTCC
T ss_pred CCCCCEEEEEcC-------CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE-eCCCCEEEEEECCCCc
Confidence 244 4666543 13688999988753322 1111 1111111222 244 46655 4446789999998876
Q ss_pred eeecCCCCCCccccCCeEEEEeC-CEEEEEecCceeeeEEEEeccccc
Q 040145 325 WETIEGPPLPEQICKPFAVNACD-CRVYVVGRNLHVAVGHITRLSTSE 371 (402)
Q Consensus 325 W~~~~~~~~p~~~~~~~~~~~~~-~~i~v~GG~~~~~~~~v~~~~~~~ 371 (402)
....- +.+. .. ......+ +.+|+.+...+ .+..+|...
T Consensus 265 ~~~~~--~~~~--~~-~~~~s~dg~~l~v~~~~~~----~v~~~d~~~ 303 (353)
T 3vgz_A 265 ILAKV--AAPE--SL-AVLFNPARNEAYVTHRQAG----KVSVIDAKS 303 (353)
T ss_dssp EEEEE--ECSS--CC-CEEEETTTTEEEEEETTTT----EEEEEETTT
T ss_pred EEEEE--EcCC--Cc-eEEECCCCCEEEEEECCCC----eEEEEECCC
Confidence 54332 2322 11 2222334 45788775443 366666543
No 40
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.81 E-value=0.011 Score=52.26 Aligned_cols=209 Identities=12% Similarity=0.124 Sum_probs=105.1
Q ss_pred EEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccc-e
Q 040145 121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSF-F 199 (402)
Q Consensus 121 ~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~-~ 199 (402)
+.+||..+.+....-.-. . .....+....++.+++.|+.+ ..+.+||..+++-... +...... .
T Consensus 47 i~iw~~~~~~~~~~~~~h--~----~~v~~~~~~~~~~~l~s~~~d-------~~i~vwd~~~~~~~~~--~~~~~~~v~ 111 (312)
T 4ery_A 47 IKIWGAYDGKFEKTISGH--K----LGISDVAWSSDSNLLVSASDD-------KTLKIWDVSSGKCLKT--LKGHSNYVF 111 (312)
T ss_dssp EEEEETTTCCEEEEECCC--S----SCEEEEEECTTSSEEEEEETT-------SEEEEEETTTCCEEEE--EECCSSCEE
T ss_pred EEEEeCCCcccchhhccC--C----CceEEEEEcCCCCEEEEECCC-------CEEEEEECCCCcEEEE--EcCCCCCEE
Confidence 667787776654321111 0 223444554567777777752 2789999988753221 1111111 1
Q ss_pred EEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEe
Q 040145 200 ASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYD 276 (402)
Q Consensus 200 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd 276 (402)
.+... ++.+++.|+. ...+.+||..+++-... ++........+.+ ++.+++.|+.+ ..+..||
T Consensus 112 ~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~~wd 177 (312)
T 4ery_A 112 CCNFNPQSNLIVSGSF------DESVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYD------GLCRIWD 177 (312)
T ss_dssp EEEECSSSSEEEEEET------TSCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETT------SCEEEEE
T ss_pred EEEEcCCCCEEEEEeC------CCcEEEEECCCCEEEEE--ecCCCCcEEEEEEcCCCCEEEEEeCC------CcEEEEE
Confidence 22222 4566666765 34688999987653221 2211122222333 66777777653 3688999
Q ss_pred CCCCCeeeccccccCCCceeE-EEECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEec
Q 040145 277 PSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGR 355 (402)
Q Consensus 277 ~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG 355 (402)
+.+++-...-........... ..-+++.++.|+. ...+.+||..+.+-...-.................++.+++.|+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~ 256 (312)
T 4ery_A 178 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 256 (312)
T ss_dssp TTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET-TTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECC
T ss_pred CCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC-CCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEEC
Confidence 987654321110111111111 1225666666665 56899999987653322100111111111223335677788887
Q ss_pred Ccee
Q 040145 356 NLHV 359 (402)
Q Consensus 356 ~~~~ 359 (402)
.++.
T Consensus 257 ~dg~ 260 (312)
T 4ery_A 257 EDNL 260 (312)
T ss_dssp TTSC
T ss_pred CCCE
Confidence 6554
No 41
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.78 E-value=0.016 Score=50.64 Aligned_cols=220 Identities=11% Similarity=0.071 Sum_probs=117.9
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK 183 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t 183 (402)
++.+|+... ....+..||+. .+...+.. +... ......++..++.+|+.... ...+++||+.
T Consensus 72 ~g~l~v~~~----~~~~v~~~d~~-g~~~~~~~-~~~~----~~~~~i~~~~~g~l~v~~~~-------~~~i~~~~~~- 133 (300)
T 2qc5_A 72 LGDIWFTEN----GANKIGKLSKK-GGFTEYPL-PQPD----SGPYGITEGLNGDIWFTQLN-------GDRIGKLTAD- 133 (300)
T ss_dssp TSCEEEEET----TTTEEEEECTT-SCEEEEEC-SSTT----CCEEEEEECSTTCEEEEETT-------TTEEEEECTT-
T ss_pred CCCEEEEec----CCCeEEEECCC-CCeEEecC-CCCC----CCCccceECCCCCEEEEccC-------CCeEEEECCC-
Confidence 566777642 22347889988 66654321 1111 22233444346788887542 2378999998
Q ss_pred CceeecCCCcc-cccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEE
Q 040145 184 NRWTVMNKMIT-ARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVT 259 (402)
Q Consensus 184 ~~W~~~~~~~~-~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~ 259 (402)
++..... ++. ......++. -++++|+.... ...+.+||+ +++..... .+........... +|.||+.
T Consensus 134 g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~ 204 (300)
T 2qc5_A 134 GTIYEYD-LPNKGSYPAFITLGSDNALWFTENQ------NNSIGRITN-TGKLEEYP-LPTNAAAPVGITSGNDGALWFV 204 (300)
T ss_dssp SCEEEEE-CSSTTCCEEEEEECTTSSEEEEETT------TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECTTSSEEEE
T ss_pred CCEEEcc-CCCCCCCceeEEECCCCCEEEEecC------CCeEEEECC-CCcEEEee-CCCCCCCcceEEECCCCCEEEE
Confidence 6655432 111 122233333 25678887542 356899999 66666542 2222222333333 6788886
Q ss_pred cccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccc
Q 040145 260 EGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQI 337 (402)
Q Consensus 260 gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~ 337 (402)
... ...+.+||+ ++++.....+... .....+.+ +|+||+... ..+.+.+||+ +.+..... ++...
T Consensus 205 ~~~------~~~i~~~~~-~g~~~~~~~~~~~-~~~~~i~~d~~g~l~v~~~-~~~~i~~~~~-~g~~~~~~---~~~~~ 271 (300)
T 2qc5_A 205 EIM------GNKIGRITT-TGEISEYDIPTPN-ARPHAITAGKNSEIWFTEW-GANQIGRITN-DNTIQEYQ---LQTEN 271 (300)
T ss_dssp ETT------TTEEEEECT-TCCEEEEECSSTT-CCEEEEEECSTTCEEEEET-TTTEEEEECT-TSCEEEEE---CCSTT
T ss_pred ccC------CCEEEEEcC-CCcEEEEECCCCC-CCceEEEECCCCCEEEecc-CCCeEEEECC-CCcEEEEE---CCccC
Confidence 532 236899998 6666554321111 11122333 678887653 3568999999 45555543 22111
Q ss_pred cCCeEEEE-eCCEEEEEecCceeeeEEEEeccc
Q 040145 338 CKPFAVNA-CDCRVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 338 ~~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~ 369 (402)
....+++. .+|+||+.+. . .+..|||
T Consensus 272 ~~~~~i~~~~~g~l~v~~~-~-----~i~~~~p 298 (300)
T 2qc5_A 272 AEPHGITFGKDGSVWFALK-C-----KIGKLNL 298 (300)
T ss_dssp CCCCCEEECTTSCEEEECS-S-----EEEEEEE
T ss_pred CccceeEeCCCCCEEEEcc-C-----ceEEeCC
Confidence 22344444 4678887664 2 3666665
No 42
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.77 E-value=0.0043 Score=56.33 Aligned_cols=233 Identities=8% Similarity=0.040 Sum_probs=112.6
Q ss_pred CeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccC--CEEEEEeCccCCCCCCCceEEEEECC
Q 040145 105 PWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPRE--GTLFVCGGMVSDVDCPLDLVLKYEMQ 182 (402)
Q Consensus 105 ~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~--~~i~v~GG~~~~~~~~~~~~~~~d~~ 182 (402)
+.+++.++.+. .+.+||....++..+..+.... ....++....+ +.+++.|+.+ ..+.+||..
T Consensus 23 ~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~l~s~~~d-------g~v~iwd~~ 87 (379)
T 3jrp_A 23 GKRLATCSSDK----TIKIFEVEGETHKLIDTLTGHE----GPVWRVDWAHPKFGTILASCSYD-------GKVLIWKEE 87 (379)
T ss_dssp SSEEEEEETTS----CEEEEEEETTEEEEEEEECCCS----SCEEEEEECCGGGCSEEEEEETT-------SCEEEEEEE
T ss_pred CCEEEEEECCC----cEEEEecCCCcceeeeEecCCC----CcEEEEEeCCCCCCCEEEEeccC-------CEEEEEEcC
Confidence 44444554332 2677777766655443333111 22233343223 6677777652 268999999
Q ss_pred CCceeecCCCcccccce-EEEEE-C--CEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE------
Q 040145 183 KNRWTVMNKMITARSFF-ASGVI-G--GMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL------ 252 (402)
Q Consensus 183 t~~W~~~~~~~~~r~~~-~~~~~-~--~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~------ 252 (402)
+++|..+..+....... ++... + +.+++.|+. ...+.+||..+..-.....+.........+.+
T Consensus 88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 88 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS------DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET------TSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred CCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecC------CCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 99876654443222222 23332 2 556666665 45688888877632111001111111111211
Q ss_pred ---------CCEEEEEcccccCCccCCcEEEEeCCCCC--eeeccccccCCCceeEEEE--C---CEEEEEeccCCcEEE
Q 040145 253 ---------DGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WESMAVGLREGWTGSSVVV--Y---EHLFVVSELERMKLK 316 (402)
Q Consensus 253 ---------~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~--~---~~l~~~gg~~~~~~~ 316 (402)
++.+++.|+.+ ..+..||+.++. +..+.........-..+.+ + +.+++.|+. ...+.
T Consensus 162 ~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~-dg~i~ 234 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGAD------NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ-DRTCI 234 (379)
T ss_dssp --------CTTCEEEEEETT------SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET-TSCEE
T ss_pred ccccccCCCCCCEEEEEeCC------CeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC-CCEEE
Confidence 46777777653 268888886553 4433321111111112233 3 677777775 44678
Q ss_pred EEeCCCCc--eeecCCCCCCccccCCeEEE-EeCCEEEEEecCceeeeEEEEecc
Q 040145 317 VYDPSTDS--WETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLHVAVGHITRLS 368 (402)
Q Consensus 317 ~yd~~~~~--W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~~~~~v~~~~ 368 (402)
+||..+.. +..... ..........++. ..++++++.|+.+.. ..+|.++
T Consensus 235 iwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~~dg~--i~iw~~~ 286 (379)
T 3jrp_A 235 IWTQDNEQGPWKKTLL-KEEKFPDVLWRASWSLSGNVLALSGGDNK--VTLWKEN 286 (379)
T ss_dssp EEEESSTTSCCEEEES-SSSCCSSCEEEEEECSSSCCEEEEESSSS--EEEEEEE
T ss_pred EEeCCCCCccceeeee-ccccCCCcEEEEEEcCCCCEEEEecCCCc--EEEEeCC
Confidence 88877653 211110 1110101112222 357777777776433 3455544
No 43
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.75 E-value=0.0021 Score=59.00 Aligned_cols=184 Identities=17% Similarity=0.141 Sum_probs=99.4
Q ss_pred eEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEEECCCC
Q 040145 106 WLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQKN 184 (402)
Q Consensus 106 ~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~t~ 184 (402)
.+|+.+.. ...+.++|..+++-...-... ....++++..++ .||+.++.+ ..+.+||..++
T Consensus 3 ~l~vs~~~----d~~v~v~d~~~~~~~~~~~~~-------~~~~~~~~s~dg~~l~~~~~~d-------~~i~v~d~~~~ 64 (391)
T 1l0q_A 3 FAYIANSE----SDNISVIDVTSNKVTATIPVG-------SNPMGAVISPDGTKVYVANAHS-------NDVSIIDTATN 64 (391)
T ss_dssp EEEEEETT----TTEEEEEETTTTEEEEEEECS-------SSEEEEEECTTSSEEEEEEGGG-------TEEEEEETTTT
T ss_pred EEEEEcCC----CCEEEEEECCCCeEEEEeecC-------CCcceEEECCCCCEEEEECCCC-------CeEEEEECCCC
Confidence 45665532 334888998887654322111 112334443344 577777542 37999999988
Q ss_pred ceeecCCCcccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE-CC-EEEEEc
Q 040145 185 RWTVMNKMITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL-DG-KLLVTE 260 (402)
Q Consensus 185 ~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g-~ly~~g 260 (402)
+....-.. ......++.. +..||+.+.. ...+.+||..+++-...-.. .......+.. ++ .+|+.+
T Consensus 65 ~~~~~~~~--~~~v~~~~~spdg~~l~~~~~~------~~~v~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~ 134 (391)
T 1l0q_A 65 NVIATVPA--GSSPQGVAVSPDGKQVYVTNMA------SSTLSVIDTTSNTVAGTVKT--GKSPLGLALSPDGKKLYVTN 134 (391)
T ss_dssp EEEEEEEC--SSSEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEE
T ss_pred eEEEEEEC--CCCccceEECCCCCEEEEEECC------CCEEEEEECCCCeEEEEEeC--CCCcceEEECCCCCEEEEEe
Confidence 65432221 1222233333 3457776653 36799999998875433221 1111222222 44 466766
Q ss_pred ccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CC-EEEEEeccCCcEEEEEeCCCCceee
Q 040145 261 GWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YE-HLFVVSELERMKLKVYDPSTDSWET 327 (402)
Q Consensus 261 G~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~-~l~~~gg~~~~~~~~yd~~~~~W~~ 327 (402)
+.. ..+.+||+.+++....-. ... ....+.+ ++ .+|+.++. ...+.+||..+.+-..
T Consensus 135 ~~~------~~v~~~d~~~~~~~~~~~-~~~--~~~~~~~~~dg~~l~~~~~~-~~~v~~~d~~~~~~~~ 194 (391)
T 1l0q_A 135 NGD------KTVSVINTVTKAVINTVS-VGR--SPKGIAVTPDGTKVYVANFD-SMSISVIDTVTNSVID 194 (391)
T ss_dssp TTT------TEEEEEETTTTEEEEEEE-CCS--SEEEEEECTTSSEEEEEETT-TTEEEEEETTTTEEEE
T ss_pred CCC------CEEEEEECCCCcEEEEEe-cCC--CcceEEECCCCCEEEEEeCC-CCEEEEEECCCCeEEE
Confidence 532 378999998876543322 111 1122222 44 45555443 5689999998875443
No 44
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=97.68 E-value=0.0081 Score=51.84 Aligned_cols=190 Identities=15% Similarity=0.153 Sum_probs=98.4
Q ss_pred EEEEccCCEEEE-EeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEE
Q 040145 150 CVSIPREGTLFV-CGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVL 227 (402)
Q Consensus 150 ~~~~~~~~~i~v-~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~y 227 (402)
.+++..++.+|+ .... ...+.+||+.+......+.... ....+++.. ++++|+... ...+.+|
T Consensus 28 ~i~~~~~g~l~v~~~~~-------~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~-------~~~i~~~ 92 (270)
T 1rwi_B 28 GVAVDSAGNVYVTSEGM-------YGRVVKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDF-------NNRVVTL 92 (270)
T ss_dssp EEEECTTCCEEEEECSS-------SCEEEEECC-----EECCCCSC-CSCCCEEECTTCCEEEEET-------TTEEEEE
T ss_pred ceEECCCCCEEEEccCC-------CCcEEEecCCCcccceEeeCCc-CCcceeEECCCCCEEEEcC-------CCEEEEE
Confidence 344434678888 4332 3478899988776544332111 122333333 567888764 2468899
Q ss_pred cCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEE
Q 040145 228 DPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLF 305 (402)
Q Consensus 228 d~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~ 305 (402)
|+.+.....+.... ........+ +|.+|+.... ...+.+||..+.............-.+.+..-+|++|
T Consensus 93 d~~~~~~~~~~~~~--~~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~ 164 (270)
T 1rwi_B 93 AAGSNNQTVLPFDG--LNYPEGLAVDTQGAVYVADRG------NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVY 164 (270)
T ss_dssp CTTCSCCEECCCCS--CSSEEEEEECTTCCEEEEEGG------GTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEE
T ss_pred eCCCceEeeeecCC--cCCCcceEECCCCCEEEEECC------CCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEE
Confidence 99877655442111 112222333 6788887543 1368888876655443321110111111222367888
Q ss_pred EEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE-eCCEEEEEecCceeeeEEEEeccccc
Q 040145 306 VVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA-CDCRVYVVGRNLHVAVGHITRLSTSE 371 (402)
Q Consensus 306 ~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~~~ 371 (402)
+.... ...+.+||+.+..-.......+ ....+++. .+|.||+.....+. +..+++..
T Consensus 165 v~~~~-~~~i~~~~~~~~~~~~~~~~~~----~~p~~i~~d~~g~l~v~~~~~~~----v~~~~~~~ 222 (270)
T 1rwi_B 165 VTDTD-NNRVVKLEAESNNQVVLPFTDI----TAPWGIAVDEAGTVYVTEHNTNQ----VVKLLAGS 222 (270)
T ss_dssp EEEGG-GTEEEEECTTTCCEEECCCSSC----CSEEEEEECTTCCEEEEETTTSC----EEEECTTC
T ss_pred EEECC-CCEEEEEecCCCceEeecccCC----CCceEEEECCCCCEEEEECCCCc----EEEEcCCC
Confidence 77543 5689999998765443321111 22334554 35689988754433 67776543
No 45
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=97.66 E-value=0.016 Score=54.04 Aligned_cols=220 Identities=11% Similarity=0.042 Sum_probs=118.0
Q ss_pred eeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccc
Q 040145 119 IQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSF 198 (402)
Q Consensus 119 ~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~ 198 (402)
..++++|.....-..+..-. .......+..+++.+++++.+. ....++++|..+++.+.+...+. ..
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~-------~~v~~~~~Spdg~~la~~s~~~----~~~~i~~~d~~tg~~~~l~~~~~--~~ 225 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSP-------QPLMSPAWSPDGSKLAYVTFES----GRSALVIQTLANGAVRQVASFPR--HN 225 (415)
T ss_dssp EEEEEEETTSCSCEEEEEES-------SCEEEEEECTTSSEEEEEECTT----SSCEEEEEETTTCCEEEEECCSS--CE
T ss_pred ceEEEEcCCCCCCEEEeCCC-------CcceeeEEcCCCCEEEEEEecC----CCcEEEEEECCCCcEEEeecCCC--cc
Confidence 57888888765444332211 1233444444665555555421 23589999999988766543321 12
Q ss_pred eEEEEE-CC-EEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEE
Q 040145 199 FASGVI-GG-MIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQV 274 (402)
Q Consensus 199 ~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~ 274 (402)
...+.. ++ .|++.+..++ ...++++|..++....+.... .......+ +|+.+++++..+. ...++.
T Consensus 226 ~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~~~~l~~~~---~~~~~~~~spdg~~l~~~s~~~g---~~~i~~ 295 (415)
T 2hqs_A 226 GAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGR---SNNTEPTWFPDSQNLAFTSDQAG---RPQVYK 295 (415)
T ss_dssp EEEEECTTSSEEEEEECTTS----SCEEEEEETTTCCEEECCCCS---SCEEEEEECTTSSEEEEEECTTS---SCEEEE
T ss_pred cCEEEcCCCCEEEEEEecCC----CceEEEEECCCCCEEeCcCCC---CcccceEECCCCCEEEEEECCCC---CcEEEE
Confidence 233332 34 4555554332 456999999998876654322 11222222 6664444432111 236889
Q ss_pred EeCCCCCeeeccccccCCCceeEEE--ECCEEEEEeccC--CcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEE
Q 040145 275 YDPSTDNWESMAVGLREGWTGSSVV--VYEHLFVVSELE--RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRV 350 (402)
Q Consensus 275 yd~~~~~W~~~~~~~~~~~~~~~~~--~~~~l~~~gg~~--~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i 350 (402)
+|+.+++-..+.. .......+. -+|+.+++++.. ...++++|..+.+...+.. .. .........+++.
T Consensus 296 ~d~~~~~~~~l~~---~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~--~~---~~~~~~~spdg~~ 367 (415)
T 2hqs_A 296 VNINGGAPQRITW---EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSS--TF---LDETPSLAPNGTM 367 (415)
T ss_dssp EETTSSCCEECCC---SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCC--SS---SCEEEEECTTSSE
T ss_pred EECCCCCEEEEec---CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecC--CC---CcCCeEEcCCCCE
Confidence 9998877554432 111111222 366655555543 3589999999988766542 11 1222233456776
Q ss_pred EEEecCceeeeEEEEecccc
Q 040145 351 YVVGRNLHVAVGHITRLSTS 370 (402)
Q Consensus 351 ~v~GG~~~~~~~~v~~~~~~ 370 (402)
+++++.... ...++.+|..
T Consensus 368 l~~~s~~~~-~~~l~~~d~~ 386 (415)
T 2hqs_A 368 VIYSSSQGM-GSVLNLVSTD 386 (415)
T ss_dssp EEEEEEETT-EEEEEEEETT
T ss_pred EEEEEcCCC-ccEEEEEECC
Confidence 666654322 3467777653
No 46
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.60 E-value=0.0066 Score=52.19 Aligned_cols=163 Identities=13% Similarity=0.047 Sum_probs=101.0
Q ss_pred eEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCC
Q 040145 199 FASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPS 278 (402)
Q Consensus 199 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~ 278 (402)
.+....++.+|+..|..+ .+.+.++|++|++-..--+++...++.+.+..+++||+.... .+.+++||++
T Consensus 46 qGL~~~~~~LyestG~~g----~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~------~~~v~v~D~~ 115 (262)
T 3nol_A 46 EGFFYRNGYFYESTGLNG----RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWK------NGLGFVWNIR 115 (262)
T ss_dssp EEEEEETTEEEEEEEETT----EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS------SSEEEEEETT
T ss_pred ceEEEECCEEEEECCCCC----CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEee------CCEEEEEECc
Confidence 455666899999988643 457999999999865444555555566677789999998653 3579999998
Q ss_pred CCCee-eccccccCCCceeEEEE-CCEEEEEeccCCcEEEEEeCCCCcee-ecCCCCCCccccCCeEEEEeCCEEEEEec
Q 040145 279 TDNWE-SMAVGLREGWTGSSVVV-YEHLFVVSELERMKLKVYDPSTDSWE-TIEGPPLPEQICKPFAVNACDCRVYVVGR 355 (402)
Q Consensus 279 ~~~W~-~~~~~~~~~~~~~~~~~-~~~l~~~gg~~~~~~~~yd~~~~~W~-~~~~~~~p~~~~~~~~~~~~~~~i~v~GG 355 (402)
+.+-. +++. .+ .+..+.. ++++|+.-| .+.++.+|+++.+-. .+....-+......-.+...+|+||+---
T Consensus 116 t~~~~~ti~~-~~---eG~glt~dg~~L~~SdG--s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w 189 (262)
T 3nol_A 116 NLRQVRSFNY-DG---EGWGLTHNDQYLIMSDG--TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVW 189 (262)
T ss_dssp TCCEEEEEEC-SS---CCCCEEECSSCEEECCS--SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEET
T ss_pred cCcEEEEEEC-CC---CceEEecCCCEEEEECC--CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEc
Confidence 87643 3332 12 3333334 556777655 568999999986533 23210011111111124445899886332
Q ss_pred CceeeeEEEEecccccccCceeeeEEEEe
Q 040145 356 NLHVAVGHITRLSTSEKKWSFSVQWQVVD 384 (402)
Q Consensus 356 ~~~~~~~~v~~~~~~~~~~~~~~~W~~~~ 384 (402)
. .++|.+.||... +-..|..+.
T Consensus 190 ~----~~~I~vIDp~tG---~V~~~Id~~ 211 (262)
T 3nol_A 190 Q----TNKIVRIDPETG---KVTGIIDLN 211 (262)
T ss_dssp T----SSEEEEECTTTC---BEEEEEECT
T ss_pred c----CCeEEEEECCCC---cEEEEEECC
Confidence 1 346889998665 445666654
No 47
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.60 E-value=0.01 Score=53.03 Aligned_cols=183 Identities=11% Similarity=0.081 Sum_probs=93.5
Q ss_pred eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceee-cCCCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEE
Q 040145 149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTV-MNKMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEV 226 (402)
Q Consensus 149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~-~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~ 226 (402)
.++.+..++.+++.|+.+ ..+.+||..+++-.. +..-+. ....++. -+++.++.|+. ...+.+
T Consensus 84 ~~~~~~~~~~~l~s~s~D-------~~i~lWd~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~g~~------dg~v~i 148 (321)
T 3ow8_A 84 VSVDISHTLPIAASSSLD-------AHIRLWDLENGKQIKSIDAGPV--DAWTLAFSPDSQYLATGTH------VGKVNI 148 (321)
T ss_dssp EEEEECSSSSEEEEEETT-------SEEEEEETTTTEEEEEEECCTT--CCCCEEECTTSSEEEEECT------TSEEEE
T ss_pred EEEEECCCCCEEEEEeCC-------CcEEEEECCCCCEEEEEeCCCc--cEEEEEECCCCCEEEEEcC------CCcEEE
Confidence 344444456677777752 278899998875322 211111 1112222 25566677765 456888
Q ss_pred EcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEE
Q 040145 227 LDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHL 304 (402)
Q Consensus 227 yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l 304 (402)
||..+..-... +.........+.+ ++++++.|+.+ ..+..||+.+++-...-......-......-++.+
T Consensus 149 ~~~~~~~~~~~--~~~~~~~v~~~~~spdg~~lasg~~d------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~ 220 (321)
T 3ow8_A 149 FGVESGKKEYS--LDTRGKFILSIAYSPDGKYLASGAID------GIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQL 220 (321)
T ss_dssp EETTTCSEEEE--EECSSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCE
T ss_pred EEcCCCceeEE--ecCCCceEEEEEECCCCCEEEEEcCC------CeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCE
Confidence 88887653221 1111111222222 67777777753 36889999876532211101111111112226777
Q ss_pred EEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEE-EeCCEEEEEecCcee
Q 040145 305 FVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLHV 359 (402)
Q Consensus 305 ~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~ 359 (402)
++.|+. ...+.+||..+...... +......-.+++ ..+++.++.|+.+..
T Consensus 221 l~s~s~-dg~i~iwd~~~~~~~~~----~~~h~~~v~~~~~sp~~~~l~s~s~D~~ 271 (321)
T 3ow8_A 221 LVTASD-DGYIKIYDVQHANLAGT----LSGHASWVLNVAFCPDDTHFVSSSSDKS 271 (321)
T ss_dssp EEEECT-TSCEEEEETTTCCEEEE----ECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEcC-CCeEEEEECCCcceeEE----EcCCCCceEEEEECCCCCEEEEEeCCCc
Confidence 777765 45799999987654322 111101112232 246777788876544
No 48
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.58 E-value=0.043 Score=51.44 Aligned_cols=183 Identities=10% Similarity=0.065 Sum_probs=97.2
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcE
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNW 234 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 234 (402)
++.+++.|+.+ ..+.+||..+++-...-.. ....-.+++.. ++..++.|+. ...+.+||..+++-
T Consensus 279 ~~~~l~~~~~d-------~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~------dg~i~vwd~~~~~~ 344 (464)
T 3v7d_B 279 HGNIVVSGSYD-------NTLIVWDVAQMKCLYILSG-HTDRIYSTIYDHERKRCISASM------DTTIRIWDLENGEL 344 (464)
T ss_dssp ETTEEEEEETT-------SCEEEEETTTTEEEEEECC-CSSCEEEEEEETTTTEEEEEET------TSCEEEEETTTTEE
T ss_pred CCCEEEEEeCC-------CeEEEEECCCCcEEEEecC-CCCCEEEEEEcCCCCEEEEEeC------CCcEEEEECCCCcE
Confidence 55666666652 2689999987653221111 11112223332 4556666665 34688999987653
Q ss_pred EEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcE
Q 040145 235 RTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMK 314 (402)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~ 314 (402)
.. .+............++..++.|+.+ ..+.+||+.+..-..... ............++.+++.|+ ...
T Consensus 345 ~~--~~~~h~~~v~~~~~~~~~l~s~s~d------g~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~--dg~ 413 (464)
T 3v7d_B 345 MY--TLQGHTALVGLLRLSDKFLVSAAAD------GSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS--ENQ 413 (464)
T ss_dssp EE--EECCCSSCEEEEEECSSEEEEEETT------SEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE--TTE
T ss_pred EE--EEeCCCCcEEEEEEcCCEEEEEeCC------CcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec--CCe
Confidence 22 2222223334455567777777653 368899998754221111 111122223456778777776 358
Q ss_pred EEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEe
Q 040145 315 LKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITR 366 (402)
Q Consensus 315 ~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~ 366 (402)
+.+||..+.+-.... ..+.. ..-.++...++.+++.++.+......+++
T Consensus 414 i~iwd~~~g~~~~~~--~~~~~-~~v~~v~~~~~~l~~~~~~~g~~~i~~ld 462 (464)
T 3v7d_B 414 FNIYNLRSGKLVHAN--ILKDA-DQIWSVNFKGKTLVAAVEKDGQSFLEILD 462 (464)
T ss_dssp EEEEETTTCCEEESC--TTTTC-SEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred EEEEECCCCcEEehh--hccCC-CcEEEEEecCCEEEEEEEeCCeEEEEEee
Confidence 999999887654421 12211 22224444566666666655444444443
No 49
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=97.57 E-value=0.019 Score=50.24 Aligned_cols=241 Identities=10% Similarity=0.027 Sum_probs=123.4
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCc--EEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEEC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYC--WHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEM 181 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~--W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~ 181 (402)
.+.+++.+ .....+.++|+.+.+ |+.-..-. . ..+..... .++.|++.+. +.++.||+
T Consensus 4 ~~~~lv~~----~~~~~v~~~d~~tG~~~w~~~~~~~--~----~~~~~~~~-pdG~ilvs~~---------~~V~~~d~ 63 (276)
T 3no2_A 4 PQHLLVGG----SGWNKIAIINKDTKEIVWEYPLEKG--W----ECNSVAAT-KAGEILFSYS---------KGAKMITR 63 (276)
T ss_dssp CCEEEEEC----TTCSEEEEEETTTTEEEEEEECCTT--C----CCCEEEEC-TTSCEEEECB---------SEEEEECT
T ss_pred CCcEEEee----CCCCEEEEEECCCCeEEEEeCCCcc--C----CCcCeEEC-CCCCEEEeCC---------CCEEEECC
Confidence 34566665 334458899997776 65432110 0 22333443 4778888431 26999999
Q ss_pred CCCc--eeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCc-EEEc--CCCCCC--CcceeEEEEC
Q 040145 182 QKNR--WTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGN-WRTI--ASMGTN--MASYDAAVLD 253 (402)
Q Consensus 182 ~t~~--W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~--~~~~~~--~~~~~~~~~~ 253 (402)
+++ |+.-.+ .....+++... ++++++....+ ...++.+|+.-+. |+.. ...+.. .........+
T Consensus 64 -~G~~~W~~~~~--~~~~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~ 135 (276)
T 3no2_A 64 -DGRELWNIAAP--AGCEMQTARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKK 135 (276)
T ss_dssp -TSCEEEEEECC--TTCEEEEEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTT
T ss_pred -CCCEEEEEcCC--CCccccccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCC
Confidence 664 665432 11122333333 56666654321 2457888885432 4432 111111 1111233346
Q ss_pred CEEEEEcccccCCccCCcEEEEeCCCC-CeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCC--ceeecCC
Q 040145 254 GKLLVTEGWLWPFFVSPRGQVYDPSTD-NWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTD--SWETIEG 330 (402)
Q Consensus 254 g~ly~~gG~~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~--~W~~~~~ 330 (402)
|.+++.... ...+.+||++-+ .|+.-.. ..-+......+|.+++++.. ...+..+|+++. .|+.-..
T Consensus 136 G~~lv~~~~------~~~v~~~d~~G~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~-~~~v~~~d~~tG~~~w~~~~~ 205 (276)
T 3no2_A 136 GNYLVPLFA------TSEVREIAPNGQLLNSVKLS---GTPFSSAFLDNGDCLVACGD-AHCFVQLNLESNRIVRRVNAN 205 (276)
T ss_dssp SCEEEEETT------TTEEEEECTTSCEEEEEECS---SCCCEEEECTTSCEEEECBT-TSEEEEECTTTCCEEEEEEGG
T ss_pred CCEEEEecC------CCEEEEECCCCCEEEEEECC---CCccceeEcCCCCEEEEeCC-CCeEEEEeCcCCcEEEEecCC
Confidence 777665442 247899999722 3664332 11122223447888877554 557999999965 3665321
Q ss_pred CCCCc-cccCCeE-EEEeCCEEEEEe--cCce----eeeEEEEecccccccCceeeeEEEEeCCCCC
Q 040145 331 PPLPE-QICKPFA-VNACDCRVYVVG--RNLH----VAVGHITRLSTSEKKWSFSVQWQVVDAPDNF 389 (402)
Q Consensus 331 ~~~p~-~~~~~~~-~~~~~~~i~v~G--G~~~----~~~~~v~~~~~~~~~~~~~~~W~~~~~~~~~ 389 (402)
.++. ......+ ....+|.+||.. |... .....++.+++. .+..|+- .....+
T Consensus 206 -~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~-----g~~~W~~-~~~~~~ 265 (276)
T 3no2_A 206 -DIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSE-----GKVVWQL-NDKVKF 265 (276)
T ss_dssp -GSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTT-----SBEEEEE-CCTTTS
T ss_pred -CCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCC-----CCEEEEe-cCcccc
Confidence 1111 1111223 335688999987 4321 023356666652 3447873 444444
No 50
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.52 E-value=0.019 Score=50.87 Aligned_cols=183 Identities=10% Similarity=0.045 Sum_probs=95.1
Q ss_pred ceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce-EEEEE-CCEEEEEcCCCCCCCCCCeeE
Q 040145 148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF-ASGVI-GGMIYVAGGSSADLFELDSAE 225 (402)
Q Consensus 148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~ 225 (402)
..++....++..++.|+.+ ..+.+||..+++......+....... .+... +++.++.|+. ...+.
T Consensus 100 v~~~~~~~~~~~l~~~~~d-------~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~v~ 166 (337)
T 1gxr_A 100 IRSCKLLPDGCTLIVGGEA-------STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS------DGNIA 166 (337)
T ss_dssp EEEEEECTTSSEEEEEESS-------SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET------TSCEE
T ss_pred EEEEEEcCCCCEEEEEcCC-------CcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC------CCcEE
Confidence 3444554466667776642 37999999988754433332222222 22222 4566666665 34688
Q ss_pred EEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCE
Q 040145 226 VLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEH 303 (402)
Q Consensus 226 ~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ 303 (402)
+||..+++.... +...........+ ++..++.++.+ ..+..||+.+.+-...-. ...........-++.
T Consensus 167 ~~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~ 237 (337)
T 1gxr_A 167 VWDLHNQTLVRQ--FQGHTDGASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGE 237 (337)
T ss_dssp EEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSS
T ss_pred EEeCCCCceeee--eecccCceEEEEECCCCCEEEEEecC------CcEEEEECCCCceEeeec-CCCceEEEEECCCCC
Confidence 999988764332 1111122223333 66666766643 368999998764322211 111111111223677
Q ss_pred EEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEE-EeCCEEEEEecCce
Q 040145 304 LFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLH 358 (402)
Q Consensus 304 l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~ 358 (402)
++++|+. ...+.+||..+..-..+.. .. ....++. ..++++++.|+.++
T Consensus 238 ~l~~~~~-~~~i~~~~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~l~~~~~dg 287 (337)
T 1gxr_A 238 WLAVGME-SSNVEVLHVNKPDKYQLHL--HE---SCVLSLKFAYCGKWFVSTGKDN 287 (337)
T ss_dssp EEEEEET-TSCEEEEETTSSCEEEECC--CS---SCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEcC-CCcEEEEECCCCCeEEEcC--Cc---cceeEEEECCCCCEEEEecCCC
Confidence 7777665 4579999998765433321 11 1112333 34677777777544
No 51
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.50 E-value=0.0086 Score=55.68 Aligned_cols=212 Identities=9% Similarity=-0.049 Sum_probs=109.8
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCc---ccc
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMI---TAR 196 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~---~~r 196 (402)
.++.+|+.+.++..+..++... ...+ +++..++.+++.++.+ ..+.+||+.+++.....+.. ...
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~----~~~~-~~~s~~~~~~~~~~~~-------~~i~~~d~~~g~~~~~~~~~~~~~~~ 169 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGF----QPKS-VRFIDNTRLAIPLLED-------EGMDVLDINSGQTVRLSPPEKYKKKL 169 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSS----CBCC-CEESSSSEEEEEBTTS-------SSEEEEETTTCCEEEECCCHHHHTTC
T ss_pred EEEEECCCCCcceEEEEEcCCC----CceE-EEEeCCCeEEEEeCCC-------CeEEEEECCCCeEeeecCcccccccC
Confidence 5778888776655544333221 1122 2332377888887642 36999999998766543322 111
Q ss_pred cceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcce-eEEEE-CC-EEEEEcccccCCccCCc
Q 040145 197 SFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASY-DAAVL-DG-KLLVTEGWLWPFFVSPR 271 (402)
Q Consensus 197 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~-~~~~~-~g-~ly~~gG~~~~~~~~~~ 271 (402)
........ ++.+|+.++. ...+.+||..+.+-...-. ...... ..+.. ++ .+|+.++.+ ..
T Consensus 170 ~~v~~~~~~~~~~~~~s~~~------d~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~------~~ 235 (433)
T 3bws_A 170 GFVETISIPEHNELWVSQMQ------ANAVHVFDLKTLAYKATVD--LTGKWSKILLYDPIRDLVYCSNWIS------ED 235 (433)
T ss_dssp CEEEEEEEGGGTEEEEEEGG------GTEEEEEETTTCCEEEEEE--CSSSSEEEEEEETTTTEEEEEETTT------TE
T ss_pred CceeEEEEcCCCEEEEEECC------CCEEEEEECCCceEEEEEc--CCCCCeeEEEEcCCCCEEEEEecCC------Cc
Confidence 11222222 6788888874 4578999998865432211 111112 22222 34 566665432 37
Q ss_pred EEEEeCCCCCeeeccccccCCCceeEEEE--CCEEEEEecc-------CCcEEEEEeCCCCceeecCCCCCCccccCCeE
Q 040145 272 GQVYDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSEL-------ERMKLKVYDPSTDSWETIEGPPLPEQICKPFA 342 (402)
Q Consensus 272 ~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~-------~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~ 342 (402)
+.+||+.+++....-. .......+.+ +++.+++++. ....+.+||+.+.+-.... ..+ .....
T Consensus 236 i~~~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~--~~~---~~~~~ 307 (433)
T 3bws_A 236 ISVIDRKTKLEIRKTD---KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI--GPP---GNKRH 307 (433)
T ss_dssp EEEEETTTTEEEEECC---CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE--EEE---ECEEE
T ss_pred EEEEECCCCcEEEEec---CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec--cCC---CCcce
Confidence 8999998775433221 1111122333 5544445443 2347999999877543322 111 11122
Q ss_pred EE-EeCC-EEEEEecCceeeeEEEEeccc
Q 040145 343 VN-ACDC-RVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 343 ~~-~~~~-~i~v~GG~~~~~~~~v~~~~~ 369 (402)
++ ..++ .+|+.++.++. +..+|.
T Consensus 308 ~~~~~~g~~l~~~~~~~~~----v~v~d~ 332 (433)
T 3bws_A 308 IVSGNTENKIYVSDMCCSK----IEVYDL 332 (433)
T ss_dssp EEECSSTTEEEEEETTTTE----EEEEET
T ss_pred EEECCCCCEEEEEecCCCE----EEEEEC
Confidence 22 2344 68787765443 555554
No 52
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.47 E-value=0.021 Score=53.50 Aligned_cols=189 Identities=14% Similarity=0.076 Sum_probs=96.8
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEE
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWR 235 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 235 (402)
++..++.|+.+ ..+.+||..+++-.. .+............++..++.|+. ...+.+||..++.-.
T Consensus 248 ~~~~l~~~~~d-------g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~ 312 (445)
T 2ovr_B 248 DGRRVVSGAYD-------FMVKVWDPETETCLH--TLQGHTNRVYSLQFDGIHVVSGSL------DTSIRVWDVETGNCI 312 (445)
T ss_dssp CSSCEEEEETT-------SCEEEEEGGGTEEEE--EECCCSSCEEEEEECSSEEEEEET------TSCEEEEETTTCCEE
T ss_pred CCCEEEEEcCC-------CEEEEEECCCCcEeE--EecCCCCceEEEEECCCEEEEEeC------CCeEEEEECCCCCEE
Confidence 66666666652 268889987764222 111111122233336666777765 356889999876532
Q ss_pred EcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeee-ccccccCCCceeEEEECCEEEEEeccCCcE
Q 040145 236 TIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES-MAVGLREGWTGSSVVVYEHLFVVSELERMK 314 (402)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~ 314 (402)
.. +............++.+++.|+.+ ..+..||+.+++-.. +.........-.++..++.+++.|+. ...
T Consensus 313 ~~--~~~~~~~v~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~-dg~ 383 (445)
T 2ovr_B 313 HT--LTGHQSLTSGMELKDNILVSGNAD------STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD-DGT 383 (445)
T ss_dssp EE--ECCCCSCEEEEEEETTEEEEEETT------SCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEET-TSE
T ss_pred EE--EcCCcccEEEEEEeCCEEEEEeCC------CeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeC-CCe
Confidence 21 111222223344456666666643 368999997765322 22111111111234567777777775 568
Q ss_pred EEEEeCCCCceeecC-CCCCCccccCCeEEEE-eCCEEEEEecCceeeeEEEEecc
Q 040145 315 LKVYDPSTDSWETIE-GPPLPEQICKPFAVNA-CDCRVYVVGRNLHVAVGHITRLS 368 (402)
Q Consensus 315 ~~~yd~~~~~W~~~~-~~~~p~~~~~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~ 368 (402)
+.+||..+.+....- ............++.. .++.++++|+.+......+.++|
T Consensus 384 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~d 439 (445)
T 2ovr_B 384 VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 439 (445)
T ss_dssp EEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred EEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEE
Confidence 999999887644321 0000110011123333 45667777776654333344443
No 53
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.45 E-value=0.011 Score=52.50 Aligned_cols=205 Identities=9% Similarity=0.037 Sum_probs=104.5
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF 199 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~ 199 (402)
.+.+||..+.+......+.... .......+..++..++.|+.+ ..+.+||..+++....-... .....
T Consensus 120 ~i~~~d~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~d-------g~v~~~d~~~~~~~~~~~~~-~~~i~ 187 (337)
T 1gxr_A 120 TLSIWDLAAPTPRIKAELTSSA----PACYALAISPDSKVCFSCCSD-------GNIAVWDLHNQTLVRQFQGH-TDGAS 187 (337)
T ss_dssp EEEEEECCCC--EEEEEEECSS----SCEEEEEECTTSSEEEEEETT-------SCEEEEETTTTEEEEEECCC-SSCEE
T ss_pred cEEEEECCCCCcceeeecccCC----CceEEEEECCCCCEEEEEeCC-------CcEEEEeCCCCceeeeeecc-cCceE
Confidence 4778888877643332222111 223344444466667777652 26899999887543321111 11112
Q ss_pred EEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEE-ECCEEEEEcccccCCccCCcEEEEeC
Q 040145 200 ASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAV-LDGKLLVTEGWLWPFFVSPRGQVYDP 277 (402)
Q Consensus 200 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~g~ly~~gG~~~~~~~~~~~~~yd~ 277 (402)
.+... ++..++.++. ...+.+||..+..-...-..+. ....... -++.++++|+.+ ..+..||.
T Consensus 188 ~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~------~~i~~~~~ 253 (337)
T 1gxr_A 188 CIDISNDGTKLWTGGL------DNTVRSWDLREGRQLQQHDFTS--QIFSLGYCPTGEWLAVGMES------SNVEVLHV 253 (337)
T ss_dssp EEEECTTSSEEEEEET------TSEEEEEETTTTEEEEEEECSS--CEEEEEECTTSSEEEEEETT------SCEEEEET
T ss_pred EEEECCCCCEEEEEec------CCcEEEEECCCCceEeeecCCC--ceEEEEECCCCCEEEEEcCC------CcEEEEEC
Confidence 22222 4556666664 4568999998875432211111 1122222 266777776643 36889999
Q ss_pred CCCCeeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEE-EeCCEEEEEe
Q 040145 278 STDNWESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVN-ACDCRVYVVG 354 (402)
Q Consensus 278 ~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~G 354 (402)
.+..-..+.. ... .. ..+.+ ++++++.++. ...+.+||..+.+-.... ... ....++. ..+++.++.|
T Consensus 254 ~~~~~~~~~~-~~~-~v-~~~~~~~~~~~l~~~~~-dg~i~~~~~~~~~~~~~~--~~~---~~v~~~~~s~~~~~l~~~ 324 (337)
T 1gxr_A 254 NKPDKYQLHL-HES-CV-LSLKFAYCGKWFVSTGK-DNLLNAWRTPYGASIFQS--KES---SSVLSCDISVDDKYIVTG 324 (337)
T ss_dssp TSSCEEEECC-CSS-CE-EEEEECTTSSEEEEEET-TSEEEEEETTTCCEEEEE--ECS---SCEEEEEECTTSCEEEEE
T ss_pred CCCCeEEEcC-Ccc-ce-eEEEECCCCCEEEEecC-CCcEEEEECCCCeEEEEe--cCC---CcEEEEEECCCCCEEEEe
Confidence 8765332221 111 11 12222 5677777665 568999999876544221 111 1112333 3467777777
Q ss_pred cCcee
Q 040145 355 RNLHV 359 (402)
Q Consensus 355 G~~~~ 359 (402)
+.+..
T Consensus 325 ~~dg~ 329 (337)
T 1gxr_A 325 SGDKK 329 (337)
T ss_dssp ETTSC
T ss_pred cCCCe
Confidence 75543
No 54
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=97.45 E-value=0.046 Score=47.20 Aligned_cols=227 Identities=10% Similarity=0.007 Sum_probs=115.2
Q ss_pred CCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC-CceeecCCCcc
Q 040145 116 TGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK-NRWTVMNKMIT 194 (402)
Q Consensus 116 ~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t-~~W~~~~~~~~ 194 (402)
.....++++|+.+++...+.... .......+..++..+++++. ..+++||..+ ++...+.....
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~~~-------~~v~~~~~spdg~~l~~~~~--------~~i~~~d~~~~~~~~~~~~~~~ 83 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQTP-------ELFEAPNWSPDGKYLLLNSE--------GLLYRLSLAGDPSPEKVDTGFA 83 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEEES-------SCCEEEEECTTSSEEEEEET--------TEEEEEESSSCCSCEECCCTTC
T ss_pred CcceeEEEEeCCCCceeeeccCC-------cceEeeEECCCCCEEEEEcC--------CeEEEEeCCCCCCceEeccccc
Confidence 34556888999888766543322 22344455456666666542 2799999998 77666543332
Q ss_pred cccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE-CCE-EEEEcccccCCccCCc
Q 040145 195 ARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL-DGK-LLVTEGWLWPFFVSPR 271 (402)
Q Consensus 195 ~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~-ly~~gG~~~~~~~~~~ 271 (402)
......+.. -+++.+++++..... ...++.+|..++.-..+..... ....... +++ |++.++..+ ...
T Consensus 84 ~~~~~~~~~spdg~~l~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~---~~~~~~spdg~~l~~~~~~~~----~~~ 154 (297)
T 2ojh_A 84 TICNNDHGISPDGALYAISDKVEFG--KSAIYLLPSTGGTPRLMTKNLP---SYWHGWSPDGKSFTYCGIRDQ----VFD 154 (297)
T ss_dssp CCBCSCCEECTTSSEEEEEECTTTS--SCEEEEEETTCCCCEECCSSSS---EEEEEECTTSSEEEEEEEETT----EEE
T ss_pred cccccceEECCCCCEEEEEEeCCCC--cceEEEEECCCCceEEeecCCC---ccceEECCCCCEEEEEECCCC----ceE
Confidence 122122222 245544444432211 5678889888776555533221 1122222 554 444444321 125
Q ss_pred EEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEec--cCCcEEEEEeCCCCceeecCCCCCCccccCCeEEE-EeCC
Q 040145 272 GQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSE--LERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVN-ACDC 348 (402)
Q Consensus 272 ~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg--~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~ 348 (402)
++.+|..++....+... ..........-+++.+++++ .....++.++........+.. .. .....+. ..++
T Consensus 155 l~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~---~~~~~~~~s~dg 228 (297)
T 2ojh_A 155 IYSMDIDSGVETRLTHG-EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD--SA---YGDWFPHPSPSG 228 (297)
T ss_dssp EEEEETTTCCEEECCCS-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC--CS---EEEEEEEECTTS
T ss_pred EEEEECCCCcceEcccC-CCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec--CC---cccCCeEECCCC
Confidence 67777777766555431 11111111222555444433 235678888877776666542 11 1111222 3466
Q ss_pred EEEEEecCcee-------eeEEEEecccccc
Q 040145 349 RVYVVGRNLHV-------AVGHITRLSTSEK 372 (402)
Q Consensus 349 ~i~v~GG~~~~-------~~~~v~~~~~~~~ 372 (402)
+.+++++.... ....++.+|....
T Consensus 229 ~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 229 DKVVFVSYDADVFDHPRDLDVRVQLMDMDGG 259 (297)
T ss_dssp SEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred CEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence 65555543311 3356777776443
No 55
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.44 E-value=0.0081 Score=55.87 Aligned_cols=197 Identities=14% Similarity=0.037 Sum_probs=102.7
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK 183 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t 183 (402)
++.+++.+... ..+.+||+.+.+........... ........+++..++.+++.++.+ ..+.+||..+
T Consensus 133 ~~~~~~~~~~~----~~i~~~d~~~g~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~s~~~d-------~~v~~~d~~~ 200 (433)
T 3bws_A 133 NTRLAIPLLED----EGMDVLDINSGQTVRLSPPEKYK-KKLGFVETISIPEHNELWVSQMQA-------NAVHVFDLKT 200 (433)
T ss_dssp SSEEEEEBTTS----SSEEEEETTTCCEEEECCCHHHH-TTCCEEEEEEEGGGTEEEEEEGGG-------TEEEEEETTT
T ss_pred CCeEEEEeCCC----CeEEEEECCCCeEeeecCccccc-ccCCceeEEEEcCCCEEEEEECCC-------CEEEEEECCC
Confidence 56666665332 24888999888765533221100 000122334445578888888752 3799999988
Q ss_pred Cceee-cCCCcccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEE
Q 040145 184 NRWTV-MNKMITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLV 258 (402)
Q Consensus 184 ~~W~~-~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~ 258 (402)
++... +.. .......++.. +..+|+.++. ...+.+||+.+++....- +.... ...+.+ +|+.++
T Consensus 201 ~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~------~~~i~~~d~~~~~~~~~~--~~~~~-~~~~~~~~~g~~l~ 269 (433)
T 3bws_A 201 LAYKATVDL--TGKWSKILLYDPIRDLVYCSNWI------SEDISVIDRKTKLEIRKT--DKIGL-PRGLLLSKDGKELY 269 (433)
T ss_dssp CCEEEEEEC--SSSSEEEEEEETTTTEEEEEETT------TTEEEEEETTTTEEEEEC--CCCSE-EEEEEECTTSSEEE
T ss_pred ceEEEEEcC--CCCCeeEEEEcCCCCEEEEEecC------CCcEEEEECCCCcEEEEe--cCCCC-ceEEEEcCCCCEEE
Confidence 65332 221 11112233333 3467777754 357899999887654332 22211 222333 565444
Q ss_pred EcccccCCc--cCCcEEEEeCCCCCeeeccccccCCCceeEEEECC-EEEEEeccCCcEEEEEeCCCCce
Q 040145 259 TEGWLWPFF--VSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYE-HLFVVSELERMKLKVYDPSTDSW 325 (402)
Q Consensus 259 ~gG~~~~~~--~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~l~~~gg~~~~~~~~yd~~~~~W 325 (402)
+++...... ....+.+||+.+++-..... .+.........-++ .+|+.++. ...+.+||..+.+-
T Consensus 270 ~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~-~~~v~v~d~~~~~~ 337 (433)
T 3bws_A 270 IAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMC-CSKIEVYDLKEKKV 337 (433)
T ss_dssp EEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETT-TTEEEEEETTTTEE
T ss_pred EEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecC-CCEEEEEECCCCcE
Confidence 444322111 12368899998775433221 11111111112244 57766554 56899999987643
No 56
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=97.41 E-value=0.051 Score=47.24 Aligned_cols=192 Identities=13% Similarity=0.140 Sum_probs=102.6
Q ss_pred EEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCc---c-cccceEEEEE--CCEEEEEcCCCCCCCCCCee
Q 040145 151 VSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMI---T-ARSFFASGVI--GGMIYVAGGSSADLFELDSA 224 (402)
Q Consensus 151 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~---~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 224 (402)
+++..++.+|+.+.. ...+.+||+.......++... . ......+++. ++.+|+.+... ...+
T Consensus 35 v~~~~~g~l~v~~~~-------~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~-----~~~i 102 (286)
T 1q7f_A 35 VAVNAQNDIIVADTN-------NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP-----THQI 102 (286)
T ss_dssp EEECTTCCEEEEEGG-------GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG-----GCEE
T ss_pred EEECCCCCEEEEECC-------CCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC-----CCEE
Confidence 344346788887643 237999998855443333211 1 1122344442 67899886320 3568
Q ss_pred EEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--
Q 040145 225 EVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV-- 300 (402)
Q Consensus 225 ~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-- 300 (402)
.+||.....-..+.... ......+.+ +|++|+.... ...+.+||+.......+... ........+.+
T Consensus 103 ~~~d~~g~~~~~~~~~~--~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~-~~~~~p~~i~~~~ 173 (286)
T 1q7f_A 103 QIYNQYGQFVRKFGATI--LQHPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNVLHKFGCS-KHLEFPNGVVVND 173 (286)
T ss_dssp EEECTTSCEEEEECTTT--CSCEEEEEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECT-TTCSSEEEEEECS
T ss_pred EEECCCCcEEEEecCcc--CCCceEEEEeCCCCEEEEECC------CCEEEEEcCCCCEEEEeCCC-CccCCcEEEEECC
Confidence 89996544433332211 111222333 6788887543 24789999765544333221 11111112333
Q ss_pred CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE-eCCEEEEEecCceeeeEEEEecccc
Q 040145 301 YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA-CDCRVYVVGRNLHVAVGHITRLSTS 370 (402)
Q Consensus 301 ~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~~ 370 (402)
+|++|+.... ...+.+||+.......+.. ........+++. .+|+|||.....+ ..|..||+.
T Consensus 174 ~g~l~v~~~~-~~~i~~~~~~g~~~~~~~~---~g~~~~p~~i~~d~~G~l~v~~~~~~---~~i~~~~~~ 237 (286)
T 1q7f_A 174 KQEIFISDNR-AHCVKVFNYEGQYLRQIGG---EGITNYPIGVGINSNGEILIADNHNN---FNLTIFTQD 237 (286)
T ss_dssp SSEEEEEEGG-GTEEEEEETTCCEEEEESC---TTTSCSEEEEEECTTCCEEEEECSSS---CEEEEECTT
T ss_pred CCCEEEEECC-CCEEEEEcCCCCEEEEEcc---CCccCCCcEEEECCCCCEEEEeCCCC---EEEEEECCC
Confidence 5888886543 5689999997665445432 111122334444 4678999876543 136777753
No 57
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.39 E-value=0.017 Score=49.66 Aligned_cols=161 Identities=9% Similarity=-0.029 Sum_probs=98.9
Q ss_pred eEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCC
Q 040145 199 FASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPS 278 (402)
Q Consensus 199 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~ 278 (402)
.+....++.+|+..|. ...+.++|++|++-..-- ++...++.+.+..+++||+.... .+.+++||++
T Consensus 58 qGL~~~~~~Ly~stG~------~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~------~~~v~V~D~~ 124 (268)
T 3nok_A 58 QGLVFHQGHFFESTGH------QGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWT------EGLLFTWSGM 124 (268)
T ss_dssp EEEEEETTEEEEEETT------TTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESS------SCEEEEEETT
T ss_pred ceEEEECCEEEEEcCC------CCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEcc------CCEEEEEECC
Confidence 4666678999999986 334899999998743222 55444556677778999998653 3579999998
Q ss_pred CCCee-eccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCcee-ecCCCCCCccccCCeEEEEeCCEEEEEecC
Q 040145 279 TDNWE-SMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWE-TIEGPPLPEQICKPFAVNACDCRVYVVGRN 356 (402)
Q Consensus 279 ~~~W~-~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~-~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~ 356 (402)
+.+-. +++. .+.++ ..+.-+++||+.-| .+.++.+|+++.+-. .+....-+........+...+|+||+---
T Consensus 125 Tl~~~~ti~~-~~eGw--GLt~Dg~~L~vSdG--s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw- 198 (268)
T 3nok_A 125 PPQRERTTRY-SGEGW--GLCYWNGKLVRSDG--GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIW- 198 (268)
T ss_dssp TTEEEEEEEC-SSCCC--CEEEETTEEEEECS--SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEET-
T ss_pred cCcEEEEEeC-CCcee--EEecCCCEEEEECC--CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEEC-
Confidence 86543 3332 22221 12345677888765 569999999987533 22210111111111234455889885321
Q ss_pred ceeeeEEEEecccccccCceeeeEEEEe
Q 040145 357 LHVAVGHITRLSTSEKKWSFSVQWQVVD 384 (402)
Q Consensus 357 ~~~~~~~v~~~~~~~~~~~~~~~W~~~~ 384 (402)
..++|.+.||... +-..|..+.
T Consensus 199 ---~s~~I~vIDp~TG---~V~~~Idl~ 220 (268)
T 3nok_A 199 ---HSSDVLEIDPATG---TVVGVIDAS 220 (268)
T ss_dssp ---TCSEEEEECTTTC---BEEEEEECH
T ss_pred ---CCCeEEEEeCCCC---cEEEEEECC
Confidence 1346888898665 445666654
No 58
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.37 E-value=0.019 Score=51.85 Aligned_cols=193 Identities=8% Similarity=0.064 Sum_probs=97.1
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK 183 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t 183 (402)
++.+++.++. ...+.+||..+.++..+..+.... ....++.+..++.+++.|+.+ ..+.+||..+
T Consensus 19 ~~~~l~~~~~----d~~v~i~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~~~~~d-------g~i~vwd~~~ 83 (372)
T 1k8k_C 19 DRTQIAICPN----NHEVHIYEKSGNKWVQVHELKEHN----GQVTGVDWAPDSNRIVTCGTD-------RNAYVWTLKG 83 (372)
T ss_dssp TSSEEEEECS----SSEEEEEEEETTEEEEEEEEECCS----SCEEEEEEETTTTEEEEEETT-------SCEEEEEEET
T ss_pred CCCEEEEEeC----CCEEEEEeCCCCcEEeeeeecCCC----CcccEEEEeCCCCEEEEEcCC-------CeEEEEECCC
Confidence 3445555533 234788898888765544333111 223344444466777777652 2688999988
Q ss_pred CceeecCCCcc-cccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCc-EEEcCCCCCC-CcceeEEEE--CCEEE
Q 040145 184 NRWTVMNKMIT-ARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGN-WRTIASMGTN-MASYDAAVL--DGKLL 257 (402)
Q Consensus 184 ~~W~~~~~~~~-~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~-~~~~~~~~~--~g~ly 257 (402)
+++.....+.. ......+... +++.++.|+. ...+.+||..+.. |........+ ........+ ++.++
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 157 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSG------SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 157 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSSEEEEEET------TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEE
T ss_pred CeeeeeEEeecCCCceeEEEECCCCCEEEEEeC------CCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEE
Confidence 87655432221 1222223332 4566666664 3456777776554 3322222111 112222222 66777
Q ss_pred EEcccccCCccCCcEEEEeCCCCC---------ee-------eccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEe
Q 040145 258 VTEGWLWPFFVSPRGQVYDPSTDN---------WE-------SMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYD 319 (402)
Q Consensus 258 ~~gG~~~~~~~~~~~~~yd~~~~~---------W~-------~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd 319 (402)
+.|+.+ ..+..||..... |. .+.........-..+.+ ++..++.|+. ...+.+||
T Consensus 158 ~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d 230 (372)
T 1k8k_C 158 AAGSCD------FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH-DSTVCLAD 230 (372)
T ss_dssp EEEETT------SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET-TTEEEEEE
T ss_pred EEEcCC------CCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC-CCEEEEEE
Confidence 777643 368888864221 11 11110011111112233 5666666665 56799999
Q ss_pred CCCCc
Q 040145 320 PSTDS 324 (402)
Q Consensus 320 ~~~~~ 324 (402)
..+.+
T Consensus 231 ~~~~~ 235 (372)
T 1k8k_C 231 ADKKM 235 (372)
T ss_dssp GGGTT
T ss_pred CCCCc
Confidence 97664
No 59
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=97.36 E-value=0.029 Score=49.96 Aligned_cols=234 Identities=11% Similarity=0.109 Sum_probs=107.9
Q ss_pred CCeEEEEEEeCCCCceeEEEeecC--CCcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEEE
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLT--HYCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYE 180 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~--~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d 180 (402)
+..+|+.+... ..+.+|+.. +.++..+..++... . ...+++..++ .||+.+.. ...+.+||
T Consensus 49 g~~l~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~s~dg~~l~~~~~~-------~~~i~~~d 112 (343)
T 1ri6_A 49 KRYLYVGVRPE----FRVLAYRIAPDDGALTFAAESALPG----S-LTHISTDHQGQFVFVGSYN-------AGNVSVTR 112 (343)
T ss_dssp SSEEEEEETTT----TEEEEEEECTTTCCEEEEEEEECSS----C-CSEEEECTTSSEEEEEETT-------TTEEEEEE
T ss_pred CCEEEEeecCC----CeEEEEEecCCCCceeeccccccCC----C-CcEEEEcCCCCEEEEEecC-------CCeEEEEE
Confidence 44566654221 235555554 66766554333211 1 1223333344 46665532 23688888
Q ss_pred CCCCc-eeecCCCcccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCC-CcEEEcC----CCCCCCcceeEEEE
Q 040145 181 MQKNR-WTVMNKMITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVK-GNWRTIA----SMGTNMASYDAAVL 252 (402)
Q Consensus 181 ~~t~~-W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t-~~W~~~~----~~~~~~~~~~~~~~ 252 (402)
..++. .+.+...........++.. +..+|+.+.. ...+.+||..+ ++...+. ..+.. .....+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 185 (343)
T 1ri6_A 113 LEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK------QDRICLFTVSDDGHLVAQDPAEVTTVEG-AGPRHMVF 185 (343)
T ss_dssp EETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG------GTEEEEEEECTTSCEEEEEEEEEECSTT-CCEEEEEE
T ss_pred CCCCccccccccccCCCCceEEEECCCCCEEEEecCC------CCEEEEEEecCCCceeeecccccccCCC-CCcceEEE
Confidence 84322 2222211111122233333 3367776532 45688999887 6555322 11111 12222333
Q ss_pred --CCE-EEEEcccccCCccCCcEEEEeCC--CCCeeeccc--cccCC----CceeEEEE--CC-EEEEEeccCCcEEEEE
Q 040145 253 --DGK-LLVTEGWLWPFFVSPRGQVYDPS--TDNWESMAV--GLREG----WTGSSVVV--YE-HLFVVSELERMKLKVY 318 (402)
Q Consensus 253 --~g~-ly~~gG~~~~~~~~~~~~~yd~~--~~~W~~~~~--~~~~~----~~~~~~~~--~~-~l~~~gg~~~~~~~~y 318 (402)
+++ +|+.+.. ...+.+||.. ++++..+.. ..+.. .....+.+ ++ .||+.+. ....+.+|
T Consensus 186 ~pdg~~l~~~~~~------~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~-~~~~i~v~ 258 (343)
T 1ri6_A 186 HPNEQYAYCVNEL------NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR-TASLITVF 258 (343)
T ss_dssp CTTSSEEEEEETT------TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET-TTTEEEEE
T ss_pred CCCCCEEEEEeCC------CCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEec-CCCEEEEE
Confidence 454 6666533 2368888884 455543221 12221 11112333 34 4655443 35678888
Q ss_pred eCC--CCceeecCCCCCCccccCCeEEEE-eCCE-EEEEecCceeeeEEEEecccccc
Q 040145 319 DPS--TDSWETIEGPPLPEQICKPFAVNA-CDCR-VYVVGRNLHVAVGHITRLSTSEK 372 (402)
Q Consensus 319 d~~--~~~W~~~~~~~~p~~~~~~~~~~~-~~~~-i~v~GG~~~~~~~~v~~~~~~~~ 372 (402)
|.. +.+++.+...+... . ...++. .+++ ||+.++..+. ..+|.+|+...
T Consensus 259 d~~~~~~~~~~~~~~~~~~--~-~~~~~~s~dg~~l~~~~~~~~~--v~v~~~d~~~g 311 (343)
T 1ri6_A 259 SVSEDGSVLSKEGFQPTET--Q-PRGFNVDHSGKYLIAAGQKSHH--ISVYEIVGEQG 311 (343)
T ss_dssp EECTTSCCEEEEEEEECSS--S-CCCEEECTTSSEEEEECTTTCE--EEEEEEETTTT
T ss_pred EEcCCCCceEEeeeecCCC--c-cceEEECCCCCEEEEecCCCCe--EEEEEEcCCCc
Confidence 887 55666654222211 1 223333 3454 5555543332 44666676544
No 60
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.052 Score=49.80 Aligned_cols=203 Identities=9% Similarity=0.024 Sum_probs=97.2
Q ss_pred EEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccc----
Q 040145 121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITAR---- 196 (402)
Q Consensus 121 ~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r---- 196 (402)
+.+||........+..-. ....++.+..++..++.++.+ ..+.+||..+++....-......
T Consensus 132 i~i~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~ 197 (425)
T 1r5m_A 132 LRLWNKTGALLNVLNFHR-------APIVSVKWNKDGTHIISMDVE-------NVTILWNVISGTVMQHFELKETGGSSI 197 (425)
T ss_dssp EEEEETTSCEEEEECCCC-------SCEEEEEECTTSSEEEEEETT-------CCEEEEETTTTEEEEEECCC-------
T ss_pred EEEEeCCCCeeeeccCCC-------ccEEEEEECCCCCEEEEEecC-------CeEEEEECCCCcEEEEeeccccCccce
Confidence 667774444333333211 223344443456666666542 26889999887643321111110
Q ss_pred ----------cceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCccee-EEEE-CCEEEEEccccc
Q 040145 197 ----------SFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYD-AAVL-DGKLLVTEGWLW 264 (402)
Q Consensus 197 ----------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~-~~~~-~g~ly~~gG~~~ 264 (402)
....+....+..+++|+. ...+.+||..+..-... +........ .+.. ++.+++.|+.+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~i~~~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d- 268 (425)
T 1r5m_A 198 NAENHSGDGSLGVDVEWVDDDKFVIPGP------KGAIFVYQITEKTPTGK--LIGHHGPISVLEFNDTNKLLLSASDD- 268 (425)
T ss_dssp --------CCCBSCCEEEETTEEEEECG------GGCEEEEETTCSSCSEE--ECCCSSCEEEEEEETTTTEEEEEETT-
T ss_pred eeccccCCcceeeEEEEcCCCEEEEEcC------CCeEEEEEcCCCceeee--eccCCCceEEEEECCCCCEEEEEcCC-
Confidence 022233333344566654 45688999887642111 111111112 2222 66666666643
Q ss_pred CCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE-CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEE
Q 040145 265 PFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV-YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAV 343 (402)
Q Consensus 265 ~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~ 343 (402)
..+.+||..+.+-...-.... ......+.. ++ +++.++. ...+.+||..+.+-...- .... ....++
T Consensus 269 -----~~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~~-~l~~~~~-d~~i~i~d~~~~~~~~~~--~~~~--~~i~~~ 336 (425)
T 1r5m_A 269 -----GTLRIWHGGNGNSQNCFYGHS-QSIVSASWVGDD-KVISCSM-DGSVRLWSLKQNTLLALS--IVDG--VPIFAG 336 (425)
T ss_dssp -----SCEEEECSSSBSCSEEECCCS-SCEEEEEEETTT-EEEEEET-TSEEEEEETTTTEEEEEE--ECTT--CCEEEE
T ss_pred -----CEEEEEECCCCccceEecCCC-ccEEEEEECCCC-EEEEEeC-CCcEEEEECCCCcEeEec--ccCC--ccEEEE
Confidence 368899987754322211111 111112233 45 5555554 568999999876533221 1111 111222
Q ss_pred E-EeCCEEEEEecCce
Q 040145 344 N-ACDCRVYVVGRNLH 358 (402)
Q Consensus 344 ~-~~~~~i~v~GG~~~ 358 (402)
. ..++++++.|+.++
T Consensus 337 ~~s~~~~~l~~~~~dg 352 (425)
T 1r5m_A 337 RISQDGQKYAVAFMDG 352 (425)
T ss_dssp EECTTSSEEEEEETTS
T ss_pred EEcCCCCEEEEEECCC
Confidence 2 34677777777554
No 61
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.0075 Score=60.96 Aligned_cols=221 Identities=10% Similarity=0.050 Sum_probs=109.6
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccC--CEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccccc
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPRE--GTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARS 197 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~--~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~ 197 (402)
.+.+||....++..+..+.... ....++....+ +..++.|+.+ ..+.+||..++.|..+..+.....
T Consensus 32 ~I~vwd~~~~~~~~~~~l~~h~----~~V~~l~~s~~~~~~~l~s~s~D-------g~I~vwd~~~~~~~~~~~~~~h~~ 100 (753)
T 3jro_A 32 TIKIFEVEGETHKLIDTLTGHE----GPVWRVDWAHPKFGTILASCSYD-------GKVLIWKEENGRWSQIAVHAVHSA 100 (753)
T ss_dssp EEEEEEEETTEEEEEEEECCCS----SCEEEEEECCTTSCSEEEEEETT-------SCEEEEEEETTEEEEEEEECCCSS
T ss_pred cEEEEecCCCCCccceeccCCc----CceEEEEecCCCCCCEEEEEeCC-------CeEEEEECCCCcccccccccCCCC
Confidence 3777887766666554443211 22333444233 6777777763 269999999988766544432222
Q ss_pred ce-EEEEE-C--CEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE---------------CCEEEE
Q 040145 198 FF-ASGVI-G--GMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL---------------DGKLLV 258 (402)
Q Consensus 198 ~~-~~~~~-~--~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~---------------~g~ly~ 258 (402)
.. ++... + +.+++.|+. ...+.+||..++.-.....+.........+.. ++.+++
T Consensus 101 ~V~~v~~sp~~~~~~l~sgs~------dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~ 174 (753)
T 3jro_A 101 SVNSVQWAPHEYGPLLLVASS------DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV 174 (753)
T ss_dssp CEEEEEECCGGGCSEEEEEET------TSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEE
T ss_pred CeEEEEECCCCCCCEEEEEeC------CCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEE
Confidence 22 33332 2 567777765 45688888876621111000111111112221 356666
Q ss_pred EcccccCCccCCcEEEEeCCCCC--eeeccccccCCCceeEEEE--C---CEEEEEeccCCcEEEEEeCCCCc--eeecC
Q 040145 259 TEGWLWPFFVSPRGQVYDPSTDN--WESMAVGLREGWTGSSVVV--Y---EHLFVVSELERMKLKVYDPSTDS--WETIE 329 (402)
Q Consensus 259 ~gG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~--~---~~l~~~gg~~~~~~~~yd~~~~~--W~~~~ 329 (402)
.|+.+ ..+..||..++. +..+.........-.++.+ + +.+++.|+. ...+.+||..+.. +....
T Consensus 175 sgs~d------g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~-Dg~I~iwd~~~~~~~~~~~~ 247 (753)
T 3jro_A 175 TGGAD------NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ-DRTCIIWTQDNEQGPWKKTL 247 (753)
T ss_dssp EEETT------SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES-SSCEEEEEESSSSSCCBCCB
T ss_pred EEECC------CeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec-CCEEEEecCCCCCCcceeEE
Confidence 66653 358888876543 3333221111111112333 3 677777776 4568888887642 21111
Q ss_pred CCCCC-ccccCCeEEEEeCCEEEEEecCceeeeEEEEeccc
Q 040145 330 GPPLP-EQICKPFAVNACDCRVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 330 ~~~~p-~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~ 369 (402)
. ... ............++..++.||.++. |..++.
T Consensus 248 ~-~~~~~~~~v~~l~~spdg~~l~s~s~Dg~----I~vwd~ 283 (753)
T 3jro_A 248 L-KEEKFPDVLWRASWSLSGNVLALSGGDNK----VTLWKE 283 (753)
T ss_dssp S-SSSCCSSCCCCEEECTTTCCEEEECSSSC----EECCBC
T ss_pred e-ccCCCCCceEEEEEcCCCCEEEEEcCCCE----EEEEec
Confidence 0 111 1111112233457778888876544 455543
No 62
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.31 E-value=0.085 Score=47.12 Aligned_cols=197 Identities=8% Similarity=0.002 Sum_probs=95.3
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-C-CEEEEEcCCCCCCCCCCeeEEEcCCCCc
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-G-GMIYVAGGSSADLFELDSAEVLDPVKGN 233 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 233 (402)
++.+|+....... ......++++|+.+++....-+. ......++.. + +.+|+.+.. ...+.+||+.+++
T Consensus 52 g~~l~~~~~~~~~-~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~------~~~v~~~d~~~~~ 122 (353)
T 3vgz_A 52 ENALWLATSQSRK-LDKGGVVYRLDPVTLEVTQAIHN--DLKPFGATINNTTQTLWFGNTV------NSAVTAIDAKTGE 122 (353)
T ss_dssp TTEEEEEECCCTT-TEESEEEEEECTTTCCEEEEEEE--SSCCCSEEEETTTTEEEEEETT------TTEEEEEETTTCC
T ss_pred CCEEEEEcCCCcC-CCCCccEEEEcCCCCeEEEEEec--CCCcceEEECCCCCEEEEEecC------CCEEEEEeCCCCe
Confidence 4577776533110 01245899999998864332111 1112233333 3 468887764 4578999999876
Q ss_pred EEEcCCCCCCC--------cceeEEEE-C-CEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCE
Q 040145 234 WRTIASMGTNM--------ASYDAAVL-D-GKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEH 303 (402)
Q Consensus 234 W~~~~~~~~~~--------~~~~~~~~-~-g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ 303 (402)
-...-...... .....+.. + +.+|+.+... ...+.+||+.+.+-...-........+....-+++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 123 VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence 43221111110 11222332 4 4577665221 23689999987653322110111112222333444
Q ss_pred -EEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE-e-CCEEEEEecCceeeeEEEEecccccc
Q 040145 304 -LFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA-C-DCRVYVVGRNLHVAVGHITRLSTSEK 372 (402)
Q Consensus 304 -l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~-~~~i~v~GG~~~~~~~~v~~~~~~~~ 372 (402)
+|+. .. ...+.+||+.+.+-...-............+++. . ++.||+..... +.++.+|+...
T Consensus 198 ~l~~~-~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----~~v~~~d~~~~ 263 (353)
T 3vgz_A 198 RLYTT-NA-DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA----AEVLVVDTRNG 263 (353)
T ss_dssp EEEEE-CT-TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS----SEEEEEETTTC
T ss_pred EEEEE-cC-CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC----CEEEEEECCCC
Confidence 5554 33 4588999998875332211111101112223333 2 45577765432 34777776443
No 63
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=97.30 E-value=0.049 Score=48.53 Aligned_cols=199 Identities=13% Similarity=0.076 Sum_probs=102.4
Q ss_pred EEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcC
Q 040145 151 VSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDP 229 (402)
Q Consensus 151 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~ 229 (402)
.++..++.||+.+.. ...+++||+.+++.+.+.... .....+++.. ++++|+....+... ...+.+||+
T Consensus 50 ~~~~~~g~l~~~~~~-------~~~i~~~d~~~~~~~~~~~~~-~~~~~~i~~~~dg~l~v~~~~~~~~--~~~i~~~d~ 119 (333)
T 2dg1_A 50 LNFDRQGQLFLLDVF-------EGNIFKINPETKEIKRPFVSH-KANPAAIKIHKDGRLFVCYLGDFKS--TGGIFAATE 119 (333)
T ss_dssp EEECTTSCEEEEETT-------TCEEEEECTTTCCEEEEEECS-SSSEEEEEECTTSCEEEEECTTSSS--CCEEEEECT
T ss_pred cEECCCCCEEEEECC-------CCEEEEEeCCCCcEEEEeeCC-CCCcceEEECCCCcEEEEeCCCCCC--CceEEEEeC
Confidence 344347788887654 237999999998876643111 1222333332 56788876432111 257899999
Q ss_pred CCCcEEEc-CCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CC-E
Q 040145 230 VKGNWRTI-ASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YE-H 303 (402)
Q Consensus 230 ~t~~W~~~-~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~-~ 303 (402)
.++..+.+ ...... .....+.+ +|.+|+.............++.||+.+++...+...... . ..+.+ ++ .
T Consensus 120 ~~~~~~~~~~~~~~~-~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~-~~i~~~~dg~~ 195 (333)
T 2dg1_A 120 NGDNLQDIIEDLSTA-YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISV--A-NGIALSTDEKV 195 (333)
T ss_dssp TSCSCEEEECSSSSC-CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESS--E-EEEEECTTSSE
T ss_pred CCCEEEEEEccCccC-CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCc--c-cceEECCCCCE
Confidence 98876532 221111 12222233 678888653211111123689999887776655321111 1 12222 45 4
Q ss_pred EEEEeccCCcEEEEEeCCCC--ceeecCC---CCCCccccCCeEEEE-eCCEEEEEecCceeeeEEEEeccc
Q 040145 304 LFVVSELERMKLKVYDPSTD--SWETIEG---PPLPEQICKPFAVNA-CDCRVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 304 l~~~gg~~~~~~~~yd~~~~--~W~~~~~---~~~p~~~~~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~ 369 (402)
||+.... ...+++||..++ ....+.. ...+.. ....+++. .+|+||+.....+ .|..||+
T Consensus 196 l~v~~~~-~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~----~v~~~d~ 261 (333)
T 2dg1_A 196 LWVTETT-ANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQG----RVLVFNK 261 (333)
T ss_dssp EEEEEGG-GTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTT----EEEEECT
T ss_pred EEEEeCC-CCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCC----EEEEECC
Confidence 7766432 458999998642 2322110 001110 11223333 4678888764322 3677776
No 64
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=97.30 E-value=0.0089 Score=53.84 Aligned_cols=190 Identities=15% Similarity=0.161 Sum_probs=95.1
Q ss_pred CCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcc-
Q 040145 116 TGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMIT- 194 (402)
Q Consensus 116 ~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~- 194 (402)
.....++.+|..+.++..+...... .....+++..+++||+.+... ....+++||..+++++.+..+..
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~-----~~p~~~a~spdg~l~~~~~~~-----~~~~v~~~~~~~g~~~~~~~~~~~ 84 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAAT-----QNPTYLALSAKDCLYSVDKED-----DEGGIAAWQIDGQTAHKLNTVVAP 84 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEEC-----SCCCCEEECTTCEEEEEEEET-----TEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeecc-----CCcceEEEccCCeEEEEEecC-----CCceEEEEEecCCcEEEeeeeecC
Confidence 3445677888888887654322211 111223333477787776421 13479999998888776654322
Q ss_pred cccceEEEEE-CC-EEEEEcCCCCCCCCCCeeEEEcCC-CCcEEEcCCC------CCCCc---ceeEEEE--CCEEEEEc
Q 040145 195 ARSFFASGVI-GG-MIYVAGGSSADLFELDSAEVLDPV-KGNWRTIASM------GTNMA---SYDAAVL--DGKLLVTE 260 (402)
Q Consensus 195 ~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~-t~~W~~~~~~------~~~~~---~~~~~~~--~g~ly~~g 260 (402)
......++.. ++ .||+.+.. ...+.+||.. ++..+.+... |..+. ....+.+ +|++|+.+
T Consensus 85 ~~~p~~~a~spdg~~l~~~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~ 158 (347)
T 3hfq_A 85 GTPPAYVAVDEARQLVYSANYH------KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVID 158 (347)
T ss_dssp SCCCSEEEEETTTTEEEEEETT------TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEE
T ss_pred CCCCEEEEECCCCCEEEEEeCC------CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEe
Confidence 2222233333 34 57776632 3567788874 3343333211 11111 1122222 67777764
Q ss_pred ccccCCccCCcEEEEeCC-CCCeeeccc-cccCCCceeEEEE--CCE-EEEEeccCCcEEEEEeCC--CCceeec
Q 040145 261 GWLWPFFVSPRGQVYDPS-TDNWESMAV-GLREGWTGSSVVV--YEH-LFVVSELERMKLKVYDPS--TDSWETI 328 (402)
Q Consensus 261 G~~~~~~~~~~~~~yd~~-~~~W~~~~~-~~~~~~~~~~~~~--~~~-l~~~gg~~~~~~~~yd~~--~~~W~~~ 328 (402)
.. ...+.+||+. +++...+.. ..+.......+.+ +|+ +|+.+.. ...+.+|+.. +.++..+
T Consensus 159 ~~------~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~-~~~v~v~~~~~~~g~~~~~ 226 (347)
T 3hfq_A 159 LG------SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGEL-SSQIASLKYDTQTGAFTQL 226 (347)
T ss_dssp TT------TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-TTEEEEEEEETTTTEEEEE
T ss_pred CC------CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCC-CCEEEEEEecCCCCceEEe
Confidence 42 2368889987 566554432 1111111111223 565 6665443 4455555544 5666544
No 65
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.042 Score=49.58 Aligned_cols=195 Identities=11% Similarity=0.042 Sum_probs=102.9
Q ss_pred EEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce-EEEEE-C--CEEEEEcCCCCCCCCCCeeE
Q 040145 150 CVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF-ASGVI-G--GMIYVAGGSSADLFELDSAE 225 (402)
Q Consensus 150 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~-~~~~~-~--~~iyv~GG~~~~~~~~~~~~ 225 (402)
++++..++..++.|+.+ ..+.+||...++++.+..+....... ++... + +.+++.|+. ...+.
T Consensus 16 ~~~~s~~~~~l~~~~~d-------g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~------dg~v~ 82 (379)
T 3jrp_A 16 DAVLDYYGKRLATCSSD-------KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY------DGKVL 82 (379)
T ss_dssp EEEECSSSSEEEEEETT-------SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET------TSCEE
T ss_pred EEEEcCCCCEEEEEECC-------CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc------CCEEE
Confidence 33443466677777652 26888988766665544433222222 33332 2 566677765 34688
Q ss_pred EEcCCCCcEEEcCCCCCCCcceeEEEE--C--CEEEEEcccccCCccCCcEEEEeCCCCCee-eccccccCCCceeEEEE
Q 040145 226 VLDPVKGNWRTIASMGTNMASYDAAVL--D--GKLLVTEGWLWPFFVSPRGQVYDPSTDNWE-SMAVGLREGWTGSSVVV 300 (402)
Q Consensus 226 ~yd~~t~~W~~~~~~~~~~~~~~~~~~--~--g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~~~~~~~~~ 300 (402)
+||..++.|..+..+.........+.+ + +.+++.|+.+ ..+.+||+.+..-. ..............+..
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~ 156 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDAHAIGVNSASWA 156 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCTTSCCCEEEEECCTTCEEEEEEC
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC------CcEEEEecCCCCceeeEEecCCCCceEEEEEc
Confidence 999999988766554443333333333 3 6677777653 36889998776322 11110111111111111
Q ss_pred --------------CCEEEEEeccCCcEEEEEeCCCC--ceeecCCCCCCccccCCeEEEE-eC---CEEEEEecCceee
Q 040145 301 --------------YEHLFVVSELERMKLKVYDPSTD--SWETIEGPPLPEQICKPFAVNA-CD---CRVYVVGRNLHVA 360 (402)
Q Consensus 301 --------------~~~l~~~gg~~~~~~~~yd~~~~--~W~~~~~~~~p~~~~~~~~~~~-~~---~~i~v~GG~~~~~ 360 (402)
++.+++.|+. ...+.+||..+. .+..+.. +......-.+++. .+ +.+++.|+.+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~--~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~- 232 (379)
T 3jrp_A 157 PATIEEDGEHNGTKESRKFVTGGA-DNLVKIWKYNSDAQTYVLEST--LEGHSDWVRDVAWSPTVLLRSYLASVSQDRT- 232 (379)
T ss_dssp CCC----------CTTCEEEEEET-TSCEEEEEEETTTTEEEEEEE--ECCCSSCEEEEEECCCCSSSEEEEEEETTSC-
T ss_pred CccccccccccCCCCCCEEEEEeC-CCeEEEEEecCCCcceeeEEE--EecccCcEeEEEECCCCCCCCeEEEEeCCCE-
Confidence 4677777775 446888887554 3444431 2211111223333 34 678888876544
Q ss_pred eEEEEecc
Q 040145 361 VGHITRLS 368 (402)
Q Consensus 361 ~~~v~~~~ 368 (402)
..+|.++
T Consensus 233 -i~iwd~~ 239 (379)
T 3jrp_A 233 -CIIWTQD 239 (379)
T ss_dssp -EEEEEES
T ss_pred -EEEEeCC
Confidence 3444444
No 66
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=97.29 E-value=0.02 Score=50.97 Aligned_cols=230 Identities=8% Similarity=0.021 Sum_probs=112.5
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEEECC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQ 182 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~ 182 (402)
.+.+|+.... ...+.+||+.+.+.......+. ... .+++..++ .+|+.+.. ...+++||+.
T Consensus 9 ~~~~~v~~~~----~~~v~~~d~~~~~~~~~~~~~~------~~~-~~~~s~dg~~l~~~~~~-------~~~i~~~d~~ 70 (331)
T 3u4y_A 9 SNFGIVVEQH----LRRISFFSTDTLEILNQITLGY------DFV-DTAITSDCSNVVVTSDF-------CQTLVQIETQ 70 (331)
T ss_dssp CCEEEEEEGG----GTEEEEEETTTCCEEEEEECCC------CEE-EEEECSSSCEEEEEEST-------TCEEEEEECS
T ss_pred CCEEEEEecC----CCeEEEEeCcccceeeeEEccC------Ccc-eEEEcCCCCEEEEEeCC-------CCeEEEEECC
Confidence 5677777633 3358899999888755433331 112 33443345 57777653 2389999999
Q ss_pred CCce-e-ecCCCcccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE-CCE-E
Q 040145 183 KNRW-T-VMNKMITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL-DGK-L 256 (402)
Q Consensus 183 t~~W-~-~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~-l 256 (402)
+++. . .+..-..+ .++++.. +..+| ++...+. ...+.+||..+++-...- +........+.. +|+ +
T Consensus 71 ~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~-~~~~~~~---~~~i~v~d~~~~~~~~~~--~~~~~~~~~~~spdg~~l 142 (331)
T 3u4y_A 71 LEPPKVVAIQEGQSS--MADVDITPDDQFAV-TVTGLNH---PFNMQSYSFLKNKFISTI--PIPYDAVGIAISPNGNGL 142 (331)
T ss_dssp SSSCEEEEEEECSSC--CCCEEECTTSSEEE-ECCCSSS---SCEEEEEETTTTEEEEEE--ECCTTEEEEEECTTSSCE
T ss_pred CCceeEEecccCCCC--ccceEECCCCCEEE-EecCCCC---cccEEEEECCCCCeEEEE--ECCCCccceEECCCCCEE
Confidence 8874 2 22211111 1213332 33566 4332110 237999999988754331 111112233332 554 7
Q ss_pred EEEcccccCCccCCc-EEEEeCCCCC-eeec-cccccCCCceeEEEE--CCE-EEEEeccCCcEEEEEeCCCCce-eecC
Q 040145 257 LVTEGWLWPFFVSPR-GQVYDPSTDN-WESM-AVGLREGWTGSSVVV--YEH-LFVVSELERMKLKVYDPSTDSW-ETIE 329 (402)
Q Consensus 257 y~~gG~~~~~~~~~~-~~~yd~~~~~-W~~~-~~~~~~~~~~~~~~~--~~~-l~~~gg~~~~~~~~yd~~~~~W-~~~~ 329 (402)
|+.+... .. +.+||...+. .... ....+.......+.+ +|+ +|+.+. ....+.+||+.+.+. ..+.
T Consensus 143 ~~~~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~-~~~~v~v~d~~~~~~~~~~~ 215 (331)
T 3u4y_A 143 ILIDRSS------ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL-IGNSIGILETQNPENITLLN 215 (331)
T ss_dssp EEEEETT------TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET-TTTEEEEEECSSTTSCEEEE
T ss_pred EEEecCC------CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC-CCCeEEEEECCCCcccceee
Confidence 7765431 24 7777765432 1111 111111111122333 565 666543 366899999987764 1122
Q ss_pred CCCCCccccCCeEEEEeCCE-EEEEecCceeeeEEEEecccccc
Q 040145 330 GPPLPEQICKPFAVNACDCR-VYVVGRNLHVAVGHITRLSTSEK 372 (402)
Q Consensus 330 ~~~~p~~~~~~~~~~~~~~~-i~v~GG~~~~~~~~v~~~~~~~~ 372 (402)
.++.. ..........+++ ||+..... +.+..+|....
T Consensus 216 ~~~~~--~~~~~~~~spdg~~l~v~~~~~----~~i~~~d~~~~ 253 (331)
T 3u4y_A 216 AVGTN--NLPGTIVVSRDGSTVYVLTEST----VDVFNFNQLSG 253 (331)
T ss_dssp EEECS--SCCCCEEECTTSSEEEEECSSE----EEEEEEETTTT
T ss_pred eccCC--CCCceEEECCCCCEEEEEEcCC----CEEEEEECCCC
Confidence 11111 1111223334555 66665533 33666776443
No 67
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.07 Score=49.99 Aligned_cols=201 Identities=8% Similarity=-0.012 Sum_probs=102.1
Q ss_pred eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceee--cCCCcccc-cceEEEE-EC---CEEEEEcCCCCCCCCC
Q 040145 149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTV--MNKMITAR-SFFASGV-IG---GMIYVAGGSSADLFEL 221 (402)
Q Consensus 149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~--~~~~~~~r-~~~~~~~-~~---~~iyv~GG~~~~~~~~ 221 (402)
.++.+..++..+++|+. ...+++|+..+..... ...+.... .-.+++. -+ +++++.|+. -
T Consensus 153 ~~~~~sp~~~~l~~~~~-------~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~------d 219 (450)
T 2vdu_B 153 NAISIAEDDTTVIIADK-------FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR------D 219 (450)
T ss_dssp EEEEECTTSSEEEEEET-------TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET------T
T ss_pred eEEEEcCCCCEEEEEeC-------CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC------C
Confidence 34444446666666654 2368899987665332 11222111 1122333 35 677777775 3
Q ss_pred CeeEEEcCCCCcEEEcCCCCCCCcceeEEEE-CCEEEEEcccccCCccCCcEEEEeCCCCCeee-cccc-----c-----
Q 040145 222 DSAEVLDPVKGNWRTIASMGTNMASYDAAVL-DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES-MAVG-----L----- 289 (402)
Q Consensus 222 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~-~~~~-----~----- 289 (402)
..+.+||..+......- +.........+.+ ++.+++.|+.+ ..+.+||..+++-.. +... .
T Consensus 220 ~~i~vwd~~~~~~~~~~-~~~h~~~v~~~~~sd~~~l~s~~~d------~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (450)
T 2vdu_B 220 EHIKISHYPQCFIVDKW-LFGHKHFVSSICCGKDYLLLSAGGD------DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQH 292 (450)
T ss_dssp SCEEEEEESCTTCEEEE-CCCCSSCEEEEEECSTTEEEEEESS------SEEEEEETTTCCEEEEEECHHHHGGGCCTTS
T ss_pred CcEEEEECCCCceeeee-ecCCCCceEEEEECCCCEEEEEeCC------CeEEEEECCCCcEeeeecchhhhhhhhhhcc
Confidence 46888898776532210 1111111122222 77777777743 378899998876332 1100 0
Q ss_pred ------------cCCCceeEEEE--CCEEEEEeccCCcEEEEEeC--CC-CceeecCCCCCCccccCCeEEEEeCCEEEE
Q 040145 290 ------------REGWTGSSVVV--YEHLFVVSELERMKLKVYDP--ST-DSWETIEGPPLPEQICKPFAVNACDCRVYV 352 (402)
Q Consensus 290 ------------~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~--~~-~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v 352 (402)
.....-..+.. +++.+++++.....+.+||. .+ ..+..+..+... ....+++...+.+++
T Consensus 293 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v 369 (450)
T 2vdu_B 293 LAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQV 369 (450)
T ss_dssp BC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEE
T ss_pred cccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEE
Confidence 00011111222 45555555534567888887 33 445555422222 223455566677777
Q ss_pred EecCce-----eeeEEEEecccccc
Q 040145 353 VGRNLH-----VAVGHITRLSTSEK 372 (402)
Q Consensus 353 ~GG~~~-----~~~~~v~~~~~~~~ 372 (402)
..+... .....++.++...+
T Consensus 370 ~~~~~~~~~~~~~~i~v~~~~~~~~ 394 (450)
T 2vdu_B 370 TLDNKESSGVQKNFAKFIEYNLNEN 394 (450)
T ss_dssp EECCTTCCSSCCCSEEEEEEETTTT
T ss_pred EEecccCCCCCCcceEEEEEEcCCC
Confidence 766542 23357888776554
No 68
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.27 E-value=0.032 Score=48.28 Aligned_cols=164 Identities=14% Similarity=0.108 Sum_probs=98.2
Q ss_pred eEEEEEC-CEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeC
Q 040145 199 FASGVIG-GMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDP 277 (402)
Q Consensus 199 ~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~ 277 (402)
+++...+ +.+|+..|..+ .+.+.++|+.|++-..--+++......+.+..+++||+..-. .+.+.+||+
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~----~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~------~~~v~viD~ 93 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG----RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWL------KNIGFIYDR 93 (266)
T ss_dssp EEEEECSTTEEEEEECSTT----TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETT------CSEEEEEET
T ss_pred ccEEEeCCCeEEEECCCCC----CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEec------CCEEEEEEC
Confidence 5666655 79999877422 467999999999854433344433445566678899998643 357999999
Q ss_pred CCCCe-eeccccccCCCceeEEEE-CCEEEEEeccCCcEEEEEeCCCCcee-ecCCCCCCccccCCeEEEEeCCEEEEEe
Q 040145 278 STDNW-ESMAVGLREGWTGSSVVV-YEHLFVVSELERMKLKVYDPSTDSWE-TIEGPPLPEQICKPFAVNACDCRVYVVG 354 (402)
Q Consensus 278 ~~~~W-~~~~~~~~~~~~~~~~~~-~~~l~~~gg~~~~~~~~yd~~~~~W~-~~~~~~~p~~~~~~~~~~~~~~~i~v~G 354 (402)
++.+= .+++...+ .+..... ++++|+..| .+.+.++|+++.+=. .+..-..+........+...+++||+--
T Consensus 94 ~t~~v~~~i~~g~~---~g~glt~Dg~~l~vs~g--s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~ 168 (266)
T 2iwa_A 94 RTLSNIKNFTHQMK---DGWGLATDGKILYGSDG--TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANI 168 (266)
T ss_dssp TTTEEEEEEECCSS---SCCEEEECSSSEEEECS--SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred CCCcEEEEEECCCC---CeEEEEECCCEEEEECC--CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEec
Confidence 87642 22332112 2233333 466887654 569999999886532 2221011111122234445588998764
Q ss_pred cCceeeeEEEEecccccccCceeeeEEEEe
Q 040145 355 RNLHVAVGHITRLSTSEKKWSFSVQWQVVD 384 (402)
Q Consensus 355 G~~~~~~~~v~~~~~~~~~~~~~~~W~~~~ 384 (402)
.. .++|.+.|+... +-..|..+.
T Consensus 169 ~~----~~~V~vID~~tg---~V~~~I~~~ 191 (266)
T 2iwa_A 169 WQ----TDCIARISAKDG---TLLGWILLP 191 (266)
T ss_dssp TT----SSEEEEEETTTC---CEEEEEECH
T ss_pred CC----CCeEEEEECCCC---cEEEEEECC
Confidence 32 246888888655 344555543
No 69
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.27 E-value=0.058 Score=48.08 Aligned_cols=203 Identities=15% Similarity=0.112 Sum_probs=103.5
Q ss_pred eEEEeecCCCcEEe-CCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccc-cc
Q 040145 120 QWQVLDLTHYCWHT-IPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITA-RS 197 (402)
Q Consensus 120 ~~~~~d~~~~~W~~-l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~-r~ 197 (402)
.+.++|..+.+-.. +..-+ .....+++..++..++.|+.+ ..+.+||..+++-... +... ..
T Consensus 103 ~i~lWd~~~~~~~~~~~~~~-------~~~~~~~~spdg~~l~~g~~d-------g~v~i~~~~~~~~~~~--~~~~~~~ 166 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDAGP-------VDAWTLAFSPDSQYLATGTHV-------GKVNIFGVESGKKEYS--LDTRGKF 166 (321)
T ss_dssp EEEEEETTTTEEEEEEECCT-------TCCCCEEECTTSSEEEEECTT-------SEEEEEETTTCSEEEE--EECSSSC
T ss_pred cEEEEECCCCCEEEEEeCCC-------ccEEEEEECCCCCEEEEEcCC-------CcEEEEEcCCCceeEE--ecCCCce
Confidence 46788887765422 21111 111223333467777777652 3788999887653221 1111 11
Q ss_pred ceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEE
Q 040145 198 FFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQV 274 (402)
Q Consensus 198 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~ 274 (402)
..+++.. +++.++.|+. ...+.+||..+++-... +.........+.+ ++.+++.|+.+ ..+.+
T Consensus 167 v~~~~~spdg~~lasg~~------dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~spd~~~l~s~s~d------g~i~i 232 (321)
T 3ow8_A 167 ILSIAYSPDGKYLASGAI------DGIINIFDIATGKLLHT--LEGHAMPIRSLTFSPDSQLLVTASDD------GYIKI 232 (321)
T ss_dssp EEEEEECTTSSEEEEEET------TSCEEEEETTTTEEEEE--ECCCSSCCCEEEECTTSCEEEEECTT------SCEEE
T ss_pred EEEEEECCCCCEEEEEcC------CCeEEEEECCCCcEEEE--EcccCCceeEEEEcCCCCEEEEEcCC------CeEEE
Confidence 1222222 5667777765 34688999988753221 1111111222223 67777777753 36889
Q ss_pred EeCCCCCeeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE-eCCEEE
Q 040145 275 YDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA-CDCRVY 351 (402)
Q Consensus 275 yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~~i~ 351 (402)
||..+..-...-. .....-..+.+ ++..++.|+. ...+.+||..+.+-... +......-.++.. .+++.+
T Consensus 233 wd~~~~~~~~~~~--~h~~~v~~~~~sp~~~~l~s~s~-D~~v~iwd~~~~~~~~~----~~~h~~~v~~v~~s~~g~~l 305 (321)
T 3ow8_A 233 YDVQHANLAGTLS--GHASWVLNVAFCPDDTHFVSSSS-DKSVKVWDVGTRTCVHT----FFDHQDQVWGVKYNGNGSKI 305 (321)
T ss_dssp EETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTTTEEEEE----ECCCSSCEEEEEECTTSSEE
T ss_pred EECCCcceeEEEc--CCCCceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCEEEEE----EcCCCCcEEEEEECCCCCEE
Confidence 9988765432211 11111112233 5677777665 45799999987643322 1111011123333 466777
Q ss_pred EEecCcee
Q 040145 352 VVGRNLHV 359 (402)
Q Consensus 352 v~GG~~~~ 359 (402)
+.||.+..
T Consensus 306 ~s~~~d~~ 313 (321)
T 3ow8_A 306 VSVGDDQE 313 (321)
T ss_dssp EEEETTCC
T ss_pred EEEeCCCe
Confidence 77776544
No 70
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=97.25 E-value=0.03 Score=49.33 Aligned_cols=222 Identities=14% Similarity=0.080 Sum_probs=109.7
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccC-CEEEEEeCccCCCCCCCceEEEEECCCCceeec-CCCccc--
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPRE-GTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVM-NKMITA-- 195 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~-~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~-~~~~~~-- 195 (402)
.+++||+.++++..+.. +... .........++..+ +.||+.... +.+++||+. ++.+.+ ......
T Consensus 47 ~i~~~d~~~g~~~~~~~-~~~~-~~~~~~~~i~~~~~~g~l~v~~~~--------~~l~~~d~~-g~~~~~~~~~~~~~~ 115 (314)
T 1pjx_A 47 EILRIDLKTGKKTVICK-PEVN-GYGGIPAGCQCDRDANQLFVADMR--------LGLLVVQTD-GTFEEIAKKDSEGRR 115 (314)
T ss_dssp EEEEECTTTCCEEEEEC-CEET-TEECCEEEEEECSSSSEEEEEETT--------TEEEEEETT-SCEEECCSBCTTSCB
T ss_pred EEEEEeCCCCcEEEEEe-cccC-CCCCCCceEEEecCCCcEEEEECC--------CCEEEEeCC-CCEEEEEeccCCCcc
Confidence 48889988888765532 1000 00011223334345 788887642 269999998 776655 322111
Q ss_pred -ccceEEEE-ECCEEEEEcCCC---------CCCCCCCeeEEEcCCCCcEEEcC-CCCCCCcceeEEEE-----CC-EEE
Q 040145 196 -RSFFASGV-IGGMIYVAGGSS---------ADLFELDSAEVLDPVKGNWRTIA-SMGTNMASYDAAVL-----DG-KLL 257 (402)
Q Consensus 196 -r~~~~~~~-~~~~iyv~GG~~---------~~~~~~~~~~~yd~~t~~W~~~~-~~~~~~~~~~~~~~-----~g-~ly 257 (402)
.....++. -++++|+..... ........+++||+. ++...+. ....+ ...+.. ++ .+|
T Consensus 116 ~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~---~~i~~~~~~d~dg~~l~ 191 (314)
T 1pjx_A 116 MQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFP---NGIAVRHMNDGRPYQLI 191 (314)
T ss_dssp CBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSE---EEEEEEECTTSCEEEEE
T ss_pred ccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCc---ceEEEecccCCCCCEEE
Confidence 11223333 357888875432 011113578899987 5554431 11111 122222 34 467
Q ss_pred EEcccccCCccCCcEEEEeCC-CCCeeeccc--cccCC--CceeEEE--ECCEEEEEeccCCcEEEEEeCCCCceeecCC
Q 040145 258 VTEGWLWPFFVSPRGQVYDPS-TDNWESMAV--GLREG--WTGSSVV--VYEHLFVVSELERMKLKVYDPSTDSWETIEG 330 (402)
Q Consensus 258 ~~gG~~~~~~~~~~~~~yd~~-~~~W~~~~~--~~~~~--~~~~~~~--~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~ 330 (402)
+.... ...+.+||+. +++...... ..+.. .....+. -+|.+|+.... ...+.+||+++.+....-
T Consensus 192 v~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~-~~~i~~~d~~~g~~~~~~- 263 (314)
T 1pjx_A 192 VAETP------TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-SSHIEVFGPDGGQPKMRI- 263 (314)
T ss_dssp EEETT------TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-TTEEEEECTTCBSCSEEE-
T ss_pred EEECC------CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC-CCEEEEEcCCCCcEeEEE-
Confidence 76432 2468889876 443322111 01111 1111222 36888876432 458999999854432211
Q ss_pred CCCCccccCCeEEEE-eCCE-EEEEecCceeeeEEEEeccccc
Q 040145 331 PPLPEQICKPFAVNA-CDCR-VYVVGRNLHVAVGHITRLSTSE 371 (402)
Q Consensus 331 ~~~p~~~~~~~~~~~-~~~~-i~v~GG~~~~~~~~v~~~~~~~ 371 (402)
..+. ....+++. .+++ ||+..... +.++.+++..
T Consensus 264 -~~~~--~~~~~i~~~~dg~~l~v~~~~~----~~l~~~~~~~ 299 (314)
T 1pjx_A 264 -RCPF--EKPSNLHFKPQTKTIFVTEHEN----NAVWKFEWQR 299 (314)
T ss_dssp -ECSS--SCEEEEEECTTSSEEEEEETTT----TEEEEEECSS
T ss_pred -eCCC--CCceeEEECCCCCEEEEEeCCC----CeEEEEeCCC
Confidence 2221 22233433 3555 87776543 2477777543
No 71
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.25 E-value=0.059 Score=48.52 Aligned_cols=185 Identities=9% Similarity=0.084 Sum_probs=91.1
Q ss_pred EEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCc-eeecCCCccc--cc
Q 040145 121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNR-WTVMNKMITA--RS 197 (402)
Q Consensus 121 ~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~-W~~~~~~~~~--r~ 197 (402)
+.+||..+.++.....+.... ....++.+..++..++.|+.+ ..+.+||..++. |........+ ..
T Consensus 76 i~vwd~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~d-------~~v~i~d~~~~~~~~~~~~~~~~~~~~ 144 (372)
T 1k8k_C 76 AYVWTLKGRTWKPTLVILRIN----RAARCVRWAPNEKKFAVGSGS-------RVISICYFEQENDWWVCKHIKKPIRST 144 (372)
T ss_dssp EEEEEEETTEEEEEEECCCCS----SCEEEEEECTTSSEEEEEETT-------SSEEEEEEETTTTEEEEEEECTTCCSC
T ss_pred EEEEECCCCeeeeeEEeecCC----CceeEEEECCCCCEEEEEeCC-------CEEEEEEecCCCcceeeeeeecccCCC
Confidence 778888887765432222111 223444444466677777652 257788877654 3222211111 11
Q ss_pred ceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCc---------E-------EEcCCCCCCCcceeEEEE--CCEEEE
Q 040145 198 FFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGN---------W-------RTIASMGTNMASYDAAVL--DGKLLV 258 (402)
Q Consensus 198 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~---------W-------~~~~~~~~~~~~~~~~~~--~g~ly~ 258 (402)
-.++... ++..++.|+. ...+.+||..... | ..+..+.........+.+ ++..++
T Consensus 145 i~~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 218 (372)
T 1k8k_C 145 VLSLDWHPNSVLLAAGSC------DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA 218 (372)
T ss_dssp EEEEEECTTSSEEEEEET------TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred eeEEEEcCCCCEEEEEcC------CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence 2222332 4566677765 3457888854211 1 111112211122223333 566666
Q ss_pred EcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCC--CceeecCC
Q 040145 259 TEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPST--DSWETIEG 330 (402)
Q Consensus 259 ~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~--~~W~~~~~ 330 (402)
.|+.+ ..+..||..+.+-...-......-......-++.+++.| . ...+.+||..+ ++|..+..
T Consensus 219 ~~~~d------~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~i~~~~~~~~~~~~~~~ 284 (372)
T 1k8k_C 219 WVSHD------STVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-H-DCFPVLFTYDSAAGKLSFGGR 284 (372)
T ss_dssp EEETT------TEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-T-TSSCEEEEEETTTTEEEECCC
T ss_pred EEeCC------CEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-e-CCeEEEEEccCcCceEEEeec
Confidence 66643 368899988765322111111111111223477766665 3 45677777776 88876643
No 72
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=97.23 E-value=0.054 Score=50.33 Aligned_cols=185 Identities=9% Similarity=-0.007 Sum_probs=102.0
Q ss_pred eeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCE-EEEEeCccCCCCCCCceEEEEECCCCceeecCCCccccc
Q 040145 119 IQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGT-LFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARS 197 (402)
Q Consensus 119 ~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~-i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~ 197 (402)
..++++|..+.+...+...+ ..........+++ |++.+..+ ....++++|..+++.+.+..... .
T Consensus 203 ~~i~~~d~~tg~~~~l~~~~-------~~~~~~~~spdg~~la~~~~~~-----g~~~i~~~d~~~~~~~~l~~~~~--~ 268 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVASFP-------RHNGAPAFSPDGSKLAFALSKT-----GSLNLYVMDLASGQIRQVTDGRS--N 268 (415)
T ss_dssp CEEEEEETTTCCEEEEECCS-------SCEEEEEECTTSSEEEEEECTT-----SSCEEEEEETTTCCEEECCCCSS--C
T ss_pred cEEEEEECCCCcEEEeecCC-------CcccCEEEcCCCCEEEEEEecC-----CCceEEEEECCCCCEEeCcCCCC--c
Confidence 46788888887766554332 2233444444554 55455432 23479999999988766543221 1
Q ss_pred ceEEEEE-CCE-EEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEE
Q 040145 198 FFASGVI-GGM-IYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQ 273 (402)
Q Consensus 198 ~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~ 273 (402)
....... +++ |++.+..++ ...++++|..++.-..+... . .......+ +|+.+++++..+. ...++
T Consensus 269 ~~~~~~spdg~~l~~~s~~~g----~~~i~~~d~~~~~~~~l~~~--~-~~~~~~~~spdG~~l~~~~~~~g---~~~i~ 338 (415)
T 2hqs_A 269 NTEPTWFPDSQNLAFTSDQAG----RPQVYKVNINGGAPQRITWE--G-SQNQDADVSSDGKFMVMVSSNGG---QQHIA 338 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTS----SCEEEEEETTSSCCEECCCS--S-SEEEEEEECTTSSEEEEEEECSS---CEEEE
T ss_pred ccceEECCCCCEEEEEECCCC----CcEEEEEECCCCCEEEEecC--C-CcccCeEECCCCCEEEEEECcCC---ceEEE
Confidence 1222222 444 444443221 35788999988765544221 1 11222222 6665555543211 23789
Q ss_pred EEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCC--cEEEEEeCCCCceeecC
Q 040145 274 VYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELER--MKLKVYDPSTDSWETIE 329 (402)
Q Consensus 274 ~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~--~~~~~yd~~~~~W~~~~ 329 (402)
.+|+.+++...+... . ........-+|+.+++++.+. ..++.+|...+....+.
T Consensus 339 ~~d~~~~~~~~l~~~-~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~ 394 (415)
T 2hqs_A 339 KQDLATGGVQVLSST-F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP 394 (415)
T ss_dssp EEETTTCCEEECCCS-S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECC
T ss_pred EEECCCCCEEEecCC-C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEee
Confidence 999999887666542 1 111111223677666666543 37999999877666654
No 73
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.22 E-value=0.024 Score=52.87 Aligned_cols=179 Identities=12% Similarity=0.037 Sum_probs=97.5
Q ss_pred EEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCC
Q 040145 152 SIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVK 231 (402)
Q Consensus 152 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t 231 (402)
++..++..++.|+.+ ..+.+||..+++-... +............++.+++.|+. ...+.+||..+
T Consensus 138 ~~~~d~~~l~~g~~d-------g~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~l~sg~~------dg~i~vwd~~~ 202 (435)
T 1p22_A 138 CLQYDDQKIVSGLRD-------NTIKIWDKNTLECKRI--LTGHTGSVLCLQYDERVIITGSS------DSTVRVWDVNT 202 (435)
T ss_dssp EEECCSSEEEEEESS-------SCEEEEESSSCCEEEE--ECCCSSCEEEEECCSSEEEEEET------TSCEEEEESSS
T ss_pred EEEECCCEEEEEeCC-------CeEEEEeCCCCeEEEE--EcCCCCcEEEEEECCCEEEEEcC------CCeEEEEECCC
Confidence 333477788888763 3799999988753322 11111222333347777788876 34688999988
Q ss_pred CcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeecccccc-CCCceeEEEECCEEEEEecc
Q 040145 232 GNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLR-EGWTGSSVVVYEHLFVVSEL 310 (402)
Q Consensus 232 ~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~-~~~~~~~~~~~~~l~~~gg~ 310 (402)
+.-... +.........+..++..++.|+.+ ..+.+||..+..-........ ....-.++..++..++.|+.
T Consensus 203 ~~~~~~--~~~h~~~v~~l~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~ 274 (435)
T 1p22_A 203 GEMLNT--LIHHCEAVLHLRFNNGMMVTCSKD------RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASG 274 (435)
T ss_dssp CCEEEE--ECCCCSCEEEEECCTTEEEEEETT------SCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEET
T ss_pred CcEEEE--EcCCCCcEEEEEEcCCEEEEeeCC------CcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeC
Confidence 764321 222222333444456666666653 368899988765321111011 11111224446776666665
Q ss_pred CCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCcee
Q 040145 311 ERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHV 359 (402)
Q Consensus 311 ~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~ 359 (402)
...+.+||..+.+-...- ... ......+..++.+++.|+.++.
T Consensus 275 -dg~i~vwd~~~~~~~~~~--~~~---~~~v~~~~~~~~~l~~g~~dg~ 317 (435)
T 1p22_A 275 -DRTIKVWNTSTCEFVRTL--NGH---KRGIACLQYRDRLVVSGSSDNT 317 (435)
T ss_dssp -TSEEEEEETTTCCEEEEE--ECC---SSCEEEEEEETTEEEEEETTSC
T ss_pred -CCeEEEEECCcCcEEEEE--cCC---CCcEEEEEeCCCEEEEEeCCCe
Confidence 557999999876433211 111 1222334456777777776544
No 74
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.21 E-value=0.023 Score=50.16 Aligned_cols=182 Identities=9% Similarity=0.049 Sum_probs=91.7
Q ss_pred EEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEc
Q 040145 150 CVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLD 228 (402)
Q Consensus 150 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd 228 (402)
++.+..++..++.|+.+ ..+.+||..+++....-.- ....-..++.. ++++++.|+. ...+.+||
T Consensus 28 ~~~~s~~~~~l~s~~~d-------g~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~------d~~i~vwd 93 (312)
T 4ery_A 28 SVKFSPNGEWLASSSAD-------KLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSNLLVSASD------DKTLKIWD 93 (312)
T ss_dssp EEEECTTSSEEEEEETT-------SCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEET------TSEEEEEE
T ss_pred EEEECCCCCEEEEeeCC-------CeEEEEeCCCcccchhhcc-CCCceEEEEEcCCCCEEEEECC------CCEEEEEE
Confidence 33443466677777652 2688899888765442110 11111222222 4566677765 45688999
Q ss_pred CCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CCEE
Q 040145 229 PVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEHL 304 (402)
Q Consensus 229 ~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l 304 (402)
..++.-... +.........+.+ ++.+++.|+.+ ..+..||+.+++-...-..... .-..+.+ ++.+
T Consensus 94 ~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~ 163 (312)
T 4ery_A 94 VSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFD------ESVRIWDVKTGKCLKTLPAHSD--PVSAVHFNRDGSL 163 (312)
T ss_dssp TTTCCEEEE--EECCSSCEEEEEECSSSSEEEEEETT------SCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSE
T ss_pred CCCCcEEEE--EcCCCCCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCEEEEEecCCCC--cEEEEEEcCCCCE
Confidence 887653221 1111111222222 56666777653 3688999987653221110111 1112222 5677
Q ss_pred EEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCce
Q 040145 305 FVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLH 358 (402)
Q Consensus 305 ~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~ 358 (402)
++.|+. ...+.+||..+.+-...- ...............+++.++.|+.++
T Consensus 164 l~~~~~-d~~i~~wd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~d~ 214 (312)
T 4ery_A 164 IVSSSY-DGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDN 214 (312)
T ss_dssp EEEEET-TSCEEEEETTTCCEEEEE--CCSSCCCEEEEEECTTSSEEEEEETTT
T ss_pred EEEEeC-CCcEEEEECCCCceeeEE--eccCCCceEEEEECCCCCEEEEEcCCC
Confidence 777765 457999999876543221 111100111122234667777776554
No 75
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=97.18 E-value=0.026 Score=49.74 Aligned_cols=216 Identities=13% Similarity=0.063 Sum_probs=110.0
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK 183 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t 183 (402)
++.+|+.. .....+++||+.++....+. .+ ..-...++..++.+|+..+ ..+++||+.+
T Consensus 24 ~~~l~~~d----~~~~~i~~~d~~~~~~~~~~-~~-------~~~~~i~~~~dG~l~v~~~---------~~l~~~d~~~ 82 (297)
T 3g4e_A 24 SNSLLFVD----IPAKKVCRWDSFTKQVQRVT-MD-------APVSSVALRQSGGYVATIG---------TKFCALNWKE 82 (297)
T ss_dssp TTEEEEEE----TTTTEEEEEETTTCCEEEEE-CS-------SCEEEEEEBTTSSEEEEET---------TEEEEEETTT
T ss_pred CCEEEEEE----CCCCEEEEEECCCCcEEEEe-CC-------CceEEEEECCCCCEEEEEC---------CeEEEEECCC
Confidence 46677765 23345889999887654432 12 1223444445677776532 2799999999
Q ss_pred CceeecCCCcc--cccceEEEE--ECCEEEEEcCCCC-----CCCCCCeeEEEcCCCCcEEEc-CCCCCCCcceeEEEE-
Q 040145 184 NRWTVMNKMIT--ARSFFASGV--IGGMIYVAGGSSA-----DLFELDSAEVLDPVKGNWRTI-ASMGTNMASYDAAVL- 252 (402)
Q Consensus 184 ~~W~~~~~~~~--~r~~~~~~~--~~~~iyv~GG~~~-----~~~~~~~~~~yd~~t~~W~~~-~~~~~~~~~~~~~~~- 252 (402)
++++.+..... +........ -++++|+..-... .......++.||+.. ....+ ..+. ......+
T Consensus 83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~----~pngi~~s 157 (297)
T 3g4e_A 83 QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVD----ISNGLDWS 157 (297)
T ss_dssp TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEES----BEEEEEEC
T ss_pred CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeeccc----cccceEEc
Confidence 98876543321 111122222 2577777431111 011145688888753 33322 1111 1222333
Q ss_pred -CC-EEEEEcccccCCccCCcEEEEeC--CCCCeeeccc--cccC--CC-ceeEEEECCEEEEEeccCCcEEEEEeCCCC
Q 040145 253 -DG-KLLVTEGWLWPFFVSPRGQVYDP--STDNWESMAV--GLRE--GW-TGSSVVVYEHLFVVSELERMKLKVYDPSTD 323 (402)
Q Consensus 253 -~g-~ly~~gG~~~~~~~~~~~~~yd~--~~~~W~~~~~--~~~~--~~-~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~ 323 (402)
++ .+|+.... .+.+++||. .++....... ..+. .. .+.++--+|+||+... ....|.+||+++.
T Consensus 158 pdg~~lyv~~~~------~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~-~~~~v~~~d~~tG 230 (297)
T 3g4e_A 158 LDHKIFYYIDSL------SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACY-NGGRVIRLDPVTG 230 (297)
T ss_dssp TTSCEEEEEEGG------GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEE-TTTEEEEECTTTC
T ss_pred CCCCEEEEecCC------CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEc-CCCEEEEEcCCCc
Confidence 44 57877543 246788875 5555432111 0111 11 1112223788887643 3557999999876
Q ss_pred ceeecCCCCCCccccCCeEEEEe---CCEEEEEecC
Q 040145 324 SWETIEGPPLPEQICKPFAVNAC---DCRVYVVGRN 356 (402)
Q Consensus 324 ~W~~~~~~~~p~~~~~~~~~~~~---~~~i~v~GG~ 356 (402)
+....- .+|. ....+++.- ++.|||....
T Consensus 231 ~~~~~i--~~p~--~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 231 KRLQTV--KLPV--DKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp CEEEEE--ECSS--SBEEEEEEESGGGCEEEEEEBC
T ss_pred eEEEEE--ECCC--CCceEEEEeCCCCCEEEEEcCC
Confidence 544332 2442 122233332 2478988764
No 76
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=97.17 E-value=0.021 Score=51.37 Aligned_cols=240 Identities=10% Similarity=0.053 Sum_probs=111.2
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECC-
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQ- 182 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~- 182 (402)
++.+|+.... .....+.+||..+.++..+....... ......+....+..||+.+.. ...+.+||..
T Consensus 50 dg~l~~~~~~--~~~~~v~~~~~~~g~~~~~~~~~~~~---~~p~~~a~spdg~~l~~~~~~-------~~~v~v~~~~~ 117 (347)
T 3hfq_A 50 KDCLYSVDKE--DDEGGIAAWQIDGQTAHKLNTVVAPG---TPPAYVAVDEARQLVYSANYH-------KGTAEVMKIAA 117 (347)
T ss_dssp TCEEEEEEEE--TTEEEEEEEEEETTEEEEEEEEEEES---CCCSEEEEETTTTEEEEEETT-------TTEEEEEEECT
T ss_pred CCeEEEEEec--CCCceEEEEEecCCcEEEeeeeecCC---CCCEEEEECCCCCEEEEEeCC-------CCEEEEEEeCC
Confidence 4557776543 12345888888777766554321111 011223333223457766532 2368888874
Q ss_pred CCceeecCCCcc------cc----cceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCC-CCcEEEcCCCCCC-CcceeE
Q 040145 183 KNRWTVMNKMIT------AR----SFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPV-KGNWRTIASMGTN-MASYDA 249 (402)
Q Consensus 183 t~~W~~~~~~~~------~r----~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~-t~~W~~~~~~~~~-~~~~~~ 249 (402)
+++.+.+..... +| ..+.++.. ++++|+.+.. ...+.+||.. ++....+...... ......
T Consensus 118 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~------~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~ 191 (347)
T 3hfq_A 118 DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG------SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRH 191 (347)
T ss_dssp TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT------TTEEEEEEECTTSCEEEEEEEECCTTCCEEE
T ss_pred CCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC------CCEEEEEEECCCCcEEEeeeEEcCCCCCCce
Confidence 444433322111 11 12223332 5667776543 3578889987 5555543221111 111222
Q ss_pred EEE--CCE-EEEEcccccCCccCCcEEEEeCC--CCCeeeccc--cccCC----CceeEEEE--CCE-EEEEeccCCcEE
Q 040145 250 AVL--DGK-LLVTEGWLWPFFVSPRGQVYDPS--TDNWESMAV--GLREG----WTGSSVVV--YEH-LFVVSELERMKL 315 (402)
Q Consensus 250 ~~~--~g~-ly~~gG~~~~~~~~~~~~~yd~~--~~~W~~~~~--~~~~~----~~~~~~~~--~~~-l~~~gg~~~~~~ 315 (402)
+.+ +|+ +|+.+... ..+.+||.. ++++..+.. ..+.. .....+.+ +|+ ||+... ..+.+
T Consensus 192 ~~~spdg~~l~v~~~~~------~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~-~~~~v 264 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGELS------SQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNR-GYNTL 264 (347)
T ss_dssp EEECTTSSEEEEEETTT------TEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEE-TTTEE
T ss_pred EEECCCCCEEEEEeCCC------CEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeC-CCCEE
Confidence 222 665 77765432 245556554 566654332 11211 11112333 565 666543 35678
Q ss_pred EEEeCCCC-ceeecCCCCCCccccCCeEEEE-eCCE-EEEEecCceeeeEEEEecccccc
Q 040145 316 KVYDPSTD-SWETIEGPPLPEQICKPFAVNA-CDCR-VYVVGRNLHVAVGHITRLSTSEK 372 (402)
Q Consensus 316 ~~yd~~~~-~W~~~~~~~~p~~~~~~~~~~~-~~~~-i~v~GG~~~~~~~~v~~~~~~~~ 372 (402)
.+||...+ +++.+...+.. ......++. .+++ ||+.+...+. ..+|.+|+...
T Consensus 265 ~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~--v~v~~~d~~tg 320 (347)
T 3hfq_A 265 AVFAVTADGHLTLIQQISTE--GDFPRDFDLDPTEAFVVVVNQNTDN--ATLYARDLTSG 320 (347)
T ss_dssp EEEEECGGGCEEEEEEEECS--SSCCCEEEECTTSSEEEEEETTTTE--EEEEEECTTTC
T ss_pred EEEEECCCCcEEEeEEEecC--CCCcCeEEECCCCCEEEEEEcCCCc--EEEEEEeCCCC
Confidence 88887632 45554422221 112223333 4555 6665543332 44555565443
No 77
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=97.17 E-value=0.072 Score=47.94 Aligned_cols=190 Identities=9% Similarity=0.097 Sum_probs=96.5
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK 183 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t 183 (402)
++.+++.++.+. .+.+||....+|.....+... ......++++..++..++.|+.+ ..+.+||..+
T Consensus 27 ~g~~las~~~D~----~i~iw~~~~~~~~~~~~~~~~---h~~~v~~~~~sp~g~~l~s~s~D-------~~v~iw~~~~ 92 (345)
T 3fm0_A 27 AGTLLASCGGDR----RIRIWGTEGDSWICKSVLSEG---HQRTVRKVAWSPCGNYLASASFD-------ATTCIWKKNQ 92 (345)
T ss_dssp TSSCEEEEETTS----CEEEEEEETTEEEEEEEECSS---CSSCEEEEEECTTSSEEEEEETT-------SCEEEEEECC
T ss_pred CCCEEEEEcCCC----eEEEEEcCCCcceeeeeeccc---cCCcEEEEEECCCCCEEEEEECC-------CcEEEEEccC
Confidence 344455554332 367788877776432211100 01223445554567777888763 2578888877
Q ss_pred CceeecCCCcccccc-eEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCc-EEEcCCCCCCCcceeEEEE--CCEEEE
Q 040145 184 NRWTVMNKMITARSF-FASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGN-WRTIASMGTNMASYDAAVL--DGKLLV 258 (402)
Q Consensus 184 ~~W~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~~~~~~~~~~--~g~ly~ 258 (402)
+.+..+..+...... .+++.. ++++++.|+. -..+.+||..+.. +..+..+.........+.. ++.+++
T Consensus 93 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~------D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 166 (345)
T 3fm0_A 93 DDFECVTTLEGHENEVKSVAWAPSGNLLATCSR------DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLA 166 (345)
T ss_dssp C-EEEEEEECCCSSCEEEEEECTTSSEEEEEET------TSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEE
T ss_pred CCeEEEEEccCCCCCceEEEEeCCCCEEEEEEC------CCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEE
Confidence 766544333222111 223332 4667777765 3457888876543 3322222222222222333 566777
Q ss_pred EcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeC
Q 040145 259 TEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDP 320 (402)
Q Consensus 259 ~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~ 320 (402)
.|+.+ ..+..||..++.|..+.........-..+.+ +++.++.|+.+ ..+.+||.
T Consensus 167 s~s~d------~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D-~~v~iW~~ 223 (345)
T 3fm0_A 167 SASYD------DTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDD-RTVRIWRQ 223 (345)
T ss_dssp EEETT------SCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETT-SCEEEEEE
T ss_pred EEeCC------CcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCC-CeEEEecc
Confidence 77653 3688899888877654331111111112333 57777777653 45666653
No 78
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=97.16 E-value=0.12 Score=46.09 Aligned_cols=222 Identities=14% Similarity=0.107 Sum_probs=116.8
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCC--ceeecCCCc----
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKN--RWTVMNKMI---- 193 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~--~W~~~~~~~---- 193 (402)
.++++|+.+.+........ .. ..-..+++..++.||+.... ...+.+||+..+ .-..+....
T Consensus 70 ~i~~~d~~~g~~~~~~~~~----~~-~~p~gia~d~~g~l~v~d~~-------~~~v~~~~~~g~~~~~~~~~~~~~~g~ 137 (329)
T 3fvz_A 70 TILVIDPNNAEILQSSGKN----LF-YLPHGLSIDTDGNYWVTDVA-------LHQVFKLDPHSKEGPLLILGRSMQPGS 137 (329)
T ss_dssp CEEEECTTTCCEEEEECTT----TC-SSEEEEEECTTSCEEEEETT-------TTEEEEECTTCSSCCSEEESBTTBCCC
T ss_pred cEEEEECCCCeEEeccCCC----cc-CCceEEEECCCCCEEEEECC-------CCEEEEEeCCCCeEEEEEecccCCCCC
Confidence 5888999877654322111 00 11233444357789988653 347999998765 222222110
Q ss_pred --cc-ccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCC-------CCCCcceeEEEE--C-CEEEE
Q 040145 194 --TA-RSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASM-------GTNMASYDAAVL--D-GKLLV 258 (402)
Q Consensus 194 --~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-------~~~~~~~~~~~~--~-g~ly~ 258 (402)
.. .....+++. ++.||+..+.. ...+.+||+....-..+... +........+.+ + +.||+
T Consensus 138 ~~~~~~~P~~ia~~~~~g~lyv~d~~~-----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v 212 (329)
T 3fvz_A 138 DQNHFCQPTDVAVEPSTGAVFVSDGYC-----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCV 212 (329)
T ss_dssp STTCCSSEEEEEECTTTCCEEEEECSS-----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEE
T ss_pred CccccCCCcEEEEeCCCCeEEEEeCCC-----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEE
Confidence 11 122344444 57999997521 46789999654433333211 111122333333 4 89999
Q ss_pred EcccccCCccCCcEEEEeCCCCCeeec-cccccCCCceeEEEECCEEEEEecc------CCcEEEEEeCCCCceeecCCC
Q 040145 259 TEGWLWPFFVSPRGQVYDPSTDNWESM-AVGLREGWTGSSVVVYEHLFVVSEL------ERMKLKVYDPSTDSWETIEGP 331 (402)
Q Consensus 259 ~gG~~~~~~~~~~~~~yd~~~~~W~~~-~~~~~~~~~~~~~~~~~~l~~~gg~------~~~~~~~yd~~~~~W~~~~~~ 331 (402)
.... ...+.+||+.+++.... ............+...+.+|...|. ....+.++|..+.+....-.
T Consensus 213 ~d~~------~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~- 285 (329)
T 3fvz_A 213 ADRE------NGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFK- 285 (329)
T ss_dssp EETT------TTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEEC-
T ss_pred EECC------CCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEc-
Confidence 8654 24799999987765432 2111111111122333555555443 24579999988776554421
Q ss_pred CCCccccCCeEEEE-eCCEEEEEecCceeeeEEEEeccc
Q 040145 332 PLPEQICKPFAVNA-CDCRVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 332 ~~p~~~~~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~ 369 (402)
+.+.......++++ .+|.|||....++. |..+++
T Consensus 286 ~~~~~~~~p~~ia~~~dG~lyvad~~~~~----I~~~~~ 320 (329)
T 3fvz_A 286 PVRKHFDMPHDIVASEDGTVYIGDAHTNT----VWKFTL 320 (329)
T ss_dssp CSSSCCSSEEEEEECTTSEEEEEESSSCC----EEEEEE
T ss_pred CCCCccCCeeEEEECCCCCEEEEECCCCE----EEEEeC
Confidence 11222233445554 46789998876553 666654
No 79
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.14 E-value=0.081 Score=53.57 Aligned_cols=204 Identities=8% Similarity=0.045 Sum_probs=111.7
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCc---c-c
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMI---T-A 195 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~---~-~ 195 (402)
-+++||+.++++..+....... ....+.....++.|++-.. ..+++||+.+++|+...... . .
T Consensus 428 Gl~~~~~~~~~~~~~~~~~~~~----~~v~~i~~d~~g~lwigt~---------~Gl~~~~~~~~~~~~~~~~~~~~~~~ 494 (781)
T 3v9f_A 428 NISYYNTRLKKFQIIELEKNEL----LDVRVFYEDKNKKIWIGTH---------AGVFVIDLASKKVIHHYDTSNSQLLE 494 (781)
T ss_dssp EEEEECSSSCEEEECCSTTTCC----CCEEEEEECTTSEEEEEET---------TEEEEEESSSSSCCEEECTTTSSCSC
T ss_pred CEEEEcCCCCcEEEeccCCCCC----CeEEEEEECCCCCEEEEEC---------CceEEEeCCCCeEEecccCccccccc
Confidence 3678888888887765321010 2223333334678887532 26999999999887654322 1 1
Q ss_pred ccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCC-CCcceeEEEE--CCEEEEEcccccCCccCCc
Q 040145 196 RSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGT-NMASYDAAVL--DGKLLVTEGWLWPFFVSPR 271 (402)
Q Consensus 196 r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~-~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~ 271 (402)
....++.. .++.|++... ...+.+||+.+++++....... +.....+... +|.|++... ..
T Consensus 495 ~~i~~i~~d~~g~lWigt~-------~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~--------~G 559 (781)
T 3v9f_A 495 NFVRSIAQDSEGRFWIGTF-------GGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG--------EG 559 (781)
T ss_dssp SCEEEEEECTTCCEEEEES-------SSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET--------TE
T ss_pred ceeEEEEEcCCCCEEEEEc-------CCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC--------CC
Confidence 11112222 2567776532 1357899999998887643111 1111222222 577777432 24
Q ss_pred E-EEEeCCCCCeeeccc--cccCCCceeEEE-ECCEEEEEeccCCcEEEEEeCCCCceeecCCC-CCCccccCCeEEEE-
Q 040145 272 G-QVYDPSTDNWESMAV--GLREGWTGSSVV-VYEHLFVVSELERMKLKVYDPSTDSWETIEGP-PLPEQICKPFAVNA- 345 (402)
Q Consensus 272 ~-~~yd~~~~~W~~~~~--~~~~~~~~~~~~-~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~-~~p~~~~~~~~~~~- 345 (402)
+ .+||+.++++..... .++.......+. -+|.|++.+. ..+.+||+++.++...... .++...-...+++.
T Consensus 560 lv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~---~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~ 636 (781)
T 3v9f_A 560 LVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWASTN---TGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKD 636 (781)
T ss_dssp EEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEECS---SCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEEC
T ss_pred ceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEcC---CceEEEECCCCceEEecccCCccccccccCceEEC
Confidence 6 899999988876543 233333322222 3678887543 3589999999887765421 23321111123333
Q ss_pred eCCEEEEEe
Q 040145 346 CDCRVYVVG 354 (402)
Q Consensus 346 ~~~~i~v~G 354 (402)
.+|+||+-|
T Consensus 637 ~~G~l~~g~ 645 (781)
T 3v9f_A 637 HNGLIYFGS 645 (781)
T ss_dssp TTSCEEEEE
T ss_pred CCCEEEEEC
Confidence 367776644
No 80
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=97.13 E-value=0.029 Score=50.90 Aligned_cols=207 Identities=9% Similarity=-0.032 Sum_probs=98.4
Q ss_pred EEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccccc-ce
Q 040145 121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARS-FF 199 (402)
Q Consensus 121 ~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~-~~ 199 (402)
+.+||..+++-.......... ......++++..++..++.|+.+ ..+.+||..+++-... +..... ..
T Consensus 117 v~lWd~~~~~~~~~~~~~~~~--h~~~V~~v~~spdg~~l~sgs~d-------g~v~iwd~~~~~~~~~--~~~h~~~v~ 185 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAKYE--HDDIVKTLSVFSDGTQAVSGGKD-------FSVKVWDLSQKAVLKS--YNAHSSEVN 185 (357)
T ss_dssp EEEC--------CCCCEEECC--CSSCEEEEEECSSSSEEEEEETT-------SCEEEEETTTTEEEEE--ECCCSSCEE
T ss_pred EEEeeccccceeEEEeeccCC--CCCCEEEEEECCCCCEEEEEeCC-------CeEEEEECCCCcEEEE--EcCCCCCEE
Confidence 667777665432221111000 00123344554567777887763 2688999988753321 111111 12
Q ss_pred EEEEE-C-CEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE---CCEEEEEcccccCCccCCcEEE
Q 040145 200 ASGVI-G-GMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL---DGKLLVTEGWLWPFFVSPRGQV 274 (402)
Q Consensus 200 ~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~ 274 (402)
+++.. + +.+++.++. -..+.+||..+.+-..............++.+ ++.+++.|+.+ ..+..
T Consensus 186 ~v~~s~~~~~~~~s~~~------dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d------~~i~~ 253 (357)
T 4g56_B 186 CVAACPGKDTIFLSCGE------DGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDET------GNVSL 253 (357)
T ss_dssp EEEECTTCSSCEEEEET------TSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESS------SCEEE
T ss_pred EEEEccCCCceeeeecc------CCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecc------cceeE
Confidence 22332 2 346666665 34578899887653222222222222233333 35677777643 36889
Q ss_pred EeCCCCCeeeccccccCCCce-eEEEE--CC-EEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE--eCC
Q 040145 275 YDPSTDNWESMAVGLREGWTG-SSVVV--YE-HLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA--CDC 348 (402)
Q Consensus 275 yd~~~~~W~~~~~~~~~~~~~-~~~~~--~~-~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~--~~~ 348 (402)
||+.+.+- +.. ....... ..+.+ ++ ++++.|+. ...+.+||..+.+-.... ... ..-.+++. .++
T Consensus 254 wd~~~~~~--~~~-~~~~~~~v~~l~~sp~~~~~lasgs~-D~~i~iwd~~~~~~~~~~----~H~-~~V~~vafsP~d~ 324 (357)
T 4g56_B 254 VNIKNPDS--AQT-SAVHSQNITGLAYSYHSSPFLASISE-DCTVAVLDADFSEVFRDL----SHR-DFVTGVAWSPLDH 324 (357)
T ss_dssp EESSCGGG--CEE-ECCCSSCEEEEEECSSSSCCEEEEET-TSCEEEECTTSCEEEEEC----CCS-SCEEEEEECSSST
T ss_pred EECCCCcE--eEE-EeccceeEEEEEEcCCCCCEEEEEeC-CCEEEEEECCCCcEeEEC----CCC-CCEEEEEEeCCCC
Confidence 99876542 111 1111111 12233 44 45555554 457999999877544332 111 11223333 367
Q ss_pred EEEEEecCcee
Q 040145 349 RVYVVGRNLHV 359 (402)
Q Consensus 349 ~i~v~GG~~~~ 359 (402)
++++.||.++.
T Consensus 325 ~~l~s~s~Dg~ 335 (357)
T 4g56_B 325 SKFTTVGWDHK 335 (357)
T ss_dssp TEEEEEETTSC
T ss_pred CEEEEEcCCCe
Confidence 88888887655
No 81
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=97.10 E-value=0.047 Score=49.71 Aligned_cols=213 Identities=12% Similarity=-0.008 Sum_probs=101.6
Q ss_pred eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEE
Q 040145 149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVL 227 (402)
Q Consensus 149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~y 227 (402)
.++++..+|++.++++... -..+.+||+.+.+-..... ....-..++.. ++++++.++ ...+.++
T Consensus 137 ~~v~fSpDg~~la~as~~~-----d~~i~iwd~~~~~~~~~~~--~~~~V~~v~fspdg~~l~s~s-------~~~~~~~ 202 (365)
T 4h5i_A 137 KLVYISREGTVAAIASSKV-----PAIMRIIDPSDLTEKFEIE--TRGEVKDLHFSTDGKVVAYIT-------GSSLEVI 202 (365)
T ss_dssp EEEEECTTSSCEEEEESCS-----SCEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSSEEEEEC-------SSCEEEE
T ss_pred EEEEEcCCCCEEEEEECCC-----CCEEEEeECCCCcEEEEeC--CCCceEEEEEccCCceEEecc-------ceeEEEE
Confidence 4555655676655443211 2378999999886543221 11112233333 556666654 2346777
Q ss_pred cCCCCcEEEcCCCCCCCcceeEE--EECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccc-cccCCCcee-EEE--EC
Q 040145 228 DPVKGNWRTIASMGTNMASYDAA--VLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV-GLREGWTGS-SVV--VY 301 (402)
Q Consensus 228 d~~t~~W~~~~~~~~~~~~~~~~--~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~-~~~--~~ 301 (402)
+..++.-...............+ .-++..++.++..+... ..+..+|........... ......... ++. -+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spd 280 (365)
T 4h5i_A 203 STVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKG--IVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMK 280 (365)
T ss_dssp ETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCC--EEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTT
T ss_pred EeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcce--eEEeecccccceecceeeeeecCCCCCeEeEEECCC
Confidence 77776543322222222222222 33788888776543211 145667766555443321 111111111 222 27
Q ss_pred CEEEEEeccCCcEEEEEeCCCCceee-cCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEecccccccCceeeeE
Q 040145 302 EHLFVVSELERMKLKVYDPSTDSWET-IEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQW 380 (402)
Q Consensus 302 ~~l~~~gg~~~~~~~~yd~~~~~W~~-~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W 380 (402)
|++++.|+. ...|.+||..+.+-.. +. -.........+...++++++.|+.++. |-++|.-++.-.....|
T Consensus 281 g~~lasgs~-D~~V~iwd~~~~~~~~~~~---~gH~~~V~~v~fSpdg~~laS~S~D~t----vrvw~ip~~~~~~~s~~ 352 (365)
T 4h5i_A 281 GELAVLASN-DNSIALVKLKDLSMSKIFK---QAHSFAITEVTISPDSTYVASVSAANT----IHIIKLPLNYANYTSMK 352 (365)
T ss_dssp SCEEEEEET-TSCEEEEETTTTEEEEEET---TSSSSCEEEEEECTTSCEEEEEETTSE----EEEEECCTTTTC-----
T ss_pred CCceEEEcC-CCEEEEEECCCCcEEEEec---CcccCCEEEEEECCCCCEEEEEeCCCe----EEEEEcCCCCcCccCcc
Confidence 888888776 4579999998764222 11 111101111222458888888887665 44444334444556666
Q ss_pred EEEeC
Q 040145 381 QVVDA 385 (402)
Q Consensus 381 ~~~~~ 385 (402)
+++.-
T Consensus 353 ~~l~k 357 (365)
T 4h5i_A 353 QKISK 357 (365)
T ss_dssp -----
T ss_pred cccee
Confidence 66543
No 82
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.08 E-value=0.075 Score=48.89 Aligned_cols=150 Identities=7% Similarity=0.033 Sum_probs=77.6
Q ss_pred EEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCC
Q 040145 152 SIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPV 230 (402)
Q Consensus 152 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~ 230 (402)
....++.+++.|+.+ ..+.+||..++.-...-. .....-.+++.. ++++++.|+. ...+.+||..
T Consensus 104 ~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~------d~~i~iwd~~ 169 (420)
T 3vl1_A 104 TAKLQMRRFILGTTE-------GDIKVLDSNFNLQREIDQ-AHVSEITKLKFFPSGEALISSSQ------DMQLKIWSVK 169 (420)
T ss_dssp EECSSSCEEEEEETT-------SCEEEECTTSCEEEEETT-SSSSCEEEEEECTTSSEEEEEET------TSEEEEEETT
T ss_pred EEecCCCEEEEEECC-------CCEEEEeCCCcceeeecc-cccCccEEEEECCCCCEEEEEeC------CCeEEEEeCC
Confidence 444577788887752 268999988775433211 111112233332 4566666665 4568899988
Q ss_pred CCcEEEcCCCCCCCcceeEE-EE-CCEEEEEcccccCCccCCcEEEEeCCCCCeee-ccccc-cCCCceeEE--------
Q 040145 231 KGNWRTIASMGTNMASYDAA-VL-DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES-MAVGL-REGWTGSSV-------- 298 (402)
Q Consensus 231 t~~W~~~~~~~~~~~~~~~~-~~-~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~-~~~~~-~~~~~~~~~-------- 298 (402)
+..-. ..+.........+ .. ++..++.|+.+ ..+..||+.+++-.. +.... +.......+
T Consensus 170 ~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 241 (420)
T 3vl1_A 170 DGSNP--RTLIGHRATVTDIAIIDRGRNVLSASLD------GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ 241 (420)
T ss_dssp TCCCC--EEEECCSSCEEEEEEETTTTEEEEEETT------SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS
T ss_pred CCcCc--eEEcCCCCcEEEEEEcCCCCEEEEEcCC------CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce
Confidence 65421 1111111112222 22 66666666653 368889988764221 11100 000000011
Q ss_pred --------------EECCEEEEEeccCCcEEEEEeCCCCc
Q 040145 299 --------------VVYEHLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 299 --------------~~~~~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
.-++++++.|+. ...+.+||..+..
T Consensus 242 ~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~ 280 (420)
T 3vl1_A 242 LHEISTSKKNNLEFGTYGKYVIAGHV-SGVITVHNVFSKE 280 (420)
T ss_dssp CGGGCCCCCCTTCSSCTTEEEEEEET-TSCEEEEETTTCC
T ss_pred eeecccCcccceEEcCCCCEEEEEcC-CCeEEEEECCCCc
Confidence 125667777665 5579999998764
No 83
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=97.08 E-value=0.12 Score=45.93 Aligned_cols=240 Identities=12% Similarity=0.043 Sum_probs=120.3
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK 183 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t 183 (402)
++.+|+.+. ....+++||+.+++...+.... . ......++..++.+|+...... .....+++||+.+
T Consensus 55 ~g~l~~~~~----~~~~i~~~d~~~~~~~~~~~~~--~----~~~~~i~~~~dg~l~v~~~~~~---~~~~~i~~~d~~~ 121 (333)
T 2dg1_A 55 QGQLFLLDV----FEGNIFKINPETKEIKRPFVSH--K----ANPAAIKIHKDGRLFVCYLGDF---KSTGGIFAATENG 121 (333)
T ss_dssp TSCEEEEET----TTCEEEEECTTTCCEEEEEECS--S----SSEEEEEECTTSCEEEEECTTS---SSCCEEEEECTTS
T ss_pred CCCEEEEEC----CCCEEEEEeCCCCcEEEEeeCC--C----CCcceEEECCCCcEEEEeCCCC---CCCceEEEEeCCC
Confidence 556777653 2235889999888776543111 0 1223444445778888754321 1124799999998
Q ss_pred Cceee-cCCCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CC-EEEE
Q 040145 184 NRWTV-MNKMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DG-KLLV 258 (402)
Q Consensus 184 ~~W~~-~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g-~ly~ 258 (402)
+..+. +...........++. -++++|+.............+++||+.+++...+..- ........+ +| .||+
T Consensus 122 ~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~i~~~~dg~~l~v 198 (333)
T 2dg1_A 122 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN---ISVANGIALSTDEKVLWV 198 (333)
T ss_dssp CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE---ESSEEEEEECTTSSEEEE
T ss_pred CEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC---CCcccceEECCCCCEEEE
Confidence 87653 222211122222233 2567887654221111145789999987766554210 111222223 55 4777
Q ss_pred EcccccCCccCCcEEEEeCCCC--Ceeeccc----cccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCC
Q 040145 259 TEGWLWPFFVSPRGQVYDPSTD--NWESMAV----GLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEG 330 (402)
Q Consensus 259 ~gG~~~~~~~~~~~~~yd~~~~--~W~~~~~----~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~ 330 (402)
.... ...+++||+.++ ....+.. ..........+.+ +|++|+.... ...+.+||++...-..+.
T Consensus 199 ~~~~------~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~-~~~v~~~d~~g~~~~~~~- 270 (333)
T 2dg1_A 199 TETT------ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG-QGRVLVFNKRGYPIGQIL- 270 (333)
T ss_dssp EEGG------GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET-TTEEEEECTTSCEEEEEE-
T ss_pred EeCC------CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC-CCEEEEECCCCCEEEEEE-
Confidence 6432 236889998542 3332210 0111111112233 6788876532 457999999655444443
Q ss_pred CCCCccc----cCCeEEEE-eC-CEEEEEecCce-eeeEEEEeccc
Q 040145 331 PPLPEQI----CKPFAVNA-CD-CRVYVVGRNLH-VAVGHITRLST 369 (402)
Q Consensus 331 ~~~p~~~----~~~~~~~~-~~-~~i~v~GG~~~-~~~~~v~~~~~ 369 (402)
.+... ....+++. .+ +.||+.+.... ...+.++.++.
T Consensus 271 --~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~ 314 (333)
T 2dg1_A 271 --IPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG 314 (333)
T ss_dssp --CTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred --cCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEec
Confidence 22110 01223333 34 47877654322 22355777664
No 84
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=97.08 E-value=0.014 Score=53.13 Aligned_cols=225 Identities=11% Similarity=0.055 Sum_probs=104.9
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK 183 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t 183 (402)
++.+++.++.+ ..+.+||..+..|..+..+.... ....++.+..++.+++.|+.+ ..+.+||..+
T Consensus 22 ~g~~l~~~~~d----~~i~iw~~~~~~~~~~~~~~~h~----~~v~~~~~s~~~~~l~s~s~d-------~~v~vwd~~~ 86 (377)
T 3dwl_C 22 QRTEFVTTTAT----NQVELYEQDGNGWKHARTFSDHD----KIVTCVDWAPKSNRIVTCSQD-------RNAYVYEKRP 86 (377)
T ss_dssp SSSEEECCCSS----SCBCEEEEETTEEEECCCBCCCS----SCEEEEEECTTTCCEEEEETT-------SSEEEC----
T ss_pred CCCEEEEecCC----CEEEEEEccCCceEEEEEEecCC----ceEEEEEEeCCCCEEEEEeCC-------CeEEEEEcCC
Confidence 34455555332 23678888888777766554221 233445554567777777752 2689999988
Q ss_pred Cc-eeecCCCcccccc-eEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCc-EEEcCCCCC-CCcceeEEEE--CCEE
Q 040145 184 NR-WTVMNKMITARSF-FASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGN-WRTIASMGT-NMASYDAAVL--DGKL 256 (402)
Q Consensus 184 ~~-W~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~-~~~~~~~~~~--~g~l 256 (402)
+. |.....+...... ..+... +++.++.|+. ...+.+||..+.. |.....+.. .......+.+ ++++
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 160 (377)
T 3dwl_C 87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSG------ARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL 160 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEECCTTSSCCEEEES------SSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred CCceeeeeEecccCCceEEEEECCCCCEEEEEec------CCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence 76 5443322222112 222222 4566666665 3457888888764 333322322 1122222333 6677
Q ss_pred EEEcccccCCccCCcEEEEeCCCCCeeecc---------------ccccCCCceeEEEE--CCEEEEEeccCCcEEEEEe
Q 040145 257 LVTEGWLWPFFVSPRGQVYDPSTDNWESMA---------------VGLREGWTGSSVVV--YEHLFVVSELERMKLKVYD 319 (402)
Q Consensus 257 y~~gG~~~~~~~~~~~~~yd~~~~~W~~~~---------------~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd 319 (402)
++.|+.+ ..+..||+.+....... ........-..+.+ ++++++.|+. ...+.+||
T Consensus 161 l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~i~iwd 233 (377)
T 3dwl_C 161 LAAGCAD------RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGH-DSSVTIAY 233 (377)
T ss_dssp EEEEESS------SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEET-TTEEC-CE
T ss_pred EEEEeCC------CEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeC-CCcEEEEE
Confidence 7777653 36788887544322111 00111111112233 6676666665 45788888
Q ss_pred CCCCce--eecCCCCCCccccCCeE-EEEeCCEEEEEecCce
Q 040145 320 PSTDSW--ETIEGPPLPEQICKPFA-VNACDCRVYVVGRNLH 358 (402)
Q Consensus 320 ~~~~~W--~~~~~~~~p~~~~~~~~-~~~~~~~i~v~GG~~~ 358 (402)
..+.+- ..+. .+........+ ....++++++.|+.+.
T Consensus 234 ~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 273 (377)
T 3dwl_C 234 PSAPEQPPRALI--TVKLSQLPLRSLLWANESAIVAAGYNYS 273 (377)
T ss_dssp ECSTTSCEEECC--CEECSSSCEEEEEEEETTEEEEEESSSS
T ss_pred CCCCCCcceeeE--eecCCCCceEEEEEcCCCCEEEEEcCCc
Confidence 876542 1122 11111011122 2345788777776433
No 85
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=97.06 E-value=0.12 Score=45.20 Aligned_cols=186 Identities=10% Similarity=0.085 Sum_probs=87.6
Q ss_pred CEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce-EEEEEC---CEEEEEcCCCCCCCCCCeeEEEcCCCC
Q 040145 157 GTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF-ASGVIG---GMIYVAGGSSADLFELDSAEVLDPVKG 232 (402)
Q Consensus 157 ~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~-~~~~~~---~~iyv~GG~~~~~~~~~~~~~yd~~t~ 232 (402)
+.+++.|+.+ ..+.+||..++.|..+..+....... +++... +.+++.|+. -..+.+||..+.
T Consensus 67 g~~l~s~s~D-------~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~------d~~v~~wd~~~~ 133 (297)
T 2pm7_B 67 GTILASCSYD-------GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS------DGKVSVVEFKEN 133 (297)
T ss_dssp CSEEEEEETT-------TEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET------TSEEEEEEBCSS
T ss_pred CCEEEEEcCC-------CEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEEC------CCcEEEEEecCC
Confidence 5677777763 27899999988776543322111112 222222 456666665 345777877654
Q ss_pred c-EEEcCCCCCCCcceeEEEE---------------CCEEEEEcccccCCccCCcEEEEeCCCCC--eeeccccccCCCc
Q 040145 233 N-WRTIASMGTNMASYDAAVL---------------DGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WESMAVGLREGWT 294 (402)
Q Consensus 233 ~-W~~~~~~~~~~~~~~~~~~---------------~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~ 294 (402)
. +... .+.........+.. ++++++.|+.+ ..+..||..++. |..+.. +.....
T Consensus 134 ~~~~~~-~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D------~~v~lwd~~~~~~~~~~~~~-l~~H~~ 205 (297)
T 2pm7_B 134 GTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD------NLVKIWKYNSDAQTYVLEST-LEGHSD 205 (297)
T ss_dssp SCBCCE-EEECCSSCEEEEEECCCC------------CCEEEEEETT------SCEEEEEEETTTTEEEEEEE-ECCCSS
T ss_pred Cceeee-eeecccCccceEeecCCcccccccCCCCCCcceEEEEcCC------CcEEEEEEcCCCceEEEEEE-ecCCCC
Confidence 2 2100 00000001111111 24567777653 357778876543 443322 111111
Q ss_pred e-eEEEE--C---CEEEEEeccCCcEEEEEeCCC--CceeecCCCCCCccccCCeEEE-EeCCEEEEEecCceeeeEEEE
Q 040145 295 G-SSVVV--Y---EHLFVVSELERMKLKVYDPST--DSWETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLHVAVGHIT 365 (402)
Q Consensus 295 ~-~~~~~--~---~~l~~~gg~~~~~~~~yd~~~--~~W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~~~~~v~ 365 (402)
. ..+.+ + +.+++.|+. ...+.+||..+ ..|..... ..........++. ..++++++.||.++. ..+|
T Consensus 206 ~V~~v~~sp~~~~~~~las~s~-D~~v~iWd~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~g~~las~~~D~~--v~lw 281 (297)
T 2pm7_B 206 WVRDVAWSPTVLLRSYMASVSQ-DRTCIIWTQDNEQGPWKKTLL-KEEKFPDVLWRASWSLSGNVLALSGGDNK--VTLW 281 (297)
T ss_dssp CEEEEEECCCCSSSEEEEEEET-TSCEEEEEESSTTSCCEEEES-SSSCCSSCEEEEEECSSSCCEEEEETTSC--EEEE
T ss_pred ceEEEEECCCCCCceEEEEEEC-CCcEEEEEeCCCCCccceeee-ecccCCCcEEEEEECCCCCEEEEEcCCCc--EEEE
Confidence 1 12333 2 366666665 44677777755 34543210 0011001112222 357788888876654 2344
Q ss_pred ec
Q 040145 366 RL 367 (402)
Q Consensus 366 ~~ 367 (402)
..
T Consensus 282 ~~ 283 (297)
T 2pm7_B 282 KE 283 (297)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 86
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.04 E-value=0.19 Score=46.10 Aligned_cols=219 Identities=9% Similarity=-0.017 Sum_probs=108.9
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK 183 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t 183 (402)
++.+++.++.+. .+.+||..+..-...-... .....++....++.+++.|+.+ ..+.+||..+
T Consensus 108 ~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~h------~~~v~~~~~~~~~~~l~s~s~d-------~~i~iwd~~~ 170 (420)
T 3vl1_A 108 QMRRFILGTTEG----DIKVLDSNFNLQREIDQAH------VSEITKLKFFPSGEALISSSQD-------MQLKIWSVKD 170 (420)
T ss_dssp SSCEEEEEETTS----CEEEECTTSCEEEEETTSS------SSCEEEEEECTTSSEEEEEETT-------SEEEEEETTT
T ss_pred CCCEEEEEECCC----CEEEEeCCCcceeeecccc------cCccEEEEECCCCCEEEEEeCC-------CeEEEEeCCC
Confidence 344555554332 3778888766544331111 1223444444466677777652 2799999987
Q ss_pred CceeecCCCccc-ccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEE-cCCCCCCCcceeEE----------
Q 040145 184 NRWTVMNKMITA-RSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRT-IASMGTNMASYDAA---------- 250 (402)
Q Consensus 184 ~~W~~~~~~~~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~~~~~---------- 250 (402)
++-.. .+... ..-.+++.. ++..++.|+. -..+.+||..+++-.. +.............
T Consensus 171 ~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 242 (420)
T 3vl1_A 171 GSNPR--TLIGHRATVTDIAIIDRGRNVLSASL------DGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL 242 (420)
T ss_dssp CCCCE--EEECCSSCEEEEEEETTTTEEEEEET------TSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSC
T ss_pred CcCce--EEcCCCCcEEEEEEcCCCCEEEEEcC------CCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCccee
Confidence 64211 11111 111233333 4555666665 3458889988775322 21111111111111
Q ss_pred -------------EECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CCE-EEEEeccCCcE
Q 040145 251 -------------VLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEH-LFVVSELERMK 314 (402)
Q Consensus 251 -------------~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~-l~~~gg~~~~~ 314 (402)
.-++++++.|+.+ ..+..||+.+.+-...-. ......-..+.+ ++. +++.|+. ...
T Consensus 243 ~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~g~~-dg~ 314 (420)
T 3vl1_A 243 HEISTSKKNNLEFGTYGKYVIAGHVS------GVITVHNVFSKEQTIQLP-SKFTCSCNSLTVDGNNANYIYAGYE-NGM 314 (420)
T ss_dssp GGGCCCCCCTTCSSCTTEEEEEEETT------SCEEEEETTTCCEEEEEC-CTTSSCEEEEEECSSCTTEEEEEET-TSE
T ss_pred eecccCcccceEEcCCCCEEEEEcCC------CeEEEEECCCCceeEEcc-cccCCCceeEEEeCCCCCEEEEEeC-CCe
Confidence 1256777776643 368999998765221111 111111112233 444 6666665 568
Q ss_pred EEEEeCCCCce--eecCCCCCCccccCCeEEEEeCCEEEEEecCcee
Q 040145 315 LKVYDPSTDSW--ETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHV 359 (402)
Q Consensus 315 ~~~yd~~~~~W--~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~ 359 (402)
+.+||..+..- ..+. ... .....++...++++++.|+.+..
T Consensus 315 i~vwd~~~~~~~~~~~~---~~~-~~~v~~~~~~~~~~l~s~~~d~~ 357 (420)
T 3vl1_A 315 LAQWDLRSPECPVGEFL---INE-GTPINNVYFAAGALFVSSGFDTS 357 (420)
T ss_dssp EEEEETTCTTSCSEEEE---EST-TSCEEEEEEETTEEEEEETTTEE
T ss_pred EEEEEcCCCcCchhhhh---ccC-CCCceEEEeCCCCEEEEecCCcc
Confidence 99999987532 2221 000 01223445568888888886644
No 87
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=97.03 E-value=0.14 Score=44.61 Aligned_cols=224 Identities=11% Similarity=0.070 Sum_probs=116.4
Q ss_pred CeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCC
Q 040145 105 PWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKN 184 (402)
Q Consensus 105 ~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~ 184 (402)
..+|+.+.. ...++.||+.+. ...+.... ..-...++..++.+|+.... ...+.+||+.++
T Consensus 40 ~~l~~~~~~----~~~i~~~~~~~~-~~~~~~~~-------~~~~~l~~~~dg~l~v~~~~-------~~~i~~~d~~~g 100 (296)
T 3e5z_A 40 SAVIFSDVR----QNRTWAWSDDGQ-LSPEMHPS-------HHQNGHCLNKQGHLIACSHG-------LRRLERQREPGG 100 (296)
T ss_dssp TEEEEEEGG----GTEEEEEETTSC-EEEEESSC-------SSEEEEEECTTCCEEEEETT-------TTEEEEECSTTC
T ss_pred CEEEEEeCC----CCEEEEEECCCC-eEEEECCC-------CCcceeeECCCCcEEEEecC-------CCeEEEEcCCCC
Confidence 346666532 235889999887 55443211 11233444457788876532 237999999998
Q ss_pred ceeecCCCcc----cccceEEEEECCEEEEE----cCCC-------CCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeE
Q 040145 185 RWTVMNKMIT----ARSFFASGVIGGMIYVA----GGSS-------ADLFELDSAEVLDPVKGNWRTIASMGTNMASYDA 249 (402)
Q Consensus 185 ~W~~~~~~~~----~r~~~~~~~~~~~iyv~----GG~~-------~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~ 249 (402)
+.+.+..... .+....+..-++++|+. |... ........++.||+. ++.+.+... ......
T Consensus 101 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~---~~~~~g 176 (296)
T 3e5z_A 101 EWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRD---RVKPNG 176 (296)
T ss_dssp CEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECC---CSSEEE
T ss_pred cEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecC---CCCCcc
Confidence 8766532211 11112222236788886 4311 011113478999987 555443211 111222
Q ss_pred EEE--CCEEEEEcccccCCccCCcEEEEeCC-CCCe-eeccc-cccCCC-ceeEEEECCEEEEEeccCCcEEEEEeCCCC
Q 040145 250 AVL--DGKLLVTEGWLWPFFVSPRGQVYDPS-TDNW-ESMAV-GLREGW-TGSSVVVYEHLFVVSELERMKLKVYDPSTD 323 (402)
Q Consensus 250 ~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~-~~~W-~~~~~-~~~~~~-~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~ 323 (402)
..+ +|++++.... ...+++||+. +++. ..... ...... .+.+.--+|+||+.. ...+.+||++..
T Consensus 177 i~~s~dg~~lv~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~---~~~v~~~~~~g~ 247 (296)
T 3e5z_A 177 LAFLPSGNLLVSDTG------DNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA---GDGVHVLTPDGD 247 (296)
T ss_dssp EEECTTSCEEEEETT------TTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE---TTEEEEECTTSC
T ss_pred EEECCCCCEEEEeCC------CCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc---CCeEEEECCCCC
Confidence 333 6776644332 2478899986 5555 21111 011111 122233478888876 457999999866
Q ss_pred ceeecCCCCCCccccCCeEEEE--eCC-EEEEEecCceeeeEEEEecccccc
Q 040145 324 SWETIEGPPLPEQICKPFAVNA--CDC-RVYVVGRNLHVAVGHITRLSTSEK 372 (402)
Q Consensus 324 ~W~~~~~~~~p~~~~~~~~~~~--~~~-~i~v~GG~~~~~~~~v~~~~~~~~ 372 (402)
....+. .+.. ..+++. .++ .|||.+.. .++.+++..+
T Consensus 248 ~~~~~~---~~~~---~~~~~f~~~d~~~L~v~t~~------~l~~~~~~~~ 287 (296)
T 3e5z_A 248 ELGRVL---TPQT---TSNLCFGGPEGRTLYMTVST------EFWSIETNVR 287 (296)
T ss_dssp EEEEEE---CSSC---CCEEEEESTTSCEEEEEETT------EEEEEECSCC
T ss_pred EEEEEE---CCCC---ceeEEEECCCCCEEEEEcCC------eEEEEEcccc
Confidence 555543 3321 223333 233 57776542 4778876544
No 88
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=97.03 E-value=0.065 Score=47.53 Aligned_cols=195 Identities=6% Similarity=-0.083 Sum_probs=93.5
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcE-EeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCW-HTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQ 182 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W-~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~ 182 (402)
+..+|+.... ...++.+|+.+.+. ......... ...+.+....+..|| .+... .....+.+||..
T Consensus 51 g~~l~~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~-~~~~~----~~~~~i~v~d~~ 116 (331)
T 3u4y_A 51 CSNVVVTSDF----CQTLVQIETQLEPPKVVAIQEGQS-----SMADVDITPDDQFAV-TVTGL----NHPFNMQSYSFL 116 (331)
T ss_dssp SCEEEEEEST----TCEEEEEECSSSSCEEEEEEECSS-----CCCCEEECTTSSEEE-ECCCS----SSSCEEEEEETT
T ss_pred CCEEEEEeCC----CCeEEEEECCCCceeEEecccCCC-----CccceEECCCCCEEE-EecCC----CCcccEEEEECC
Confidence 4456766532 23688999988764 221111111 111133332244566 43321 112379999999
Q ss_pred CCceeecCCCcccccceEEEEE-CC-EEEEEcCCCCCCCCCCe-eEEEcCCCCc-EEEc--CCCCCCCcceeEEEE--CC
Q 040145 183 KNRWTVMNKMITARSFFASGVI-GG-MIYVAGGSSADLFELDS-AEVLDPVKGN-WRTI--ASMGTNMASYDAAVL--DG 254 (402)
Q Consensus 183 t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~-~~~yd~~t~~-W~~~--~~~~~~~~~~~~~~~--~g 254 (402)
+++.... ++.....+.++.. ++ .+|+.+.. ... +.+|+...+. -... ..++.. .......+ +|
T Consensus 117 ~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~------~~~~i~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~spdg 187 (331)
T 3u4y_A 117 KNKFIST--IPIPYDAVGIAISPNGNGLILIDRS------SANTVRRFKIDADGVLFDTGQEFISGG-TRPFNITFTPDG 187 (331)
T ss_dssp TTEEEEE--EECCTTEEEEEECTTSSCEEEEEET------TTTEEEEEEECTTCCEEEEEEEEECSS-SSEEEEEECTTS
T ss_pred CCCeEEE--EECCCCccceEECCCCCEEEEEecC------CCceEEEEEECCCCcEeecCCccccCC-CCccceEECCCC
Confidence 8865442 2222222344443 33 57777653 234 6666655322 1110 011111 11222223 56
Q ss_pred E-EEEEcccccCCccCCcEEEEeCCCCCe-eecccc-ccCCCceeEEEECCE-EEEEeccCCcEEEEEeCCCCceeec
Q 040145 255 K-LLVTEGWLWPFFVSPRGQVYDPSTDNW-ESMAVG-LREGWTGSSVVVYEH-LFVVSELERMKLKVYDPSTDSWETI 328 (402)
Q Consensus 255 ~-ly~~gG~~~~~~~~~~~~~yd~~~~~W-~~~~~~-~~~~~~~~~~~~~~~-l~~~gg~~~~~~~~yd~~~~~W~~~ 328 (402)
+ +|+.+.. ...+.+||+.+++. ..+... ....-......-+|+ +|+. ......+.+||+++.+.+.+
T Consensus 188 ~~l~v~~~~------~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~-~~~~~~i~~~d~~~~~~~~~ 258 (331)
T 3u4y_A 188 NFAFVANLI------GNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVL-TESTVDVFNFNQLSGTLSFV 258 (331)
T ss_dssp SEEEEEETT------TTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEE-CSSEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeCC------CCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEE-EcCCCEEEEEECCCCceeee
Confidence 5 7776543 24789999988765 112110 111111122223566 5554 33456799999998876444
No 89
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=97.02 E-value=0.088 Score=46.04 Aligned_cols=189 Identities=10% Similarity=-0.012 Sum_probs=98.4
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcE
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNW 234 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 234 (402)
++.||+++.. ...+++||+.++ .+.... +. ....+++. -++++|+.... ...+.+||+.+++.
T Consensus 39 g~~l~~~~~~-------~~~i~~~~~~~~-~~~~~~-~~-~~~~~l~~~~dg~l~v~~~~------~~~i~~~d~~~g~~ 102 (296)
T 3e5z_A 39 RSAVIFSDVR-------QNRTWAWSDDGQ-LSPEMH-PS-HHQNGHCLNKQGHLIACSHG------LRRLERQREPGGEW 102 (296)
T ss_dssp GTEEEEEEGG-------GTEEEEEETTSC-EEEEES-SC-SSEEEEEECTTCCEEEEETT------TTEEEEECSTTCCE
T ss_pred CCEEEEEeCC-------CCEEEEEECCCC-eEEEEC-CC-CCcceeeECCCCcEEEEecC------CCeEEEEcCCCCcE
Confidence 3458887754 237999999988 554432 11 11223333 25778876542 35789999988887
Q ss_pred EEcCCCCCC----CcceeEEEECCEEEEE----ccccc-------CCccCCcEEEEeCCCCCeeeccccccCCCceeEEE
Q 040145 235 RTIASMGTN----MASYDAAVLDGKLLVT----EGWLW-------PFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVV 299 (402)
Q Consensus 235 ~~~~~~~~~----~~~~~~~~~~g~ly~~----gG~~~-------~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~ 299 (402)
+.+...... +....++.-+|++|+. |.... .......++.||+. ++...+......+ .+.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~-~gi~~s 180 (296)
T 3e5z_A 103 ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKP-NGLAFL 180 (296)
T ss_dssp EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSE-EEEEEC
T ss_pred EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCC-ccEEEC
Confidence 765321111 1111122237889986 33110 00112378899987 5554443211111 111122
Q ss_pred ECCEEEEEeccCCcEEEEEeCC-CCce-eecCCCCCCccccCCeEEE-EeCCEEEEEecCceeeeEEEEeccccc
Q 040145 300 VYEHLFVVSELERMKLKVYDPS-TDSW-ETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLHVAVGHITRLSTSE 371 (402)
Q Consensus 300 ~~~~l~~~gg~~~~~~~~yd~~-~~~W-~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~~~~~v~~~~~~~ 371 (402)
-+++++ +.+.....+++||.. +.+. .......... ....+++ -.+|+|||..+ +.|..|++..
T Consensus 181 ~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~--~~p~~i~~d~~G~l~v~~~------~~v~~~~~~g 246 (296)
T 3e5z_A 181 PSGNLL-VSDTGDNATHRYCLNARGETEYQGVHFTVEP--GKTDGLRVDAGGLIWASAG------DGVHVLTPDG 246 (296)
T ss_dssp TTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEECCSS--SCCCSEEEBTTSCEEEEET------TEEEEECTTS
T ss_pred CCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEeeCCC--CCCCeEEECCCCCEEEEcC------CeEEEECCCC
Confidence 367777 555546789999986 4444 1111000110 1112333 35788888772 2478888743
No 90
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.95 E-value=0.33 Score=49.10 Aligned_cols=219 Identities=11% Similarity=0.060 Sum_probs=113.5
Q ss_pred EEEeecCCCcEEeCCCCCC--CCCCCC-CCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCC---Ccc
Q 040145 121 WQVLDLTHYCWHTIPAMPC--KDKVCP-HGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNK---MIT 194 (402)
Q Consensus 121 ~~~~d~~~~~W~~l~~~~~--~~~~~~-~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~---~~~ 194 (402)
+..|++.+..+......+. ...... ....+.....++.|++-.. ..-+.+||+.+++++.... ++.
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~--------~~Gl~~~~~~~~~~~~~~~~~~~~~ 406 (781)
T 3v9f_A 335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTD--------GGGINVFENGKRVAIYNKENRELLS 406 (781)
T ss_dssp EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEB--------SSCEEEEETTEEEEECC-----CCC
T ss_pred EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeC--------CCcEEEEECCCCeEEEccCCCCCCC
Confidence 6678888777665432110 000001 1123333323467876431 1148899998887766421 111
Q ss_pred cccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCc
Q 040145 195 ARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPR 271 (402)
Q Consensus 195 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~ 271 (402)
..-.++..- ++.|++ |.. ...+.+||+.+++++.............+... +|.|++... ..
T Consensus 407 -~~v~~i~~d~~g~lWi-gt~------~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~--------~G 470 (781)
T 3v9f_A 407 -NSVLCSLKDSEGNLWF-GTY------LGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH--------AG 470 (781)
T ss_dssp -SBEEEEEECTTSCEEE-EET------TEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET--------TE
T ss_pred -cceEEEEECCCCCEEE-Eec------cCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC--------Cc
Confidence 111222222 567776 332 24689999999999877532111112222222 577777432 36
Q ss_pred EEEEeCCCCCeeeccccc----cCCCceeEE-EECCEEEEEeccCCcEEEEEeCCCCceeecCCC-CCCccccCCeEEEE
Q 040145 272 GQVYDPSTDNWESMAVGL----REGWTGSSV-VVYEHLFVVSELERMKLKVYDPSTDSWETIEGP-PLPEQICKPFAVNA 345 (402)
Q Consensus 272 ~~~yd~~~~~W~~~~~~~----~~~~~~~~~-~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~-~~p~~~~~~~~~~~ 345 (402)
+.+||+.+++|....... ........+ --+|.|++.. . ...+.+||+++++++..... .++. ....+++.
T Consensus 471 l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~~Gl~~~~~~~~~~~~~~~~~~l~~--~~i~~i~~ 546 (781)
T 3v9f_A 471 VFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT-F-GGGVGIYTPDMQLVRKFNQYEGFCS--NTINQIYR 546 (781)
T ss_dssp EEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE-S-SSCEEEECTTCCEEEEECTTTTCSC--SCEEEEEE
T ss_pred eEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE-c-CCCEEEEeCCCCeEEEccCCCCCCC--CeeEEEEE
Confidence 899999999887764311 111111111 2267777643 2 23589999999988876521 1221 11123332
Q ss_pred -eCCEEEEEecCceeeeEEEEecccccc
Q 040145 346 -CDCRVYVVGRNLHVAVGHITRLSTSEK 372 (402)
Q Consensus 346 -~~~~i~v~GG~~~~~~~~v~~~~~~~~ 372 (402)
.+|.|++... . +-+..||+..+
T Consensus 547 d~~g~lWi~T~-~----Glv~~~d~~~~ 569 (781)
T 3v9f_A 547 SSKGQMWLATG-E----GLVCFPSARNF 569 (781)
T ss_dssp CTTSCEEEEET-T----EEEEESCTTTC
T ss_pred CCCCCEEEEEC-C----CceEEECCCCC
Confidence 4677877653 1 11377776554
No 91
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=96.95 E-value=0.14 Score=47.38 Aligned_cols=133 Identities=11% Similarity=0.070 Sum_probs=69.0
Q ss_pred EEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccc-e
Q 040145 121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSF-F 199 (402)
Q Consensus 121 ~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~-~ 199 (402)
+.+||..+.+.... +.... ..-.++.+..++.+++.|+.++ .+.+||..+..-.. .+...... .
T Consensus 132 i~vwd~~~~~~~~~--l~~h~----~~V~~v~~~~~~~~l~sgs~D~-------~i~iwd~~~~~~~~--~~~~h~~~V~ 196 (410)
T 1vyh_C 132 IKVWDYETGDFERT--LKGHT----DSVQDISFDHSGKLLASCSADM-------TIKLWDFQGFECIR--TMHGHDHNVS 196 (410)
T ss_dssp EEEEETTTCCCCEE--ECCCS----SCEEEEEECTTSSEEEEEETTS-------CCCEEETTSSCEEE--CCCCCSSCEE
T ss_pred EEEEECCCCcEEEE--EeccC----CcEEEEEEcCCCCEEEEEeCCC-------eEEEEeCCCCceeE--EEcCCCCCEE
Confidence 67788776643221 11000 1233444545677888887632 57788987654222 22211111 2
Q ss_pred EEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEe
Q 040145 200 ASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYD 276 (402)
Q Consensus 200 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd 276 (402)
++... ++..++.|+. -..+.+||..++.-... +.........+.. ++.+++.|+.+ ..+.+||
T Consensus 197 ~v~~~p~~~~l~s~s~------D~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~g~~l~s~s~D------~~v~vwd 262 (410)
T 1vyh_C 197 SVSIMPNGDHIVSASR------DKTIKMWEVQTGYCVKT--FTGHREWVRMVRPNQDGTLIASCSND------QTVRVWV 262 (410)
T ss_dssp EEEECSSSSEEEEEET------TSEEEEEETTTCCEEEE--EECCSSCEEEEEECTTSSEEEEEETT------SCEEEEE
T ss_pred EEEEeCCCCEEEEEeC------CCeEEEEECCCCcEEEE--EeCCCccEEEEEECCCCCEEEEEcCC------CeEEEEE
Confidence 22222 4556666765 45688999987753221 1111111222222 56777777653 3678888
Q ss_pred CCCCCe
Q 040145 277 PSTDNW 282 (402)
Q Consensus 277 ~~~~~W 282 (402)
..+..-
T Consensus 263 ~~~~~~ 268 (410)
T 1vyh_C 263 VATKEC 268 (410)
T ss_dssp TTTCCE
T ss_pred CCCCce
Confidence 877653
No 92
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=96.92 E-value=0.12 Score=44.95 Aligned_cols=188 Identities=12% Similarity=0.069 Sum_probs=102.5
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCc--eeecCCCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCC
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVMNKMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKG 232 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 232 (402)
.+.+++.|.. ...+.++|+.|++ |+.-..- ....+.+.. -+++|++.+ ...+..||+ ++
T Consensus 4 ~~~~lv~~~~-------~~~v~~~d~~tG~~~w~~~~~~--~~~~~~~~~~pdG~ilvs~--------~~~V~~~d~-~G 65 (276)
T 3no2_A 4 PQHLLVGGSG-------WNKIAIINKDTKEIVWEYPLEK--GWECNSVAATKAGEILFSY--------SKGAKMITR-DG 65 (276)
T ss_dssp CCEEEEECTT-------CSEEEEEETTTTEEEEEEECCT--TCCCCEEEECTTSCEEEEC--------BSEEEEECT-TS
T ss_pred CCcEEEeeCC-------CCEEEEEECCCCeEEEEeCCCc--cCCCcCeEECCCCCEEEeC--------CCCEEEECC-CC
Confidence 5678887764 3479999998885 7654321 112233333 477888832 356999999 55
Q ss_pred c--EEEcCCCCCCCcceeEEE-ECCEEEEEcccccCCccCCcEEEEeCCCC-Ceeec-ccccc---CCCceeEEEECCEE
Q 040145 233 N--WRTIASMGTNMASYDAAV-LDGKLLVTEGWLWPFFVSPRGQVYDPSTD-NWESM-AVGLR---EGWTGSSVVVYEHL 304 (402)
Q Consensus 233 ~--W~~~~~~~~~~~~~~~~~-~~g~ly~~gG~~~~~~~~~~~~~yd~~~~-~W~~~-~~~~~---~~~~~~~~~~~~~l 304 (402)
+ |+.-.+ .....+.+.. .+|.+++..... ...++.+|+..+ .|+.- ..... ..........+|.+
T Consensus 66 ~~~W~~~~~--~~~~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~ 138 (276)
T 3no2_A 66 RELWNIAAP--AGCEMQTARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNY 138 (276)
T ss_dssp CEEEEEECC--TTCEEEEEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCE
T ss_pred CEEEEEcCC--CCccccccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCE
Confidence 3 764431 1111222222 377777764421 126788887443 24421 11110 11112223456777
Q ss_pred EEEeccCCcEEEEEeCCCC-ceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEecccccccCceeeeEEEE
Q 040145 305 FVVSELERMKLKVYDPSTD-SWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVV 383 (402)
Q Consensus 305 ~~~gg~~~~~~~~yd~~~~-~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W~~~ 383 (402)
++... ....+..||++.+ .|+.-. +. .........+|.++|.+...+ .|..+|+... +..|+.-
T Consensus 139 lv~~~-~~~~v~~~d~~G~~~w~~~~--~~----~~~~~~~~~~g~~~v~~~~~~----~v~~~d~~tG----~~~w~~~ 203 (276)
T 3no2_A 139 LVPLF-ATSEVREIAPNGQLLNSVKL--SG----TPFSSAFLDNGDCLVACGDAH----CFVQLNLESN----RIVRRVN 203 (276)
T ss_dssp EEEET-TTTEEEEECTTSCEEEEEEC--SS----CCCEEEECTTSCEEEECBTTS----EEEEECTTTC----CEEEEEE
T ss_pred EEEec-CCCEEEEECCCCCEEEEEEC--CC----CccceeEcCCCCEEEEeCCCC----eEEEEeCcCC----cEEEEec
Confidence 66544 3568999999843 365432 11 112244455788888877543 3788886532 3467764
No 93
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=96.91 E-value=0.034 Score=50.23 Aligned_cols=189 Identities=8% Similarity=-0.052 Sum_probs=93.8
Q ss_pred eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccccc-ceEEEEE--CCEEEEEcCCCCCCCCCCeeE
Q 040145 149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARS-FFASGVI--GGMIYVAGGSSADLFELDSAE 225 (402)
Q Consensus 149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 225 (402)
.++++..++..++.|+.+ ..+.+||..+++-.. .+..... -.+++.. +..+++.|+. -..+.
T Consensus 131 ~~v~~spdg~~l~sgs~d-------~~i~iwd~~~~~~~~--~~~~h~~~V~~~~~~~~~~~~l~s~s~------D~~v~ 195 (344)
T 4gqb_B 131 STVSVLSSGTQAVSGSKD-------ICIKVWDLAQQVVLS--SYRAHAAQVTCVAASPHKDSVFLSCSE------DNRIL 195 (344)
T ss_dssp EEEEECTTSSEEEEEETT-------SCEEEEETTTTEEEE--EECCCSSCEEEEEECSSCTTEEEEEET------TSCEE
T ss_pred EEEEECCCCCEEEEEeCC-------CeEEEEECCCCcEEE--EEcCcCCceEEEEecCCCCCceeeecc------ccccc
Confidence 444554577788888763 268999998875322 1111111 1222222 2356777765 34588
Q ss_pred EEcCCCCcEEEcCCCCCCCcceeEEEE---CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--
Q 040145 226 VLDPVKGNWRTIASMGTNMASYDAAVL---DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV-- 300 (402)
Q Consensus 226 ~yd~~t~~W~~~~~~~~~~~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-- 300 (402)
+||..+.+-...-..........++.+ ++.+++.|+.+ ..+.+||..+++- +.........-..+.+
T Consensus 196 iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d------g~v~~wd~~~~~~--~~~~~~h~~~v~~v~fsp 267 (344)
T 4gqb_B 196 LWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN------GTVSLVDTKSTSC--VLSSAVHSQCVTGLVFSP 267 (344)
T ss_dssp EEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT------SEEEEEESCC--C--CEEEECCSSCEEEEEECS
T ss_pred cccccccceeeeeecceeeccceeeeecCCCCcceEEeccC------CcEEEEECCCCcE--EEEEcCCCCCEEEEEEcc
Confidence 999987764322111111112222222 45677777653 3688899876542 2110111111112333
Q ss_pred CC-EEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE--eCCEEEEEecCceeeeEEEEecc
Q 040145 301 YE-HLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA--CDCRVYVVGRNLHVAVGHITRLS 368 (402)
Q Consensus 301 ~~-~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~--~~~~i~v~GG~~~~~~~~v~~~~ 368 (402)
++ ++++.|+. ...+.+||..+.+-.+.. ... ..-.+++. .+..|++.||.++. .-+|.++
T Consensus 268 ~g~~~lasgs~-D~~i~vwd~~~~~~~~~~----~H~-~~V~~v~~sp~~~~llas~s~D~~--v~~w~v~ 330 (344)
T 4gqb_B 268 HSVPFLASLSE-DCSLAVLDSSLSELFRSQ----AHR-DFVRDATWSPLNHSLLTTVGWDHQ--VVHHVVP 330 (344)
T ss_dssp SSSCCEEEEET-TSCEEEECTTCCEEEEEC----CCS-SCEEEEEECSSSTTEEEEEETTSC--EEEEECC
T ss_pred CCCeEEEEEeC-CCeEEEEECCCCcEEEEc----CCC-CCEEEEEEeCCCCeEEEEEcCCCe--EEEEECC
Confidence 34 45555555 457899999877543332 111 11123333 24457777887655 2345543
No 94
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=96.90 E-value=0.38 Score=47.84 Aligned_cols=212 Identities=12% Similarity=0.085 Sum_probs=107.5
Q ss_pred CCeEEEEEEe-CCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCC------CCCCceE
Q 040145 104 DPWLFVFAFH-KCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDV------DCPLDLV 176 (402)
Q Consensus 104 ~~~l~~~gg~-~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~------~~~~~~~ 176 (402)
++..+++..+ .......++++|..+++......++ . ..+...+...+++.++++..+... ......+
T Consensus 131 DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~----~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v 204 (695)
T 2bkl_A 131 DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE--G----GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTI 204 (695)
T ss_dssp TSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS--C----CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEE
T ss_pred CCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccC--c----ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEE
Confidence 4444444333 3334567889999888764111111 0 112333444466555555442210 0124569
Q ss_pred EEEECCCCcee--ecCCCccc-ccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE
Q 040145 177 LKYEMQKNRWT--VMNKMITA-RSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL 252 (402)
Q Consensus 177 ~~~d~~t~~W~--~~~~~~~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~ 252 (402)
++++..|+.-. .+...+.. ......... +++.+++...+.. ....++++|..+..++.+..-.... ...+..
T Consensus 205 ~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~--~~~~l~~~~~~~~~~~~l~~~~~~~--~~~~~~ 280 (695)
T 2bkl_A 205 RYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGW--SENDVYWKRPGEKDFRLLVKGVGAK--YEVHAW 280 (695)
T ss_dssp EEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETT--TEEEEEEECTTCSSCEEEEECSSCC--EEEEEE
T ss_pred EEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCC--CceEEEEEcCCCCceEEeecCCCce--EEEEec
Confidence 99999887632 22222211 222233332 4443333332211 1457888887777787775322221 222235
Q ss_pred CCEEEEEcccccCCccCCcEEEEeCCCCC---eeeccccccCCCceeEEEECCEEEEEeccC-CcEEEEEeCCCCceeec
Q 040145 253 DGKLLVTEGWLWPFFVSPRGQVYDPSTDN---WESMAVGLREGWTGSSVVVYEHLFVVSELE-RMKLKVYDPSTDSWETI 328 (402)
Q Consensus 253 ~g~ly~~gG~~~~~~~~~~~~~yd~~~~~---W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~-~~~~~~yd~~~~~W~~~ 328 (402)
+|.+|+..... .....++.+|+.+.. |..+-...+..........++++++....+ ...++.+|+....-..+
T Consensus 281 ~g~l~~~s~~~---~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l 357 (695)
T 2bkl_A 281 KDRFYVLTDEG---APRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTV 357 (695)
T ss_dssp TTEEEEEECTT---CTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEEC
T ss_pred CCcEEEEECCC---CCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeEEe
Confidence 66666654322 112478999997765 877754222222222234488888776544 35788889765544444
No 95
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=96.87 E-value=0.2 Score=44.47 Aligned_cols=154 Identities=15% Similarity=0.158 Sum_probs=74.9
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEEECC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQ 182 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~ 182 (402)
++.+|+..... ..+.++|+.+.+....-..+.. ......++..++ .+|+.+.. ...+++||+.
T Consensus 10 ~~~~~v~~~~~----~~v~~~d~~~~~~~~~~~~~~~-----~~~~~~~~s~dg~~~~v~~~~-------~~~i~~~d~~ 73 (349)
T 1jmx_B 10 GHEYMIVTNYP----NNLHVVDVASDTVYKSCVMPDK-----FGPGTAMMAPDNRTAYVLNNH-------YGDIYGIDLD 73 (349)
T ss_dssp TCEEEEEEETT----TEEEEEETTTTEEEEEEECSSC-----CSSCEEEECTTSSEEEEEETT-------TTEEEEEETT
T ss_pred CCEEEEEeCCC----CeEEEEECCCCcEEEEEecCCC-----CCCceeEECCCCCEEEEEeCC-------CCcEEEEeCC
Confidence 56677766432 3588999988875432222210 011223333344 57777643 2479999999
Q ss_pred CCceeecCCCcc-----cccceEEEEE-CC-EEEEEcCC-----CCCCCCCCeeEEEcCCCCcEEE-cCCCCCCCcceeE
Q 040145 183 KNRWTVMNKMIT-----ARSFFASGVI-GG-MIYVAGGS-----SADLFELDSAEVLDPVKGNWRT-IASMGTNMASYDA 249 (402)
Q Consensus 183 t~~W~~~~~~~~-----~r~~~~~~~~-~~-~iyv~GG~-----~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~~~~ 249 (402)
+++-...-..+. ......++.. ++ .+|+.+.. +........+.+||..++.-.. +.....+......
T Consensus 74 t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 153 (349)
T 1jmx_B 74 TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM 153 (349)
T ss_dssp TTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCE
T ss_pred CCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccce
Confidence 886543211111 1112233332 34 55555421 0000002578999988743211 1111112222222
Q ss_pred EE-ECCEEEEEcccccCCccCCcEEEEeCCCCCe
Q 040145 250 AV-LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNW 282 (402)
Q Consensus 250 ~~-~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W 282 (402)
+. -+|++|+.++ .+.+||+.+++-
T Consensus 154 ~~s~dg~l~~~~~---------~i~~~d~~~~~~ 178 (349)
T 1jmx_B 154 RAADDGSLYVAGP---------DIYKMDVKTGKY 178 (349)
T ss_dssp EECTTSCEEEESS---------SEEEECTTTCCE
T ss_pred eECCCCcEEEccC---------cEEEEeCCCCce
Confidence 22 3677777432 378888877653
No 96
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=96.87 E-value=0.043 Score=48.75 Aligned_cols=235 Identities=11% Similarity=0.118 Sum_probs=109.0
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEcc--CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccc-
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPR--EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITAR- 196 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r- 196 (402)
.+.+||..+.....+..+.... ....+++... ++.+++.|+.+ ..+.+||..++.|..+..+....
T Consensus 36 ~v~lwd~~~~~~~~~~~l~gH~----~~V~~v~~~~~~~~~~l~s~s~D-------~~v~iWd~~~~~~~~~~~~~~h~~ 104 (316)
T 3bg1_A 36 SVKIFDVRNGGQILIADLRGHE----GPVWQVAWAHPMYGNILASCSYD-------RKVIIWREENGTWEKSHEHAGHDS 104 (316)
T ss_dssp EEEEEEEETTEEEEEEEEECCS----SCEEEEEECCGGGSSCEEEEETT-------SCEEEECCSSSCCCEEEEECCCSS
T ss_pred eEEEEEecCCCcEEEEEEcCCC----ccEEEEEeCCCCCCCEEEEEECC-------CEEEEEECCCCcceEEEEccCCCC
Confidence 3677887766433222222110 1223333321 25677777763 26889999888775543222111
Q ss_pred cceEEEEE-C--CEEEEEcCCCCCCCCCCeeEEEcCCCC-cEEEcCCCCCCCcceeEEEE-------------------C
Q 040145 197 SFFASGVI-G--GMIYVAGGSSADLFELDSAEVLDPVKG-NWRTIASMGTNMASYDAAVL-------------------D 253 (402)
Q Consensus 197 ~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~~~~~~~~~~~~~-------------------~ 253 (402)
.-.+++.. + +.+++.|+. -..+.+||..+. .|.....+.........+.. +
T Consensus 105 ~V~~v~~~p~~~g~~lasgs~------D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (316)
T 3bg1_A 105 SVNSVCWAPHDYGLILACGSS------DGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNY 178 (316)
T ss_dssp CCCEEEECCTTTCSCEEEECS------SSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCC
T ss_pred ceEEEEECCCCCCcEEEEEcC------CCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccc
Confidence 11233332 2 456777765 345777887765 46543322211111111111 1
Q ss_pred CEEEEEcccccCCccCCcEEEEeCCC-CCeeeccccccCCCce-eEEEE--C----CEEEEEeccCCcEEEEEeCCC---
Q 040145 254 GKLLVTEGWLWPFFVSPRGQVYDPST-DNWESMAVGLREGWTG-SSVVV--Y----EHLFVVSELERMKLKVYDPST--- 322 (402)
Q Consensus 254 g~ly~~gG~~~~~~~~~~~~~yd~~~-~~W~~~~~~~~~~~~~-~~~~~--~----~~l~~~gg~~~~~~~~yd~~~--- 322 (402)
+++++.|+.+ ..+..||..+ +.|..+.. +...... ..+.+ + +.+++.|+. ...+.+||..+
T Consensus 179 ~~~l~sgs~D------~~v~lWd~~~~~~~~~~~~-l~~h~~~V~~v~~sp~~~~~~~~las~s~-D~~v~iw~~~~~~~ 250 (316)
T 3bg1_A 179 IKRFASGGCD------NLIKLWKEEEDGQWKEEQK-LEAHSDWVRDVAWAPSIGLPTSTIASCSQ-DGRVFIWTCDDASS 250 (316)
T ss_dssp CCBEECCBTT------SBCCEEEECTTSCEEEEEC-CBCCSSCEEEEECCCCSSCSCCEEEEEET-TCEEEEEECSSTTC
T ss_pred cceEEEecCC------CeEEEEEeCCCCccceeee-cccCCCceEEEEecCCCCCCCceEEEEcC-CCeEEEEEccCccc
Confidence 3455666543 2566777753 45665543 2111111 12232 2 256666665 45788888765
Q ss_pred CceeecCCCCCCccccCCeEEE-EeCCEEEEEecCceeeeEEEEecccccccCceeeeEEEEeCCCCCCC
Q 040145 323 DSWETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVVDAPDNFSD 391 (402)
Q Consensus 323 ~~W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W~~~~~~~~~~~ 391 (402)
..|.... +........+++ ..++.+++.||.++. ..+|..+. . ..|+.+..-.+-.+
T Consensus 251 ~~~~~~~---~~~~~~~v~~v~~sp~g~~las~~~D~~--v~lw~~~~-~------g~~~~~~~~~~~~~ 308 (316)
T 3bg1_A 251 NTWSPKL---LHKFNDVVWHVSWSITANILAVSGGDNK--VTLWKESV-D------GQWVCISDVNKGQG 308 (316)
T ss_dssp CCCBCCE---EEECSSCEEEEEECTTTCCEEEEESSSC--EEEEEECT-T------SCEEEEEECC----
T ss_pred cchhhhh---hhcCCCcEEEEEEcCCCCEEEEEcCCCe--EEEEEECC-C------CcEEEeeeccCCCC
Confidence 3343110 110001112233 356778888876554 23444332 1 25777665444443
No 97
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=96.87 E-value=0.24 Score=44.54 Aligned_cols=238 Identities=7% Similarity=0.041 Sum_probs=109.5
Q ss_pred CCeEEEEEEeC-CCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECC
Q 040145 104 DPWLFVFAFHK-CTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQ 182 (402)
Q Consensus 104 ~~~l~~~gg~~-~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~ 182 (402)
+..||+...+. ......++.+|..+.+...+...+... ......++ .++.||+.... ...+.+|+..
T Consensus 61 g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~----~~p~~~~~-dg~~l~~~~~~-------~~~v~~~~~~ 128 (361)
T 3scy_A 61 GKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMG----ADPCYLTT-NGKNIVTANYS-------GGSITVFPIG 128 (361)
T ss_dssp SSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSS----SCEEEEEE-CSSEEEEEETT-------TTEEEEEEBC
T ss_pred CCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCC----CCcEEEEE-CCCEEEEEECC-------CCEEEEEEeC
Confidence 45577665431 223445566676667766554433111 11222333 35567776532 2378889886
Q ss_pred CCc-eeecCC-------Ccc-----cccceEEEEE-CC-EEEEEcCCCCCCCCCCeeEEEcCCCCc-------EEE----
Q 040145 183 KNR-WTVMNK-------MIT-----ARSFFASGVI-GG-MIYVAGGSSADLFELDSAEVLDPVKGN-------WRT---- 236 (402)
Q Consensus 183 t~~-W~~~~~-------~~~-----~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~-------W~~---- 236 (402)
++. ...+.. -+. ....+.++.. ++ .+|+.+.. ...+.+|+..... ...
T Consensus 129 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~------~~~v~v~~~~~~~~~~~~~~l~~~~~~ 202 (361)
T 3scy_A 129 QDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG------TDQIHKFNINPNANADNKEKFLTKGTP 202 (361)
T ss_dssp TTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT------TTEEEEEEECTTCCTTTCCCCEEEEEE
T ss_pred CCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC------CCEEEEEEEcCCCCcccccceeecccc
Confidence 432 222110 010 0112334443 44 57776532 3567777655432 211
Q ss_pred -cCCCCCCCcceeEEEE--CCE-EEEEcccccCCccCCcEEEEeCCCCCeeeccc--cccCCCcee-EEEE--CCE-EEE
Q 040145 237 -IASMGTNMASYDAAVL--DGK-LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV--GLREGWTGS-SVVV--YEH-LFV 306 (402)
Q Consensus 237 -~~~~~~~~~~~~~~~~--~g~-ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~--~~~~~~~~~-~~~~--~~~-l~~ 306 (402)
....+.. .....+.+ +|+ +|+.+.. ...+.+||..+++...+.. ..+...... .+.+ +|+ ||+
T Consensus 203 ~~~~~~~~-~~~~~~~~spdg~~l~v~~~~------~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v 275 (361)
T 3scy_A 203 EAFKVAPG-SGPRHLIFNSDGKFAYLINEI------GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYA 275 (361)
T ss_dssp EEEECCTT-CCEEEEEECTTSSEEEEEETT------TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEE
T ss_pred cceecCCC-CCCeEEEEcCCCCEEEEEcCC------CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEE
Confidence 1111111 11222222 565 6665532 2468899988777655432 112211111 2333 565 554
Q ss_pred EeccC-CcEEEEEeC--CCCceeecCCCCCCccccCCeEEE-EeCCE-EEEEecCceeeeEEEEecccccc
Q 040145 307 VSELE-RMKLKVYDP--STDSWETIEGPPLPEQICKPFAVN-ACDCR-VYVVGRNLHVAVGHITRLSTSEK 372 (402)
Q Consensus 307 ~gg~~-~~~~~~yd~--~~~~W~~~~~~~~p~~~~~~~~~~-~~~~~-i~v~GG~~~~~~~~v~~~~~~~~ 372 (402)
. ... .+.+.+|+. .+.+++.+...+.. .....++ ..+++ ||+.+...+ ...+|.+|+...
T Consensus 276 ~-~~~~~~~i~v~~~~~~~g~~~~~~~~~~g---~~~~~~~~spdg~~l~~~~~~~~--~v~v~~~d~~~g 340 (361)
T 3scy_A 276 S-NRLKADGVAIFKVDETNGTLTKVGYQLTG---IHPRNFIITPNGKYLLVACRDTN--VIQIFERDQATG 340 (361)
T ss_dssp E-ECSSSCEEEEEEECTTTCCEEEEEEEECS---SCCCEEEECTTSCEEEEEETTTT--EEEEEEECTTTC
T ss_pred E-CCCCCCEEEEEEEcCCCCcEEEeeEecCC---CCCceEEECCCCCEEEEEECCCC--CEEEEEEECCCC
Confidence 4 433 456666655 46677666532221 2222333 34555 555543332 245666775443
No 98
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=96.84 E-value=0.034 Score=50.15 Aligned_cols=187 Identities=12% Similarity=0.171 Sum_probs=99.9
Q ss_pred EEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcc--cccceEEEEE-CCEEEEEcCCCCCCCCCCeeEE
Q 040145 150 CVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMIT--ARSFFASGVI-GGMIYVAGGSSADLFELDSAEV 226 (402)
Q Consensus 150 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~--~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~ 226 (402)
.++...++.+++.||.+ ..+.+||..++.|.....+.. ...-.+++.. +++.++.|+. -..+.+
T Consensus 21 ~l~~sp~g~~las~~~D-------~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~------D~~v~i 87 (345)
T 3fm0_A 21 FLAWNPAGTLLASCGGD-------RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF------DATTCI 87 (345)
T ss_dssp EEEECTTSSCEEEEETT-------SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEET------TSCEEE
T ss_pred EEEECCCCCEEEEEcCC-------CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEEC------CCcEEE
Confidence 34444577788888763 268889988887754322211 1112223332 5666777775 345778
Q ss_pred EcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCC-eeeccccccCCCce-eEEEE--
Q 040145 227 LDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDN-WESMAVGLREGWTG-SSVVV-- 300 (402)
Q Consensus 227 yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~~~~~-~~~~~-- 300 (402)
||..++.+..+..+.........+.+ ++.+++.|+.+ ..+.+||+.+.. +..+.. ....... ..+..
T Consensus 88 w~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~-~~~h~~~v~~~~~~p 160 (345)
T 3fm0_A 88 WKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD------KSVWVWEVDEEDEYECVSV-LNSHTQDVKHVVWHP 160 (345)
T ss_dssp EEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETT------SCEEEEEECTTSCEEEEEE-ECCCCSCEEEEEECS
T ss_pred EEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECC------CeEEEEECCCCCCeEEEEE-ecCcCCCeEEEEECC
Confidence 88877766554433332222333333 67777777754 368888886643 332322 1111111 11222
Q ss_pred CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEE-EeCCEEEEEecCcee
Q 040145 301 YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLHV 359 (402)
Q Consensus 301 ~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~ 359 (402)
++.+++.|+. ...+.+||..+..|..+.. +......-.++. ..+++.++.|+.++.
T Consensus 161 ~~~~l~s~s~-d~~i~~w~~~~~~~~~~~~--~~~h~~~v~~l~~sp~g~~l~s~s~D~~ 217 (345)
T 3fm0_A 161 SQELLASASY-DDTVKLYREEEDDWVCCAT--LEGHESTVWSLAFDPSGQRLASCSDDRT 217 (345)
T ss_dssp SSSCEEEEET-TSCEEEEEEETTEEEEEEE--ECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCCEEEEEeC-CCcEEEEEecCCCEEEEEE--ecCCCCceEEEEECCCCCEEEEEeCCCe
Confidence 5666777665 4578889988888765432 211111112232 246777777776544
No 99
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.2 Score=44.74 Aligned_cols=220 Identities=11% Similarity=-0.020 Sum_probs=103.6
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK 183 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t 183 (402)
++.+++.++.+. .+.+||..+.+-... +.... ....++.+..++..++.|+.+ ..+.+||..+
T Consensus 43 ~~~~l~~~~~dg----~i~vwd~~~~~~~~~--~~~h~----~~v~~~~~~~~~~~l~s~~~d-------g~i~iwd~~~ 105 (369)
T 3zwl_B 43 EGDLLFSCSKDS----SASVWYSLNGERLGT--LDGHT----GTIWSIDVDCFTKYCVTGSAD-------YSIKLWDVSN 105 (369)
T ss_dssp TSCEEEEEESSS----CEEEEETTTCCEEEE--ECCCS----SCEEEEEECTTSSEEEEEETT-------TEEEEEETTT
T ss_pred CCCEEEEEeCCC----EEEEEeCCCchhhhh--hhhcC----CcEEEEEEcCCCCEEEEEeCC-------CeEEEEECCC
Confidence 344444444332 377888776654321 11101 223344444456677777652 3799999988
Q ss_pred CceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCc----EEEcCCCCC-----CCc--ceeEEE
Q 040145 184 NRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGN----WRTIASMGT-----NMA--SYDAAV 251 (402)
Q Consensus 184 ~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~----W~~~~~~~~-----~~~--~~~~~~ 251 (402)
++-...-. .......+... ++..+++++.+.... ...+.+||..+.. +......+. ... ....+.
T Consensus 106 ~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~-~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (369)
T 3zwl_B 106 GQCVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKN-PGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG 182 (369)
T ss_dssp CCEEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTB-CCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEE
T ss_pred CcEEEEee--cCCCeEEEEEccCCCEEEEecCCccCC-CCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEE
Confidence 76433222 11112222222 445555554421111 3567788776542 221111110 000 222222
Q ss_pred E--CCEEEEEcccccCCccCCcEEEEeCCCC-Cee-eccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCce
Q 040145 252 L--DGKLLVTEGWLWPFFVSPRGQVYDPSTD-NWE-SMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSW 325 (402)
Q Consensus 252 ~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~-~W~-~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W 325 (402)
+ +++.++.|+.+ ..+..||+.++ .-. .+.. . .... ..+.+ ++.+++.++. ...+.+||..+..-
T Consensus 183 ~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~-~-~~~v-~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~ 252 (369)
T 3zwl_B 183 WSTKGKYIIAGHKD------GKISKYDVSNNYEYVDSIDL-H-EKSI-SDMQFSPDLTYFITSSR-DTNSFLVDVSTLQV 252 (369)
T ss_dssp ECGGGCEEEEEETT------SEEEEEETTTTTEEEEEEEC-C-SSCE-EEEEECTTSSEEEEEET-TSEEEEEETTTCCE
T ss_pred EcCCCCEEEEEcCC------CEEEEEECCCCcEeEEEEec-C-CCce-eEEEECCCCCEEEEecC-CceEEEEECCCCce
Confidence 2 56666666543 36899999873 221 1111 1 1111 12222 6666666665 55899999987654
Q ss_pred eecCCCCCCccccCCeEEEEeCCEEEEEecCc
Q 040145 326 ETIEGPPLPEQICKPFAVNACDCRVYVVGRNL 357 (402)
Q Consensus 326 ~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~ 357 (402)
...- .... .........+++.+++|+..
T Consensus 253 ~~~~--~~~~--~~~~~~~~~~~~~l~~~~~~ 280 (369)
T 3zwl_B 253 LKKY--ETDC--PLNTAVITPLKEFIILGGGQ 280 (369)
T ss_dssp EEEE--ECSS--CEEEEEECSSSSEEEEEECC
T ss_pred eeee--cCCC--CceeEEecCCCceEEEeecC
Confidence 4322 1110 11122334456666666644
No 100
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=96.81 E-value=0.27 Score=44.21 Aligned_cols=193 Identities=9% Similarity=0.005 Sum_probs=88.7
Q ss_pred CceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccc-
Q 040145 117 GKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITA- 195 (402)
Q Consensus 117 ~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~- 195 (402)
....++.+|+.+.+...+....... . ...+....+..||+.+... +. ...-.+|.+|..+++.+.+...+..
T Consensus 27 ~~i~~~~~d~~~g~~~~~~~~~~~~----p-~~l~~spdg~~l~~~~~~~-~~-~~~v~~~~~~~~~g~~~~~~~~~~~~ 99 (361)
T 3scy_A 27 KGIYTFRFNEETGESLPLSDAEVAN----P-SYLIPSADGKFVYSVNEFS-KD-QAAVSAFAFDKEKGTLHLLNTQKTMG 99 (361)
T ss_dssp CEEEEEEEETTTCCEEEEEEEECSC----C-CSEEECTTSSEEEEEECCS-ST-TCEEEEEEEETTTTEEEEEEEEECSS
T ss_pred CCEEEEEEeCCCCCEEEeecccCCC----C-ceEEECCCCCEEEEEEccC-CC-CCcEEEEEEeCCCCcEEEeeEeccCC
Confidence 4455677788888876654331111 1 1222222234577665431 10 1222345556666777766544422
Q ss_pred ccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc-EEEcC-------CCCCC-C----cceeEEEE-CCE-EEEEc
Q 040145 196 RSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN-WRTIA-------SMGTN-M----ASYDAAVL-DGK-LLVTE 260 (402)
Q Consensus 196 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~-------~~~~~-~----~~~~~~~~-~g~-ly~~g 260 (402)
.....++.-+..+|+.... ...+.+|+..++. ...+. .-+.+ | ..+..+.. +|+ +|+.+
T Consensus 100 ~~p~~~~~dg~~l~~~~~~------~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 173 (361)
T 3scy_A 100 ADPCYLTTNGKNIVTANYS------GGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADD 173 (361)
T ss_dssp SCEEEEEECSSEEEEEETT------TTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEE
T ss_pred CCcEEEEECCCEEEEEECC------CCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEe
Confidence 2222333323356666532 3567888876432 11110 00110 0 11223332 565 66654
Q ss_pred ccccCCccCCcEEEEeCCCCC-------eeec---c-ccccCCCceeEEEE--CCE-EEEEeccCCcEEEEEeCCCCcee
Q 040145 261 GWLWPFFVSPRGQVYDPSTDN-------WESM---A-VGLREGWTGSSVVV--YEH-LFVVSELERMKLKVYDPSTDSWE 326 (402)
Q Consensus 261 G~~~~~~~~~~~~~yd~~~~~-------W~~~---~-~~~~~~~~~~~~~~--~~~-l~~~gg~~~~~~~~yd~~~~~W~ 326 (402)
.. ...+.+|+..... .... . ...+.......+.+ +|+ +|+.. .....+.+||..+.+..
T Consensus 174 ~~------~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~-~~~~~v~v~~~~~g~~~ 246 (361)
T 3scy_A 174 LG------TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLIN-EIGGTVIAFRYADGMLD 246 (361)
T ss_dssp TT------TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE-TTTCEEEEEEEETTEEE
T ss_pred CC------CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEc-CCCCeEEEEEecCCceE
Confidence 32 2367777665443 2211 1 01111111112233 555 66554 33567899998877765
Q ss_pred ecC
Q 040145 327 TIE 329 (402)
Q Consensus 327 ~~~ 329 (402)
.+.
T Consensus 247 ~~~ 249 (361)
T 3scy_A 247 EIQ 249 (361)
T ss_dssp EEE
T ss_pred EeE
Confidence 544
No 101
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=96.80 E-value=0.31 Score=44.94 Aligned_cols=181 Identities=10% Similarity=0.082 Sum_probs=93.6
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF 199 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~ 199 (402)
.++++|..+++...+-.+.... ..-.+++...++..++.|+.+ ..+.+||..+++-... +.......
T Consensus 126 tV~lWd~~tg~~~~~~~~~~~~----~~V~sv~fspdg~~lasgs~D-------g~v~iWd~~~~~~~~~--~~~h~~~v 192 (420)
T 4gga_A 126 SVYLWSASSGDILQLLQMEQPG----EYISSVAWIKEGNYLAVGTSS-------AEVQLWDVQQQKRLRN--MTSHSARV 192 (420)
T ss_dssp EEEEEETTTCCEEEEEECCSTT----CCEEEEEECTTSSEEEEEETT-------SCEEEEETTTTEEEEE--ECCCSSCE
T ss_pred EEEEEECCCCCEEEEEEecCCC----CcEEEEEECCCCCEEEEEECC-------CeEEEEEcCCCcEEEE--EeCCCCce
Confidence 4889999988766543333111 223455565677888888763 2699999988753221 11112223
Q ss_pred EEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEE--ECCEEEEEcccccCCccCCcEEEEeC
Q 040145 200 ASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAV--LDGKLLVTEGWLWPFFVSPRGQVYDP 277 (402)
Q Consensus 200 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~--~~g~ly~~gG~~~~~~~~~~~~~yd~ 277 (402)
.....++.+++.|+. ...+..+|..+...... .+........... .++..++.++.+ ..+.++|.
T Consensus 193 ~~~s~~~~~l~sgs~------d~~i~~~d~~~~~~~~~-~~~~h~~~~~~~~~~~~g~~l~s~~~D------~~v~i~~~ 259 (420)
T 4gga_A 193 GSLSWNSYILSSGSR------SGHIHHHDVRVAEHHVA-TLSGHSQEVCGLRWAPDGRHLASGGND------NLVNVWPS 259 (420)
T ss_dssp EEEEEETTEEEEEET------TSEEEEEETTSSSCEEE-EEECCSSCEEEEEECTTSSEEEEEETT------SCEEEEES
T ss_pred EEEeeCCCEEEEEeC------CCceeEeeecccceeeE-EecccccceeeeeecCCCCeeeeeecc------ccceEEee
Confidence 334456677777765 45577777765432211 1111111111222 256666666643 35777887
Q ss_pred CCCC--eeeccccccCCCceeEEEE---CCEEEEE-eccCCcEEEEEeCCCCcee
Q 040145 278 STDN--WESMAVGLREGWTGSSVVV---YEHLFVV-SELERMKLKVYDPSTDSWE 326 (402)
Q Consensus 278 ~~~~--W~~~~~~~~~~~~~~~~~~---~~~l~~~-gg~~~~~~~~yd~~~~~W~ 326 (402)
.+++ +..+.........-.++.. +..+++. +|.....|.+||..+.+-.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~ 314 (420)
T 4gga_A 260 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 314 (420)
T ss_dssp SCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE
T ss_pred ccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc
Confidence 6543 2222211111111111222 3445444 4544568999999887543
No 102
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.78 E-value=0.21 Score=45.82 Aligned_cols=177 Identities=11% Similarity=0.049 Sum_probs=94.5
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF 199 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~ 199 (402)
.+.+||..+.+.......... ....+++...++.+++.|+.+ ..+.+||..+++.... +.......
T Consensus 114 ~v~lw~~~~~~~~~~~~~~~~-----~~v~~v~~s~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~--~~~~~~~v 179 (401)
T 4aez_A 114 NVYVWNADSGSVSALAETDES-----TYVASVKWSHDGSFLSVGLGN-------GLVDIYDVESQTKLRT--MAGHQARV 179 (401)
T ss_dssp EEEEEETTTCCEEEEEECCTT-----CCEEEEEECTTSSEEEEEETT-------SCEEEEETTTCCEEEE--ECCCSSCE
T ss_pred eEEEeeCCCCcEeEeeecCCC-----CCEEEEEECCCCCEEEEECCC-------CeEEEEECcCCeEEEE--ecCCCCce
Confidence 378899988876554333211 223445554567777777652 2689999988753321 11111222
Q ss_pred EEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEE
Q 040145 200 ASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVY 275 (402)
Q Consensus 200 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~y 275 (402)
.....++.+++.|+. ...+.+||..+.. -..+.. .......+.+ ++.+++.|+.+ ..+.+|
T Consensus 180 ~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d------~~v~iw 244 (401)
T 4aez_A 180 GCLSWNRHVLSSGSR------SGAIHHHDVRIANHQIGTLQG---HSSEVCGLAWRSDGLQLASGGND------NVVQIW 244 (401)
T ss_dssp EEEEEETTEEEEEET------TSEEEEEETTSSSCEEEEEEC---CSSCEEEEEECTTSSEEEEEETT------SCEEEE
T ss_pred EEEEECCCEEEEEcC------CCCEEEEecccCcceeeEEcC---CCCCeeEEEEcCCCCEEEEEeCC------CeEEEc
Confidence 223335566677765 4578899987432 111111 1112222222 67777777753 368999
Q ss_pred eCCCCCeeeccccccCCCceeEEEE--CCEEEEEec-cCCcEEEEEeCCCCcee
Q 040145 276 DPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSE-LERMKLKVYDPSTDSWE 326 (402)
Q Consensus 276 d~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg-~~~~~~~~yd~~~~~W~ 326 (402)
|+.+.+-...-..... .....+.. ++.+++.|+ .....+.+||..+.+-.
T Consensus 245 d~~~~~~~~~~~~~~~-~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~ 297 (401)
T 4aez_A 245 DARSSIPKFTKTNHNA-AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV 297 (401)
T ss_dssp ETTCSSEEEEECCCSS-CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE
T ss_pred cCCCCCccEEecCCcc-eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE
Confidence 9987543221111111 11112222 446777764 33568999999876543
No 103
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=96.77 E-value=0.52 Score=46.99 Aligned_cols=250 Identities=8% Similarity=0.032 Sum_probs=122.3
Q ss_pred CCeEEEEEE-eCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCC---------CCCC
Q 040145 104 DPWLFVFAF-HKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDV---------DCPL 173 (402)
Q Consensus 104 ~~~l~~~gg-~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~---------~~~~ 173 (402)
++..+++.. ........++++|..+++........ ......+...+++-++++...... ....
T Consensus 135 Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-------~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (710)
T 2xdw_A 135 DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-------VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLH 207 (710)
T ss_dssp TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-------ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCC
T ss_pred CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-------cccceEEEEeCCCEEEEEEECCccccccccccccCCC
Confidence 334444433 33344457899999998876532111 112223333355433333332110 0224
Q ss_pred ceEEEEECCCCcee--ecCCCc-ccccceEEEEE-CCE-EEEEcCCCCCCCCCCeeEEEcCCC------C--cEEEcCCC
Q 040145 174 DLVLKYEMQKNRWT--VMNKMI-TARSFFASGVI-GGM-IYVAGGSSADLFELDSAEVLDPVK------G--NWRTIASM 240 (402)
Q Consensus 174 ~~~~~~d~~t~~W~--~~~~~~-~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~yd~~t------~--~W~~~~~~ 240 (402)
..+++++..|+... .+...+ .+......... +++ |++..... ... .+.++++|..+ . .++.+...
T Consensus 208 ~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~-~~~-~~~l~~~d~~~~~~~~~~~~~~~~l~~~ 285 (710)
T 2xdw_A 208 QKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREG-CDP-VNRLWYCDLQQESNGITGILKWVKLIDN 285 (710)
T ss_dssp CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECS-SSS-CCEEEEEEGGGSSSSSCSSCCCEEEECS
T ss_pred CEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEcc-CCC-ccEEEEEECcccccccCCccceEEeeCC
Confidence 56999999887643 221111 12222233332 444 44433221 111 46789999876 4 57766432
Q ss_pred CCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCC---CeeeccccccCCCceeEEEE-CCEEEEEeccC-CcEE
Q 040145 241 GTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTD---NWESMAVGLREGWTGSSVVV-YEHLFVVSELE-RMKL 315 (402)
Q Consensus 241 ~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~---~W~~~~~~~~~~~~~~~~~~-~~~l~~~gg~~-~~~~ 315 (402)
..... .....-++.||+.+..... ...++.+|+.+. .|+.+............... ++.+++....+ ...+
T Consensus 286 ~~~~~-~~~s~dg~~l~~~s~~~~~---~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l 361 (710)
T 2xdw_A 286 FEGEY-DYVTNEGTVFTFKTNRHSP---NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTL 361 (710)
T ss_dssp SSSCE-EEEEEETTEEEEEECTTCT---TCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEE
T ss_pred CCcEE-EEEeccCCEEEEEECCCCC---CCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEE
Confidence 22211 1122235678887654321 236899998875 48877543222122223344 67777776544 3468
Q ss_pred EEEeCCCCc-eeecCCCCCCccccCCeEEEE-eCC-EEEEEecCceeeeEEEEecccccc
Q 040145 316 KVYDPSTDS-WETIEGPPLPEQICKPFAVNA-CDC-RVYVVGRNLHVAVGHITRLSTSEK 372 (402)
Q Consensus 316 ~~yd~~~~~-W~~~~~~~~p~~~~~~~~~~~-~~~-~i~v~GG~~~~~~~~v~~~~~~~~ 372 (402)
+++|+.+.+ ...+. .+. ....++.. .++ .|++..... ....+++.||....
T Consensus 362 ~~~~~~~g~~~~~l~---~~~--~~v~~~~~s~d~~~l~~~~ss~-~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 362 QLHDLATGALLKIFP---LEV--GSVVGYSGQKKDTEIFYQFTSF-LSPGIIYHCDLTKE 415 (710)
T ss_dssp EEEETTTCCEEEEEC---CCS--SEEEEEECCTTCSEEEEEEECS-SCCCEEEEEETTSS
T ss_pred EEEECCCCCEEEecC---CCC--ceEEEEecCCCCCEEEEEEeCC-CCCCEEEEEECCCC
Confidence 999985554 44543 331 11112222 234 454443322 23456788876443
No 104
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.77 E-value=0.28 Score=43.84 Aligned_cols=207 Identities=12% Similarity=0.128 Sum_probs=102.3
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCc--eeecCCCccccc
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVMNKMITARS 197 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~r~ 197 (402)
.+.++|..+.+-...-+.. . ....++.+..++..++.||.+ ..+.+||..+.. .+....+.....
T Consensus 78 ~v~iWd~~~~~~~~~~~~~--~----~~v~~~~~s~~~~~l~s~~~d-------~~v~iw~~~~~~~~~~~~~~~~~h~~ 144 (340)
T 1got_B 78 KLIIWDSYTTNKVHAIPLR--S----SWVMTCAYAPSGNYVACGGLD-------NICSIYNLKTREGNVRVSRELAGHTG 144 (340)
T ss_dssp EEEEEETTTCCEEEEEECS--S----SCEEEEEECTTSSEEEEEETT-------CEEEEEETTTCSBSCEEEEEEECCSS
T ss_pred cEEEEECCCCCcceEeecC--C----ccEEEEEECCCCCEEEEEeCC-------CeEEEEECccCCCcceeEEEecCCCc
Confidence 3677887765532211111 1 223344454567777788763 378899987653 111111111111
Q ss_pred -ceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEE
Q 040145 198 -FFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQ 273 (402)
Q Consensus 198 -~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~ 273 (402)
-..+.. -++. ++.|+. -..+.+||..++.-... +.........+.+ ++.+++.|+.+ ..+.
T Consensus 145 ~v~~~~~~~~~~-l~s~s~------d~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~sg~~d------~~v~ 209 (340)
T 1got_B 145 YLSCCRFLDDNQ-IVTSSG------DTTCALWDIETGQQTTT--FTGHTGDVMSLSLAPDTRLFVSGACD------ASAK 209 (340)
T ss_dssp CEEEEEEEETTE-EEEEET------TSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT------SCEE
T ss_pred cEEEEEECCCCc-EEEEEC------CCcEEEEECCCCcEEEE--EcCCCCceEEEEECCCCCEEEEEeCC------CcEE
Confidence 112222 2455 444543 35688999988764322 1111112222222 67777777754 3688
Q ss_pred EEeCCCCCeeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEE-EEeCCEE
Q 040145 274 VYDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAV-NACDCRV 350 (402)
Q Consensus 274 ~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~-~~~~~~i 350 (402)
.||+.++.-...-.... ... .++.+ ++.+++.|+. ...+.+||..+..-...- ..+.......++ ...++++
T Consensus 210 ~wd~~~~~~~~~~~~h~-~~v-~~v~~~p~~~~l~s~s~-d~~v~iwd~~~~~~~~~~--~~~~~~~~v~~~~~s~~g~~ 284 (340)
T 1got_B 210 LWDVREGMCRQTFTGHE-SDI-NAICFFPNGNAFATGSD-DATCRLFDLRADQELMTY--SHDNIICGITSVSFSKSGRL 284 (340)
T ss_dssp EEETTTCSEEEEECCCS-SCE-EEEEECTTSSEEEEEET-TSCEEEEETTTTEEEEEE--CCTTCCSCEEEEEECTTSSE
T ss_pred EEECCCCeeEEEEcCCc-CCE-EEEEEcCCCCEEEEEcC-CCcEEEEECCCCcEEEEE--ccCCcccceEEEEECCCCCE
Confidence 99987764322111011 111 12222 6777777775 457899999876432211 111110111122 2357788
Q ss_pred EEEecCcee
Q 040145 351 YVVGRNLHV 359 (402)
Q Consensus 351 ~v~GG~~~~ 359 (402)
++.|+.+..
T Consensus 285 l~~g~~d~~ 293 (340)
T 1got_B 285 LLAGYDDFN 293 (340)
T ss_dssp EEEEETTSE
T ss_pred EEEECCCCe
Confidence 888876544
No 105
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=96.74 E-value=0.16 Score=46.22 Aligned_cols=147 Identities=14% Similarity=0.031 Sum_probs=74.0
Q ss_pred EEEEEeCccCCCCCCCceEEEEECCCCc------eeecCCCccc---ccceEEEEE-----CCEE-EEEcCCCCCCCCCC
Q 040145 158 TLFVCGGMVSDVDCPLDLVLKYEMQKNR------WTVMNKMITA---RSFFASGVI-----GGMI-YVAGGSSADLFELD 222 (402)
Q Consensus 158 ~i~v~GG~~~~~~~~~~~~~~~d~~t~~------W~~~~~~~~~---r~~~~~~~~-----~~~i-yv~GG~~~~~~~~~ 222 (402)
.+++.|+.+ ..+.+||..++. +..+...... ..-.++... ++.. ++.|+. ..
T Consensus 82 ~~l~s~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~------dg 148 (397)
T 1sq9_A 82 CLVATTSFS-------GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV------KG 148 (397)
T ss_dssp EEEEEEETT-------SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEET------TS
T ss_pred cEEEEEcCC-------CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeC------CC
Confidence 777777752 268899988776 6655443211 222233333 3555 666665 34
Q ss_pred eeEEEcCCC------Cc---EEEcCCC-------CCCCcceeEE-EE-CCEEEEEcccccCCccCCcEEEEeCCCCCeee
Q 040145 223 SAEVLDPVK------GN---WRTIASM-------GTNMASYDAA-VL-DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES 284 (402)
Q Consensus 223 ~~~~yd~~t------~~---W~~~~~~-------~~~~~~~~~~-~~-~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~ 284 (402)
.+.+||..+ .. |.....+ .........+ .. ++ +++.|+.+ ..+..||+.+.+-..
T Consensus 149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d------g~i~i~d~~~~~~~~ 221 (397)
T 1sq9_A 149 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN------GTVQISELSTLRPLY 221 (397)
T ss_dssp CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT------SEEEEEETTTTEEEE
T ss_pred cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC------CcEEEEECCCCceeE
Confidence 577787766 22 1110011 0011112222 22 56 66666643 368999998764322
Q ss_pred ccccc--c--CCCceeEEEE--CCEEEEEeccCC--cEEEEEeCCCCc
Q 040145 285 MAVGL--R--EGWTGSSVVV--YEHLFVVSELER--MKLKVYDPSTDS 324 (402)
Q Consensus 285 ~~~~~--~--~~~~~~~~~~--~~~l~~~gg~~~--~~~~~yd~~~~~ 324 (402)
.-... . ....-..+.+ ++.++++|+.+. ..+.+||..+.+
T Consensus 222 ~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~ 269 (397)
T 1sq9_A 222 NFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE 269 (397)
T ss_dssp EEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred EEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc
Confidence 11110 0 0111112233 577777766531 689999998764
No 106
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.74 E-value=0.11 Score=52.52 Aligned_cols=206 Identities=9% Similarity=-0.041 Sum_probs=101.2
Q ss_pred eEEEeecCCCcEEe-CCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccc
Q 040145 120 QWQVLDLTHYCWHT-IPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSF 198 (402)
Q Consensus 120 ~~~~~d~~~~~W~~-l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~ 198 (402)
.+.+||..+.+... +.... ....++....++..+++|+.+ ..+.+||..+++....-.. ....-
T Consensus 36 ~v~iwd~~~~~~~~~~~~~~-------~~v~~~~~s~~~~~l~~~~~d-------g~i~vw~~~~~~~~~~~~~-~~~~v 100 (814)
T 3mkq_A 36 RVEIWNYETQVEVRSIQVTE-------TPVRAGKFIARKNWIIVGSDD-------FRIRVFNYNTGEKVVDFEA-HPDYI 100 (814)
T ss_dssp EEEEEETTTTEEEEEEECCS-------SCEEEEEEEGGGTEEEEEETT-------SEEEEEETTTCCEEEEEEC-CSSCE
T ss_pred EEEEEECCCCceEEEEecCC-------CcEEEEEEeCCCCEEEEEeCC-------CeEEEEECCCCcEEEEEec-CCCCE
Confidence 47788887765432 22111 223344444466677777652 3799999988865332110 11111
Q ss_pred eEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCC-cEEEcCCCCCCCcceeE-EEE--CCEEEEEcccccCCccCCcEE
Q 040145 199 FASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKG-NWRTIASMGTNMASYDA-AVL--DGKLLVTEGWLWPFFVSPRGQ 273 (402)
Q Consensus 199 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~~~~~~~~~~-~~~--~g~ly~~gG~~~~~~~~~~~~ 273 (402)
.+++.. ++..++.|+. ...+.+||..++ ..... +......... +.. ++.+++.|+.+ ..+.
T Consensus 101 ~~~~~s~~~~~l~~~~~------dg~i~vw~~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~~~~~d------g~v~ 166 (814)
T 3mkq_A 101 RSIAVHPTKPYVLSGSD------DLTVKLWNWENNWALEQT--FEGHEHFVMCVAFNPKDPSTFASGCLD------RTVK 166 (814)
T ss_dssp EEEEECSSSSEEEEEET------TSEEEEEEGGGTSEEEEE--EECCSSCEEEEEEETTEEEEEEEEETT------SEEE
T ss_pred EEEEEeCCCCEEEEEcC------CCEEEEEECCCCceEEEE--EcCCCCcEEEEEEEcCCCCEEEEEeCC------CeEE
Confidence 222322 4555556654 356888998765 22221 1111111222 222 45677776653 3688
Q ss_pred EEeCCCCCeeeccccccCCCceeEEE-E--CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEE
Q 040145 274 VYDPSTDNWESMAVGLREGWTGSSVV-V--YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRV 350 (402)
Q Consensus 274 ~yd~~~~~W~~~~~~~~~~~~~~~~~-~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i 350 (402)
.||+.+..-...-...........+. - ++..+++|+. ...+.+||..+.+-...- ... ...........++.+
T Consensus 167 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~--~~~-~~~v~~~~~~~~~~~ 242 (814)
T 3mkq_A 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD-DLTIKIWDYQTKSCVATL--EGH-MSNVSFAVFHPTLPI 242 (814)
T ss_dssp EEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT-TSEEEEEETTTTEEEEEE--ECC-SSCEEEEEECSSSSE
T ss_pred EEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC-CCEEEEEECCCCcEEEEE--cCC-CCCEEEEEEcCCCCE
Confidence 99987654322111111111111222 2 6777777665 558999998776532211 111 001111222346667
Q ss_pred EEEecCce
Q 040145 351 YVVGRNLH 358 (402)
Q Consensus 351 ~v~GG~~~ 358 (402)
++.|+.++
T Consensus 243 l~~~~~dg 250 (814)
T 3mkq_A 243 IISGSEDG 250 (814)
T ss_dssp EEEEETTS
T ss_pred EEEEeCCC
Confidence 77777543
No 107
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=96.73 E-value=0.0076 Score=54.88 Aligned_cols=149 Identities=14% Similarity=0.018 Sum_probs=76.1
Q ss_pred cCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce-EEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCC
Q 040145 155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF-ASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKG 232 (402)
Q Consensus 155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 232 (402)
.++.+++.|+.+ ..+.+||..++.|+.+..+....... ++... ++++++.|+. -..+.+||..++
T Consensus 21 ~~g~~l~~~~~d-------~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~------d~~v~vwd~~~~ 87 (377)
T 3dwl_C 21 SQRTEFVTTTAT-------NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQ------DRNAYVYEKRPD 87 (377)
T ss_dssp SSSSEEECCCSS-------SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEET------TSSEEEC-----
T ss_pred CCCCEEEEecCC-------CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeC------CCeEEEEEcCCC
Confidence 366677777652 26888999988887766655333322 33333 4566677765 346889998887
Q ss_pred c-EEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCC-eeecccccc-CCCceeEEEE--CCEEE
Q 040145 233 N-WRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDN-WESMAVGLR-EGWTGSSVVV--YEHLF 305 (402)
Q Consensus 233 ~-W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~-W~~~~~~~~-~~~~~~~~~~--~~~l~ 305 (402)
. |.....+.........+.+ ++++++.|+.+ ..+..||+.+++ |..+..... ....-..+.+ ++.++
T Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 161 (377)
T 3dwl_C 88 GTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGA------RVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLL 161 (377)
T ss_dssp -CCCCEEECCCCSSCEEEEECCTTSSCCEEEESS------SCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEE
T ss_pred CceeeeeEecccCCceEEEEECCCCCEEEEEecC------CeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEE
Confidence 6 4433222222222223333 56666666643 368889988764 443332111 1111112233 56777
Q ss_pred EEeccCCcEEEEEeCCCC
Q 040145 306 VVSELERMKLKVYDPSTD 323 (402)
Q Consensus 306 ~~gg~~~~~~~~yd~~~~ 323 (402)
+.|+. ...+.+||..+.
T Consensus 162 ~~~~~-d~~i~iwd~~~~ 178 (377)
T 3dwl_C 162 AAGCA-DRKAYVLSAYVR 178 (377)
T ss_dssp EEEES-SSCEEEEEECCS
T ss_pred EEEeC-CCEEEEEEEEec
Confidence 77765 456888887543
No 108
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.19 Score=44.81 Aligned_cols=219 Identities=11% Similarity=0.014 Sum_probs=102.4
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCc----eeecCCCc--
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNR----WTVMNKMI-- 193 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~----W~~~~~~~-- 193 (402)
.+.+||..+.+....-... .....+.+..++..++.++.+.. .....+.+||..+.. +......+
T Consensus 97 ~i~iwd~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~~~~--~~~g~i~~~d~~~~~~~~~~~~~~~~~~~ 167 (369)
T 3zwl_B 97 SIKLWDVSNGQCVATWKSP-------VPVKRVEFSPCGNYFLAILDNVM--KNPGSINIYEIERDSATHELTKVSEEPIH 167 (369)
T ss_dssp EEEEEETTTCCEEEEEECS-------SCEEEEEECTTSSEEEEEECCBT--TBCCEEEEEEEEECTTTCCEEEECSSCSE
T ss_pred eEEEEECCCCcEEEEeecC-------CCeEEEEEccCCCEEEEecCCcc--CCCCEEEEEEecCCccceeecccccceee
Confidence 4778888777643322222 22334444446666666554211 123478888876653 11111111
Q ss_pred ---cccc--ceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCC-CcEEEcCCCCCCCcceeEEEE--CCEEEEEcccc
Q 040145 194 ---TARS--FFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVK-GNWRTIASMGTNMASYDAAVL--DGKLLVTEGWL 263 (402)
Q Consensus 194 ---~~r~--~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t-~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~ 263 (402)
.... ....... +++.+++|+. ...+.+||..+ ..-... +.........+.+ ++.+++.++.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d 239 (369)
T 3zwl_B 168 KIITHEGLDAATVAGWSTKGKYIIAGHK------DGKISKYDVSNNYEYVDS--IDLHEKSISDMQFSPDLTYFITSSRD 239 (369)
T ss_dssp EEECCTTCCCEEEEEECGGGCEEEEEET------TSEEEEEETTTTTEEEEE--EECCSSCEEEEEECTTSSEEEEEETT
T ss_pred eccCCcCccceeEEEEcCCCCEEEEEcC------CCEEEEEECCCCcEeEEE--EecCCCceeEEEECCCCCEEEEecCC
Confidence 0010 2222222 4556666664 45689999987 332211 1111112222222 66666666543
Q ss_pred cCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCc-------------EEEEEeCCCCceeecCC
Q 040145 264 WPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERM-------------KLKVYDPSTDSWETIEG 330 (402)
Q Consensus 264 ~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~-------------~~~~yd~~~~~W~~~~~ 330 (402)
..+.+||..+.+-...-. ...........-++..+++|+.+.. .+..||..+.+=...
T Consensus 240 ------~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-- 310 (369)
T 3zwl_B 240 ------TNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGR-- 310 (369)
T ss_dssp ------SEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEE--
T ss_pred ------ceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhh--
Confidence 368899998765432221 1111111112235555656554321 688888876542221
Q ss_pred CCCCccccCCeEEE-EeCCEEEEEecCceeeeEEEEecc
Q 040145 331 PPLPEQICKPFAVN-ACDCRVYVVGRNLHVAVGHITRLS 368 (402)
Q Consensus 331 ~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~~~~~v~~~~ 368 (402)
+......-.++. ..++++++.|+.+.. ..+|.++
T Consensus 311 --~~~~~~~v~~~~~s~~~~~l~s~~~dg~--v~iw~~~ 345 (369)
T 3zwl_B 311 --VQGHFGPLNTVAISPQGTSYASGGEDGF--IRLHHFE 345 (369)
T ss_dssp --EECCSSCEEEEEECTTSSEEEEEETTSE--EEEEEEC
T ss_pred --eecccCcEEEEEECCCCCEEEEEcCCCe--EEEEECc
Confidence 111001111222 347788888876544 3344443
No 109
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=96.71 E-value=0.089 Score=47.83 Aligned_cols=142 Identities=9% Similarity=-0.011 Sum_probs=78.8
Q ss_pred EEEEEeCccCCCCCCCceEEEEECCCCceeecCCC-cccccceEEEEEC--CEEEEEcCCCCCCCCCCeeEEEcCCCCcE
Q 040145 158 TLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKM-ITARSFFASGVIG--GMIYVAGGSSADLFELDSAEVLDPVKGNW 234 (402)
Q Consensus 158 ~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~-~~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 234 (402)
.+++.|+.+ ..+.+||..+++....-.. .....-.++.... +.+++.|+. ...+.+||..+...
T Consensus 87 ~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~ 153 (383)
T 3ei3_B 87 TTVAVGSKG-------GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSI------RGATTLRDFSGSVI 153 (383)
T ss_dssp TEEEEEEBT-------SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEET------TTEEEEEETTSCEE
T ss_pred CEEEEEcCC-------CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeC------CCEEEEEECCCCce
Confidence 567777652 2689999998876554332 1222223444443 466677765 45688999988766
Q ss_pred EEcCCCCCCCcceeEEE--ECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CCE-EEEEec
Q 040145 235 RTIASMGTNMASYDAAV--LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEH-LFVVSE 309 (402)
Q Consensus 235 ~~~~~~~~~~~~~~~~~--~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~-l~~~gg 309 (402)
..+............+. -++.+++.|+.+ ..+..||+....-..+.. ..... ..+.+ ++. +++.|+
T Consensus 154 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~--h~~~v-~~~~~~~~~~~~l~s~~ 224 (383)
T 3ei3_B 154 QVFAKTDSWDYWYCCVDVSVSRQMLATGDST------GRLLLLGLDGHEIFKEKL--HKAKV-THAEFNPRCDWLMATSS 224 (383)
T ss_dssp EEEECCCCSSCCEEEEEEETTTTEEEEEETT------SEEEEEETTSCEEEEEEC--SSSCE-EEEEECSSCTTEEEEEE
T ss_pred EEEeccCCCCCCeEEEEECCCCCEEEEECCC------CCEEEEECCCCEEEEecc--CCCcE-EEEEECCCCCCEEEEEe
Confidence 65543332222222222 266777777653 378899985433222221 11111 12223 444 666666
Q ss_pred cCCcEEEEEeCCC
Q 040145 310 LERMKLKVYDPST 322 (402)
Q Consensus 310 ~~~~~~~~yd~~~ 322 (402)
. ...+.+||..+
T Consensus 225 ~-d~~i~iwd~~~ 236 (383)
T 3ei3_B 225 V-DATVKLWDLRN 236 (383)
T ss_dssp T-TSEEEEEEGGG
T ss_pred C-CCEEEEEeCCC
Confidence 5 45799999876
No 110
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.69 E-value=0.3 Score=43.32 Aligned_cols=212 Identities=11% Similarity=0.085 Sum_probs=114.4
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC----Cceee-cC-CCc
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK----NRWTV-MN-KMI 193 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t----~~W~~-~~-~~~ 193 (402)
.+..+|+.+.....+.+.. ..-.+.+.-..++.||+.... ...++++|+.+ ..-+. ++ .+.
T Consensus 11 ~I~~i~~~~~~~~~~~~~~------~~p~g~~~d~~~~~ly~~D~~-------~~~I~~~~~~g~~~~~~~~~~~~~~~~ 77 (316)
T 1ijq_A 11 EVRKMTLDRSEYTSLIPNL------RNVVALDTEVASNRIYWSDLS-------QRMICSTQLDRAHGVSSYDTVISRDIQ 77 (316)
T ss_dssp SEEEEETTSCCCEEEECSC------SSEEEEEEETTTTEEEEEETT-------TTEEEEEEC--------CEEEECSSCS
T ss_pred eEEEEECCCcceEehhcCC------CceEEEEEEeCCCEEEEEECC-------CCcEEEEECCCCCCCcccEEEEeCCCC
Confidence 3677888877665542211 022344443346799998643 34799999876 22222 21 111
Q ss_pred ccccceEEEE--ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcC--CCCCCCcceeEEEE--CCEEEEEcccccCCc
Q 040145 194 TARSFFASGV--IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIA--SMGTNMASYDAAVL--DGKLLVTEGWLWPFF 267 (402)
Q Consensus 194 ~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~ 267 (402)
...++++ .++.||+.-.. ...++++|+....-+.+. .+..+ ...++- ++.||+.....
T Consensus 78 ---~p~glavd~~~~~ly~~d~~------~~~I~~~~~~g~~~~~~~~~~~~~P---~~iavdp~~g~ly~~d~~~---- 141 (316)
T 1ijq_A 78 ---APDGLAVDWIHSNIYWTDSV------LGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWGT---- 141 (316)
T ss_dssp ---CCCEEEEETTTTEEEEEETT------TTEEEEEETTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEECSS----
T ss_pred ---CcCEEEEeecCCeEEEEECC------CCEEEEEeCCCCceEEEEECCCCCc---ceEEeCCCCCEEEEEccCC----
Confidence 2234444 47899998543 567889998765433332 22222 223332 68899875321
Q ss_pred cCCcEEEEeCCCCCeeeccccccCCCceeEEE--ECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE
Q 040145 268 VSPRGQVYDPSTDNWESMAVGLREGWTGSSVV--VYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA 345 (402)
Q Consensus 268 ~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~--~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~ 345 (402)
...++++++....-..+.. ....+....+. -+++||+.... ...|+++|++...-..+.. .........++++
T Consensus 142 -~~~I~~~~~dG~~~~~~~~-~~~~~P~gla~d~~~~~lY~~D~~-~~~I~~~d~dg~~~~~~~~--~~~~~~~P~giav 216 (316)
T 1ijq_A 142 -PAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGRLYWVDSK-LHSISSIDVNGGNRKTILE--DEKRLAHPFSLAV 216 (316)
T ss_dssp -SCEEEEEETTSCCEEEEEC-SSCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTSCSCEEEEE--CTTTTSSEEEEEE
T ss_pred -CCeEEEEcCCCCCeEEEEE-CCCCCceEEEEeccCCEEEEEECC-CCeEEEEecCCCceEEEee--cCCccCCcEEEEE
Confidence 2478999986543333321 11111112222 26889988543 6789999997543333321 1111234567777
Q ss_pred eCCEEEEEecCceeeeEEEEeccc
Q 040145 346 CDCRVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 346 ~~~~i~v~GG~~~~~~~~v~~~~~ 369 (402)
.++.||+.--..+ .|..+++
T Consensus 217 ~~~~ly~~d~~~~----~V~~~~~ 236 (316)
T 1ijq_A 217 FEDKVFWTDIINE----AIFSANR 236 (316)
T ss_dssp ETTEEEEEETTTT----EEEEEET
T ss_pred ECCEEEEEECCCC----eEEEEeC
Confidence 8899999775333 2555554
No 111
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=96.69 E-value=0.25 Score=43.62 Aligned_cols=140 Identities=16% Similarity=0.119 Sum_probs=68.5
Q ss_pred ceEEEEECC--CCceeecCCCcccccceEEEEE-CC-EEEEEcCCCCCCCCCCeeEEEcCCCCc-EEEcCCCCCCCccee
Q 040145 174 DLVLKYEMQ--KNRWTVMNKMITARSFFASGVI-GG-MIYVAGGSSADLFELDSAEVLDPVKGN-WRTIASMGTNMASYD 248 (402)
Q Consensus 174 ~~~~~~d~~--t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~~~~~~ 248 (402)
..+.+|+.. +++++.+..++.......++.. ++ .+|+.+.. ...+.+||..++. ...+...........
T Consensus 60 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 133 (343)
T 1ri6_A 60 FRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYN------AGNVSVTRLEDGLPVGVVDVVEGLDGCHS 133 (343)
T ss_dssp TEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETT------TTEEEEEEEETTEEEEEEEEECCCTTBCC
T ss_pred CeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecC------CCeEEEEECCCCccccccccccCCCCceE
Confidence 367787776 7777765544333222333333 33 56666543 3457888874222 222222222111222
Q ss_pred EEEE-CC-EEEEEcccccCCccCCcEEEEeCCC-CCeeecc--c-cccCCCceeEEEE--CCE-EEEEeccCCcEEEEEe
Q 040145 249 AAVL-DG-KLLVTEGWLWPFFVSPRGQVYDPST-DNWESMA--V-GLREGWTGSSVVV--YEH-LFVVSELERMKLKVYD 319 (402)
Q Consensus 249 ~~~~-~g-~ly~~gG~~~~~~~~~~~~~yd~~~-~~W~~~~--~-~~~~~~~~~~~~~--~~~-l~~~gg~~~~~~~~yd 319 (402)
.+.. +| .+|+.+... ..+.+||+.+ ++...+. . ..+.......+.+ +++ +|+.+. ....+.+||
T Consensus 134 ~~~s~dg~~l~~~~~~~------~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~-~~~~i~~~~ 206 (343)
T 1ri6_A 134 ANISPDNRTLWVPALKQ------DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE-LNSSVDVWE 206 (343)
T ss_dssp CEECTTSSEEEEEEGGG------TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET-TTTEEEEEE
T ss_pred EEECCCCCEEEEecCCC------CEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC-CCCEEEEEE
Confidence 2222 45 466654221 3689999887 6665432 1 1111111112233 454 665543 356788888
Q ss_pred CC--CCcee
Q 040145 320 PS--TDSWE 326 (402)
Q Consensus 320 ~~--~~~W~ 326 (402)
.. +..+.
T Consensus 207 ~~~~~g~~~ 215 (343)
T 1ri6_A 207 LKDPHGNIE 215 (343)
T ss_dssp SSCTTSCCE
T ss_pred ecCCCCcEE
Confidence 84 34443
No 112
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.69 E-value=0.3 Score=43.05 Aligned_cols=220 Identities=11% Similarity=-0.005 Sum_probs=113.1
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK 183 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t 183 (402)
++.||+... ....+++||+.... ......+ ..-...++..++.+|+..... ....+++||+.+
T Consensus 42 ~g~lyv~d~----~~~~I~~~d~~g~~-~~~~~~~-------~~p~gia~~~dG~l~vad~~~-----~~~~v~~~d~~~ 104 (306)
T 2p4o_A 42 DGTIFVTNH----EVGEIVSITPDGNQ-QIHATVE-------GKVSGLAFTSNGDLVATGWNA-----DSIPVVSLVKSD 104 (306)
T ss_dssp TSCEEEEET----TTTEEEEECTTCCE-EEEEECS-------SEEEEEEECTTSCEEEEEECT-----TSCEEEEEECTT
T ss_pred CCCEEEEeC----CCCeEEEECCCCce-EEEEeCC-------CCceeEEEcCCCcEEEEeccC-----CcceEEEEcCCC
Confidence 456777752 23357889887643 2221122 112333443467788875321 112588999988
Q ss_pred CceeecCCCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCc---EEEcCC----CC-CCCcceeEEEE-C
Q 040145 184 NRWTVMNKMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGN---WRTIAS----MG-TNMASYDAAVL-D 253 (402)
Q Consensus 184 ~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~---W~~~~~----~~-~~~~~~~~~~~-~ 253 (402)
++.+.+...+..+.....+. .++.+|+.-.. ...++++|+.+.. |..-+. .+ ........... +
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~------~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg 178 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPLSDTQYLTADSY------RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG 178 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEESSSSEEEEEETT------TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET
T ss_pred CeEEEEEeCCCccccCcccccCCCcEEEEECC------CCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCC
Confidence 88776554443333333333 35577776432 4578999987642 221111 11 11112222233 4
Q ss_pred CEEEEEcccccCCccCCcEEEEeCCC-CCeeecccccc-CCCceeEEEECCEEEEEeccCCcEEEEEeCCCCceeecCCC
Q 040145 254 GKLLVTEGWLWPFFVSPRGQVYDPST-DNWESMAVGLR-EGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGP 331 (402)
Q Consensus 254 g~ly~~gG~~~~~~~~~~~~~yd~~~-~~W~~~~~~~~-~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~ 331 (402)
+.||+.-.. .+.+.+||+.. ++......... ..-.+.++--+|++|+... ..+.|.+||++ .+...+...
T Consensus 179 ~~lyv~d~~------~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~-~~~~V~~~~~~-G~~~~~~~~ 250 (306)
T 2p4o_A 179 NFLYVSNTE------KMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATH-IYNSVVRIAPD-RSTTIIAQA 250 (306)
T ss_dssp TEEEEEETT------TTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECB-TTCCEEEECTT-CCEEEEECG
T ss_pred CEEEEEeCC------CCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeC-CCCeEEEECCC-CCEEEEeec
Confidence 578886532 35799999865 33221111000 1112223334788887743 35689999997 444433322
Q ss_pred CCCccccCCeEEEEe-----CCEEEEEecC
Q 040145 332 PLPEQICKPFAVNAC-----DCRVYVVGRN 356 (402)
Q Consensus 332 ~~p~~~~~~~~~~~~-----~~~i~v~GG~ 356 (402)
+.+ .....+++.- ++.|||....
T Consensus 251 ~~~--~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 251 EQG--VIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp GGT--CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ccc--cCCceEEEEecccCCCCEEEEECCC
Confidence 222 1333455443 2689997753
No 113
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=96.68 E-value=0.23 Score=45.11 Aligned_cols=109 Identities=13% Similarity=0.019 Sum_probs=56.4
Q ss_pred CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEc-CCCCCC---CcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCC
Q 040145 205 GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTI-ASMGTN---MASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPS 278 (402)
Q Consensus 205 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~-~~~~~~---~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~ 278 (402)
++ +++.|+. ...+.+||..+..-... ...... ......+.+ ++.+++.|+.++. ...+.+||+.
T Consensus 197 ~~-~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~---~g~i~i~d~~ 266 (397)
T 1sq9_A 197 RG-LIATGFN------NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS---FGCITLYETE 266 (397)
T ss_dssp TS-EEEEECT------TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT---EEEEEEEETT
T ss_pred Cc-eEEEEeC------CCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCC---CceEEEEECC
Confidence 45 6666664 45689999987754322 210001 122223333 6677777764310 0268899988
Q ss_pred CCCeee-ccccc-c---------CCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCc
Q 040145 279 TDNWES-MAVGL-R---------EGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 279 ~~~W~~-~~~~~-~---------~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
+.+-.. +..+. + ....-..+.+ ++.+++.|+. ...+.+||..+.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~ 324 (397)
T 1sq9_A 267 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW-DGKLRFWDVKTKE 324 (397)
T ss_dssp TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET-TSEEEEEETTTTE
T ss_pred CCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC-CCeEEEEEcCCCc
Confidence 764221 11100 0 1111112333 5677766665 5689999998764
No 114
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.37 Score=43.92 Aligned_cols=154 Identities=12% Similarity=0.086 Sum_probs=75.5
Q ss_pred ceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEE
Q 040145 148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEV 226 (402)
Q Consensus 148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~ 226 (402)
..++.+..++.+++.|+.+ ..+.+||.....-..+..- ...-.++... ++..++.++. ...+.+
T Consensus 111 v~~~~~s~~~~~l~~~~~d-------g~i~i~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~------d~~i~i 175 (425)
T 1r5m_A 111 VTCLAWSHDGNSIVTGVEN-------GELRLWNKTGALLNVLNFH--RAPIVSVKWNKDGTHIISMDV------ENVTIL 175 (425)
T ss_dssp EEEEEECTTSSEEEEEETT-------SCEEEEETTSCEEEEECCC--CSCEEEEEECTTSSEEEEEET------TCCEEE
T ss_pred eEEEEEcCCCCEEEEEeCC-------CeEEEEeCCCCeeeeccCC--CccEEEEEECCCCCEEEEEec------CCeEEE
Confidence 3444554567777777652 2688899433333333211 1111223332 4555555554 345788
Q ss_pred EcCCCCcEEEcCCCCCCC--------------cceeEEEE-CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccC
Q 040145 227 LDPVKGNWRTIASMGTNM--------------ASYDAAVL-DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLRE 291 (402)
Q Consensus 227 yd~~t~~W~~~~~~~~~~--------------~~~~~~~~-~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~ 291 (402)
||..++.-...-...... ........ ++. +++|+.+ ..+..||+.+++-...-.....
T Consensus 176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------g~i~~~d~~~~~~~~~~~~~~~ 248 (425)
T 1r5m_A 176 WNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPK------GAIFVYQITEKTPTGKLIGHHG 248 (425)
T ss_dssp EETTTTEEEEEECCC---------------CCCBSCCEEEETTE-EEEECGG------GCEEEEETTCSSCSEEECCCSS
T ss_pred EECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCC------CeEEEEEcCCCceeeeeccCCC
Confidence 998877643321111111 01122222 444 5555543 3689999987643221111111
Q ss_pred CCceeEEEECCEEEEEeccCCcEEEEEeCCCCc
Q 040145 292 GWTGSSVVVYEHLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 292 ~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
.-......-++.+++.|+. ...+.+||..+..
T Consensus 249 ~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~ 280 (425)
T 1r5m_A 249 PISVLEFNDTNKLLLSASD-DGTLRIWHGGNGN 280 (425)
T ss_dssp CEEEEEEETTTTEEEEEET-TSCEEEECSSSBS
T ss_pred ceEEEEECCCCCEEEEEcC-CCEEEEEECCCCc
Confidence 1111112236666666665 4578999987654
No 115
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=96.64 E-value=0.11 Score=50.10 Aligned_cols=148 Identities=11% Similarity=0.049 Sum_probs=73.7
Q ss_pred ceEEEEECCCCceee-cCCCc----------ccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCC
Q 040145 174 DLVLKYEMQKNRWTV-MNKMI----------TARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMG 241 (402)
Q Consensus 174 ~~~~~~d~~t~~W~~-~~~~~----------~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 241 (402)
+.+.++|..|.+-.. ++... .++........ +..+|+.... ...+.++|..+..-..+..++
T Consensus 248 ~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~------~g~i~vvd~~~~~~l~~~~i~ 321 (543)
T 1nir_A 248 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE------TGKVLLVNYKDIDNLTVTSIG 321 (543)
T ss_dssp SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT------TTEEEEEECTTSSSCEEEEEE
T ss_pred CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC------CCeEEEEEecCCCcceeEEec
Confidence 378899998875332 22111 11211112222 3456655432 467888888764311111111
Q ss_pred CCCcceeEEEE-CCEEEEEcccccCCccCCcEEEEeCCCCCeeec-cc-cccCCCceeEEEE--CCEEEEEeccCCcEEE
Q 040145 242 TNMASYDAAVL-DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESM-AV-GLREGWTGSSVVV--YEHLFVVSELERMKLK 316 (402)
Q Consensus 242 ~~~~~~~~~~~-~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~-~~-~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~ 316 (402)
..+.-+..+.. +|+.+++++.. .+.+.++|..+++-... +. ..|....+..... ++.+|+.+..+...|.
T Consensus 322 ~~~~~~~~~~spdg~~l~va~~~-----~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~ 396 (543)
T 1nir_A 322 AAPFLHDGGWDSSHRYFMTAANN-----SNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSIS 396 (543)
T ss_dssp CCSSCCCEEECTTSCEEEEEEGG-----GTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEE
T ss_pred cCcCccCceECCCCCEEEEEecC-----CCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEE
Confidence 22222233332 56643333321 24788899998864432 21 1222222222233 3778877654456888
Q ss_pred EEeCCCC-----ceeecCCCC
Q 040145 317 VYDPSTD-----SWETIEGPP 332 (402)
Q Consensus 317 ~yd~~~~-----~W~~~~~~~ 332 (402)
++|.++. .|+.+..++
T Consensus 397 v~d~~~~~~~~~~~~~v~~l~ 417 (543)
T 1nir_A 397 LIGTDPKNHPQYAWKKVAELQ 417 (543)
T ss_dssp EEECCTTTCTTTBTSEEEEEE
T ss_pred EEEeCCCCCchhcCeEEEEEE
Confidence 9988762 388776433
No 116
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.63 E-value=0.71 Score=46.71 Aligned_cols=215 Identities=8% Similarity=0.122 Sum_probs=114.0
Q ss_pred EEEeecCCCcEEeCCCCCCCCC--CCCCCceEEEEccCCE-EEEEeCccCCCCCCCceEEEEECCCCceeecCC----Cc
Q 040145 121 WQVLDLTHYCWHTIPAMPCKDK--VCPHGFRCVSIPREGT-LFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNK----MI 193 (402)
Q Consensus 121 ~~~~d~~~~~W~~l~~~~~~~~--~~~~~~~~~~~~~~~~-i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~----~~ 193 (402)
+..||+.++++......+..+. .......+.....++. |++-. . ...+++||+.+++++.... ++
T Consensus 379 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt-~-------~~Gl~~~d~~~~~~~~~~~~~~~l~ 450 (795)
T 4a2l_A 379 LNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGT-H-------AGGLSILHRNSGQVENFNQRNSQLV 450 (795)
T ss_dssp EEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEE-T-------TTEEEEEETTTCCEEEECTTTSCCS
T ss_pred eEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEe-C-------cCceeEEeCCCCcEEEeecCCCCcC
Confidence 7789998888876643220000 0001122223323566 67632 1 1258999999998877643 11
Q ss_pred ccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCC--CCC--CcceeEEEE--CCEEEEEcccccCC
Q 040145 194 TARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASM--GTN--MASYDAAVL--DGKLLVTEGWLWPF 266 (402)
Q Consensus 194 ~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~--~~~--~~~~~~~~~--~g~ly~~gG~~~~~ 266 (402)
.. .-.++.. -++.|++... ..+.+||+.+++|+..... +.. ......... +|.|++...
T Consensus 451 ~~-~v~~i~~d~~g~lwigt~--------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~----- 516 (795)
T 4a2l_A 451 NE-NVYAILPDGEGNLWLGTL--------SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE----- 516 (795)
T ss_dssp CS-CEEEEEECSSSCEEEEES--------SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-----
T ss_pred CC-eeEEEEECCCCCEEEEec--------CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-----
Confidence 11 1122222 2467766542 3478999999999887533 111 111222222 577777432
Q ss_pred ccCCcEEEEeCCCCCeeeccc-----cccCCCceeEEE-ECCEEEEEeccCCcEEEEEeCCCCceeecCCC-CCCccccC
Q 040145 267 FVSPRGQVYDPSTDNWESMAV-----GLREGWTGSSVV-VYEHLFVVSELERMKLKVYDPSTDSWETIEGP-PLPEQICK 339 (402)
Q Consensus 267 ~~~~~~~~yd~~~~~W~~~~~-----~~~~~~~~~~~~-~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~-~~p~~~~~ 339 (402)
..+.+||+.++++ .+.. ..+.......+. -+|.|++... . .+.+||+++++++..... .+|.. .
T Consensus 517 ---~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~--~-Gl~~~d~~~~~~~~~~~~~gl~~~--~ 587 (795)
T 4a2l_A 517 ---EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR--E-GFYCFNEKDKQIKRYNTTNGLPNN--V 587 (795)
T ss_dssp ---SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES--S-CEEEEETTTTEEEEECGGGTCSCS--C
T ss_pred ---CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC--C-CceeECCCCCcEEEeCCCCCCchh--h
Confidence 2588999988877 4321 111111111122 2577876432 2 689999999988765421 24421 1
Q ss_pred CeEEEE-eCCEEEEEecCceeeeEEEEecccccc
Q 040145 340 PFAVNA-CDCRVYVVGRNLHVAVGHITRLSTSEK 372 (402)
Q Consensus 340 ~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~~~~ 372 (402)
..+++. .+|.|++.+.. -+..|+|..+
T Consensus 588 i~~i~~d~~g~lWi~t~~------Gl~~~~~~~~ 615 (795)
T 4a2l_A 588 VYGILEDSFGRLWLSTNR------GISCFNPETE 615 (795)
T ss_dssp EEEEEECTTSCEEEEETT------EEEEEETTTT
T ss_pred eEEEEECCCCCEEEEcCC------ceEEEcCCCC
Confidence 223333 35788887642 2566776544
No 117
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.35 Score=43.02 Aligned_cols=215 Identities=11% Similarity=0.096 Sum_probs=98.2
Q ss_pred EEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCC-----ceeecCCCccc
Q 040145 121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKN-----RWTVMNKMITA 195 (402)
Q Consensus 121 ~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~-----~W~~~~~~~~~ 195 (402)
+.+||........+..+.... ......++....++.+++.|+.+ ..+.+||..+. .+..+..+...
T Consensus 36 i~lw~~~~~~~~~~~~~~~~~--h~~~v~~v~~sp~~~~las~s~D-------~~v~iw~~~~~~~~~~~~~~~~~~~~h 106 (330)
T 2hes_X 36 IKLVSVKYDDFTLIDVLDETA--HKKAIRSVAWRPHTSLLAAGSFD-------STVSIWAKEESADRTFEMDLLAIIEGH 106 (330)
T ss_dssp EEEEECSSSCCEEEEEECTTC--CCSCEEEEEECTTSSEEEEEETT-------SCEEEEEC-------CCCEEEEEEC--
T ss_pred EEEEEecCCCeEEEEEEecCC--ccCCEEEEEECCCCCEEEEEeCC-------CcEEEEEcccCcCccccceeEEEEcCC
Confidence 677787765433222121000 01223444554567777887763 26888887532 12222111111
Q ss_pred cc-ceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCC--CcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccC
Q 040145 196 RS-FFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVK--GNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVS 269 (402)
Q Consensus 196 r~-~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t--~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~ 269 (402)
.. -.+++.. +++.++.|+. -..+.+||..+ ..++.+..+.........+.+ ++.+++.|+.+
T Consensus 107 ~~~V~~v~~sp~g~~las~s~------D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D------ 174 (330)
T 2hes_X 107 ENEVKGVAWSNDGYYLATCSR------DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD------ 174 (330)
T ss_dssp --CEEEEEECTTSCEEEEEET------TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETT------
T ss_pred CCcEEEEEECCCCCEEEEEeC------CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCC------
Confidence 11 1122222 4666677765 34578888843 234433323222222233333 56777777754
Q ss_pred CcEEEEeCCCCCeeeccccccCCCceeEEEE--C--CEEEEEeccCCcEEEEEeCCC------CceeecCCCCCCc-ccc
Q 040145 270 PRGQVYDPSTDNWESMAVGLREGWTGSSVVV--Y--EHLFVVSELERMKLKVYDPST------DSWETIEGPPLPE-QIC 338 (402)
Q Consensus 270 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~--~~l~~~gg~~~~~~~~yd~~~------~~W~~~~~~~~p~-~~~ 338 (402)
..+..||..++.|..+.........-..+.+ + +..++.|+. ...+.+||..+ ..|..+.. ++. ...
T Consensus 175 ~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-D~~v~iw~~~~~~~~~~~~~~~~~~--~~~~h~~ 251 (330)
T 2hes_X 175 DTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD-DSTVRVWKYMGDDEDDQQEWVCEAI--LPDVHKR 251 (330)
T ss_dssp SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET-TSCEEEEEEEEECTTSCEEEEEEEE--CCSCCSS
T ss_pred CeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC-CCeEEEEEecCCCccccceeEEeee--ccccccc
Confidence 3678888877767655431111111112233 2 345555555 34566666543 23554432 221 112
Q ss_pred CCeEEEEeCCEEEEEecCcee
Q 040145 339 KPFAVNACDCRVYVVGRNLHV 359 (402)
Q Consensus 339 ~~~~~~~~~~~i~v~GG~~~~ 359 (402)
.-.+++...+.+++.||.++.
T Consensus 252 ~v~~v~~s~~~~l~s~~~dg~ 272 (330)
T 2hes_X 252 QVYNVAWGFNGLIASVGADGV 272 (330)
T ss_dssp CEEEEEECTTSCEEEEETTSC
T ss_pred ceEEEEEcCCCEEEEEeCCCE
Confidence 222344444556666665543
No 118
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=96.62 E-value=0.093 Score=50.94 Aligned_cols=190 Identities=11% Similarity=0.002 Sum_probs=92.3
Q ss_pred ceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCce-eecCCCcccccceEEEEE-CCE-EEEEcCCCCCCCCCCee
Q 040145 148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRW-TVMNKMITARSFFASGVI-GGM-IYVAGGSSADLFELDSA 224 (402)
Q Consensus 148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W-~~~~~~~~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~ 224 (402)
...+.+..++..++.++.+.+ ....+++|| +++- ..+.. ....-.++... ++. +++.|+. ...+
T Consensus 119 v~~~~~s~~~~~l~~~~~~~~---~~~~v~~~d--~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~------d~~v 185 (615)
T 1pgu_A 119 ISDISWDFEGRRLCVVGEGRD---NFGVFISWD--SGNSLGEVSG--HSQRINACHLKQSRPMRSMTVGD------DGSV 185 (615)
T ss_dssp EEEEEECTTSSEEEEEECCSS---CSEEEEETT--TCCEEEECCS--CSSCEEEEEECSSSSCEEEEEET------TTEE
T ss_pred EEEEEEeCCCCEEEEeccCCC---CccEEEEEE--CCCcceeeec--CCccEEEEEECCCCCcEEEEEeC------CCcE
Confidence 344455456666666665322 245777787 3321 11211 11111222332 232 6666665 4578
Q ss_pred EEEcCCCCcEEEcCCCCCCCc---ceeEEEE--C-CEEEEEcccccCCccCCcEEEEeCCCCCeeecc-ccc-cCCCcee
Q 040145 225 EVLDPVKGNWRTIASMGTNMA---SYDAAVL--D-GKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMA-VGL-REGWTGS 296 (402)
Q Consensus 225 ~~yd~~t~~W~~~~~~~~~~~---~~~~~~~--~-g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~-~~~-~~~~~~~ 296 (402)
.+||..+.+-.. .+..... ....+.+ + +.+++.|+.+ ..+.+||+.+++-...- ... .....-.
T Consensus 186 ~vwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~v~ 257 (615)
T 1pgu_A 186 VFYQGPPFKFSA--SDRTHHKQGSFVRDVEFSPDSGEFVITVGSD------RKISCFDGKSGEFLKYIEDDQEPVQGGIF 257 (615)
T ss_dssp EEEETTTBEEEE--EECSSSCTTCCEEEEEECSTTCCEEEEEETT------CCEEEEETTTCCEEEECCBTTBCCCSCEE
T ss_pred EEEeCCCcceee--eecccCCCCceEEEEEECCCCCCEEEEEeCC------CeEEEEECCCCCEeEEecccccccCCceE
Confidence 899987755322 2222211 2223333 5 6777777653 36899999876643221 100 1111111
Q ss_pred EEEE-CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCcee
Q 040145 297 SVVV-YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHV 359 (402)
Q Consensus 297 ~~~~-~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~ 359 (402)
.+.+ ++..++.++. ...+.+||..+.+-...-............++...++..++.|+.+..
T Consensus 258 ~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 320 (615)
T 1pgu_A 258 ALSWLDSQKFATVGA-DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT 320 (615)
T ss_dssp EEEESSSSEEEEEET-TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSC
T ss_pred EEEEcCCCEEEEEcC-CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCC
Confidence 2222 7777777775 467999999876543322111000111222333346667777765443
No 119
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=96.61 E-value=0.55 Score=45.23 Aligned_cols=231 Identities=7% Similarity=-0.072 Sum_probs=110.0
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEEC--
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEM-- 181 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~-- 181 (402)
++.+|+.+.. ...+.++|..+.+-...-... . ..+..+....+..+|+.+.. +.+.+||.
T Consensus 148 ~~~~~vs~~~----d~~V~v~D~~t~~~~~~i~~g--~----~~~~v~~spdg~~l~v~~~d--------~~V~v~D~~~ 209 (543)
T 1nir_A 148 PNLFSVTLRD----AGQIALVDGDSKKIVKVIDTG--Y----AVHISRMSASGRYLLVIGRD--------ARIDMIDLWA 209 (543)
T ss_dssp GGEEEEEEGG----GTEEEEEETTTCCEEEEEECS--T----TEEEEEECTTSCEEEEEETT--------SEEEEEETTS
T ss_pred CCEEEEEEcC----CCeEEEEECCCceEEEEEecC--c----ccceEEECCCCCEEEEECCC--------CeEEEEECcC
Confidence 4567766533 234778899887643221111 1 12333333233456665431 47999999
Q ss_pred CCCceeecCCCcccccceEEEEE-----CC-EEEEEcCCCCCCCCCCeeEEEcCCCCcEEE-cCC--CCC------CCcc
Q 040145 182 QKNRWTVMNKMITARSFFASGVI-----GG-MIYVAGGSSADLFELDSAEVLDPVKGNWRT-IAS--MGT------NMAS 246 (402)
Q Consensus 182 ~t~~W~~~~~~~~~r~~~~~~~~-----~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~--~~~------~~~~ 246 (402)
.|++- +..++.......+++. ++ .+|+.... ...+.++|..+.+-.. ++. +.. +...
T Consensus 210 ~t~~~--~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~------~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~ 281 (543)
T 1nir_A 210 KEPTK--VAEIKIGIEARSVESSKFKGYEDRYTIAGAYW------PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR 281 (543)
T ss_dssp SSCEE--EEEEECCSEEEEEEECCSTTCTTTEEEEEEEE------SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC
T ss_pred CCCcE--EEEEecCCCcceEEeCCCcCCCCCEEEEEEcc------CCeEEEEeccccccceeecccCcccCccccccCCc
Confidence 66542 2233333333444443 44 45555422 4568889988765322 211 100 0001
Q ss_pred eeEEEE---CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCc--eeEEEECCEEEEEeccCCcEEEEEeCC
Q 040145 247 YDAAVL---DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWT--GSSVVVYEHLFVVSELERMKLKVYDPS 321 (402)
Q Consensus 247 ~~~~~~---~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~--~~~~~~~~~l~~~gg~~~~~~~~yd~~ 321 (402)
...+.. ++.+|+.... ...+..+|..+.+-..+.. .+.... .....-+|+.+++++...+.+.++|.+
T Consensus 282 v~~i~~s~~~~~~~vs~~~------~g~i~vvd~~~~~~l~~~~-i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~ 354 (543)
T 1nir_A 282 VAAIIASHEHPEFIVNVKE------TGKVLLVNYKDIDNLTVTS-IGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSK 354 (543)
T ss_dssp EEEEEECSSSSEEEEEETT------TTEEEEEECTTSSSCEEEE-EECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred eEEEEECCCCCEEEEEECC------CCeEEEEEecCCCcceeEE-eccCcCccCceECCCCCEEEEEecCCCeEEEEECC
Confidence 122222 3445554332 2478889987654222111 111111 112223566444555446789999999
Q ss_pred CCceeec-CCCCCCccccCCeEEEEe-CCEEEEEecCceeeeEEEEeccc
Q 040145 322 TDSWETI-EGPPLPEQICKPFAVNAC-DCRVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 322 ~~~W~~~-~~~~~p~~~~~~~~~~~~-~~~i~v~GG~~~~~~~~v~~~~~ 369 (402)
+.+-... ..-..|.. ......... ++.+|+.+.... ....++..++
T Consensus 355 tg~l~~~i~~g~~ph~-g~g~~~~~p~~g~~~~s~~~~d-~~V~v~d~~~ 402 (543)
T 1nir_A 355 DRRLSALVDVGKTPHP-GRGANFVHPKYGPVWSTSHLGD-GSISLIGTDP 402 (543)
T ss_dssp TTEEEEEEECSSSBCC-TTCEEEEETTTEEEEEEEBSSS-SEEEEEECCT
T ss_pred CCeEEEeeccCCCCCC-CCCcccCCCCCccEEEeccCCC-ceEEEEEeCC
Confidence 8864432 21122321 122233223 377888764221 1244555554
No 120
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=96.59 E-value=0.36 Score=42.78 Aligned_cols=192 Identities=16% Similarity=0.049 Sum_probs=100.5
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccc---ccceEEEE-E-CCEEEEEcCCCCC-----------CC
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITA---RSFFASGV-I-GGMIYVAGGSSAD-----------LF 219 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~---r~~~~~~~-~-~~~iyv~GG~~~~-----------~~ 219 (402)
++.||+.... ..+.+||+.++..+.+...... .....+++ - ++.||+.-..... ..
T Consensus 91 ~g~l~v~d~~--------~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~ 162 (322)
T 2fp8_A 91 NNQLYIVDCY--------YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSD 162 (322)
T ss_dssp TTEEEEEETT--------TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTC
T ss_pred CCcEEEEECC--------CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccC
Confidence 6889987432 2488999987765554321111 11223333 2 5788887432110 01
Q ss_pred CCCeeEEEcCCCCcEEEcC-CCCCCCcceeEEEE-CC-EEEEEcccccCCccCCcEEEEeCCCC---CeeeccccccCCC
Q 040145 220 ELDSAEVLDPVKGNWRTIA-SMGTNMASYDAAVL-DG-KLLVTEGWLWPFFVSPRGQVYDPSTD---NWESMAVGLREGW 293 (402)
Q Consensus 220 ~~~~~~~yd~~t~~W~~~~-~~~~~~~~~~~~~~-~g-~ly~~gG~~~~~~~~~~~~~yd~~~~---~W~~~~~~~~~~~ 293 (402)
....+++||+.++..+.+. .+..+ ...+.- +| .||+.-.. .+.+.+||+... ..+.+.. .+. -
T Consensus 163 ~~g~v~~~d~~~~~~~~~~~~~~~p---~gia~~~dg~~lyv~d~~------~~~I~~~~~~~~~~~~~~~~~~-~~g-P 231 (322)
T 2fp8_A 163 KTGRLIKYDPSTKETTLLLKELHVP---GGAEVSADSSFVLVAEFL------SHQIVKYWLEGPKKGTAEVLVK-IPN-P 231 (322)
T ss_dssp CCEEEEEEETTTTEEEEEEEEESCC---CEEEECTTSSEEEEEEGG------GTEEEEEESSSTTTTCEEEEEE-CSS-E
T ss_pred CCceEEEEeCCCCEEEEeccCCccC---cceEECCCCCEEEEEeCC------CCeEEEEECCCCcCCccceEEe-CCC-C
Confidence 1356899999888765442 11111 122222 44 48876432 247899998753 3333322 221 1
Q ss_pred ceeEEEECCEEEEEecc---------CCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEE
Q 040145 294 TGSSVVVYEHLFVVSEL---------ERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHI 364 (402)
Q Consensus 294 ~~~~~~~~~~l~~~gg~---------~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v 364 (402)
.+.++--+|.||+.... ....+.+||++...-..+.. +-........+++..+++|||.+...+. |
T Consensus 232 ~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~-~~g~~~~~~~~~~~~~g~L~v~~~~~~~----i 306 (322)
T 2fp8_A 232 GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPL-PPPFAGEHFEQIQEHDGLLYIGTLFHGS----V 306 (322)
T ss_dssp EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEEC-CTTTTTSCCCEEEEETTEEEEECSSCSE----E
T ss_pred CCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEEC-CCCCccccceEEEEeCCEEEEeecCCCc----e
Confidence 12222236788887533 13579999997654444432 1111113344555678999988654333 6
Q ss_pred Eeccccc
Q 040145 365 TRLSTSE 371 (402)
Q Consensus 365 ~~~~~~~ 371 (402)
..|++..
T Consensus 307 ~~~~~~~ 313 (322)
T 2fp8_A 307 GILVYDK 313 (322)
T ss_dssp EEEEC--
T ss_pred EEEeccc
Confidence 6666543
No 121
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.58 E-value=0.44 Score=48.26 Aligned_cols=205 Identities=10% Similarity=0.114 Sum_probs=110.2
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCC----ccc
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKM----ITA 195 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~----~~~ 195 (402)
-+++||+.++++..+....... ......+.....++.|++-.. ..+++||+.+++|+..... ...
T Consensus 428 Gl~~~d~~~~~~~~~~~~~~~l--~~~~v~~i~~d~~g~lwigt~---------~Gl~~~~~~~~~~~~~~~~~~~~~~~ 496 (795)
T 4a2l_A 428 GLSILHRNSGQVENFNQRNSQL--VNENVYAILPDGEGNLWLGTL---------SALVRFNPEQRSFTTIEKEKDGTPVV 496 (795)
T ss_dssp EEEEEETTTCCEEEECTTTSCC--SCSCEEEEEECSSSCEEEEES---------SCEEEEETTTTEEEECCBCTTCCBCC
T ss_pred ceeEEeCCCCcEEEeecCCCCc--CCCeeEEEEECCCCCEEEEec---------CceeEEeCCCCeEEEccccccccccC
Confidence 3788999988877764321110 011222333323567777542 2589999999999876532 111
Q ss_pred ccc-eEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCC---C-CCCcceeEEEE--CCEEEEEcccccCCc
Q 040145 196 RSF-FASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASM---G-TNMASYDAAVL--DGKLLVTEGWLWPFF 267 (402)
Q Consensus 196 r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~---~-~~~~~~~~~~~--~g~ly~~gG~~~~~~ 267 (402)
... .++.. -++.|++... ..+.+||+.++.+ ..... . .+.....+... +|.|++...
T Consensus 497 ~~~i~~i~~d~~g~lWigt~--------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~------ 561 (795)
T 4a2l_A 497 SKQITTLFRDSHKRLWIGGE--------EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR------ 561 (795)
T ss_dssp CCCEEEEEECTTCCEEEEES--------SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES------
T ss_pred CceEEEEEECCCCCEEEEeC--------CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC------
Confidence 111 12222 2567777542 3478899988887 43211 1 11111222232 577776432
Q ss_pred cCCcEEEEeCCCCCeeeccc--cccCCCceeEEE-ECCEEEEEeccCCcEEEEEeCCCCceeecCCC-CCCccccCCeEE
Q 040145 268 VSPRGQVYDPSTDNWESMAV--GLREGWTGSSVV-VYEHLFVVSELERMKLKVYDPSTDSWETIEGP-PLPEQICKPFAV 343 (402)
Q Consensus 268 ~~~~~~~yd~~~~~W~~~~~--~~~~~~~~~~~~-~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~-~~p~~~~~~~~~ 343 (402)
..+.+||+.++++..... .++.......+. -+|.|++.+. ..+.+||++++++...... .++...-...++
T Consensus 562 --~Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t~---~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~ 636 (795)
T 4a2l_A 562 --EGFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLSTN---RGISCFNPETEKFRNFTESDGLQSNQFNTASY 636 (795)
T ss_dssp --SCEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEET---TEEEEEETTTTEEEEECGGGTCSCSCEEEEEE
T ss_pred --CCceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEcC---CceEEEcCCCCcEEEcCCcCCCccccCccCce
Confidence 258999999998876543 233322222222 2578887643 4689999999988765421 233211111233
Q ss_pred EE-eCCEEEEEec
Q 040145 344 NA-CDCRVYVVGR 355 (402)
Q Consensus 344 ~~-~~~~i~v~GG 355 (402)
+. .+|+||+-|-
T Consensus 637 ~~~~~G~l~~g~~ 649 (795)
T 4a2l_A 637 CRTSVGQMYFGGI 649 (795)
T ss_dssp EECTTSCEEEEET
T ss_pred eECCCCeEEEecC
Confidence 33 4677776543
No 122
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.58 E-value=0.26 Score=49.67 Aligned_cols=182 Identities=12% Similarity=0.040 Sum_probs=94.5
Q ss_pred EEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC------Ccee---e---
Q 040145 121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK------NRWT---V--- 188 (402)
Q Consensus 121 ~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t------~~W~---~--- 188 (402)
+.+||+.++++..................+.....++.|++-.- ..-+++||+.+ ..+. .
T Consensus 394 L~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~--------~~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 465 (758)
T 3ott_A 394 INRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTC--------LGGIFVVDKHKLMQSTSGQYIAEQNYSV 465 (758)
T ss_dssp EEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEES--------SSCEEEEEHHHHHHCCSSEEECSEEECG
T ss_pred HhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEEC--------CCceEEEccccccccCCcceeccccccc
Confidence 67899998888765321110000001122233324578887431 11478888764 1221 1
Q ss_pred cCCCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCC-CcceeEEEE--CCEEEEEccccc
Q 040145 189 MNKMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTN-MASYDAAVL--DGKLLVTEGWLW 264 (402)
Q Consensus 189 ~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~-~~~~~~~~~--~g~ly~~gG~~~ 264 (402)
...++... -.++.. -++.|++++|. ...+.+||+.+++++....-... .....+... +|.|++-. .
T Consensus 466 ~~~l~~~~-i~~i~~d~~g~lWi~~~t------~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~-- 535 (758)
T 3ott_A 466 HNGLSGMF-INQIIPDNEGNVWVLLYN------NKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-H-- 535 (758)
T ss_dssp GGTCSCSC-EEEEEECTTSCEEEEETT------CSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-T--
T ss_pred ccccccce-eeeEEEcCCCCEEEEccC------CCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-c--
Confidence 11122111 112221 25788886665 34588999999998876321111 112223333 57787632 1
Q ss_pred CCccCCcEEEEeCCCCCeeeccc-cccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCceeec
Q 040145 265 PFFVSPRGQVYDPSTDNWESMAV-GLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETI 328 (402)
Q Consensus 265 ~~~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~ 328 (402)
..+.+||+.++++..... .++.......+.-+|.|++... ..+.+||+++.+....
T Consensus 536 -----~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~~g~lWi~t~---~Gl~~~~~~~~~~~~~ 592 (758)
T 3ott_A 536 -----GGVMRINPKDESQQSISFGSFSNNEILSMTCVKNSIWVSTT---NGLWIIDRKTMDARQQ 592 (758)
T ss_dssp -----TEEEEECC--CCCCBCCCCC---CCEEEEEEETTEEEEEES---SCEEEEETTTCCEEEC
T ss_pred -----CceEEEecCCCceEEecccCCCccceEEEEECCCCEEEECC---CCeEEEcCCCceeEEe
Confidence 268999999988876532 2332222222344788887543 3589999999877654
No 123
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=96.57 E-value=0.27 Score=44.32 Aligned_cols=181 Identities=14% Similarity=0.119 Sum_probs=91.2
Q ss_pred EEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccc-eEEEEE---CCEEEEEcCCCCCCCCCCeeE
Q 040145 150 CVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSF-FASGVI---GGMIYVAGGSSADLFELDSAE 225 (402)
Q Consensus 150 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~-~~~~~~---~~~iyv~GG~~~~~~~~~~~~ 225 (402)
++....++..++.|+.+ ..+.+||..+++-... +...... .++... ++..++.|+. -..+.
T Consensus 159 ~~~~~~~~~~l~t~s~D-------~~v~lwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~g~~l~sgs~------Dg~v~ 223 (354)
T 2pbi_B 159 ACSFTNSDMQILTASGD-------GTCALWDVESGQLLQS--FHGHGADVLCLDLAPSETGNTFVSGGC------DKKAM 223 (354)
T ss_dssp EEEECSSSSEEEEEETT-------SEEEEEETTTCCEEEE--EECCSSCEEEEEECCCSSCCEEEEEET------TSCEE
T ss_pred EEEEeCCCCEEEEEeCC-------CcEEEEeCCCCeEEEE--EcCCCCCeEEEEEEeCCCCCEEEEEeC------CCeEE
Confidence 34443455555555542 3788999988763321 1111111 112221 3467777776 34688
Q ss_pred EEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCcee-EEE--E
Q 040145 226 VLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGS-SVV--V 300 (402)
Q Consensus 226 ~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~-~~~--~ 300 (402)
+||..+++.... +........++.+ ++.+++.|+.+ ..+..||+.++.-..+-. ........ .+. .
T Consensus 224 ~wd~~~~~~~~~--~~~h~~~v~~v~~~p~~~~l~s~s~D------~~v~lwd~~~~~~~~~~~-~~~~~~~~~~~~~s~ 294 (354)
T 2pbi_B 224 VWDMRSGQCVQA--FETHESDVNSVRYYPSGDAFASGSDD------ATCRLYDLRADREVAIYS-KESIIFGASSVDFSL 294 (354)
T ss_dssp EEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEEC-CTTCCSCEEEEEECT
T ss_pred EEECCCCcEEEE--ecCCCCCeEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEEEc-CCCcccceeEEEEeC
Confidence 999988764332 1111122223333 56777777753 368889987754221111 11111111 222 2
Q ss_pred CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEE-EeCCEEEEEecCcee
Q 040145 301 YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLHV 359 (402)
Q Consensus 301 ~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~ 359 (402)
++.+++.|+. ...+.+||..+.. .+. .+......-.++. ..+++.++.|+.++.
T Consensus 295 ~g~~l~~g~~-d~~i~vwd~~~~~--~~~--~l~~h~~~v~~l~~spdg~~l~sgs~D~~ 349 (354)
T 2pbi_B 295 SGRLLFAGYN-DYTINVWDVLKGS--RVS--ILFGHENRVSTLRVSPDGTAFCSGSWDHT 349 (354)
T ss_dssp TSSEEEEEET-TSCEEEEETTTCS--EEE--EECCCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred CCCEEEEEEC-CCcEEEEECCCCc--eEE--EEECCCCcEEEEEECCCCCEEEEEcCCCC
Confidence 5777777665 5679999986654 221 1111101112222 357778888876554
No 124
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=96.57 E-value=0.17 Score=46.38 Aligned_cols=159 Identities=9% Similarity=0.111 Sum_probs=78.0
Q ss_pred eEEEEccCC-EEEEEeCccCCCCCCCceEEEEECCCCceeecCC-CcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeE
Q 040145 149 RCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNK-MITARSFFASGVI-GGMIYVAGGSSADLFELDSAE 225 (402)
Q Consensus 149 ~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~-~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~ 225 (402)
.++....++ .+++.|+.+ ..+.+||..+++....-. ......-.+++.. ++..++.|+. ...+.
T Consensus 135 ~~~~~~p~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~ 201 (402)
T 2aq5_A 135 GIVAWHPTAQNVLLSAGCD-------NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR------DKRVR 201 (402)
T ss_dssp EEEEECSSBTTEEEEEETT-------SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET------TSEEE
T ss_pred EEEEECcCCCCEEEEEcCC-------CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec------CCcEE
Confidence 334443344 577777652 269999998876433210 1111122233332 5666666665 45789
Q ss_pred EEcCCCCcEEEcC--CCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCe--eeccccccCCCceeEEEEC
Q 040145 226 VLDPVKGNWRTIA--SMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNW--ESMAVGLREGWTGSSVVVY 301 (402)
Q Consensus 226 ~yd~~t~~W~~~~--~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W--~~~~~~~~~~~~~~~~~~~ 301 (402)
+||+.++.-...- .............-++++++.|.... ....+.+||..+..- .................-+
T Consensus 202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 278 (402)
T 2aq5_A 202 VIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM---SERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPD 278 (402)
T ss_dssp EEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTT---CCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETT
T ss_pred EEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCC---CCceEEEEcCccccCCceEEeccCCCceeEEEEcCC
Confidence 9999887643221 11111111122223778777762110 123788999877542 1111101111111111224
Q ss_pred CE-EEEEeccCCcEEEEEeCCCCc
Q 040145 302 EH-LFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 302 ~~-l~~~gg~~~~~~~~yd~~~~~ 324 (402)
+. +++.|+. ...+.+||..+.+
T Consensus 279 ~~~l~~~g~~-dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 279 TNIVYLCGKG-DSSIRYFEITSEA 301 (402)
T ss_dssp TTEEEEEETT-CSCEEEEEECSST
T ss_pred CCEEEEEEcC-CCeEEEEEecCCC
Confidence 44 4455543 4578888887765
No 125
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=96.57 E-value=0.21 Score=45.12 Aligned_cols=153 Identities=14% Similarity=0.074 Sum_probs=72.7
Q ss_pred eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcc---cccceEEEEE-CCEEEEEcCCCCCCCCCCee
Q 040145 149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMIT---ARSFFASGVI-GGMIYVAGGSSADLFELDSA 224 (402)
Q Consensus 149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~---~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~ 224 (402)
.+++...++.+++. +. + ..+.+||..+++-........ ...-.+++.. +++.++.|+. ...+
T Consensus 98 ~~~~~s~d~~~l~~-s~--d-----g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~------dg~v 163 (357)
T 4g56_B 98 TDVAWVSEKGILVA-SD--S-----GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK------DFSV 163 (357)
T ss_dssp EEEEEETTTEEEEE-ET--T-----SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEET------TSCE
T ss_pred EEEEEcCCCCEEEE-EC--C-----CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeC------CCeE
Confidence 34444456666654 33 1 268899988775333222111 1111223332 5666777765 3458
Q ss_pred EEEcCCCCcEEEcCCCCCCCcceeEEEE--CC-EEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE-
Q 040145 225 EVLDPVKGNWRTIASMGTNMASYDAAVL--DG-KLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV- 300 (402)
Q Consensus 225 ~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g-~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~- 300 (402)
.+||..+++-... +.........+.+ ++ .+++.++.+ ..+.+||+.+.+-..............++.+
T Consensus 164 ~iwd~~~~~~~~~--~~~h~~~v~~v~~s~~~~~~~~s~~~d------g~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~s 235 (357)
T 4g56_B 164 KVWDLSQKAVLKS--YNAHSSEVNCVAACPGKDTIFLSCGED------GRILLWDTRKPKPATRIDFCASDTIPTSVTWH 235 (357)
T ss_dssp EEEETTTTEEEEE--ECCCSSCEEEEEECTTCSSCEEEEETT------SCEEECCTTSSSCBCBCCCTTCCSCEEEEEEC
T ss_pred EEEECCCCcEEEE--EcCCCCCEEEEEEccCCCceeeeeccC------CceEEEECCCCceeeeeeeccccccccchhhh
Confidence 8999988764322 2221222222222 33 466666643 3688899887653322111111111122333
Q ss_pred --CCEEEEEeccCCcEEEEEeCCCCc
Q 040145 301 --YEHLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 301 --~~~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
++.+++.|+. ...+.+||..+.+
T Consensus 236 p~~~~~la~g~~-d~~i~~wd~~~~~ 260 (357)
T 4g56_B 236 PEKDDTFACGDE-TGNVSLVNIKNPD 260 (357)
T ss_dssp TTSTTEEEEEES-SSCEEEEESSCGG
T ss_pred hcccceEEEeec-ccceeEEECCCCc
Confidence 4567777665 4578999987653
No 126
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=96.56 E-value=0.2 Score=44.69 Aligned_cols=215 Identities=12% Similarity=0.047 Sum_probs=107.0
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK 183 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t 183 (402)
++.+|+.+.. ...+++||+.+++...+. .+ ......+...++.+++... ..+++||+.+
T Consensus 60 ~~~l~~~d~~----~~~i~~~d~~~~~~~~~~-~~-------~~v~~i~~~~dg~l~v~~~---------~gl~~~d~~~ 118 (326)
T 2ghs_A 60 SGTAWWFNIL----ERELHELHLASGRKTVHA-LP-------FMGSALAKISDSKQLIASD---------DGLFLRDTAT 118 (326)
T ss_dssp TTEEEEEEGG----GTEEEEEETTTTEEEEEE-CS-------SCEEEEEEEETTEEEEEET---------TEEEEEETTT
T ss_pred CCEEEEEECC----CCEEEEEECCCCcEEEEE-CC-------CcceEEEEeCCCeEEEEEC---------CCEEEEECCC
Confidence 4667777533 235889999887655432 22 1123333334788887642 1599999999
Q ss_pred CceeecCCCccc----ccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CC-EE
Q 040145 184 NRWTVMNKMITA----RSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DG-KL 256 (402)
Q Consensus 184 ~~W~~~~~~~~~----r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g-~l 256 (402)
++.+.+...... +.......-++++|+.............+++|| +++.+.+.. .........+ +| .+
T Consensus 119 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~---~~~~~~~i~~s~dg~~l 193 (326)
T 2ghs_A 119 GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA---DISIPNSICFSPDGTTG 193 (326)
T ss_dssp CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE---EESSEEEEEECTTSCEE
T ss_pred CcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC---CCcccCCeEEcCCCCEE
Confidence 988765433211 111111222567776432111111245788888 455554321 0011122222 45 57
Q ss_pred EEEcccccCCccCCcEEEEeCC--CC-Ceee---ccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeec
Q 040145 257 LVTEGWLWPFFVSPRGQVYDPS--TD-NWES---MAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETI 328 (402)
Q Consensus 257 y~~gG~~~~~~~~~~~~~yd~~--~~-~W~~---~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~ 328 (402)
|+.... ...+++||.. ++ .... +............+.+ +|.+|+... ....+.+||+....-..+
T Consensus 194 yv~~~~------~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~-~~~~v~~~d~~g~~~~~i 266 (326)
T 2ghs_A 194 YFVDTK------VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW-GEGAVDRYDTDGNHIARY 266 (326)
T ss_dssp EEEETT------TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE-TTTEEEEECTTCCEEEEE
T ss_pred EEEECC------CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe-CCCEEEEECCCCCEEEEE
Confidence 776432 2478899875 44 3211 1100000111112333 678887642 245799999965443444
Q ss_pred CCCCCCccccCCeEEEEe--C-CEEEEEecC
Q 040145 329 EGPPLPEQICKPFAVNAC--D-CRVYVVGRN 356 (402)
Q Consensus 329 ~~~~~p~~~~~~~~~~~~--~-~~i~v~GG~ 356 (402)
. +|. ....+++.. + +.|||....
T Consensus 267 ~---~~~--~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 267 E---VPG--KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp E---CSC--SBEEEEEEESTTSCEEEEEEBC
T ss_pred E---CCC--CCcEEEEEecCCCCEEEEEecC
Confidence 3 332 122333332 2 468776653
No 127
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.54 E-value=0.4 Score=42.77 Aligned_cols=236 Identities=11% Similarity=0.091 Sum_probs=114.5
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK 183 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t 183 (402)
.+.+|++|. . . .++...-.-.+|+.+....... ...+..+.+ .++.+|+.|.. ..+++-+=.-
T Consensus 46 ~~~~~~~G~-~--g--~i~~s~DgG~tW~~~~~~~~~~---~~~~~~i~~-~~~~~~~~g~~--------g~i~~S~DgG 108 (327)
T 2xbg_A 46 RHHGWLVGV-N--A--TLMETRDGGQTWEPRTLVLDHS---DYRFNSVSF-QGNEGWIVGEP--------PIMLHTTDGG 108 (327)
T ss_dssp SSCEEEEET-T--T--EEEEESSTTSSCEECCCCCSCC---CCEEEEEEE-ETTEEEEEEET--------TEEEEESSTT
T ss_pred CCcEEEEcC-C--C--eEEEeCCCCCCCeECCCCCCCC---CccEEEEEe-cCCeEEEEECC--------CeEEEECCCC
Confidence 455666542 1 1 1333333345799875321011 122344444 36788887532 1344422223
Q ss_pred CceeecCCCc-ccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE-CCEEEEEc
Q 040145 184 NRWTVMNKMI-TARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL-DGKLLVTE 260 (402)
Q Consensus 184 ~~W~~~~~~~-~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~ly~~g 260 (402)
.+|+.+.... .+-....++. -++.+|+.+.. ..++.-+=.-.+|+.+..... ...+..+.. ++.+|++|
T Consensus 109 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------g~v~~S~DgG~tW~~~~~~~~-~~~~~~~~~~~~~~~~~g 180 (327)
T 2xbg_A 109 QSWSQIPLDPKLPGSPRLIKALGNGSAEMITNV-------GAIYRTKDSGKNWQALVQEAI-GVMRNLNRSPSGEYVAVS 180 (327)
T ss_dssp SSCEECCCCTTCSSCEEEEEEEETTEEEEEETT-------CCEEEESSTTSSEEEEECSCC-CCEEEEEECTTSCEEEEE
T ss_pred CCceECccccCCCCCeEEEEEECCCCEEEEeCC-------ccEEEEcCCCCCCEEeecCCC-cceEEEEEcCCCcEEEEE
Confidence 5899876421 1222233333 46788887742 123333223457998754322 222333333 56777665
Q ss_pred ccccCCccCCcEEEEe-CCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCC-CCceeecCCCCCCcccc
Q 040145 261 GWLWPFFVSPRGQVYD-PSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPS-TDSWETIEGPPLPEQIC 338 (402)
Q Consensus 261 G~~~~~~~~~~~~~yd-~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~-~~~W~~~~~~~~p~~~~ 338 (402)
... .++.-+ ....+|+.+..+.+.........-++.+|+++.. ..++..+.+ ..+|+.+....++.. .
T Consensus 181 ~~G-------~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~--G~~~~s~~D~G~tW~~~~~~~~~~~-~ 250 (327)
T 2xbg_A 181 SRG-------SFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNG--GKIAFSDPDNSENWGELLSPLRRNS-V 250 (327)
T ss_dssp TTS-------SEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEETT--TEEEEEETTEEEEECCCBCTTSSCC-S
T ss_pred CCC-------cEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeCC--ceEEEecCCCCCeeEeccCCcccCC-c
Confidence 321 344443 3357899886432222221112236788877643 246555433 568998763213321 1
Q ss_pred CCeEEEE-eCCEEEEEecCceeeeEEEEecccccccCceeeeEEEEeC
Q 040145 339 KPFAVNA-CDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVVDA 385 (402)
Q Consensus 339 ~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W~~~~~ 385 (402)
..+++.. .++.+|++|+.. .++.-...- .+|+.+..
T Consensus 251 ~~~~v~~~~~~~~~~~g~~g-----~i~~S~DgG------~tW~~~~~ 287 (327)
T 2xbg_A 251 GFLDLAYRTPNEVWLAGGAG-----ALLCSQDGG------QTWQQDVD 287 (327)
T ss_dssp CEEEEEESSSSCEEEEESTT-----CEEEESSTT------SSCEECGG
T ss_pred ceEEEEecCCCEEEEEeCCC-----eEEEeCCCC------cccEEcCc
Confidence 2233333 367899988732 243332222 37888764
No 128
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.53 E-value=0.25 Score=44.17 Aligned_cols=180 Identities=12% Similarity=0.116 Sum_probs=88.3
Q ss_pred EEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccccc-ceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEc
Q 040145 151 VSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARS-FFASGVI-GGMIYVAGGSSADLFELDSAEVLD 228 (402)
Q Consensus 151 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~-~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd 228 (402)
+.+..++.+++.|+.+ ..+.+||..++.-... ++.... -.+++.. ++..++.||. ...+.+||
T Consensus 61 ~~~s~d~~~l~s~s~D-------g~v~iWd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~------d~~v~iw~ 125 (340)
T 1got_B 61 MHWGTDSRLLLSASQD-------GKLIIWDSYTTNKVHA--IPLRSSWVMTCAYAPSGNYVACGGL------DNICSIYN 125 (340)
T ss_dssp EEECTTSSEEEEEETT-------TEEEEEETTTCCEEEE--EECSSSCEEEEEECTTSSEEEEEET------TCEEEEEE
T ss_pred EEECCCCCEEEEEeCC-------CcEEEEECCCCCcceE--eecCCccEEEEEECCCCCEEEEEeC------CCeEEEEE
Confidence 3343466777777753 2788999887653221 111111 1222222 4566777775 35678888
Q ss_pred CCCCc--EEEcCCCCCCCcceeEE--EECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CC
Q 040145 229 PVKGN--WRTIASMGTNMASYDAA--VLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YE 302 (402)
Q Consensus 229 ~~t~~--W~~~~~~~~~~~~~~~~--~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~ 302 (402)
..+.. ......+.........+ .-++.+ +.|+.+ ..+..||+.+++-...-... .... .++.+ ++
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l-~s~s~d------~~i~~wd~~~~~~~~~~~~h-~~~v-~~~~~~~~~ 196 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQI-VTSSGD------TTCALWDIETGQQTTTFTGH-TGDV-MSLSLAPDT 196 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEETTEE-EEEETT------SCEEEEETTTTEEEEEECCC-SSCE-EEEEECTTS
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCCCcE-EEEECC------CcEEEEECCCCcEEEEEcCC-CCce-EEEEECCCC
Confidence 87643 11111111111111111 225564 444432 36889999876532211101 1111 12222 56
Q ss_pred EEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEE-EeCCEEEEEecCcee
Q 040145 303 HLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLHV 359 (402)
Q Consensus 303 ~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~ 359 (402)
.+++.|+. ...+.+||..+..-... +........+++ ..++.+++.|+.+..
T Consensus 197 ~~l~sg~~-d~~v~~wd~~~~~~~~~----~~~h~~~v~~v~~~p~~~~l~s~s~d~~ 249 (340)
T 1got_B 197 RLFVSGAC-DASAKLWDVREGMCRQT----FTGHESDINAICFFPNGNAFATGSDDAT 249 (340)
T ss_dssp SEEEEEET-TSCEEEEETTTCSEEEE----ECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CEEEEEeC-CCcEEEEECCCCeeEEE----EcCCcCCEEEEEEcCCCCEEEEEcCCCc
Confidence 77777765 45789999877643221 111001112233 346778888876544
No 129
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=96.53 E-value=0.13 Score=44.16 Aligned_cols=185 Identities=11% Similarity=0.010 Sum_probs=94.9
Q ss_pred eEEEeecCC-CcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccc
Q 040145 120 QWQVLDLTH-YCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSF 198 (402)
Q Consensus 120 ~~~~~d~~~-~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~ 198 (402)
.++++|..+ .+...+...... .......+..++..+++++...+ ....++.+|..++..+.+..... .
T Consensus 63 ~i~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~spdg~~l~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~---~ 131 (297)
T 2ojh_A 63 LLYRLSLAGDPSPEKVDTGFAT-----ICNNDHGISPDGALYAISDKVEF---GKSAIYLLPSTGGTPRLMTKNLP---S 131 (297)
T ss_dssp EEEEEESSSCCSCEECCCTTCC-----CBCSCCEECTTSSEEEEEECTTT---SSCEEEEEETTCCCCEECCSSSS---E
T ss_pred eEEEEeCCCCCCceEecccccc-----ccccceEECCCCCEEEEEEeCCC---CcceEEEEECCCCceEEeecCCC---c
Confidence 588899988 766655432211 11122233335655555553211 35589999988877555543221 2
Q ss_pred eEEEEE-CC-EEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCE-EEEEcccccCCccCCcEE
Q 040145 199 FASGVI-GG-MIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGK-LLVTEGWLWPFFVSPRGQ 273 (402)
Q Consensus 199 ~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~-ly~~gG~~~~~~~~~~~~ 273 (402)
..+... ++ .|++.++.++ ...++.+|..+.....+..... ....... +|+ |++.+...+ ...++
T Consensus 132 ~~~~~spdg~~l~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~----~~~i~ 200 (297)
T 2ojh_A 132 YWHGWSPDGKSFTYCGIRDQ----VFDIYSMDIDSGVETRLTHGEG---RNDGPDYSPDGRWIYFNSSRTG----QMQIW 200 (297)
T ss_dssp EEEEECTTSSEEEEEEEETT----EEEEEEEETTTCCEEECCCSSS---CEEEEEECTTSSEEEEEECTTS----SCEEE
T ss_pred cceEECCCCCEEEEEECCCC----ceEEEEEECCCCcceEcccCCC---ccccceECCCCCEEEEEecCCC----CccEE
Confidence 222332 33 4554554322 2356777777777666543322 1122222 555 444433221 23677
Q ss_pred EEeCCCCCeeeccccccCCCceeEEE--ECCEEEEEeccC----------CcEEEEEeCCCCceeecC
Q 040145 274 VYDPSTDNWESMAVGLREGWTGSSVV--VYEHLFVVSELE----------RMKLKVYDPSTDSWETIE 329 (402)
Q Consensus 274 ~yd~~~~~W~~~~~~~~~~~~~~~~~--~~~~l~~~gg~~----------~~~~~~yd~~~~~W~~~~ 329 (402)
.++........+... . .....+. -+++.+++++.. ...+++||..+.+...+.
T Consensus 201 ~~~~~~~~~~~~~~~-~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 265 (297)
T 2ojh_A 201 RVRVDGSSVERITDS-A--YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF 265 (297)
T ss_dssp EEETTSSCEEECCCC-S--EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred EECCCCCCcEEEecC-C--cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence 788777666655431 1 1111122 256655554432 256999999887765554
No 130
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.087 Score=53.14 Aligned_cols=183 Identities=12% Similarity=0.041 Sum_probs=98.8
Q ss_pred cCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce-EEEEE-C--CEEEEEcCCCCCCCCCCeeEEEcCC
Q 040145 155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF-ASGVI-G--GMIYVAGGSSADLFELDSAEVLDPV 230 (402)
Q Consensus 155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~-~~~~~-~--~~iyv~GG~~~~~~~~~~~~~yd~~ 230 (402)
.++..++.|+.+ ..+.+||..++++..+..+....... ++... + +..++.|+. -..+.+||..
T Consensus 19 ~dg~~latg~~d-------g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~------Dg~I~vwd~~ 85 (753)
T 3jro_A 19 YYGKRLATCSSD-------KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY------DGKVLIWKEE 85 (753)
T ss_dssp SSSCCEEEEETT-------TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEET------TSCEEEEEEE
T ss_pred CCCCeEEEEECC-------CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeC------CCeEEEEECC
Confidence 356677777652 27889998877776654443332222 33332 2 566777775 3468899999
Q ss_pred CCcEEEcCCCCCCCcceeEEEE--C--CEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE------
Q 040145 231 KGNWRTIASMGTNMASYDAAVL--D--GKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV------ 300 (402)
Q Consensus 231 t~~W~~~~~~~~~~~~~~~~~~--~--g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~------ 300 (402)
++.|..+..+.........+.+ + +.+++.|+.+ ..+.+||+.++.-............-.++..
T Consensus 86 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d------g~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 159 (753)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--
T ss_pred CCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCC------CcEEEEEeecCCCcceeEeecCCCceEEEEecCcccc
Confidence 9888766554443333334433 3 6777777753 3688999877632211110111111111222
Q ss_pred ---------CCEEEEEeccCCcEEEEEeCCCC--ceeecCCCCCCccccCCeEEEE-eC---CEEEEEecCcee
Q 040145 301 ---------YEHLFVVSELERMKLKVYDPSTD--SWETIEGPPLPEQICKPFAVNA-CD---CRVYVVGRNLHV 359 (402)
Q Consensus 301 ---------~~~l~~~gg~~~~~~~~yd~~~~--~W~~~~~~~~p~~~~~~~~~~~-~~---~~i~v~GG~~~~ 359 (402)
++.+++.|+. ...+.+||..+. .+..+.. +........++.. .+ +.+++.||.++.
T Consensus 160 ~~~~~~~~~d~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~--~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~ 230 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGA-DNLVKIWKYNSDAQTYVLEST--LEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 230 (753)
T ss_dssp -------CGGGCCEEEEET-TSCEEEEEEETTTTEEEEEEE--ECCCSSCEEEEEECCCCSSSEEEEEEESSSC
T ss_pred cccccccCCCCCEEEEEEC-CCeEEEEeccCCcccceeeee--ecCCCCcEEEEEeccCCCCCCEEEEEecCCE
Confidence 3566777665 446788877554 3443331 1111111223332 34 688888886544
No 131
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=96.47 E-value=0.44 Score=42.39 Aligned_cols=207 Identities=11% Similarity=0.063 Sum_probs=106.4
Q ss_pred eEEEEccCCEEEEEeCccCCC-----------------CCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEE
Q 040145 149 RCVSIPREGTLFVCGGMVSDV-----------------DCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYV 210 (402)
Q Consensus 149 ~~~~~~~~~~i~v~GG~~~~~-----------------~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv 210 (402)
..+++..++.+|+.+..+..- ......++++|+.+++.........-.....+++- ++.||+
T Consensus 27 ~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v 106 (329)
T 3fvz_A 27 SGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWV 106 (329)
T ss_dssp EEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEE
T ss_pred eEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEE
Confidence 445555678899887653100 00124699999998875432111111122334433 578998
Q ss_pred EcCCCCCCCCCCeeEEEcCCCC--cEEEcCCC------CCCCcceeEEEE---CCEEEEEcccccCCccCCcEEEEeCCC
Q 040145 211 AGGSSADLFELDSAEVLDPVKG--NWRTIASM------GTNMASYDAAVL---DGKLLVTEGWLWPFFVSPRGQVYDPST 279 (402)
Q Consensus 211 ~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~------~~~~~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~yd~~~ 279 (402)
.... ...+.+||+... .-..+... .........+.+ ++.||+..+.. ...+.+||+..
T Consensus 107 ~d~~------~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~-----~~~I~~~~~~g 175 (329)
T 3fvz_A 107 TDVA------LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC-----NSRIVQFSPSG 175 (329)
T ss_dssp EETT------TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS-----CCEEEEECTTS
T ss_pred EECC------CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC-----CCeEEEEcCCC
Confidence 8754 467899998765 22333211 111122333333 68899987521 24789999654
Q ss_pred CCeeeccccc------cCCCc-eeEEEE--C-CEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCE
Q 040145 280 DNWESMAVGL------REGWT-GSSVVV--Y-EHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCR 349 (402)
Q Consensus 280 ~~W~~~~~~~------~~~~~-~~~~~~--~-~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~ 349 (402)
..-..+...- +.... ...+.+ + +.||+.... ...|.+||+++.+....- ..+.......+++...+.
T Consensus 176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~-~~~I~~~~~~~G~~~~~~--~~~~~~~~~~~~~~~pg~ 252 (329)
T 3fvz_A 176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE-NGRIQCFKTDTKEFVREI--KHASFGRNVFAISYIPGF 252 (329)
T ss_dssp CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT-TTEEEEEETTTCCEEEEE--CCTTTTTCEEEEEEETTE
T ss_pred CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC-CCEEEEEECCCCcEEEEE--eccccCCCcceeeecCCE
Confidence 4333332100 01111 122333 4 889987654 668999999866554432 122111223344444467
Q ss_pred EEEEecCce---eeeEEEEeccc
Q 040145 350 VYVVGRNLH---VAVGHITRLST 369 (402)
Q Consensus 350 i~v~GG~~~---~~~~~v~~~~~ 369 (402)
+|...|... .....+..++.
T Consensus 253 ~~~~~g~~~v~~~~~~~v~~~~~ 275 (329)
T 3fvz_A 253 LFAVNGKPYFGDQEPVQGFVMNF 275 (329)
T ss_dssp EEEEECCCCTTCSCCCCEEEEET
T ss_pred EEEeCCCEEeccCCCcEEEEEEc
Confidence 777766432 12234555554
No 132
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.18 Score=44.94 Aligned_cols=191 Identities=10% Similarity=0.098 Sum_probs=91.6
Q ss_pred eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC--CceeecCCCcccccce-EEEEE-CCEEEEEcCCCCCCCCCCee
Q 040145 149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK--NRWTVMNKMITARSFF-ASGVI-GGMIYVAGGSSADLFELDSA 224 (402)
Q Consensus 149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t--~~W~~~~~~~~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~ 224 (402)
.++.+..++..++.|+.+ ..+.+||..+ ..++.+..+....... .+... ++.+++.|+. -..+
T Consensus 111 ~~v~~sp~g~~las~s~D-------~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~------D~~i 177 (330)
T 2hes_X 111 KGVAWSNDGYYLATCSRD-------KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY------DDTV 177 (330)
T ss_dssp EEEEECTTSCEEEEEETT-------SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEET------TSCE
T ss_pred EEEEECCCCCEEEEEeCC-------CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcC------CCeE
Confidence 344454567777777763 2688899843 2343332222111111 22222 4566777775 3457
Q ss_pred EEEcCCCCcEEEcCCCCCCCcceeEEEE--C--CEEEEEcccccCCccCCcEEEEeCCCC------Ceeecccccc--CC
Q 040145 225 EVLDPVKGNWRTIASMGTNMASYDAAVL--D--GKLLVTEGWLWPFFVSPRGQVYDPSTD------NWESMAVGLR--EG 292 (402)
Q Consensus 225 ~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~--g~ly~~gG~~~~~~~~~~~~~yd~~~~------~W~~~~~~~~--~~ 292 (402)
.+||..++.|..+..+.........+.+ + +..++.|+.+ ..+.+||+.+. .|........ ..
T Consensus 178 ~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D------~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~ 251 (330)
T 2hes_X 178 RIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDD------STVRVWKYMGDDEDDQQEWVCEAILPDVHKR 251 (330)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETT------SCEEEEEEEEECTTSCEEEEEEEECCSCCSS
T ss_pred EEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCC------CeEEEEEecCCCccccceeEEeeeccccccc
Confidence 7888877777655444332222222333 2 3455556543 25666766432 3443332111 11
Q ss_pred CceeEEEECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE-e--CCEEEEEecCcee
Q 040145 293 WTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA-C--DCRVYVVGRNLHV 359 (402)
Q Consensus 293 ~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~--~~~i~v~GG~~~~ 359 (402)
.....+...+.+++.||. ...+.+||..+..|..+...........-.++.. . ++++++.||.+..
T Consensus 252 ~v~~v~~s~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~ 320 (330)
T 2hes_X 252 QVYNVAWGFNGLIASVGA-DGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGI 320 (330)
T ss_dssp CEEEEEECTTSCEEEEET-TSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSE
T ss_pred ceEEEEEcCCCEEEEEeC-CCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCc
Confidence 111112224445556665 4578889988888865432111111001112222 2 5678888886644
No 133
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=96.45 E-value=0.39 Score=43.24 Aligned_cols=207 Identities=16% Similarity=0.139 Sum_probs=100.3
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeec----CCCccc
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVM----NKMITA 195 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~----~~~~~~ 195 (402)
.+.++|..+......-..+. ....++....++..++.||.+ ..+.+|+.....-... ..+...
T Consensus 87 ~v~vWd~~~~~~~~~~~~~~------~~v~~~~~sp~g~~lasg~~d-------~~i~v~~~~~~~~~~~~~~~~~~~~h 153 (354)
T 2pbi_B 87 KVIVWDSFTTNKEHAVTMPC------TWVMACAYAPSGCAIACGGLD-------NKCSVYPLTFDKNENMAAKKKSVAMH 153 (354)
T ss_dssp EEEEEETTTCCEEEEEECSS------SCCCEEEECTTSSEEEEESTT-------SEEEEEECCCCTTCCSGGGCEEEEEC
T ss_pred eEEEEECCCCCcceEEecCC------CCEEEEEECCCCCEEEEeeCC-------CCEEEEEEeccccccccccceeeecc
Confidence 36677876665433222221 122344444577888888873 2677787654321110 001101
Q ss_pred ccc-eEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE----CCEEEEEcccccCCccC
Q 040145 196 RSF-FASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL----DGKLLVTEGWLWPFFVS 269 (402)
Q Consensus 196 r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~----~g~ly~~gG~~~~~~~~ 269 (402)
... ..+... ++..++.|+. -..+.+||..+++-... +........+..+ ++.+++.|+.+
T Consensus 154 ~~~v~~~~~~~~~~~l~t~s~------D~~v~lwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~g~~l~sgs~D------ 219 (354)
T 2pbi_B 154 TNYLSACSFTNSDMQILTASG------DGTCALWDVESGQLLQS--FHGHGADVLCLDLAPSETGNTFVSGGCD------ 219 (354)
T ss_dssp SSCEEEEEECSSSSEEEEEET------TSEEEEEETTTCCEEEE--EECCSSCEEEEEECCCSSCCEEEEEETT------
T ss_pred CCcEEEEEEeCCCCEEEEEeC------CCcEEEEeCCCCeEEEE--EcCCCCCeEEEEEEeCCCCCEEEEEeCC------
Confidence 111 122222 3444445544 45688999988764321 1111111112222 35677777754
Q ss_pred CcEEEEeCCCCCeeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCe-EE-EE
Q 040145 270 PRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPF-AV-NA 345 (402)
Q Consensus 270 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~-~~-~~ 345 (402)
..+..||+.+++....-. ...... .++.+ ++.+++.|+. ...+.+||..+..-..+- ..... .... ++ ..
T Consensus 220 g~v~~wd~~~~~~~~~~~-~h~~~v-~~v~~~p~~~~l~s~s~-D~~v~lwd~~~~~~~~~~--~~~~~-~~~~~~~~~s 293 (354)
T 2pbi_B 220 KKAMVWDMRSGQCVQAFE-THESDV-NSVRYYPSGDAFASGSD-DATCRLYDLRADREVAIY--SKESI-IFGASSVDFS 293 (354)
T ss_dssp SCEEEEETTTCCEEEEEC-CCSSCE-EEEEECTTSSEEEEEET-TSCEEEEETTTTEEEEEE--CCTTC-CSCEEEEEEC
T ss_pred CeEEEEECCCCcEEEEec-CCCCCe-EEEEEeCCCCEEEEEeC-CCeEEEEECCCCcEEEEE--cCCCc-ccceeEEEEe
Confidence 368899998876432211 111111 12233 5677777775 457899999876432221 11110 1111 22 23
Q ss_pred eCCEEEEEecCcee
Q 040145 346 CDCRVYVVGRNLHV 359 (402)
Q Consensus 346 ~~~~i~v~GG~~~~ 359 (402)
.++++++.|+.+..
T Consensus 294 ~~g~~l~~g~~d~~ 307 (354)
T 2pbi_B 294 LSGRLLFAGYNDYT 307 (354)
T ss_dssp TTSSEEEEEETTSC
T ss_pred CCCCEEEEEECCCc
Confidence 46788888876544
No 134
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.44 E-value=0.12 Score=47.56 Aligned_cols=134 Identities=7% Similarity=-0.021 Sum_probs=74.3
Q ss_pred eEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEEC
Q 040145 175 LVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLD 253 (402)
Q Consensus 175 ~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~ 253 (402)
.+.+||..+++............-.+++.. ++.++++|+. ...+.+||..++.-... +.........+..+
T Consensus 114 ~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~ 185 (401)
T 4aez_A 114 NVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLG------NGLVDIYDVESQTKLRT--MAGHQARVGCLSWN 185 (401)
T ss_dssp EEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEET------TSCEEEEETTTCCEEEE--ECCCSSCEEEEEEE
T ss_pred eEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECC------CCeEEEEECcCCeEEEE--ecCCCCceEEEEEC
Confidence 799999999876554333222222233333 5566677665 34688999987764322 22222233344446
Q ss_pred CEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCc
Q 040145 254 GKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 254 g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
+.+++.|+.+ ..+..||+....-..... ......-..+.+ ++.+++.|+. ...+.+||..+..
T Consensus 186 ~~~l~~~~~d------g~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~-d~~v~iwd~~~~~ 250 (401)
T 4aez_A 186 RHVLSSGSRS------GAIHHHDVRIANHQIGTL-QGHSSEVCGLAWRSDGLQLASGGN-DNVVQIWDARSSI 250 (401)
T ss_dssp TTEEEEEETT------SEEEEEETTSSSCEEEEE-ECCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTCSS
T ss_pred CCEEEEEcCC------CCEEEEecccCcceeeEE-cCCCCCeeEEEEcCCCCEEEEEeC-CCeEEEccCCCCC
Confidence 7777777653 378899987433111110 111111111222 6777777775 4579999998754
No 135
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=96.42 E-value=0.23 Score=43.48 Aligned_cols=189 Identities=8% Similarity=0.016 Sum_probs=96.8
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcE
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNW 234 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 234 (402)
++.||++.-. ...+++||+.++..+.... +....+++.. ++++|+.. ...+.+||+.++++
T Consensus 24 ~~~l~~~d~~-------~~~i~~~d~~~~~~~~~~~---~~~~~~i~~~~dG~l~v~~--------~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 24 SNSLLFVDIP-------AKKVCRWDSFTKQVQRVTM---DAPVSSVALRQSGGYVATI--------GTKFCALNWKEQSA 85 (297)
T ss_dssp TTEEEEEETT-------TTEEEEEETTTCCEEEEEC---SSCEEEEEEBTTSSEEEEE--------TTEEEEEETTTTEE
T ss_pred CCEEEEEECC-------CCEEEEEECCCCcEEEEeC---CCceEEEEECCCCCEEEEE--------CCeEEEEECCCCcE
Confidence 5788887643 3479999999886544321 1111233332 56666653 24689999999988
Q ss_pred EEcCCCCC--CCcceeEEEE--CCEEEEEcccccC-----CccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CC-
Q 040145 235 RTIASMGT--NMASYDAAVL--DGKLLVTEGWLWP-----FFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YE- 302 (402)
Q Consensus 235 ~~~~~~~~--~~~~~~~~~~--~g~ly~~gG~~~~-----~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~- 302 (402)
+.+..... +........+ +|++|+....... ......++.+|+. ++...+...... . ....+ ++
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~--p-ngi~~spdg~ 161 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDI--S-NGLDWSLDHK 161 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESB--E-EEEEECTTSC
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeecccc--c-cceEEcCCCC
Confidence 77654322 1122222333 6888874321110 0112367888875 333333221111 1 12222 44
Q ss_pred EEEEEeccCCcEEEEEeC--CCCceeecCC-CCCCccccCCeEEEE-eCCEEEEEecCceeeeEEEEeccccc
Q 040145 303 HLFVVSELERMKLKVYDP--STDSWETIEG-PPLPEQICKPFAVNA-CDCRVYVVGRNLHVAVGHITRLSTSE 371 (402)
Q Consensus 303 ~l~~~gg~~~~~~~~yd~--~~~~W~~~~~-~~~p~~~~~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~~~ 371 (402)
.||+.... ...|++||. .+........ ..++.......+++. .+|.|||.....+ .|.+||+..
T Consensus 162 ~lyv~~~~-~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~----~v~~~d~~t 229 (297)
T 3g4e_A 162 IFYYIDSL-SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGG----RVIRLDPVT 229 (297)
T ss_dssp EEEEEEGG-GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTT----EEEEECTTT
T ss_pred EEEEecCC-CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCC----EEEEEcCCC
Confidence 57776543 567888875 4444321110 011111112234444 4678998764322 388888753
No 136
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=96.41 E-value=0.39 Score=41.17 Aligned_cols=191 Identities=13% Similarity=0.060 Sum_probs=104.2
Q ss_pred eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEE
Q 040145 149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI--GGMIYVAGGSSADLFELDSAEV 226 (402)
Q Consensus 149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~ 226 (402)
+.+.-..++.||+.... ...++++|+.++.-+.+-... ....+.+++- ++.||+.-.. ...+.+
T Consensus 40 gi~~d~~~~~ly~~d~~-------~~~I~~~~~~g~~~~~~~~~~-~~~p~~ia~d~~~~~lyv~d~~------~~~I~~ 105 (267)
T 1npe_A 40 GLAFDCVDKVVYWTDIS-------EPSIGRASLHGGEPTTIIRQD-LGSPEGIALDHLGRTIFWTDSQ------LDRIEV 105 (267)
T ss_dssp EEEEETTTTEEEEEETT-------TTEEEEEESSSCCCEEEECTT-CCCEEEEEEETTTTEEEEEETT------TTEEEE
T ss_pred EEEEecCCCEEEEEECC-------CCEEEEEecCCCCcEEEEECC-CCCccEEEEEecCCeEEEEECC------CCEEEE
Confidence 33333336789987643 347999999876433321111 0122344443 5799998653 467889
Q ss_pred EcCCCCcEEEcCCCCCCCcce-eEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE---
Q 040145 227 LDPVKGNWRTIASMGTNMASY-DAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--- 300 (402)
Q Consensus 227 yd~~t~~W~~~~~~~~~~~~~-~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--- 300 (402)
+|+....-+.+... ..... ..++- ++.||+..... ....++++++....-..+.. .... ......+
T Consensus 106 ~~~~g~~~~~~~~~--~~~~P~~i~vd~~~g~lyv~~~~~----~~~~I~~~~~dg~~~~~~~~-~~~~-~P~gia~d~~ 177 (267)
T 1npe_A 106 AKMDGTQRRVLFDT--GLVNPRGIVTDPVRGNLYWTDWNR----DNPKIETSHMDGTNRRILAQ-DNLG-LPNGLTFDAF 177 (267)
T ss_dssp EETTSCSCEEEECS--SCSSEEEEEEETTTTEEEEEECCS----SSCEEEEEETTSCCCEEEEC-TTCS-CEEEEEEETT
T ss_pred EEcCCCCEEEEEEC--CCCCccEEEEeeCCCEEEEEECCC----CCcEEEEEecCCCCcEEEEE-CCCC-CCcEEEEcCC
Confidence 98875443333211 11122 23333 68899975321 12468888876543333221 1111 1112233
Q ss_pred CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEeccccc
Q 040145 301 YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSE 371 (402)
Q Consensus 301 ~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~ 371 (402)
+++||+.... .+.|.++|++...-..+.. . .....+++..++.||+.-...+ .|..+|+..
T Consensus 178 ~~~lyv~d~~-~~~I~~~~~~g~~~~~~~~-~----~~~P~gi~~d~~~lyva~~~~~----~v~~~d~~~ 238 (267)
T 1npe_A 178 SSQLCWVDAG-THRAECLNPAQPGRRKVLE-G----LQYPFAVTSYGKNLYYTDWKTN----SVIAMDLAI 238 (267)
T ss_dssp TTEEEEEETT-TTEEEEEETTEEEEEEEEE-C----CCSEEEEEEETTEEEEEETTTT----EEEEEETTT
T ss_pred CCEEEEEECC-CCEEEEEecCCCceEEEec-C----CCCceEEEEeCCEEEEEECCCC----eEEEEeCCC
Confidence 5788887543 6789999997643222211 1 1233566777899999765433 378887643
No 137
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=96.40 E-value=0.44 Score=41.59 Aligned_cols=112 Identities=12% Similarity=0.139 Sum_probs=61.4
Q ss_pred EEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccc-cceEEEEE---CCEEEEEcCCCCCCCCCCeeE
Q 040145 150 CVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITAR-SFFASGVI---GGMIYVAGGSSADLFELDSAE 225 (402)
Q Consensus 150 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r-~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~ 225 (402)
++++..++..++.|+.+ ..+.+||..+++.+.+..+.... .-.+++.. ++.+++.|+. -..+.
T Consensus 14 ~~~~s~~g~~las~s~D-------~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~------D~~v~ 80 (297)
T 2pm7_B 14 DAVMDYYGKRMATCSSD-------KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY------DGKVM 80 (297)
T ss_dssp EEEECTTSSEEEEEETT-------SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET------TTEEE
T ss_pred EEEECCCCCEEEEEeCC-------CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcC------CCEEE
Confidence 34444567778888763 26888998765433322222111 11223332 2566777775 35688
Q ss_pred EEcCCCCcEEEcCCCCCCCcceeEEEE--C--CEEEEEcccccCCccCCcEEEEeCCCC
Q 040145 226 VLDPVKGNWRTIASMGTNMASYDAAVL--D--GKLLVTEGWLWPFFVSPRGQVYDPSTD 280 (402)
Q Consensus 226 ~yd~~t~~W~~~~~~~~~~~~~~~~~~--~--g~ly~~gG~~~~~~~~~~~~~yd~~~~ 280 (402)
++|..++.|..+..+.........+.+ + +.+++.|+.+ ..+..||+.+.
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d------~~v~~wd~~~~ 133 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD------GKVSVVEFKEN 133 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEEBCSS
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC------CcEEEEEecCC
Confidence 899988776554333222222233333 2 5666666653 36788888765
No 138
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.39 E-value=0.0021 Score=55.79 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=39.6
Q ss_pred CCCCcHHHHHHhhccCccchhhhhhhccHhHHHhhcCchHhHHHH
Q 040145 53 IPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRR 97 (402)
Q Consensus 53 ~~~Lp~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~s~~~~~~~r 97 (402)
+..||+|++..||+.|+.++++++..|||+|+.+...+ .+.+..
T Consensus 5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~-~LWr~~ 48 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDP-ILWRYF 48 (312)
T ss_dssp HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCH-HHHHHH
T ss_pred hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccc-hHHHHH
Confidence 45799999999999999999999999999999999999 665443
No 139
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=96.37 E-value=0.21 Score=46.05 Aligned_cols=153 Identities=10% Similarity=0.049 Sum_probs=81.2
Q ss_pred EEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEc
Q 040145 150 CVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLD 228 (402)
Q Consensus 150 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd 228 (402)
++.+..++.+++.|+.+ ..+.+||..++.....-.. ....-.+++.. ++++++.|+.+ ..+.+||
T Consensus 113 ~~~~~p~~~~l~s~s~D-------g~i~vwd~~~~~~~~~l~~-h~~~V~~v~~~~~~~~l~sgs~D------~~i~iwd 178 (410)
T 1vyh_C 113 RVIFHPVFSVMVSASED-------ATIKVWDYETGDFERTLKG-HTDSVQDISFDHSGKLLASCSAD------MTIKLWD 178 (410)
T ss_dssp EEEECSSSSEEEEEESS-------SCEEEEETTTCCCCEEECC-CSSCEEEEEECTTSSEEEEEETT------SCCCEEE
T ss_pred EEEEcCCCCEEEEEeCC-------CeEEEEECCCCcEEEEEec-cCCcEEEEEEcCCCCEEEEEeCC------CeEEEEe
Confidence 44444466778888763 2689999988754321110 01111222222 46677777763 3466888
Q ss_pred CCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEE-EECCEEE
Q 040145 229 PVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSV-VVYEHLF 305 (402)
Q Consensus 229 ~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~-~~~~~l~ 305 (402)
..+..- +..+........++.+ ++..++.|+.+ ..+..||+.++.-...-. .......... .-++.++
T Consensus 179 ~~~~~~--~~~~~~h~~~V~~v~~~p~~~~l~s~s~D------~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~g~~l 249 (410)
T 1vyh_C 179 FQGFEC--IRTMHGHDHNVSSVSIMPNGDHIVSASRD------KTIKMWEVQTGYCVKTFT-GHREWVRMVRPNQDGTLI 249 (410)
T ss_dssp TTSSCE--EECCCCCSSCEEEEEECSSSSEEEEEETT------SEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSSEE
T ss_pred CCCCce--eEEEcCCCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEEEe-CCCccEEEEEECCCCCEE
Confidence 876542 2222222222233333 56666777653 368899998765322111 0111111111 2256777
Q ss_pred EEeccCCcEEEEEeCCCCcee
Q 040145 306 VVSELERMKLKVYDPSTDSWE 326 (402)
Q Consensus 306 ~~gg~~~~~~~~yd~~~~~W~ 326 (402)
+.|+. ...+.+||..+....
T Consensus 250 ~s~s~-D~~v~vwd~~~~~~~ 269 (410)
T 1vyh_C 250 ASCSN-DQTVRVWVVATKECK 269 (410)
T ss_dssp EEEET-TSCEEEEETTTCCEE
T ss_pred EEEcC-CCeEEEEECCCCcee
Confidence 77665 457888998776543
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=96.37 E-value=0.3 Score=48.55 Aligned_cols=185 Identities=8% Similarity=-0.097 Sum_probs=91.0
Q ss_pred CceEEEEECCCCceeecCCCccc-ccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCC-cEEEcCCCCCCC----c
Q 040145 173 LDLVLKYEMQKNRWTVMNKMITA-RSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKG-NWRTIASMGTNM----A 245 (402)
Q Consensus 173 ~~~~~~~d~~t~~W~~~~~~~~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~~~~~----~ 245 (402)
...++++|..+++-+.+...... .....++.. +++.++++..+.... ...+.++|..++ ..+.+....... .
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~-~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~ 312 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQN-ECKVNAYDAETGRFVRTLFVETDKHYVEPL 312 (706)
T ss_dssp EEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSC-EEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred eeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCC-eeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence 46799999998876554422111 111222322 454333333222222 457899999988 666553111110 0
Q ss_pred ceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CC-EEEEEeccCC---cEEEE
Q 040145 246 SYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YE-HLFVVSELER---MKLKV 317 (402)
Q Consensus 246 ~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~-~l~~~gg~~~---~~~~~ 317 (402)
......- +|++++.+..++ ...++.+|...+....+... .. .....+.+ ++ .||+.+..+. ..++.
T Consensus 313 ~~~~~sp~~dg~~l~~~~~~g----~~~l~~~~~~~~~~~~l~~~-~~-~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 386 (706)
T 2z3z_A 313 HPLTFLPGSNNQFIWQSRRDG----WNHLYLYDTTGRLIRQVTKG-EW-EVTNFAGFDPKGTRLYFESTEASPLERHFYC 386 (706)
T ss_dssp SCCEECTTCSSEEEEEECTTS----SCEEEEEETTSCEEEECCCS-SS-CEEEEEEECTTSSEEEEEESSSCTTCBEEEE
T ss_pred CCceeecCCCCEEEEEEccCC----ccEEEEEECCCCEEEecCCC-Ce-EEEeeeEEcCCCCEEEEEecCCCCceEEEEE
Confidence 1112233 778666554332 24678888766666666431 11 11111223 44 4555544332 48999
Q ss_pred EeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEeccc
Q 040145 318 YDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 318 yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~ 369 (402)
+|..+...+.+.. .. .........+++.+++.........+++.+|.
T Consensus 387 ~d~~~~~~~~l~~--~~---~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~ 433 (706)
T 2z3z_A 387 IDIKGGKTKDLTP--ES---GMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI 433 (706)
T ss_dssp EETTCCCCEESCC--SS---SEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred EEcCCCCceeccC--CC---ceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence 9998877665541 11 11112223456655555433232344555554
No 141
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=96.34 E-value=0.34 Score=42.37 Aligned_cols=201 Identities=15% Similarity=0.104 Sum_probs=98.8
Q ss_pred cCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCC---cccccceEEEEE-C-CEEEEEcCCCCCCCCCCeeEEEcC
Q 040145 155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKM---ITARSFFASGVI-G-GMIYVAGGSSADLFELDSAEVLDP 229 (402)
Q Consensus 155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~---~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~ 229 (402)
.++.+|+..............+++||+.+++++.+... .......+++.. + +++|+... ...+.+||+
T Consensus 27 ~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-------~~~l~~~d~ 99 (314)
T 1pjx_A 27 KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-------RLGLLVVQT 99 (314)
T ss_dssp TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-------TTEEEEEET
T ss_pred CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-------CCCEEEEeC
Confidence 46788887110000001134799999999887664320 011122333332 4 78888764 236899999
Q ss_pred CCCcEEEc-CCCCCC--CcceeEEEE--CCEEEEEccccc---------CCccCCcEEEEeCCCCCeeeccccccCCCce
Q 040145 230 VKGNWRTI-ASMGTN--MASYDAAVL--DGKLLVTEGWLW---------PFFVSPRGQVYDPSTDNWESMAVGLREGWTG 295 (402)
Q Consensus 230 ~t~~W~~~-~~~~~~--~~~~~~~~~--~g~ly~~gG~~~---------~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~ 295 (402)
. ++...+ ...... ......... +|.+|+...... .......++.||+. ++...+....... .+
T Consensus 100 ~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~-~~ 176 (314)
T 1pjx_A 100 D-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFP-NG 176 (314)
T ss_dssp T-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSE-EE
T ss_pred C-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCc-ce
Confidence 8 777665 332211 111223333 678888654320 00112368899987 6555443211111 12
Q ss_pred eEEE----ECC-EEEEEeccCCcEEEEEeCC-CCceeecCCC-CCCccc-cCCeEEEE-eCCEEEEEecCceeeeEEEEe
Q 040145 296 SSVV----VYE-HLFVVSELERMKLKVYDPS-TDSWETIEGP-PLPEQI-CKPFAVNA-CDCRVYVVGRNLHVAVGHITR 366 (402)
Q Consensus 296 ~~~~----~~~-~l~~~gg~~~~~~~~yd~~-~~~W~~~~~~-~~p~~~-~~~~~~~~-~~~~i~v~GG~~~~~~~~v~~ 366 (402)
.+.. -++ .+|+... ....+++||++ +.+....... .++... ....+++. .+|.||+.....+ .|..
T Consensus 177 i~~~~~~d~dg~~l~v~~~-~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~----~i~~ 251 (314)
T 1pjx_A 177 IAVRHMNDGRPYQLIVAET-PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS----HIEV 251 (314)
T ss_dssp EEEEECTTSCEEEEEEEET-TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT----EEEE
T ss_pred EEEecccCCCCCEEEEEEC-CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC----EEEE
Confidence 2223 234 4666543 35689999876 3433211100 111110 11223333 4678888753322 3777
Q ss_pred cccc
Q 040145 367 LSTS 370 (402)
Q Consensus 367 ~~~~ 370 (402)
||+.
T Consensus 252 ~d~~ 255 (314)
T 1pjx_A 252 FGPD 255 (314)
T ss_dssp ECTT
T ss_pred EcCC
Confidence 7765
No 142
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=96.33 E-value=0.04 Score=51.44 Aligned_cols=146 Identities=10% Similarity=0.057 Sum_probs=77.6
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCC-cccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCC
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKM-ITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKG 232 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~-~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 232 (402)
++.+++.|+.+ ..+.+||..++.-..+-.+ .....-.++... ++.+++.|+.+ ..+.+||..++
T Consensus 131 ~~~~lasGs~d-------g~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D------~~v~iwd~~~~ 197 (435)
T 4e54_B 131 HPSTVAVGSKG-------GDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME------GTTRLQDFKGN 197 (435)
T ss_dssp CTTCEEEEETT-------SCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS------SCEEEEETTSC
T ss_pred CCCEEEEEeCC-------CEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC------CEEEEeeccCC
Confidence 44577777753 2688999887754332222 122222344443 45666677653 45788999887
Q ss_pred cEEEcCCCCCCCc-ceeEEE-ECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--C-CEEEEE
Q 040145 233 NWRTIASMGTNMA-SYDAAV-LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--Y-EHLFVV 307 (402)
Q Consensus 233 ~W~~~~~~~~~~~-~~~~~~-~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~-~~l~~~ 307 (402)
.-..+........ ..+... -++.+++.|+.+ ..+..||+....-..+.. ..... .++.+ + ..+++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d------g~i~~wd~~~~~~~~~~~--h~~~v-~~v~~~p~~~~~~~s 268 (435)
T 4e54_B 198 ILRVFASSDTINIWFCSLDVSASSRMVVTGDNV------GNVILLNMDGKELWNLRM--HKKKV-THVALNPCCDWFLAT 268 (435)
T ss_dssp EEEEEECCSSCSCCCCCEEEETTTTEEEEECSS------SBEEEEESSSCBCCCSBC--CSSCE-EEEEECTTCSSEEEE
T ss_pred ceeEEeccCCCCccEEEEEECCCCCEEEEEeCC------CcEeeeccCcceeEEEec--ccceE-EeeeecCCCceEEEE
Confidence 6655433222211 122222 367787887753 368889986543222211 01111 12333 3 346666
Q ss_pred eccCCcEEEEEeCCCCc
Q 040145 308 SELERMKLKVYDPSTDS 324 (402)
Q Consensus 308 gg~~~~~~~~yd~~~~~ 324 (402)
|+. ...+.+||..+..
T Consensus 269 ~s~-d~~v~iwd~~~~~ 284 (435)
T 4e54_B 269 ASV-DQTVKIWDLRQVR 284 (435)
T ss_dssp EET-TSBCCEEETTTCC
T ss_pred ecC-cceeeEEeccccc
Confidence 665 4568888887643
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=96.32 E-value=0.15 Score=44.99 Aligned_cols=141 Identities=13% Similarity=0.102 Sum_probs=69.7
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcc----
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMIT---- 194 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~---- 194 (402)
.+.++|+.+.+....-..+... .....+++..++ .+|+.+.. ...+.+||+.+++-...-..+.
T Consensus 12 ~v~~~d~~~~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~v~~~~-------~~~v~~~d~~~~~~~~~~~~~~~~~~ 80 (337)
T 1pby_B 12 KLVVIDTEKMAVDKVITIADAG----PTPMVPMVAPGGRIAYATVNK-------SESLVKIDLVTGETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEETTTTEEEEEEECTTCT----TCCCCEEECTTSSEEEEEETT-------TTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred eEEEEECCCCcEEEEEEcCCCC----CCccceEEcCCCCEEEEEeCC-------CCeEEEEECCCCCeEeeEEcCCcccc
Confidence 4788998887654322222100 001122332344 77877653 2479999999886433111111
Q ss_pred cccceEEEEE-CC-EEEEEcCC---CCCCC--CCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE-CCE-EEEEcccccC
Q 040145 195 ARSFFASGVI-GG-MIYVAGGS---SADLF--ELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL-DGK-LLVTEGWLWP 265 (402)
Q Consensus 195 ~r~~~~~~~~-~~-~iyv~GG~---~~~~~--~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~-ly~~gG~~~~ 265 (402)
......++.. ++ .+|+.... ..... ....+.+||..+.+....-... ......+.. +|+ ||+..
T Consensus 81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~----- 153 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP--RQITMLAWARDGSKLYGLG----- 153 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC--SSCCCEEECTTSSCEEEES-----
T ss_pred cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC--CCcceeEECCCCCEEEEeC-----
Confidence 0012223332 33 67776411 00000 1367999999887654321111 111222222 555 66652
Q ss_pred CccCCcEEEEeCCCCCe
Q 040145 266 FFVSPRGQVYDPSTDNW 282 (402)
Q Consensus 266 ~~~~~~~~~yd~~~~~W 282 (402)
..+.+||+.+++-
T Consensus 154 ----~~i~~~d~~~~~~ 166 (337)
T 1pby_B 154 ----RDLHVMDPEAGTL 166 (337)
T ss_dssp ----SSEEEEETTTTEE
T ss_pred ----CeEEEEECCCCcE
Confidence 2688999987654
No 144
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=96.30 E-value=0.94 Score=44.48 Aligned_cols=239 Identities=13% Similarity=0.037 Sum_probs=119.3
Q ss_pred ceeEEEeecC--C-CcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCC---CCCCCceEEEEECCC------Cc
Q 040145 118 KIQWQVLDLT--H-YCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSD---VDCPLDLVLKYEMQK------NR 185 (402)
Q Consensus 118 ~~~~~~~d~~--~-~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~---~~~~~~~~~~~d~~t------~~ 185 (402)
..+++.++.. . .....+...+... ........+...+|+.+++...+.. ......+++++|..+ +.
T Consensus 101 ~~~l~~~~~~~~g~~~~~~l~~~~~~~--~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 178 (662)
T 3azo_A 101 DQRLYAFEPDAPGGAVPRPLTPVSAVG--GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA 178 (662)
T ss_dssp TCCEEEECTTSTTCCCCEECSCCCCST--TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG
T ss_pred CCeEEEEcCCCCCCCCCEeccCCccCC--CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc
Confidence 3457888876 3 5555555432100 0012333444445544444433210 012346899999988 66
Q ss_pred eeecC-CCcccccceEEEE-ECCE-EEEEcCCCCCC-CCCCeeEEEcCC-CC---cEEEcCCCCCCCcceeEEEE--CCE
Q 040145 186 WTVMN-KMITARSFFASGV-IGGM-IYVAGGSSADL-FELDSAEVLDPV-KG---NWRTIASMGTNMASYDAAVL--DGK 255 (402)
Q Consensus 186 W~~~~-~~~~~r~~~~~~~-~~~~-iyv~GG~~~~~-~~~~~~~~yd~~-t~---~W~~~~~~~~~~~~~~~~~~--~g~ 255 (402)
-+.+. .-. ......+. -+++ |++........ .....++++|.. ++ ..+.+..-. ......... +|+
T Consensus 179 ~~~l~~~~~--~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~--~~~~~~~~~spdg~ 254 (662)
T 3azo_A 179 VRELSDDAH--RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP--EEAIAQAEWAPDGS 254 (662)
T ss_dssp SEESSCSCS--SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET--TBCEEEEEECTTSC
T ss_pred eeEEEecCC--CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC--CceEcceEECCCCe
Confidence 55554 211 11111222 2444 44443221111 113579999998 56 333332111 111222222 788
Q ss_pred EEEEcccccCCccCCcEEEEeCCCCCeeeccccccCC----C---ceeEEEE-CCEEEEEeccCCcEEEEEeCCCCceee
Q 040145 256 LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREG----W---TGSSVVV-YEHLFVVSELERMKLKVYDPSTDSWET 327 (402)
Q Consensus 256 ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~----~---~~~~~~~-~~~l~~~gg~~~~~~~~yd~~~~~W~~ 327 (402)
+|+.+...+ ...++.+|+.++++..+....... + ....+.. ++++++.+......++.+|..+.....
T Consensus 255 l~~~~~~~~----~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 330 (662)
T 3azo_A 255 LIVATDRTG----WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGELVD 330 (662)
T ss_dssp EEEEECTTS----SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTEEEE
T ss_pred EEEEECCCC----CeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCcEEE
Confidence 887765432 237899999888888775411111 1 1112232 677777665444578888998887766
Q ss_pred cCCCCCCccccCCeEE-EEeCCEEEEEecCceeeeEEEEecccccc
Q 040145 328 IEGPPLPEQICKPFAV-NACDCRVYVVGRNLHVAVGHITRLSTSEK 372 (402)
Q Consensus 328 ~~~~~~p~~~~~~~~~-~~~~~~i~v~GG~~~~~~~~v~~~~~~~~ 372 (402)
+.. +. .....+ ...++.+++..+... ...+++.+|....
T Consensus 331 l~~---~~--~~~~~~~s~~~~~~~~~~~~~~-~~~~i~~~d~~~g 370 (662)
T 3azo_A 331 AAG---PW--TEWAATLTVSGTRAVGVAASPR-TAYEVVELDTVTG 370 (662)
T ss_dssp CCS---SC--CEEEEEEEEETTEEEEEEEETT-EEEEEEEEETTTC
T ss_pred ecC---CC--CeEEEEEecCCCEEEEEEcCCC-CCCEEEEEECCCC
Confidence 642 21 111233 345667766655332 2356777765433
No 145
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=96.29 E-value=0.24 Score=44.13 Aligned_cols=185 Identities=8% Similarity=0.009 Sum_probs=89.7
Q ss_pred eEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCc
Q 040145 106 WLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNR 185 (402)
Q Consensus 106 ~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~ 185 (402)
.+++.++.+. .+.+||..+........+.... ....++.+..++..++.|+.+ ..+.+||..+++
T Consensus 55 ~~l~~~~~dg----~i~iw~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~s~~~d-------g~v~iwd~~~~~ 119 (368)
T 3mmy_A 55 NFLIAGSWAN----DVRCWEVQDSGQTIPKAQQMHT----GPVLDVCWSDDGSKVFTASCD-------KTAKMWDLSSNQ 119 (368)
T ss_dssp EEEEEEETTS----EEEEEEECTTSCEEEEEEEECS----SCEEEEEECTTSSEEEEEETT-------SEEEEEETTTTE
T ss_pred eEEEEECCCC----cEEEEEcCCCCceeEEEecccc----CCEEEEEECcCCCEEEEEcCC-------CcEEEEEcCCCC
Confidence 5555554332 3677777652221111111000 223344444466667777652 279999999887
Q ss_pred eeecCCCcccccceEEEE---ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEccc
Q 040145 186 WTVMNKMITARSFFASGV---IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGW 262 (402)
Q Consensus 186 W~~~~~~~~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~ 262 (402)
...+.. ....-.++.. -++.+++.|+. ...+.+||..++.-... +...............+++.++.
T Consensus 120 ~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 189 (368)
T 3mmy_A 120 AIQIAQ--HDAPVKTIHWIKAPNYSCVMTGSW------DKTLKFWDTRSSNPMMV--LQLPERCYCADVIYPMAVVATAE 189 (368)
T ss_dssp EEEEEE--CSSCEEEEEEEECSSCEEEEEEET------TSEEEEECSSCSSCSEE--EECSSCEEEEEEETTEEEEEEGG
T ss_pred ceeecc--ccCceEEEEEEeCCCCCEEEEccC------CCcEEEEECCCCcEEEE--EecCCCceEEEecCCeeEEEeCC
Confidence 554322 1111222332 25677777775 45688999887642111 11111222233334544443332
Q ss_pred ccCCccCCcEEEEeCCCCC--eeeccccccCCCceeEEEECC----EEEEEeccCCcEEEEEeCCCC
Q 040145 263 LWPFFVSPRGQVYDPSTDN--WESMAVGLREGWTGSSVVVYE----HLFVVSELERMKLKVYDPSTD 323 (402)
Q Consensus 263 ~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~----~l~~~gg~~~~~~~~yd~~~~ 323 (402)
..+..||..... +..+............+..+. ..++.|+. ...+.+||....
T Consensus 190 -------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dg~i~i~~~~~~ 248 (368)
T 3mmy_A 190 -------RGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI-EGRVAIHYINPP 248 (368)
T ss_dssp -------GCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET-TSEEEEEESSCS
T ss_pred -------CcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC-CCcEEEEecCCC
Confidence 367888887653 333332222211111122222 22555554 567888888765
No 146
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.25 E-value=0.0026 Score=57.35 Aligned_cols=42 Identities=26% Similarity=0.412 Sum_probs=37.9
Q ss_pred CCCCCCCCcHHHHHHhhccCccchhhhhhhccHhHHHhhcCc
Q 040145 49 AEPFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNK 90 (402)
Q Consensus 49 ~~~~~~~Lp~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~s~ 90 (402)
....|..||+|++.+|+.+|+..++.++..|||+|+.+...|
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~ 46 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE 46 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCS
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCc
Confidence 355789999999999999999999999999999999999777
No 147
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.24 Score=45.21 Aligned_cols=220 Identities=8% Similarity=0.003 Sum_probs=105.1
Q ss_pred eeEEEeecCCCcEE-eCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCC--ceeecCCCcc-
Q 040145 119 IQWQVLDLTHYCWH-TIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKN--RWTVMNKMIT- 194 (402)
Q Consensus 119 ~~~~~~d~~~~~W~-~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~--~W~~~~~~~~- 194 (402)
..+.+||..+..-. .+..... .....++....++.+++.|+.+ ..+.+||..+. ..+.+..+..
T Consensus 45 ~~v~iw~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~d-------g~v~vw~~~~~~~~~~~~~~~~~h 112 (416)
T 2pm9_A 45 SSLELWSLLAADSEKPIASLQV-----DSKFNDLDWSHNNKIIAGALDN-------GSLELYSTNEANNAINSMARFSNH 112 (416)
T ss_dssp CCCEEEESSSGGGCSCSCCCCC-----SSCEEEEEECSSSSCEEEEESS-------SCEEEECCSSTTSCCCEEEECCCS
T ss_pred CeEEEEEccCCCCCcEEEEEec-----CCceEEEEECCCCCeEEEEccC-------CeEEEeecccccccccchhhccCC
Confidence 35778887765432 1211221 1234445554567777777652 26888998772 1112111111
Q ss_pred cccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCc------EE-EcCCCCCCCcceeEEEE--C-CEEEEEccc
Q 040145 195 ARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGN------WR-TIASMGTNMASYDAAVL--D-GKLLVTEGW 262 (402)
Q Consensus 195 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~------W~-~~~~~~~~~~~~~~~~~--~-g~ly~~gG~ 262 (402)
...-.++... ++.+++.|+. ...+.+||..+.. -. .+............+.+ + +.+++.|+.
T Consensus 113 ~~~v~~~~~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 186 (416)
T 2pm9_A 113 SSSVKTVKFNAKQDNVLASGGN------NGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS 186 (416)
T ss_dssp SSCCCEEEECSSSTTBEEEECS------SSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESS
T ss_pred ccceEEEEEcCCCCCEEEEEcC------CCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcC
Confidence 1112233333 2567777765 3458888988764 11 11111111112222333 3 567777765
Q ss_pred ccCCccCCcEEEEeCCCCCeeecccccc-C---CCceeEEEE--CC-EEEEEeccCC--cEEEEEeCCCCceeecCCCCC
Q 040145 263 LWPFFVSPRGQVYDPSTDNWESMAVGLR-E---GWTGSSVVV--YE-HLFVVSELER--MKLKVYDPSTDSWETIEGPPL 333 (402)
Q Consensus 263 ~~~~~~~~~~~~yd~~~~~W~~~~~~~~-~---~~~~~~~~~--~~-~l~~~gg~~~--~~~~~yd~~~~~W~~~~~~~~ 333 (402)
+ ..+.+||+.+.+-...-.... . ...-..+.+ ++ .+++.|+.+. ..+.+||..+..- .+. .+
T Consensus 187 d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-~~~--~~ 257 (416)
T 2pm9_A 187 S------NFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-PLQ--TL 257 (416)
T ss_dssp S------SCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-CSB--CC
T ss_pred C------CCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-CcE--Ee
Confidence 3 368999998765432211111 0 111112233 33 5666666532 2788999986431 111 11
Q ss_pred C-ccccCCeEEEE-e-CCEEEEEecCceeeeEEEEeccc
Q 040145 334 P-EQICKPFAVNA-C-DCRVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 334 p-~~~~~~~~~~~-~-~~~i~v~GG~~~~~~~~v~~~~~ 369 (402)
. .......++.. . ++.+++.|+.+.. +..+|.
T Consensus 258 ~~~~~~~v~~~~~s~~~~~~l~s~~~dg~----v~~wd~ 292 (416)
T 2pm9_A 258 NQGHQKGILSLDWCHQDEHLLLSSGRDNT----VLLWNP 292 (416)
T ss_dssp CSCCSSCEEEEEECSSCSSCEEEEESSSE----EEEECS
T ss_pred ecCccCceeEEEeCCCCCCeEEEEeCCCC----EEEeeC
Confidence 1 11111223333 2 6778888876543 444543
No 148
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=96.24 E-value=0.47 Score=41.89 Aligned_cols=207 Identities=8% Similarity=0.012 Sum_probs=99.7
Q ss_pred eEEEeec-CCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCc-------eeecCC
Q 040145 120 QWQVLDL-THYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNR-------WTVMNK 191 (402)
Q Consensus 120 ~~~~~d~-~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~-------W~~~~~ 191 (402)
.+.+||. .+.....+...... ....++.+.. +.+++.|+.+ ..+.+||..+.. .+.+..
T Consensus 80 ~i~~wd~~~~~~~~~~~~~~~~-----~~v~~l~~~~-~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~ 146 (342)
T 1yfq_A 80 EILKVDLIGSPSFQALTNNEAN-----LGICRICKYG-DDKLIAASWD-------GLIEVIDPRNYGDGVIAVKNLNSNN 146 (342)
T ss_dssp CEEEECSSSSSSEEECBSCCCC-----SCEEEEEEET-TTEEEEEETT-------SEEEEECHHHHTTBCEEEEESCSSS
T ss_pred eEEEEEeccCCceEeccccCCC-----CceEEEEeCC-CCEEEEEcCC-------CeEEEEcccccccccccccCCeeeE
Confidence 3788898 77766555431100 2223333323 5566666652 268889876510 122222
Q ss_pred CcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCC-Cc--EEEcCCCCCCCcceeEEEE--CCEEEEEcccccCC
Q 040145 192 MITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVK-GN--WRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPF 266 (402)
Q Consensus 192 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t-~~--W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~ 266 (402)
+.....-.++....+. +++|+. ...+.+||..+ .. ...... +........... ++.+++.|+.+
T Consensus 147 ~~~~~~v~~~~~~~~~-l~~~~~------d~~i~i~d~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~d--- 215 (342)
T 1yfq_A 147 TKVKNKIFTMDTNSSR-LIVGMN------NSQVQWFRLPLCEDDNGTIEES-GLKYQIRDVALLPKEQEGYACSSID--- 215 (342)
T ss_dssp SSSCCCEEEEEECSSE-EEEEES------TTEEEEEESSCCTTCCCEEEEC-SCSSCEEEEEECSGGGCEEEEEETT---
T ss_pred EeeCCceEEEEecCCc-EEEEeC------CCeEEEEECCccccccceeeec-CCCCceeEEEECCCCCCEEEEEecC---
Confidence 2222233344445556 555543 45788999887 33 222111 111111222222 46777777653
Q ss_pred ccCCcEEEEeCCCC------C-eeecccccc--C----CCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCCC
Q 040145 267 FVSPRGQVYDPSTD------N-WESMAVGLR--E----GWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEGP 331 (402)
Q Consensus 267 ~~~~~~~~yd~~~~------~-W~~~~~~~~--~----~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~ 331 (402)
..+.+||.... + -..+..... . ...-..+.+ ++++++.|+. ...+.+||..+.+-...
T Consensus 216 ---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~--- 288 (342)
T 1yfq_A 216 ---GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS-DGIISCWNLQTRKKIKN--- 288 (342)
T ss_dssp ---SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET-TSCEEEEETTTTEEEEE---
T ss_pred ---CcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecC-CceEEEEcCccHhHhhh---
Confidence 24666665443 1 111111000 0 001112233 5666666665 45799999987653322
Q ss_pred CCCcc-ccCCeEEEEeCCEEEEEecCcee
Q 040145 332 PLPEQ-ICKPFAVNACDCRVYVVGRNLHV 359 (402)
Q Consensus 332 ~~p~~-~~~~~~~~~~~~~i~v~GG~~~~ 359 (402)
+... ...-.+++ .++++++.|+.+..
T Consensus 289 -~~~~h~~~v~~~~-~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 289 -FAKFNEDSVVKIA-CSDNILCLATSDDT 315 (342)
T ss_dssp -CCCCSSSEEEEEE-ECSSEEEEEEECTH
T ss_pred -hhcccCCCceEec-CCCCeEEEEecCCc
Confidence 2211 12223444 78888888876543
No 149
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.22 E-value=0.13 Score=51.96 Aligned_cols=182 Identities=8% Similarity=-0.058 Sum_probs=89.1
Q ss_pred EEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEc
Q 040145 150 CVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLD 228 (402)
Q Consensus 150 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd 228 (402)
++++..++..+++|+. ...+.+||..+++....-.. ....-.+++.. +++.+++|+. ...+.+||
T Consensus 18 ~i~~sp~~~~la~~~~-------~g~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~------dg~i~vw~ 83 (814)
T 3mkq_A 18 GIDFHPTEPWVLTTLY-------SGRVEIWNYETQVEVRSIQV-TETPVRAGKFIARKNWIIVGSD------DFRIRVFN 83 (814)
T ss_dssp EEEECSSSSEEEEEET-------TSEEEEEETTTTEEEEEEEC-CSSCEEEEEEEGGGTEEEEEET------TSEEEEEE
T ss_pred EEEECCCCCEEEEEeC-------CCEEEEEECCCCceEEEEec-CCCcEEEEEEeCCCCEEEEEeC------CCeEEEEE
Confidence 3344345666666664 23799999988754331111 11111222222 4556666665 45789999
Q ss_pred CCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEE-E--CCE
Q 040145 229 PVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVV-V--YEH 303 (402)
Q Consensus 229 ~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~-~--~~~ 303 (402)
..++.....- .........+.+ ++..++.|+.+ ..+.+||..++ |............-..+. . ++.
T Consensus 84 ~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~ 154 (814)
T 3mkq_A 84 YNTGEKVVDF--EAHPDYIRSIAVHPTKPYVLSGSDD------LTVKLWNWENN-WALEQTFEGHEHFVMCVAFNPKDPS 154 (814)
T ss_dssp TTTCCEEEEE--ECCSSCEEEEEECSSSSEEEEEETT------SEEEEEEGGGT-SEEEEEEECCSSCEEEEEEETTEEE
T ss_pred CCCCcEEEEE--ecCCCCEEEEEEeCCCCEEEEEcCC------CEEEEEECCCC-ceEEEEEcCCCCcEEEEEEEcCCCC
Confidence 9887653321 111111222222 56666666542 36889998765 222211111111111222 2 456
Q ss_pred EEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE-e--CCEEEEEecCce
Q 040145 304 LFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA-C--DCRVYVVGRNLH 358 (402)
Q Consensus 304 l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~--~~~i~v~GG~~~ 358 (402)
++++|+. ...+.+||..+..-.... ..... .....+.. . ++.+++.|+.+.
T Consensus 155 ~l~~~~~-dg~v~vwd~~~~~~~~~~--~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg 208 (814)
T 3mkq_A 155 TFASGCL-DRTVKVWSLGQSTPNFTL--TTGQE-RGVNYVDYYPLPDKPYMITASDDL 208 (814)
T ss_dssp EEEEEET-TSEEEEEETTCSSCSEEE--ECCCT-TCCCEEEECCSTTCCEEEEECTTS
T ss_pred EEEEEeC-CCeEEEEECCCCcceeEE--ecCCC-CCEEEEEEEECCCCCEEEEEeCCC
Confidence 6766665 457999998654322211 01110 11122222 2 677777777554
No 150
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=96.20 E-value=1.1 Score=44.42 Aligned_cols=255 Identities=8% Similarity=0.005 Sum_probs=127.1
Q ss_pred CCCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECC
Q 040145 103 KDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQ 182 (402)
Q Consensus 103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~ 182 (402)
.+.++|.+..+.......+++.+.....|..+..................+..+|+.+++...... .....++++|..
T Consensus 78 dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G--~~~~~i~v~dl~ 155 (695)
T 2bkl_A 78 RNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNA--ADEAVLHVIDVD 155 (695)
T ss_dssp ETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETT--CSCCEEEEEETT
T ss_pred ECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCC--CceEEEEEEECC
Confidence 366777766544433455677777777777664432110000012344455556665555432111 123489999999
Q ss_pred CCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCC-------CCCCeeEEEcCCCCcE--EEcCCCCCCC-cceeEE-
Q 040145 183 KNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADL-------FELDSAEVLDPVKGNW--RTIASMGTNM-ASYDAA- 250 (402)
Q Consensus 183 t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~-------~~~~~~~~yd~~t~~W--~~~~~~~~~~-~~~~~~- 250 (402)
+++......++.... ...+.. +++.++++..+... .....+++++..++.- ..+-..+... ......
T Consensus 156 tg~~~~~~~~~~~~~-~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~ 234 (695)
T 2bkl_A 156 SGEWSKVDVIEGGKY-ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL 234 (695)
T ss_dssp TCCBCSSCCBSCCTT-CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE
T ss_pred CCCCcCCcccCcccc-cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE
Confidence 998651111221111 223333 44444444432210 1134588888887652 2232222221 122222
Q ss_pred EECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccC--CcEEEEEeCCCCc---e
Q 040145 251 VLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELE--RMKLKVYDPSTDS---W 325 (402)
Q Consensus 251 ~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~--~~~~~~yd~~~~~---W 325 (402)
.-+|+..++....+. ....++.+|..++.|..+..... ... ..+..+|.+|+....+ ...++.+|.++.. |
T Consensus 235 SpDG~~l~~~~~~~~--~~~~l~~~~~~~~~~~~l~~~~~-~~~-~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~ 310 (695)
T 2bkl_A 235 SRDGKYLFVYILRGW--SENDVYWKRPGEKDFRLLVKGVG-AKY-EVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASW 310 (695)
T ss_dssp CTTSCCEEEEEEETT--TEEEEEEECTTCSSCEEEEECSS-CCE-EEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGC
T ss_pred CCCCCEEEEEEeCCC--CceEEEEEcCCCCceEEeecCCC-ceE-EEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCC
Confidence 226665454443221 12367788877778887764222 111 2233566666554322 4689999997654 8
Q ss_pred eecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEeccc
Q 040145 326 ETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 326 ~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~ 369 (402)
..+-. .-+. .....+...+++|++....+. ...++.++.
T Consensus 311 ~~l~~-~~~~--~~l~~~~~~~~~lv~~~~~dg--~~~l~~~~~ 349 (695)
T 2bkl_A 311 KEIVP-EDSS--ASLLSVSIVGGHLSLEYLKDA--TSEVRVATL 349 (695)
T ss_dssp EEEEC-CCSS--CEEEEEEEETTEEEEEEEETT--EEEEEEEET
T ss_pred eEEec-CCCC--CeEEEEEEECCEEEEEEEECC--EEEEEEEeC
Confidence 87652 1111 111234445888887765433 244666654
No 151
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.20 E-value=1.1 Score=44.37 Aligned_cols=119 Identities=15% Similarity=0.170 Sum_probs=67.9
Q ss_pred CCCeEEEEEEeCCCCceeEEEeecCCCc--EEeCCCCCCCCC---CC-CCCceEEEEccCCEEEEEeCccCCCCCCCceE
Q 040145 103 KDPWLFVFAFHKCTGKIQWQVLDLTHYC--WHTIPAMPCKDK---VC-PHGFRCVSIPREGTLFVCGGMVSDVDCPLDLV 176 (402)
Q Consensus 103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~--W~~l~~~~~~~~---~~-~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~ 176 (402)
.++.+|+... ...++++|..+.+ |+.-...+.... .+ ....+.+. .++.||+... ...+
T Consensus 76 ~~g~vyv~~~-----~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~--------dg~l 140 (677)
T 1kb0_A 76 VDGIMYVSAS-----WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAW--------DGRL 140 (677)
T ss_dssp ETTEEEEECG-----GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECT--------TSEE
T ss_pred ECCEEEEECC-----CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcC--------CCEE
Confidence 4777887653 2358999998876 876433221000 00 01112233 3788888642 2379
Q ss_pred EEEECCCCc--eeecCC-C-cc-cccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEc
Q 040145 177 LKYEMQKNR--WTVMNK-M-IT-ARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTI 237 (402)
Q Consensus 177 ~~~d~~t~~--W~~~~~-~-~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~ 237 (402)
+.+|..|++ |+.-.. - .. .......++.++.+|+..+..+... ...+..||..|++ |+.-
T Consensus 141 ~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~-~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 141 IALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGV-RGYITAYDAETGERKWRWF 207 (677)
T ss_dssp EEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCC-BCEEEEEETTTCCEEEEEE
T ss_pred EEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCC-CCEEEEEECCCCcEEEEec
Confidence 999999985 876322 1 11 1122234556888887654322222 5679999999876 8753
No 152
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=96.20 E-value=0.43 Score=43.60 Aligned_cols=157 Identities=10% Similarity=0.043 Sum_probs=82.3
Q ss_pred eEEEEcc-CCEEEEEeCccCCCCCCCceEEEEECCCCceee-----cCCCccc-ccceEEEEE-CC-EEEEEcCCCCCCC
Q 040145 149 RCVSIPR-EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTV-----MNKMITA-RSFFASGVI-GG-MIYVAGGSSADLF 219 (402)
Q Consensus 149 ~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~-----~~~~~~~-r~~~~~~~~-~~-~iyv~GG~~~~~~ 219 (402)
.++.+.. ++.+++.|+.+ ..+.+||..++.... +..+... ..-..+... ++ .+++.|+.
T Consensus 85 ~~~~~~p~~~~~l~s~s~d-------g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~----- 152 (402)
T 2aq5_A 85 LDIAWCPHNDNVIASGSED-------CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC----- 152 (402)
T ss_dssp EEEEECTTCTTEEEEEETT-------SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET-----
T ss_pred EEEEeCCCCCCEEEEEeCC-------CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC-----
Confidence 3344433 66777777752 279999998875422 1111111 111223333 22 46777765
Q ss_pred CCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeecc-ccccCCCcee
Q 040145 220 ELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMA-VGLREGWTGS 296 (402)
Q Consensus 220 ~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~~~~~~ 296 (402)
...+.+||..++.....-...........+.+ ++.+++.|+.+ ..+.+||+.+++-...- ..........
T Consensus 153 -dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 225 (402)
T 2aq5_A 153 -DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD------KRVRVIEPRKGTVVAEKDRPHEGTRPVH 225 (402)
T ss_dssp -TSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT------SEEEEEETTTTEEEEEEECSSCSSSCCE
T ss_pred -CCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC------CcEEEEeCCCCceeeeeccCCCCCcceE
Confidence 34688999988765432110111122223333 67777777643 37899999876532221 1111111112
Q ss_pred E-EEECCEEEEEec--cCCcEEEEEeCCCCc
Q 040145 297 S-VVVYEHLFVVSE--LERMKLKVYDPSTDS 324 (402)
Q Consensus 297 ~-~~~~~~l~~~gg--~~~~~~~~yd~~~~~ 324 (402)
. ..-+++++++|. .....+.+||..+..
T Consensus 226 ~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 226 AVFVSEGKILTTGFSRMSERQVALWDTKHLE 256 (402)
T ss_dssp EEECSTTEEEEEEECTTCCEEEEEEETTBCS
T ss_pred EEEcCCCcEEEEeccCCCCceEEEEcCcccc
Confidence 2 233677777762 235689999997643
No 153
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=96.18 E-value=0.5 Score=46.51 Aligned_cols=194 Identities=13% Similarity=0.035 Sum_probs=105.0
Q ss_pred ceeEEEeecCC------CcEEeCC-CCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCC-CCCceEEEEECC-CCceee
Q 040145 118 KIQWQVLDLTH------YCWHTIP-AMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVD-CPLDLVLKYEMQ-KNRWTV 188 (402)
Q Consensus 118 ~~~~~~~d~~~------~~W~~l~-~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~-~~~~~~~~~d~~-t~~W~~ 188 (402)
..+++.+|..+ .....+. .-. .......+..+|+.+++...+.... -...+++++|.. ++++..
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~ 232 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAVRELSDDAH-------RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD 232 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGSEESSCSCS-------SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred eeEEEEEECCCCccccCCceeEEEecCC-------CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence 35788899887 6655554 211 1112223334665444443322110 023589999998 573322
Q ss_pred cCCCccc--ccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCc-------ceeEEEE-CCEEE
Q 040145 189 MNKMITA--RSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMA-------SYDAAVL-DGKLL 257 (402)
Q Consensus 189 ~~~~~~~--r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~-------~~~~~~~-~g~ly 257 (402)
...+... ......... ++++|+.+..++ ...++.+|..++.++.+........ ....+.. +++++
T Consensus 233 ~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~----~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~ 308 (662)
T 3azo_A 233 TRTLLGGPEEAIAQAEWAPDGSLIVATDRTG----WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIA 308 (662)
T ss_dssp EEEEEEETTBCEEEEEECTTSCEEEEECTTS----SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEE
T ss_pred cEEeCCCCCceEcceEECCCCeEEEEECCCC----CeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEE
Confidence 2222211 122233333 667777766532 3479999998888988754322110 1123333 67787
Q ss_pred EEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccC--CcEEEEEeCCCCceeecC
Q 040145 258 VTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELE--RMKLKVYDPSTDSWETIE 329 (402)
Q Consensus 258 ~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~--~~~~~~yd~~~~~W~~~~ 329 (402)
+.+.. + ...++.+|..++....+... ....... ..-++.++++.+.. ...++.+|..+.+.+.+.
T Consensus 309 ~~~~~-~----~~~l~~~d~~~~~~~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~ 376 (662)
T 3azo_A 309 VVHGK-G----AAVLGILDPESGELVDAAGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIG 376 (662)
T ss_dssp EEEBS-S----SCEEEEEETTTTEEEECCSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred EEEEc-C----ccEEEEEECCCCcEEEecCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEee
Confidence 77653 2 24688889888777766532 1111122 23355666554432 347888999888877664
No 154
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=96.17 E-value=1.2 Score=44.54 Aligned_cols=249 Identities=8% Similarity=0.011 Sum_probs=120.1
Q ss_pred CCeEEEEEEe-CCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCC-------CCCCCce
Q 040145 104 DPWLFVFAFH-KCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSD-------VDCPLDL 175 (402)
Q Consensus 104 ~~~l~~~gg~-~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~-------~~~~~~~ 175 (402)
++..+++..+ .+.....++++|..+++..... .+ . ..+...+...+..|++.. .+.. .......
T Consensus 173 DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~--~----~~~~~~~wspD~~l~~~~-~~~~~~~~~~~~~~~~~~ 244 (741)
T 1yr2_A 173 DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LK--W----VKFSGLAWLGNDALLYSR-FAEPKEGQAFQALNYNQT 244 (741)
T ss_dssp TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EE--E----EESCCCEESTTSEEEEEE-CCCC--------CCCCCE
T ss_pred CCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CC--C----ceeccEEEECCCEEEEEE-ecCcccccccccCCCCCE
Confidence 3444444333 3333467889999988875431 11 0 001122232243444443 2111 0112456
Q ss_pred EEEEECCCCcee--ecCCCcc-cccceEEEEE-CCE-EEEEcCCCCCCCCCCeeEEEcCCCC--c-EEEcCCCCCCCcce
Q 040145 176 VLKYEMQKNRWT--VMNKMIT-ARSFFASGVI-GGM-IYVAGGSSADLFELDSAEVLDPVKG--N-WRTIASMGTNMASY 247 (402)
Q Consensus 176 ~~~~d~~t~~W~--~~~~~~~-~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~yd~~t~--~-W~~~~~~~~~~~~~ 247 (402)
+++++..|+.-. .+-..+. +......... +++ |++.... .... .+.++++|..+. . |+.+..........
T Consensus 245 v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~-~~~~-~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~ 322 (741)
T 1yr2_A 245 VWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSE-GTDP-VNTVHVARVTNGKIGPVTALIPDLKAQWDF 322 (741)
T ss_dssp EEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEEC-TTCS-CCEEEEEEEETTEECCCEEEECSSSSCEEE
T ss_pred EEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEc-cCCC-cceEEEEECCCCCCcccEEecCCCCceEEE
Confidence 888888776521 1211111 1222233332 454 4444332 2112 568999999877 6 87775333222221
Q ss_pred eEEEECCEEEEEcccccCCccCCcEEEEeCCC--CCeeeccccccCCCceeEEEECCEEEEEeccC-CcEEEEEeCCCCc
Q 040145 248 DAAVLDGKLLVTEGWLWPFFVSPRGQVYDPST--DNWESMAVGLREGWTGSSVVVYEHLFVVSELE-RMKLKVYDPSTDS 324 (402)
Q Consensus 248 ~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~--~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~-~~~~~~yd~~~~~ 324 (402)
...-++.||+...... ....++.+|+.+ ..|..+-+.... ........++++++....+ ...++++|.....
T Consensus 323 -~~~dg~~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~l~~~~~~-~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~ 397 (741)
T 1yr2_A 323 -VDGVGDQLWFVSGDGA---PLKKIVRVDLSGSTPRFDTVVPESKD-NLESVGIAGNRLFASYIHDAKSQVLAFDLDGKP 397 (741)
T ss_dssp -EEEETTEEEEEECTTC---TTCEEEEEECSSSSCEEEEEECCCSS-EEEEEEEEBTEEEEEEEETTEEEEEEEETTSCE
T ss_pred -EeccCCEEEEEECCCC---CCCEEEEEeCCCCccccEEEecCCCC-eEEEEEEECCEEEEEEEECCEEEEEEEeCCCCc
Confidence 2234667777654321 123689999987 468877542222 1112233478887776544 4578899976554
Q ss_pred eeecCCCCCCccccCCeEEEE-eCC-EEEEEecCceeeeEEEEecccccc
Q 040145 325 WETIEGPPLPEQICKPFAVNA-CDC-RVYVVGRNLHVAVGHITRLSTSEK 372 (402)
Q Consensus 325 W~~~~~~~~p~~~~~~~~~~~-~~~-~i~v~GG~~~~~~~~v~~~~~~~~ 372 (402)
-..+. +|.. .....+.. .++ .|++... .-....+++.+|....
T Consensus 398 ~~~l~---~~~~-~~v~~~~~s~d~~~l~~~~s-s~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 398 AGAVS---LPGI-GSASGLSGRPGDRHAYLSFS-SFTQPATVLALDPATA 442 (741)
T ss_dssp EEECB---CSSS-CEEEEEECCBTCSCEEEEEE-ETTEEEEEEEEETTTT
T ss_pred eeecc---CCCC-eEEEEeecCCCCCEEEEEEc-CCCCCCEEEEEECCCC
Confidence 44443 3321 11111211 233 3444332 2233467888876443
No 155
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=96.17 E-value=0.29 Score=42.90 Aligned_cols=173 Identities=13% Similarity=0.081 Sum_probs=85.4
Q ss_pred eEEEeecCCCcEE-eCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCc-cccc
Q 040145 120 QWQVLDLTHYCWH-TIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMI-TARS 197 (402)
Q Consensus 120 ~~~~~d~~~~~W~-~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~-~~r~ 197 (402)
.+.+||..+.+-. .+..-. ....++.+..++.+++.|+.+ ..+.+||..++.- ....+. ....
T Consensus 78 ~i~vwd~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~l~sgs~D-------~~v~lWd~~~~~~-~~~~~~~h~~~ 142 (304)
T 2ynn_A 78 RIRVFNYNTGEKVVDFEAHP-------DYIRSIAVHPTKPYVLSGSDD-------LTVKLWNWENNWA-LEQTFEGHEHF 142 (304)
T ss_dssp EEEEEETTTCCEEEEEECCS-------SCEEEEEECSSSSEEEEEETT-------SCEEEEEGGGTTE-EEEEECCCCSC
T ss_pred EEEEEECCCCcEEEEEeCCC-------CcEEEEEEcCCCCEEEEECCC-------CeEEEEECCCCcc-hhhhhcccCCc
Confidence 3778888776532 221111 223444454566777777763 2688899876521 111111 1111
Q ss_pred ceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCCCCcceeEEEE----CCEEEEEcccccCCccC
Q 040145 198 FFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGTNMASYDAAVL----DGKLLVTEGWLWPFFVS 269 (402)
Q Consensus 198 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~----~g~ly~~gG~~~~~~~~ 269 (402)
-.+++.. ++.+++.|+. -..+.+||..+.. ...... .......+.+ ++.+++.|+.+
T Consensus 143 v~~v~~~p~~~~~l~sgs~------D~~v~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~s~s~D------ 207 (304)
T 2ynn_A 143 VMCVAFNPKDPSTFASGCL------DRTVKVWSLGQSTPNFTLTTG---QERGVNYVDYYPLPDKPYMITASDD------ 207 (304)
T ss_dssp EEEEEECTTCTTEEEEEET------TSEEEEEETTCSSCSEEEECC---CTTCEEEEEECCSTTCCEEEEEETT------
T ss_pred EEEEEECCCCCCEEEEEeC------CCeEEEEECCCCCccceeccC---CcCcEEEEEEEEcCCCCEEEEEcCC------
Confidence 1233332 3466777776 3568888876543 111110 0011112222 45566666643
Q ss_pred CcEEEEeCCCCCeeeccccccCCCce-eEEEE--CCEEEEEeccCCcEEEEEeCCCCcee
Q 040145 270 PRGQVYDPSTDNWESMAVGLREGWTG-SSVVV--YEHLFVVSELERMKLKVYDPSTDSWE 326 (402)
Q Consensus 270 ~~~~~yd~~~~~W~~~~~~~~~~~~~-~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~ 326 (402)
..+..||..+++-. .. +...... ..+.+ ++.+++.|+. ...+.+||..+.+-.
T Consensus 208 ~~i~iWd~~~~~~~--~~-~~~h~~~v~~~~~~p~~~~l~s~s~-Dg~i~iWd~~~~~~~ 263 (304)
T 2ynn_A 208 LTIKIWDYQTKSCV--AT-LEGHMSNVSFAVFHPTLPIIISGSE-DGTLKIWNSSTYKVE 263 (304)
T ss_dssp SEEEEEETTTTEEE--EE-EECCSSCEEEEEECSSSSEEEEEET-TSCEEEEETTTCCEE
T ss_pred CeEEEEeCCCCccc--ee-eCCCCCCEEEEEECCCCCEEEEEcC-CCeEEEEECCCCcee
Confidence 36889998775421 11 1111111 11222 5566666665 457899999876533
No 156
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.14 E-value=0.21 Score=53.25 Aligned_cols=205 Identities=12% Similarity=0.023 Sum_probs=100.3
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF 199 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~ 199 (402)
.+.+||..+.+...+.... .....+.+..++.+ +.++. ...+.+||..+++-...-.........
T Consensus 1026 ~i~vwd~~~~~~~~~~~~~-------~~v~~~~~~~~~~l-~~~~~-------dg~v~vwd~~~~~~~~~~~~~~~~v~~ 1090 (1249)
T 3sfz_A 1026 VIQVWNWQTGDYVFLQAHQ-------ETVKDFRLLQDSRL-LSWSF-------DGTVKVWNVITGRIERDFTCHQGTVLS 1090 (1249)
T ss_dssp BEEEEETTTTEEECCBCCS-------SCEEEEEECSSSEE-EEEES-------SSEEEEEETTTTCCCEEEECCSSCCCC
T ss_pred EEEEEECCCCceEEEecCC-------CcEEEEEEcCCCcE-EEEEC-------CCcEEEEECCCCceeEEEcccCCcEEE
Confidence 3778888887765433221 22334444345554 44444 237999999887532211111111111
Q ss_pred EEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeC
Q 040145 200 ASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDP 277 (402)
Q Consensus 200 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~ 277 (402)
....-+++.++.|+.+ ..+.+||..+.. .+..+........++.+ +|++++.|+.+ ..+.+||.
T Consensus 1091 ~~~s~d~~~l~s~s~d------~~v~iwd~~~~~--~~~~l~~h~~~v~~~~~s~dg~~lat~~~d------g~i~vwd~ 1156 (1249)
T 3sfz_A 1091 CAISSDATKFSSTSAD------KTAKIWSFDLLS--PLHELKGHNGCVRCSAFSLDGILLATGDDN------GEIRIWNV 1156 (1249)
T ss_dssp EEECSSSSSCEEECCS------SCCCEECSSSSS--CSBCCCCCSSCEEEEEECSSSSEEEEEETT------SCCCEEES
T ss_pred EEECCCCCEEEEEcCC------CcEEEEECCCcc--eeeeeccCCCcEEEEEECCCCCEEEEEeCC------CEEEEEEC
Confidence 1222355666677653 446788887654 22222222222223333 77787877754 25788998
Q ss_pred CCCCeeecc-c-c-----ccCCCceeEEE--ECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCC
Q 040145 278 STDNWESMA-V-G-----LREGWTGSSVV--VYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDC 348 (402)
Q Consensus 278 ~~~~W~~~~-~-~-----~~~~~~~~~~~--~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~ 348 (402)
.+++-...- + . ......-..+. -++++++.++ ..+.+||..+.+-. ...... ...........++
T Consensus 1157 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~---g~v~vwd~~~g~~~--~~~~~~-~~~i~~~~~s~dg 1230 (1249)
T 3sfz_A 1157 SDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG---GYLKWWNVATGDSS--QTFYTN-GTNLKKIHVSPDF 1230 (1249)
T ss_dssp SSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES---SSEEEBCSSSCBCC--CCCCCS-SCCCCCCEECSSS
T ss_pred CCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC---CeEEEEECCCCcee--eeeecc-CCcccEEEECCCC
Confidence 876533221 1 0 00111111222 2566666655 37899998776432 211111 1111223344577
Q ss_pred EEEEEecCcee
Q 040145 349 RVYVVGRNLHV 359 (402)
Q Consensus 349 ~i~v~GG~~~~ 359 (402)
+.++.|+.+..
T Consensus 1231 ~~l~~~~~dg~ 1241 (1249)
T 3sfz_A 1231 RTYVTVDNLGI 1241 (1249)
T ss_dssp CCEEEECTTCC
T ss_pred CEEEEecCCcE
Confidence 77777775543
No 157
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.14 E-value=1.2 Score=44.16 Aligned_cols=114 Identities=18% Similarity=0.290 Sum_probs=70.6
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCc--eeecCCCccc--------ccceEEEEECCEEEEEcCCCCCCCCCCeeE
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVMNKMITA--------RSFFASGVIGGMIYVAGGSSADLFELDSAE 225 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 225 (402)
++.||+.... ..++.+|..|++ |+.-...+.. ....+.++.+++||+... ...+.
T Consensus 77 ~g~vyv~~~~--------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~-------dg~l~ 141 (677)
T 1kb0_A 77 DGIMYVSASW--------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------DGRLI 141 (677)
T ss_dssp TTEEEEECGG--------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------TSEEE
T ss_pred CCEEEEECCC--------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC-------CCEEE
Confidence 8999998642 379999999985 8775433211 112345667889888753 35689
Q ss_pred EEcCCCCc--EEEcCC--CCC-CCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCC--eeec
Q 040145 226 VLDPVKGN--WRTIAS--MGT-NMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WESM 285 (402)
Q Consensus 226 ~yd~~t~~--W~~~~~--~~~-~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~~ 285 (402)
.+|..|++ |+.-.. ... .......++.++.+|+..+..+ ......++.||..+++ |+.-
T Consensus 142 alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~-~~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 142 ALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAE-YGVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp EEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEE
T ss_pred EEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccc-cCCCCEEEEEECCCCcEEEEec
Confidence 99998875 876422 111 1112233456888887543211 1112478999998875 8653
No 158
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=96.13 E-value=0.33 Score=43.15 Aligned_cols=177 Identities=11% Similarity=0.043 Sum_probs=88.8
Q ss_pred CEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEEC----CEEEEEcCCCCCCCCCCeeEEEcCCCC
Q 040145 157 GTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIG----GMIYVAGGSSADLFELDSAEVLDPVKG 232 (402)
Q Consensus 157 ~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~----~~iyv~GG~~~~~~~~~~~~~yd~~t~ 232 (402)
..+++.|+... ....+.+||..+++............-.++.... +.+++.|+. ...+.+||..+.
T Consensus 31 ~~l~~~~s~~~----~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~ 100 (357)
T 3i2n_A 31 AKFVTMGNFAR----GTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDF------GGNLHIWNLEAP 100 (357)
T ss_dssp SEEEEEEC--C----CCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEET------TSCEEEECTTSC
T ss_pred ceEEEecCccC----CCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecC------CCeEEEEeCCCC
Confidence 36666665410 1337899999888765433222222222333322 466777765 346888998876
Q ss_pred c--EEEcCCCCCCCcceeEE--------EECCEEEEEcccccCCccCCcEEEEeCCCCC--eeeccccccC-CCceeEEE
Q 040145 233 N--WRTIASMGTNMASYDAA--------VLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WESMAVGLRE-GWTGSSVV 299 (402)
Q Consensus 233 ~--W~~~~~~~~~~~~~~~~--------~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~-~~~~~~~~ 299 (402)
. -..+.... ...... .-++.+++.|+.+ ..+.+||+.+.. ...+...... ......+.
T Consensus 101 ~~~~~~~~~~~---~~v~~~~~~~~~~~s~~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (357)
T 3i2n_A 101 EMPVYSVKGHK---EIINAIDGIGGLGIGEGAPEIVTGSRD------GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVA 171 (357)
T ss_dssp SSCSEEECCCS---SCEEEEEEESGGGCC-CCCEEEEEETT------SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEE
T ss_pred CccEEEEEecc---cceEEEeeccccccCCCccEEEEEeCC------CeEEEEeCCCCCCcceeccccCCCCCCceEEEE
Confidence 4 22222111 111111 1256666666643 368899998764 3333221111 11111122
Q ss_pred ------ECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEe----CCEEEEEecCce
Q 040145 300 ------VYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNAC----DCRVYVVGRNLH 358 (402)
Q Consensus 300 ------~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~----~~~i~v~GG~~~ 358 (402)
-++.+++.|+. ...+.+||..+..-.... ... ....++... ++..++.|+.++
T Consensus 172 ~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~--~~~---~~v~~~~~~~~~~~~~~l~~~~~dg 234 (357)
T 3i2n_A 172 FGNAYNQEERVVCAGYD-NGDIKLFDLRNMALRWET--NIK---NGVCSLEFDRKDISMNKLVATSLEG 234 (357)
T ss_dssp EECCCC-CCCEEEEEET-TSEEEEEETTTTEEEEEE--ECS---SCEEEEEESCSSSSCCEEEEEESTT
T ss_pred EEeccCCCCCEEEEEcc-CCeEEEEECccCceeeec--CCC---CceEEEEcCCCCCCCCEEEEECCCC
Confidence 36777777665 568999999887543222 111 122233333 566777776543
No 159
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=96.13 E-value=0.62 Score=40.75 Aligned_cols=207 Identities=8% Similarity=-0.035 Sum_probs=98.4
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcc-cccc
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMIT-ARSF 198 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~-~r~~ 198 (402)
.+.++|..+..-...-... . ....++.+..++.+++.|+.+ ..+.+||..+++-.. .+.. ...-
T Consensus 36 ~v~lWd~~~~~~~~~~~~~--~----~~v~~~~~~~~~~~l~s~s~d-------~~i~vwd~~~~~~~~--~~~~h~~~v 100 (304)
T 2ynn_A 36 RVELWNYETQVEVRSIQVT--E----TPVRAGKFIARKNWIIVGSDD-------FRIRVFNYNTGEKVV--DFEAHPDYI 100 (304)
T ss_dssp EEEEEETTTTEEEEEEECC--S----SCEEEEEEEGGGTEEEEEETT-------SEEEEEETTTCCEEE--EEECCSSCE
T ss_pred cEEEEECCCCceeEEeecc--C----CcEEEEEEeCCCCEEEEECCC-------CEEEEEECCCCcEEE--EEeCCCCcE
Confidence 3777888776532211111 0 112333443466677777652 278999998875321 1111 1111
Q ss_pred eEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE---CCEEEEEcccccCCccCCcEEE
Q 040145 199 FASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL---DGKLLVTEGWLWPFFVSPRGQV 274 (402)
Q Consensus 199 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~ 274 (402)
.+++.. ++.+++.|+. -..+.+||..++. .....+........++.+ ++.+++.|+.+ ..+..
T Consensus 101 ~~~~~~~~~~~l~sgs~------D~~v~lWd~~~~~-~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D------~~v~i 167 (304)
T 2ynn_A 101 RSIAVHPTKPYVLSGSD------DLTVKLWNWENNW-ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD------RTVKV 167 (304)
T ss_dssp EEEEECSSSSEEEEEET------TSCEEEEEGGGTT-EEEEEECCCCSCEEEEEECTTCTTEEEEEETT------SEEEE
T ss_pred EEEEEcCCCCEEEEECC------CCeEEEEECCCCc-chhhhhcccCCcEEEEEECCCCCCEEEEEeCC------CeEEE
Confidence 223332 4556666765 3457888876642 111111111122223333 45677777754 36888
Q ss_pred EeCCCCCeeeccccccCCCceeEEEE----CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEE
Q 040145 275 YDPSTDNWESMAVGLREGWTGSSVVV----YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRV 350 (402)
Q Consensus 275 yd~~~~~W~~~~~~~~~~~~~~~~~~----~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i 350 (402)
||+.+..=...-. .........+.+ ++.+++.|+. ...+.+||..+.+-...- .-. ...........++.+
T Consensus 168 wd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~s~-D~~i~iWd~~~~~~~~~~--~~h-~~~v~~~~~~p~~~~ 242 (304)
T 2ynn_A 168 WSLGQSTPNFTLT-TGQERGVNYVDYYPLPDKPYMITASD-DLTIKIWDYQTKSCVATL--EGH-MSNVSFAVFHPTLPI 242 (304)
T ss_dssp EETTCSSCSEEEE-CCCTTCEEEEEECCSTTCCEEEEEET-TSEEEEEETTTTEEEEEE--ECC-SSCEEEEEECSSSSE
T ss_pred EECCCCCccceec-cCCcCcEEEEEEEEcCCCCEEEEEcC-CCeEEEEeCCCCccceee--CCC-CCCEEEEEECCCCCE
Confidence 9986543111100 011111111222 4556666655 568999999876422211 110 001111222346677
Q ss_pred EEEecCcee
Q 040145 351 YVVGRNLHV 359 (402)
Q Consensus 351 ~v~GG~~~~ 359 (402)
++.|+.+..
T Consensus 243 l~s~s~Dg~ 251 (304)
T 2ynn_A 243 IISGSEDGT 251 (304)
T ss_dssp EEEEETTSC
T ss_pred EEEEcCCCe
Confidence 777876544
No 160
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=96.12 E-value=0.9 Score=42.48 Aligned_cols=197 Identities=14% Similarity=0.162 Sum_probs=108.2
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCceeec--CCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVM--NKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN 233 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~--~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 233 (402)
++.+|++-|. ..|.||..+++.... +.++ . .-++....+++|++-|. ..+.||+.+++
T Consensus 158 ~~~~yfFkG~---------~yw~yd~~~~~~~~~~w~gi~--~-iDAA~~~~g~~YfFkG~--------~y~rfd~~~~~ 217 (460)
T 1qhu_A 158 DEGILFFQGN---------RKWFWDLTTGTKKERSWPAVG--N-CTSALRWLGRYYCFQGN--------QFLRFNPVSGE 217 (460)
T ss_dssp SSEEEEEETT---------EEEEEETTTTEEEEECCTTSC--C-CSEEEEETTEEEEEETT--------EEEEECTTTCC
T ss_pred CCeEEEEecc---------cEEEEecccceeecccCCCCC--c-cchheeeCCceEEEECC--------EEEEEcCccCc
Confidence 6788888775 689999988764431 2232 2 23444457899999873 46777776543
Q ss_pred ------------EEEcCCCC------------------CCCcceeEEE--ECCEEEEEcccccCCccCCcEEEEeCCCCC
Q 040145 234 ------------WRTIASMG------------------TNMASYDAAV--LDGKLLVTEGWLWPFFVSPRGQVYDPSTDN 281 (402)
Q Consensus 234 ------------W~~~~~~~------------------~~~~~~~~~~--~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~ 281 (402)
|-.++... .+.....++. .+|++|++-|. ..+++|...+.
T Consensus 218 v~~gyPk~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg~--------~yWR~~~~~~~ 289 (460)
T 1qhu_A 218 VPPGYPLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSGS--------HYWRLDTNRDG 289 (460)
T ss_dssp CCTTCCEEHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEETT--------EEEECTTGGGC
T ss_pred ccCCCCcchhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeCC--------EEEEEecCCCC
Confidence 21111100 0011223333 37899999773 46677665443
Q ss_pred eee--ccc---cccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCceeecCC--------CCCCcc--c-cCCeEEEE
Q 040145 282 WES--MAV---GLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEG--------PPLPEQ--I-CKPFAVNA 345 (402)
Q Consensus 282 W~~--~~~---~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~--------~~~p~~--~-~~~~~~~~ 345 (402)
+.. +.. .+|.. ..++...++++|+|-|. .+|+|+..+. .+.+.+ +.+|.. . +..+++..
T Consensus 290 ~~p~~Is~~WpglP~~-IDAAf~~~~~~yfFkG~---~yw~f~~~~g-~~~~~GyPK~I~~~lGlp~~~~~~~IDAA~~~ 364 (460)
T 1qhu_A 290 WHSWPIAHQWPQGPST-VDAAFSWEDKLYLIQDT---KVYVFLTKGG-YTLVNGYPKRLEKELGSPPVISLEAVDAAFVC 364 (460)
T ss_dssp CCCEEGGGTCTTSCSS-CSEEEEETTEEEEEETT---EEEEEECSBS-CEECTTCCEEHHHHHCCCSSCCCSCCCEEECC
T ss_pred cCccchhhhccCCCCC-CcEEEEECCeEEEEeCC---EEEEEeCCCC-ceecCCCCeEHHHhccCCCccccCcccEEEEe
Confidence 321 111 12222 22334568999999665 7999987531 222321 223332 1 12223322
Q ss_pred -eCCEEEEEecCceeeeEEEEecccccccCceeeeEEEEeC-CCCCCCccc
Q 040145 346 -CDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVVDA-PDNFSDLTP 394 (402)
Q Consensus 346 -~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W~~~~~-~~~~~~~~~ 394 (402)
.++++|++-| +..|.||... ..+..|...+. |....++..
T Consensus 365 ~~~~ktyfFkG------~~ywryd~~~---~Pr~i~~~~~gi~~~vdAaf~ 406 (460)
T 1qhu_A 365 PGSSRLHIMAG------RRLWWLDLKS---GAQATWTELPWPHEKVDGALC 406 (460)
T ss_dssp TTCCEEEEEET------TEEEEEEGGG---GGGCCCEEECCSCSCCSEEEE
T ss_pred CCCCEEEEEEC------CEEEEEECCC---CccchhhhCCCCCCCcCEEEe
Confidence 4689999988 3477887643 25556666555 555554433
No 161
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.11 E-value=0.81 Score=41.87 Aligned_cols=212 Identities=11% Similarity=0.078 Sum_probs=116.4
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF 199 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~ 199 (402)
.+..+++.......+.... ....+.+.-..++.||+.--. ...++++++.....+.+...... ...
T Consensus 97 ~I~~i~~~~~~~~~~~~~~------~~~~gl~~d~~~~~ly~~D~~-------~~~I~r~~~~g~~~~~~~~~~~~-~p~ 162 (386)
T 3v65_B 97 DIRQVLPHRSEYTLLLNNL------ENAIALDFHHRRELVFWSDVT-------LDRILRANLNGSNVEEVVSTGLE-SPG 162 (386)
T ss_dssp CEEEECTTSCCCEEEECSC------SCEEEEEEETTTTEEEEEETT-------TTEEEEEETTSCCEEEEECSSCS-CCC
T ss_pred cceeeccCCCcEEEEecCC------CccEEEEEecCCCeEEEEeCC-------CCcEEEEecCCCCcEEEEeCCCC-Ccc
Confidence 3677777776655443211 022333333346889987532 34799999987765543221111 112
Q ss_pred EEEE--ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCccee-EEEE--CCEEEEEcccccCCccCCcEEE
Q 040145 200 ASGV--IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYD-AAVL--DGKLLVTEGWLWPFFVSPRGQV 274 (402)
Q Consensus 200 ~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~-~~~~--~g~ly~~gG~~~~~~~~~~~~~ 274 (402)
++++ .++.||+.-.. ...++++++....-+.+.. ....... .++- ++.||+.-... ...+++
T Consensus 163 glavd~~~g~lY~~d~~------~~~I~~~~~dg~~~~~l~~--~~l~~P~giavdp~~g~ly~td~~~-----~~~I~r 229 (386)
T 3v65_B 163 GLAVDWVHDKLYWTDSG------TSRIEVANLDGAHRKVLLW--QSLEKPRAIALHPMEGTIYWTDWGN-----TPRIEA 229 (386)
T ss_dssp CEEEETTTTEEEEEETT------TTEEEECBTTSCSCEEEEC--SSCSCEEEEEEETTTTEEEEEECSS-----SCEEEE
T ss_pred EEEEEeCCCeEEEEcCC------CCeEEEEeCCCCceEEeec--CCCCCCcEEEEEcCCCeEEEeccCC-----CCEEEE
Confidence 3333 47899998653 4578888887554333311 1111222 3333 68899874321 247999
Q ss_pred EeCCCCCeeeccccccCCCceeEEE--ECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEE
Q 040145 275 YDPSTDNWESMAVGLREGWTGSSVV--VYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYV 352 (402)
Q Consensus 275 yd~~~~~W~~~~~~~~~~~~~~~~~--~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v 352 (402)
+++....-..+.. ....+....+. .+++||+.-.. ...|+++|++...-..+....+ ....++++.++.||+
T Consensus 230 ~~~dG~~~~~~~~-~~~~~PnGlavd~~~~~lY~aD~~-~~~I~~~d~dG~~~~~~~~~~~----~~P~giav~~~~ly~ 303 (386)
T 3v65_B 230 SSMDGSGRRIIAD-THLFWPNGLTIDYAGRRMYWVDAK-HHVIERANLDGSHRKAVISQGL----PHPFAITVFEDSLYW 303 (386)
T ss_dssp EETTSCSCEEEEC-SSCSCEEEEEEEGGGTEEEEEETT-TTEEEEECTTSCSCEEEECSSC----SSEEEEEEETTEEEE
T ss_pred EeCCCCCcEEEEE-CCCCCeeeEEEeCCCCEEEEEECC-CCEEEEEeCCCCeeEEEEECCC----CCceEEEEECCEEEE
Confidence 9987544333321 11111112222 37899998553 6789999987543333321122 345677788999999
Q ss_pred EecCceeeeEEEEecc
Q 040145 353 VGRNLHVAVGHITRLS 368 (402)
Q Consensus 353 ~GG~~~~~~~~v~~~~ 368 (402)
.--..+. |..++
T Consensus 304 td~~~~~----V~~~~ 315 (386)
T 3v65_B 304 TDWHTKS----INSAN 315 (386)
T ss_dssp EETTTTE----EEEEE
T ss_pred eeCCCCe----EEEEE
Confidence 8754333 55555
No 162
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.79 Score=41.72 Aligned_cols=189 Identities=12% Similarity=0.049 Sum_probs=93.2
Q ss_pred CEEEEEeCccCCCCCCCceEEEEECCCCc------eee-cCCCc-ccccceEEEEE-C-CEEEEEcCCCCCCCCCCeeEE
Q 040145 157 GTLFVCGGMVSDVDCPLDLVLKYEMQKNR------WTV-MNKMI-TARSFFASGVI-G-GMIYVAGGSSADLFELDSAEV 226 (402)
Q Consensus 157 ~~i~v~GG~~~~~~~~~~~~~~~d~~t~~------W~~-~~~~~-~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~ 226 (402)
+.+++.|+.+ ..+.+||..++. -.. +.... ....-.+++.. + +.+++.|+. ...+.+
T Consensus 126 ~~~l~s~~~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~v~i 192 (416)
T 2pm9_A 126 DNVLASGGNN-------GEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS------SNFASI 192 (416)
T ss_dssp TTBEEEECSS-------SCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESS------SSCEEE
T ss_pred CCEEEEEcCC-------CeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcC------CCCEEE
Confidence 6777777752 268899998765 111 11111 11122233333 2 467777765 356899
Q ss_pred EcCCCCcEEEcCCCCCC----CcceeEEEE--CC-EEEEEcccccCCccCCcEEEEeCCCCCeeeccccc-cCCCceeEE
Q 040145 227 LDPVKGNWRTIASMGTN----MASYDAAVL--DG-KLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGL-REGWTGSSV 298 (402)
Q Consensus 227 yd~~t~~W~~~~~~~~~----~~~~~~~~~--~g-~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~~~~~~~~ 298 (402)
||..+..-...-..... ......+.+ ++ .+++.|+.++. ...+.+||+.+..- .+.... .....-..+
T Consensus 193 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~---~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~ 268 (416)
T 2pm9_A 193 WDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN---DPSILIWDLRNANT-PLQTLNQGHQKGILSL 268 (416)
T ss_dssp EETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS---SCCCCEEETTSTTS-CSBCCCSCCSSCEEEE
T ss_pred EECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC---CceEEEEeCCCCCC-CcEEeecCccCceeEE
Confidence 99988764433222211 122223333 33 46666664321 11678899887531 111101 111111123
Q ss_pred EE---CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCC-EEEEEecCceeeeEEEEecc
Q 040145 299 VV---YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDC-RVYVVGRNLHVAVGHITRLS 368 (402)
Q Consensus 299 ~~---~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~v~~~~ 368 (402)
.+ ++.+++.|+. ...+.+||..+.+-...- ..... .........++ .+++.|+.++. ..+|.+.
T Consensus 269 ~~s~~~~~~l~s~~~-dg~v~~wd~~~~~~~~~~--~~~~~-~v~~~~~s~~~~~~l~s~~~d~~--i~iw~~~ 336 (416)
T 2pm9_A 269 DWCHQDEHLLLSSGR-DNTVLLWNPESAEQLSQF--PARGN-WCFKTKFAPEAPDLFACASFDNK--IEVQTLQ 336 (416)
T ss_dssp EECSSCSSCEEEEES-SSEEEEECSSSCCEEEEE--ECSSS-CCCCEEECTTCTTEEEECCSSSE--EEEEESC
T ss_pred EeCCCCCCeEEEEeC-CCCEEEeeCCCCccceee--cCCCC-ceEEEEECCCCCCEEEEEecCCc--EEEEEcc
Confidence 33 5677777765 557999998876432211 11110 11122223455 68888886544 3344443
No 163
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=96.05 E-value=0.9 Score=41.92 Aligned_cols=225 Identities=9% Similarity=0.038 Sum_probs=118.8
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK 183 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t 183 (402)
++.||+... ....+.++|+.++.-..+..... ..+ .+....++.||+..... ...++++|+.+
T Consensus 141 ~g~lyv~d~----~~~~I~~id~~~g~~~~~~~~~~------~~~-ia~~~~g~~l~~~d~~~------~~~I~~~d~~~ 203 (409)
T 3hrp_A 141 NNTVLAYQR----DDPRVRLISVDDNKVTTVHPGFK------GGK-PAVTKDKQRVYSIGWEG------THTVYVYMKAS 203 (409)
T ss_dssp TTEEEEEET----TTTEEEEEETTTTEEEEEEETCC------BCB-CEECTTSSEEEEEBSST------TCEEEEEEGGG
T ss_pred CCCEEEEec----CCCcEEEEECCCCEEEEeeccCC------CCc-eeEecCCCcEEEEecCC------CceEEEEEcCC
Confidence 566888753 23458889998877655432221 112 22222344677665421 12799999976
Q ss_pred Cc-eeecCCCc--ccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCC---CCCCCcc-e-eEEEE-
Q 040145 184 NR-WTVMNKMI--TARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIAS---MGTNMAS-Y-DAAVL- 252 (402)
Q Consensus 184 ~~-W~~~~~~~--~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~---~~~~~~~-~-~~~~~- 252 (402)
+. ...+..+. .....+++++. ++.||+... ...+++||+.+.....+.. ....... . ..++.
T Consensus 204 ~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~-------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p 276 (409)
T 3hrp_A 204 GWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS-------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYF 276 (409)
T ss_dssp TTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT-------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEET
T ss_pred CceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC-------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeC
Confidence 54 23331111 11222334443 578999432 3479999998877554411 1111122 1 34443
Q ss_pred -CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccc-c----------CCCcee-EEEE--CCEEEEEeccCCcEEEE
Q 040145 253 -DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGL-R----------EGWTGS-SVVV--YEHLFVVSELERMKLKV 317 (402)
Q Consensus 253 -~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~----------~~~~~~-~~~~--~~~l~~~gg~~~~~~~~ 317 (402)
++.||+.... .+.+++||+... ...+.... . ...... .+++ +|.||+........|.+
T Consensus 277 ~~g~lyv~d~~------~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~ 349 (409)
T 3hrp_A 277 VDSNFYMSDQN------LSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRK 349 (409)
T ss_dssp TTTEEEEEETT------TTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEE
T ss_pred CCCEEEEEeCC------CCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEE
Confidence 5889997543 247899987654 22221100 0 001111 2333 67899885514678999
Q ss_pred EeCCCCceeecCCCC----------CCccccCCeEEEEe-CCEEEEEecCcee
Q 040145 318 YDPSTDSWETIEGPP----------LPEQICKPFAVNAC-DCRVYVVGRNLHV 359 (402)
Q Consensus 318 yd~~~~~W~~~~~~~----------~p~~~~~~~~~~~~-~~~i~v~GG~~~~ 359 (402)
+|+.+..-..+.+.+ .........++++. ++.|||....++.
T Consensus 350 ~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~ 402 (409)
T 3hrp_A 350 LDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKA 402 (409)
T ss_dssp EETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCE
T ss_pred EECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCe
Confidence 997666655554311 00112344566654 5889998765443
No 164
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.04 E-value=0.75 Score=40.94 Aligned_cols=215 Identities=12% Similarity=0.108 Sum_probs=108.1
Q ss_pred CCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCC-Ccccc-cceEEEEEC
Q 040145 128 HYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNK-MITAR-SFFASGVIG 205 (402)
Q Consensus 128 ~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~-~~~~r-~~~~~~~~~ 205 (402)
-.+|+.+.. +.. ..+..+.....+.+|+.|.. ..+++-+-.-.+|+.+.. ...+. ....+...+
T Consensus 24 g~~W~~~~~-~~~-----~~~~~v~~~~~~~~~~~G~~--------g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~ 89 (327)
T 2xbg_A 24 YNPWEAIQL-PTT-----ATILDMSFIDRHHGWLVGVN--------ATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQG 89 (327)
T ss_dssp SCCEEEEEC-SCS-----SCEEEEEESSSSCEEEEETT--------TEEEEESSTTSSCEECCCCCSCCCCEEEEEEEET
T ss_pred CCCceEeec-CCC-----CcEEEEEECCCCcEEEEcCC--------CeEEEeCCCCCCCeECCCCCCCCCccEEEEEecC
Confidence 456887752 211 23444444345678886532 134443323348998753 22222 233444456
Q ss_pred CEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCC-CCCcceeEEE-ECCEEEEEcccccCCccCCcEEEEeCCCCCee
Q 040145 206 GMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMG-TNMASYDAAV-LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWE 283 (402)
Q Consensus 206 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~-~~~~~~~~~~-~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~ 283 (402)
+.+|++|.. ..++.-+=.-.+|+.+.... .+......+. -++.+|+.+.. ..+++-+-.-.+|+
T Consensus 90 ~~~~~~g~~-------g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------g~v~~S~DgG~tW~ 155 (327)
T 2xbg_A 90 NEGWIVGEP-------PIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNV-------GAIYRTKDSGKNWQ 155 (327)
T ss_dssp TEEEEEEET-------TEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETT-------CCEEEESSTTSSEE
T ss_pred CeEEEEECC-------CeEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCC-------ccEEEEcCCCCCCE
Confidence 788887632 22333222245799886432 1112223332 36788887642 13555444566899
Q ss_pred eccccccCCCceeEEEECCEEEEEeccCCcEEEEE-eCCCCceeecCCCCCCccccCCeEEE-EeCCEEEEEecCceeee
Q 040145 284 SMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVY-DPSTDSWETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLHVAV 361 (402)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~y-d~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~~~ 361 (402)
.+..+.+.........-++.++++|.. . .+++- |....+|+.+.. +.+ .....++ ..++.+|+++...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~g~~-G-~~~~S~d~gG~tW~~~~~-~~~---~~~~~~~~~~~g~~~~~~~~G---- 225 (327)
T 2xbg_A 156 ALVQEAIGVMRNLNRSPSGEYVAVSSR-G-SFYSTWEPGQTAWEPHNR-TTS---RRLHNMGFTPDGRLWMIVNGG---- 225 (327)
T ss_dssp EEECSCCCCEEEEEECTTSCEEEEETT-S-SEEEEECTTCSSCEEEEC-CSS---SCEEEEEECTTSCEEEEETTT----
T ss_pred EeecCCCcceEEEEEcCCCcEEEEECC-C-cEEEEeCCCCCceeECCC-CCC---CccceeEECCCCCEEEEeCCc----
Confidence 987533332221112225677766533 2 34444 444678999852 222 2223333 3567888877532
Q ss_pred EEEEecccccccCceeeeEEEEeCC
Q 040145 362 GHITRLSTSEKKWSFSVQWQVVDAP 386 (402)
Q Consensus 362 ~~v~~~~~~~~~~~~~~~W~~~~~~ 386 (402)
.++.... +...+|+++..|
T Consensus 226 -~~~~s~~-----D~G~tW~~~~~~ 244 (327)
T 2xbg_A 226 -KIAFSDP-----DNSENWGELLSP 244 (327)
T ss_dssp -EEEEEET-----TEEEEECCCBCT
T ss_pred -eEEEecC-----CCCCeeEeccCC
Confidence 1333310 123478777655
No 165
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=95.99 E-value=0.47 Score=47.13 Aligned_cols=145 Identities=10% Similarity=0.030 Sum_probs=74.1
Q ss_pred CCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCC-CeeeccccccCCCc---
Q 040145 221 LDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTD-NWESMAVGLREGWT--- 294 (402)
Q Consensus 221 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~~~~--- 294 (402)
...++++|..++.-..+............+.. +|+..+++..+.. .....+..+|+.++ ....+.......+.
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~-~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~ 312 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRA-QNECKVNAYDAETGRFVRTLFVETDKHYVEPL 312 (706)
T ss_dssp EEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTT-SCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred eeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCC-CCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence 45789999998876655322111122222333 6664444333211 11237899999888 66655421111111
Q ss_pred -eeEEEE--CCEEEEEeccC-CcEEEEEeCCCCceeecCCCCCCccccCCeE-EE-EeCC-EEEEEecCceeeeEEEEec
Q 040145 295 -GSSVVV--YEHLFVVSELE-RMKLKVYDPSTDSWETIEGPPLPEQICKPFA-VN-ACDC-RVYVVGRNLHVAVGHITRL 367 (402)
Q Consensus 295 -~~~~~~--~~~l~~~gg~~-~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~-~~-~~~~-~i~v~GG~~~~~~~~v~~~ 367 (402)
.....- +|++++.+..+ ...++.+|........+.. -. ..... +. ..++ .||+.+.........++.+
T Consensus 313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~--~~---~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 387 (706)
T 2z3z_A 313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK--GE---WEVTNFAGFDPKGTRLYFESTEASPLERHFYCI 387 (706)
T ss_dssp SCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC--SS---SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred CCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC--CC---eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence 112233 77766655443 4578888877666666642 11 11112 12 2344 5666665544334567777
Q ss_pred cccc
Q 040145 368 STSE 371 (402)
Q Consensus 368 ~~~~ 371 (402)
|...
T Consensus 388 d~~~ 391 (706)
T 2z3z_A 388 DIKG 391 (706)
T ss_dssp ETTC
T ss_pred EcCC
Confidence 6533
No 166
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=95.97 E-value=1 Score=43.37 Aligned_cols=189 Identities=11% Similarity=0.014 Sum_probs=90.4
Q ss_pred ceEEEEcc--CCEEEEEeCccCCCCCCCceEEEEECCCC------ceeecCCCcccccc-eEEEEE-CCEEEEEcCCCCC
Q 040145 148 FRCVSIPR--EGTLFVCGGMVSDVDCPLDLVLKYEMQKN------RWTVMNKMITARSF-FASGVI-GGMIYVAGGSSAD 217 (402)
Q Consensus 148 ~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~d~~t~------~W~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~ 217 (402)
..++++.. ++.+++.|+.+ ..+.+||..++ ....+..+...... ..++.. +++.+++++.+..
T Consensus 67 v~~~~~sp~~~~~~l~s~~~d-------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 139 (615)
T 1pgu_A 67 VTTVKFSPIKGSQYLCSGDES-------GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD 139 (615)
T ss_dssp EEEEEECSSTTCCEEEEEETT-------SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSS
T ss_pred EEEEEECcCCCCCEEEEecCC-------CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCC
Confidence 34555555 67777777752 26888998655 33332222211111 222222 4555556554322
Q ss_pred CCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCE-EEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCC-
Q 040145 218 LFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGK-LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGW- 293 (402)
Q Consensus 218 ~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~-ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~- 293 (402)
. ...+.+||... .-.. +.........+.+ ++. +++.|+.+ ..+..||..+.+-...-.......
T Consensus 140 ~--~~~v~~~d~~~-~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~d------~~v~vwd~~~~~~~~~~~~~~~~~~ 207 (615)
T 1pgu_A 140 N--FGVFISWDSGN-SLGE---VSGHSQRINACHLKQSRPMRSMTVGDD------GSVVFYQGPPFKFSASDRTHHKQGS 207 (615)
T ss_dssp C--SEEEEETTTCC-EEEE---CCSCSSCEEEEEECSSSSCEEEEEETT------TEEEEEETTTBEEEEEECSSSCTTC
T ss_pred C--ccEEEEEECCC-ccee---eecCCccEEEEEECCCCCcEEEEEeCC------CcEEEEeCCCcceeeeecccCCCCc
Confidence 1 35678888332 1122 2222222222333 443 56666543 368889977654322111011100
Q ss_pred ceeEEEE--C-CEEEEEeccCCcEEEEEeCCCCceeecCCCCC---CccccCCeEEEEeCCEEEEEecCcee
Q 040145 294 TGSSVVV--Y-EHLFVVSELERMKLKVYDPSTDSWETIEGPPL---PEQICKPFAVNACDCRVYVVGRNLHV 359 (402)
Q Consensus 294 ~~~~~~~--~-~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~---p~~~~~~~~~~~~~~~i~v~GG~~~~ 359 (402)
.-.++.+ + +..++.|+. ...+.+||..+.+....- .. ... ....++...++..++.|+.++.
T Consensus 208 ~v~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~--~~~~~~~~-~~v~~~~~~~~~~l~~~~~d~~ 275 (615)
T 1pgu_A 208 FVRDVEFSPDSGEFVITVGS-DRKISCFDGKSGEFLKYI--EDDQEPVQ-GGIFALSWLDSQKFATVGADAT 275 (615)
T ss_dssp CEEEEEECSTTCCEEEEEET-TCCEEEEETTTCCEEEEC--CBTTBCCC-SCEEEEEESSSSEEEEEETTSE
T ss_pred eEEEEEECCCCCCEEEEEeC-CCeEEEEECCCCCEeEEe--cccccccC-CceEEEEEcCCCEEEEEcCCCc
Confidence 1112233 4 677777665 457999999876543321 01 111 1112333337777888776533
No 167
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=95.94 E-value=0.2 Score=46.51 Aligned_cols=189 Identities=11% Similarity=0.031 Sum_probs=93.3
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEc-cCCEEEEEeCccCCCCCCCceEEEEECC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIP-REGTLFVCGGMVSDVDCPLDLVLKYEMQ 182 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~d~~ 182 (402)
++.+++.|+.++ .+.+||..+..-..+-...... ..-.++.+. .++.+++.|+.+ ..+.+||..
T Consensus 131 ~~~~lasGs~dg----~i~lWd~~~~~~~~~~~~~gH~----~~V~~l~f~p~~~~~l~s~s~D-------~~v~iwd~~ 195 (435)
T 4e54_B 131 HPSTVAVGSKGG----DIMLWNFGIKDKPTFIKGIGAG----GSITGLKFNPLNTNQFYASSME-------GTTRLQDFK 195 (435)
T ss_dssp CTTCEEEEETTS----CEEEECSSCCSCCEEECCCSSS----CCCCEEEECSSCTTEEEEECSS-------SCEEEEETT
T ss_pred CCCEEEEEeCCC----EEEEEECCCCCceeEEEccCCC----CCEEEEEEeCCCCCEEEEEeCC-------CEEEEeecc
Confidence 445555554433 2778887766533222111000 112333332 356677777763 268899998
Q ss_pred CCceeecCCCccc-ccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CC-EEE
Q 040145 183 KNRWTVMNKMITA-RSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DG-KLL 257 (402)
Q Consensus 183 t~~W~~~~~~~~~-r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g-~ly 257 (402)
++..+.+...... ....++.. -++++++.|+. ...+.+||..... +..+........++.+ ++ .++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~------dg~i~~wd~~~~~---~~~~~~h~~~v~~v~~~p~~~~~~ 266 (435)
T 4e54_B 196 GNILRVFASSDTINIWFCSLDVSASSRMVVTGDN------VGNVILLNMDGKE---LWNLRMHKKKVTHVALNPCCDWFL 266 (435)
T ss_dssp SCEEEEEECCSSCSCCCCCEEEETTTTEEEEECS------SSBEEEEESSSCB---CCCSBCCSSCEEEEEECTTCSSEE
T ss_pred CCceeEEeccCCCCccEEEEEECCCCCEEEEEeC------CCcEeeeccCcce---eEEEecccceEEeeeecCCCceEE
Confidence 7765443322111 11122333 25677777775 4568888886543 2222222222233333 33 466
Q ss_pred EEcccccCCccCCcEEEEeCCCCCeeec-cccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCC
Q 040145 258 VTEGWLWPFFVSPRGQVYDPSTDNWESM-AVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTD 323 (402)
Q Consensus 258 ~~gG~~~~~~~~~~~~~yd~~~~~W~~~-~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~ 323 (402)
+.|+.+ ..+.+||+.+.+-... .........-.++.+ ++..++.|+. ...+.+||..+.
T Consensus 267 ~s~s~d------~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~-D~~i~iwd~~~~ 328 (435)
T 4e54_B 267 ATASVD------QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ-KSEIRVYSASQW 328 (435)
T ss_dssp EEEETT------SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES-SSCEEEEESSSS
T ss_pred EEecCc------ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC-CCEEEEEECCCC
Confidence 666643 2577888876542211 110111111111222 5666677665 457888998754
No 168
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=95.92 E-value=0.97 Score=41.18 Aligned_cols=214 Identities=14% Similarity=0.116 Sum_probs=101.4
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF 199 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~ 199 (402)
.+.+||..+.+-... +.... ....++.+..++..++.|+.+ ..+.+||..+++....-. ......
T Consensus 146 ~i~iwd~~~~~~~~~--~~~h~----~~v~~~~~~p~~~~l~s~s~d-------~~v~iwd~~~~~~~~~~~--~~~~v~ 210 (393)
T 1erj_A 146 LIRIWDIENRKIVMI--LQGHE----QDIYSLDYFPSGDKLVSGSGD-------RTVRIWDLRTGQCSLTLS--IEDGVT 210 (393)
T ss_dssp CEEEEETTTTEEEEE--ECCCS----SCEEEEEECTTSSEEEEEETT-------SEEEEEETTTTEEEEEEE--CSSCEE
T ss_pred eEEEEECCCCcEEEE--EccCC----CCEEEEEEcCCCCEEEEecCC-------CcEEEEECCCCeeEEEEE--cCCCcE
Confidence 377888887654322 11100 122334443456666666652 378899998876433211 111122
Q ss_pred EEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEE-cCCC----CCCCcceeEEEE--CCEEEEEcccccCCccCC
Q 040145 200 ASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRT-IASM----GTNMASYDAAVL--DGKLLVTEGWLWPFFVSP 270 (402)
Q Consensus 200 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~----~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~ 270 (402)
.++.. ++++++.|+. ...+.+||..++.-.. +... .........+.+ ++++++.|+.+ .
T Consensus 211 ~~~~~~~~~~~l~~~s~------d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d------~ 278 (393)
T 1erj_A 211 TVAVSPGDGKYIAAGSL------DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD------R 278 (393)
T ss_dssp EEEECSTTCCEEEEEET------TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT------S
T ss_pred EEEEECCCCCEEEEEcC------CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC------C
Confidence 23332 5677777776 3458899988775432 2111 111112222333 67777777653 3
Q ss_pred cEEEEeCCCCCeeeccc----------cccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCcccc
Q 040145 271 RGQVYDPSTDNWESMAV----------GLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQIC 338 (402)
Q Consensus 271 ~~~~yd~~~~~W~~~~~----------~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~ 338 (402)
.+..||+.+..-..... .......-..+.. ++..++.|+. ...+.+||..+..-... +.....
T Consensus 279 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~-D~~v~iwd~~~~~~~~~----l~~h~~ 353 (393)
T 1erj_A 279 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK-DRGVLFWDKKSGNPLLM----LQGHRN 353 (393)
T ss_dssp EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET-TSEEEEEETTTCCEEEE----EECCSS
T ss_pred EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC-CCeEEEEECCCCeEEEE----ECCCCC
Confidence 68888886532111000 0000000111222 4566666665 55789999887642221 111101
Q ss_pred CCeEEEEe-------CCEEEEEecCceeeeEEEEec
Q 040145 339 KPFAVNAC-------DCRVYVVGRNLHVAVGHITRL 367 (402)
Q Consensus 339 ~~~~~~~~-------~~~i~v~GG~~~~~~~~v~~~ 367 (402)
.-.+++.. ++.+++.||.+.. ..+|.+
T Consensus 354 ~v~~v~~~~~~~~~p~~~~l~sgs~Dg~--i~iW~~ 387 (393)
T 1erj_A 354 SVISVAVANGSSLGPEYNVFATGSGDCK--ARIWKY 387 (393)
T ss_dssp CEEEEEECSSCTTCTTCEEEEEEETTSE--EEEEEE
T ss_pred CEEEEEecCCcCcCCCCCEEEEECCCCc--EEECcc
Confidence 11233332 4678888886654 334544
No 169
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=95.90 E-value=0.94 Score=40.90 Aligned_cols=215 Identities=12% Similarity=0.009 Sum_probs=99.0
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEcc---CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccc
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPR---EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITAR 196 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r 196 (402)
.+.+||..+..-....... .......... ++.+++.|+.+ ..+.+||..++.-... +....
T Consensus 123 ~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-------~~v~~~d~~~~~~~~~--~~~~~ 186 (408)
T 4a11_B 123 TLKVWDTNTLQTADVFNFE-------ETVYSHHMSPVSTKHCLVAVGTRG-------PKVQLCDLKSGSCSHI--LQGHR 186 (408)
T ss_dssp EEEEEETTTTEEEEEEECS-------SCEEEEEECSSCSSCCEEEEEESS-------SSEEEEESSSSCCCEE--ECCCC
T ss_pred eEEEeeCCCCccceeccCC-------CceeeeEeecCCCCCcEEEEEcCC-------CeEEEEeCCCcceeee--ecCCC
Confidence 3778888877644332222 1112222211 33466666652 3689999987642221 11111
Q ss_pred cc-eEEEEE-CC-EEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCC------------CCCCCcceeEEEE--CCEEE
Q 040145 197 SF-FASGVI-GG-MIYVAGGSSADLFELDSAEVLDPVKGN--WRTIAS------------MGTNMASYDAAVL--DGKLL 257 (402)
Q Consensus 197 ~~-~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~------------~~~~~~~~~~~~~--~g~ly 257 (402)
.. .+++.. ++ .+++.|+. ...+.+||..+.. ...+.. ..........+.+ ++..+
T Consensus 187 ~~v~~~~~~~~~~~ll~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 260 (408)
T 4a11_B 187 QEILAVSWSPRYDYILATASA------DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL 260 (408)
T ss_dssp SCEEEEEECSSCTTEEEEEET------TSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEE
T ss_pred CcEEEEEECCCCCcEEEEEcC------CCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEE
Confidence 11 222332 23 36777765 3457888886643 222210 0111112222333 66666
Q ss_pred EEcccccCCccCCcEEEEeCCCCCeeeccc--c--ccCCCceeEE-EECCEEEEEeccCCcEEEEEeCCCCceeecCCCC
Q 040145 258 VTEGWLWPFFVSPRGQVYDPSTDNWESMAV--G--LREGWTGSSV-VVYEHLFVVSELERMKLKVYDPSTDSWETIEGPP 332 (402)
Q Consensus 258 ~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~--~--~~~~~~~~~~-~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~ 332 (402)
+.|+.+ ..+.+||+.+++-..... . .......... ...+..+++++. ...+.+||..+.+-...- .
T Consensus 261 ~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~--~ 331 (408)
T 4a11_B 261 LTVGTD------NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY-GSTIAVYTVYSGEQITML--K 331 (408)
T ss_dssp EEEETT------SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE-TTEEEEEETTTCCEEEEE--C
T ss_pred EEecCC------CeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEec-CCEEEEEECcCCcceeee--c
Confidence 766643 368999998765322211 0 0011111111 112233334443 458999998776433221 1
Q ss_pred CCccccCCeEEEEeCCEEEEEecCceeeeEEEEecc
Q 040145 333 LPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLS 368 (402)
Q Consensus 333 ~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~ 368 (402)
.. ...........++++++.|+.+.. ..+|.++
T Consensus 332 ~~-~~~v~~~~~s~~~~~l~s~~~dg~--i~iw~~~ 364 (408)
T 4a11_B 332 GH-YKTVDCCVFQSNFQELYSGSRDCN--ILAWVPS 364 (408)
T ss_dssp CC-SSCEEEEEEETTTTEEEEEETTSC--EEEEEEC
T ss_pred cC-CCeEEEEEEcCCCCEEEEECCCCe--EEEEeCC
Confidence 11 101112223456778888876544 3344443
No 170
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=95.89 E-value=0.88 Score=40.48 Aligned_cols=237 Identities=13% Similarity=0.045 Sum_probs=110.5
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEE-eC--CCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEE
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWH-TI--PAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYE 180 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~-~l--~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d 180 (402)
++.+++.|+.+.. +.+||..+.+-. .+ .....-. .... .++...++.|.+... ...+.+||
T Consensus 47 d~~~l~sg~~Dg~----v~iwd~~~~~~~~~~~~~~v~~~~--~~~~--~~s~s~D~~i~~w~~--------~~~~~~~~ 110 (343)
T 3lrv_A 47 DKWVCMCRCEDGA----LHFTQLKDSKTITTITTPNPRTGG--EHPA--IISRGPCNRLLLLYP--------GNQITILD 110 (343)
T ss_dssp EEEEEEEEEETTE----EEEEEESSSSCEEEEEEECCCTTC--CCCS--EEEECSTTEEEEEET--------TTEEEEEE
T ss_pred CCCEEEEECCCCc----EEEEECCCCcEEEEEecCCceeee--eCCc--eEEecCCCeEEEEEc--------cCceEEee
Confidence 4556666655443 677777665421 11 1111000 0011 233323555655532 22566777
Q ss_pred CCCCceeecCCCcccccceEEEEE---CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE-CCEE
Q 040145 181 MQKNRWTVMNKMITARSFFASGVI---GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL-DGKL 256 (402)
Q Consensus 181 ~~t~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~l 256 (402)
..+++-...........-..+... ++.+++.|+. -..+.+||..++.-...............+.. ++.+
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~------dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~ 184 (343)
T 3lrv_A 111 SKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADN------RGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLL 184 (343)
T ss_dssp TTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEET------TCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCE
T ss_pred cCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeC------CCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCE
Confidence 777652211111111111122221 4566777775 34688999988765433222211111222222 6788
Q ss_pred EEEcccccCCccCCcEEEEeCCCCCee--eccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCcee-ecCCC
Q 040145 257 LVTEGWLWPFFVSPRGQVYDPSTDNWE--SMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWE-TIEGP 331 (402)
Q Consensus 257 y~~gG~~~~~~~~~~~~~yd~~~~~W~--~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~-~~~~~ 331 (402)
++.|+.+ ..+.+||+.+++-. .+.. .....-..+.+ ++..++.|+. . .+.+||..+..-. .+...
T Consensus 185 lasg~~d------g~i~iwd~~~~~~~~~~~~~--~h~~~v~~l~fs~~g~~l~s~~~-~-~v~iwd~~~~~~~~~~~~~ 254 (343)
T 3lrv_A 185 LALYSPD------GILDVYNLSSPDQASSRFPV--DEEAKIKEVKFADNGYWMVVECD-Q-TVVCFDLRKDVGTLAYPTY 254 (343)
T ss_dssp EEEECTT------SCEEEEESSCTTSCCEECCC--CTTSCEEEEEECTTSSEEEEEES-S-BEEEEETTSSTTCBSSCCC
T ss_pred EEEEcCC------CEEEEEECCCCCCCccEEec--cCCCCEEEEEEeCCCCEEEEEeC-C-eEEEEEcCCCCcceeeccc
Confidence 8887754 37899999877532 2221 01111112333 6677777663 3 8999999765321 12110
Q ss_pred CCCccccCCeEEE-EeCCEEEEEecC-ceeeeEEEEecccccccC
Q 040145 332 PLPEQICKPFAVN-ACDCRVYVVGRN-LHVAVGHITRLSTSEKKW 374 (402)
Q Consensus 332 ~~p~~~~~~~~~~-~~~~~i~v~GG~-~~~~~~~v~~~~~~~~~~ 374 (402)
..........+++ ..+++.++.|+. ++. ..+|.++...+.|
T Consensus 255 ~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~--i~v~~~~~~~~~~ 297 (343)
T 3lrv_A 255 TIPEFKTGTVTYDIDDSGKNMIAYSNESNS--LTIYKFDKKTKNW 297 (343)
T ss_dssp BC-----CCEEEEECTTSSEEEEEETTTTE--EEEEEECTTTCSE
T ss_pred ccccccccceEEEECCCCCEEEEecCCCCc--EEEEEEcccccce
Confidence 0000001111233 346676666543 332 5677776555534
No 171
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=95.88 E-value=0.6 Score=42.18 Aligned_cols=186 Identities=9% Similarity=-0.021 Sum_probs=95.5
Q ss_pred eEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEcc-CCEEEEEeCccCCCCCCCceEEEEECCCC
Q 040145 106 WLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPR-EGTLFVCGGMVSDVDCPLDLVLKYEMQKN 184 (402)
Q Consensus 106 ~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~d~~t~ 184 (402)
.+++.++.+. .+.+||..+.+........... ....++.... ++.+++.|+.+ ..+.+||..++
T Consensus 87 ~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~l~s~~~d-------~~i~iwd~~~~ 151 (383)
T 3ei3_B 87 TTVAVGSKGG----DIILWDYDVQNKTSFIQGMGPG----DAITGMKFNQFNTNQLFVSSIR-------GATTLRDFSGS 151 (383)
T ss_dssp TEEEEEEBTS----CEEEEETTSTTCEEEECCCSTT----CBEEEEEEETTEEEEEEEEETT-------TEEEEEETTSC
T ss_pred CEEEEEcCCC----eEEEEeCCCcccceeeecCCcC----CceeEEEeCCCCCCEEEEEeCC-------CEEEEEECCCC
Confidence 4555554433 3778888877655433221111 2223333433 45677777652 37889999876
Q ss_pred ceeecCCCccc-ccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCE-EEEE
Q 040145 185 RWTVMNKMITA-RSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGK-LLVT 259 (402)
Q Consensus 185 ~W~~~~~~~~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~-ly~~ 259 (402)
....+...... ....+++.. ++..++.|+. ...+.+||.....-..+.. .......+.+ ++. +++.
T Consensus 152 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~---h~~~v~~~~~~~~~~~~l~s 222 (383)
T 3ei3_B 152 VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS------TGRLLLLGLDGHEIFKEKL---HKAKVTHAEFNPRCDWLMAT 222 (383)
T ss_dssp EEEEEECCCCSSCCEEEEEEETTTTEEEEEET------TSEEEEEETTSCEEEEEEC---SSSCEEEEEECSSCTTEEEE
T ss_pred ceEEEeccCCCCCCeEEEEECCCCCEEEEECC------CCCEEEEECCCCEEEEecc---CCCcEEEEEECCCCCCEEEE
Confidence 65554332211 112223332 4566666665 4578899985443333321 1122222333 455 6777
Q ss_pred cccccCCccCCcEEEEeCCCCCe--eeccccccCCCceeEEEE---CCEEEEEeccCCcEEEEEeCCCC
Q 040145 260 EGWLWPFFVSPRGQVYDPSTDNW--ESMAVGLREGWTGSSVVV---YEHLFVVSELERMKLKVYDPSTD 323 (402)
Q Consensus 260 gG~~~~~~~~~~~~~yd~~~~~W--~~~~~~~~~~~~~~~~~~---~~~l~~~gg~~~~~~~~yd~~~~ 323 (402)
|+.+ ..+.+||+.+..- ..+.. ......-..+.+ ++.+++.|+. ...+.+||..+.
T Consensus 223 ~~~d------~~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~l~~~~~-d~~i~iwd~~~~ 283 (383)
T 3ei3_B 223 SSVD------ATVKLWDLRNIKDKNSYIAE-MPHEKPVNAAYFNPTDSTKLLTTDQ-RNEIRVYSSYDW 283 (383)
T ss_dssp EETT------SEEEEEEGGGCCSTTCEEEE-EECSSCEEEEEECTTTSCEEEEEES-SSEEEEEETTBT
T ss_pred EeCC------CEEEEEeCCCCCcccceEEE-ecCCCceEEEEEcCCCCCEEEEEcC-CCcEEEEECCCC
Confidence 7653 3688999876321 11111 111111112232 5677777665 568999998764
No 172
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=95.87 E-value=0.41 Score=42.05 Aligned_cols=117 Identities=15% Similarity=0.071 Sum_probs=55.1
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccC--CCCC--CCceEEEE
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVS--DVDC--PLDLVLKY 179 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~--~~~~--~~~~~~~~ 179 (402)
+..+|+... ....+.++|+.+.+-...-..+.+........+.+....+..||+...... .... ....+.+|
T Consensus 45 g~~l~v~~~----~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~ 120 (337)
T 1pby_B 45 GRIAYATVN----KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120 (337)
T ss_dssp SSEEEEEET----TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred CCEEEEEeC----CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEE
Confidence 446676652 233588899887764332112110000001122222222346777642100 0000 13589999
Q ss_pred ECCCCceeecCCCcccccceEEEEE-CC-EEEEEcCCCCCCCCCCeeEEEcCCCCcEE
Q 040145 180 EMQKNRWTVMNKMITARSFFASGVI-GG-MIYVAGGSSADLFELDSAEVLDPVKGNWR 235 (402)
Q Consensus 180 d~~t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 235 (402)
|..+++....-+. ......++.. ++ .||+.+ ..+.+||..+++-.
T Consensus 121 d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~---------~~i~~~d~~~~~~~ 167 (337)
T 1pby_B 121 DAETLSRRKAFEA--PRQITMLAWARDGSKLYGLG---------RDLHVMDPEAGTLV 167 (337)
T ss_dssp ETTTTEEEEEEEC--CSSCCCEEECTTSSCEEEES---------SSEEEEETTTTEEE
T ss_pred ECCCCcEEEEEeC--CCCcceeEECCCCCEEEEeC---------CeEEEEECCCCcEe
Confidence 9988765432111 1122223332 33 466662 35889999887643
No 173
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=95.86 E-value=1.8 Score=43.74 Aligned_cols=182 Identities=12% Similarity=0.113 Sum_probs=100.5
Q ss_pred eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCC----ceee-cC-CCcccccceEEEE--ECCEEEEEcCCCCCCCC
Q 040145 149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKN----RWTV-MN-KMITARSFFASGV--IGGMIYVAGGSSADLFE 220 (402)
Q Consensus 149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~----~W~~-~~-~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~ 220 (402)
+.+....++.||+.-.. ...++++++... .... +. .+.. ..++++ .+++||+.-..
T Consensus 428 gl~~d~~~~~lY~sD~~-------~~~I~~~~l~g~~~~~~~~~vi~~~l~~---P~GLAvD~~~~~LY~tD~~------ 491 (791)
T 3m0c_C 428 ALDTEVASNRIYWSDLS-------QRMICSTQLDRAHGVSSYDTVISRDIQA---PDGLAVDWIHSNIYWTDSV------ 491 (791)
T ss_dssp EEEEETTTTEEEEEETT-------TTEEEEEEC--------CEEEECSSCSC---CCEEEEETTTTEEEEEETT------
T ss_pred EEeecccCCeeEEeecc-------ceeEEEEeccCCCCCcceeEEEecCCCC---cceeeeeecCCcEEEEecC------
Confidence 33343346789988543 346888887642 2222 22 1211 223444 46799998653
Q ss_pred CCeeEEEcCCCCcEEEcC--CCCCCCcceeEEE--ECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCc-e
Q 040145 221 LDSAEVLDPVKGNWRTIA--SMGTNMASYDAAV--LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWT-G 295 (402)
Q Consensus 221 ~~~~~~yd~~t~~W~~~~--~~~~~~~~~~~~~--~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~-~ 295 (402)
...|+++++....-+.+. .+..+ .+.++ .+|.||+.--.. ...|+++++....-..+.. ....+- +
T Consensus 492 ~~~I~v~~ldG~~~~~l~~~~l~~P---~gIaVDp~~g~LYwtD~g~-----~~~I~~~~~dG~~~~~lv~-~~l~~P~G 562 (791)
T 3m0c_C 492 LGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWGT-----PAKIKKGGLNGVDIYSLVT-ENIQWPNG 562 (791)
T ss_dssp TTEEEEEETTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEECSS-----SCEEEEEETTSCCEEEEEC-SSCSCEEE
T ss_pred CCeEEEEeCCCCeEEEEEeCCCCCc---ceEEEecCCCCEEEecCCC-----CCeEEEEecCCCceEEEEe-CCCCCceE
Confidence 567999998866555442 22222 12333 258899975211 1478899887554333322 111111 1
Q ss_pred eEEE-ECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCce
Q 040145 296 SSVV-VYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLH 358 (402)
Q Consensus 296 ~~~~-~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~ 358 (402)
.++- .+++||+.-.. ...|+++|++...=..+.. ........+++.+.+++||+.--..+
T Consensus 563 LavD~~~~~LYwaD~~-~~~I~~~d~dG~~~~~v~~--~~~~l~~P~glav~~~~lYwtD~~~~ 623 (791)
T 3m0c_C 563 ITLDLLSGRLYWVDSK-LHSISSIDVNGGNRKTILE--DEKRLAHPFSLAVFEDKVFWTDIINE 623 (791)
T ss_dssp EEEETTTTEEEEEETT-TTEEEEEETTSCSCEEEEE--CTTTTSSEEEEEEETTEEEEEETTTT
T ss_pred EEEecCCCeEEEEeCC-CCcEEEEecCCCceEEEec--CCCccCCCCEEEEeCCEEEEEECCCC
Confidence 2222 37899998543 6789999997654333321 11122345688889999999875443
No 174
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=95.86 E-value=0.86 Score=40.11 Aligned_cols=151 Identities=11% Similarity=0.067 Sum_probs=73.2
Q ss_pred EEEEccCCE-EEEEeCccCCCCCCCceEEEEEC-CCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEE
Q 040145 150 CVSIPREGT-LFVCGGMVSDVDCPLDLVLKYEM-QKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVL 227 (402)
Q Consensus 150 ~~~~~~~~~-i~v~GG~~~~~~~~~~~~~~~d~-~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y 227 (402)
++.+..++. .++.|+.+ ..+.+||. .++....+........-..+....+.+++.|+. ...+.+|
T Consensus 61 ~~~~~~~~~~~l~~~~~d-------g~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~------d~~i~iw 127 (342)
T 1yfq_A 61 CCNFIDNTDLQIYVGTVQ-------GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW------DGLIEVI 127 (342)
T ss_dssp EEEEEESSSEEEEEEETT-------SCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEET------TSEEEEE
T ss_pred EEEECCCCCcEEEEEcCC-------CeEEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcC------CCeEEEE
Confidence 333333566 67777652 27999999 888765554311122222333332555555554 4567888
Q ss_pred cCCCCc-------EEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCC-CC--eeeccccccCCCceeE
Q 040145 228 DPVKGN-------WRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPST-DN--WESMAVGLREGWTGSS 297 (402)
Q Consensus 228 d~~t~~-------W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~-~~--W~~~~~~~~~~~~~~~ 297 (402)
|..+.. .+.+..+.....-.......+. ++.|+.+ ..+..||+.+ .. ........... ....
T Consensus 128 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~-i~~i 199 (342)
T 1yfq_A 128 DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR-LIVGMNN------SQVQWFRLPLCEDDNGTIEESGLKYQ-IRDV 199 (342)
T ss_dssp CHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE-EEEEEST------TEEEEEESSCCTTCCCEEEECSCSSC-EEEE
T ss_pred cccccccccccccCCeeeEEeeCCceEEEEecCCc-EEEEeCC------CeEEEEECCccccccceeeecCCCCc-eeEE
Confidence 876400 1122222222122222333444 4444432 3789999887 43 22222111111 1111
Q ss_pred EEE--CCEEEEEeccCCcEEEEEeCCC
Q 040145 298 VVV--YEHLFVVSELERMKLKVYDPST 322 (402)
Q Consensus 298 ~~~--~~~l~~~gg~~~~~~~~yd~~~ 322 (402)
+.. ++.++++|+. ...+.+||...
T Consensus 200 ~~~~~~~~~l~~~~~-dg~i~i~~~~~ 225 (342)
T 1yfq_A 200 ALLPKEQEGYACSSI-DGRVAVEFFDD 225 (342)
T ss_dssp EECSGGGCEEEEEET-TSEEEEEECCT
T ss_pred EECCCCCCEEEEEec-CCcEEEEEEcC
Confidence 222 5677777765 44566666544
No 175
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=95.82 E-value=1.5 Score=42.47 Aligned_cols=192 Identities=11% Similarity=-0.064 Sum_probs=96.1
Q ss_pred CeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCC
Q 040145 105 PWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKN 184 (402)
Q Consensus 105 ~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~ 184 (402)
+.+|+.. .....+.++|+.+++-...-+.. . ..++.+....+..+|+.+. .+.+.+||+.+.
T Consensus 167 ~~~~V~~----~~~~~V~viD~~t~~v~~~i~~g--~----~p~~v~~SpDGr~lyv~~~--------dg~V~viD~~~~ 228 (567)
T 1qks_A 167 NLFSVTL----RDAGQIALIDGSTYEIKTVLDTG--Y----AVHISRLSASGRYLFVIGR--------DGKVNMIDLWMK 228 (567)
T ss_dssp GEEEEEE----TTTTEEEEEETTTCCEEEEEECS--S----CEEEEEECTTSCEEEEEET--------TSEEEEEETTSS
T ss_pred ceEEEEe----CCCCeEEEEECCCCeEEEEEeCC--C----CccceEECCCCCEEEEEcC--------CCeEEEEECCCC
Confidence 4566654 23446889999987654321122 1 1134443333456777542 237999999622
Q ss_pred ceeecCCCcccccceEEEEE-----CC-EEEEEcCCCCCCCCCCeeEEEcCCCCcEEE-cC--CCC--------CCCcce
Q 040145 185 RWTVMNKMITARSFFASGVI-----GG-MIYVAGGSSADLFELDSAEVLDPVKGNWRT-IA--SMG--------TNMASY 247 (402)
Q Consensus 185 ~W~~~~~~~~~r~~~~~~~~-----~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~--~~~--------~~~~~~ 247 (402)
+-+.+..++.......+++. ++ .+|+..-. ...+.++|..|.+=.. ++ .++ .+|...
T Consensus 229 t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~------~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~ 302 (567)
T 1qks_A 229 EPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYW------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA 302 (567)
T ss_dssp SCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred CCcEeEEEecCCCCceeEEccccCCCCCEEEEEEcc------CCeEEEEECCCCcEEEEEeccccccccccccCCCceEE
Confidence 22333333333333344444 44 56666543 4678899987765322 11 111 112111
Q ss_pred eEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE--EEECCEEEEEeccCCcEEEEEeCCCCce
Q 040145 248 DAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS--VVVYEHLFVVSELERMKLKVYDPSTDSW 325 (402)
Q Consensus 248 ~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~--~~~~~~l~~~gg~~~~~~~~yd~~~~~W 325 (402)
..+..++..+++.-. ....+...|..+.....+.. .+...+-.. ..-+++.++++....+.+.++|.++++-
T Consensus 303 i~~s~~~~~~vv~~~-----~~g~v~~vd~~~~~~~~v~~-i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl 376 (567)
T 1qks_A 303 ILASHYRPEFIVNVK-----ETGKILLVDYTDLNNLKTTE-ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL 376 (567)
T ss_dssp EEECSSSSEEEEEET-----TTTEEEEEETTCSSEEEEEE-EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred EEEcCCCCEEEEEec-----CCCeEEEEecCCCccceeee-eeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE
Confidence 111223333333211 12367888887665444332 222222222 2335665555555578999999998864
Q ss_pred e
Q 040145 326 E 326 (402)
Q Consensus 326 ~ 326 (402)
.
T Consensus 377 ~ 377 (567)
T 1qks_A 377 V 377 (567)
T ss_dssp E
T ss_pred E
Confidence 3
No 176
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=95.81 E-value=1.7 Score=43.16 Aligned_cols=248 Identities=13% Similarity=0.081 Sum_probs=120.1
Q ss_pred CCeEEEEEEeC-CCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCC-----CCCCCceEE
Q 040145 104 DPWLFVFAFHK-CTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSD-----VDCPLDLVL 177 (402)
Q Consensus 104 ~~~l~~~gg~~-~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~-----~~~~~~~~~ 177 (402)
++..+++..+. +.....++++|..+++..... ++ . ..+...+...+..||........ .......++
T Consensus 139 Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~--~----~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~~v~ 211 (693)
T 3iuj_A 139 DGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LK--D----VKFSGISWLGNEGFFYSSYDKPDGSELSARTDQHKVY 211 (693)
T ss_dssp TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EE--E----EESCCCEEETTTEEEEEESSCCC-------CCCCEEE
T ss_pred CCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cC--C----ceeccEEEeCCCEEEEEEecCcccccccccCCCcEEE
Confidence 34444444332 334467889999998865431 11 0 10122223224455554332110 012345788
Q ss_pred EEECCCCce--eecCCCcc--cccceEEEE-ECCE-EEEEcCCCCCCCCCCeeEEEcCCCC--cEEEcCCCCCCCcceeE
Q 040145 178 KYEMQKNRW--TVMNKMIT--ARSFFASGV-IGGM-IYVAGGSSADLFELDSAEVLDPVKG--NWRTIASMGTNMASYDA 249 (402)
Q Consensus 178 ~~d~~t~~W--~~~~~~~~--~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~~~~~~~ 249 (402)
+++..|..- +.+-..+. +.....+.. -+++ |++...... . .+.++++|..+. .|+.+..-...... ..
T Consensus 212 ~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~--~-~~~i~~~d~~~~~~~~~~l~~~~~~~~~-~~ 287 (693)
T 3iuj_A 212 FHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST--S-GNRLYVKDLSQENAPLLTVQGDLDADVS-LV 287 (693)
T ss_dssp EEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS--S-CCEEEEEETTSTTCCCEEEECSSSSCEE-EE
T ss_pred EEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC--C-CcEEEEEECCCCCCceEEEeCCCCceEE-EE
Confidence 888877643 12222221 222223332 2444 333322211 1 368899998765 67776432222111 12
Q ss_pred EEECCEEEEEcccccCCccCCcEEEEeCCCC---CeeeccccccCCCceeEEEECCEEEEEeccC-CcEEEEEeCCCCce
Q 040145 250 AVLDGKLLVTEGWLWPFFVSPRGQVYDPSTD---NWESMAVGLREGWTGSSVVVYEHLFVVSELE-RMKLKVYDPSTDSW 325 (402)
Q Consensus 250 ~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~---~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~-~~~~~~yd~~~~~W 325 (402)
...++.+|+....+.. ...++.+|+.+. .|+.+.+..... . .....++.|++....+ ...++++|.+....
T Consensus 288 ~~~g~~l~~~t~~~~~---~~~l~~~d~~~~~~~~~~~l~~~~~~~-~-~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~ 362 (693)
T 3iuj_A 288 DNKGSTLYLLTNRDAP---NRRLVTVDAANPGPAHWRDLIPERQQV-L-TVHSGSGYLFAEYMVDATARVEQFDYEGKRV 362 (693)
T ss_dssp EEETTEEEEEECTTCT---TCEEEEEETTSCCGGGCEEEECCCSSC-E-EEEEETTEEEEEEEETTEEEEEEECTTSCEE
T ss_pred eccCCEEEEEECCCCC---CCEEEEEeCCCCCccccEEEecCCCCE-E-EEEEECCEEEEEEEECCeeEEEEEECCCCee
Confidence 3347889888764322 247899998764 488765422222 2 2234466666554332 34789999987655
Q ss_pred eecCCCCCCccccCCeEEE-E-eCCEEEEEecCceeeeEEEEecccccc
Q 040145 326 ETIEGPPLPEQICKPFAVN-A-CDCRVYVVGRNLHVAVGHITRLSTSEK 372 (402)
Q Consensus 326 ~~~~~~~~p~~~~~~~~~~-~-~~~~i~v~GG~~~~~~~~v~~~~~~~~ 372 (402)
..+. +|.. .....+. . -++.|++..... ....+++.+|....
T Consensus 363 ~~l~---~p~~-~~~~~~~~~~d~~~l~~~~ss~-~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 363 REVA---LPGL-GSVSGFNGKHDDPALYFGFENY-AQPPTLYRFEPKSG 406 (693)
T ss_dssp EEEC---CSSS-SEEEECCCCTTCSCEEEEEECS-SSCCEEEEECTTTC
T ss_pred EEee---cCCC-ceEEeeecCCCCCEEEEEecCC-CCCCEEEEEECCCC
Confidence 5553 4321 1100111 1 134455443322 22356788876444
No 177
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.80 E-value=0.77 Score=48.92 Aligned_cols=206 Identities=11% Similarity=0.018 Sum_probs=102.0
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccc-
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSF- 198 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~- 198 (402)
.+.+||..+.+-... +.... ....++++..++..++.|+.+ ..+.+||..+++.... +......
T Consensus 638 ~i~vw~~~~~~~~~~--~~~h~----~~v~~~~~s~~~~~l~s~~~d-------~~v~vwd~~~~~~~~~--~~~~~~~v 702 (1249)
T 3sfz_A 638 TLQVFKAETGEKLLD--IKAHE----DEVLCCAFSSDDSYIATCSAD-------KKVKIWDSATGKLVHT--YDEHSEQV 702 (1249)
T ss_dssp CEEEEETTTCCEEEE--ECCCS----SCEEEEEECTTSSEEEEEETT-------SEEEEEETTTCCEEEE--EECCSSCE
T ss_pred eEEEEECCCCCEEEE--eccCC----CCEEEEEEecCCCEEEEEeCC-------CeEEEEECCCCceEEE--EcCCCCcE
Confidence 377888877653221 11111 223445554567777777652 2799999998764321 1111111
Q ss_pred eEEEEE---CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEE
Q 040145 199 FASGVI---GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQ 273 (402)
Q Consensus 199 ~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~ 273 (402)
.++... ++.+++.|+. ...+.+||..++.-... +.........+.+ ++.+++.|+.+ ..+.
T Consensus 703 ~~~~~~~~~~~~~l~sg~~------d~~v~vwd~~~~~~~~~--~~~h~~~v~~~~~sp~~~~l~s~s~d------g~v~ 768 (1249)
T 3sfz_A 703 NCCHFTNKSNHLLLATGSN------DFFLKLWDLNQKECRNT--MFGHTNSVNHCRFSPDDELLASCSAD------GTLR 768 (1249)
T ss_dssp EEEEECSSSSCCEEEEEET------TSCEEEEETTSSSEEEE--ECCCSSCEEEEEECSSTTEEEEEESS------SEEE
T ss_pred EEEEEecCCCceEEEEEeC------CCeEEEEECCCcchhhe--ecCCCCCEEEEEEecCCCEEEEEECC------CeEE
Confidence 222222 3345556654 34588999988764322 1111112222222 56666766643 3678
Q ss_pred EEeCCCCCeee-ccc--------cccC----CCceeEEEECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCC
Q 040145 274 VYDPSTDNWES-MAV--------GLRE----GWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKP 340 (402)
Q Consensus 274 ~yd~~~~~W~~-~~~--------~~~~----~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~ 340 (402)
.||..+..-.. +.. ..+. ........-++..+++++ ...+..||..+....... .........
T Consensus 769 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--~~~v~~~d~~~~~~~~~~--~~~~~~~v~ 844 (1249)
T 3sfz_A 769 LWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA--KNKVLLFDIHTSGLLAEI--HTGHHSTIQ 844 (1249)
T ss_dssp EEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE--TTEEEEEETTTCCEEEEE--ECSSSSCCC
T ss_pred EEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc--CCcEEEEEecCCCceeEE--cCCCCCceE
Confidence 88887654221 110 0000 000011123566666655 358899999877654332 111111222
Q ss_pred eEEEEeCCEEEEEecCce
Q 040145 341 FAVNACDCRVYVVGRNLH 358 (402)
Q Consensus 341 ~~~~~~~~~i~v~GG~~~ 358 (402)
......++.++++|+.+.
T Consensus 845 ~~~~sp~~~~l~~~~~dg 862 (1249)
T 3sfz_A 845 YCDFSPYDHLAVIALSQY 862 (1249)
T ss_dssp EEEECSSTTEEEEECSSS
T ss_pred EEEEcCCCCEEEEEeCCC
Confidence 333445677777777544
No 178
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=95.79 E-value=0.34 Score=43.16 Aligned_cols=104 Identities=6% Similarity=0.004 Sum_probs=58.4
Q ss_pred CEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcc-cccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCc
Q 040145 157 GTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMIT-ARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGN 233 (402)
Q Consensus 157 ~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 233 (402)
+.+++.|+.+ ..+.+||..+++-.. .+.. ...-.++... ++.+++.|+. ...+.+||..++.
T Consensus 85 ~~~l~~~~~d-------g~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~ 149 (366)
T 3k26_A 85 HPLLAVAGSR-------GIIRIINPITMQCIK--HYVGHGNAINELKFHPRDPNLLLSVSK------DHALRLWNIQTDT 149 (366)
T ss_dssp CEEEEEEETT-------CEEEEECTTTCCEEE--EEESCCSCEEEEEECSSCTTEEEEEET------TSCEEEEETTTTE
T ss_pred CCEEEEecCC-------CEEEEEEchhceEee--eecCCCCcEEEEEECCCCCCEEEEEeC------CCeEEEEEeecCe
Confidence 5778887752 279999998765322 1111 1111223332 4567777765 3468899998876
Q ss_pred EEEc-CCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCC
Q 040145 234 WRTI-ASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDN 281 (402)
Q Consensus 234 W~~~-~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~ 281 (402)
-... ..+.........+.+ ++..++.|+.+ ..+.+||+.+.+
T Consensus 150 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~ 194 (366)
T 3k26_A 150 LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD------HSLKLWRINSKR 194 (366)
T ss_dssp EEEEECSTTSCSSCEEEEEECTTSSEEEEEETT------SCEEEEESCSHH
T ss_pred EEEEecccccccCceeEEEECCCCCEEEEecCC------CCEEEEECCCCc
Confidence 4332 222222223333333 56666766653 368899987653
No 179
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=95.75 E-value=0.99 Score=40.01 Aligned_cols=203 Identities=9% Similarity=-0.005 Sum_probs=99.3
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEE--ccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccccc
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSI--PREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARS 197 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~--~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~ 197 (402)
.+.+||..+.+...+.... ....++.. ..++.+++.|+.+ ..+.+||..+++-.. .+.....
T Consensus 109 ~v~iwd~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~l~~~~~d-------g~i~vwd~~~~~~~~--~~~~~~~ 172 (368)
T 3mmy_A 109 TAKMWDLSSNQAIQIAQHD-------APVKTIHWIKAPNYSCVMTGSWD-------KTLKFWDTRSSNPMM--VLQLPER 172 (368)
T ss_dssp EEEEEETTTTEEEEEEECS-------SCEEEEEEEECSSCEEEEEEETT-------SEEEEECSSCSSCSE--EEECSSC
T ss_pred cEEEEEcCCCCceeecccc-------CceEEEEEEeCCCCCEEEEccCC-------CcEEEEECCCCcEEE--EEecCCC
Confidence 4778888887755432211 22233333 3467778887752 279999988765221 1122222
Q ss_pred ceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCCCCcceeEEEECC----EEEEEcccccCCccCCc
Q 040145 198 FFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGTNMASYDAAVLDG----KLLVTEGWLWPFFVSPR 271 (402)
Q Consensus 198 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~g----~ly~~gG~~~~~~~~~~ 271 (402)
..........+++.++ ...+.+||..+.. +..+...............+. ..++.|+.+ ..
T Consensus 173 ~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------g~ 239 (368)
T 3mmy_A 173 CYCADVIYPMAVVATA-------ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE------GR 239 (368)
T ss_dssp EEEEEEETTEEEEEEG-------GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT------SE
T ss_pred ceEEEecCCeeEEEeC-------CCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCC------Cc
Confidence 3344445565555443 3557888887653 333332222222222222222 225555543 36
Q ss_pred EEEEeCCCCCe-eeccccccCCC-------------ceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCc
Q 040145 272 GQVYDPSTDNW-ESMAVGLREGW-------------TGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPE 335 (402)
Q Consensus 272 ~~~yd~~~~~W-~~~~~~~~~~~-------------~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~ 335 (402)
+.+||..+..- ..+.. ..... .-..+.+ ++++++.|+. ...+.+||..+.+-...- ...
T Consensus 240 i~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-dg~i~iwd~~~~~~~~~~--~~~- 314 (368)
T 3mmy_A 240 VAIHYINPPNPAKDNFT-FKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS-DGRFSFWDKDARTKLKTS--EQL- 314 (368)
T ss_dssp EEEEESSCSCHHHHSEE-EECSEEC----CCCEEECCEEEEEECTTTCCEEEEET-TSCEEEEETTTTEEEEEC--CCC-
T ss_pred EEEEecCCCCcccccee-eeeeecccccccccccccceEEEEEecCCCEEEEEcc-CCeEEEEECCCCcEEEEe--cCC-
Confidence 78888876532 11110 00000 0111223 5666667665 457999999876433221 111
Q ss_pred cccCCeEEE-EeCCEEEEEecCc
Q 040145 336 QICKPFAVN-ACDCRVYVVGRNL 357 (402)
Q Consensus 336 ~~~~~~~~~-~~~~~i~v~GG~~ 357 (402)
. ..-.+++ ..+++.++.|+.+
T Consensus 315 ~-~~v~~~~~s~~g~~l~~~s~d 336 (368)
T 3mmy_A 315 D-QPISACCFNHNGNIFAYASSY 336 (368)
T ss_dssp S-SCEEEEEECTTSSCEEEEECC
T ss_pred C-CCceEEEECCCCCeEEEEecc
Confidence 1 1112333 3467777777643
No 180
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=95.74 E-value=0.95 Score=39.74 Aligned_cols=181 Identities=9% Similarity=0.041 Sum_probs=84.6
Q ss_pred cCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE---CCEEEEEcCCCCCCCCCCeeEEEcCCC
Q 040145 155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI---GGMIYVAGGSSADLFELDSAEVLDPVK 231 (402)
Q Consensus 155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t 231 (402)
..+..++.|+.+ ..+.+||.....-.................. .+.+++.|+. ...+.+||..+
T Consensus 138 ~~~~~l~s~s~d-------~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~------d~~i~i~d~~~ 204 (340)
T 4aow_A 138 SDNRQIVSGSRD-------KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW------DKLVKVWNLAN 204 (340)
T ss_dssp TTSSCEEEEETT-------SCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEET------TSCEEEEETTT
T ss_pred ecCccceeecCC-------CeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcC------CCEEEEEECCC
Confidence 355666666652 2577788765432222111111111122221 2345566654 34578899988
Q ss_pred CcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEec
Q 040145 232 GNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSE 309 (402)
Q Consensus 232 ~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg 309 (402)
..-... +........++.+ ++++++.|+.+ ..+..||+.+.+- +............+...+..++.++
T Consensus 205 ~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~s~D------g~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~ 274 (340)
T 4aow_A 205 CKLKTN--HIGHTGYLNTVTVSPDGSLCASGGKD------GQAMLWDLNEGKH--LYTLDGGDIINALCFSPNRYWLCAA 274 (340)
T ss_dssp TEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT------CEEEEEETTTTEE--EEEEECSSCEEEEEECSSSSEEEEE
T ss_pred CceeeE--ecCCCCcEEEEEECCCCCEEEEEeCC------CeEEEEEeccCce--eeeecCCceEEeeecCCCCceeecc
Confidence 764332 1111112222323 67777777753 3688899876532 2211111111112233344445555
Q ss_pred cCCcEEEEEeCCCCceee-cCCCCCCc----cccCCeEEE-EeCCEEEEEecCcee
Q 040145 310 LERMKLKVYDPSTDSWET-IEGPPLPE----QICKPFAVN-ACDCRVYVVGRNLHV 359 (402)
Q Consensus 310 ~~~~~~~~yd~~~~~W~~-~~~~~~p~----~~~~~~~~~-~~~~~i~v~GG~~~~ 359 (402)
. ...+.+||..+..-.. +....... ....-.+++ ..+++.++.||.++.
T Consensus 275 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~ 329 (340)
T 4aow_A 275 T-GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL 329 (340)
T ss_dssp E-TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSC
T ss_pred C-CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 4 4578899988764322 22101100 001111222 346788888886654
No 181
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.71 E-value=0.46 Score=47.40 Aligned_cols=212 Identities=11% Similarity=0.089 Sum_probs=109.6
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCC----ceee-cC-CCc
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKN----RWTV-MN-KMI 193 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~----~W~~-~~-~~~ 193 (402)
.+..+++.......+..... ...+.+....++.||+.--. ...|+++++.+. .-.. +. .+.
T Consensus 387 ~I~~id~~~~~~~~~~~~~~------~p~gla~d~~~~~Ly~sD~~-------~~~I~~~~~~g~~~~~~~~~~i~~~~~ 453 (699)
T 1n7d_A 387 EVRKMTLDRSEYTSLIPNLR------NVVALDTEVASNRIYWSDLS-------QRMICSTQLDRAHGVSSYDTVISRDIQ 453 (699)
T ss_dssp C-CEECTTSCCEECCSCCCT------TCCCCEEETTTTEEEECCTT-------TTSBEEEESCCCCC-CCCCCBCCSCC-
T ss_pred ceEEEeCCCCcceeeeccCc------ceEEEccccccCeEEEEecC-------CCeEEEEecCCCCCCcceEEEEeCCCC
Confidence 35566776666654432221 12333433346788886432 347888988751 1111 11 111
Q ss_pred ccccceEEEE--ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCC--CCCCCcceeEEE--ECCEEEEEcccccCCc
Q 040145 194 TARSFFASGV--IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIAS--MGTNMASYDAAV--LDGKLLVTEGWLWPFF 267 (402)
Q Consensus 194 ~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~--~~~~~~~~~~~~--~~g~ly~~gG~~~~~~ 267 (402)
. ..++++ .+++||+.-.. ...++++|+....-+.+.. +..++ ..++ .++.||+.....
T Consensus 454 ~---P~glavD~~~g~LY~tD~~------~~~I~v~d~dg~~~~~l~~~~~~~P~---giavDp~~g~ly~td~~~---- 517 (699)
T 1n7d_A 454 A---PDGLAVDWIHSNIYWTDSV------LGTVSVADTKGVKRKTLFREQGSKPR---AIVVDPVHGFMYWTDWGT---- 517 (699)
T ss_dssp ----CCCEECCCSSSBCEECCTT------TSCEEEEBSSSCCEEEECCCSSCCCC---CEECCSSSSCCEECCCSS----
T ss_pred C---cceEEEEeeCCcEEEEecc------CCeEEEEecCCCceEEEEeCCCCCcc---eEEEccCCCcEEEcccCC----
Confidence 1 122333 46788987432 4568999988765444422 22221 2222 257888764211
Q ss_pred cCCcEEEEeCCCCCeeeccccccCCCceeEEE--ECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE
Q 040145 268 VSPRGQVYDPSTDNWESMAVGLREGWTGSSVV--VYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA 345 (402)
Q Consensus 268 ~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~--~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~ 345 (402)
...|+++++....-..+.. ....+....++ .+++||+.-.. ...|+++|+....-..+.. .+.......++++
T Consensus 518 -~~~I~~~~~dG~~~~~l~~-~~l~~PnGlavd~~~~~LY~aD~~-~~~I~~~d~dG~~~~~~~~--~~~~~~~P~glav 592 (699)
T 1n7d_A 518 -PAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGRLYWVDSK-LHSISSIDVNGGNRKTILE--DEKRLAHPFSLAV 592 (699)
T ss_dssp -SCCEEBCCSSSCCCCEESC-SSCSSCCCEEECTTTCCEEEEETT-TTEEEEECSSSSCCEEECC--CSSSCSSCCCCEE
T ss_pred -CCeEEEEeCCCCCeeEEEe-CCCCCccEEEEeccCCEEEEEecC-CCeEEEEccCCCceEEEEe--cCCcCCCceEeEE
Confidence 1468888876443332221 01111111222 25889988643 6789999997644444431 1122234567777
Q ss_pred eCCEEEEEecCceeeeEEEEeccc
Q 040145 346 CDCRVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 346 ~~~~i~v~GG~~~~~~~~v~~~~~ 369 (402)
.++.||+.-...+. |..+++
T Consensus 593 d~~~lywtd~~~~~----V~~~d~ 612 (699)
T 1n7d_A 593 FEDKVFWTDIINEA----IFSANR 612 (699)
T ss_dssp ETTEEEEECSTTTC----EEEEET
T ss_pred ECCEEEEEeCCCCe----EEEEEc
Confidence 88899998754333 555554
No 182
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=95.70 E-value=0.62 Score=41.27 Aligned_cols=190 Identities=11% Similarity=0.066 Sum_probs=94.0
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccC---CEEEEEeCccCCCCCCCceEEEEE
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPRE---GTLFVCGGMVSDVDCPLDLVLKYE 180 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~---~~i~v~GG~~~~~~~~~~~~~~~d 180 (402)
+..+++.++.. .....+.+||..+.+.......... ....++.+..+ +.+++.|+.+ ..+.+||
T Consensus 30 ~~~l~~~~s~~-~~d~~v~iw~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~l~~~~~d-------g~i~iwd 96 (357)
T 3i2n_A 30 SAKFVTMGNFA-RGTGVIQLYEIQHGDLKLLREIEKA-----KPIKCGTFGATSLQQRYLATGDFG-------GNLHIWN 96 (357)
T ss_dssp SSEEEEEEC---CCCEEEEEEEECSSSEEEEEEEEES-----SCEEEEECTTCCTTTCCEEEEETT-------SCEEEEC
T ss_pred CceEEEecCcc-CCCcEEEEEeCCCCcccceeeeccc-----CcEEEEEEcCCCCCCceEEEecCC-------CeEEEEe
Confidence 33555555321 1234578888887765433222210 12233444333 4777777652 2688999
Q ss_pred CCCCc--eeecCCCcccccceEEEE-------ECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCCC-Cccee
Q 040145 181 MQKNR--WTVMNKMITARSFFASGV-------IGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGTN-MASYD 248 (402)
Q Consensus 181 ~~t~~--W~~~~~~~~~r~~~~~~~-------~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~-~~~~~ 248 (402)
..++. -..+.... ..-..+.. -++..++.|+. ...+.+||..+.. ...+...... .....
T Consensus 97 ~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~s~~~~~l~~~~~------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 168 (357)
T 3i2n_A 97 LEAPEMPVYSVKGHK--EIINAIDGIGGLGIGEGAPEIVTGSR------DGTVKVWDPRQKDDPVANMEPVQGENKRDCW 168 (357)
T ss_dssp TTSCSSCSEEECCCS--SCEEEEEEESGGGCC-CCCEEEEEET------TSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred CCCCCccEEEEEecc--cceEEEeeccccccCCCccEEEEEeC------CCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence 88765 11221111 11111211 24556666665 3468899988764 3333322221 11122
Q ss_pred EEE------ECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE----CCEEEEEeccCCcEEEEE
Q 040145 249 AAV------LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV----YEHLFVVSELERMKLKVY 318 (402)
Q Consensus 249 ~~~------~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~----~~~l~~~gg~~~~~~~~y 318 (402)
.+. -++.+++.|+.+ ..+..||+.+.+-..... ... .....+.. ++..+++|+. ...+.+|
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~-~~~-~v~~~~~~~~~~~~~~l~~~~~-dg~i~i~ 239 (357)
T 3i2n_A 169 TVAFGNAYNQEERVVCAGYDN------GDIKLFDLRNMALRWETN-IKN-GVCSLEFDRKDISMNKLVATSL-EGKFHVF 239 (357)
T ss_dssp EEEEECCCC-CCCEEEEEETT------SEEEEEETTTTEEEEEEE-CSS-CEEEEEESCSSSSCCEEEEEES-TTEEEEE
T ss_pred EEEEEeccCCCCCEEEEEccC------CeEEEEECccCceeeecC-CCC-ceEEEEcCCCCCCCCEEEEECC-CCeEEEE
Confidence 222 367777777643 378999998765322211 111 11112222 5666666665 5578888
Q ss_pred eCCCC
Q 040145 319 DPSTD 323 (402)
Q Consensus 319 d~~~~ 323 (402)
|..+.
T Consensus 240 d~~~~ 244 (357)
T 3i2n_A 240 DMRTQ 244 (357)
T ss_dssp EEEEE
T ss_pred eCcCC
Confidence 87653
No 183
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=95.64 E-value=0.29 Score=43.27 Aligned_cols=116 Identities=10% Similarity=0.111 Sum_probs=63.6
Q ss_pred EEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccccc-ceEEEEE---CCEEEEEcCCCCCCCCCCeeE
Q 040145 150 CVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARS-FFASGVI---GGMIYVAGGSSADLFELDSAE 225 (402)
Q Consensus 150 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~-~~~~~~~---~~~iyv~GG~~~~~~~~~~~~ 225 (402)
++.+..++..++.|+.+ ..+.+||..++....+..+..... -.+++.. ++.+++.|+. -..+.
T Consensus 18 ~v~~s~~g~~lasgs~D-------~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~------D~~v~ 84 (316)
T 3bg1_A 18 DAQMDYYGTRLATCSSD-------RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSY------DRKVI 84 (316)
T ss_dssp EEEECGGGCEEEEEETT-------TEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEET------TSCEE
T ss_pred EeeEcCCCCEEEEEeCC-------CeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEEC------CCEEE
Confidence 34443467777777752 278889988765433322221111 1223332 2566777765 34688
Q ss_pred EEcCCCCcEEEcCCCCCCCcceeEEEE--C--CEEEEEcccccCCccCCcEEEEeCCCC-Ceee
Q 040145 226 VLDPVKGNWRTIASMGTNMASYDAAVL--D--GKLLVTEGWLWPFFVSPRGQVYDPSTD-NWES 284 (402)
Q Consensus 226 ~yd~~t~~W~~~~~~~~~~~~~~~~~~--~--g~ly~~gG~~~~~~~~~~~~~yd~~~~-~W~~ 284 (402)
+||..++.|..+..+.........+.+ + +.+++.|+.+ ..+..||..+. .|..
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D------~~i~lwd~~~~~~~~~ 142 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD------GAISLLTYTGEGQWEV 142 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSS------SCEEEEEECSSSCEEE
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCC------CCEEEEecCCCCCcce
Confidence 999988776544333222222223333 2 5667777653 36778887765 5643
No 184
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.64 E-value=1.8 Score=42.16 Aligned_cols=115 Identities=15% Similarity=0.176 Sum_probs=67.9
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEEC-CCCc--eeecCCCccc-----c---cceEEEE--ECCE----EEEEcCCCCCC
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEM-QKNR--WTVMNKMITA-----R---SFFASGV--IGGM----IYVAGGSSADL 218 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~-~t~~--W~~~~~~~~~-----r---~~~~~~~--~~~~----iyv~GG~~~~~ 218 (402)
++.||+.+.. ...++.+|. .|++ |+.-...... . ...+.++ .+++ ||+...
T Consensus 62 ~g~vyv~~~~-------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~----- 129 (599)
T 1w6s_A 62 DGKMYIHTSF-------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL----- 129 (599)
T ss_dssp TTEEEEECST-------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-----
T ss_pred CCEEEEEeCC-------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC-----
Confidence 8999998652 236999999 8885 8875433211 1 1123444 5666 887643
Q ss_pred CCCCeeEEEcCCCCc--EEEcCCCCCC--CcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCC--eeec
Q 040145 219 FELDSAEVLDPVKGN--WRTIASMGTN--MASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WESM 285 (402)
Q Consensus 219 ~~~~~~~~yd~~t~~--W~~~~~~~~~--~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~~ 285 (402)
...+..+|..|++ |+.-..-... .....-++.+++||+-.+..+ ......+..||.++++ |+.-
T Consensus 130 --dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e-~g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 130 --DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAE-LGVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp --TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGG-GTCCCEEEEEETTTCCEEEEEE
T ss_pred --CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccc-cCCCCeEEEEECCCCcEEEEEc
Confidence 3568999998876 8753211111 111233456888887443111 1112478999998875 8653
No 185
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=95.60 E-value=1.2 Score=40.01 Aligned_cols=211 Identities=12% Similarity=0.086 Sum_probs=117.7
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF 199 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~ 199 (402)
.+..+++.......+..-. ....+.+.-..++.||+..-. ...++++++.....+.+..... ....
T Consensus 54 ~I~~i~~~g~~~~~~~~~~------~~~~~l~~d~~~~~ly~~D~~-------~~~I~r~~~~g~~~~~~~~~~~-~~p~ 119 (349)
T 3v64_C 54 DIRQVLPHRSEYTLLLNNL------ENAIALDFHHRRELVFWSDVT-------LDRILRANLNGSNVEEVVSTGL-ESPG 119 (349)
T ss_dssp CEEEECTTSCCEEEEECSC------SCEEEEEEETTTTEEEEEETT-------TTEEEEEETTSCSCEEEECSSC-SCCC
T ss_pred ceEEEeCCCCeeEEeecCC------CceEEEEEeccccEEEEEecc-------CCceEEEecCCCCceEEEeCCC-CCcc
Confidence 3677788776665543211 022333333347899987532 3479999998776444321111 1113
Q ss_pred EEEE--ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcC--CCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEE
Q 040145 200 ASGV--IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIA--SMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQ 273 (402)
Q Consensus 200 ~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~ 273 (402)
++++ .++.||+.-.. ...++++++....-+.+. .+..| ...++- ++.||+..... ...++
T Consensus 120 glavd~~~g~ly~~d~~------~~~I~~~~~dG~~~~~l~~~~l~~P---~~iavdp~~g~ly~td~~~-----~~~I~ 185 (349)
T 3v64_C 120 GLAVDWVHDKLYWTDSG------TSRIEVANLDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWGN-----TPRIE 185 (349)
T ss_dssp EEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECTTCSCE---EEEEEETTTTEEEEEECSS-----SCEEE
T ss_pred EEEEecCCCeEEEEcCC------CCeEEEEcCCCCceEEEEeCCCCCc---ceEEEecCcCeEEEeccCC-----CCEEE
Confidence 4444 47899998653 467888988765433332 22222 123333 68899875321 24799
Q ss_pred EEeCCCCCeeeccccccCCCceeEEE--ECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEE
Q 040145 274 VYDPSTDNWESMAVGLREGWTGSSVV--VYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVY 351 (402)
Q Consensus 274 ~yd~~~~~W~~~~~~~~~~~~~~~~~--~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~ 351 (402)
++++....-..+.. ....+....+. .+++||+.... ...|+++|++...-..+....+ ....++++.++.||
T Consensus 186 r~~~dG~~~~~~~~-~~~~~PnGla~d~~~~~lY~aD~~-~~~I~~~~~dG~~~~~~~~~~~----~~P~giav~~~~ly 259 (349)
T 3v64_C 186 ASSMDGSGRRIIAD-THLFWPNGLTIDYAGRRMYWVDAK-HHVIERANLDGSHRKAVISQGL----PHPFAITVFEDSLY 259 (349)
T ss_dssp EEETTSCSCEESCC-SSCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTSCSCEEEECSSC----SSEEEEEEETTEEE
T ss_pred EEeCCCCCcEEEEE-CCCCCcceEEEeCCCCEEEEEECC-CCEEEEEeCCCCceEEEEeCCC----CCceEEEEECCEEE
Confidence 99987644333321 11111112222 37899988543 5689999987643333321122 34567777899999
Q ss_pred EEecCceeeeEEEEecc
Q 040145 352 VVGRNLHVAVGHITRLS 368 (402)
Q Consensus 352 v~GG~~~~~~~~v~~~~ 368 (402)
+.--..+. |..++
T Consensus 260 ~td~~~~~----V~~~~ 272 (349)
T 3v64_C 260 WTDWHTKS----INSAN 272 (349)
T ss_dssp EEETTTTE----EEEEE
T ss_pred EecCCCCe----EEEEE
Confidence 98754433 45554
No 186
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.52 E-value=0.78 Score=41.43 Aligned_cols=198 Identities=10% Similarity=-0.048 Sum_probs=98.5
Q ss_pred CceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEcc-CCE-EEEEeCccCCCCCCCceEEEEECCCCceeecCCCcc
Q 040145 117 GKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPR-EGT-LFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMIT 194 (402)
Q Consensus 117 ~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~-~~~-i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~ 194 (402)
....++.+|..+.+...+.... .......... ++. |++... . ........++++|..++.++.+.. ..
T Consensus 166 ~~~~l~~~d~~~g~~~~~~~~~-------~~~~~~~~sp~dg~~l~~~~~-~-~~~~~~~~l~~~d~~~~~~~~l~~-~~ 235 (396)
T 3c5m_A 166 PTCRLIKVDIETGELEVIHQDT-------AWLGHPIYRPFDDSTVGFCHE-G-PHDLVDARMWLVNEDGSNVRKIKE-HA 235 (396)
T ss_dssp CCEEEEEEETTTCCEEEEEEES-------SCEEEEEEETTEEEEEEEEEC-S-CSSSCSCCCEEEETTSCCCEESSC-CC
T ss_pred CcceEEEEECCCCcEEeeccCC-------cccccceECCCCCCEEEEEec-C-CCCCCCceEEEEECCCCceeEeec-cC
Confidence 3446788898887766554211 2223333333 344 444432 1 111123579999998887777654 11
Q ss_pred cc-cceEEEEE-CCE-EEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE-CCEEEEEcccccC-----
Q 040145 195 AR-SFFASGVI-GGM-IYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL-DGKLLVTEGWLWP----- 265 (402)
Q Consensus 195 ~r-~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~ly~~gG~~~~----- 265 (402)
+. ........ +++ |++.+...+ .. ...++++|..++..+.+...+.. . ....- +|+++++.+...+
T Consensus 236 ~~~~~~~~~~spdg~~l~~~~~~~~-~~-~~~l~~~d~~~g~~~~l~~~~~~--~-~~~s~~dg~~l~~~~~~~p~~~~~ 310 (396)
T 3c5m_A 236 EGESCTHEFWIPDGSAMAYVSYFKG-QT-DRVIYKANPETLENEEVMVMPPC--S-HLMSNFDGSLMVGDGCDAPVDVAD 310 (396)
T ss_dssp TTEEEEEEEECTTSSCEEEEEEETT-TC-CEEEEEECTTTCCEEEEEECCSE--E-EEEECSSSSEEEEEECCC------
T ss_pred CCccccceEECCCCCEEEEEecCCC-Cc-cceEEEEECCCCCeEEeeeCCCC--C-CCccCCCCceEEEecCCcceeecc
Confidence 11 11122222 444 444432111 11 24499999998887766544421 1 22333 7777666442110
Q ss_pred -----CccCCcEEEEeCCCCCeeeccccccC----------CCceeEEEECCEEEEEecc--CCcEEEEEeCCCCceeec
Q 040145 266 -----FFVSPRGQVYDPSTDNWESMAVGLRE----------GWTGSSVVVYEHLFVVSEL--ERMKLKVYDPSTDSWETI 328 (402)
Q Consensus 266 -----~~~~~~~~~yd~~~~~W~~~~~~~~~----------~~~~~~~~~~~~l~~~gg~--~~~~~~~yd~~~~~W~~~ 328 (402)
......++.+|+.+++...+...... ........-+|+.+++... ....++.+|..+..++.+
T Consensus 311 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~~~ 390 (396)
T 3c5m_A 311 ADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKHLE 390 (396)
T ss_dssp ----CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC---
T ss_pred ccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccccc
Confidence 01124789999988876655431110 0111122235543334332 245788999888777665
Q ss_pred C
Q 040145 329 E 329 (402)
Q Consensus 329 ~ 329 (402)
.
T Consensus 391 ~ 391 (396)
T 3c5m_A 391 H 391 (396)
T ss_dssp -
T ss_pred c
Confidence 4
No 187
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=95.49 E-value=1.1 Score=38.72 Aligned_cols=173 Identities=13% Similarity=0.066 Sum_probs=80.2
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCc-eeecCCCcccccc
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNR-WTVMNKMITARSF 198 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~-W~~~~~~~~~r~~ 198 (402)
.+.+||..+..-...-... . ....++....++.+++.|+.+ ..+.+||..... .+.+..+......
T Consensus 40 ~v~vw~~~~~~~~~~~~~~--~----~~v~~~~~~~~~~~l~~~~~d-------g~i~~~~~~~~~~~~~~~~~~~~~~~ 106 (313)
T 3odt_A 40 TVRLWSKDDQWLGTVVYTG--Q----GFLNSVCYDSEKELLLFGGKD-------TMINGVPLFATSGEDPLYTLIGHQGN 106 (313)
T ss_dssp EEEEEEESSSEEEEEEEEC--S----SCEEEEEEETTTTEEEEEETT-------SCEEEEETTCCTTSCC-CEECCCSSC
T ss_pred cEEEEECCCCEEEEEeecC--C----ccEEEEEECCCCCEEEEecCC-------CeEEEEEeeecCCCCcccchhhcccC
Confidence 3677887665533221111 0 223344444567777777653 257777765532 2222222212222
Q ss_pred eEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEE-EE-CCEEEEEcccccCCccCCcEEEEe
Q 040145 199 FASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAA-VL-DGKLLVTEGWLWPFFVSPRGQVYD 276 (402)
Q Consensus 199 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~-~~-~g~ly~~gG~~~~~~~~~~~~~yd 276 (402)
......++..++.|+. ...+.+||........ .....+ ..... .- ++..++.++.+ ..+..||
T Consensus 107 i~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~-~~~~~~--v~~~~~~~~~~~~l~~~~~d------~~i~i~d 171 (313)
T 3odt_A 107 VCSLSFQDGVVISGSW------DKTAKVWKEGSLVYNL-QAHNAS--VWDAKVVSFSENKFLTASAD------KTIKLWQ 171 (313)
T ss_dssp EEEEEEETTEEEEEET------TSEEEEEETTEEEEEE-ECCSSC--EEEEEEEETTTTEEEEEETT------SCEEEEE
T ss_pred EEEEEecCCEEEEEeC------CCCEEEEcCCcEEEec-ccCCCc--eeEEEEccCCCCEEEEEECC------CCEEEEe
Confidence 2222335555666665 4567888832222211 111111 11122 22 56666666643 3678888
Q ss_pred CCCCCeeeccccccCCCceeE-EEECCEEEEEeccCCcEEEEEeCCCCc
Q 040145 277 PSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 277 ~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
..+..- .+.. ......... ..-++. ++.|+. ...+.+||..+.+
T Consensus 172 ~~~~~~-~~~~-~~~~~i~~~~~~~~~~-~~~~~~-dg~i~i~d~~~~~ 216 (313)
T 3odt_A 172 NDKVIK-TFSG-IHNDVVRHLAVVDDGH-FISCSN-DGLIKLVDMHTGD 216 (313)
T ss_dssp TTEEEE-EECS-SCSSCEEEEEEEETTE-EEEEET-TSEEEEEETTTCC
T ss_pred cCceEE-EEec-cCcccEEEEEEcCCCe-EEEccC-CCeEEEEECCchh
Confidence 332211 1111 111111222 334677 555554 5689999998754
No 188
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=95.48 E-value=1.4 Score=43.98 Aligned_cols=138 Identities=9% Similarity=-0.068 Sum_probs=67.9
Q ss_pred eeEEEcCCC-CcEEEcCCCCCCCc--ceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCC----ce
Q 040145 223 SAEVLDPVK-GNWRTIASMGTNMA--SYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGW----TG 295 (402)
Q Consensus 223 ~~~~yd~~t-~~W~~~~~~~~~~~--~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~----~~ 295 (402)
.++++|..+ +.-..+........ ..... -+|+..++...+.. .....++.+|+.+++...+.......+ ..
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~-~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~ 341 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRD-QKKLDLVEVTLASNQQRVLAHETSPTWVPLHNS 341 (741)
T ss_dssp EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETT-SSEEEEEEEETTTCCEEEEEEEECSSCCCCCSC
T ss_pred EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEeccc-CCeEEEEEEECCCCceEEEEEcCCCCcCCcCCc
Confidence 788889888 76554432211111 11223 45554443332111 112478999999888766543222211 12
Q ss_pred eEEEECCEEEEEeccC-CcEEEEEeCCCCceeecCCCCCCccccCCeEE--EEeCC-EEEEEecCceeeeEEEEecc
Q 040145 296 SSVVVYEHLFVVSELE-RMKLKVYDPSTDSWETIEGPPLPEQICKPFAV--NACDC-RVYVVGRNLHVAVGHITRLS 368 (402)
Q Consensus 296 ~~~~~~~~l~~~gg~~-~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~--~~~~~-~i~v~GG~~~~~~~~v~~~~ 368 (402)
....-+|++++.++.+ ...++.+|.... ...+.. -. .....+ ...++ .|++.+.........+|..+
T Consensus 342 ~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~--~~---~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 342 LRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTH--GN---WSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp CEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCC--SS---SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred eEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeee--cc---eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 2223367766665544 357899987666 555542 11 111122 23344 56666654432234455554
No 189
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=95.48 E-value=1.2 Score=38.99 Aligned_cols=197 Identities=11% Similarity=-0.001 Sum_probs=97.9
Q ss_pred CeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCC
Q 040145 105 PWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKN 184 (402)
Q Consensus 105 ~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~ 184 (402)
..||+.+. ....++.|++. .+...+.... ......+...++.+|+.... ...+.+||+. +
T Consensus 57 ~~l~~~d~----~~~~i~~~~~~-g~~~~~~~~~-------~~~~gl~~d~dG~l~v~~~~-------~~~v~~~~~~-g 116 (305)
T 3dr2_A 57 RTLVWSDL----VGRRVLGWRED-GTVDVLLDAT-------AFTNGNAVDAQQRLVHCEHG-------RRAITRSDAD-G 116 (305)
T ss_dssp TEEEEEET----TTTEEEEEETT-SCEEEEEESC-------SCEEEEEECTTSCEEEEETT-------TTEEEEECTT-S
T ss_pred CEEEEEEC----CCCEEEEEeCC-CCEEEEeCCC-------CccceeeECCCCCEEEEECC-------CCEEEEECCC-C
Confidence 44666542 22347778874 4443332111 11233344456788876432 2368899986 6
Q ss_pred ceeecCCCccc----ccceEEEEECCEEEEE----cCCCC-------CCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeE
Q 040145 185 RWTVMNKMITA----RSFFASGVIGGMIYVA----GGSSA-------DLFELDSAEVLDPVKGNWRTIASMGTNMASYDA 249 (402)
Q Consensus 185 ~W~~~~~~~~~----r~~~~~~~~~~~iyv~----GG~~~-------~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~ 249 (402)
+.+.+...... +....+..-++.||+. |.... .......+++||+.+++.+.+.. ......
T Consensus 117 ~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~----~~~p~g 192 (305)
T 3dr2_A 117 QAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMAD----LDHPNG 192 (305)
T ss_dssp CEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEE----ESSEEE
T ss_pred CEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEec----CCCCcc
Confidence 66554321111 1111222236788885 32210 11113578999998888776541 112222
Q ss_pred EEE--CCE-EEEEcccccCCccCCcEEEEeCCCCCeeeccc--cccCCC-ceeEEEECCEEEEEeccCCcEEEEEeCCCC
Q 040145 250 AVL--DGK-LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV--GLREGW-TGSSVVVYEHLFVVSELERMKLKVYDPSTD 323 (402)
Q Consensus 250 ~~~--~g~-ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~--~~~~~~-~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~ 323 (402)
..+ +++ ||+....... ...+.+++||...+....... ...... .+..+--+|+||+..+ ..+.+||++..
T Consensus 193 l~~spdg~~lyv~~~~~~~-~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~---~gv~~~~~~g~ 268 (305)
T 3dr2_A 193 LAFSPDEQTLYVSQTPEQG-HGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSG---TGVCVFDSDGQ 268 (305)
T ss_dssp EEECTTSSEEEEEECCC----CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCS---SEEEEECTTSC
T ss_pred eEEcCCCCEEEEEecCCcC-CCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecC---CcEEEECCCCC
Confidence 222 454 7776442110 012478899987554221111 011111 1222334688887542 36999999776
Q ss_pred ceeecC
Q 040145 324 SWETIE 329 (402)
Q Consensus 324 ~W~~~~ 329 (402)
.-..+.
T Consensus 269 ~~~~~~ 274 (305)
T 3dr2_A 269 LLGHIP 274 (305)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 555554
No 190
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=95.47 E-value=0.23 Score=45.15 Aligned_cols=151 Identities=12% Similarity=0.138 Sum_probs=76.7
Q ss_pred eEEEEcc-CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCC-----------c-ccccceEEEEE--CCEEEEEcC
Q 040145 149 RCVSIPR-EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKM-----------I-TARSFFASGVI--GGMIYVAGG 213 (402)
Q Consensus 149 ~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~-----------~-~~r~~~~~~~~--~~~iyv~GG 213 (402)
.++.+.. ++.+++.|+.+ ..+.+||..++........ . ....-.++... ++.+++.|+
T Consensus 47 ~~~~~s~~~~~~l~~~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 119 (408)
T 4a11_B 47 NTLDIEPVEGRYMLSGGSD-------GVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS 119 (408)
T ss_dssp EEEEECTTTCCEEEEEETT-------SCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred EEEEEecCCCCEEEEEcCC-------CeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence 3344433 56777777652 2688999887653221110 0 11111222332 445666666
Q ss_pred CCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE----CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccc
Q 040145 214 SSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL----DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGL 289 (402)
Q Consensus 214 ~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~----~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~ 289 (402)
. ...+.+||..+..-...-..+... ...... ++.+++.|+.+ ..+..||+.+.+-...-...
T Consensus 120 ~------d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~~v~~~d~~~~~~~~~~~~~ 185 (408)
T 4a11_B 120 F------DKTLKVWDTNTLQTADVFNFEETV--YSHHMSPVSTKHCLVAVGTRG------PKVQLCDLKSGSCSHILQGH 185 (408)
T ss_dssp T------TSEEEEEETTTTEEEEEEECSSCE--EEEEECSSCSSCCEEEEEESS------SSEEEEESSSSCCCEEECCC
T ss_pred C------CCeEEEeeCCCCccceeccCCCce--eeeEeecCCCCCcEEEEEcCC------CeEEEEeCCCcceeeeecCC
Confidence 5 456889999887654332222221 111111 34466666643 36899998876432211101
Q ss_pred cCCCceeEEEE--CCE-EEEEeccCCcEEEEEeCCCC
Q 040145 290 REGWTGSSVVV--YEH-LFVVSELERMKLKVYDPSTD 323 (402)
Q Consensus 290 ~~~~~~~~~~~--~~~-l~~~gg~~~~~~~~yd~~~~ 323 (402)
.. .-.++.+ ++. +++.|+. ...+.+||..+.
T Consensus 186 -~~-~v~~~~~~~~~~~ll~~~~~-dg~i~i~d~~~~ 219 (408)
T 4a11_B 186 -RQ-EILAVSWSPRYDYILATASA-DSRVKLWDVRRA 219 (408)
T ss_dssp -CS-CEEEEEECSSCTTEEEEEET-TSCEEEEETTCS
T ss_pred -CC-cEEEEEECCCCCcEEEEEcC-CCcEEEEECCCC
Confidence 11 1112222 333 6767665 457889998754
No 191
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=95.40 E-value=1.3 Score=38.90 Aligned_cols=153 Identities=12% Similarity=0.125 Sum_probs=75.2
Q ss_pred eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEc
Q 040145 149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLD 228 (402)
Q Consensus 149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd 228 (402)
.++.+..++.+++.|+.+ ..+.+++.........................+..++.|+. -..+.+||
T Consensus 90 ~~~~~s~dg~~l~s~~~d-------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~------d~~~~~~d 156 (340)
T 4aow_A 90 SDVVISSDGQFALSGSWD-------GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR------DKTIKLWN 156 (340)
T ss_dssp EEEEECTTSSEEEEEETT-------SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET------TSCEEEEC
T ss_pred EEEEECCCCCEEEEEccc-------ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecC------CCeEEEEE
Confidence 344454567777777763 26778888776544322211111111112223455556654 23467778
Q ss_pred CCCCcEEEcCCCCCCCcceeEEEE----CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CC
Q 040145 229 PVKGNWRTIASMGTNMASYDAAVL----DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YE 302 (402)
Q Consensus 229 ~~t~~W~~~~~~~~~~~~~~~~~~----~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~ 302 (402)
.....-..... .........+.+ .+.+++.++.+ ..+..||..+.+-...-.... ... .++.+ ++
T Consensus 157 ~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~s~~~d------~~i~i~d~~~~~~~~~~~~h~-~~v-~~~~~s~~~ 227 (340)
T 4aow_A 157 TLGVCKYTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGWD------KLVKVWNLANCKLKTNHIGHT-GYL-NTVTVSPDG 227 (340)
T ss_dssp TTSCEEEEECS-SSCSSCEEEEEECSCSSSCEEEEEETT------SCEEEEETTTTEEEEEECCCS-SCE-EEEEECTTS
T ss_pred eCCCceEEEEe-ccccCcccceEEccCCCCcEEEEEcCC------CEEEEEECCCCceeeEecCCC-CcE-EEEEECCCC
Confidence 76543222211 111111122222 23455555542 368889988765432211111 111 12222 67
Q ss_pred EEEEEeccCCcEEEEEeCCCCc
Q 040145 303 HLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 303 ~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
.+++.|+. ...+.+||..+..
T Consensus 228 ~~l~s~s~-Dg~i~iwd~~~~~ 248 (340)
T 4aow_A 228 SLCASGGK-DGQAMLWDLNEGK 248 (340)
T ss_dssp SEEEEEET-TCEEEEEETTTTE
T ss_pred CEEEEEeC-CCeEEEEEeccCc
Confidence 77777776 4578899987654
No 192
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=95.38 E-value=2.4 Score=41.95 Aligned_cols=152 Identities=13% Similarity=0.144 Sum_probs=78.7
Q ss_pred eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcc-cccceEEEEE-CCEEEEEcCCCCCCCCCCeeEE
Q 040145 149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMIT-ARSFFASGVI-GGMIYVAGGSSADLFELDSAEV 226 (402)
Q Consensus 149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~-~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~ 226 (402)
.++++..++.+++.|+.+ ..+.+||..++.-... +.. ...-.+++.. ++..++.|+. -..+.+
T Consensus 434 ~~v~~s~~g~~l~sgs~D-------g~v~vwd~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~s~------D~~i~i 498 (694)
T 3dm0_A 434 EDVVLSSDGQFALSGSWD-------GELRLWDLAAGVSTRR--FVGHTKDVLSVAFSLDNRQIVSASR------DRTIKL 498 (694)
T ss_dssp EEEEECTTSSEEEEEETT-------SEEEEEETTTTEEEEE--EECCSSCEEEEEECTTSSCEEEEET------TSCEEE
T ss_pred EEEEECCCCCEEEEEeCC-------CcEEEEECCCCcceeE--EeCCCCCEEEEEEeCCCCEEEEEeC------CCEEEE
Confidence 445555577788888763 2799999988753221 111 1111222222 4555666665 345778
Q ss_pred EcCCCCcEEEcCC-CCCCCcceeEEEE--CC--EEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE-
Q 040145 227 LDPVKGNWRTIAS-MGTNMASYDAAVL--DG--KLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV- 300 (402)
Q Consensus 227 yd~~t~~W~~~~~-~~~~~~~~~~~~~--~g--~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~- 300 (402)
||.....-..+.. ....+....++.+ ++ .+++.|+.+ ..+.+||+.+.+-...-... .... .++.+
T Consensus 499 wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------~~v~vwd~~~~~~~~~~~~h-~~~v-~~v~~s 570 (694)
T 3dm0_A 499 WNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWD------KTVKVWNLSNCKLRSTLAGH-TGYV-STVAVS 570 (694)
T ss_dssp ECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETT------SCEEEEETTTCCEEEEECCC-SSCE-EEEEEC
T ss_pred EECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCC------CeEEEEECCCCcEEEEEcCC-CCCE-EEEEEe
Confidence 8876543222221 1122222233333 22 355555543 36889999876533221101 1111 12222
Q ss_pred -CCEEEEEeccCCcEEEEEeCCCCc
Q 040145 301 -YEHLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 301 -~~~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
++++++.|+. ...+.+||..+.+
T Consensus 571 pdg~~l~sg~~-Dg~i~iwd~~~~~ 594 (694)
T 3dm0_A 571 PDGSLCASGGK-DGVVLLWDLAEGK 594 (694)
T ss_dssp TTSSEEEEEET-TSBCEEEETTTTE
T ss_pred CCCCEEEEEeC-CCeEEEEECCCCc
Confidence 6777777775 4578899998764
No 193
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.37 E-value=2.2 Score=41.36 Aligned_cols=120 Identities=14% Similarity=0.169 Sum_probs=66.6
Q ss_pred CCCeEEEEEEeCCCCceeEEEeec-CCCc--EEeCCCCCCCCC---CC-CCCceEEEEccCCEEEEEeCccCCCCCCCce
Q 040145 103 KDPWLFVFAFHKCTGKIQWQVLDL-THYC--WHTIPAMPCKDK---VC-PHGFRCVSIPREGTLFVCGGMVSDVDCPLDL 175 (402)
Q Consensus 103 ~~~~l~~~gg~~~~~~~~~~~~d~-~~~~--W~~l~~~~~~~~---~~-~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~ 175 (402)
.++.+|+.... ...++++|. .+.+ |+.-........ .+ ....+.++. ++.||+... ...
T Consensus 61 ~~g~vyv~~~~----~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~v~~~--------dg~ 126 (571)
T 2ad6_A 61 IGDMMYVHSAF----PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQA--------NGH 126 (571)
T ss_dssp ETTEEEEECST----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECT--------TSE
T ss_pred ECCEEEEEeCC----CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEE--CCEEEEEeC--------CCE
Confidence 47778876521 235899999 7765 876433221000 00 011122333 888888643 237
Q ss_pred EEEEECCCCc--eeec-CCCccc-ccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEc
Q 040145 176 VLKYEMQKNR--WTVM-NKMITA-RSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTI 237 (402)
Q Consensus 176 ~~~~d~~t~~--W~~~-~~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~ 237 (402)
++.+|..|++ |+.- ...... ....+.++.++++|+..+..+... ...+..||..|++ |+.-
T Consensus 127 l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~-~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 127 LLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGV-RGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp EEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTC-CCEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCC-CCEEEEEECCCCcEEEEEc
Confidence 9999999985 8753 221111 112233456888887654321111 4578999999875 8653
No 194
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=95.33 E-value=0.94 Score=40.58 Aligned_cols=134 Identities=15% Similarity=0.147 Sum_probs=68.9
Q ss_pred eEEEEECCCCceeecCCCc---ccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEE
Q 040145 175 LVLKYEMQKNRWTVMNKMI---TARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAA 250 (402)
Q Consensus 175 ~~~~~d~~t~~W~~~~~~~---~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~ 250 (402)
.+.+||..+++-....... ....-.+++.. +++.++.|+. -..+.++|..+++-.. .+.........+
T Consensus 104 ~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~------d~~i~iwd~~~~~~~~--~~~~h~~~V~~~ 175 (344)
T 4gqb_B 104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSK------DICIKVWDLAQQVVLS--SYRAHAAQVTCV 175 (344)
T ss_dssp EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEET------TSCEEEEETTTTEEEE--EECCCSSCEEEE
T ss_pred EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeC------CCeEEEEECCCCcEEE--EEcCcCCceEEE
Confidence 7899999887532221111 11111233332 5677777775 3468899998875322 222222222222
Q ss_pred EE--CC-EEEEEcccccCCccCCcEEEEeCCCCCee-eccccccCCCceeEEEE---CCEEEEEeccCCcEEEEEeCCCC
Q 040145 251 VL--DG-KLLVTEGWLWPFFVSPRGQVYDPSTDNWE-SMAVGLREGWTGSSVVV---YEHLFVVSELERMKLKVYDPSTD 323 (402)
Q Consensus 251 ~~--~g-~ly~~gG~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~~~~~~~~~---~~~l~~~gg~~~~~~~~yd~~~~ 323 (402)
.+ ++ .+++.|+.+ ..+.+||+.+.+-. .+.. ........++.+ ++++++.|+. ...|.+||..+.
T Consensus 176 ~~~~~~~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~l~sg~~-dg~v~~wd~~~~ 247 (344)
T 4gqb_B 176 AASPHKDSVFLSCSED------NRILLWDTRCPKPASQIGC-SAPGYLPTSLAWHPQQSEVFVFGDE-NGTVSLVDTKST 247 (344)
T ss_dssp EECSSCTTEEEEEETT------SCEEEEETTSSSCEEECC-----CCCEEEEEECSSCTTEEEEEET-TSEEEEEESCC-
T ss_pred EecCCCCCceeeeccc------cccccccccccceeeeeec-ceeeccceeeeecCCCCcceEEecc-CCcEEEEECCCC
Confidence 22 33 466767653 36889999876533 2221 111111112222 4667777765 457899999765
Q ss_pred c
Q 040145 324 S 324 (402)
Q Consensus 324 ~ 324 (402)
+
T Consensus 248 ~ 248 (344)
T 4gqb_B 248 S 248 (344)
T ss_dssp -
T ss_pred c
Confidence 3
No 195
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=95.33 E-value=0.47 Score=43.34 Aligned_cols=152 Identities=18% Similarity=0.253 Sum_probs=78.7
Q ss_pred eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEE
Q 040145 149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVL 227 (402)
Q Consensus 149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~y 227 (402)
.++++..++..++.|+.+ ..+.+||..+++-...-.- ....-.++... ++..++.|+. -..+.+|
T Consensus 127 ~~v~~s~dg~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s~------d~~v~iw 192 (393)
T 1erj_A 127 RSVCFSPDGKFLATGAED-------RLIRIWDIENRKIVMILQG-HEQDIYSLDYFPSGDKLVSGSG------DRTVRIW 192 (393)
T ss_dssp EEEEECTTSSEEEEEETT-------SCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEET------TSEEEEE
T ss_pred EEEEECCCCCEEEEEcCC-------CeEEEEECCCCcEEEEEcc-CCCCEEEEEEcCCCCEEEEecC------CCcEEEE
Confidence 345555577777777752 2789999988754321110 11111223332 4555566654 4568899
Q ss_pred cCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeee-cccccc--CCCcee--EEEE
Q 040145 228 DPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES-MAVGLR--EGWTGS--SVVV 300 (402)
Q Consensus 228 d~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~--~~~~~~--~~~~ 300 (402)
|..++.....-.... .....+.. ++++++.|+.+ ..+..||..++.-.. +..... ...... .+.+
T Consensus 193 d~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~s~d------~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 264 (393)
T 1erj_A 193 DLRTGQCSLTLSIED--GVTTVAVSPGDGKYIAAGSLD------RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF 264 (393)
T ss_dssp ETTTTEEEEEEECSS--CEEEEEECSTTCCEEEEEETT------SCEEEEETTTCCEEEEEC------CCCSSCEEEEEE
T ss_pred ECCCCeeEEEEEcCC--CcEEEEEECCCCCEEEEEcCC------CcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEE
Confidence 998876443211111 11122222 57777777754 368899988765332 211000 111111 2233
Q ss_pred --CCEEEEEeccCCcEEEEEeCCCC
Q 040145 301 --YEHLFVVSELERMKLKVYDPSTD 323 (402)
Q Consensus 301 --~~~l~~~gg~~~~~~~~yd~~~~ 323 (402)
++..++.|+. ...+.+||..+.
T Consensus 265 ~~~g~~l~s~s~-d~~v~~wd~~~~ 288 (393)
T 1erj_A 265 TRDGQSVVSGSL-DRSVKLWNLQNA 288 (393)
T ss_dssp CTTSSEEEEEET-TSEEEEEEC---
T ss_pred CCCCCEEEEEeC-CCEEEEEECCCC
Confidence 5677777665 557888888653
No 196
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=95.30 E-value=1.3 Score=38.31 Aligned_cols=142 Identities=12% Similarity=0.128 Sum_probs=66.0
Q ss_pred CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeee
Q 040145 205 GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES 284 (402)
Q Consensus 205 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~ 284 (402)
++..++.|+. ...+.+||..+.. .................-++. ++.|+.+ ..+..||..+++-..
T Consensus 154 ~~~~l~~~~~------d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~~~~~~-~~~~~~d------g~i~i~d~~~~~~~~ 219 (313)
T 3odt_A 154 SENKFLTASA------DKTIKLWQNDKVI-KTFSGIHNDVVRHLAVVDDGH-FISCSND------GLIKLVDMHTGDVLR 219 (313)
T ss_dssp TTTEEEEEET------TSCEEEEETTEEE-EEECSSCSSCEEEEEEEETTE-EEEEETT------SEEEEEETTTCCEEE
T ss_pred CCCEEEEEEC------CCCEEEEecCceE-EEEeccCcccEEEEEEcCCCe-EEEccCC------CeEEEEECCchhhhh
Confidence 5566666665 3457888833221 122211111111222233677 5555542 368999998764222
Q ss_pred ccccccCCCceeEEEE-CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEE-EeCCEEEEEecCceeeeE
Q 040145 285 MAVGLREGWTGSSVVV-YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLHVAVG 362 (402)
Q Consensus 285 ~~~~~~~~~~~~~~~~-~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~~~~ 362 (402)
.-. .........+.. +++ ++.|+. ...+.+||..+.+....- ..+. ....++. ..+++ ++.|+.++.
T Consensus 220 ~~~-~~~~~i~~~~~~~~~~-l~~~~~-dg~v~iwd~~~~~~~~~~--~~~~--~~i~~~~~~~~~~-~~~~~~dg~--- 288 (313)
T 3odt_A 220 TYE-GHESFVYCIKLLPNGD-IVSCGE-DRTVRIWSKENGSLKQVI--TLPA--ISIWSVDCMSNGD-IIVGSSDNL--- 288 (313)
T ss_dssp EEE-CCSSCEEEEEECTTSC-EEEEET-TSEEEEECTTTCCEEEEE--ECSS--SCEEEEEECTTSC-EEEEETTSC---
T ss_pred hhh-cCCceEEEEEEecCCC-EEEEec-CCEEEEEECCCCceeEEE--eccC--ceEEEEEEccCCC-EEEEeCCCc---
Confidence 111 111111111222 454 445554 568999999887644332 1221 1112333 34666 455665443
Q ss_pred EEEecccccc
Q 040145 363 HITRLSTSEK 372 (402)
Q Consensus 363 ~v~~~~~~~~ 372 (402)
+..+|....
T Consensus 289 -i~iw~~~~~ 297 (313)
T 3odt_A 289 -VRIFSQEKS 297 (313)
T ss_dssp -EEEEESCGG
T ss_pred -EEEEeCCCC
Confidence 555554333
No 197
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=95.29 E-value=1.8 Score=39.91 Aligned_cols=191 Identities=12% Similarity=0.064 Sum_probs=101.7
Q ss_pred EEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEE--ECCEEEEEcCCCCCCCCCCeeEEE
Q 040145 150 CVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGV--IGGMIYVAGGSSADLFELDSAEVL 227 (402)
Q Consensus 150 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~y 227 (402)
.+++..++.||+.... ...+.++|+.++.-+.+.... ...+ .+. -++.+|+..... ...++.+
T Consensus 135 ~la~d~~g~lyv~d~~-------~~~I~~id~~~g~~~~~~~~~--~~~~-ia~~~~g~~l~~~d~~~-----~~~I~~~ 199 (409)
T 3hrp_A 135 GIAAVGNNTVLAYQRD-------DPRVRLISVDDNKVTTVHPGF--KGGK-PAVTKDKQRVYSIGWEG-----THTVYVY 199 (409)
T ss_dssp EEEECSTTEEEEEETT-------TTEEEEEETTTTEEEEEEETC--CBCB-CEECTTSSEEEEEBSST-----TCEEEEE
T ss_pred EEEEeCCCCEEEEecC-------CCcEEEEECCCCEEEEeeccC--CCCc-eeEecCCCcEEEEecCC-----CceEEEE
Confidence 3444357889998753 347999999988765543221 1122 232 245677775431 1278899
Q ss_pred cCCCCc-EEEcCCCCC--CCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccc---cccCCCc---ee
Q 040145 228 DPVKGN-WRTIASMGT--NMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV---GLREGWT---GS 296 (402)
Q Consensus 228 d~~t~~-W~~~~~~~~--~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~---~~~~~~~---~~ 296 (402)
|+.++. ...+..... ...-+..++. ++.||+... ...+++||+.+.....+.. ....... +.
T Consensus 200 d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~-------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~i 272 (409)
T 3hrp_A 200 MKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS-------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYL 272 (409)
T ss_dssp EGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT-------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEE
T ss_pred EcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC-------CCcEEEEECCCCCEEEEecccccCCCCCCccccE
Confidence 987653 233311111 1112223333 688999432 2379999998876544411 0111112 22
Q ss_pred EEEE-CCEEEEEeccCCcEEEEEeCCCCceeecCCCC-CC---------ccccCCeEEEE-eCCEEEEEec-CceeeeEE
Q 040145 297 SVVV-YEHLFVVSELERMKLKVYDPSTDSWETIEGPP-LP---------EQICKPFAVNA-CDCRVYVVGR-NLHVAVGH 363 (402)
Q Consensus 297 ~~~~-~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~-~p---------~~~~~~~~~~~-~~~~i~v~GG-~~~~~~~~ 363 (402)
++.- ++.||+.... ...|++||++.. ...+.+.. .+ .......++++ .+|.|||.-. .++.
T Consensus 273 a~~p~~g~lyv~d~~-~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~---- 346 (409)
T 3hrp_A 273 IYYFVDSNFYMSDQN-LSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYC---- 346 (409)
T ss_dssp EEETTTTEEEEEETT-TTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCE----
T ss_pred EEeCCCCEEEEEeCC-CCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCE----
Confidence 2232 5889987543 668999998765 23322111 00 00123345554 3678999875 4443
Q ss_pred EEecc
Q 040145 364 ITRLS 368 (402)
Q Consensus 364 v~~~~ 368 (402)
|..++
T Consensus 347 I~~~~ 351 (409)
T 3hrp_A 347 LRKLD 351 (409)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66666
No 198
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=95.29 E-value=0.25 Score=43.86 Aligned_cols=155 Identities=12% Similarity=0.014 Sum_probs=78.9
Q ss_pred cCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CC-EEEEEcCCCCCCCCCCeeEEEcCCCC
Q 040145 155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GG-MIYVAGGSSADLFELDSAEVLDPVKG 232 (402)
Q Consensus 155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~t~ 232 (402)
.++.+|+.++. ...++++|+.+++....-+.+.......++.. ++ .+|+.+.. ...+.+||+.++
T Consensus 9 ~~~~~~v~~~~-------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~------~~~i~~~d~~t~ 75 (349)
T 1jmx_B 9 AGHEYMIVTNY-------PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH------YGDIYGIDLDTC 75 (349)
T ss_dssp TTCEEEEEEET-------TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETT------TTEEEEEETTTT
T ss_pred CCCEEEEEeCC-------CCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCC------CCcEEEEeCCCC
Confidence 37788888765 34899999999865432222211122334433 33 57777643 457999999988
Q ss_pred cEEEcCCCCC-----CCcceeEEEE-CCE-EEEEcccc--cCC---ccCCcEEEEeCCCCCeeec-cc-cccCCCceeEE
Q 040145 233 NWRTIASMGT-----NMASYDAAVL-DGK-LLVTEGWL--WPF---FVSPRGQVYDPSTDNWESM-AV-GLREGWTGSSV 298 (402)
Q Consensus 233 ~W~~~~~~~~-----~~~~~~~~~~-~g~-ly~~gG~~--~~~---~~~~~~~~yd~~~~~W~~~-~~-~~~~~~~~~~~ 298 (402)
+-...-..+. ...-...+.. +|+ +|+.+... ... .....+.+||+.+++-... .. ..+........
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 155 (349)
T 1jmx_B 76 KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRA 155 (349)
T ss_dssp EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEE
T ss_pred cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeE
Confidence 6543222211 0111222332 554 45443210 000 0024789999987542221 11 11111111122
Q ss_pred EECCEEEEEeccCCcEEEEEeCCCCcee
Q 040145 299 VVYEHLFVVSELERMKLKVYDPSTDSWE 326 (402)
Q Consensus 299 ~~~~~l~~~gg~~~~~~~~yd~~~~~W~ 326 (402)
.-+|++|+. +. .+++||+.+.+-.
T Consensus 156 s~dg~l~~~-~~---~i~~~d~~~~~~~ 179 (349)
T 1jmx_B 156 ADDGSLYVA-GP---DIYKMDVKTGKYT 179 (349)
T ss_dssp CTTSCEEEE-SS---SEEEECTTTCCEE
T ss_pred CCCCcEEEc-cC---cEEEEeCCCCcee
Confidence 336777764 32 4999999876544
No 199
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=95.29 E-value=2.6 Score=41.83 Aligned_cols=113 Identities=20% Similarity=0.322 Sum_probs=69.8
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCc--eeecCCCccc--------ccceEEEEECCEEEEEcCCCCCCCCCCeeE
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVMNKMITA--------RSFFASGVIGGMIYVAGGSSADLFELDSAE 225 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 225 (402)
++.||+.... ..++.+|..|++ |+.-...+.. ....+.++.+++||+... ...+.
T Consensus 70 ~g~vyv~~~~--------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-------dg~l~ 134 (689)
T 1yiq_A 70 DGVMYTTGPF--------SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-------DGRLE 134 (689)
T ss_dssp TTEEEEECGG--------GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TSEEE
T ss_pred CCEEEEEcCC--------CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-------CCEEE
Confidence 8999997642 369999999985 8874433211 012234567889888653 35689
Q ss_pred EEcCCCCc--EEEcCC-CCCC--CcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCC--eee
Q 040145 226 VLDPVKGN--WRTIAS-MGTN--MASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WES 284 (402)
Q Consensus 226 ~yd~~t~~--W~~~~~-~~~~--~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~ 284 (402)
.+|..|++ |+.-.. -+.. ....+.++.++.+|+-.+... ......++.||..+++ |+.
T Consensus 135 AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 135 AIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAE-FGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp EEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEE
T ss_pred EEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCc-cCCCCEEEEEECCCCcEEEEe
Confidence 99998875 876432 1111 112233566899887433211 1123479999998875 875
No 200
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=95.25 E-value=1.3 Score=38.30 Aligned_cols=182 Identities=10% Similarity=0.045 Sum_probs=88.3
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF 199 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~ 199 (402)
.+.++|..+++....-...... ..-.++....++..++.|+.+ ..+.+||..+++-... +.......
T Consensus 46 tV~iWd~~tg~~~~~~~~~~~~----~~V~~v~~~~~~~~l~sgs~D-------g~v~iw~~~~~~~~~~--~~~h~~~~ 112 (318)
T 4ggc_A 46 SVYLWSASSGDILQLLQMEQPG----EYISSVAWIKEGNYLAVGTSS-------AEVQLWDVQQQKRLRN--MTSHSARV 112 (318)
T ss_dssp EEEEEETTTCCEEEEEECCSTT----CCEEEEEECTTSSEEEEEETT-------SEEEEEETTTTEEEEE--EECCSSCE
T ss_pred EEEEEECCCCCEEEEEEecCCC----CeEEEEEECCCCCEEEEEECC-------CcEEEeecCCceeEEE--ecCccceE
Confidence 4888999988765432222111 223445555577888888763 2789999988763322 11111222
Q ss_pred EEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeE--EEECCEEEEEcccccCCccCCcEEEEeC
Q 040145 200 ASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDA--AVLDGKLLVTEGWLWPFFVSPRGQVYDP 277 (402)
Q Consensus 200 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~--~~~~g~ly~~gG~~~~~~~~~~~~~yd~ 277 (402)
.....++.+.+.|+. ...+..++..+...... .+......... ...++..++.|+.+ ..+.+||.
T Consensus 113 ~~~~~~~~~l~s~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~d------~~i~iwd~ 179 (318)
T 4ggc_A 113 GSLSWNSYILSSGSR------SGHIHHHDVRVAEHHVA-TLSGHSQEVCGLRWAPDGRHLASGGND------NLVNVWPS 179 (318)
T ss_dssp EEEEEETTEEEEEET------TSEEEEEETTSSSCEEE-EEECCSSCEEEEEECTTSSEEEEEETT------SCEEEEES
T ss_pred EEeecCCCEEEEEec------CCceEeeecCCCceeEE-EEcCccCceEEEEEcCCCCEEEEEecC------cceeEEEC
Confidence 233344555566654 33445555544332211 11111111111 12256666666543 36888998
Q ss_pred CCCCeee--ccccccC-CCceeEEEE--CCE-EEEEeccCCcEEEEEeCCCCceee
Q 040145 278 STDNWES--MAVGLRE-GWTGSSVVV--YEH-LFVVSELERMKLKVYDPSTDSWET 327 (402)
Q Consensus 278 ~~~~W~~--~~~~~~~-~~~~~~~~~--~~~-l~~~gg~~~~~~~~yd~~~~~W~~ 327 (402)
.+++-.. ....... ......+.. ++. +++.+|.....+.++|.....-..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~ 235 (318)
T 4ggc_A 180 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 235 (318)
T ss_dssp SCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE
T ss_pred CCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc
Confidence 7654221 1110111 111111111 333 444455556678889987765443
No 201
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.25 E-value=2.4 Score=41.08 Aligned_cols=116 Identities=20% Similarity=0.305 Sum_probs=70.9
Q ss_pred EEEEECCEEEEEcCCCCCCCCCCeeEEEcC-CCCc--EEEcCCCCCC--------CcceeEEEECCEEEEEcccccCCcc
Q 040145 200 ASGVIGGMIYVAGGSSADLFELDSAEVLDP-VKGN--WRTIASMGTN--------MASYDAAVLDGKLLVTEGWLWPFFV 268 (402)
Q Consensus 200 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~-~t~~--W~~~~~~~~~--------~~~~~~~~~~g~ly~~gG~~~~~~~ 268 (402)
+.++.++.||+.... ...++.+|. .|++ |+.-...... ......++.+++||+....
T Consensus 57 ~P~v~~g~vyv~~~~------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d------ 124 (571)
T 2ad6_A 57 APLVIGDMMYVHSAF------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQAN------ 124 (571)
T ss_dssp CCEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTT------
T ss_pred ccEEECCEEEEEeCC------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCC------
Confidence 345679999998752 246899999 7765 9875332211 0112345678999886532
Q ss_pred CCcEEEEeCCCC--CeeeccccccC--CCceeEEEECCEEEEEeccC----CcEEEEEeCCCC--ceeec
Q 040145 269 SPRGQVYDPSTD--NWESMAVGLRE--GWTGSSVVVYEHLFVVSELE----RMKLKVYDPSTD--SWETI 328 (402)
Q Consensus 269 ~~~~~~yd~~~~--~W~~~~~~~~~--~~~~~~~~~~~~l~~~gg~~----~~~~~~yd~~~~--~W~~~ 328 (402)
..++++|.+++ .|+.-...... ......++.++.+|+..+.. ...++.||.++. .|+.-
T Consensus 125 -g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 125 -GHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp -SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred -CEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 36899999877 48753221111 11222256788887753311 358999999875 48653
No 202
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=95.20 E-value=1.9 Score=39.65 Aligned_cols=203 Identities=11% Similarity=0.112 Sum_probs=111.1
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCc----eee-cCCCcc
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNR----WTV-MNKMIT 194 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~----W~~-~~~~~~ 194 (402)
.+..+|+....+..+.... ....+.+....++.||+.--. ...++++++.... ... +...
T Consensus 93 ~I~~i~l~~~~~~~~~~~~------~~~~~l~~d~~~~~lywsD~~-------~~~I~~~~~~g~~~~~~~~~~~~~~-- 157 (400)
T 3p5b_L 93 EVRKMTLDRSEYTSLIPNL------RNVVALDTEVASNRIYWSDLS-------QRMICSTQLDRAHGVSSYDTVISRD-- 157 (400)
T ss_dssp EEEEECTTSCSCEEEECSC------SCEEEEEEETTTTEEEEEETT-------TTEEEEEEC------CCCEEEECSS--
T ss_pred eeEEEccCCcceeEecccc------CcceEEeeeeccCceEEEecC-------CCeEEEEEcccCCCCCcceEEEeCC--
Confidence 4677888777665543211 122344444347899987543 3478889886521 222 2211
Q ss_pred cccceEEEE--ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcC--CCCCCCcceeEEE--ECCEEEEEcccccCCcc
Q 040145 195 ARSFFASGV--IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIA--SMGTNMASYDAAV--LDGKLLVTEGWLWPFFV 268 (402)
Q Consensus 195 ~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~~~~~~~~~--~~g~ly~~gG~~~~~~~ 268 (402)
.....++++ .++.||+.-.. ...++++|+....-+.+. .+..| .+.++ .+|.||+.-...
T Consensus 158 ~~~p~glavD~~~~~lY~~d~~------~~~I~~~~~~g~~~~~l~~~~~~~P---~~iavdp~~g~ly~td~~~----- 223 (400)
T 3p5b_L 158 IQAPDGLAVDWIHSNIYWTDSV------LGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWGT----- 223 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETT------TTEEEEECTTTCSEEEEEECSSCCE---EEEEEETTTTEEEEEECSS-----
T ss_pred CCCcccEEEEecCCceEEEECC------CCeEEEEeCCCCceEEEEeCCCCCc---ceEEEecccCeEEEEeCCC-----
Confidence 112234444 37899998654 567899999876554442 22222 12333 268899875211
Q ss_pred CCcEEEEeCCCCCeeeccccccCCC-ceeEEE-ECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEe
Q 040145 269 SPRGQVYDPSTDNWESMAVGLREGW-TGSSVV-VYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNAC 346 (402)
Q Consensus 269 ~~~~~~yd~~~~~W~~~~~~~~~~~-~~~~~~-~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~ 346 (402)
...++++++....=..+.. ....+ .+.++- .+++||+.... ...|+++|.+...-..+.. .+......+++++.
T Consensus 224 ~~~I~~~~~dG~~~~~~~~-~~l~~P~glavd~~~~~lY~aD~~-~~~I~~~d~dG~~~~~~~~--~~~~l~~P~gl~v~ 299 (400)
T 3p5b_L 224 PAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGRLYWVDSK-LHSISSIDVNGGNRKTILE--DEKRLAHPFSLAVF 299 (400)
T ss_dssp SCCEEEEETTSCSCEEEEC-SSCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTSCCCEEEEE--CSSTTSSEEEEEEE
T ss_pred CCEEEEEeCCCCccEEEEE-CCCCceEEEEEEeCCCEEEEEECC-CCEEEEEeCCCCccEEEEe--CCCCCCCCEEEEEe
Confidence 2478999886543332211 01111 112222 36889998543 6789999997654333321 11122455688889
Q ss_pred CCEEEEEec
Q 040145 347 DCRVYVVGR 355 (402)
Q Consensus 347 ~~~i~v~GG 355 (402)
++.||+.--
T Consensus 300 ~~~lywtd~ 308 (400)
T 3p5b_L 300 EDKVFWTDI 308 (400)
T ss_dssp TTEEEEEES
T ss_pred CCEEEEecC
Confidence 999999874
No 203
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=95.05 E-value=1.4 Score=38.89 Aligned_cols=200 Identities=11% Similarity=0.002 Sum_probs=101.3
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEcc-CCEEEEEeCccCCC----------CCC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPR-EGTLFVCGGMVSDV----------DCP 172 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~-~~~i~v~GG~~~~~----------~~~ 172 (402)
++.||+.... ..+..||+.++..+.+....... .......+++.. ++.||+........ ...
T Consensus 91 ~g~l~v~d~~-----~~i~~~d~~~g~~~~~~~~~~~~--~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~ 163 (322)
T 2fp8_A 91 NNQLYIVDCY-----YHLSVVGSEGGHATQLATSVDGV--PFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDK 163 (322)
T ss_dssp TTEEEEEETT-----TEEEEECTTCEECEEEESEETTE--ECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCC
T ss_pred CCcEEEEECC-----CCEEEEeCCCCEEEEecccCCCC--cccccceEEEecCCCEEEEECCcccccccccceehcccCC
Confidence 5678877421 12678888866554443221110 001223345545 67899874321000 012
Q ss_pred CceEEEEECCCCceeecCCCcccccceEEEEE-C-CEEEEEcCCCCCCCCCCeeEEEcCCC---CcEEEcCCCCCCCcce
Q 040145 173 LDLVLKYEMQKNRWTVMNKMITARSFFASGVI-G-GMIYVAGGSSADLFELDSAEVLDPVK---GNWRTIASMGTNMASY 247 (402)
Q Consensus 173 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~t---~~W~~~~~~~~~~~~~ 247 (402)
...+++||+.+++.+.+.. ......+++.. + +.||+.-.. ...+.+||..+ ...+....++. .
T Consensus 164 ~g~v~~~d~~~~~~~~~~~--~~~~p~gia~~~dg~~lyv~d~~------~~~I~~~~~~~~~~~~~~~~~~~~g----P 231 (322)
T 2fp8_A 164 TGRLIKYDPSTKETTLLLK--ELHVPGGAEVSADSSFVLVAEFL------SHQIVKYWLEGPKKGTAEVLVKIPN----P 231 (322)
T ss_dssp CEEEEEEETTTTEEEEEEE--EESCCCEEEECTTSSEEEEEEGG------GTEEEEEESSSTTTTCEEEEEECSS----E
T ss_pred CceEEEEeCCCCEEEEecc--CCccCcceEECCCCCEEEEEeCC------CCeEEEEECCCCcCCccceEEeCCC----C
Confidence 3579999998887654321 01112233433 3 358887432 46788998875 23443333322 3
Q ss_pred eEEEE--CCEEEEEcccccCC----ccCCcEEEEeCCCCCeeecccccc--CCCceeEEEECCEEEEEeccCCcEEEEEe
Q 040145 248 DAAVL--DGKLLVTEGWLWPF----FVSPRGQVYDPSTDNWESMAVGLR--EGWTGSSVVVYEHLFVVSELERMKLKVYD 319 (402)
Q Consensus 248 ~~~~~--~g~ly~~gG~~~~~----~~~~~~~~yd~~~~~W~~~~~~~~--~~~~~~~~~~~~~l~~~gg~~~~~~~~yd 319 (402)
....+ +|.||+........ .....+.+||+....-..+..+-. ......++.-+++||+.. ...+.|.+|+
T Consensus 232 ~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~-~~~~~i~~~~ 310 (322)
T 2fp8_A 232 GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGT-LFHGSVGILV 310 (322)
T ss_dssp EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEEC-SSCSEEEEEE
T ss_pred CCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEee-cCCCceEEEe
Confidence 33333 57888875321000 001368899986544444432111 112222345688999764 3467899998
Q ss_pred CCCC
Q 040145 320 PSTD 323 (402)
Q Consensus 320 ~~~~ 323 (402)
++.+
T Consensus 311 ~~~~ 314 (322)
T 2fp8_A 311 YDKK 314 (322)
T ss_dssp C---
T ss_pred cccc
Confidence 8654
No 204
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=95.02 E-value=3.1 Score=41.27 Aligned_cols=119 Identities=15% Similarity=0.163 Sum_probs=67.4
Q ss_pred CCCeEEEEEEeCCCCceeEEEeecCCCc--EEeCCCCCCCCC---CC-CCCceEEEEccCCEEEEEeCccCCCCCCCceE
Q 040145 103 KDPWLFVFAFHKCTGKIQWQVLDLTHYC--WHTIPAMPCKDK---VC-PHGFRCVSIPREGTLFVCGGMVSDVDCPLDLV 176 (402)
Q Consensus 103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~--W~~l~~~~~~~~---~~-~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~ 176 (402)
.++.+|+... ...++++|..+.+ |+.-...+.... .+ ....+.++. ++.||+... ...+
T Consensus 69 ~~g~vyv~~~-----~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~v~v~~~--------dg~l 133 (689)
T 1yiq_A 69 VDGVMYTTGP-----FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVW--KGKVYVGVL--------DGRL 133 (689)
T ss_dssp ETTEEEEECG-----GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECT--------TSEE
T ss_pred ECCEEEEEcC-----CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEE--CCEEEEEcc--------CCEE
Confidence 4777887642 2348899998776 875433221000 00 011122333 788887542 2379
Q ss_pred EEEECCCCc--eeecCC-Ccc--cccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEc
Q 040145 177 LKYEMQKNR--WTVMNK-MIT--ARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTI 237 (402)
Q Consensus 177 ~~~d~~t~~--W~~~~~-~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~ 237 (402)
+.+|..|++ |+.-.. -+. .....+.++.++.+|+..+...... ...+..||..|++ |+.-
T Consensus 134 ~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~-~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 134 EAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGV-RGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp EEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCC-BCEEEEEETTTCCEEEEEE
T ss_pred EEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCC-CCEEEEEECCCCcEEEEec
Confidence 999999985 876432 111 1122234567888887543222112 5679999999886 8753
No 205
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=95.02 E-value=1.4 Score=42.72 Aligned_cols=144 Identities=10% Similarity=0.111 Sum_probs=73.1
Q ss_pred CCeeEEEcCCCCcEEEcCCCCCCCcceeEEE-ECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccc---cccCCCcee
Q 040145 221 LDSAEVLDPVKGNWRTIASMGTNMASYDAAV-LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV---GLREGWTGS 296 (402)
Q Consensus 221 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~---~~~~~~~~~ 296 (402)
...+.+.|..+.....+..++..+.-+.... -+|+.+++.... .+.+.++|.++++-...-+ ..|.+..+.
T Consensus 319 ~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~-----sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~ 393 (567)
T 1qks_A 319 TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA-----RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGA 393 (567)
T ss_dssp TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG-----GTEEEEEETTTTEEEEEEECSSSSBCCTTCE
T ss_pred CCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCC-----CCeEEEEECCCCcEEEEEeccCcCCCCccce
Confidence 4567888887765444444444444444433 256644443321 3579999999876332211 122222232
Q ss_pred EEEE--CCEEEEEeccCCcEEEEEeCCCC-----ceeecCCCCCCccccCCeEEEEeC-CEEEEEe--cCceeeeEEEEe
Q 040145 297 SVVV--YEHLFVVSELERMKLKVYDPSTD-----SWETIEGPPLPEQICKPFAVNACD-CRVYVVG--RNLHVAVGHITR 366 (402)
Q Consensus 297 ~~~~--~~~l~~~gg~~~~~~~~yd~~~~-----~W~~~~~~~~p~~~~~~~~~~~~~-~~i~v~G--G~~~~~~~~v~~ 366 (402)
.... .+.+|+.+-.....|.++|.++. .|+.+..++.... ...+.....+ ..+||-- +.+....+.|.+
T Consensus 394 ~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~-g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v 472 (567)
T 1qks_A 394 NFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG-GSLFIKTHPNSQYLYVDATLNPEAEISGSVAV 472 (567)
T ss_dssp EEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS-CCCCEECCTTCSEEEEECTTCSSHHHHTCEEE
T ss_pred eeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC-CCEEEEeCCCCCeEEEecCCCCCcccCceEEE
Confidence 2233 36677765444467889988763 3988774433311 1111222233 4677744 222112344666
Q ss_pred cccc
Q 040145 367 LSTS 370 (402)
Q Consensus 367 ~~~~ 370 (402)
||..
T Consensus 473 ~d~~ 476 (567)
T 1qks_A 473 FDIK 476 (567)
T ss_dssp EEGG
T ss_pred EECC
Confidence 6643
No 206
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=94.93 E-value=1.9 Score=38.27 Aligned_cols=151 Identities=11% Similarity=0.091 Sum_probs=77.1
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcE
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNW 234 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 234 (402)
++.+++.|+.+ ..+.+||..+++-.............+++.. ++.+++.|+. ...+.+||..+..-
T Consensus 138 ~~~~l~s~s~d-------g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~------dg~i~iwd~~~~~~ 204 (343)
T 3lrv_A 138 NTEYFIWADNR-------GTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSP------DGILDVYNLSSPDQ 204 (343)
T ss_dssp -CCEEEEEETT-------CCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECT------TSCEEEEESSCTTS
T ss_pred CCCEEEEEeCC-------CcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcC------CCEEEEEECCCCCC
Confidence 56677777753 2689999988765332221222122233333 5677777775 45688999987753
Q ss_pred EEcCCCCC-CCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCe-eeccccc-cCCCce-eEEEE--CCEEEE
Q 040145 235 RTIASMGT-NMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNW-ESMAVGL-REGWTG-SSVVV--YEHLFV 306 (402)
Q Consensus 235 ~~~~~~~~-~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W-~~~~~~~-~~~~~~-~~~~~--~~~l~~ 306 (402)
.. ..+.. .......+.+ ++..++.|+. ..+..||+.+.+- ..+.... ...... .++.+ +++.++
T Consensus 205 ~~-~~~~~~h~~~v~~l~fs~~g~~l~s~~~-------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 276 (343)
T 3lrv_A 205 AS-SRFPVDEEAKIKEVKFADNGYWMVVECD-------QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMI 276 (343)
T ss_dssp CC-EECCCCTTSCEEEEEECTTSSEEEEEES-------SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEE
T ss_pred Cc-cEEeccCCCCEEEEEEeCCCCEEEEEeC-------CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEE
Confidence 20 11122 1122223333 6666666662 2689999987542 1121100 001111 12333 566666
Q ss_pred EeccCCcEEEEE--eCCCCceee
Q 040145 307 VSELERMKLKVY--DPSTDSWET 327 (402)
Q Consensus 307 ~gg~~~~~~~~y--d~~~~~W~~ 327 (402)
.|+.+...+.+| +...+.|..
T Consensus 277 ~~s~~d~~i~v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 277 AYSNESNSLTIYKFDKKTKNWTK 299 (343)
T ss_dssp EEETTTTEEEEEEECTTTCSEEE
T ss_pred EecCCCCcEEEEEEcccccceEe
Confidence 644323345555 446678987
No 207
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=94.91 E-value=1.8 Score=37.82 Aligned_cols=189 Identities=12% Similarity=0.092 Sum_probs=92.4
Q ss_pred eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCC--ceeecCCCcccccc-eEEEEE---CCEEEEEcCCCCCCCCCC
Q 040145 149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKN--RWTVMNKMITARSF-FASGVI---GGMIYVAGGSSADLFELD 222 (402)
Q Consensus 149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~--~W~~~~~~~~~r~~-~~~~~~---~~~iyv~GG~~~~~~~~~ 222 (402)
.++.+..++.+++.|+.+ ..+.+||..++ .++.+..+...... .++... ++.+++.|+. ..
T Consensus 15 ~~~~~~~~~~~l~~~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~------dg 81 (351)
T 3f3f_A 15 HDVVYDFYGRHVATCSSD-------QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASY------DK 81 (351)
T ss_dssp EEEEECSSSSEEEEEETT-------SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEET------TS
T ss_pred eEEEEcCCCCEEEEeeCC-------CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcC------CC
Confidence 334443466677777652 26888888754 34443333222222 233333 2667777775 34
Q ss_pred eeEEEcCCCC-------cEEEcCCCCCCCcceeEEEE--C--CEEEEEcccccCCccCCcEEEEeCCCCC----eeeccc
Q 040145 223 SAEVLDPVKG-------NWRTIASMGTNMASYDAAVL--D--GKLLVTEGWLWPFFVSPRGQVYDPSTDN----WESMAV 287 (402)
Q Consensus 223 ~~~~yd~~t~-------~W~~~~~~~~~~~~~~~~~~--~--g~ly~~gG~~~~~~~~~~~~~yd~~~~~----W~~~~~ 287 (402)
.+.+||..+. .|..+..+.........+.+ + +.+++.|+.+ ..+..||+.+.+ |..-..
T Consensus 82 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~~ 155 (351)
T 3f3f_A 82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND------GILRLYDALEPSDLRSWTLTSE 155 (351)
T ss_dssp CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT------CEEEEEECSSTTCTTCCEEEEE
T ss_pred eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC------CcEEEecCCChHHhcccccccc
Confidence 5778887664 23443333322222333333 3 6667776643 368899987654 221110
Q ss_pred -----cccCCCc-e-eEEEE-----CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE-eCC----EE
Q 040145 288 -----GLREGWT-G-SSVVV-----YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA-CDC----RV 350 (402)
Q Consensus 288 -----~~~~~~~-~-~~~~~-----~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~----~i 350 (402)
..+.... . .++.. ++.++++|+.+ ..+..++........+.. +......-.++.. .++ .+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~--~~~h~~~i~~~~~~p~~~~~~~~ 232 (351)
T 3f3f_A 156 MKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALE-QAIIYQRGKDGKLHVAAK--LPGHKSLIRSISWAPSIGRWYQL 232 (351)
T ss_dssp EESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETT-EEEEEEECTTSCEEEEEE--CCCCCSCEEEEEECCCSSCSSEE
T ss_pred ccccccccCCcccceeEEEeccCCCCCcEEEEecCC-CcEEEEccCCCceeeeee--cCCCCcceeEEEECCCCCCcceE
Confidence 0011111 1 11222 36777777764 345556666666544432 2211112223333 343 78
Q ss_pred EEEecCcee
Q 040145 351 YVVGRNLHV 359 (402)
Q Consensus 351 ~v~GG~~~~ 359 (402)
++.|+.+..
T Consensus 233 l~s~~~dg~ 241 (351)
T 3f3f_A 233 IATGCKDGR 241 (351)
T ss_dssp EEEEETTSC
T ss_pred EEEEcCCCe
Confidence 888876544
No 208
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=94.87 E-value=0.012 Score=57.62 Aligned_cols=36 Identities=17% Similarity=0.381 Sum_probs=29.2
Q ss_pred CCCCCCcHHHHHHhhccCc-cchhhhhhhccHhHHHh
Q 040145 51 PFIPGLPDDVALNCLLRLP-VESHAACRAVCKRWHLL 86 (402)
Q Consensus 51 ~~~~~Lp~dl~~~il~rlp-~~~l~~~~~v~k~W~~l 86 (402)
..|+.||+|++.+||.+|| .++..++..|||+|+.+
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 4688999999999999999 99999999999999988
No 209
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=94.85 E-value=2.4 Score=39.22 Aligned_cols=156 Identities=8% Similarity=0.042 Sum_probs=78.3
Q ss_pred eEEEEccCCE-EEEEeCccCCCCCCCceEEEEECC--CCceee-cCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCe
Q 040145 149 RCVSIPREGT-LFVCGGMVSDVDCPLDLVLKYEMQ--KNRWTV-MNKMITARSFFASGVI-GGMIYVAGGSSADLFELDS 223 (402)
Q Consensus 149 ~~~~~~~~~~-i~v~GG~~~~~~~~~~~~~~~d~~--t~~W~~-~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~ 223 (402)
.++++..++. |++.|+.+ ..+.+||.. ++.... +.....+....+++.. +++.+++|+. ...
T Consensus 106 ~~~~~s~d~~~l~~~~~~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------~g~ 172 (450)
T 2vdu_B 106 RNLRLTSDESRLIACADSD-------KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK------FGD 172 (450)
T ss_dssp EEEEECTTSSEEEEEEGGG-------TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEET------TSE
T ss_pred EEEEEcCCCCEEEEEECCC-------CeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeC------CCc
Confidence 3344434554 46777652 368889987 543222 1110111111223332 4555666654 355
Q ss_pred eEEEcCCCCcEEE--cCCCCCCCcceeEE--EEC---CEEEEEcccccCCccCCcEEEEeCCCCCeeec-cccccCCCce
Q 040145 224 AEVLDPVKGNWRT--IASMGTNMASYDAA--VLD---GKLLVTEGWLWPFFVSPRGQVYDPSTDNWESM-AVGLREGWTG 295 (402)
Q Consensus 224 ~~~yd~~t~~W~~--~~~~~~~~~~~~~~--~~~---g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~-~~~~~~~~~~ 295 (402)
+++||..+..... +..+.........+ .-+ +++++.|+.+ ..+.+||+.+++-... .......-..
T Consensus 173 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~h~~~v~~ 246 (450)
T 2vdu_B 173 VYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD------EHIKISHYPQCFIVDKWLFGHKHFVSS 246 (450)
T ss_dssp EEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETT------SCEEEEEESCTTCEEEECCCCSSCEEE
T ss_pred EEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCC------CcEEEEECCCCceeeeeecCCCCceEE
Confidence 7888876654321 11111111112222 236 7777777753 3688999877653321 1111111111
Q ss_pred eEEEECCEEEEEeccCCcEEEEEeCCCCce
Q 040145 296 SSVVVYEHLFVVSELERMKLKVYDPSTDSW 325 (402)
Q Consensus 296 ~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W 325 (402)
.... ++.+++.|+. ...+.+||..+.+.
T Consensus 247 ~~~s-d~~~l~s~~~-d~~v~vwd~~~~~~ 274 (450)
T 2vdu_B 247 ICCG-KDYLLLSAGG-DDKIFAWDWKTGKN 274 (450)
T ss_dssp EEEC-STTEEEEEES-SSEEEEEETTTCCE
T ss_pred EEEC-CCCEEEEEeC-CCeEEEEECCCCcE
Confidence 1223 7777777775 56899999987653
No 210
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=94.79 E-value=1.5 Score=41.94 Aligned_cols=180 Identities=7% Similarity=0.042 Sum_probs=86.5
Q ss_pred eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEE
Q 040145 149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVL 227 (402)
Q Consensus 149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~y 227 (402)
.++++..++..++.|+.+ ..+.+||.....-..+... ...-.+++.. +++.++.++. -..+.+|
T Consensus 389 ~~~~~s~dg~~l~~~~~d-------~~v~~~~~~~~~~~~~~~~--~~~v~~~~~s~d~~~l~~~~~------d~~v~~w 453 (577)
T 2ymu_A 389 RGVAFSPDGQTIASASDD-------KTVKLWNRNGQLLQTLTGH--SSSVWGVAFSPDDQTIASASD------DKTVKLW 453 (577)
T ss_dssp EEEEECTTSSCEEEEETT-------SEEEEECTTCCEEEEEECC--SSCEEEEEECTTSSEEEEEET------TSEEEEE
T ss_pred EEEEECCCCCEEEEEeCC-------CEEEEEeCCCCEEEEecCC--CCCeEEEEECCCCCEEEEEcC------CCEEEEE
Confidence 444554567777777652 2688888543322222111 1111122222 4566666654 3467888
Q ss_pred cCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEE-EECCEE
Q 040145 228 DPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSV-VVYEHL 304 (402)
Q Consensus 228 d~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~-~~~~~l 304 (402)
|.....-..+.... .....+.+ ++++++.++.+ ..+..||.....-..+.. .. ......+ .-++++
T Consensus 454 ~~~~~~~~~~~~~~---~~v~~~~~spd~~~las~~~d------~~i~iw~~~~~~~~~~~~-h~-~~v~~l~~s~dg~~ 522 (577)
T 2ymu_A 454 NRNGQLLQTLTGHS---SSVRGVAFSPDGQTIASASDD------KTVKLWNRNGQLLQTLTG-HS-SSVRGVAFSPDGQT 522 (577)
T ss_dssp ETTSCEEEEEECCS---SCEEEEEECTTSCEEEEEETT------SEEEEEETTSCEEEEEEC-CS-SCEEEEEECTTSSC
T ss_pred ECCCCEEEEEcCCC---CCEEEEEEcCCCCEEEEEeCC------CEEEEEcCCCCEEEEEeC-CC-CCEEEEEEcCCCCE
Confidence 87554443332211 11222222 67777777643 367888854332222211 11 1111111 226777
Q ss_pred EEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCcee
Q 040145 305 FVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHV 359 (402)
Q Consensus 305 ~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~ 359 (402)
++.|+. ...+.+||.....-..+.+ -. ..........+++.++.||.+..
T Consensus 523 l~s~~~-dg~v~lwd~~~~~~~~~~~--h~--~~v~~~~fs~dg~~l~s~~~D~~ 572 (577)
T 2ymu_A 523 IASASD-DKTVKLWNRNGQLLQTLTG--HS--SSVWGVAFSPDGQTIASASSDKT 572 (577)
T ss_dssp EEEEET-TSEEEEECTTSCEEEEEEC--CS--SCEEEEEECTTSSCEEEEETTSC
T ss_pred EEEEEC-cCEEEEEeCCCCEEEEEcC--CC--CCEEEEEEcCCCCEEEEEeCCCE
Confidence 776665 4578899975443333321 01 01111223457787777876544
No 211
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=94.78 E-value=1.9 Score=37.60 Aligned_cols=199 Identities=14% Similarity=0.080 Sum_probs=98.0
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcE
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNW 234 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 234 (402)
++.||+.+-. .+.+++|++ ++..+.... +. ....+.+. -++++|+.... ...+.+||+. ++.
T Consensus 56 g~~l~~~d~~-------~~~i~~~~~-~g~~~~~~~-~~-~~~~gl~~d~dG~l~v~~~~------~~~v~~~~~~-g~~ 118 (305)
T 3dr2_A 56 QRTLVWSDLV-------GRRVLGWRE-DGTVDVLLD-AT-AFTNGNAVDAQQRLVHCEHG------RRAITRSDAD-GQA 118 (305)
T ss_dssp GTEEEEEETT-------TTEEEEEET-TSCEEEEEE-SC-SCEEEEEECTTSCEEEEETT------TTEEEEECTT-SCE
T ss_pred CCEEEEEECC-------CCEEEEEeC-CCCEEEEeC-CC-CccceeeECCCCCEEEEECC------CCEEEEECCC-CCE
Confidence 4457777543 336888988 454433221 11 11122222 25778876432 3568889986 666
Q ss_pred EEcCCCCCC-C-cce-eEEE-ECCEEEEE----ccccc-------CCccCCcEEEEeCCCCCeeeccccccCCCceeEEE
Q 040145 235 RTIASMGTN-M-ASY-DAAV-LDGKLLVT----EGWLW-------PFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVV 299 (402)
Q Consensus 235 ~~~~~~~~~-~-~~~-~~~~-~~g~ly~~----gG~~~-------~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~ 299 (402)
+.+...... + ... ..++ -+|.||+. |.... .......+++||+.+++.+.+. ....+ .+.+..
T Consensus 119 ~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p-~gl~~s 196 (305)
T 3dr2_A 119 HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHP-NGLAFS 196 (305)
T ss_dssp EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSE-EEEEEC
T ss_pred EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCC-cceEEc
Confidence 655321111 1 111 1222 27889986 32110 0011246899999888877664 22111 111122
Q ss_pred ECCE-EEEEeccC----CcEEEEEeCCCCceeecCCC-CCCccccCCeEEE-EeCCEEEEEecCceeeeEEEEecccccc
Q 040145 300 VYEH-LFVVSELE----RMKLKVYDPSTDSWETIEGP-PLPEQICKPFAVN-ACDCRVYVVGRNLHVAVGHITRLSTSEK 372 (402)
Q Consensus 300 ~~~~-l~~~gg~~----~~~~~~yd~~~~~W~~~~~~-~~p~~~~~~~~~~-~~~~~i~v~GG~~~~~~~~v~~~~~~~~ 372 (402)
-+++ ||+..... ...+++||...+........ ..+. ....+++ -.+|+||+..+. .|++|++..+
T Consensus 197 pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~--~~pdgi~~d~~G~lwv~~~~------gv~~~~~~g~ 268 (305)
T 3dr2_A 197 PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPD--GLPDGFCVDRGGWLWSSSGT------GVCVFDSDGQ 268 (305)
T ss_dssp TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSS--SCCCSEEECTTSCEEECCSS------EEEEECTTSC
T ss_pred CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCC--CCCCeEEECCCCCEEEecCC------cEEEECCCCC
Confidence 2454 77764321 25899999876542211100 1111 1112233 356778876631 3888887443
Q ss_pred cCceeeeEEEEeCCC
Q 040145 373 KWSFSVQWQVVDAPD 387 (402)
Q Consensus 373 ~~~~~~~W~~~~~~~ 387 (402)
.-..+..|.
T Consensus 269 ------~~~~~~~~~ 277 (305)
T 3dr2_A 269 ------LLGHIPTPG 277 (305)
T ss_dssp ------EEEEEECSS
T ss_pred ------EEEEEECCC
Confidence 334455554
No 212
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=94.77 E-value=3 Score=39.83 Aligned_cols=200 Identities=8% Similarity=0.049 Sum_probs=95.1
Q ss_pred EEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce-
Q 040145 121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF- 199 (402)
Q Consensus 121 ~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~- 199 (402)
+..+|.....-..+.... ....++++..++..++.|+.+ ..+.+||.....-..+.. .....
T Consensus 327 i~~w~~~~~~~~~~~~~~-------~~v~~~~~s~~g~~l~~~~~d-------g~v~~~~~~~~~~~~~~~---~~~~v~ 389 (577)
T 2ymu_A 327 VKLWNRNGQHLQTLTGHS-------SSVWGVAFSPDGQTIASASDD-------KTVKLWNRNGQLLQTLTG---HSSSVR 389 (577)
T ss_dssp EEEEETTSCEEEEECCCS-------SCEEEEEECTTSSEEEEEETT-------SEEEEEETTCCEEEEEEC---CSSCEE
T ss_pred EEEEeCCCCeeEEEeCCC-------CCEEEEEECCCCCEEEEEeCC-------CEEEEEcCCCCEEEEecC---CCCCeE
Confidence 455665554443332211 223344554567777777652 267888864433332221 11111
Q ss_pred EEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEe
Q 040145 200 ASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYD 276 (402)
Q Consensus 200 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd 276 (402)
+++.. +++.++.|+. ...+.+||.....-..+.... .....+.+ ++++++.++.+ ..+..||
T Consensus 390 ~~~~s~dg~~l~~~~~------d~~v~~~~~~~~~~~~~~~~~---~~v~~~~~s~d~~~l~~~~~d------~~v~~w~ 454 (577)
T 2ymu_A 390 GVAFSPDGQTIASASD------DKTVKLWNRNGQLLQTLTGHS---SSVWGVAFSPDDQTIASASDD------KTVKLWN 454 (577)
T ss_dssp EEEECTTSSCEEEEET------TSEEEEECTTCCEEEEEECCS---SCEEEEEECTTSSEEEEEETT------SEEEEEE
T ss_pred EEEECCCCCEEEEEeC------CCEEEEEeCCCCEEEEecCCC---CCeEEEEECCCCCEEEEEcCC------CEEEEEE
Confidence 22222 4566666664 346788886443333322211 11122222 66777766643 3678888
Q ss_pred CCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEE-EEeCCEEEEEec
Q 040145 277 PSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAV-NACDCRVYVVGR 355 (402)
Q Consensus 277 ~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~-~~~~~~i~v~GG 355 (402)
.....-..+.. ....-......-++++++.++. ...+.+||.....-..+.. -. ..-.++ ...++++++.|+
T Consensus 455 ~~~~~~~~~~~-~~~~v~~~~~spd~~~las~~~-d~~i~iw~~~~~~~~~~~~--h~---~~v~~l~~s~dg~~l~s~~ 527 (577)
T 2ymu_A 455 RNGQLLQTLTG-HSSSVRGVAFSPDGQTIASASD-DKTVKLWNRNGQLLQTLTG--HS---SSVRGVAFSPDGQTIASAS 527 (577)
T ss_dssp TTSCEEEEEEC-CSSCEEEEEECTTSCEEEEEET-TSEEEEEETTSCEEEEEEC--CS---SCEEEEEECTTSSCEEEEE
T ss_pred CCCCEEEEEcC-CCCCEEEEEEcCCCCEEEEEeC-CCEEEEEcCCCCEEEEEeC--CC---CCEEEEEEcCCCCEEEEEE
Confidence 75443333321 1111111111226777777665 4578889975443333321 00 111122 235778777787
Q ss_pred Ccee
Q 040145 356 NLHV 359 (402)
Q Consensus 356 ~~~~ 359 (402)
.+..
T Consensus 528 ~dg~ 531 (577)
T 2ymu_A 528 DDKT 531 (577)
T ss_dssp TTSE
T ss_pred CcCE
Confidence 6543
No 213
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=94.76 E-value=2.1 Score=38.40 Aligned_cols=189 Identities=9% Similarity=-0.069 Sum_probs=92.0
Q ss_pred CceEEEEECCCCceeecCCCcccccceEEEEECC-EEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEE
Q 040145 173 LDLVLKYEMQKNRWTVMNKMITARSFFASGVIGG-MIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAV 251 (402)
Q Consensus 173 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~ 251 (402)
...++++|..+++-+.+...+..........-++ .|+.... ...++++|+.++.-+.+...+..........
T Consensus 59 ~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~-------~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~ 131 (388)
T 3pe7_A 59 PWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD-------GRNLMRVDLATLEENVVYQVPAEWVGYGTWV 131 (388)
T ss_dssp SCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEET-------TTEEEEEETTTCCEEEEEECCTTEEEEEEEE
T ss_pred CceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeC-------CCeEEEEECCCCcceeeeechhhccccccee
Confidence 3479999999998777654432222111122234 4554442 2468889999887665544443322112222
Q ss_pred --ECCEEEEEccccc----------------CCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEE-CCEEEEEeccC
Q 040145 252 --LDGKLLVTEGWLW----------------PFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVV-YEHLFVVSELE 311 (402)
Q Consensus 252 --~~g~ly~~gG~~~----------------~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~-~~~l~~~gg~~ 311 (402)
-++++++.-.... .......++.+|+.+++-..+... . ...... ..- +|+.+++....
T Consensus 132 ~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~-~~~~~~~~sp~dg~~l~~~~~~ 209 (388)
T 3pe7_A 132 ANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE-N-QWLGHPIYRPYDDSTVAFCHEG 209 (388)
T ss_dssp ECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE-S-SCEEEEEEETTEEEEEEEEECS
T ss_pred ECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC-C-ccccccEECCCCCCEEEEEEec
Confidence 2444433211000 011124789999998876555431 1 112222 233 45544443322
Q ss_pred -----CcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCE-EEEEecCceeeeEEEEecccccc
Q 040145 312 -----RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCR-VYVVGRNLHVAVGHITRLSTSEK 372 (402)
Q Consensus 312 -----~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~-i~v~GG~~~~~~~~v~~~~~~~~ 372 (402)
...++.+|.++.....+.. ........+.....+|+ |+.+..........++.+|....
T Consensus 210 ~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (388)
T 3pe7_A 210 PHDLVDARMWLINEDGTNMRKVKT--HAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL 274 (388)
T ss_dssp CTTTSSCSEEEEETTSCCCEESCC--CCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred CCCCCcceEEEEeCCCCceEEeee--CCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence 3489999998776666542 11100111122234555 54444322222235777776443
No 214
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=94.76 E-value=2.1 Score=37.89 Aligned_cols=105 Identities=8% Similarity=-0.006 Sum_probs=54.7
Q ss_pred CeEEEEEEeCCCCceeEEEeecCCCcEEe-CCCCCCCCCCCCCCceEEEEcc-CCEEEEEeCccCCCCCCCceEEEEECC
Q 040145 105 PWLFVFAFHKCTGKIQWQVLDLTHYCWHT-IPAMPCKDKVCPHGFRCVSIPR-EGTLFVCGGMVSDVDCPLDLVLKYEMQ 182 (402)
Q Consensus 105 ~~l~~~gg~~~~~~~~~~~~d~~~~~W~~-l~~~~~~~~~~~~~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~d~~ 182 (402)
+.+++.++.+. .+.+||..+.+-.. +.... ....++.... ++.+++.|+.+ ..+.+||..
T Consensus 85 ~~~l~~~~~dg----~i~v~d~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~~l~s~~~d-------g~i~iwd~~ 146 (366)
T 3k26_A 85 HPLLAVAGSRG----IIRIINPITMQCIKHYVGHG-------NAINELKFHPRDPNLLLSVSKD-------HALRLWNIQ 146 (366)
T ss_dssp CEEEEEEETTC----EEEEECTTTCCEEEEEESCC-------SCEEEEEECSSCTTEEEEEETT-------SCEEEEETT
T ss_pred CCEEEEecCCC----EEEEEEchhceEeeeecCCC-------CcEEEEEECCCCCCEEEEEeCC-------CeEEEEEee
Confidence 34555554322 47788887665322 21111 2233444433 56777777752 269999998
Q ss_pred CCceee-cCCCcccccc-eEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCc
Q 040145 183 KNRWTV-MNKMITARSF-FASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGN 233 (402)
Q Consensus 183 t~~W~~-~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 233 (402)
+++-.. +..+...... ..+... ++..++.|+. ...+.+||..+..
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~ 194 (366)
T 3k26_A 147 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM------DHSLKLWRINSKR 194 (366)
T ss_dssp TTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEET------TSCEEEEESCSHH
T ss_pred cCeEEEEecccccccCceeEEEECCCCCEEEEecC------CCCEEEEECCCCc
Confidence 875433 2211211222 222322 4556666665 3468889887653
No 215
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=94.75 E-value=1.1 Score=41.24 Aligned_cols=134 Identities=9% Similarity=-0.003 Sum_probs=73.1
Q ss_pred eEEEEECCCCceeecCCCccccc-ceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE
Q 040145 175 LVLKYEMQKNRWTVMNKMITARS-FFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL 252 (402)
Q Consensus 175 ~~~~~d~~t~~W~~~~~~~~~r~-~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~ 252 (402)
.|++||..|++-..+-.+..... -.+++.. +++.++.|+. -..+.+||..+++-.. .+........+...
T Consensus 126 tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~------Dg~v~iWd~~~~~~~~--~~~~h~~~v~~~s~ 197 (420)
T 4gga_A 126 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS------SAEVQLWDVQQQKRLR--NMTSHSARVGSLSW 197 (420)
T ss_dssp EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET------TSCEEEEETTTTEEEE--EECCCSSCEEEEEE
T ss_pred EEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEEC------CCeEEEEEcCCCcEEE--EEeCCCCceEEEee
Confidence 79999999987665433332222 2233333 5677777776 3568899998875322 22222223344556
Q ss_pred CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccCCcEEEEEeCCCC
Q 040145 253 DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELERMKLKVYDPSTD 323 (402)
Q Consensus 253 ~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~~~~~~~yd~~~~ 323 (402)
++.+.+.|+.+ ..+..+|..................... ..-++..++.++. .+.+.++|..+.
T Consensus 198 ~~~~l~sgs~d------~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~-D~~v~i~~~~~~ 262 (420)
T 4gga_A 198 NSYILSSGSRS------GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN-DNLVNVWPSAPG 262 (420)
T ss_dssp ETTEEEEEETT------SEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET-TSCEEEEESSCC
T ss_pred CCCEEEEEeCC------CceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeec-cccceEEeeccc
Confidence 77777777653 3677788765443221110111111111 2235666666665 456778887654
No 216
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=94.69 E-value=1.9 Score=38.91 Aligned_cols=175 Identities=9% Similarity=0.041 Sum_probs=88.3
Q ss_pred eEEEEECCCCceeec--CCCcccccc--eEEEE--ECCEEEEEcCCCCCCCCCCeeEEEcCCCC--cEEEcCCCCCCCcc
Q 040145 175 LVLKYEMQKNRWTVM--NKMITARSF--FASGV--IGGMIYVAGGSSADLFELDSAEVLDPVKG--NWRTIASMGTNMAS 246 (402)
Q Consensus 175 ~~~~~d~~t~~W~~~--~~~~~~r~~--~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~~~~ 246 (402)
.+.+||..+++-... ...+..... .++.. .++.+++.|+. -..+.+||.... .-..+. .....
T Consensus 181 ~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~------D~~v~~wd~~~~~~~~~~~~---~h~~~ 251 (380)
T 3iz6_a 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSC------DTTVRLWDLRITSRAVRTYH---GHEGD 251 (380)
T ss_dssp CEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEET------TSCEEEEETTTTCCCCEEEC---CCSSC
T ss_pred cEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEEC------CCeEEEEECCCCCcceEEEC---CcCCC
Confidence 688999988764332 122222111 12222 25677888876 345788887632 112211 11111
Q ss_pred eeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeec-ccccc--C---CCceeE-EEECCEEEEEeccCCcEEEE
Q 040145 247 YDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESM-AVGLR--E---GWTGSS-VVVYEHLFVVSELERMKLKV 317 (402)
Q Consensus 247 ~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~-~~~~~--~---~~~~~~-~~~~~~l~~~gg~~~~~~~~ 317 (402)
...+.+ ++..++.|+.+ ..+..||+.++.-... ..... . ...... ...+|++++.|+. ...+.+
T Consensus 252 v~~v~~~p~~~~l~s~s~D------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-dg~i~v 324 (380)
T 3iz6_a 252 INSVKFFPDGQRFGTGSDD------GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS-NGDCYV 324 (380)
T ss_dssp CCEEEECTTSSEEEEECSS------SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT-TSCEEE
T ss_pred eEEEEEecCCCeEEEEcCC------CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEEC-CCCEEE
Confidence 222333 67777777754 3688999887643221 11000 0 011112 2236777777665 567999
Q ss_pred EeCCCCceee-cCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEec
Q 040145 318 YDPSTDSWET-IEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRL 367 (402)
Q Consensus 318 yd~~~~~W~~-~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~ 367 (402)
||..+.+-.. +............+.....+++.++.|+.++. ..+|.+
T Consensus 325 wd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~--i~iW~~ 373 (380)
T 3iz6_a 325 WDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKN--LKIWAF 373 (380)
T ss_dssp EETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSC--EEEEEC
T ss_pred EECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCC--EEEEec
Confidence 9987765432 22111111112222333457888888887655 334444
No 217
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=94.66 E-value=1.8 Score=36.83 Aligned_cols=191 Identities=12% Similarity=-0.014 Sum_probs=101.6
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK 183 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t 183 (402)
++.||+... ....+.+||+....-..+.... ...-.+.+.-..++.||+.... .+.+.++|+..
T Consensus 47 ~~~ly~~d~----~~~~I~~~~~~g~~~~~~~~~~-----~~~p~~ia~d~~~~~lyv~d~~-------~~~I~~~~~~g 110 (267)
T 1npe_A 47 DKVVYWTDI----SEPSIGRASLHGGEPTTIIRQD-----LGSPEGIALDHLGRTIFWTDSQ-------LDRIEVAKMDG 110 (267)
T ss_dssp TTEEEEEET----TTTEEEEEESSSCCCEEEECTT-----CCCEEEEEEETTTTEEEEEETT-------TTEEEEEETTS
T ss_pred CCEEEEEEC----CCCEEEEEecCCCCcEEEEECC-----CCCccEEEEEecCCeEEEEECC-------CCEEEEEEcCC
Confidence 567887652 2345788888765433322111 0022334443236899998643 34799999875
Q ss_pred CceeecCCCcccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE---CCEEEE
Q 040145 184 NRWTVMNKMITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL---DGKLLV 258 (402)
Q Consensus 184 ~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~---~g~ly~ 258 (402)
..-+.+..... .....+++- ++.||+...... ...++++++....-+.+.... ........+ ++.||+
T Consensus 111 ~~~~~~~~~~~-~~P~~i~vd~~~g~lyv~~~~~~----~~~I~~~~~dg~~~~~~~~~~--~~~P~gia~d~~~~~lyv 183 (267)
T 1npe_A 111 TQRRVLFDTGL-VNPRGIVTDPVRGNLYWTDWNRD----NPKIETSHMDGTNRRILAQDN--LGLPNGLTFDAFSSQLCW 183 (267)
T ss_dssp CSCEEEECSSC-SSEEEEEEETTTTEEEEEECCSS----SCEEEEEETTSCCCEEEECTT--CSCEEEEEEETTTTEEEE
T ss_pred CCEEEEEECCC-CCccEEEEeeCCCEEEEEECCCC----CcEEEEEecCCCCcEEEEECC--CCCCcEEEEcCCCCEEEE
Confidence 43333211111 112334443 589999863211 356788887644333332111 112233333 468998
Q ss_pred EcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCcee
Q 040145 259 TEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWE 326 (402)
Q Consensus 259 ~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~ 326 (402)
.-.. .+.+.+||+....-..+......+ . ..+.-++.+|+.... .+.+.++|+++.+-.
T Consensus 184 ~d~~------~~~I~~~~~~g~~~~~~~~~~~~P-~-gi~~d~~~lyva~~~-~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 184 VDAG------THRAECLNPAQPGRRKVLEGLQYP-F-AVTSYGKNLYYTDWK-TNSVIAMDLAISKEM 242 (267)
T ss_dssp EETT------TTEEEEEETTEEEEEEEEECCCSE-E-EEEEETTEEEEEETT-TTEEEEEETTTTEEE
T ss_pred EECC------CCEEEEEecCCCceEEEecCCCCc-e-EEEEeCCEEEEEECC-CCeEEEEeCCCCCce
Confidence 7543 357999999764322222111111 1 224458889987543 568999999876543
No 218
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.59 E-value=1.6 Score=39.28 Aligned_cols=148 Identities=11% Similarity=-0.004 Sum_probs=79.4
Q ss_pred CceEEEEECCCCceeecCCCcccccceEEEEEC--CE-EEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeE
Q 040145 173 LDLVLKYEMQKNRWTVMNKMITARSFFASGVIG--GM-IYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDA 249 (402)
Q Consensus 173 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~--~~-iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~ 249 (402)
...++++|..+++.+.+.. ............ ++ |+++.. .........++++|..+..++.+.. ..+......
T Consensus 167 ~~~l~~~d~~~g~~~~~~~--~~~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~ 242 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIHQ--DTAWLGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKE-HAEGESCTH 242 (396)
T ss_dssp CEEEEEEETTTCCEEEEEE--ESSCEEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSC-CCTTEEEEE
T ss_pred cceEEEEECCCCcEEeecc--CCcccccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeec-cCCCccccc
Confidence 4579999999988766542 122222233332 43 544432 2211112578999998887777654 211112222
Q ss_pred EEE--CCE-EEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE-CCEEEEEecc---------------
Q 040145 250 AVL--DGK-LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV-YEHLFVVSEL--------------- 310 (402)
Q Consensus 250 ~~~--~g~-ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~l~~~gg~--------------- 310 (402)
..+ +|+ |++.....+ .....++.+|+.+++...+.. .+. ......- +|+++++++.
T Consensus 243 ~~~spdg~~l~~~~~~~~--~~~~~l~~~d~~~g~~~~l~~-~~~--~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~ 317 (396)
T 3c5m_A 243 EFWIPDGSAMAYVSYFKG--QTDRVIYKANPETLENEEVMV-MPP--CSHLMSNFDGSLMVGDGCDAPVDVADADSYNIE 317 (396)
T ss_dssp EEECTTSSCEEEEEEETT--TCCEEEEEECTTTCCEEEEEE-CCS--EEEEEECSSSSEEEEEECCC----------CCC
T ss_pred eEECCCCCEEEEEecCCC--CccceEEEEECCCCCeEEeee-CCC--CCCCccCCCCceEEEecCCcceeeccccccccC
Confidence 222 565 444432211 111249999999887766543 221 1122334 7777666431
Q ss_pred CCcEEEEEeCCCCceeecC
Q 040145 311 ERMKLKVYDPSTDSWETIE 329 (402)
Q Consensus 311 ~~~~~~~yd~~~~~W~~~~ 329 (402)
....++.+|+.+.+...+.
T Consensus 318 ~~~~i~~~d~~~~~~~~l~ 336 (396)
T 3c5m_A 318 NDPFLYVLNTKAKSAQKLC 336 (396)
T ss_dssp CCCEEEEEETTTTBCCEEE
T ss_pred CCCcEEEEecccCceEEcc
Confidence 2358999999887766554
No 219
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=94.59 E-value=3.9 Score=40.38 Aligned_cols=113 Identities=17% Similarity=0.284 Sum_probs=69.6
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCc--eeecCCCccc--------ccceEEEEECCEEEEEcCCCCCCCCCCeeE
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVMNKMITA--------RSFFASGVIGGMIYVAGGSSADLFELDSAE 225 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 225 (402)
++.||+.... ..++.+|..|++ |+.-...+.. ....+.++.+++||+... ...+.
T Consensus 66 ~g~vyv~~~~--------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------dg~l~ 130 (668)
T 1kv9_A 66 DGVIYTSMSW--------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------DGRLI 130 (668)
T ss_dssp TTEEEEEEGG--------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------TSEEE
T ss_pred CCEEEEECCC--------CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-------CCEEE
Confidence 8999997642 379999999885 8875433211 012234567889888653 35689
Q ss_pred EEcCCCCc--EEEcCCCCCC--CcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCC--eee
Q 040145 226 VLDPVKGN--WRTIASMGTN--MASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WES 284 (402)
Q Consensus 226 ~yd~~t~~--W~~~~~~~~~--~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~ 284 (402)
.+|..|++ |+.-..-+.. ......++.++.+|+..+... ......++.||..+++ |+.
T Consensus 131 alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 131 ALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAE-YGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp EEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEE
T ss_pred EEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCC-cCCCCEEEEEECCCCcEEEEe
Confidence 99998876 8764321111 112233556888887433211 1112479999998875 875
No 220
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=94.56 E-value=2.9 Score=38.75 Aligned_cols=224 Identities=8% Similarity=0.048 Sum_probs=113.4
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEEECC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQ 182 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~ 182 (402)
++.||+.... ..+.++|+..+....+.... .....+++..++ .||+...... .....++.++..
T Consensus 149 ~g~Lyv~d~~-----~~I~~id~~~~~v~~~~~~~-------~~P~~ia~d~~G~~lyvad~~~~---~~~~~v~~~~~~ 213 (430)
T 3tc9_A 149 HNHLYLVGEQ-----HPTRLIDFEKEYVSTVYSGL-------SKVRTICWTHEADSMIITNDQNN---NDRPNNYILTRE 213 (430)
T ss_dssp EEEEEEEEBT-----EEEEEEETTTTEEEEEECCC-------SCEEEEEECTTSSEEEEEECCSC---TTSEEEEEEEGG
T ss_pred CCeEEEEeCC-----CcEEEEECCCCEEEEEecCC-------CCcceEEEeCCCCEEEEEeCCCC---cccceEEEEeCC
Confidence 4667776421 66889999988877664422 112333332344 5998865321 122356667764
Q ss_pred CCceeecCCCcccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCE-EE
Q 040145 183 KNRWTVMNKMITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGK-LL 257 (402)
Q Consensus 183 t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~-ly 257 (402)
. .+.....+..-...+.+++. ++.||+.--. ...+++||+.+..-..+...+.. .......+ +|+ ||
T Consensus 214 g-~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~------~~~V~~~~~~~~~~~~~~~~~~~-~~P~gia~~pdG~~ly 285 (430)
T 3tc9_A 214 S-GFKVITELTKGQNCNGAETHPINGELYFNSWN------AGQVFRYDFTTQETTPLFTIQDS-GWEFHIQFHPSGNYAY 285 (430)
T ss_dssp G-TSCSEEEEEECSSCCCEEECTTTCCEEEEETT------TTEEEEEETTTTEEEEEEECSSS-SCCEEEEECTTSSEEE
T ss_pred C-ceeeeeeeccCCCceEEEEeCCCCEEEEEECC------CCEEEEEECCCCcEEEEEEcCCC-CcceeEEEcCCCCEEE
Confidence 3 33311111112223444443 5788887532 45799999987765333222221 11222223 555 88
Q ss_pred EEcccccCCccCCcEEEEeCC--CCCeee---ccccc-----------cCCCce-e-EEEE----------CCEEEEEec
Q 040145 258 VTEGWLWPFFVSPRGQVYDPS--TDNWES---MAVGL-----------REGWTG-S-SVVV----------YEHLFVVSE 309 (402)
Q Consensus 258 ~~gG~~~~~~~~~~~~~yd~~--~~~W~~---~~~~~-----------~~~~~~-~-~~~~----------~~~l~~~gg 309 (402)
+.-.. .+.+++||.. ++.... +.... ...... . .+.+ ++.||+.-.
T Consensus 286 v~d~~------~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~ 359 (430)
T 3tc9_A 286 IVVVN------QHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDR 359 (430)
T ss_dssp EEETT------TTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEG
T ss_pred EEECC------CCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEEC
Confidence 87542 2467776654 222211 11000 000111 1 2333 368888754
Q ss_pred cCCcEEEEEeCCCCceeecCCCC-------------CCccccCCeEEEEe--CCEEEEEecCce
Q 040145 310 LERMKLKVYDPSTDSWETIEGPP-------------LPEQICKPFAVNAC--DCRVYVVGRNLH 358 (402)
Q Consensus 310 ~~~~~~~~yd~~~~~W~~~~~~~-------------~p~~~~~~~~~~~~--~~~i~v~GG~~~ 358 (402)
. ...|.++|+. .....+.+.. .........++++. ++.|||.--.++
T Consensus 360 ~-n~~I~~i~~~-G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~ 421 (430)
T 3tc9_A 360 E-NHCIRILTPQ-GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENR 421 (430)
T ss_dssp G-GTEEEEECTT-SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGT
T ss_pred C-CcEEEEECCC-CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCC
Confidence 3 5689999975 4555554321 11112345566665 588999865443
No 221
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=94.54 E-value=2.3 Score=37.51 Aligned_cols=233 Identities=11% Similarity=0.010 Sum_probs=111.4
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCC--------------
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSD-------------- 168 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~-------------- 168 (402)
+..|++...........++.+|..+++...+...+ . ........++ .|++.......
T Consensus 70 g~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-------~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 70 GKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-------N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp SSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-------E-EEEEEECTTSSEEEEEEECCCC---------CCCC-
T ss_pred CCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-------C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceee
Confidence 44555544433234556888998887766654333 1 2333443345 44444311000
Q ss_pred -C----CCCCceEEEEECCCCce-eecCCCcccccceEEEEECCEEEEEcCCCCCCC--C-CCeeEEEcCCCCcEEEcCC
Q 040145 169 -V----DCPLDLVLKYEMQKNRW-TVMNKMITARSFFASGVIGGMIYVAGGSSADLF--E-LDSAEVLDPVKGNWRTIAS 239 (402)
Q Consensus 169 -~----~~~~~~~~~~d~~t~~W-~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~--~-~~~~~~yd~~t~~W~~~~~ 239 (402)
+ ......++++|..+++. +.+.. + .........+.+++.+..+.... . ...++.+| ++.++.+..
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~---~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~ 215 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P---RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFE 215 (347)
T ss_dssp --------CEEEEEEEETTTTEEEEEEEE-E---TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEE
T ss_pred cCcccccCccceEEEEECCCCeEEeeecC-C---CcccccCCCCeEEEEEecccccccccccccEEEeC--CCceEEecc
Confidence 0 01135799999999887 65544 2 33334444333555554332111 1 34678888 677766543
Q ss_pred CCCCCcceeEEEECCE-EEEEccccc-CCccCCcEEEEeCCCCCeeeccccccCCCcee-EEEECCEEEEEeccC-CcEE
Q 040145 240 MGTNMASYDAAVLDGK-LLVTEGWLW-PFFVSPRGQVYDPSTDNWESMAVGLREGWTGS-SVVVYEHLFVVSELE-RMKL 315 (402)
Q Consensus 240 ~~~~~~~~~~~~~~g~-ly~~gG~~~-~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~-~~~~~~~l~~~gg~~-~~~~ 315 (402)
- .......-+|+ |++.+.... .......++.+| ++++..+...... .... .+..++ +|+.+..+ ...+
T Consensus 216 ~----~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~-~~~~~~~~sdg-~~~~~~~~~~~~l 287 (347)
T 2gop_A 216 K----VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDR-GVGQAKIKDGK-VYFTLFEEGSVNL 287 (347)
T ss_dssp E----ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCS-EEEEEEEETTE-EEEEEEETTEEEE
T ss_pred C----cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCc-ccCCccEEcCc-EEEEEecCCcEEE
Confidence 2 11222244665 444432211 111234788999 6666666432211 1221 222255 66665543 3456
Q ss_pred EEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEecc
Q 040145 316 KVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLS 368 (402)
Q Consensus 316 ~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~ 368 (402)
+ ++ +.+...+. +.. ....++.... .+++.+..... ..++|.+|
T Consensus 288 ~-~~--~g~~~~~~--~~~---~~v~~~~~s~-~~~~~~~~~~~-~~~l~~~~ 330 (347)
T 2gop_A 288 Y-IW--DGEIKPIA--KGR---HWIMGFDVDE-IVVYLKETATR-LRELFTWD 330 (347)
T ss_dssp E-EE--SSSEEEEE--CSS---SEEEEEEESS-SEEEEEECSSS-CCEEEEES
T ss_pred E-Ec--CCceEEEe--cCC---CeEEeeeeeC-cEEEEEcCCCC-hHHheEeC
Confidence 6 66 34444432 111 1112333334 66666554332 24677776
No 222
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=94.40 E-value=4.4 Score=40.19 Aligned_cols=182 Identities=9% Similarity=-0.072 Sum_probs=83.6
Q ss_pred ceEEEEECCC-CceeecCCC-cccccceEEEEEC-CEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCC----Ccc
Q 040145 174 DLVLKYEMQK-NRWTVMNKM-ITARSFFASGVIG-GMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTN----MAS 246 (402)
Q Consensus 174 ~~~~~~d~~t-~~W~~~~~~-~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~----~~~ 246 (402)
..++++|..+ ++-+.+... ........++.-+ ..|++...... .. ...++++|..+++...+...... ...
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~-~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 340 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRD-QK-KLDLVEVTLASNQQRVLAHETSPTWVPLHN 340 (741)
T ss_dssp EEEEEECSSTTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETT-SS-EEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred eEEEEEECCCCCceEEecCCCCcceEEEEEEeCCCCEEEEEEeccc-CC-eEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence 3788999988 765544321 1111111122233 34554433111 11 46789999999887655221111 011
Q ss_pred eeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE--EEECC-EEEEEeccC---CcEEEEEeC
Q 040145 247 YDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS--VVVYE-HLFVVSELE---RMKLKVYDP 320 (402)
Q Consensus 247 ~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~--~~~~~-~l~~~gg~~---~~~~~~yd~ 320 (402)
.....-+|++++.+..++ ...++.+|.... ...+... ....... ..-++ .|++.+..+ ...+|..+.
T Consensus 341 ~~~~spdg~~~~~~~~~g----~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 341 SLRFLDDGSILWSSERTG----FQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp CCEECTTSCEEEEECTTS----SCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred ceEECCCCeEEEEecCCC----ccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 122233777766665432 246888887655 5555431 1111111 12245 455555433 335666666
Q ss_pred CCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEeccc
Q 040145 321 STDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 321 ~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~ 369 (402)
....-..+.. .. .........+++.+++.........+++.++.
T Consensus 414 ~g~~~~~l~~--~~---~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~ 457 (741)
T 2ecf_A 414 QGGQPQRLSK--AP---GMHSASFARNASVYVDSWSNNSTPPQIELFRA 457 (741)
T ss_dssp TCCCCEECCC--SC---SEEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred CCCCeeeccc--CC---CceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence 5443344431 11 11122233456555544333223344555543
No 223
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=94.28 E-value=2.5 Score=36.90 Aligned_cols=191 Identities=14% Similarity=0.140 Sum_probs=97.5
Q ss_pred EEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCC
Q 040145 152 SIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPV 230 (402)
Q Consensus 152 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~ 230 (402)
++..++.||+..-. ...+++||+.++.-.... . +...++++.. ++++|+...... ...+..||+.
T Consensus 38 a~~~~g~lyv~d~~-------~~~I~~~d~~g~~~~~~~-~--~~~p~gia~~~dG~l~vad~~~~----~~~v~~~d~~ 103 (306)
T 2p4o_A 38 ASAPDGTIFVTNHE-------VGEIVSITPDGNQQIHAT-V--EGKVSGLAFTSNGDLVATGWNAD----SIPVVSLVKS 103 (306)
T ss_dssp EECTTSCEEEEETT-------TTEEEEECTTCCEEEEEE-C--SSEEEEEEECTTSCEEEEEECTT----SCEEEEEECT
T ss_pred EECCCCCEEEEeCC-------CCeEEEECCCCceEEEEe-C--CCCceeEEEcCCCcEEEEeccCC----cceEEEEcCC
Confidence 33346778887532 347999999865322211 1 1223344443 567888763211 1247889988
Q ss_pred CCcEEEcCCCCCCCcceeEEEE-CCEEEEEcccccCCccCCcEEEEeCCCCC---eeeccc----cccCCCcee-EEEE-
Q 040145 231 KGNWRTIASMGTNMASYDAAVL-DGKLLVTEGWLWPFFVSPRGQVYDPSTDN---WESMAV----GLREGWTGS-SVVV- 300 (402)
Q Consensus 231 t~~W~~~~~~~~~~~~~~~~~~-~g~ly~~gG~~~~~~~~~~~~~yd~~~~~---W~~~~~----~~~~~~~~~-~~~~- 300 (402)
+++.+.+...+..+.....+.. ++.+|+.... ...++++|+.++. |..-.. ......... .+..
T Consensus 104 ~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~------~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~d 177 (306)
T 2p4o_A 104 DGTVETLLTLPDAIFLNGITPLSDTQYLTADSY------RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF 177 (306)
T ss_dssp TSCEEEEEECTTCSCEEEEEESSSSEEEEEETT------TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE
T ss_pred CCeEEEEEeCCCccccCcccccCCCcEEEEECC------CCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcC
Confidence 8888776555544433333323 5567775421 2378999987642 211110 000111111 1233
Q ss_pred CCEEEEEeccCCcEEEEEeCCC-CceeecCCCCCCccccCCeEEEE-eCCEEEEEecCceeeeEEEEecccc
Q 040145 301 YEHLFVVSELERMKLKVYDPST-DSWETIEGPPLPEQICKPFAVNA-CDCRVYVVGRNLHVAVGHITRLSTS 370 (402)
Q Consensus 301 ~~~l~~~gg~~~~~~~~yd~~~-~~W~~~~~~~~p~~~~~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~~ 370 (402)
++.||+.-. ..+.|++||.+. .+..... ..... ....++++ .+|+|||.-...+. |.++++.
T Consensus 178 g~~lyv~d~-~~~~I~~~~~~~~g~~~~~~--~~~~~-~~P~gi~vd~dG~l~va~~~~~~----V~~~~~~ 241 (306)
T 2p4o_A 178 GNFLYVSNT-EKMLLLRIPVDSTDKPGEPE--IFVEQ-TNIDDFAFDVEGNLYGATHIYNS----VVRIAPD 241 (306)
T ss_dssp TTEEEEEET-TTTEEEEEEBCTTSCBCCCE--EEEES-CCCSSEEEBTTCCEEEECBTTCC----EEEECTT
T ss_pred CCEEEEEeC-CCCEEEEEEeCCCCCCCccE--EEecc-CCCCCeEECCCCCEEEEeCCCCe----EEEECCC
Confidence 457887643 367899999875 2211110 00000 11223333 46788887654333 7777764
No 224
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=94.24 E-value=0.048 Score=49.85 Aligned_cols=181 Identities=13% Similarity=0.081 Sum_probs=72.1
Q ss_pred CCCeEEEEEEeCCCCceeEEEeecCCCc--EEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEE
Q 040145 103 KDPWLFVFAFHKCTGKIQWQVLDLTHYC--WHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYE 180 (402)
Q Consensus 103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~--W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d 180 (402)
.++.+|+...+ ..++++|..+.+ |+.-. . +. ....++ .++.+|+.++. ...++.+|
T Consensus 8 ~~~~v~~gs~d-----g~v~a~d~~tG~~~W~~~~--~-~~-----~s~p~~--~~g~~~v~~s~-------dg~l~a~d 65 (369)
T 2hz6_A 8 PETLLFVSTLD-----GSLHAVSKRTGSIKWTLKE--D-PV-----LQVPTH--VEEPAFLPDPN-------DGSLYTLG 65 (369)
T ss_dssp CTTEEEEEETT-----SEEEEEETTTCCEEEEEEC--C-CS-----CCCC-------CCEEECTT-------TCCEEEC-
T ss_pred eCCEEEEEcCC-----CEEEEEECCCCCEEEEecC--C-Cc-----eecceE--cCCCEEEEeCC-------CCEEEEEE
Confidence 45667765422 248899988775 75432 1 11 011112 26667777643 22699999
Q ss_pred CCCC--ceeecCCCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCCCCcceeEEEECCE
Q 040145 181 MQKN--RWTVMNKMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGTNMASYDAAVLDGK 255 (402)
Q Consensus 181 ~~t~--~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~g~ 255 (402)
..|+ .|+.-...+... ..+.+. .++.||+ |+. ...+..+|+.|++ |+.-..-. ...+..++.
T Consensus 66 ~~tG~~~w~~~~~~~~~~-~~sp~~~~~~~v~~-g~~------dg~v~a~D~~tG~~~w~~~~~~~-----~~~~p~~~~ 132 (369)
T 2hz6_A 66 SKNNEGLTKLPFTIPELV-QASPCRSSDGILYM-GKK------QDIWYVIDLLTGEKQQTLSSAFA-----DSLSPSTSL 132 (369)
T ss_dssp ----CCSEECSCCHHHHH-TTCSCC-----CCC-CEE------EEEEEEECCC---------------------------
T ss_pred CCCCceeeeeeccCcccc-ccCceEecCCEEEE-EeC------CCEEEEEECCCCcEEEEecCCCc-----ccccccCCE
Confidence 9876 465422211111 111111 3445543 322 3468899998765 65432110 011113455
Q ss_pred EEEEcccccCCccCCcEEEEeCCCCC--eeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCc--eee
Q 040145 256 LLVTEGWLWPFFVSPRGQVYDPSTDN--WESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDS--WET 327 (402)
Q Consensus 256 ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~--W~~ 327 (402)
+|+. +.+ ..+.++|+.+++ |+.-...............++.+|+. .. ...++.+|..+.+ |+.
T Consensus 133 v~~~-~~d------g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~-~~-dg~v~a~d~~tG~~~W~~ 199 (369)
T 2hz6_A 133 LYLG-RTE------YTITMYDTKTRELRWNATYFDYAASLPEDDVDYKMSHFVS-NG-DGLVVTVDSESGDVLWIQ 199 (369)
T ss_dssp EEEE-EEE------EEEECCCSSSSSCCCEEEEEEECCBCCCCCTTCCCCEEEE-ET-SCEEEEECTTTCCEEEEE
T ss_pred EEEE-ecC------CEEEEEECCCCCEEEeEecccccCccccCCccccceEEEE-CC-CCEEEEEECCCCcEEEEe
Confidence 5553 321 268889988764 87432111000000000112556553 22 3467788876553 654
No 225
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=94.09 E-value=5 Score=39.61 Aligned_cols=118 Identities=13% Similarity=0.154 Sum_probs=66.9
Q ss_pred CCCeEEEEEEeCCCCceeEEEeecCCCc--EEeCCCCCCCCC---CC-CCCceEEEEccCCEEEEEeCccCCCCCCCceE
Q 040145 103 KDPWLFVFAFHKCTGKIQWQVLDLTHYC--WHTIPAMPCKDK---VC-PHGFRCVSIPREGTLFVCGGMVSDVDCPLDLV 176 (402)
Q Consensus 103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~--W~~l~~~~~~~~---~~-~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~ 176 (402)
.++.+|+... ...++++|..+.+ |+.-...+.... .+ ....+.++. ++.||+... ...+
T Consensus 65 ~~g~vyv~~~-----~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~v~~~--------dg~l 129 (668)
T 1kv9_A 65 HDGVIYTSMS-----WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--GDKVYVGTL--------DGRL 129 (668)
T ss_dssp ETTEEEEEEG-----GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--BTEEEEECT--------TSEE
T ss_pred ECCEEEEECC-----CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE--CCEEEEEcC--------CCEE
Confidence 4778887653 2358899988776 876433221000 00 001122333 788887542 2379
Q ss_pred EEEECCCCc--eeecCCCcc--cccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEE
Q 040145 177 LKYEMQKNR--WTVMNKMIT--ARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRT 236 (402)
Q Consensus 177 ~~~d~~t~~--W~~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~ 236 (402)
+.+|..|++ |+.-..-+. .....+.++.++++|+..+..... ....+..||..|++ |+.
T Consensus 130 ~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~-~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 130 IALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYG-VRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp EEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTC-CBCEEEEEETTTCCEEEEE
T ss_pred EEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcC-CCCEEEEEECCCCcEEEEe
Confidence 999999985 876432111 112223455688888754322211 14679999999876 875
No 226
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=93.96 E-value=3.4 Score=37.25 Aligned_cols=180 Identities=13% Similarity=0.141 Sum_probs=88.0
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEE-ccCCEEEEEeCccCCCCCCCceEEEEECCCC-c-eeecCCCcccc
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSI-PREGTLFVCGGMVSDVDCPLDLVLKYEMQKN-R-WTVMNKMITAR 196 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~-~-W~~~~~~~~~r 196 (402)
.+.+||..+..-...-....+. ..........+ ..++.+++.|+.+ ..+.+||..+. . -..+.. ...
T Consensus 181 ~i~~wd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~sgs~D-------~~v~~wd~~~~~~~~~~~~~--h~~ 250 (380)
T 3iz6_a 181 TCVLWDVTTGQRISIFGSEFPS-GHTADVLSLSINSLNANMFISGSCD-------TTVRLWDLRITSRAVRTYHG--HEG 250 (380)
T ss_dssp CEEEECTTTCCEEEEECCCSSS-SCCSCEEEEEECSSSCCEEEEEETT-------SCEEEEETTTTCCCCEEECC--CSS
T ss_pred cEEEEEcCCCcEEEEeecccCC-CCccCeEEEEeecCCCCEEEEEECC-------CeEEEEECCCCCcceEEECC--cCC
Confidence 3778888877643321111100 00011122222 2366788888763 26889998632 1 111111 011
Q ss_pred cceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEc-CCCCC----CCcceeEEE--ECCEEEEEcccccCCcc
Q 040145 197 SFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTI-ASMGT----NMASYDAAV--LDGKLLVTEGWLWPFFV 268 (402)
Q Consensus 197 ~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~-~~~~~----~~~~~~~~~--~~g~ly~~gG~~~~~~~ 268 (402)
.-.+++.. ++..++.|+. -..+.+||..++.-... ...+. ......++. .+|++++.|+.+
T Consensus 251 ~v~~v~~~p~~~~l~s~s~------D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d----- 319 (380)
T 3iz6_a 251 DINSVKFFPDGQRFGTGSD------DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN----- 319 (380)
T ss_dssp CCCEEEECTTSSEEEEECS------SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT-----
T ss_pred CeEEEEEecCCCeEEEEcC------CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECC-----
Confidence 11223332 5566777775 34588999988753322 11111 111122222 267777777653
Q ss_pred CCcEEEEeCCCCCeee-ccccccCCCce--eEE--EECCEEEEEeccCCcEEEEEeCCCC
Q 040145 269 SPRGQVYDPSTDNWES-MAVGLREGWTG--SSV--VVYEHLFVVSELERMKLKVYDPSTD 323 (402)
Q Consensus 269 ~~~~~~yd~~~~~W~~-~~~~~~~~~~~--~~~--~~~~~l~~~gg~~~~~~~~yd~~~~ 323 (402)
..+.+||..+.+-.. +.. ......+ .++ .-++..++.|+. ...+.+||....
T Consensus 320 -g~i~vwd~~~~~~~~~~~~-~~~~h~~~v~~l~~s~dg~~l~sgs~-D~~i~iW~~~~~ 376 (380)
T 3iz6_a 320 -GDCYVWDTLLAEMVLNLGT-LQNSHEGRISCLGLSSDGSALCTGSW-DKNLKIWAFSGH 376 (380)
T ss_dssp -SCEEEEETTTCCEEEEECC-SCSSCCCCCCEEEECSSSSEEEEECT-TSCEEEEECCSS
T ss_pred -CCEEEEECCCCceEEEEec-ccCCCCCceEEEEECCCCCEEEEeeC-CCCEEEEecCCC
Confidence 368999987765332 211 1111111 122 236777777776 446777776543
No 227
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=93.87 E-value=1.1 Score=40.51 Aligned_cols=197 Identities=11% Similarity=-0.073 Sum_probs=93.9
Q ss_pred eeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEcc-CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccccc
Q 040145 119 IQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPR-EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARS 197 (402)
Q Consensus 119 ~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~ 197 (402)
..++.+|+.+.+-..+..-+ .......+.. +++.+++.... ........++++|..++..+.+........
T Consensus 168 ~~l~~~d~~~g~~~~l~~~~-------~~~~~~~~sp~dg~~l~~~~~~-~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 239 (388)
T 3pe7_A 168 CRLMRVDLKTGESTVILQEN-------QWLGHPIYRPYDDSTVAFCHEG-PHDLVDARMWLINEDGTNMRKVKTHAEGES 239 (388)
T ss_dssp EEEEEEETTTCCEEEEEEES-------SCEEEEEEETTEEEEEEEEECS-CTTTSSCSEEEEETTSCCCEESCCCCTTEE
T ss_pred ceEEEEECCCCceEEeecCC-------ccccccEECCCCCCEEEEEEec-CCCCCcceEEEEeCCCCceEEeeeCCCCcc
Confidence 56888998888766554222 2223344434 45444333221 111235589999998877666654221111
Q ss_pred ceEEEEE-CCE-EEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCC-----cceeEEEECCE-EEEEccccc--CCc
Q 040145 198 FFASGVI-GGM-IYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNM-----ASYDAAVLDGK-LLVTEGWLW--PFF 267 (402)
Q Consensus 198 ~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~-----~~~~~~~~~g~-ly~~gG~~~--~~~ 267 (402)
....... +++ |+......+. . ...++++|+.+++-+.+..++... .......-+|+ |++.....+ ...
T Consensus 240 ~~~~~~spdg~~l~~~~~~~~~-~-~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 317 (388)
T 3pe7_A 240 CTHEFWVPDGSALVYVSYLKGS-P-DRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIE 317 (388)
T ss_dssp EEEEEECTTSSCEEEEEEETTC-C-CEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------C
T ss_pred cccceECCCCCEEEEEecCCCC-C-cceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccC
Confidence 1122222 443 5444322111 1 235999999998876664443210 00012222333 332210000 001
Q ss_pred cCCcEEEEeCCCCCeeeccccccC----------CCceeEEEECCEEEEEecc-C-CcEEEEEeCCCCce
Q 040145 268 VSPRGQVYDPSTDNWESMAVGLRE----------GWTGSSVVVYEHLFVVSEL-E-RMKLKVYDPSTDSW 325 (402)
Q Consensus 268 ~~~~~~~yd~~~~~W~~~~~~~~~----------~~~~~~~~~~~~l~~~gg~-~-~~~~~~yd~~~~~W 325 (402)
....++.+|+.+++-..+...... ........-+|+.+++... + ...++.+|.....|
T Consensus 318 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~~~~ 387 (388)
T 3pe7_A 318 NDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPESVW 387 (388)
T ss_dssp CCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCGGGG
T ss_pred CCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECChhcc
Confidence 124789999998876666532210 1111122335654444332 2 45799999887766
No 228
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=93.85 E-value=5.7 Score=39.39 Aligned_cols=256 Identities=10% Similarity=-0.072 Sum_probs=123.6
Q ss_pred CCCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECC
Q 040145 103 KDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQ 182 (402)
Q Consensus 103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~ 182 (402)
.+.++|..-.........+++.+.....+..+-.................+..+|+.++++..... .....++++|..
T Consensus 82 dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G--~~~~~i~v~d~~ 159 (710)
T 2xdw_A 82 KGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASG--SDWVTIKFMKVD 159 (710)
T ss_dssp ETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETT--CSCEEEEEEETT
T ss_pred ECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCC--CceEEEEEEECC
Confidence 356666665443333345677776666666542211100000012344455556665555433211 122389999999
Q ss_pred CCceeecCCCcccccceEEEEE-CC-EEEEEcCCCCC---------CCCCCeeEEEcCCCCcEE--EcCCCCC-CCccee
Q 040145 183 KNRWTVMNKMITARSFFASGVI-GG-MIYVAGGSSAD---------LFELDSAEVLDPVKGNWR--TIASMGT-NMASYD 248 (402)
Q Consensus 183 t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~---------~~~~~~~~~yd~~t~~W~--~~~~~~~-~~~~~~ 248 (402)
+++...... .... ....+.. ++ .||........ ......+++++..++..+ .+-..+. +.....
T Consensus 160 tg~~~~~~~-~~~~-~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~ 237 (710)
T 2xdw_A 160 GAKELPDVL-ERVK-FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG 237 (710)
T ss_dssp TTEEEEEEE-EEEC-SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred CCCCCcccc-cCcc-cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEE
Confidence 998765321 1111 1223333 44 44444322110 011345888888877632 2212111 222222
Q ss_pred EE-EECCEEEEEcccccCCccCCcEEEEeCCC------C--CeeeccccccCCCceeEEEECCEEEEEeccC--CcEEEE
Q 040145 249 AA-VLDGKLLVTEGWLWPFFVSPRGQVYDPST------D--NWESMAVGLREGWTGSSVVVYEHLFVVSELE--RMKLKV 317 (402)
Q Consensus 249 ~~-~~~g~ly~~gG~~~~~~~~~~~~~yd~~~------~--~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~--~~~~~~ 317 (402)
.. .-+|+..++....... ..+.++.+|..+ . .+..+..... ........-++.||+.+..+ ...++.
T Consensus 238 ~~~SpDg~~l~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~ 315 (710)
T 2xdw_A 238 AELSDDGRYVLLSIREGCD-PVNRLWYCDLQQESNGITGILKWVKLIDNFE-GEYDYVTNEGTVFTFKTNRHSPNYRLIN 315 (710)
T ss_dssp EEECTTSCEEEEEEECSSS-SCCEEEEEEGGGSSSSSCSSCCCEEEECSSS-SCEEEEEEETTEEEEEECTTCTTCEEEE
T ss_pred EEEcCCCCEEEEEEEccCC-CccEEEEEECcccccccCCccceEEeeCCCC-cEEEEEeccCCEEEEEECCCCCCCEEEE
Confidence 22 2266644444322111 135789999876 4 5776654221 11111123467788776543 457999
Q ss_pred EeCCCC---ceeecCCCCCCccccCCeEEEEe-CCEEEEEecCceeeeEEEEeccc
Q 040145 318 YDPSTD---SWETIEGPPLPEQICKPFAVNAC-DCRVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 318 yd~~~~---~W~~~~~~~~p~~~~~~~~~~~~-~~~i~v~GG~~~~~~~~v~~~~~ 369 (402)
+|..+. .|+.+.. ..+. .....+... ++.|++....+. ...++.++.
T Consensus 316 ~d~~~~~~~~~~~l~~-~~~~--~~~~~~~~~~~~~lv~~~~~~g--~~~l~~~~~ 366 (710)
T 2xdw_A 316 IDFTDPEESKWKVLVP-EHEK--DVLEWVACVRSNFLVLCYLHDV--KNTLQLHDL 366 (710)
T ss_dssp EETTSCCGGGCEEEEC-CCSS--CEEEEEEEETTTEEEEEEEETT--EEEEEEEET
T ss_pred EeCCCCCcccceeccC-CCCC--CeEEEEEEEcCCEEEEEEEECC--EEEEEEEEC
Confidence 999875 5887752 1111 111234444 777777765432 244666664
No 229
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=93.71 E-value=3.4 Score=36.42 Aligned_cols=143 Identities=11% Similarity=-0.032 Sum_probs=77.0
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEE-EECCEEEEEcCCCCCCCCCCeeEEEcCCCCcE
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASG-VIGGMIYVAGGSSADLFELDSAEVLDPVKGNW 234 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 234 (402)
++.+|+++.. ...+++||+.+++.+.... + ....+++ .-++++|+... ..+.+||+.+++.
T Consensus 60 ~~~l~~~d~~-------~~~i~~~d~~~~~~~~~~~-~--~~v~~i~~~~dg~l~v~~~--------~gl~~~d~~~g~~ 121 (326)
T 2ghs_A 60 SGTAWWFNIL-------ERELHELHLASGRKTVHAL-P--FMGSALAKISDSKQLIASD--------DGLFLRDTATGVL 121 (326)
T ss_dssp TTEEEEEEGG-------GTEEEEEETTTTEEEEEEC-S--SCEEEEEEEETTEEEEEET--------TEEEEEETTTCCE
T ss_pred CCEEEEEECC-------CCEEEEEECCCCcEEEEEC-C--CcceEEEEeCCCeEEEEEC--------CCEEEEECCCCcE
Confidence 4688887644 2379999999886554321 1 1122232 24678777642 3589999999888
Q ss_pred EEcCCCCCC--CcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEE-ECC-EEEEEe
Q 040145 235 RTIASMGTN--MASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVV-VYE-HLFVVS 308 (402)
Q Consensus 235 ~~~~~~~~~--~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~-~~~-~l~~~g 308 (402)
+.+...+.. ........+ +|++|+.............++.|| +++...+..... .....+. -++ .+|+..
T Consensus 122 ~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~--~~~~i~~s~dg~~lyv~~ 197 (326)
T 2ghs_A 122 TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADIS--IPNSICFSPDGTTGYFVD 197 (326)
T ss_dssp EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEES--SEEEEEECTTSCEEEEEE
T ss_pred EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCc--ccCCeEEcCCCCEEEEEE
Confidence 766443221 112222233 678877432111111123688888 455544422111 1111222 245 467664
Q ss_pred ccCCcEEEEEeCC
Q 040145 309 ELERMKLKVYDPS 321 (402)
Q Consensus 309 g~~~~~~~~yd~~ 321 (402)
. ....+++||.+
T Consensus 198 ~-~~~~I~~~d~~ 209 (326)
T 2ghs_A 198 T-KVNRLMRVPLD 209 (326)
T ss_dssp T-TTCEEEEEEBC
T ss_pred C-CCCEEEEEEcc
Confidence 3 35689999975
No 230
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=93.54 E-value=3.6 Score=39.55 Aligned_cols=171 Identities=15% Similarity=0.073 Sum_probs=87.4
Q ss_pred eEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--
Q 040145 175 LVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL-- 252 (402)
Q Consensus 175 ~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-- 252 (402)
.+.+||..+++-+.+...+. ......-+++.+++++.+... ...++++|..++.++.+...... ......
T Consensus 133 ~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~--~~~i~~~d~~~g~~~~l~~~~~~---~~~~~~Sp 204 (582)
T 3o4h_A 133 RVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGG--RVSLFTSNLSSGGLRVFDSGEGS---FSSASISP 204 (582)
T ss_dssp CEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETT--EEEEEEEETTTCCCEEECCSSCE---EEEEEECT
T ss_pred CceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCC--CeEEEEEcCCCCCceEeecCCCc---cccceECC
Confidence 34588998887666543222 122222355544444432211 25699999999988876432221 122222
Q ss_pred CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE--------EEECCEEEEEeccCCcEEEEEeCCCCc
Q 040145 253 DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS--------VVVYEHLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 253 ~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~--------~~~~~~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
+|+.++.+...+ ...++.+|+.+++...+.. ......... ..-+|++++.+.. ...+.+|+. .+
T Consensus 205 DG~~l~~~~~~~----~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~~~~~~~-~g~~~l~~~--g~ 276 (582)
T 3o4h_A 205 GMKVTAGLETAR----EARLVTVDPRDGSVEDLEL-PSKDFSSYRPTAITWLGYLPDGRLAVVARR-EGRSAVFID--GE 276 (582)
T ss_dssp TSCEEEEEECSS----CEEEEEECTTTCCEEECCC-SCSHHHHHCCSEEEEEEECTTSCEEEEEEE-TTEEEEEET--TE
T ss_pred CCCEEEEccCCC----eeEEEEEcCCCCcEEEccC-CCcChhhhhhccccceeEcCCCcEEEEEEc-CCcEEEEEE--CC
Confidence 676555332211 1368999999888763221 111001111 2236677766554 446777877 43
Q ss_pred eeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEeccc
Q 040145 325 WETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 325 W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~ 369 (402)
... .+. ....++...++++++.++.... ..+++.+|.
T Consensus 277 ~~~-----~~~--~~v~~~~~sdg~~l~~~s~~~~-p~~l~~~d~ 313 (582)
T 3o4h_A 277 RVE-----APQ--GNHGRVVLWRGKLVTSHTSLST-PPRIVSLPS 313 (582)
T ss_dssp EEC-----CCS--SEEEEEEEETTEEEEEEEETTE-EEEEEEETT
T ss_pred eec-----cCC--CceEEEEecCCEEEEEEcCCCC-CCeEEEEcC
Confidence 322 111 1111233238888777664433 356676664
No 231
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=93.52 E-value=5.9 Score=38.52 Aligned_cols=118 Identities=21% Similarity=0.256 Sum_probs=70.2
Q ss_pred eEEEEECCEEEEEcCCCCCCCCCCeeEEEcC-CCCc--EEEcCCCCCC-----Cc---ceeEEE--ECCE----EEEEcc
Q 040145 199 FASGVIGGMIYVAGGSSADLFELDSAEVLDP-VKGN--WRTIASMGTN-----MA---SYDAAV--LDGK----LLVTEG 261 (402)
Q Consensus 199 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~-~t~~--W~~~~~~~~~-----~~---~~~~~~--~~g~----ly~~gG 261 (402)
.+.++.++.||+.... ...++.+|. .|++ |+.-...... .+ ....++ .+++ ||+...
T Consensus 56 ~tP~v~~g~vyv~~~~------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~ 129 (599)
T 1w6s_A 56 GAPLVVDGKMYIHTSF------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL 129 (599)
T ss_dssp SCCEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT
T ss_pred eccEEECCEEEEEeCC------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC
Confidence 3445679999998753 246899999 7775 9875433221 11 112344 5777 887543
Q ss_pred cccCCccCCcEEEEeCCCCC--eeeccccccC--CCceeEEEECCEEEEEecc----CCcEEEEEeCCCCc--eeecC
Q 040145 262 WLWPFFVSPRGQVYDPSTDN--WESMAVGLRE--GWTGSSVVVYEHLFVVSEL----ERMKLKVYDPSTDS--WETIE 329 (402)
Q Consensus 262 ~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~--~~~~~~~~~~~~l~~~gg~----~~~~~~~yd~~~~~--W~~~~ 329 (402)
. ..++++|.++++ |+.-...... ......++.++++|+-.+. ....+..||.++.+ |+.-.
T Consensus 130 d-------g~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 130 D-------GNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp T-------SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred C-------CEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 1 368999998875 8753221111 1122225678888764321 13589999998764 87543
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=93.47 E-value=0.076 Score=48.46 Aligned_cols=139 Identities=14% Similarity=0.082 Sum_probs=58.0
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCc--eeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCC-
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKG- 232 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~- 232 (402)
++.||+.+. ...++.+|..|++ |+.-. .......+..++.+|+.++. ...++++|.+++
T Consensus 9 ~~~v~~gs~--------dg~v~a~d~~tG~~~W~~~~----~~~~s~p~~~~g~~~v~~s~------dg~l~a~d~~tG~ 70 (369)
T 2hz6_A 9 ETLLFVSTL--------DGSLHAVSKRTGSIKWTLKE----DPVLQVPTHVEEPAFLPDPN------DGSLYTLGSKNNE 70 (369)
T ss_dssp TTEEEEEET--------TSEEEEEETTTCCEEEEEEC----CCSCCCC-----CCEEECTT------TCCEEEC-----C
T ss_pred CCEEEEEcC--------CCEEEEEECCCCCEEEEecC----CCceecceEcCCCEEEEeCC------CCEEEEEECCCCc
Confidence 667776543 1279999999885 76533 11112223456678887654 345889998765
Q ss_pred -cEEEcCCCCCCCcceeEEE-ECCEEEEEcccccCCccCCcEEEEeCCCCC--eeeccccccCCCceeEEEECCEEEEEe
Q 040145 233 -NWRTIASMGTNMASYDAAV-LDGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WESMAVGLREGWTGSSVVVYEHLFVVS 308 (402)
Q Consensus 233 -~W~~~~~~~~~~~~~~~~~-~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~l~~~g 308 (402)
.|+.-...+... ..+.+. .++.||+ |+.+ ..++++|+.+++ |+.-... . .. .+-.++.+|+ |
T Consensus 71 ~~w~~~~~~~~~~-~~sp~~~~~~~v~~-g~~d------g~v~a~D~~tG~~~w~~~~~~-~-~~---~~p~~~~v~~-~ 136 (369)
T 2hz6_A 71 GLTKLPFTIPELV-QASPCRSSDGILYM-GKKQ------DIWYVIDLLTGEKQQTLSSAF-A-DS---LSPSTSLLYL-G 136 (369)
T ss_dssp CSEECSCCHHHHH-TTCSCC-----CCC-CEEE------EEEEEECCC---------------------------EEE-E
T ss_pred eeeeeeccCcccc-ccCceEecCCEEEE-EeCC------CEEEEEECCCCcEEEEecCCC-c-cc---ccccCCEEEE-E
Confidence 465321111000 011111 3555554 3321 268999998764 7543221 0 00 1124455554 4
Q ss_pred ccCCcEEEEEeCCCCc--eee
Q 040145 309 ELERMKLKVYDPSTDS--WET 327 (402)
Q Consensus 309 g~~~~~~~~yd~~~~~--W~~ 327 (402)
+. ...+..||+++.+ |+.
T Consensus 137 ~~-dg~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 137 RT-EYTITMYDTKTRELRWNA 156 (369)
T ss_dssp EE-EEEEECCCSSSSSCCCEE
T ss_pred ec-CCEEEEEECCCCCEEEeE
Confidence 33 3478899987654 764
No 233
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=93.45 E-value=3.7 Score=35.95 Aligned_cols=205 Identities=8% Similarity=0.058 Sum_probs=96.3
Q ss_pred eEEEeecCCCcEE-eCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccc
Q 040145 120 QWQVLDLTHYCWH-TIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSF 198 (402)
Q Consensus 120 ~~~~~d~~~~~W~-~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~ 198 (402)
.+.+||..+++-. .+..-. ....++.+..++.+++.|+.+ ..+.+||.....-..+..- ...-
T Consensus 88 ~v~~wd~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~l~s~s~D-------~~i~vwd~~~~~~~~~~~h--~~~v 151 (319)
T 3frx_A 88 TLRLWDVATGETYQRFVGHK-------SDVMSVDIDKKASMIISGSRD-------KTIKVWTIKGQCLATLLGH--NDWV 151 (319)
T ss_dssp EEEEEETTTTEEEEEEECCS-------SCEEEEEECTTSCEEEEEETT-------SCEEEEETTSCEEEEECCC--SSCE
T ss_pred EEEEEECCCCCeeEEEccCC-------CcEEEEEEcCCCCEEEEEeCC-------CeEEEEECCCCeEEEEecc--CCcE
Confidence 3778888877532 221111 223344444567777887763 2688888865433222211 1111
Q ss_pred eEEEEE-------CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccC
Q 040145 199 FASGVI-------GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVS 269 (402)
Q Consensus 199 ~~~~~~-------~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~ 269 (402)
..+... ++..++.|+. -..+.+||..+..-.. .+.........+.+ ++++++.|+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~--~~~~h~~~v~~~~~sp~g~~l~s~~~d------ 217 (319)
T 3frx_A 152 SQVRVVPNEKADDDSVTIISAGN------DKMVKAWNLNQFQIEA--DFIGHNSNINTLTASPDGTLIASAGKD------ 217 (319)
T ss_dssp EEEEECCC------CCEEEEEET------TSCEEEEETTTTEEEE--EECCCCSCEEEEEECTTSSEEEEEETT------
T ss_pred EEEEEccCCCCCCCccEEEEEeC------CCEEEEEECCcchhhe--eecCCCCcEEEEEEcCCCCEEEEEeCC------
Confidence 112221 2335566655 3457888887754322 11111122222222 67777777753
Q ss_pred CcEEEEeCCCCCeeeccccccCCCceeEE-EECCEEEEEeccCCcEEEEEeCCCCc-eeecCCCCCC---cccc-CCeEE
Q 040145 270 PRGQVYDPSTDNWESMAVGLREGWTGSSV-VVYEHLFVVSELERMKLKVYDPSTDS-WETIEGPPLP---EQIC-KPFAV 343 (402)
Q Consensus 270 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~-~~~~~l~~~gg~~~~~~~~yd~~~~~-W~~~~~~~~p---~~~~-~~~~~ 343 (402)
..+.+||+.+.+=...-. .. ......+ .-++.+++.+.. ..+.+|+..... ...+.. ... .... ...++
T Consensus 218 g~i~iwd~~~~~~~~~~~-~~-~~v~~~~~sp~~~~la~~~~--~~i~v~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~ 292 (319)
T 3frx_A 218 GEIMLWNLAAKKAMYTLS-AQ-DEVFSLAFSPNRYWLAAATA--TGIKVFSLDPQYLVDDLRP-EFAGYSKAAEPHAVSL 292 (319)
T ss_dssp CEEEEEETTTTEEEEEEE-CC-SCEEEEEECSSSSEEEEEET--TEEEEEEETTEEEEEEECC-CCTTCCGGGCCCEEEE
T ss_pred CeEEEEECCCCcEEEEec-CC-CcEEEEEEcCCCCEEEEEcC--CCcEEEEeCcCeeeeccCc-cccccccCcCcceeEE
Confidence 368899987754211111 11 1111112 225555555443 346666665432 222221 111 0001 11122
Q ss_pred -EEeCCEEEEEecCcee
Q 040145 344 -NACDCRVYVVGRNLHV 359 (402)
Q Consensus 344 -~~~~~~i~v~GG~~~~ 359 (402)
...+|+.++.|+.++.
T Consensus 293 ~~spdg~~l~sg~~Dg~ 309 (319)
T 3frx_A 293 AWSADGQTLFAGYTDNV 309 (319)
T ss_dssp EECTTSSEEEEEETTSC
T ss_pred EECCCCCEEEEeecCce
Confidence 2357888888887654
No 234
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=93.41 E-value=3.7 Score=35.91 Aligned_cols=149 Identities=6% Similarity=0.056 Sum_probs=75.9
Q ss_pred eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccc-eEEEEE-CCEEEEEcCCCCCCCCCCeeEE
Q 040145 149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSF-FASGVI-GGMIYVAGGSSADLFELDSAEV 226 (402)
Q Consensus 149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~ 226 (402)
..+.+..++..++.|+.+ ..+.+||..+++-.. .+...... .++... ++.+++.|+. -..+.+
T Consensus 69 ~~~~~s~dg~~l~s~s~D-------~~v~~wd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~s~------D~~i~v 133 (319)
T 3frx_A 69 QDCTLTADGAYALSASWD-------KTLRLWDVATGETYQ--RFVGHKSDVMSVDIDKKASMIISGSR------DKTIKV 133 (319)
T ss_dssp EEEEECTTSSEEEEEETT-------SEEEEEETTTTEEEE--EEECCSSCEEEEEECTTSCEEEEEET------TSCEEE
T ss_pred EEEEECCCCCEEEEEeCC-------CEEEEEECCCCCeeE--EEccCCCcEEEEEEcCCCCEEEEEeC------CCeEEE
Confidence 344454567777777763 279999998875321 11111111 122222 4566777765 345778
Q ss_pred EcCCCCcEEEcCCCCCCCcceeEEEE--------CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEE
Q 040145 227 LDPVKGNWRTIASMGTNMASYDAAVL--------DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSV 298 (402)
Q Consensus 227 yd~~t~~W~~~~~~~~~~~~~~~~~~--------~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~ 298 (402)
||.....-..+.... .....+.+ ++.+++.|+.+ ..+..||+.+.+-...- ......-..+
T Consensus 134 wd~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~--~~h~~~v~~~ 202 (319)
T 3frx_A 134 WTIKGQCLATLLGHN---DWVSQVRVVPNEKADDDSVTIISAGND------KMVKAWNLNQFQIEADF--IGHNSNINTL 202 (319)
T ss_dssp EETTSCEEEEECCCS---SCEEEEEECCC------CCEEEEEETT------SCEEEEETTTTEEEEEE--CCCCSCEEEE
T ss_pred EECCCCeEEEEeccC---CcEEEEEEccCCCCCCCccEEEEEeCC------CEEEEEECCcchhheee--cCCCCcEEEE
Confidence 888655433322111 11111111 23355555543 36888998765422111 1111111112
Q ss_pred EE--CCEEEEEeccCCcEEEEEeCCCCc
Q 040145 299 VV--YEHLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 299 ~~--~~~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
.+ ++++++.|+. ...+.+||..+.+
T Consensus 203 ~~sp~g~~l~s~~~-dg~i~iwd~~~~~ 229 (319)
T 3frx_A 203 TASPDGTLIASAGK-DGEIMLWNLAAKK 229 (319)
T ss_dssp EECTTSSEEEEEET-TCEEEEEETTTTE
T ss_pred EEcCCCCEEEEEeC-CCeEEEEECCCCc
Confidence 22 6777777775 4579999998764
No 235
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=93.10 E-value=2 Score=39.43 Aligned_cols=105 Identities=10% Similarity=0.019 Sum_probs=56.2
Q ss_pred CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCe
Q 040145 205 GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNW 282 (402)
Q Consensus 205 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W 282 (402)
++.+++.|+. ...+.+||..+.+-...-..+.......++.+ ++.+++.|+.+ ..+.+||+.+++-
T Consensus 181 ~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d------g~i~iwd~~~~~~ 248 (437)
T 3gre_A 181 EKSLLVALTN------LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTR------GIIDIWDIRFNVL 248 (437)
T ss_dssp SCEEEEEEET------TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETT------SCEEEEETTTTEE
T ss_pred CCCEEEEEeC------CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCC------CeEEEEEcCCccE
Confidence 4677777775 45789999988763222111111122223333 67777777754 3689999987543
Q ss_pred eeccccccCCCceeE-EEE------CCEEEEEeccCCcEEEEEeCCCCc
Q 040145 283 ESMAVGLREGWTGSS-VVV------YEHLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 283 ~~~~~~~~~~~~~~~-~~~------~~~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
...-. ... ..... +.. ++.+++.|+. ...+.+||..+.+
T Consensus 249 ~~~~~-~~~-~~~v~~~~~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~ 294 (437)
T 3gre_A 249 IRSWS-FGD-HAPITHVEVCQFYGKNSVIVVGGSS-KTFLTIWNFVKGH 294 (437)
T ss_dssp EEEEB-CTT-CEEEEEEEECTTTCTTEEEEEEEST-TEEEEEEETTTTE
T ss_pred EEEEe-cCC-CCceEEEEeccccCCCccEEEEEcC-CCcEEEEEcCCCc
Confidence 22111 011 11111 111 3445555544 5679999998664
No 236
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=93.09 E-value=5 Score=36.46 Aligned_cols=143 Identities=11% Similarity=0.032 Sum_probs=78.5
Q ss_pred eEEEEECCC--CceeecCCCcccccceEEEEE---CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCC---CCCC--
Q 040145 175 LVLKYEMQK--NRWTVMNKMITARSFFASGVI---GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASM---GTNM-- 244 (402)
Q Consensus 175 ~~~~~d~~t--~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~---~~~~-- 244 (402)
-+++++... .+|+.+.+.......++++.- .+.||+.+..... -..++..+-...+|+.+... +...
T Consensus 32 Gl~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~---g~gl~~s~D~G~tW~~~~~~~~~~~~~~~ 108 (394)
T 3b7f_A 32 GAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHL---GPTVFRSDDGGGNWTEATRPPAFNKAPEG 108 (394)
T ss_dssp EEEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--C---CEEEEEESSTTSCCEECSBCCCCCCCC--
T ss_pred ceEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCC---CccEEEeCCCCCCceECCccccCCCcccc
Confidence 477888765 689876422222223334433 4678877642110 12567777677889988532 2111
Q ss_pred ------cceeEEEE-----CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccc--cC--------------CCceeE
Q 040145 245 ------ASYDAAVL-----DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGL--RE--------------GWTGSS 297 (402)
Q Consensus 245 ------~~~~~~~~-----~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~--~~--------------~~~~~~ 297 (402)
........ ++.||+.+.. ..+++.+-...+|+.+.... +. ...-..
T Consensus 109 ~~~~~~~~i~~l~~~~~~~~~~l~~g~~~-------ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~ 181 (394)
T 3b7f_A 109 ETGRVVDHVFWLTPGHASEPGTWYAGTSP-------QGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHS 181 (394)
T ss_dssp --CCCCCEEEEEEECCTTSTTCEEEEEET-------TEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEE
T ss_pred cccccccceeEEEeCCCCCCCEEEEEecC-------CcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeE
Confidence 01112222 4677775421 25788888888999885311 11 111112
Q ss_pred EEE----CCEEEEEeccCCcEEEEEeCCCCceeecC
Q 040145 298 VVV----YEHLFVVSELERMKLKVYDPSTDSWETIE 329 (402)
Q Consensus 298 ~~~----~~~l~~~gg~~~~~~~~yd~~~~~W~~~~ 329 (402)
+.+ .+.||+.... ..+++.+-...+|+.+.
T Consensus 182 i~~d~~~~~~l~vg~~~--ggl~~s~DgG~tW~~~~ 215 (394)
T 3b7f_A 182 ILVDPRDPKHLYIGMSS--GGVFESTDAGTDWKPLN 215 (394)
T ss_dssp EEECTTCTTCEEEEEET--BEEEEESSTTSSCEECC
T ss_pred EEECCCCCCEEEEEECC--CCEEEECCCCCCceECC
Confidence 333 3578875432 35888888888999875
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=93.07 E-value=4.1 Score=35.46 Aligned_cols=197 Identities=16% Similarity=0.227 Sum_probs=96.3
Q ss_pred CCeEEEEEEeCCCCceeEEEeecC-CCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLT-HYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQ 182 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~-~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~ 182 (402)
++.+|+.. ....+++||+. ...|..-...+ . ....+...++.||+... ...++.||+.
T Consensus 107 ~~~l~v~t-----~~~~l~~~d~~g~~~~~~~~~~~-------~-~~~~~~~~~g~l~vgt~--------~~~l~~~d~~ 165 (330)
T 3hxj_A 107 EDILYVTS-----MDGHLYAINTDGTEKWRFKTKKA-------I-YATPIVSEDGTIYVGSN--------DNYLYAINPD 165 (330)
T ss_dssp TTEEEEEC-----TTSEEEEECTTSCEEEEEECSSC-------C-CSCCEECTTSCEEEECT--------TSEEEEECTT
T ss_pred CCEEEEEe-----cCCEEEEEcCCCCEEEEEcCCCc-------e-eeeeEEcCCCEEEEEcC--------CCEEEEECCC
Confidence 56666643 12347889987 33465432211 1 11223323667776432 1378999998
Q ss_pred CCc--eeecCCCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCC-CcEEEcCCCCCCCcceeEEEE-CCEEE
Q 040145 183 KNR--WTVMNKMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVK-GNWRTIASMGTNMASYDAAVL-DGKLL 257 (402)
Q Consensus 183 t~~--W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t-~~W~~~~~~~~~~~~~~~~~~-~g~ly 257 (402)
++ |+...+ ... ..+.+. .++.||+.. ..+.+||... ..|+...... . ..+.+.. +|.||
T Consensus 166 -g~~~~~~~~~--~~~-~~~~~~d~~g~l~v~t---------~~l~~~d~~g~~~~~~~~~~~--~-~~~~~~~~~g~l~ 229 (330)
T 3hxj_A 166 -GTEKWRFKTN--DAI-TSAASIGKDGTIYFGS---------DKVYAINPDGTEKWNFYAGYW--T-VTRPAISEDGTIY 229 (330)
T ss_dssp -SCEEEEEECS--SCC-CSCCEECTTCCEEEES---------SSEEEECTTSCEEEEECCSSC--C-CSCCEECTTSCEE
T ss_pred -CCEeEEEecC--CCc-eeeeEEcCCCEEEEEe---------CEEEEECCCCcEEEEEccCCc--c-eeceEECCCCeEE
Confidence 43 554322 111 122233 366777654 3478888432 2466542211 1 1112222 56787
Q ss_pred EEcccccCCccCCcEEEEeCCCCC-eeeccccccCCCceeEEEE-CCEEEEEeccCCcEEEEEeCCCC-ceeecCCCCCC
Q 040145 258 VTEGWLWPFFVSPRGQVYDPSTDN-WESMAVGLREGWTGSSVVV-YEHLFVVSELERMKLKVYDPSTD-SWETIEGPPLP 334 (402)
Q Consensus 258 ~~gG~~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~~~~~~~~~~-~~~l~~~gg~~~~~~~~yd~~~~-~W~~~~~~~~p 334 (402)
+... ...+.+||..... |..... .......+.- ++.||+... ...+++||+..+ .|..- ++
T Consensus 230 v~t~-------~~gl~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~v~t~--~ggl~~~d~~g~~~~~~~----~~ 293 (330)
T 3hxj_A 230 VTSL-------DGHLYAINPDGTEKWRFKTG---KRIESSPVIGNTDTIYFGSY--DGHLYAINPDGTEKWNFE----TG 293 (330)
T ss_dssp EEET-------TTEEEEECTTSCEEEEEECS---SCCCSCCEECTTSCEEEECT--TCEEEEECTTSCEEEEEE----CS
T ss_pred EEcC-------CCeEEEECCCCCEeEEeeCC---CCccccceEcCCCeEEEecC--CCCEEEECCCCcEEEEEE----cC
Confidence 7532 1367888875443 543221 1111122333 678886432 347999998544 35532 22
Q ss_pred ccccCCeEEEE-eCCEEEEEec
Q 040145 335 EQICKPFAVNA-CDCRVYVVGR 355 (402)
Q Consensus 335 ~~~~~~~~~~~-~~~~i~v~GG 355 (402)
. ....+++. .+|+||+.+.
T Consensus 294 ~--~~~~~~~~d~~g~l~~gt~ 313 (330)
T 3hxj_A 294 S--WIIATPVIDENGTIYFGTR 313 (330)
T ss_dssp S--CCCSCCEECTTCCEEEECT
T ss_pred C--ccccceEEcCCCEEEEEcC
Confidence 1 12223344 6788888543
No 238
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=93.03 E-value=4.6 Score=37.07 Aligned_cols=146 Identities=7% Similarity=-0.003 Sum_probs=70.3
Q ss_pred CEEEEEeCccCCCCCCCceEEEEECCCC--------ceeecCCCccc-ccceEEEEE-CCE-EEEEcCCCCCCCCCCeeE
Q 040145 157 GTLFVCGGMVSDVDCPLDLVLKYEMQKN--------RWTVMNKMITA-RSFFASGVI-GGM-IYVAGGSSADLFELDSAE 225 (402)
Q Consensus 157 ~~i~v~GG~~~~~~~~~~~~~~~d~~t~--------~W~~~~~~~~~-r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~ 225 (402)
+.+++.|+.+ ..+.+||..+. ....+..+... ....++... ++. +++.|+. ...+.
T Consensus 141 ~~~lat~~~d-------g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~------dg~i~ 207 (430)
T 2xyi_A 141 ACVIATKTPS-------SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD------DHTIC 207 (430)
T ss_dssp EEEEEEECSS-------SCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT------TSCEE
T ss_pred CcEEEEECCC-------CcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC------CCeEE
Confidence 5677777652 26889998752 12221111111 111222332 233 6677765 34588
Q ss_pred EEcCCCC---cEEE--cCCCCCCCcceeEEEE---CCEEEEEcccccCCccCCcEEEEeCCCCC-eeeccccccCCCcee
Q 040145 226 VLDPVKG---NWRT--IASMGTNMASYDAAVL---DGKLLVTEGWLWPFFVSPRGQVYDPSTDN-WESMAVGLREGWTGS 296 (402)
Q Consensus 226 ~yd~~t~---~W~~--~~~~~~~~~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~~~~~~ 296 (402)
+||..+. .+.. ...+.........+.. ++.+++.++.+ ..+.+||+.+.. ...+.........-.
T Consensus 208 vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 208 LWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD------QKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp EEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT------SEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred EEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC------CeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 8898763 1211 1111111111222222 45677666643 378999998653 222211011111111
Q ss_pred EEEE--CC-EEEEEeccCCcEEEEEeCCC
Q 040145 297 SVVV--YE-HLFVVSELERMKLKVYDPST 322 (402)
Q Consensus 297 ~~~~--~~-~l~~~gg~~~~~~~~yd~~~ 322 (402)
++.+ ++ .+++.|+. ...+.+||..+
T Consensus 282 ~i~~~p~~~~~l~tg~~-dg~v~vwd~~~ 309 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSA-DKTVALWDLRN 309 (430)
T ss_dssp EEEECSSCTTEEEEEET-TSEEEEEETTC
T ss_pred EEEeCCCCCCEEEEEeC-CCeEEEEeCCC
Confidence 2233 23 47777776 45799999876
No 239
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=92.93 E-value=7.1 Score=37.79 Aligned_cols=113 Identities=15% Similarity=0.238 Sum_probs=66.4
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCc--eeecCCCccc---c---cceEEEEECCEEEEEcCCCCCCCCCCeeEEE
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVMNKMITA---R---SFFASGVIGGMIYVAGGSSADLFELDSAEVL 227 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~---r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y 227 (402)
++.||+.... +.++.+|..|++ |+.-...+.. . ...+.++.+++||+... ...+..+
T Consensus 68 ~g~vyv~~~~--------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~-------dg~l~Al 132 (582)
T 1flg_A 68 DGVIYVTASY--------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-------DASVVAL 132 (582)
T ss_dssp TTEEEEEETT--------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-------TTEEEEE
T ss_pred CCEEEEEcCC--------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC-------CCEEEEE
Confidence 8999998653 249999999885 8774433221 1 11344567899988643 3568999
Q ss_pred cCCCCc--EEEcCCCCCCC--cceeEEEECC------EEEEEcccccCCccCCcEEEEeCCCCC--eee
Q 040145 228 DPVKGN--WRTIASMGTNM--ASYDAAVLDG------KLLVTEGWLWPFFVSPRGQVYDPSTDN--WES 284 (402)
Q Consensus 228 d~~t~~--W~~~~~~~~~~--~~~~~~~~~g------~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~ 284 (402)
|.+|++ |+.-...+... ....-++.++ .||+ |...........++.||..+++ |+.
T Consensus 133 D~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~e~~~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 133 NKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGDEFGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp ESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEE-CCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred ECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEE-eccccccCCCCEEEEEECCCCCEEeec
Confidence 998886 87532211111 1112234555 6665 3221111113478999998765 864
No 240
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=92.83 E-value=8 Score=38.12 Aligned_cols=152 Identities=9% Similarity=0.022 Sum_probs=75.4
Q ss_pred eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCC-cccccc-eEEEEEC-C--EEEEEcCCCCCCCCCCe
Q 040145 149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKM-ITARSF-FASGVIG-G--MIYVAGGSSADLFELDS 223 (402)
Q Consensus 149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~-~~~r~~-~~~~~~~-~--~iyv~GG~~~~~~~~~~ 223 (402)
.++.+..++..++.|+.+ ..+.+||.....-..+... ...+.. .++.... + ..++.|+. -..
T Consensus 476 ~~~~~s~~~~~l~s~s~D-------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~------d~~ 542 (694)
T 3dm0_A 476 LSVAFSLDNRQIVSASRD-------RTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW------DKT 542 (694)
T ss_dssp EEEEECTTSSCEEEEETT-------SCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEET------TSC
T ss_pred EEEEEeCCCCEEEEEeCC-------CEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeC------CCe
Confidence 334444466667777652 2688888765432222211 111111 2222222 2 35666665 346
Q ss_pred eEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE-
Q 040145 224 AEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV- 300 (402)
Q Consensus 224 ~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~- 300 (402)
+.+||..+..-... +.........+.+ ++++++.|+.+ ..+.+||+.+++-...- .........+..
T Consensus 543 v~vwd~~~~~~~~~--~~~h~~~v~~v~~spdg~~l~sg~~D------g~i~iwd~~~~~~~~~~--~~~~~v~~~~~sp 612 (694)
T 3dm0_A 543 VKVWNLSNCKLRST--LAGHTGYVSTVAVSPDGSLCASGGKD------GVVLLWDLAEGKKLYSL--EANSVIHALCFSP 612 (694)
T ss_dssp EEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETT------SBCEEEETTTTEEEECC--BCSSCEEEEEECS
T ss_pred EEEEECCCCcEEEE--EcCCCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCceEEEe--cCCCcEEEEEEcC
Confidence 88999887654321 1111122222333 67777777754 36888998876422111 111111112222
Q ss_pred CCEEEEEeccCCcEEEEEeCCCCce
Q 040145 301 YEHLFVVSELERMKLKVYDPSTDSW 325 (402)
Q Consensus 301 ~~~l~~~gg~~~~~~~~yd~~~~~W 325 (402)
++.+++. +. ...+.+||..+..-
T Consensus 613 ~~~~l~~-~~-~~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 613 NRYWLCA-AT-EHGIKIWDLESKSI 635 (694)
T ss_dssp SSSEEEE-EE-TTEEEEEETTTTEE
T ss_pred CCcEEEE-Ec-CCCEEEEECCCCCC
Confidence 4444444 43 34689999987653
No 241
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=92.81 E-value=5.2 Score=39.51 Aligned_cols=62 Identities=11% Similarity=-0.180 Sum_probs=33.2
Q ss_pred CeeEEEcCCCCc-EEEcCCCCCC---CcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeec
Q 040145 222 DSAEVLDPVKGN-WRTIASMGTN---MASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESM 285 (402)
Q Consensus 222 ~~~~~yd~~t~~-W~~~~~~~~~---~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~ 285 (402)
..+.++|..++. ...+...... ......+.. +|++++.....+. ....++.+|+.+++...+
T Consensus 228 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~--~~~~i~~~d~~~g~~~~~ 295 (723)
T 1xfd_A 228 ISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQ--NVSILTLCDATTGVCTKK 295 (723)
T ss_dssp EEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTS--CEEEEEEEETTTCCEEEE
T ss_pred eEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCC--CeEEEEEEeCCCCcceEE
Confidence 378889988776 2444322111 111122222 7886655433211 123688999988876554
No 242
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=92.75 E-value=4.6 Score=35.16 Aligned_cols=170 Identities=18% Similarity=0.280 Sum_probs=85.8
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECC-CCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCC-
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQ-KNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKG- 232 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~-t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~- 232 (402)
++.||+... ...++.||+. ...|+...+.+ ...+.+.. ++.||+... ...++.||+...
T Consensus 107 ~~~l~v~t~--------~~~l~~~d~~g~~~~~~~~~~~---~~~~~~~~~~g~l~vgt~-------~~~l~~~d~~g~~ 168 (330)
T 3hxj_A 107 EDILYVTSM--------DGHLYAINTDGTEKWRFKTKKA---IYATPIVSEDGTIYVGSN-------DNYLYAINPDGTE 168 (330)
T ss_dssp TTEEEEECT--------TSEEEEECTTSCEEEEEECSSC---CCSCCEECTTSCEEEECT-------TSEEEEECTTSCE
T ss_pred CCEEEEEec--------CCEEEEEcCCCCEEEEEcCCCc---eeeeeEEcCCCEEEEEcC-------CCEEEEECCCCCE
Confidence 788887532 2368999998 22465543211 11222333 567776432 356899999822
Q ss_pred cEEEcCCCCCCCcceeEEE-ECCEEEEEcccccCCccCCcEEEEeCCC-CCeeeccccccCCCceeEEEECCEEEEEecc
Q 040145 233 NWRTIASMGTNMASYDAAV-LDGKLLVTEGWLWPFFVSPRGQVYDPST-DNWESMAVGLREGWTGSSVVVYEHLFVVSEL 310 (402)
Q Consensus 233 ~W~~~~~~~~~~~~~~~~~-~~g~ly~~gG~~~~~~~~~~~~~yd~~~-~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~ 310 (402)
.|..... .... ...+. .+|.||+.. ..+++||... ..|...... .........-+|.||+...
T Consensus 169 ~~~~~~~--~~~~-~~~~~d~~g~l~v~t---------~~l~~~d~~g~~~~~~~~~~--~~~~~~~~~~~g~l~v~t~- 233 (330)
T 3hxj_A 169 KWRFKTN--DAIT-SAASIGKDGTIYFGS---------DKVYAINPDGTEKWNFYAGY--WTVTRPAISEDGTIYVTSL- 233 (330)
T ss_dssp EEEEECS--SCCC-SCCEECTTCCEEEES---------SSEEEECTTSCEEEEECCSS--CCCSCCEECTTSCEEEEET-
T ss_pred eEEEecC--CCce-eeeEEcCCCEEEEEe---------CEEEEECCCCcEEEEEccCC--cceeceEECCCCeEEEEcC-
Confidence 2654322 1111 12222 367787754 2688999432 246544221 1111112223567877532
Q ss_pred CCcEEEEEeCCCCc-eeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEeccc
Q 040145 311 ERMKLKVYDPSTDS-WETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 311 ~~~~~~~yd~~~~~-W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~ 369 (402)
...++.||+.... |..-.. .. .....+...++.||+.... +.++.||+
T Consensus 234 -~~gl~~~~~~g~~~~~~~~~--~~---~~~~~~~~~~g~l~v~t~~-----ggl~~~d~ 282 (330)
T 3hxj_A 234 -DGHLYAINPDGTEKWRFKTG--KR---IESSPVIGNTDTIYFGSYD-----GHLYAINP 282 (330)
T ss_dssp -TTEEEEECTTSCEEEEEECS--SC---CCSCCEECTTSCEEEECTT-----CEEEEECT
T ss_pred -CCeEEEECCCCCEeEEeeCC--CC---ccccceEcCCCeEEEecCC-----CCEEEECC
Confidence 3478888876553 543321 11 1111222337788875532 24777875
No 243
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=92.69 E-value=5.1 Score=35.54 Aligned_cols=237 Identities=11% Similarity=0.082 Sum_probs=111.1
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK 183 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t 183 (402)
++.+|+...........+..++ ..+....+............-..+++..++.||+..-... ......+++||+.+
T Consensus 27 ~g~~~v~~~~~~~~~~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~--~~~~~~i~~~d~~t 102 (343)
T 2qe8_A 27 DGRLFLSLHQFYQPEMQVAELT--QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQ--SKSVPKLVAWDTLN 102 (343)
T ss_dssp TSCEEEEECGGGCCSCSEEEEE--TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHH--HTSCCEEEEEETTT
T ss_pred CCCEEEEeCCCCCCceEEEEEC--CCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCC--cCCCCeEEEEECCC
Confidence 5677776421111114566666 4444444322111100111223344434688999752210 00134799999999
Q ss_pred Ccee-ec--CCC-ccc-ccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCc-EEEcCC---C-CCCC-------
Q 040145 184 NRWT-VM--NKM-ITA-RSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGN-WRTIAS---M-GTNM------- 244 (402)
Q Consensus 184 ~~W~-~~--~~~-~~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~---~-~~~~------- 244 (402)
++-. .+ +.. ..+ .....+++- ++.+|+...... ....+.+||+.+++ |+.+.. + +.+.
T Consensus 103 g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~---~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~ 179 (343)
T 2qe8_A 103 NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD---DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGV 179 (343)
T ss_dssp TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG---GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTE
T ss_pred CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC---CCCeEEEEECCCCCEEEEecCCCcccccccceeECCE
Confidence 8733 22 211 111 122344444 478998853110 14678999998665 665532 1 1000
Q ss_pred ---------------cceeEEEE--CC-EEEEEcccccCCccCCcEEEEeCCC---CC------eeeccccccC-CCcee
Q 040145 245 ---------------ASYDAAVL--DG-KLLVTEGWLWPFFVSPRGQVYDPST---DN------WESMAVGLRE-GWTGS 296 (402)
Q Consensus 245 ---------------~~~~~~~~--~g-~ly~~gG~~~~~~~~~~~~~yd~~~---~~------W~~~~~~~~~-~~~~~ 296 (402)
.......+ +| .||+.... .+.++.+|... .. +..+...-.. .-.+.
T Consensus 180 ~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgi 253 (343)
T 2qe8_A 180 PVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH------STSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGI 253 (343)
T ss_dssp ECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS------CSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCE
T ss_pred EEEeccCCCceeceecccceeEeccCCCEEEEEeCC------CCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceE
Confidence 01111222 33 35554221 12566666421 00 1111100000 11122
Q ss_pred EEEECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE-eCCEEEEEecCc
Q 040145 297 SVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA-CDCRVYVVGRNL 357 (402)
Q Consensus 297 ~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~~i~v~GG~~ 357 (402)
++--+|.||+... ..+.|.+||+++.+...+.. .+ ......++++ .+++|||.....
T Consensus 254 a~d~~G~l~va~~-~~~~V~~~d~~~G~~~~~~~--~~-~~~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 254 SIDKDHNIYVGDL-AHSAIGVITSADRAYKLLVT--DE-KLSWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp EECTTCCEEEEEG-GGTEEEEEETTTTEEEEEEE--CG-GGSCEEEEEECTTSCEEEEECCG
T ss_pred EECCCCCEEEEcc-CCCeEEEEECCCCCEEEEEE--CC-ceecCCeeEECCCCcEEEEeCcc
Confidence 2334688888754 36789999996566666542 22 1233445554 468899998754
No 244
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=92.68 E-value=2.5 Score=35.31 Aligned_cols=140 Identities=11% Similarity=0.083 Sum_probs=76.7
Q ss_pred cCCEEEEEeCccCCCCCCCceEEEEEC--C-------------CCceeecCCCcccccceEEEE--ECCEEEEEcCCCCC
Q 040145 155 REGTLFVCGGMVSDVDCPLDLVLKYEM--Q-------------KNRWTVMNKMITARSFFASGV--IGGMIYVAGGSSAD 217 (402)
Q Consensus 155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~--~-------------t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~ 217 (402)
..+++|++-|. .+|+++. . +..|..||..+......-++. .++++|++-|
T Consensus 12 ~~ge~~fFk~~---------~~wr~~~~~~~~~~~~~~~p~~I~~~Wp~LP~~~f~~~~iDAa~~~~~g~~~fFkg---- 78 (225)
T 3oyo_A 12 SEYEVYFFAKN---------KYVRLHYTPGASSDTILTNLRLISSGFPSLAGTPFAEPGIDCSFHTEASEAYVFSG---- 78 (225)
T ss_dssp STTEEEEEETT---------EEEEEECCTTCSCCEEEEEEEEHHHHCGGGTTSTTTTTCCSEEEECSTTEEEEEET----
T ss_pred CCCEEEEEECC---------EEEEEecccccccCcccCCceehhhhcccCCCccCCCCCEeEEEEcCCCeEEEEcC----
Confidence 37899999764 5777761 1 223444442222112222332 5789999987
Q ss_pred CCCCCeeEEEcCCCC----cEEE----c----CCCCCC--CcceeEEEE---CCEEEEEcccccCCccCCcEEEEeCCCC
Q 040145 218 LFELDSAEVLDPVKG----NWRT----I----ASMGTN--MASYDAAVL---DGKLLVTEGWLWPFFVSPRGQVYDPSTD 280 (402)
Q Consensus 218 ~~~~~~~~~yd~~t~----~W~~----~----~~~~~~--~~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~yd~~~~ 280 (402)
+..++||..++ .... + +.+|.. .....++.. ++++|+|-|. ..++||..++
T Consensus 79 ----~~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG~--------~yw~~d~~~~ 146 (225)
T 3oyo_A 79 ----NHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKGN--------KYVRIAYDSK 146 (225)
T ss_dssp ----TEEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEETT--------EEEEEETTTT
T ss_pred ----CEEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeCC--------eEEEEECCCC
Confidence 35788866432 1111 1 223321 112334433 6899999874 6899997766
Q ss_pred Ceeeccc----ccc-------CCCceeEEE--ECCEEEEEeccCCcEEEEEeCCC
Q 040145 281 NWESMAV----GLR-------EGWTGSSVV--VYEHLFVVSELERMKLKVYDPST 322 (402)
Q Consensus 281 ~W~~~~~----~~~-------~~~~~~~~~--~~~~l~~~gg~~~~~~~~yd~~~ 322 (402)
+...-+. ..+ .....++.. .++++|++-|. ..|+||..+
T Consensus 147 ~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG~---~ywr~d~~~ 198 (225)
T 3oyo_A 147 QLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKGQ---NYVRIDFTP 198 (225)
T ss_dssp EEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEETT---EEEEEECCT
T ss_pred eecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEECC---EEEEEeCCc
Confidence 5443111 111 111222333 37999999775 799999983
No 245
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=92.55 E-value=6.7 Score=36.58 Aligned_cols=172 Identities=16% Similarity=0.153 Sum_probs=93.5
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCce---eec----CCCcccccceEEEE------ECCEEEEEcCCCCCCCCCC
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRW---TVM----NKMITARSFFASGV------IGGMIYVAGGSSADLFELD 222 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W---~~~----~~~~~~r~~~~~~~------~~~~iyv~GG~~~~~~~~~ 222 (402)
++++|++-|. .+|+|+-.+-.= +.+ +.+|. ... ++.. .++++|++-| +
T Consensus 107 ~g~~yfFkG~---------~yW~~~~~~~~~GYPk~I~~~fpGlp~-~ID-AA~~~~~~~~~~~~~yfFkG--------~ 167 (460)
T 1qhu_A 107 HTSVYLIKGD---------KVWVYTSEKNEKVYPKSLQDEFPGIPF-PLD-AAVECHRGECQDEGILFFQG--------N 167 (460)
T ss_dssp TTEEEEEETT---------EEEEECC-------CEEHHHHSTTCCS-SCC-EEEEECBBTBSSSEEEEEET--------T
T ss_pred CCcEEEEecc---------EEEEEeCCcccCCCCeEhhhccCCCCC-Cee-EEEECCccCCCCCeEEEEec--------c
Confidence 6899999775 688886432110 111 22332 111 2222 2678888876 3
Q ss_pred eeEEEcCCCCcEEEc--CCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeee------------ccc-
Q 040145 223 SAEVLDPVKGNWRTI--ASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES------------MAV- 287 (402)
Q Consensus 223 ~~~~yd~~t~~W~~~--~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~------------~~~- 287 (402)
..+.||..+++...- +.++. .-++...+|++|+|-|. ..+.||..+++-.. ++.
T Consensus 168 ~yw~yd~~~~~~~~~~w~gi~~---iDAA~~~~g~~YfFkG~--------~y~rfd~~~~~v~~gyPk~is~~w~~c~~~ 236 (460)
T 1qhu_A 168 RKWFWDLTTGTKKERSWPAVGN---CTSALRWLGRYYCFQGN--------QFLRFNPVSGEVPPGYPLDVRDYFLSCPGR 236 (460)
T ss_dssp EEEEEETTTTEEEEECCTTSCC---CSEEEEETTEEEEEETT--------EEEEECTTTCCCCTTCCEEHHHHTSCCTTC
T ss_pred cEEEEecccceeecccCCCCCc---cchheeeCCceEEEECC--------EEEEEcCccCcccCCCCcchhhcccCCCCC
Confidence 578999988765432 22332 23455568999999884 67888876553221 110
Q ss_pred c------------------ccCCCceeEEE-ECCEEEEEeccCCcEEEEEeCCCCceee--cCC--CCCCccccCCeEEE
Q 040145 288 G------------------LREGWTGSSVV-VYEHLFVVSELERMKLKVYDPSTDSWET--IEG--PPLPEQICKPFAVN 344 (402)
Q Consensus 288 ~------------------~~~~~~~~~~~-~~~~l~~~gg~~~~~~~~yd~~~~~W~~--~~~--~~~p~~~~~~~~~~ 344 (402)
. .+.....+... .+|++|.|-|. ..|++|...+.+.. |.. ..+|. .--++.
T Consensus 237 g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg~---~yWR~~~~~~~~~p~~Is~~WpglP~---~IDAAf 310 (460)
T 1qhu_A 237 GHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSGS---HYWRLDTNRDGWHSWPIAHQWPQGPS---TVDAAF 310 (460)
T ss_dssp CSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEETT---EEEECTTGGGCCCCEEGGGTCTTSCS---SCSEEE
T ss_pred CCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeCC---EEEEEecCCCCcCccchhhhccCCCC---CCcEEE
Confidence 0 00011222223 47899999775 68888876543221 211 02332 122444
Q ss_pred EeCCEEEEEecCceeeeEEEEeccc
Q 040145 345 ACDCRVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 345 ~~~~~i~v~GG~~~~~~~~v~~~~~ 369 (402)
..++++|++-|. .+|+|+.
T Consensus 311 ~~~~~~yfFkG~------~yw~f~~ 329 (460)
T 1qhu_A 311 SWEDKLYLIQDT------KVYVFLT 329 (460)
T ss_dssp EETTEEEEEETT------EEEEEEC
T ss_pred EECCeEEEEeCC------EEEEEeC
Confidence 558899999884 3555553
No 246
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=92.55 E-value=1.1 Score=41.29 Aligned_cols=143 Identities=8% Similarity=-0.009 Sum_probs=69.3
Q ss_pred EEEEeCccCCCCCCCceEEEEECCCCc---eeecC--CCc-ccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCC
Q 040145 159 LFVCGGMVSDVDCPLDLVLKYEMQKNR---WTVMN--KMI-TARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPV 230 (402)
Q Consensus 159 i~v~GG~~~~~~~~~~~~~~~d~~t~~---W~~~~--~~~-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~ 230 (402)
+++.|+.+ ..+.+||..++. +...+ .+. ....-..++.. ++.+++.|+. ...+.+||..
T Consensus 196 ~l~s~~~d-------g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~------dg~i~i~d~~ 262 (430)
T 2xyi_A 196 YLLSASDD-------HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD------DQKLMIWDTR 262 (430)
T ss_dssp EEEEECTT-------SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEET------TSEEEEEETT
T ss_pred eEEEEeCC-------CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeC------CCeEEEEECC
Confidence 77777652 268899988732 21111 111 11112233332 4566777665 4678899998
Q ss_pred CCc-EEEcCCCCCCCcceeEEEE--CC-EEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CC-E
Q 040145 231 KGN-WRTIASMGTNMASYDAAVL--DG-KLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YE-H 303 (402)
Q Consensus 231 t~~-W~~~~~~~~~~~~~~~~~~--~g-~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~-~ 303 (402)
+.. ...+..+.........+.+ ++ .+++.|+.+ ..+.+||..+.. ..+.........-..+.+ ++ .
T Consensus 263 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~d------g~v~vwd~~~~~-~~~~~~~~h~~~v~~i~~sp~~~~ 335 (430)
T 2xyi_A 263 NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD------KTVALWDLRNLK-LKLHSFESHKDEIFQVQWSPHNET 335 (430)
T ss_dssp CSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETT------SEEEEEETTCTT-SCSEEEECCSSCEEEEEECSSCTT
T ss_pred CCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCC------CeEEEEeCCCCC-CCeEEeecCCCCEEEEEECCCCCC
Confidence 652 1111111111122223333 34 377777753 368899987632 111110011111112233 33 5
Q ss_pred EEEEeccCCcEEEEEeCCC
Q 040145 304 LFVVSELERMKLKVYDPST 322 (402)
Q Consensus 304 l~~~gg~~~~~~~~yd~~~ 322 (402)
+++.|+. ...+.+||...
T Consensus 336 ~l~s~~~-d~~i~iwd~~~ 353 (430)
T 2xyi_A 336 ILASSGT-DRRLHVWDLSK 353 (430)
T ss_dssp EEEEEET-TSCCEEEEGGG
T ss_pred EEEEEeC-CCcEEEEeCCC
Confidence 6777665 45688888865
No 247
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=92.28 E-value=5.5 Score=34.96 Aligned_cols=183 Identities=9% Similarity=-0.072 Sum_probs=91.1
Q ss_pred ceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccccc
Q 040145 118 KIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARS 197 (402)
Q Consensus 118 ~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~ 197 (402)
...++++|..+..-..+ . . ........+|+.+++.....+ .....++++|..+++.+.+...+.
T Consensus 42 ~~~l~~~d~~~~~~~~l---~-------~-~~~~~~SpDg~~la~~~~~~~--~~~~~l~~~~~~~g~~~~l~~~~~--- 105 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI---E-------N-ATMPRISPDGKKIAFMRANEE--KKVSEIWVADLETLSSKKILEAKN--- 105 (347)
T ss_dssp EEEEEEEETTTCCEEEE---E-------S-CEEEEECTTSSEEEEEEEETT--TTEEEEEEEETTTTEEEEEEEESE---
T ss_pred cceEEEEeCCCCceEEc---c-------c-CCCeEECCCCCEEEEEEeccC--CCcceEEEEECCCCceEEEEcCCC---
Confidence 44678888887766555 1 1 122333335543333322111 124479999999887766543322
Q ss_pred ceEEEEE-CC-EEEEEcCCC-----------------CCC---CCCCeeEEEcCCCCcE-EEcCCCCCCCcceeEEEE-C
Q 040145 198 FFASGVI-GG-MIYVAGGSS-----------------ADL---FELDSAEVLDPVKGNW-RTIASMGTNMASYDAAVL-D 253 (402)
Q Consensus 198 ~~~~~~~-~~-~iyv~GG~~-----------------~~~---~~~~~~~~yd~~t~~W-~~~~~~~~~~~~~~~~~~-~ 253 (402)
....... ++ .|++..... +.+ .....++++|..++.. +.+.. + .....+.. +
T Consensus 106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~---~~~~~~~spd 181 (347)
T 2gop_A 106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P---RFSSGIWHRD 181 (347)
T ss_dssp EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E---TTCEEEEETT
T ss_pred ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C---CcccccCCCC
Confidence 2222222 44 454443210 000 0135688999998877 55544 2 22222233 5
Q ss_pred CEEEEEcccccCCc--c-CCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccC-------CcEEEEEeCCCC
Q 040145 254 GKLLVTEGWLWPFF--V-SPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELE-------RMKLKVYDPSTD 323 (402)
Q Consensus 254 g~ly~~gG~~~~~~--~-~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~-------~~~~~~yd~~~~ 323 (402)
| +++.+....... . ...++.+| ++++..+... .... ...-+|+.+++.+.. ...++.+| +.
T Consensus 182 g-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~---~~~~-~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~ 252 (347)
T 2gop_A 182 K-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK---VSFY-AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GK 252 (347)
T ss_dssp E-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE---ESEE-EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SS
T ss_pred e-EEEEEecccccccccccccEEEeC--CCceEEeccC---ccee-eECCCCCEEEEEEccccCCccccceEEEEC--CC
Confidence 6 655554321101 1 23678888 6666666542 1111 124466544443322 35799999 56
Q ss_pred ceeecC
Q 040145 324 SWETIE 329 (402)
Q Consensus 324 ~W~~~~ 329 (402)
++..+.
T Consensus 253 ~~~~l~ 258 (347)
T 2gop_A 253 EVMGIL 258 (347)
T ss_dssp CEEESS
T ss_pred ceEecc
Confidence 666654
No 248
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=91.95 E-value=5.7 Score=34.39 Aligned_cols=146 Identities=10% Similarity=0.092 Sum_probs=69.0
Q ss_pred CEEEEEeCccCCCCCCCceEEEEECCCCc-------eeecCCCcccccc-eEEEEE-C--CEEEEEcCCCCCCCCCCeeE
Q 040145 157 GTLFVCGGMVSDVDCPLDLVLKYEMQKNR-------WTVMNKMITARSF-FASGVI-G--GMIYVAGGSSADLFELDSAE 225 (402)
Q Consensus 157 ~~i~v~GG~~~~~~~~~~~~~~~d~~t~~-------W~~~~~~~~~r~~-~~~~~~-~--~~iyv~GG~~~~~~~~~~~~ 225 (402)
+.+++.|+.+ ..+.+||..++. |+.+..+...... ..++.. + +.+++.|+. ...+.
T Consensus 71 ~~~l~s~~~d-------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~------dg~v~ 137 (351)
T 3f3f_A 71 GRIIASASYD-------KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN------DGILR 137 (351)
T ss_dssp CSEEEEEETT-------SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET------TCEEE
T ss_pred CCEEEEEcCC-------CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC------CCcEE
Confidence 6777777763 268888887652 2332222211222 223332 2 556666664 45688
Q ss_pred EEcCCCCc----EEEc---C--CC-CCCC-cceeEEEE-----CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccc
Q 040145 226 VLDPVKGN----WRTI---A--SM-GTNM-ASYDAAVL-----DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGL 289 (402)
Q Consensus 226 ~yd~~t~~----W~~~---~--~~-~~~~-~~~~~~~~-----~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~ 289 (402)
+||..+.. |... . .. +... ........ ++.+++.|+.+ ..+..++...+....+....
T Consensus 138 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~ 211 (351)
T 3f3f_A 138 LYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALE------QAIIYQRGKDGKLHVAAKLP 211 (351)
T ss_dssp EEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETT------EEEEEEECTTSCEEEEEECC
T ss_pred EecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCC------CcEEEEccCCCceeeeeecC
Confidence 89987653 2211 1 11 1111 11112222 26666766643 13455555566554433211
Q ss_pred cCCCceeEEEE--CC----EEEEEeccCCcEEEEEeCCC
Q 040145 290 REGWTGSSVVV--YE----HLFVVSELERMKLKVYDPST 322 (402)
Q Consensus 290 ~~~~~~~~~~~--~~----~l~~~gg~~~~~~~~yd~~~ 322 (402)
.....-..+.+ ++ .+++.|+. ...+.+||..+
T Consensus 212 ~h~~~i~~~~~~p~~~~~~~~l~s~~~-dg~i~iwd~~~ 249 (351)
T 3f3f_A 212 GHKSLIRSISWAPSIGRWYQLIATGCK-DGRIRIFKITE 249 (351)
T ss_dssp CCCSCEEEEEECCCSSCSSEEEEEEET-TSCEEEEEEEE
T ss_pred CCCcceeEEEECCCCCCcceEEEEEcC-CCeEEEEeCCC
Confidence 11111112222 33 66777665 44677777754
No 249
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=91.83 E-value=8 Score=38.65 Aligned_cols=142 Identities=11% Similarity=0.065 Sum_probs=77.7
Q ss_pred EEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCC--CcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEc
Q 040145 152 SIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNK--MITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLD 228 (402)
Q Consensus 152 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~--~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd 228 (402)
....++.|++.+|.. .-+++||+.+++++.... +.......++.. .++.|++.. ...+.+||
T Consensus 478 ~~d~~g~lWi~~~t~-------~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt--------~~Gl~~~~ 542 (758)
T 3ott_A 478 IPDNEGNVWVLLYNN-------KGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF--------HGGVMRIN 542 (758)
T ss_dssp EECTTSCEEEEETTC-------SSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE--------TTEEEEEC
T ss_pred EEcCCCCEEEEccCC-------CCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe--------cCceEEEe
Confidence 333467899866652 258999999998887632 111111112222 256777643 23588999
Q ss_pred CCCCcEEEcC--CCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CCEE
Q 040145 229 PVKGNWRTIA--SMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEHL 304 (402)
Q Consensus 229 ~~t~~W~~~~--~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l 304 (402)
+.++.++... .++.. ...+...-+|.|++... +.+.+||+++.+...... +......++.. +|.|
T Consensus 543 ~~~~~~~~~~~~gl~~~-~i~~i~~~~g~lWi~t~--------~Gl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~G~l 611 (758)
T 3ott_A 543 PKDESQQSISFGSFSNN-EILSMTCVKNSIWVSTT--------NGLWIIDRKTMDARQQNM--TNKRFTSLLFDPKEDCV 611 (758)
T ss_dssp C--CCCCBCCCCC---C-CEEEEEEETTEEEEEES--------SCEEEEETTTCCEEEC----CCCCCSEEEEETTTTEE
T ss_pred cCCCceEEecccCCCcc-ceEEEEECCCCEEEECC--------CCeEEEcCCCceeEEecC--CCCceeeeEEECCCCcE
Confidence 9988876552 23321 12222334788877543 368999999988765432 22222223322 6777
Q ss_pred EEEeccCCcEEEEEeCCC
Q 040145 305 FVVSELERMKLKVYDPST 322 (402)
Q Consensus 305 ~~~gg~~~~~~~~yd~~~ 322 (402)
|+ ||.. .+..|||+.
T Consensus 612 ~f-G~~~--Gl~~f~p~~ 626 (758)
T 3ott_A 612 YL-GGAD--GFGISHSNL 626 (758)
T ss_dssp EE-ECBS--EEEEEEC--
T ss_pred EE-ecCC--ceEEEChhh
Confidence 64 6643 677888864
No 250
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=91.82 E-value=4.4 Score=32.89 Aligned_cols=142 Identities=16% Similarity=0.185 Sum_probs=76.1
Q ss_pred EEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCC--cEE--Ec----CCCCCCCcceeEEEE---CCEEEEEcccccCCcc
Q 040145 200 ASGVIGGMIYVAGGSSADLFELDSAEVLDPVKG--NWR--TI----ASMGTNMASYDAAVL---DGKLLVTEGWLWPFFV 268 (402)
Q Consensus 200 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~--~~----~~~~~~~~~~~~~~~---~g~ly~~gG~~~~~~~ 268 (402)
+++.+++++|++-|. .++.|+.... ... .+ +.+|. ...++.. ++++|++-|.
T Consensus 11 Ai~~~~g~~yfFkg~--------~~Wr~~~~~~~~~~~p~~Is~~w~glP~---~IDAa~~~~~~~~~yfFkG~------ 73 (195)
T 1itv_A 11 AIAEIGNQLYLFKDG--------KYWRFSEGRGSRPQGPFLIADKWPALPR---KLDSVFEEPLSKKLFFFSGR------ 73 (195)
T ss_dssp EEEEETTEEEEEETT--------EEEEECCSSSCCCEEEEEHHHHCTTSCS---SCSEEEECTTTCCEEEEETT------
T ss_pred EEEEeCCEEEEEECC--------EEEEEECCccccCCCcEEhhhccCCCCC---CccEEEEECCCCeEEEEeCC------
Confidence 345578999999763 4666666542 211 12 23443 2233332 6889999874
Q ss_pred CCcEEEEeCCCCCe-eeccc-cccC--CCceeEE-EECCEEEEEeccCCcEEEEEeCCCCceee-----cCC--CCCCcc
Q 040145 269 SPRGQVYDPSTDNW-ESMAV-GLRE--GWTGSSV-VVYEHLFVVSELERMKLKVYDPSTDSWET-----IEG--PPLPEQ 336 (402)
Q Consensus 269 ~~~~~~yd~~~~~W-~~~~~-~~~~--~~~~~~~-~~~~~l~~~gg~~~~~~~~yd~~~~~W~~-----~~~--~~~p~~ 336 (402)
..++|+..+..- ..+.. .+|. ....++. ..++++|+|-|. ..|+||..+++=.. +.. ..+|.
T Consensus 74 --~yw~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg~---~ywr~d~~~~~~~~gyPr~i~~~w~Gvp~- 147 (195)
T 1itv_A 74 --QVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGR---RLWRFDVKAQMVDPRSASEVDRMFPGVPL- 147 (195)
T ss_dssp --EEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEETT---EEEEEETTTTEECGGGCEEHHHHSTTSCS-
T ss_pred --EEEEEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeCC---EEEEEeCCcccccCCCccChhhcCCCCCC-
Confidence 577887543111 01111 1111 1122222 237899999664 79999987653110 100 01231
Q ss_pred ccCCeEEEEeCCEEEEEecCceeeeEEEEecccccc
Q 040145 337 ICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEK 372 (402)
Q Consensus 337 ~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~ 372 (402)
.. -++...+|.+|++-|. ..+.|++...
T Consensus 148 -~i-daa~~~~g~~Yffkg~------~y~~~~~~~~ 175 (195)
T 1itv_A 148 -DT-HDVFQFREKAYFCQDR------FYWRVSSRSE 175 (195)
T ss_dssp -SC-SEEEEETTEEEEEETT------EEEEEECCTT
T ss_pred -CC-CEEEEeCCeEEEEeCC------EEEEEECCcc
Confidence 12 2455567999999884 4677775443
No 251
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=91.67 E-value=4.8 Score=33.02 Aligned_cols=146 Identities=13% Similarity=0.118 Sum_probs=80.6
Q ss_pred CceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCcee--ec----CCCcccccceEEEEE--CCEEEEEcCCCCCC
Q 040145 147 GFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWT--VM----NKMITARSFFASGVI--GGMIYVAGGSSADL 218 (402)
Q Consensus 147 ~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~--~~----~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~ 218 (402)
.+.+++. ..|++|++=|. .+|+++.....+. .+ +.+|. ... ++... ++++|++-|.
T Consensus 25 ~fDAi~~-~~g~~y~Fkg~---------~~wr~~~~~~~~~p~~I~~~wp~Lp~-~iD-Aa~~~~~~~~iyfFkG~---- 88 (207)
T 1pex_A 25 SLDAITS-LRGETMIFKDR---------FFWRLHPQQVDAELFLTKSFWPELPN-RID-AAYEHPSHDLIFIFRGR---- 88 (207)
T ss_dssp CCSEEEE-ETTEEEEEETT---------EEEEECSSSSCCEEEEHHHHCTTSCS-SCC-EEEEETTTTEEEEEETT----
T ss_pred CEeEEEe-CCCcEEEEECC---------EEEEEeCCCcCCCceehhHhccCCCC-Ccc-EEEEeccCCcEEEEccC----
Confidence 3555554 48999999775 5777776543221 11 23332 111 22222 5899999763
Q ss_pred CCCCeeEEEcCCCCcE---EEcCC--CCCCCcceeEEEE---CCEEEEEcccccCCccCCcEEEEeCCCCCeee-----c
Q 040145 219 FELDSAEVLDPVKGNW---RTIAS--MGTNMASYDAAVL---DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES-----M 285 (402)
Q Consensus 219 ~~~~~~~~yd~~t~~W---~~~~~--~~~~~~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~-----~ 285 (402)
.+++|+..+-.- +.|.. +|.......+++. +|++|+|-|. ..++||..+++-.. +
T Consensus 89 ----~~w~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG~--------~ywr~d~~~~~~d~gyPr~i 156 (207)
T 1pex_A 89 ----KFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGN--------QVWRYDDTNHIMDKDYPRLI 156 (207)
T ss_dssp ----EEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEETT--------EEEEEETTTTEECSSCCCBH
T ss_pred ----EEEEEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeCC--------EEEEEeCcCccccCCCCccH
Confidence 466676432111 22322 3322123334443 5899999873 68999987643221 1
Q ss_pred cc---cccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCc
Q 040145 286 AV---GLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 286 ~~---~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
.. .++. ...++...+|++|.+-|. ..++||..++.
T Consensus 157 ~~~~~Gip~-~iDaAf~~~g~~YfFkg~---~y~rf~~~~~~ 194 (207)
T 1pex_A 157 EEDFPGIGD-KVDAVYEKNGYIYFFNGP---IQFEYSIWSNR 194 (207)
T ss_dssp HHHSTTSCS-CCSEEEEETTEEEEEETT---EEEEEETTTTE
T ss_pred HHcCCCCCC-CccEEEEcCCcEEEEECC---EEEEEeCCccE
Confidence 10 1121 122333569999999665 79999998764
No 252
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=91.56 E-value=7.8 Score=35.17 Aligned_cols=174 Identities=9% Similarity=-0.043 Sum_probs=93.0
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecC--CCccccc
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMN--KMITARS 197 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~--~~~~~r~ 197 (402)
.++++++.......+...... .-.+.++-..++.||+.-.. ...++++++....-+.+. .+..|
T Consensus 139 ~I~r~~~~g~~~~~~~~~~~~-----~p~glavd~~~g~lY~~d~~-------~~~I~~~~~dg~~~~~l~~~~l~~P-- 204 (386)
T 3v65_B 139 RILRANLNGSNVEEVVSTGLE-----SPGGLAVDWVHDKLYWTDSG-------TSRIEVANLDGAHRKVLLWQSLEKP-- 204 (386)
T ss_dssp EEEEEETTSCCEEEEECSSCS-----CCCCEEEETTTTEEEEEETT-------TTEEEECBTTSCSCEEEECSSCSCE--
T ss_pred cEEEEecCCCCcEEEEeCCCC-----CccEEEEEeCCCeEEEEcCC-------CCeEEEEeCCCCceEEeecCCCCCC--
Confidence 466677666554443221110 11344444347899987543 347888888755433221 22222
Q ss_pred ceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCccee-EEE--ECCEEEEEcccccCCccCCcE
Q 040145 198 FFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYD-AAV--LDGKLLVTEGWLWPFFVSPRG 272 (402)
Q Consensus 198 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~-~~~--~~g~ly~~gG~~~~~~~~~~~ 272 (402)
.++++- ++.||+.-... ...++++++....-+.+.. ....... .++ .++.||+.-.. .+.|
T Consensus 205 -~giavdp~~g~ly~td~~~-----~~~I~r~~~dG~~~~~~~~--~~~~~PnGlavd~~~~~lY~aD~~------~~~I 270 (386)
T 3v65_B 205 -RAIALHPMEGTIYWTDWGN-----TPRIEASSMDGSGRRIIAD--THLFWPNGLTIDYAGRRMYWVDAK------HHVI 270 (386)
T ss_dssp -EEEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCEEEEC--SSCSCEEEEEEEGGGTEEEEEETT------TTEE
T ss_pred -cEEEEEcCCCeEEEeccCC-----CCEEEEEeCCCCCcEEEEE--CCCCCeeeEEEeCCCCEEEEEECC------CCEE
Confidence 233443 67899875321 3678999887544333321 1111222 333 26899998543 3479
Q ss_pred EEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCC
Q 040145 273 QVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTD 323 (402)
Q Consensus 273 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~ 323 (402)
+++|+....-..+.. .....-...++.++.||+... ....|.++|..+.
T Consensus 271 ~~~d~dG~~~~~~~~-~~~~~P~giav~~~~ly~td~-~~~~V~~~~~~~G 319 (386)
T 3v65_B 271 ERANLDGSHRKAVIS-QGLPHPFAITVFEDSLYWTDW-HTKSINSANKFTG 319 (386)
T ss_dssp EEECTTSCSCEEEEC-SSCSSEEEEEEETTEEEEEET-TTTEEEEEETTTC
T ss_pred EEEeCCCCeeEEEEE-CCCCCceEEEEECCEEEEeeC-CCCeEEEEECCCC
Confidence 999986533222221 111112223457899998854 3678999996444
No 253
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=91.10 E-value=13 Score=36.96 Aligned_cols=253 Identities=10% Similarity=-0.039 Sum_probs=121.8
Q ss_pred CCeEEEEEEeCCCCceeEEEeecC---CCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEE
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLT---HYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYE 180 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~---~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d 180 (402)
+.++|.+..+.......+++.+.. ...+..+-....................+|+.++++..... .....++++|
T Consensus 118 G~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G--~e~~~i~v~d 195 (741)
T 1yr2_A 118 GASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGG--SDWRTVKFVG 195 (741)
T ss_dssp TTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETT--CSEEEEEEEE
T ss_pred CCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCC--CceEEEEEEE
Confidence 566776655444334556777765 56666643221100000012334455456665555433211 1124799999
Q ss_pred CCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCC--------CCCCCeeEEEcCCCCcE--EEcCCCCC-CCccee
Q 040145 181 MQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSAD--------LFELDSAEVLDPVKGNW--RTIASMGT-NMASYD 248 (402)
Q Consensus 181 ~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~--------~~~~~~~~~yd~~t~~W--~~~~~~~~-~~~~~~ 248 (402)
..+++..... .+... ....+.. +..|++.. .+.. ......++.++..++.- ..+-..+. +.....
T Consensus 196 l~tg~~~~~~-~~~~~-~~~~~wspD~~l~~~~-~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~ 272 (741)
T 1yr2_A 196 VADGKPLADE-LKWVK-FSGLAWLGNDALLYSR-FAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG 272 (741)
T ss_dssp TTTCCEEEEE-EEEEE-SCCCEESTTSEEEEEE-CCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred CCCCCCCCcc-CCCce-eccEEEECCCEEEEEE-ecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence 9999875431 11111 0122222 22344333 2111 01134577788766542 12211121 111222
Q ss_pred EE-EECCEEEEEcccccCCccCCcEEEEeCCCC--C-eeeccccccCCCceeEEEECCEEEEEeccC--CcEEEEEeCCC
Q 040145 249 AA-VLDGKLLVTEGWLWPFFVSPRGQVYDPSTD--N-WESMAVGLREGWTGSSVVVYEHLFVVSELE--RMKLKVYDPST 322 (402)
Q Consensus 249 ~~-~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~--~-W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~--~~~~~~yd~~~ 322 (402)
.. .-+|+..++....... ..+.++.+|..+. . |..+..... ........-++.||+....+ ...++.+|.++
T Consensus 273 ~~~SpDG~~l~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~ 350 (741)
T 1yr2_A 273 ASVSSDGRWVVITSSEGTD-PVNTVHVARVTNGKIGPVTALIPDLK-AQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSG 350 (741)
T ss_dssp EEECTTSCEEEEEEECTTC-SCCEEEEEEEETTEECCCEEEECSSS-SCEEEEEEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred EEECCCCCEEEEEEEccCC-CcceEEEEECCCCCCcccEEecCCCC-ceEEEEeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 22 2267544443322211 2357899999877 6 887764222 22222223466777765432 45799999987
Q ss_pred --CceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEeccc
Q 040145 323 --DSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 323 --~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~ 369 (402)
..|..+- +-.. .....+...++.|++....+. ...++.++.
T Consensus 351 ~~~~~~~l~--~~~~--~~l~~~~~~~~~lv~~~~~dg--~~~l~~~~~ 393 (741)
T 1yr2_A 351 STPRFDTVV--PESK--DNLESVGIAGNRLFASYIHDA--KSQVLAFDL 393 (741)
T ss_dssp SSCEEEEEE--CCCS--SEEEEEEEEBTEEEEEEEETT--EEEEEEEET
T ss_pred CccccEEEe--cCCC--CeEEEEEEECCEEEEEEEECC--EEEEEEEeC
Confidence 5788875 2221 111233445778777765332 234566553
No 254
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=91.08 E-value=8.2 Score=34.54 Aligned_cols=177 Identities=5% Similarity=-0.028 Sum_probs=92.0
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccc-
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSF- 198 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~- 198 (402)
.+.++|+.+.+-....... ..-..+++..++++++.++. +.+.+++..++..............
T Consensus 158 ~i~iwd~~~~~~~~~~~~~-------~~V~~v~fspdg~~l~s~s~--------~~~~~~~~~~~~~~~~~~~~~~~~~v 222 (365)
T 4h5i_A 158 IMRIIDPSDLTEKFEIETR-------GEVKDLHFSTDGKVVAYITG--------SSLEVISTVTGSCIARKTDFDKNWSL 222 (365)
T ss_dssp EEEEEETTTTEEEEEEECS-------SCCCEEEECTTSSEEEEECS--------SCEEEEETTTCCEEEEECCCCTTEEE
T ss_pred EEEEeECCCCcEEEEeCCC-------CceEEEEEccCCceEEeccc--------eeEEEEEeccCcceeeeecCCCCCCE
Confidence 4778888877654322111 11234445457777777653 2577888887764432222111111
Q ss_pred eEEE-EECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcC--CCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEE
Q 040145 199 FASG-VIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIA--SMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQ 273 (402)
Q Consensus 199 ~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~ 273 (402)
..++ .-+++.++.++.++.. ...+..+|.......... .+........++.+ +|++++.|+.+ ..+.
T Consensus 223 ~~v~fspdg~~l~~~s~d~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D------~~V~ 294 (365)
T 4h5i_A 223 SKINFIADDTVLIAASLKKGK--GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASND------NSIA 294 (365)
T ss_dssp EEEEEEETTEEEEEEEESSSC--CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT------SCEE
T ss_pred EEEEEcCCCCEEEEEecCCcc--eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCC------CEEE
Confidence 1222 2367777777654432 234566776665543321 11111122222223 78888888764 3689
Q ss_pred EEeCCCCCeeeccccccCCCcee--EEEE--CCEEEEEeccCCcEEEEEeCCCC
Q 040145 274 VYDPSTDNWESMAVGLREGWTGS--SVVV--YEHLFVVSELERMKLKVYDPSTD 323 (402)
Q Consensus 274 ~yd~~~~~W~~~~~~~~~~~~~~--~~~~--~~~l~~~gg~~~~~~~~yd~~~~ 323 (402)
+||..+.+- +.. ........ .+.+ +|++++.|+. ...|.++|...+
T Consensus 295 iwd~~~~~~--~~~-~~~gH~~~V~~v~fSpdg~~laS~S~-D~tvrvw~ip~~ 344 (365)
T 4h5i_A 295 LVKLKDLSM--SKI-FKQAHSFAITEVTISPDSTYVASVSA-ANTIHIIKLPLN 344 (365)
T ss_dssp EEETTTTEE--EEE-ETTSSSSCEEEEEECTTSCEEEEEET-TSEEEEEECCTT
T ss_pred EEECCCCcE--EEE-ecCcccCCEEEEEECCCCCEEEEEeC-CCeEEEEEcCCC
Confidence 999987642 221 11111111 2333 6777777665 567888887543
No 255
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=91.06 E-value=2.2 Score=35.73 Aligned_cols=141 Identities=8% Similarity=0.073 Sum_probs=75.8
Q ss_pred cCCEEEEEeCccCCCCCCCceEEEEECC---------------CCceeecCCCcc--cccceEEEEECCEEEEEcCCCCC
Q 040145 155 REGTLFVCGGMVSDVDCPLDLVLKYEMQ---------------KNRWTVMNKMIT--ARSFFASGVIGGMIYVAGGSSAD 217 (402)
Q Consensus 155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~---------------t~~W~~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~~ 217 (402)
..+++|++-|. .+|+++.. +..|..||.... .....+....++++|++-|.
T Consensus 14 ~~ge~yfFkg~---------~~wr~~~~~~~~~~~~~~~P~~I~~~W~~Lp~~~f~p~~iDaaf~~~~g~~~fFKg~--- 81 (227)
T 3lp9_A 14 KNNEAYFFIND---------KYVLLDYAPGSSRDKVLYGPTPVRDGFKSLNQTIFGSYGIDCSFDTENNEAFIFYEN--- 81 (227)
T ss_dssp STTEEEEEETT---------EEEEEECCTTSSCCEEEEEEEEHHHHSGGGTTSHHHHHCCSEEEECSTTEEEEEETT---
T ss_pred CCCeEEEEECC---------EEEEEeCCCCCccccccCCceEHhhcCCcCCcccCCCCCceEEEECCCCEEEEEeCC---
Confidence 46899999765 46666552 223555543221 12222222468899999873
Q ss_pred CCCCCeeEEEc--CCC-C-cE----EEc----CCCCCC--CcceeEEEE---CCEEEEEcccccCCccCCcEEEEeCCCC
Q 040145 218 LFELDSAEVLD--PVK-G-NW----RTI----ASMGTN--MASYDAAVL---DGKLLVTEGWLWPFFVSPRGQVYDPSTD 280 (402)
Q Consensus 218 ~~~~~~~~~yd--~~t-~-~W----~~~----~~~~~~--~~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~yd~~~~ 280 (402)
.+++|+ +.+ + .- ..+ +.+|.. .....++.. ++++|+|-|. ..++||..++
T Consensus 82 -----~~Wr~~~~~~~~~~~~~~gP~~I~~~w~gLp~~~~p~~IDAA~~~~~~~k~yfFkG~--------~yw~~d~~~~ 148 (227)
T 3lp9_A 82 -----FCALIDYAPHSKKDKIILGPKKIADVFPFFEGTVFESGIDAAYRSTRGKEVYLFKGD--------QYARIDYGSN 148 (227)
T ss_dssp -----EEEEEECCTTTCCCEEEEEEEEHHHHSGGGTTSTTTTCCSEEEECSSTTEEEEEETT--------EEEEEETTTT
T ss_pred -----EEEEEeCCCCccccccccCceEHhhhcCCCCCccCCCcccEEEEECCCCEEEEEECC--------EEEEEeCCCc
Confidence 567777 321 1 10 011 123311 112233333 6899999874 6899998754
Q ss_pred Ceee-----ccccccC-------CCceeEEE--ECCEEEEEeccCCcEEEEEeCCCC
Q 040145 281 NWES-----MAVGLRE-------GWTGSSVV--VYEHLFVVSELERMKLKVYDPSTD 323 (402)
Q Consensus 281 ~W~~-----~~~~~~~-------~~~~~~~~--~~~~l~~~gg~~~~~~~~yd~~~~ 323 (402)
+-.. +....|. ....++.. .++++|.+-|. ..|+||..++
T Consensus 149 ~~~~gyPk~i~~g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg~---~Ywr~d~~~~ 202 (227)
T 3lp9_A 149 SMVNKEIKSISSGYPCFRNTIFESGADAAFASHKTNEVYFFKDD---HYARVKVTPX 202 (227)
T ss_dssp EESSSSCEEHHHHCGGGTTSGGGGCCSEEEECSSTTEEEEEETT---EEEEEECCSS
T ss_pred cccCCCCeEHHHCCCCccccccCCCccEEEEcCCCceEEEEECC---EEEEEECCcc
Confidence 3221 1111121 11222222 36899999775 7999998876
No 256
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=91.03 E-value=9.6 Score=35.22 Aligned_cols=118 Identities=8% Similarity=-0.073 Sum_probs=63.3
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCC--CCCCCceEEEEEC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSD--VDCPLDLVLKYEM 181 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~--~~~~~~~~~~~d~ 181 (402)
...+|+...........+.++|+.+.+-..--+.. . .. +.+....+..+|+.--.... .....+.+.++|+
T Consensus 84 ~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG--~----~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 84 ARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGG--F----LP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC--S----SC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECC--C----CC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 56788886322111167999999988754322222 1 12 44444445578887421000 0002457999999
Q ss_pred CCCceee-cCCCc-cc-----ccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcE
Q 040145 182 QKNRWTV-MNKMI-TA-----RSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNW 234 (402)
Q Consensus 182 ~t~~W~~-~~~~~-~~-----r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 234 (402)
.|++-.. ++ ++ .+ ...+.+++. +..+|+..-. ..+.+.++|..+++-
T Consensus 157 ~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~-----~~~~VsVID~~t~kv 212 (426)
T 3c75_H 157 VTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKNLLFYQFS-----PAPAVGVVDLEGKTF 212 (426)
T ss_dssp TTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSEEEEEECS-----SSCEEEEEETTTTEE
T ss_pred CCCcEEEEEE-CCCccccccCCCcceEEEcCCCCEEEEEecC-----CCCeEEEEECCCCeE
Confidence 9986432 21 11 11 122333332 4578887421 146789999998764
No 257
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=91.00 E-value=0.094 Score=51.08 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=32.0
Q ss_pred CCCCcHHHHHHhhccC-ccchhhhhhhccHhHHHhh
Q 040145 53 IPGLPDDVALNCLLRL-PVESHAACRAVCKRWHLLL 87 (402)
Q Consensus 53 ~~~Lp~dl~~~il~rl-p~~~l~~~~~v~k~W~~l~ 87 (402)
.+.||||++..||.+| |.++..++..|||+|+.+.
T Consensus 13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~ 48 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID 48 (592)
T ss_dssp CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence 3579999999999999 8999999999999998873
No 258
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=90.99 E-value=7.8 Score=34.14 Aligned_cols=149 Identities=7% Similarity=0.061 Sum_probs=71.1
Q ss_pred eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceee-cCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEE
Q 040145 149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTV-MNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEV 226 (402)
Q Consensus 149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~-~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~ 226 (402)
.++++..++.+++.|+.+ ..+.+||..+++... +.. ....-.+++.. +++.++.|+. -..+.+
T Consensus 80 ~~~~~~~~~~~l~s~s~D-------~~v~lwd~~~~~~~~~~~~--h~~~v~~v~~sp~~~~l~s~~~------d~~i~~ 144 (343)
T 2xzm_R 80 SDLALSQENCFAISSSWD-------KTLRLWDLRTGTTYKRFVG--HQSEVYSVAFSPDNRQILSAGA------EREIKL 144 (343)
T ss_dssp EEEEECSSTTEEEEEETT-------SEEEEEETTSSCEEEEEEC--CCSCEEEEEECSSTTEEEEEET------TSCEEE
T ss_pred EEEEECCCCCEEEEEcCC-------CcEEEEECCCCcEEEEEcC--CCCcEEEEEECCCCCEEEEEcC------CCEEEE
Confidence 334444466677777752 278999998875322 111 11111222322 4555666665 345778
Q ss_pred EcCCCCcEEEcCCCCCCCcceeEEEE--CC----------EEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCc
Q 040145 227 LDPVKGNWRTIASMGTNMASYDAAVL--DG----------KLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWT 294 (402)
Q Consensus 227 yd~~t~~W~~~~~~~~~~~~~~~~~~--~g----------~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~ 294 (402)
||.....-...............+.+ ++ .+++.|+.+ ..+..||.....-..+.. .. ...
T Consensus 145 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~-h~-~~v 216 (343)
T 2xzm_R 145 WNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD------GRLKVWNTNFQIRYTFKA-HE-SNV 216 (343)
T ss_dssp EESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETT------SEEEEEETTTEEEEEEEC-CS-SCE
T ss_pred EeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCC------CEEEEEcCCCceeEEEcC-cc-ccc
Confidence 88764433222222111111222222 11 455556543 367788843221111111 11 111
Q ss_pred eeEEEE--CCEEEEEeccCCcEEEEEeCCC
Q 040145 295 GSSVVV--YEHLFVVSELERMKLKVYDPST 322 (402)
Q Consensus 295 ~~~~~~--~~~l~~~gg~~~~~~~~yd~~~ 322 (402)
..+.+ +++.++.|+. ...+.+||..+
T Consensus 217 -~~~~~s~~g~~l~sgs~-dg~v~iwd~~~ 244 (343)
T 2xzm_R 217 -NHLSISPNGKYIATGGK-DKKLLIWDILN 244 (343)
T ss_dssp -EEEEECTTSSEEEEEET-TCEEEEEESSC
T ss_pred -eEEEECCCCCEEEEEcC-CCeEEEEECCC
Confidence 11222 6777777765 45788999843
No 259
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=90.94 E-value=13 Score=36.43 Aligned_cols=200 Identities=11% Similarity=0.056 Sum_probs=113.5
Q ss_pred eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce
Q 040145 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF 199 (402)
Q Consensus 120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~ 199 (402)
.+..+|+....-..+.+++. .....+...-..++.||+..-. ...++++++.....+.+-.... ....
T Consensus 16 ~I~~i~l~~~~~~~~~~~~~----~~~~~~l~~d~~~~~lywtD~~-------~~~I~r~~~~g~~~~~v~~~g~-~~P~ 83 (628)
T 4a0p_A 16 DIRRISLETNNNNVAIPLTG----VKEASALDFDVTDNRIYWTDIS-------LKTISRAFMNGSALEHVVEFGL-DYPE 83 (628)
T ss_dssp EEEEEESSCTTCEEECCCCS----CSCEEEEEEETTTTEEEEEETT-------TTEEEEEETTSCSCEEEECSSC-SCCC
T ss_pred cEEEEECCCCCcceEEEcCC----CCceEEEEEECCCCEEEEEECC-------CCeEEEEECCCCCcEEEEeCCC-CCcc
Confidence 36677777654433323321 1122344444457899998543 3478899987665544322111 1223
Q ss_pred EEEE--ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEc--CCCCCCCcceeEEEE--CCEEEEEc-ccccCCccCCcE
Q 040145 200 ASGV--IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTI--ASMGTNMASYDAAVL--DGKLLVTE-GWLWPFFVSPRG 272 (402)
Q Consensus 200 ~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~--~~~~~~~~~~~~~~~--~g~ly~~g-G~~~~~~~~~~~ 272 (402)
++++ .+++||+.-.. ...++++++....=+.+ ..+..| .+.++- +|.||+.- |. ...+
T Consensus 84 GlAvD~~~~~LY~tD~~------~~~I~v~~~dG~~~~~l~~~~l~~P---~~iavdp~~G~lY~tD~g~------~~~I 148 (628)
T 4a0p_A 84 GMAVDWLGKNLYWADTG------TNRIEVSKLDGQHRQVLVWKDLDSP---RALALDPAEGFMYWTEWGG------KPKI 148 (628)
T ss_dssp EEEEETTTTEEEEEETT------TTEEEEEETTSTTCEEEECSSCCCE---EEEEEETTTTEEEEEECSS------SCEE
T ss_pred eEEEEeCCCEEEEEECC------CCEEEEEecCCCcEEEEEeCCCCCc---ccEEEccCCCeEEEeCCCC------CCEE
Confidence 4454 47899998543 56789998865443333 222222 223333 68999975 21 2478
Q ss_pred EEEeCCCCCeeeccccccCCCceeEEEE---CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCE
Q 040145 273 QVYDPSTDNWESMAVGLREGWTGSSVVV---YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCR 349 (402)
Q Consensus 273 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~ 349 (402)
+++++....-+.+..... +- ..+.+ +++||+.-.. .+.|+++|++...=+.+.. .+ ...+++++.++.
T Consensus 149 ~r~~~dG~~~~~l~~~~~--~P-~GlalD~~~~~LY~aD~~-~~~I~~~d~dG~~~~v~~~-~l----~~P~glav~~~~ 219 (628)
T 4a0p_A 149 DRAAMDGSERTTLVPNVG--RA-NGLTIDYAKRRLYWTDLD-TNLIESSNMLGLNREVIAD-DL----PHPFGLTQYQDY 219 (628)
T ss_dssp EEEETTSCSCEEEECSCS--SE-EEEEEETTTTEEEEEETT-TTEEEEEETTSCSCEEEEE-CC----SCEEEEEEETTE
T ss_pred EEEeCCCCceEEEECCCC--Cc-ceEEEccccCEEEEEECC-CCEEEEEcCCCCceEEeec-cC----CCceEEEEECCE
Confidence 899887655444432111 11 12333 6889988553 6789999997643233221 12 345688888999
Q ss_pred EEEEec
Q 040145 350 VYVVGR 355 (402)
Q Consensus 350 i~v~GG 355 (402)
||+.--
T Consensus 220 ly~tD~ 225 (628)
T 4a0p_A 220 IYWTDW 225 (628)
T ss_dssp EEEEET
T ss_pred EEEecC
Confidence 999864
No 260
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=90.92 E-value=5.6 Score=32.31 Aligned_cols=145 Identities=12% Similarity=0.102 Sum_probs=79.7
Q ss_pred ceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCC--cee--ec----CCCcccccceEEEEE--CCEEEEEcCCCCC
Q 040145 148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKN--RWT--VM----NKMITARSFFASGVI--GGMIYVAGGSSAD 217 (402)
Q Consensus 148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~--~W~--~~----~~~~~~r~~~~~~~~--~~~iyv~GG~~~~ 217 (402)
+.+++. ..|++|++=|. .+|+++.... ... .+ +.+|.. .. ++... ++++|++-|.
T Consensus 9 fDAi~~-~~g~~yfFkg~---------~~Wr~~~~~~~~~~~p~~Is~~w~glP~~-ID-Aa~~~~~~~~~yfFkG~--- 73 (195)
T 1itv_A 9 FDAIAE-IGNQLYLFKDG---------KYWRFSEGRGSRPQGPFLIADKWPALPRK-LD-SVFEEPLSKKLFFFSGR--- 73 (195)
T ss_dssp CSEEEE-ETTEEEEEETT---------EEEEECCSSSCCCEEEEEHHHHCTTSCSS-CS-EEEECTTTCCEEEEETT---
T ss_pred CCEEEE-eCCEEEEEECC---------EEEEEECCccccCCCcEEhhhccCCCCCC-cc-EEEEECCCCeEEEEeCC---
Confidence 444444 48999999775 6888877542 111 11 233321 11 22222 5789998773
Q ss_pred CCCCCeeEEEcCCCCcE-EEcC--CCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeee-----ccc
Q 040145 218 LFELDSAEVLDPVKGNW-RTIA--SMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES-----MAV 287 (402)
Q Consensus 218 ~~~~~~~~~yd~~t~~W-~~~~--~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~-----~~~ 287 (402)
..++|+..+..- +.+. .+|.......+++. +|++|++-|. ..+.||..+++-.. +..
T Consensus 74 -----~yw~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg~--------~ywr~d~~~~~~~~gyPr~i~~ 140 (195)
T 1itv_A 74 -----QVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGR--------RLWRFDVKAQMVDPRSASEVDR 140 (195)
T ss_dssp -----EEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEETT--------EEEEEETTTTEECGGGCEEHHH
T ss_pred -----EEEEEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeCC--------EEEEEeCCcccccCCCccChhh
Confidence 467776542111 1122 22322123334433 7899999773 67999987654221 111
Q ss_pred ---cccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCc
Q 040145 288 ---GLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 288 ---~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
..|. ...++...+|.+|.+-|. ..+.||..+..
T Consensus 141 ~w~Gvp~-~idaa~~~~g~~Yffkg~---~y~~~~~~~~~ 176 (195)
T 1itv_A 141 MFPGVPL-DTHDVFQFREKAYFCQDR---FYWRVSSRSEL 176 (195)
T ss_dssp HSTTSCS-SCSEEEEETTEEEEEETT---EEEEEECCTTC
T ss_pred cCCCCCC-CCCEEEEeCCeEEEEeCC---EEEEEECCccE
Confidence 1121 122334568999999775 79999997764
No 261
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=90.88 E-value=8.3 Score=34.27 Aligned_cols=180 Identities=9% Similarity=0.008 Sum_probs=83.1
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEE
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWR 235 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 235 (402)
++.+.+.|+.+ ..+.+||..+++-... +...-.-.++....+.+++.. ...+.+||..+.. +
T Consensus 70 ~~~~~~~~~~d-------~~v~iWd~~~~~~~~~--~~~~~~v~~v~~~~~~~~~~~--------~~~i~i~d~~~~~-~ 131 (355)
T 3vu4_A 70 TNYVAFVTGVK-------EVVHIWDDVKKQDVSR--IKVDAPVKDLFLSREFIVVSY--------GDVISVFKFGNPW-K 131 (355)
T ss_dssp SSEEEEECSST-------TEEEEEETTTTEEEEE--EECSSCEEEEEECSSEEEEEE--------TTEEEEEESSTTC-C
T ss_pred CCEEEEEECCc-------cEEEEEECCCCcEEEE--EECCCceEEEEEcCCEEEEEE--------cCEEEEEECCCCc-e
Confidence 44565666642 2799999988864321 111111122333345555543 3468889987751 1
Q ss_pred EcCCCCCCCcceeEEEECCEEEEE-cccccCCccCCcEEEEeCCCCC-eee-------------ccccccCCCcee-EEE
Q 040145 236 TIASMGTNMASYDAAVLDGKLLVT-EGWLWPFFVSPRGQVYDPSTDN-WES-------------MAVGLREGWTGS-SVV 299 (402)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~g~ly~~-gG~~~~~~~~~~~~~yd~~~~~-W~~-------------~~~~~~~~~~~~-~~~ 299 (402)
.+..+..+ .. ..+...+.+.+. |+.. ..+..||..++. +.. +.. ........ ++.
T Consensus 132 ~~~~~~~~-~~-~~~~s~~~la~~sg~~~------g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~-~~~h~~~v~~~~ 202 (355)
T 3vu4_A 132 RITDDIRF-GG-VCEFSNGLLVYSNEFNL------GQIHITKLQSSGSATTQDQGVQQKAILGKGVL-IKAHTNPIKMVR 202 (355)
T ss_dssp BSSCCEEE-EE-EEEEETTEEEEEESSCT------TCEEEEECCC------------------CCEE-ECCCSSCEEEEE
T ss_pred eeEEeccC-Cc-eEEEEccEEEEeCCCcC------cEEEEEECCCCCccccccccccccccCcccEE-EEccCCceEEEE
Confidence 11111111 11 111223333333 3332 368889987643 111 111 11111111 122
Q ss_pred E--CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCC-ccccCCeEEE-EeCCEEEEEecCceeeeEEEEec
Q 040145 300 V--YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLP-EQICKPFAVN-ACDCRVYVVGRNLHVAVGHITRL 367 (402)
Q Consensus 300 ~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p-~~~~~~~~~~-~~~~~i~v~GG~~~~~~~~v~~~ 367 (402)
+ ++++++.|+.++..+.+||..+.+-...- ... .. ..-.+++ ..++++++.|+.++. ..+|.+
T Consensus 203 ~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~--~~g~h~-~~v~~~~~s~~~~~l~s~s~d~~--v~iw~~ 269 (355)
T 3vu4_A 203 LNRKSDMVATCSQDGTIIRVFKTEDGVLVREF--RRGLDR-ADVVDMKWSTDGSKLAVVSDKWT--LHVFEI 269 (355)
T ss_dssp ECTTSSEEEEEETTCSEEEEEETTTCCEEEEE--ECTTCC-SCEEEEEECTTSCEEEEEETTCE--EEEEES
T ss_pred ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE--EcCCCC-CcEEEEEECCCCCEEEEEECCCE--EEEEEc
Confidence 3 67777777764434999999876432211 100 11 1112232 346788888876543 334444
No 262
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=90.69 E-value=8.2 Score=33.85 Aligned_cols=188 Identities=10% Similarity=-0.014 Sum_probs=99.1
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCC----CcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEE
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTH----YCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKY 179 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~----~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~ 179 (402)
++.||+... ....++++|+.. .....+..... ..-.+.++-..++.||+.-.. ...+.++
T Consensus 41 ~~~ly~~D~----~~~~I~~~~~~g~~~~~~~~~~~~~~~-----~~p~glavd~~~~~ly~~d~~-------~~~I~~~ 104 (316)
T 1ijq_A 41 SNRIYWSDL----SQRMICSTQLDRAHGVSSYDTVISRDI-----QAPDGLAVDWIHSNIYWTDSV-------LGTVSVA 104 (316)
T ss_dssp TTEEEEEET----TTTEEEEEEC--------CEEEECSSC-----SCCCEEEEETTTTEEEEEETT-------TTEEEEE
T ss_pred CCEEEEEEC----CCCcEEEEECCCCCCCcccEEEEeCCC-----CCcCEEEEeecCCeEEEEECC-------CCEEEEE
Confidence 567777752 234577888765 22222211110 022344443347899998543 3478999
Q ss_pred ECCCCceeecC--CCcccccceEEEE--ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeE-EEE--
Q 040145 180 EMQKNRWTVMN--KMITARSFFASGV--IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDA-AVL-- 252 (402)
Q Consensus 180 d~~t~~W~~~~--~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~-~~~-- 252 (402)
|+....-+.+- .+..| ..+++ .++.||+.... . ...++++++....-+.+... ....... ++-
T Consensus 105 ~~~g~~~~~~~~~~~~~P---~~iavdp~~g~ly~~d~~----~-~~~I~~~~~dG~~~~~~~~~--~~~~P~gla~d~~ 174 (316)
T 1ijq_A 105 DTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWG----T-PAKIKKGGLNGVDIYSLVTE--NIQWPNGITLDLL 174 (316)
T ss_dssp ETTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEECS----S-SCEEEEEETTSCCEEEEECS--SCSCEEEEEEETT
T ss_pred eCCCCceEEEEECCCCCc---ceEEeCCCCCEEEEEccC----C-CCeEEEEcCCCCCeEEEEEC--CCCCceEEEEecc
Confidence 98765433321 22222 23444 36899988532 0 35789998865443333211 1122223 332
Q ss_pred CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccC-CCceeEEEECCEEEEEeccCCcEEEEEeCCCCc
Q 040145 253 DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLRE-GWTGSSVVVYEHLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 253 ~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
+++||+.-.. .+.++++|+....-+.+...... ......++.++.+|+... ....|.++|+.+.+
T Consensus 175 ~~~lY~~D~~------~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~-~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 175 SGRLYWVDSK------LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDI-INEAIFSANRLTGS 240 (316)
T ss_dssp TTEEEEEETT------TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEET-TTTEEEEEETTTCC
T ss_pred CCEEEEEECC------CCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEEEC-CCCeEEEEeCCCCc
Confidence 6789997543 34799999875433333221111 111122456899998764 36789999986554
No 263
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=90.64 E-value=13 Score=35.99 Aligned_cols=113 Identities=21% Similarity=0.321 Sum_probs=67.6
Q ss_pred EEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCCCC---c---ceeEEEECCEEEEEcccccCCccCCc
Q 040145 200 ASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGTNM---A---SYDAAVLDGKLLVTEGWLWPFFVSPR 271 (402)
Q Consensus 200 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~---~---~~~~~~~~g~ly~~gG~~~~~~~~~~ 271 (402)
+.++.++++|+.... ..++.+|.+|++ |+.-...+... + ....++.+++||+... ...
T Consensus 63 ~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~-------dg~ 128 (582)
T 1flg_A 63 QAIVSDGVIYVTASY-------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-------DAS 128 (582)
T ss_dssp CCEEETTEEEEEETT-------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-------TTE
T ss_pred ccEEECCEEEEEcCC-------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC-------CCE
Confidence 345679999998763 348999998875 88654332211 0 1233567899988532 136
Q ss_pred EEEEeCCCCC--eeeccccccCC--CceeEEEECC------EEEEEecc-----CCcEEEEEeCCCC--ceee
Q 040145 272 GQVYDPSTDN--WESMAVGLREG--WTGSSVVVYE------HLFVVSEL-----ERMKLKVYDPSTD--SWET 327 (402)
Q Consensus 272 ~~~yd~~~~~--W~~~~~~~~~~--~~~~~~~~~~------~l~~~gg~-----~~~~~~~yd~~~~--~W~~ 327 (402)
++++|.++++ |+.-....... .....++.++ .+|+ |.. ....++.||.++. .|+.
T Consensus 129 l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~e~~~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 129 VVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGDEFGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp EEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEE-CCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred EEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEE-eccccccCCCCEEEEEECCCCCEEeec
Confidence 8999998875 87532211111 1122245555 5654 332 1457999999876 4864
No 264
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=90.49 E-value=8.7 Score=33.83 Aligned_cols=172 Identities=10% Similarity=0.041 Sum_probs=77.6
Q ss_pred eEEEeecCCCcEE-eCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccc
Q 040145 120 QWQVLDLTHYCWH-TIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSF 198 (402)
Q Consensus 120 ~~~~~d~~~~~W~-~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~ 198 (402)
.+.+||..+.+.. .+..-. ....++.+..++..++.|+.+ ..+.+||.....-............
T Consensus 99 ~v~lwd~~~~~~~~~~~~h~-------~~v~~v~~sp~~~~l~s~~~d-------~~i~~wd~~~~~~~~~~~~~~~~~~ 164 (343)
T 2xzm_R 99 TLRLWDLRTGTTYKRFVGHQ-------SEVYSVAFSPDNRQILSAGAE-------REIKLWNILGECKFSSAEKENHSDW 164 (343)
T ss_dssp EEEEEETTSSCEEEEEECCC-------SCEEEEEECSSTTEEEEEETT-------SCEEEEESSSCEEEECCTTTSCSSC
T ss_pred cEEEEECCCCcEEEEEcCCC-------CcEEEEEECCCCCEEEEEcCC-------CEEEEEeccCCceeeeecccCCCce
Confidence 3778888776532 221111 223344444466666777652 2688888864432222211111111
Q ss_pred -eEEEEEC-----------CEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEccccc
Q 040145 199 -FASGVIG-----------GMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLW 264 (402)
Q Consensus 199 -~~~~~~~-----------~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~ 264 (402)
.++.... +.+++.|+. -..+.+||.....-..+ .........+.+ +|+.++.|+.+
T Consensus 165 v~~~~~~~~~~~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~---~~h~~~v~~~~~s~~g~~l~sgs~d- 234 (343)
T 2xzm_R 165 VSCVRYSPIMKSANKVQPFAPYFASVGW------DGRLKVWNTNFQIRYTF---KAHESNVNHLSISPNGKYIATGGKD- 234 (343)
T ss_dssp EEEEEECCCCCSCSCCCSSCCEEEEEET------TSEEEEEETTTEEEEEE---ECCSSCEEEEEECTTSSEEEEEETT-
T ss_pred eeeeeeccccccccccCCCCCEEEEEcC------CCEEEEEcCCCceeEEE---cCccccceEEEECCCCCEEEEEcCC-
Confidence 1112111 145566665 34677888432211111 111111222222 67777777753
Q ss_pred CCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCc
Q 040145 265 PFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 265 ~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
..+..||+.+..-. ... ......-..+.+ ++.++. +|. ...+.+||..+..
T Consensus 235 -----g~v~iwd~~~~~~~-~~~-~~~~~~v~~v~~sp~~~~la-~~~-d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 235 -----KKLLIWDILNLTYP-QRE-FDAGSTINQIAFNPKLQWVA-VGT-DQGVKIFNLMTQS 287 (343)
T ss_dssp -----CEEEEEESSCCSSC-SEE-EECSSCEEEEEECSSSCEEE-EEE-SSCEEEEESSSCC
T ss_pred -----CeEEEEECCCCccc-cee-ecCCCcEEEEEECCCCCEEE-EEC-CCCEEEEEeCCCC
Confidence 36888998432211 110 111111112222 455544 444 3358888887643
No 265
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=90.41 E-value=11 Score=34.87 Aligned_cols=225 Identities=13% Similarity=0.063 Sum_probs=113.5
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK 183 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t 183 (402)
++.||+.... ..+.++|+.+++...+.... ..-..+++..++.||+...... .....++.++...
T Consensus 152 ~g~Lyv~D~~-----~~I~~id~~~g~v~~~~~~~-------~~P~giavd~dG~lyVad~~~~---~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 152 YDDLYWVGQR-----DAFRHVDFVNQYVDIKTTNI-------GQCADVNFTLNGDMVVVDDQSS---DTNTGIYLFTRAS 216 (433)
T ss_dssp TCEEEEECBT-----SCEEEEETTTTEEEEECCCC-------SCEEEEEECTTCCEEEEECCSC---TTSEEEEEECGGG
T ss_pred CCEEEEEeCC-----CCEEEEECCCCEEEEeecCC-------CCccEEEECCCCCEEEEcCCCC---cccceEEEEECCC
Confidence 4778887432 56889999888877664321 1223344444666888754311 1123466666543
Q ss_pred CceeecCCCcccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcE-EEcCCCCCCCcceeEEEE-CC-EEEE
Q 040145 184 NRWTVMNKMITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNW-RTIASMGTNMASYDAAVL-DG-KLLV 258 (402)
Q Consensus 184 ~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~~~~~~~~~~-~g-~ly~ 258 (402)
+ +.....++.......+++. ++.||+.-.. ...+++||+.++.- +.+............++. +| .||+
T Consensus 217 ~-~~~~~~~~~~~~P~giavd~~~G~lyv~d~~------~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYv 289 (433)
T 4hw6_A 217 G-FTERLSLCNARGAKTCAVHPQNGKIYYTRYH------HAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYI 289 (433)
T ss_dssp T-TCCEEEEEECSSBCCCEECTTTCCEEECBTT------CSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEE
T ss_pred C-eeccccccccCCCCEEEEeCCCCeEEEEECC------CCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEE
Confidence 2 2210111111222233433 5788887542 45799999987765 333211111111123332 44 4888
Q ss_pred EcccccCCccCCcEEEEeCC--CCCeee---cccc-----cc------CCCcee--EEE----------ECCEEEEEecc
Q 040145 259 TEGWLWPFFVSPRGQVYDPS--TDNWES---MAVG-----LR------EGWTGS--SVV----------VYEHLFVVSEL 310 (402)
Q Consensus 259 ~gG~~~~~~~~~~~~~yd~~--~~~W~~---~~~~-----~~------~~~~~~--~~~----------~~~~l~~~gg~ 310 (402)
.-.. .+.+.++|.. ++.... +... .. ...... .++ -+|.||+....
T Consensus 290 ad~~------~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~ 363 (433)
T 4hw6_A 290 IYNG------KHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD 363 (433)
T ss_dssp EETT------TTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT
T ss_pred EeCC------CCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC
Confidence 7532 2468886654 343321 1100 00 001111 233 35678887543
Q ss_pred CCcEEEEEeCCCCceeecCCCCC-------------CccccCCeEEEEe--CCEEEEEecCce
Q 040145 311 ERMKLKVYDPSTDSWETIEGPPL-------------PEQICKPFAVNAC--DCRVYVVGRNLH 358 (402)
Q Consensus 311 ~~~~~~~yd~~~~~W~~~~~~~~-------------p~~~~~~~~~~~~--~~~i~v~GG~~~ 358 (402)
...|.++|+. .....+.+... ........++++. ++.|||.--.++
T Consensus 364 -n~~I~~~~~~-G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~ 424 (433)
T 4hw6_A 364 -SHTVRVLTPE-GRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNH 424 (433)
T ss_dssp -TTEEEEECTT-SEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGT
T ss_pred -CCEEEEECCC-CCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCC
Confidence 6789999984 45555543211 1122345567765 789999765443
No 266
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=90.08 E-value=11 Score=34.38 Aligned_cols=159 Identities=14% Similarity=0.083 Sum_probs=85.1
Q ss_pred eEEEEECCCCceeecCCCcccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCC----cEEEc-C-CCCCCCcc
Q 040145 175 LVLKYEMQKNRWTVMNKMITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKG----NWRTI-A-SMGTNMAS 246 (402)
Q Consensus 175 ~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~----~W~~~-~-~~~~~~~~ 246 (402)
++.++|..+..++.+.+ ......+++.. +++||+.--. ...++.+++... ....+ . .+.. -
T Consensus 93 ~I~~i~l~~~~~~~~~~--~~~~~~~l~~d~~~~~lywsD~~------~~~I~~~~~~g~~~~~~~~~~~~~~~~~---p 161 (400)
T 3p5b_L 93 EVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLS------QRMICSTQLDRAHGVSSYDTVISRDIQA---P 161 (400)
T ss_dssp EEEEECTTSCSCEEEEC--SCSCEEEEEEETTTTEEEEEETT------TTEEEEEEC------CCCEEEECSSCSC---E
T ss_pred eeEEEccCCcceeEecc--ccCcceEEeeeeccCceEEEecC------CCeEEEEEcccCCCCCcceEEEeCCCCC---c
Confidence 67788887776655422 12223344443 5799998643 456888887652 22222 2 1111 1
Q ss_pred eeEEE--ECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccc-cccCCCceeEEE--ECCEEEEEeccCCcEEEEEeCC
Q 040145 247 YDAAV--LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV-GLREGWTGSSVV--VYEHLFVVSELERMKLKVYDPS 321 (402)
Q Consensus 247 ~~~~~--~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~~~~--~~~~l~~~gg~~~~~~~~yd~~ 321 (402)
.+.++ .++.||+.-.. ...+.++|+....-..+.. ....+ ...++ .++.||+........|++++++
T Consensus 162 ~glavD~~~~~lY~~d~~------~~~I~~~~~~g~~~~~l~~~~~~~P--~~iavdp~~g~ly~td~~~~~~I~~~~~d 233 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSV------LGTVSVADTKGVKRKTLFRENGSKP--RAIVVDPVHGFMYWTDWGTPAKIKKGGLN 233 (400)
T ss_dssp EEEEEETTTTEEEEEETT------TTEEEEECTTTCSEEEEEECSSCCE--EEEEEETTTTEEEEEECSSSCCEEEEETT
T ss_pred ccEEEEecCCceEEEECC------CCeEEEEeCCCCceEEEEeCCCCCc--ceEEEecccCeEEEEeCCCCCEEEEEeCC
Confidence 22333 27899998643 2478899987665444432 11111 11222 3688998863334689999987
Q ss_pred CCceeecCCCCCCccccCCeEEEEe--CCEEEEEecC
Q 040145 322 TDSWETIEGPPLPEQICKPFAVNAC--DCRVYVVGRN 356 (402)
Q Consensus 322 ~~~W~~~~~~~~p~~~~~~~~~~~~--~~~i~v~GG~ 356 (402)
...=+.+....+ ....++++- +++||+.-..
T Consensus 234 G~~~~~~~~~~l----~~P~glavd~~~~~lY~aD~~ 266 (400)
T 3p5b_L 234 GVDIYSLVTENI----QWPNGITLDLLSGRLYWVDSK 266 (400)
T ss_dssp SCSCEEEECSSC----SCEEEEEEETTTTEEEEEETT
T ss_pred CCccEEEEECCC----CceEEEEEEeCCCEEEEEECC
Confidence 643333321111 233455543 6788887543
No 267
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=89.98 E-value=6.9 Score=35.42 Aligned_cols=122 Identities=13% Similarity=0.055 Sum_probs=70.2
Q ss_pred cCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCC-----CCcE-EEcCC-CCCCCcceeEEEECCEEEEEcc
Q 040145 189 MNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPV-----KGNW-RTIAS-MGTNMASYDAAVLDGKLLVTEG 261 (402)
Q Consensus 189 ~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~-----t~~W-~~~~~-~~~~~~~~~~~~~~g~ly~~gG 261 (402)
++..+..-.-|+.+.+++.-|++|-..+.-.+..--..|-+. ...- +.++. ........+.-.++|.||++--
T Consensus 277 L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyYdgvLyLtTR 356 (670)
T 3ju4_A 277 LGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIKYYDGVLYLITR 356 (670)
T ss_dssp CCSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCGGGCTTEEEEEEEEETTEEEEEEE
T ss_pred cccccceeeeeeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEec
Confidence 455555566788899988888888665444323322333222 1112 22322 2222233445567999999854
Q ss_pred cccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEecc
Q 040145 262 WLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSEL 310 (402)
Q Consensus 262 ~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~ 310 (402)
...+...-..+.+-+.....|+.+.-+-........ +..++.||+||..
T Consensus 357 gt~~~~~GS~L~rs~d~Gq~w~slrfp~nvHhtnlPFakvgD~l~mFgsE 406 (670)
T 3ju4_A 357 GTRGDRLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGSE 406 (670)
T ss_dssp ESCTTSCCCEEEEESSTTSSCEEEECTTCCCSSCCCEEEETTEEEEEEEC
T ss_pred CcCCCCCcceeeeecccCCchhheeccccccccCCCcceeCCEEEEEecc
Confidence 333333334677777778889988743222222222 6789999999853
No 268
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=89.85 E-value=10 Score=33.76 Aligned_cols=187 Identities=9% Similarity=-0.046 Sum_probs=102.2
Q ss_pred CCCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECC
Q 040145 103 KDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQ 182 (402)
Q Consensus 103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~ 182 (402)
.++.||+.. .....++++++.......+...... ...+.++-..++.||+.-.. .+.++++++.
T Consensus 83 ~~~~ly~~D----~~~~~I~r~~~~g~~~~~~~~~~~~-----~p~glavd~~~g~ly~~d~~-------~~~I~~~~~d 146 (349)
T 3v64_C 83 RRELVFWSD----VTLDRILRANLNGSNVEEVVSTGLE-----SPGGLAVDWVHDKLYWTDSG-------TSRIEVANLD 146 (349)
T ss_dssp TTTEEEEEE----TTTTEEEEEETTSCSCEEEECSSCS-----CCCEEEEETTTTEEEEEETT-------TTEEEEEETT
T ss_pred cccEEEEEe----ccCCceEEEecCCCCceEEEeCCCC-----CccEEEEecCCCeEEEEcCC-------CCeEEEEcCC
Confidence 356677664 2233577788776654443221110 12344444347899988543 3479999987
Q ss_pred CCceeecC--CCcccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeE-EE--ECCE
Q 040145 183 KNRWTVMN--KMITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDA-AV--LDGK 255 (402)
Q Consensus 183 t~~W~~~~--~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~-~~--~~g~ 255 (402)
...-+.+. .+..| ..+++- ++.||+.-... ...++++++....-+.+.. ........ ++ .++.
T Consensus 147 G~~~~~l~~~~l~~P---~~iavdp~~g~ly~td~~~-----~~~I~r~~~dG~~~~~~~~--~~~~~PnGla~d~~~~~ 216 (349)
T 3v64_C 147 GAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWGN-----TPRIEASSMDGSGRRIIAD--THLFWPNGLTIDYAGRR 216 (349)
T ss_dssp SCSCEEEECTTCSCE---EEEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCEESCC--SSCSCEEEEEEETTTTE
T ss_pred CCceEEEEeCCCCCc---ceEEEecCcCeEEEeccCC-----CCEEEEEeCCCCCcEEEEE--CCCCCcceEEEeCCCCE
Confidence 65433321 22222 233443 67899885321 3678999887554444321 11222233 33 2688
Q ss_pred EEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCC
Q 040145 256 LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTD 323 (402)
Q Consensus 256 ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~ 323 (402)
||+.-.. .+.++++|+....-..+.. .....-...++.++.||+.... ...|.++|..+.
T Consensus 217 lY~aD~~------~~~I~~~~~dG~~~~~~~~-~~~~~P~giav~~~~ly~td~~-~~~V~~~~~~~G 276 (349)
T 3v64_C 217 MYWVDAK------HHVIERANLDGSHRKAVIS-QGLPHPFAITVFEDSLYWTDWH-TKSINSANKFTG 276 (349)
T ss_dssp EEEEETT------TTEEEEEETTSCSCEEEEC-SSCSSEEEEEEETTEEEEEETT-TTEEEEEETTTC
T ss_pred EEEEECC------CCEEEEEeCCCCceEEEEe-CCCCCceEEEEECCEEEEecCC-CCeEEEEEccCC
Confidence 9998542 2479999987533222221 1111222234578999988543 678999986544
No 269
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=89.68 E-value=8.4 Score=38.23 Aligned_cols=147 Identities=13% Similarity=0.036 Sum_probs=78.8
Q ss_pred cCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCC--CcccccceEEEE--ECCEEEEEcCCCCCCCCCCeeEEEcCC
Q 040145 155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNK--MITARSFFASGV--IGGMIYVAGGSSADLFELDSAEVLDPV 230 (402)
Q Consensus 155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~--~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~ 230 (402)
.++.||+.-.. ...++++++....-+.+-. +..|+ ++++ .++.||+.-.. . ...++++++.
T Consensus 463 ~~g~LY~tD~~-------~~~I~v~d~dg~~~~~l~~~~~~~P~---giavDp~~g~ly~td~~----~-~~~I~~~~~d 527 (699)
T 1n7d_A 463 IHSNIYWTDSV-------LGTVSVADTKGVKRKTLFREQGSKPR---AIVVDPVHGFMYWTDWG----T-PAKIKKGGLN 527 (699)
T ss_dssp SSSBCEECCTT-------TSCEEEEBSSSCCEEEECCCSSCCCC---CEECCSSSSCCEECCCS----S-SCCEEBCCSS
T ss_pred eCCcEEEEecc-------CCeEEEEecCCCceEEEEeCCCCCcc---eEEEccCCCcEEEcccC----C-CCeEEEEeCC
Confidence 46788886422 3478999987665444321 22222 2233 35778876421 0 2467777765
Q ss_pred CCcEEEcCCCCCCCcceeEEEE---CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccc-cCCCceeEEEECCEEEE
Q 040145 231 KGNWRTIASMGTNMASYDAAVL---DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGL-REGWTGSSVVVYEHLFV 306 (402)
Q Consensus 231 t~~W~~~~~~~~~~~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~~~~~~~~~~~~~l~~ 306 (402)
...-+.+... .........+ +++||+.-.. .+.|++||+....-..+.... ........++.++.||+
T Consensus 528 G~~~~~l~~~--~l~~PnGlavd~~~~~LY~aD~~------~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lyw 599 (699)
T 1n7d_A 528 GVDIYSLVTE--NIQWPNGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFW 599 (699)
T ss_dssp SCCCCEESCS--SCSSCCCEEECTTTCCEEEEETT------TTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEE
T ss_pred CCCeeEEEeC--CCCCccEEEEeccCCEEEEEecC------CCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEE
Confidence 4332222111 1112222333 5789997643 357999998754333332211 11111122456789998
Q ss_pred EeccCCcEEEEEeCCCCce
Q 040145 307 VSELERMKLKVYDPSTDSW 325 (402)
Q Consensus 307 ~gg~~~~~~~~yd~~~~~W 325 (402)
... ....|.++|+.+.+-
T Consensus 600 td~-~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 600 TDI-INEAIFSANRLTGSD 617 (699)
T ss_dssp ECS-TTTCEEEEETTTEEE
T ss_pred EeC-CCCeEEEEEccCCCc
Confidence 863 367899999876543
No 270
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=88.89 E-value=17 Score=35.04 Aligned_cols=180 Identities=10% Similarity=0.082 Sum_probs=93.5
Q ss_pred EEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceee-cCC--C---cc
Q 040145 121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTV-MNK--M---IT 194 (402)
Q Consensus 121 ~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~-~~~--~---~~ 194 (402)
+..||..+.+... .+.... ....++.+..++.+++.|+.+ ..+.+||..+++-.. +.. + ..
T Consensus 172 v~lwd~~~~~~~~--~l~~H~----~~V~~v~fspdg~~las~s~D-------~~i~lwd~~~g~~~~~~~~~~~~~~~h 238 (611)
T 1nr0_A 172 VAIFEGPPFKFKS--TFGEHT----KFVHSVRYNPDGSLFASTGGD-------GTIVLYNGVDGTKTGVFEDDSLKNVAH 238 (611)
T ss_dssp EEEEETTTBEEEE--EECCCS----SCEEEEEECTTSSEEEEEETT-------SCEEEEETTTCCEEEECBCTTSSSCSS
T ss_pred EEEEECCCCeEee--eecccc----CceEEEEECCCCCEEEEEECC-------CcEEEEECCCCcEeeeecccccccccc
Confidence 6677765544322 122111 223445555577888888763 268899988876432 211 0 11
Q ss_pred cccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCC-CcceeEEEECCEEEEEcccccCCccCCcE
Q 040145 195 ARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTN-MASYDAAVLDGKLLVTEGWLWPFFVSPRG 272 (402)
Q Consensus 195 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~-~~~~~~~~~~g~ly~~gG~~~~~~~~~~~ 272 (402)
...-.+++.. +++.++.|+. -..+.++|..+......-..... ......+..++..++.++.+ ..+
T Consensus 239 ~~~V~~v~~spdg~~l~s~s~------D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d------~~i 306 (611)
T 1nr0_A 239 SGSVFGLTWSPDGTKIASASA------DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN------GFI 306 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEET------TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETT------CCE
T ss_pred CCCEEEEEECCCCCEEEEEeC------CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCC------CcE
Confidence 1112233333 5666777765 45788999988775432111111 11222334466655655543 257
Q ss_pred EEEeCCCCCeeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeec
Q 040145 273 QVYDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETI 328 (402)
Q Consensus 273 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~ 328 (402)
..||+.+..-...-. .....-..+.+ +++.++.|+. ...+.+||..+..-..+
T Consensus 307 ~~~~~~~~~~~~~~~--gh~~~v~~l~~spdg~~l~s~s~-D~~v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 307 NFVNPELGSIDQVRY--GHNKAITALSSSADGKTLFSADA-EGHINSWDISTGISNRV 361 (611)
T ss_dssp EEEETTTTEEEEEEC--CCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTTCCEEEC
T ss_pred EEEeCCCCCcceEEc--CCCCCEEEEEEeCCCCEEEEEeC-CCcEEEEECCCCceeee
Confidence 788877654221111 11111112222 6777777765 45788999988765443
No 271
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=88.79 E-value=12 Score=33.20 Aligned_cols=165 Identities=8% Similarity=0.031 Sum_probs=75.0
Q ss_pred EEEEccCC-EEEEEeCccCCCCCCCceEEEEECC-CCceeecCCCc--c-cccceEEEEE-CC-EEEEEcCCCCCCCCCC
Q 040145 150 CVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQ-KNRWTVMNKMI--T-ARSFFASGVI-GG-MIYVAGGSSADLFELD 222 (402)
Q Consensus 150 ~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~-t~~W~~~~~~~--~-~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~ 222 (402)
.+++..++ .||+.... .+.+.+||.. +++.+.+..+. . ......++.. ++ .+|+.+.. ..
T Consensus 149 ~~~~spdG~~l~~~~~~-------~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~------~~ 215 (365)
T 1jof_A 149 GMVFDPTETYLYSADLT-------ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA------GN 215 (365)
T ss_dssp EEEECTTSSEEEEEETT-------TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT------TT
T ss_pred EEEECCCCCEEEEEcCC-------CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECC------CC
Confidence 33443455 56665321 2479999988 77665433222 1 1112223333 34 67776532 23
Q ss_pred eeEEE--cCCCCcEE----EcCCCCCCC---c-------ceeEEE-E--CCE-EEEEcccccCCccCCcEEEEeCC-CCC
Q 040145 223 SAEVL--DPVKGNWR----TIASMGTNM---A-------SYDAAV-L--DGK-LLVTEGWLWPFFVSPRGQVYDPS-TDN 281 (402)
Q Consensus 223 ~~~~y--d~~t~~W~----~~~~~~~~~---~-------~~~~~~-~--~g~-ly~~gG~~~~~~~~~~~~~yd~~-~~~ 281 (402)
.+.+| |..+++.. .+..++... . ....+. + +|+ ||+.. ..........+.+||+. +++
T Consensus 216 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~-~~~~~~~~~~i~v~~~~~~g~ 294 (365)
T 1jof_A 216 RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS-RANKFELQGYIAGFKLRDCGS 294 (365)
T ss_dssp EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE-EESSTTSCCEEEEEEECTTSC
T ss_pred eEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEEC-CCCCCCCCCeEEEEEECCCCC
Confidence 45555 55566543 344444321 1 223333 3 565 55443 22110011267888875 565
Q ss_pred eeeccc--c-ccCCCceeEEEE---CCEEEEEeccCCcEEEEEeCCCCceeec
Q 040145 282 WESMAV--G-LREGWTGSSVVV---YEHLFVVSELERMKLKVYDPSTDSWETI 328 (402)
Q Consensus 282 W~~~~~--~-~~~~~~~~~~~~---~~~l~~~gg~~~~~~~~yd~~~~~W~~~ 328 (402)
...+.. . ....-...+..- +|+.+++++.+.+.+.+|+.+.+.-+.+
T Consensus 295 ~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~l~~~ 347 (365)
T 1jof_A 295 IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHRV 347 (365)
T ss_dssp EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEEEE
T ss_pred EEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhhCcee
Confidence 543211 0 111111122233 4554445554456777777765543333
No 272
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=88.68 E-value=18 Score=34.94 Aligned_cols=185 Identities=11% Similarity=0.074 Sum_probs=92.5
Q ss_pred eEEEEccCC-EEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccc-ccceEEEEE-CCEEEEEcCCCCCCCCCCeeE
Q 040145 149 RCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITA-RSFFASGVI-GGMIYVAGGSSADLFELDSAE 225 (402)
Q Consensus 149 ~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~ 225 (402)
.++.+..++ ..++.|+.+ ..+.+||..+.+... .+... ..-.+++.. ++++++.|+. -..+.
T Consensus 151 ~~v~f~p~~~~~l~s~s~D-------~~v~lwd~~~~~~~~--~l~~H~~~V~~v~fspdg~~las~s~------D~~i~ 215 (611)
T 1nr0_A 151 NSVDFKPSRPFRIISGSDD-------NTVAIFEGPPFKFKS--TFGEHTKFVHSVRYNPDGSLFASTGG------DGTIV 215 (611)
T ss_dssp EEEEECSSSSCEEEEEETT-------SCEEEEETTTBEEEE--EECCCSSCEEEEEECTTSSEEEEEET------TSCEE
T ss_pred eEEEECCCCCeEEEEEeCC-------CeEEEEECCCCeEee--eeccccCceEEEEECCCCCEEEEEEC------CCcEE
Confidence 344443344 356777653 268889976654322 12111 112233332 5677777776 34688
Q ss_pred EEcCCCCcEEE-cCCC--C--CCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccc-cccCCCceeE
Q 040145 226 VLDPVKGNWRT-IASM--G--TNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV-GLREGWTGSS 297 (402)
Q Consensus 226 ~yd~~t~~W~~-~~~~--~--~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~~ 297 (402)
+||..++.-.. +... . ........+.+ +|+.++.|+.+ ..+..+|+.+.+....-. ..........
T Consensus 216 lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D------~~v~lWd~~~~~~~~~~~~~~~~~~~~~~ 289 (611)
T 1nr0_A 216 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD------KTIKIWNVATLKVEKTIPVGTRIEDQQLG 289 (611)
T ss_dssp EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEECCSSGGGCEEE
T ss_pred EEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC------CeEEEEeCCCCceeeeecCCCCccceeEE
Confidence 89988776432 2110 0 11111222333 67777777753 368899998776543211 1011111122
Q ss_pred EEECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEE-EeCCEEEEEecCcee
Q 040145 298 VVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLHV 359 (402)
Q Consensus 298 ~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~ 359 (402)
+..++..++.++. ...+..||+.+..-.... .... ..-.+++ ..+++.++.|+.++.
T Consensus 290 ~~~~~~~l~s~s~-d~~i~~~~~~~~~~~~~~---~gh~-~~v~~l~~spdg~~l~s~s~D~~ 347 (611)
T 1nr0_A 290 IIWTKQALVSISA-NGFINFVNPELGSIDQVR---YGHN-KAITALSSSADGKTLFSADAEGH 347 (611)
T ss_dssp EEECSSCEEEEET-TCCEEEEETTTTEEEEEE---CCCS-SCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEcCCEEEEEeC-CCcEEEEeCCCCCcceEE---cCCC-CCEEEEEEeCCCCEEEEEeCCCc
Confidence 4456666666655 456888888776432221 1111 1111222 346777777776543
No 273
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=88.60 E-value=13 Score=33.21 Aligned_cols=119 Identities=13% Similarity=0.077 Sum_probs=59.5
Q ss_pred CCeEEEEEEe-CCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCC--CCCCceEEEEE
Q 040145 104 DPWLFVFAFH-KCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDV--DCPLDLVLKYE 180 (402)
Q Consensus 104 ~~~l~~~gg~-~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~--~~~~~~~~~~d 180 (402)
...+|+.... .......+++||+.+.+-.. .++... ..+.+....+..+|+..-..... ....+.+.+||
T Consensus 15 ~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~--~i~~g~-----~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d 87 (361)
T 2oiz_A 15 ENRIYVMDSVFMHLTESRVHVYDYTNGKFLG--MVPTAF-----NGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWD 87 (361)
T ss_dssp GGEEEEEECCGGGGGGCEEEEEETTTCCEEE--EEECCE-----EEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEE
T ss_pred CCEEEEECCCCCccccCeEEEEECCCCeEEE--EecCCC-----CCceEECCCCCEEEEEEecccccccCCCCCEEEEEE
Confidence 4567777422 11223468899988876532 222111 11333333345788875321100 01234699999
Q ss_pred CCCCcee-ecCCCc----ccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcE
Q 040145 181 MQKNRWT-VMNKMI----TARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNW 234 (402)
Q Consensus 181 ~~t~~W~-~~~~~~----~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 234 (402)
+.+.+-. .++-.+ .....+.+++. +..+|+.... ..+.+.+||..+++-
T Consensus 88 ~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~-----~~~~v~v~d~~~~~~ 143 (361)
T 2oiz_A 88 ADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS-----PATSIGIVDVAKGDY 143 (361)
T ss_dssp TTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEES-----SSEEEEEEETTTTEE
T ss_pred CcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCC-----CCCeEEEEECCCCcE
Confidence 9876532 222111 01122233332 4467776421 036788999988753
No 274
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=88.50 E-value=14 Score=33.54 Aligned_cols=148 Identities=10% Similarity=0.055 Sum_probs=76.6
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCceee-cCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCc
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTV-MNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGN 233 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~-~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 233 (402)
++.+++.|+.+ ..+.+||..+++-.. +...+....-.+++.. ++..++.|+. ...+.+||..++.
T Consensus 181 ~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~------dg~i~iwd~~~~~ 247 (437)
T 3gre_A 181 EKSLLVALTNL-------SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT------RGIIDIWDIRFNV 247 (437)
T ss_dssp SCEEEEEEETT-------SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET------TSCEEEEETTTTE
T ss_pred CCCEEEEEeCC-------CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC------CCeEEEEEcCCcc
Confidence 57777777752 379999998875322 2111111222222322 5677777775 3458899998865
Q ss_pred EEEcCCCCCCCcceeEE-EE-----CCEEEEEcccccCCccCCcEEEEeCCCCCeee-ccc---------ccc-------
Q 040145 234 WRTIASMGTNMASYDAA-VL-----DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES-MAV---------GLR------- 290 (402)
Q Consensus 234 W~~~~~~~~~~~~~~~~-~~-----~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~-~~~---------~~~------- 290 (402)
....-..... .....+ .. ++.+++.|+.+ ..+.+||..+++-.. +.. ..+
T Consensus 248 ~~~~~~~~~~-~~v~~~~~~~~~s~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (437)
T 3gre_A 248 LIRSWSFGDH-APITHVEVCQFYGKNSVIVVGGSSK------TFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEE 320 (437)
T ss_dssp EEEEEBCTTC-EEEEEEEECTTTCTTEEEEEEESTT------EEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGG
T ss_pred EEEEEecCCC-CceEEEEeccccCCCccEEEEEcCC------CcEEEEEcCCCcEEEEEEcCCCCCccceeccccccccc
Confidence 4321111111 111111 11 34566666543 257888887654211 110 000
Q ss_pred --------CCCceeEEEECCEEEEEeccCCcEEEEEeCCCCc
Q 040145 291 --------EGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 291 --------~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
.......+..++.+++.|+. ...+.+||..+.+
T Consensus 321 ~~~~~~~~~~~v~~l~~~~~~~l~s~~~-d~~i~~wd~~~~~ 361 (437)
T 3gre_A 321 LNFCGIRSLNALSTISVSNDKILLTDEA-TSSIVMFSLNELS 361 (437)
T ss_dssp CCCCCCCSGGGGCCEEEETTEEEEEEGG-GTEEEEEETTCGG
T ss_pred ceecccccCCceEEEEECCceEEEecCC-CCeEEEEECCCcc
Confidence 00011223347777777776 4589999988764
No 275
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=87.51 E-value=16 Score=33.10 Aligned_cols=103 Identities=10% Similarity=0.023 Sum_probs=52.2
Q ss_pred CCEEEEEcCCCCCCCCCCeeEEEcCCCC--cEEEcCCCC----CCCcceeEEEE--CC-EEEEEcccccCCccCCcEEEE
Q 040145 205 GGMIYVAGGSSADLFELDSAEVLDPVKG--NWRTIASMG----TNMASYDAAVL--DG-KLLVTEGWLWPFFVSPRGQVY 275 (402)
Q Consensus 205 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~~----~~~~~~~~~~~--~g-~ly~~gG~~~~~~~~~~~~~y 275 (402)
++++++.| . ...+.+||..+. .+..+...+ ........+.+ ++ .+++.|+.+ ..+..|
T Consensus 188 ~~~~l~s~-~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d------g~i~iw 254 (447)
T 3dw8_B 188 DYETYLSA-D------DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSK------GTIRLC 254 (447)
T ss_dssp TSSEEEEE-C------SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETT------SCEEEE
T ss_pred CCCEEEEe-C------CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCC------CeEEEE
Confidence 45555555 3 356888998842 233221111 11122223333 44 677777753 368999
Q ss_pred eCCCCCe-----eeccccccC-C--------CceeEEEE--CCEEEEEeccCCcEEEEEeCCC
Q 040145 276 DPSTDNW-----ESMAVGLRE-G--------WTGSSVVV--YEHLFVVSELERMKLKVYDPST 322 (402)
Q Consensus 276 d~~~~~W-----~~~~~~~~~-~--------~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~ 322 (402)
|+.+.+- ..+...... . ..-..+.+ ++++++.|+. ..+.+||..+
T Consensus 255 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~v~iwd~~~ 315 (447)
T 3dw8_B 255 DMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY--LSVKVWDLNM 315 (447)
T ss_dssp ETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES--SEEEEEETTC
T ss_pred ECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC--CeEEEEeCCC
Confidence 9987663 222211000 0 01112222 5666666654 7899999975
No 276
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=86.49 E-value=23 Score=33.78 Aligned_cols=141 Identities=15% Similarity=0.135 Sum_probs=74.0
Q ss_pred CceEEEEEC--CCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEE
Q 040145 173 LDLVLKYEM--QKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAA 250 (402)
Q Consensus 173 ~~~~~~~d~--~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~ 250 (402)
...++.++. .... ..+......+ ..+...-++.++++.+. ...+.+||..++.-+.+...+. .....
T Consensus 89 ~~~l~~~~~~~~g~~-~~l~~~~~~~-~~~~s~dg~~~~~~s~~------~~~~~l~d~~~g~~~~l~~~~~---~~~~~ 157 (582)
T 3o4h_A 89 QHALFKVNTSRPGEE-QRLEAVKPMR-ILSGVDTGEAVVFTGAT------EDRVALYALDGGGLRELARLPG---FGFVS 157 (582)
T ss_dssp CEEEEEEETTSTTCC-EECTTSCSBE-EEEEEECSSCEEEEEEC------SSCEEEEEEETTEEEEEEEESS---CEEEE
T ss_pred ceEEEEEeccCCCcc-ccccCCCCce-eeeeCCCCCeEEEEecC------CCCceEEEccCCcEEEeecCCC---ceEEE
Confidence 346777877 4332 2333322222 12222234445555443 2334588998887666643332 22223
Q ss_pred EECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCC-cEEEEEeCCCCceee
Q 040145 251 VLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELER-MKLKVYDPSTDSWET 327 (402)
Q Consensus 251 ~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~-~~~~~yd~~~~~W~~ 327 (402)
.-+|+..++++...... ..++.+|+.++++..+... ..........-+|+.++.+..++ ..++++|.++.+...
T Consensus 158 spDG~~la~~~~~~~~~--~~i~~~d~~~g~~~~l~~~-~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~ 232 (582)
T 3o4h_A 158 DIRGDLIAGLGFFGGGR--VSLFTSNLSSGGLRVFDSG-EGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVED 232 (582)
T ss_dssp EEETTEEEEEEEEETTE--EEEEEEETTTCCCEEECCS-SCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEE
T ss_pred CCCCCEEEEEEEcCCCC--eEEEEEcCCCCCceEeecC-CCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEE
Confidence 34777666555432221 3589999999988766431 11111111223666555443322 489999999887773
No 277
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=86.48 E-value=19 Score=32.73 Aligned_cols=120 Identities=11% Similarity=-0.077 Sum_probs=65.2
Q ss_pred CCCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCC--CCCceEEEEE
Q 040145 103 KDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVD--CPLDLVLKYE 180 (402)
Q Consensus 103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~--~~~~~~~~~d 180 (402)
...++|+...........+.++|+.+.+-...-+.. . . .+.+....+..+|+......... ...+.+.++|
T Consensus 43 d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG--~----~-P~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 43 DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG--F----L-PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC--S----S-CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC--C----C-CcEEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 367899886432222457999999988754322222 1 1 13444434556888753210000 0235799999
Q ss_pred CCCCceeecCCCcc------cccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcE
Q 040145 181 MQKNRWTVMNKMIT------ARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNW 234 (402)
Q Consensus 181 ~~t~~W~~~~~~~~------~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 234 (402)
+.|++-..--+++. ....+.+++. +..+|+.... ..+.+.++|..+++-
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~-----~~~~VsVID~~t~~v 172 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS-----PAPAVGVVDLEGKAF 172 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS-----SSCEEEEEETTTTEE
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC-----CCCeEEEEECCCCcE
Confidence 99987433111111 1123333433 4578887431 146789999999864
No 278
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=86.48 E-value=21 Score=33.22 Aligned_cols=124 Identities=13% Similarity=0.149 Sum_probs=60.1
Q ss_pred CCCCCeEEEEEEeC---CCCceeEEEeecCC--CcEE---eCCCCCCCCCCCCC-CceEEEE---------ccCCEEEEE
Q 040145 101 GFKDPWLFVFAFHK---CTGKIQWQVLDLTH--YCWH---TIPAMPCKDKVCPH-GFRCVSI---------PREGTLFVC 162 (402)
Q Consensus 101 ~~~~~~l~~~gg~~---~~~~~~~~~~d~~~--~~W~---~l~~~~~~~~~~~~-~~~~~~~---------~~~~~i~v~ 162 (402)
+..+..+|+..... ......+...|... .+.. ..-+||...-..+| ++.+++. .....+|+-
T Consensus 22 ~~~e~~~y~~~~~~~~~~~~~d~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~ 101 (462)
T 2ece_A 22 APPEDLAYVACLYTGTGINRADFIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVP 101 (462)
T ss_dssp SCCCSEEEEEEECTTTTCCCCCEEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEE
T ss_pred CCcceEEEEEeeccCCCCCCCCeEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEc
Confidence 56788999997763 22333455555553 3321 11123321111112 2211211 124466666
Q ss_pred eCccCCCCCCCceEEEEECCCC----ceee-cC--CC--ccc-ccceEEEEECCEEEEE--cCCCCCCCCCCeeEEEcCC
Q 040145 163 GGMVSDVDCPLDLVLKYEMQKN----RWTV-MN--KM--ITA-RSFFASGVIGGMIYVA--GGSSADLFELDSAEVLDPV 230 (402)
Q Consensus 163 GG~~~~~~~~~~~~~~~d~~t~----~W~~-~~--~~--~~~-r~~~~~~~~~~~iyv~--GG~~~~~~~~~~~~~yd~~ 230 (402)
|.. ++.++++|..++ +-.+ +. .+ ... ...|++....+.|||. |+..+. ....+.++|.+
T Consensus 102 ~l~-------s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~--~~g~v~vlD~~ 172 (462)
T 2ece_A 102 GLR-------SSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGE--GPGGILMLDHY 172 (462)
T ss_dssp BTT-------TCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSC--SCCEEEEECTT
T ss_pred cCC-------CCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCC--CCCeEEEEECC
Confidence 553 468999999876 2211 11 01 111 1234444443337773 332222 25789999999
Q ss_pred CCc
Q 040145 231 KGN 233 (402)
Q Consensus 231 t~~ 233 (402)
|.+
T Consensus 173 T~~ 175 (462)
T 2ece_A 173 SFE 175 (462)
T ss_dssp TCC
T ss_pred CCe
Confidence 876
No 279
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=86.34 E-value=28 Score=36.74 Aligned_cols=181 Identities=15% Similarity=0.149 Sum_probs=95.5
Q ss_pred ceEEEEECCCCceeecCCCcccccc--eEEEEE--C---CEEEEEcCC----CCCCCCCCeeEEEcCCCCcEEEcCCCCC
Q 040145 174 DLVLKYEMQKNRWTVMNKMITARSF--FASGVI--G---GMIYVAGGS----SADLFELDSAEVLDPVKGNWRTIASMGT 242 (402)
Q Consensus 174 ~~~~~~d~~t~~W~~~~~~~~~r~~--~~~~~~--~---~~iyv~GG~----~~~~~~~~~~~~yd~~t~~W~~~~~~~~ 242 (402)
+.+.++||.+ |+.+......-.. .+++.+ . ...+++|-. .+.......+.+|+...++.+.+.....
T Consensus 807 s~i~lidp~t--~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v 884 (1158)
T 3ei3_A 807 HNLLIIDQHT--FEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEV 884 (1158)
T ss_dssp EEEEEEETTT--CCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEeCCC--CeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEc
Confidence 4567788865 5554332222111 222222 1 245566642 1122235668888887666666654444
Q ss_pred CCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeecccc-ccCCCceeE-EEECCEEEEEeccCCcEEEEEeC
Q 040145 243 NMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVG-LREGWTGSS-VVVYEHLFVVSELERMKLKVYDP 320 (402)
Q Consensus 243 ~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~~~~~~~-~~~~~~l~~~gg~~~~~~~~yd~ 320 (402)
...-.+.+.++|+|.+.-| +.+.+||...++--..... .+. -.... .+.++.|++-.-..+-.+..|+.
T Consensus 885 ~g~v~al~~~~g~Lla~ig--------~~l~vy~l~~~~~L~~~~~~~~~-i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~ 955 (1158)
T 3ei3_A 885 KGAVYSMVEFNGKLLASIN--------STVRLYEWTTEKELRTECNHYNN-IMALYLKTKGDFILVGDLMRSVLLLAYKP 955 (1158)
T ss_dssp SSCEEEEEEETTEEEEEET--------TEEEEEEECTTSCEEEEEEECCC-SCEEEEEEETTEEEEEESSBCEEEEEEET
T ss_pred CCcCEEEeeeCCEEEEEcC--------CEEEEEECCCCceEEEEeecccc-EEEEEEeccCCEEEEEEhhheEEEEEEEc
Confidence 3344556677897766544 3788999876653221110 111 01111 24577766544444667888999
Q ss_pred CCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEecccc
Q 040145 321 STDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTS 370 (402)
Q Consensus 321 ~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~ 370 (402)
..++-..++.-..| ++..++...++. .++|+ ++....-+..|++.
T Consensus 956 ~~~~L~~~a~D~~~---~~vta~~~ld~~-t~l~a-D~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 956 MEGNFEEIARDFNP---NWMSAVEILDDD-NFLGA-ENAFNLFVCQKDSA 1000 (1158)
T ss_dssp TTTEEEEEEECCSC---BCEEEEEEEETT-EEEEE-ETTSEEEEEEECTT
T ss_pred CCCeEEEEEeeccc---ccEEEEEEEccC-cEEEE-cCCCcEEEEecCCC
Confidence 98888888743444 444444444333 34444 23333556666663
No 280
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=86.16 E-value=30 Score=34.81 Aligned_cols=152 Identities=11% Similarity=0.002 Sum_probs=86.3
Q ss_pred ceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecC--CCcccccceEEEE--ECCEEEEEcCCCCCCCCCCe
Q 040145 148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMN--KMITARSFFASGV--IGGMIYVAGGSSADLFELDS 223 (402)
Q Consensus 148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~--~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~ 223 (402)
.+.++-..++.||+.-.. ...|+++++....-+.+. .+..| .++++ .++.||+.--. . ...
T Consensus 474 ~GLAvD~~~~~LY~tD~~-------~~~I~v~~ldG~~~~~l~~~~l~~P---~gIaVDp~~g~LYwtD~g----~-~~~ 538 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSV-------LGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWG----T-PAK 538 (791)
T ss_dssp CEEEEETTTTEEEEEETT-------TTEEEEEETTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEECS----S-SCE
T ss_pred ceeeeeecCCcEEEEecC-------CCeEEEEeCCCCeEEEEEeCCCCCc---ceEEEecCCCCEEEecCC----C-CCe
Confidence 345554457799998543 448999998766544432 22222 24444 35799998521 0 357
Q ss_pred eEEEcCCCCcEEEcCCCCCCCcceeEEEE---CCEEEEEcccccCCccCCcEEEEeCCCCCeeecccc-ccCCCceeEEE
Q 040145 224 AEVLDPVKGNWRTIASMGTNMASYDAAVL---DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVG-LREGWTGSSVV 299 (402)
Q Consensus 224 ~~~yd~~t~~W~~~~~~~~~~~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~~~~~~~~~ 299 (402)
++++++....-+.+.. .......+.++ +++||+.-.. .+.|+++|+....-..+... .........++
T Consensus 539 I~~~~~dG~~~~~lv~--~~l~~P~GLavD~~~~~LYwaD~~------~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav 610 (791)
T 3m0c_C 539 IKKGGLNGVDIYSLVT--ENIQWPNGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTILEDEKRLAHPFSLAV 610 (791)
T ss_dssp EEEEETTSCCEEEEEC--SSCSCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEEECTTTTSSEEEEEE
T ss_pred EEEEecCCCceEEEEe--CCCCCceEEEEecCCCeEEEEeCC------CCcEEEEecCCCceEEEecCCCccCCCCEEEE
Confidence 8888887554443321 11122333333 6899998542 35799999865443333221 11111112356
Q ss_pred ECCEEEEEeccCCcEEEEEeCCCC
Q 040145 300 VYEHLFVVSELERMKLKVYDPSTD 323 (402)
Q Consensus 300 ~~~~l~~~gg~~~~~~~~yd~~~~ 323 (402)
.+++||+.... ...|+++|..+.
T Consensus 611 ~~~~lYwtD~~-~~~I~~~dk~tG 633 (791)
T 3m0c_C 611 FEDKVFWTDII-NEAIFSANRLTG 633 (791)
T ss_dssp ETTEEEEEETT-TTEEEEEETTTC
T ss_pred eCCEEEEEECC-CCEEEEEeCCCC
Confidence 78999998644 668888886544
No 281
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=86.13 E-value=12 Score=30.26 Aligned_cols=144 Identities=18% Similarity=0.168 Sum_probs=75.8
Q ss_pred ceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC---Cceeec----CCCcccccceEEEEECCEEEEEcCCCCCCCC
Q 040145 148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK---NRWTVM----NKMITARSFFASGVIGGMIYVAGGSSADLFE 220 (402)
Q Consensus 148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t---~~W~~~----~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~ 220 (402)
+.++.. ..+++|++-|. .+|+++... +-=+.+ +.+|. ....+....++++|++-|
T Consensus 8 ~DA~~~-~~g~~~fFkg~---------~~w~~~~~~~~~gyP~~I~~~w~glP~-~iDAa~~~~~g~~yfFkg------- 69 (196)
T 3c7x_A 8 FDTVAM-LRGEMFVFKER---------WFWRVRNNQVMDGYPMPIGQFWRGLPA-SINTAYERKDGKFVFFKG------- 69 (196)
T ss_dssp CSEEEE-ETTEEEEEETT---------EEEEEETTEECTTCSEEHHHHSTTCCS-SCCEEEECTTSCEEEEET-------
T ss_pred ccEEEE-cCCEEEEEECC---------EEEEEECCccCCCCceEhhHhccCCCC-CccEEEEeCCCcEEEecC-------
Confidence 344433 48999999875 677876432 100111 12332 111111124678898876
Q ss_pred CCeeEEEcCCCCcE---EEcCC----CCCCCcceeEEE-E--CCEEEEEcccccCCccCCcEEEEeCCCCCeee-----c
Q 040145 221 LDSAEVLDPVKGNW---RTIAS----MGTNMASYDAAV-L--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES-----M 285 (402)
Q Consensus 221 ~~~~~~yd~~t~~W---~~~~~----~~~~~~~~~~~~-~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~-----~ 285 (402)
+..+.|+..+... +.+.. +|. ....++. . ++++|++-|. ..++||..+++-.. +
T Consensus 70 -~~yw~~~~~~~~~gyPk~I~~~~~glP~--~~IDAA~~~~~~g~~yfFkG~--------~yw~yd~~~~~v~~gyPk~i 138 (196)
T 3c7x_A 70 -DKHWVFDEASLEPGYPKHIKELGRGLPT--DKIDAALFWMPNGKTYFFRGN--------KYYRFNEELRAVDSEYPKNI 138 (196)
T ss_dssp -TEEEEEETTEECTTCSEEGGGTCBSCCS--SCCSEEEEETTTTEEEEEETT--------EEEEEETTTTEECTTCSEEG
T ss_pred -CEEEEEeCCcccCCCCeEhhhcCCCCCC--CcccEEEEEccCCEEEEEECC--------EEEEEeCCcccccCCCCccH
Confidence 3467777542110 12222 332 1233333 2 6899999773 67899987653221 1
Q ss_pred cc--cccCCCceeEEEE-CC-EEEEEeccCCcEEEEEeCCCCc
Q 040145 286 AV--GLREGWTGSSVVV-YE-HLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 286 ~~--~~~~~~~~~~~~~-~~-~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
.. .+|.. ..++... ++ ++|.+-|. ..++||..++.
T Consensus 139 ~~~~gip~~-idaAf~~~~~~~~YfFkg~---~y~r~d~~~~~ 177 (196)
T 3c7x_A 139 KVWEGIPES-PRGSFMGSDEVFTYFYKGN---KYWKFNNQKLK 177 (196)
T ss_dssp GGSBTCCSS-CSEEEECTTSSEEEEEETT---EEEEEETTTTE
T ss_pred HHCCCcCCC-cceeEEecCCCEEEEEECC---EEEEEECCcce
Confidence 11 11111 1222223 44 89999665 79999998763
No 282
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=86.07 E-value=19 Score=32.41 Aligned_cols=149 Identities=10% Similarity=0.069 Sum_probs=79.4
Q ss_pred CceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCce--eec----CCCcccccceEEEE--ECCEEEEEcCCCCCC
Q 040145 147 GFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRW--TVM----NKMITARSFFASGV--IGGMIYVAGGSSADL 218 (402)
Q Consensus 147 ~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W--~~~----~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~ 218 (402)
.+.++.. ..+++|++=|. .+|+++.....- ..+ +.+|. ... ++.. .++++|++-|.
T Consensus 182 ~fDAv~~-~~g~~~fFkg~---------~~Wr~~~~~~~~~p~~I~~~wpgLP~-~iD-Aa~~~~~~g~~~fFkg~---- 245 (365)
T 3ba0_A 182 SFDAVTT-VGNKIFFFKDR---------FFWLKVSERPKTSVNLISSLWPTLPS-GIE-AAYEIEARNQVFLFKDD---- 245 (365)
T ss_dssp CCSCEEE-ETTEEEEEETT---------EEEECCSSCCCCCEEEHHHHCSSCCS-SCC-EEEEEGGGTEEEEEETT----
T ss_pred ceeeEEE-cCCeEEEEeCC---------EEEEEcCCCccCCccchhhhccCCCC-Ccc-EEEEecCCCEEEEEeCC----
Confidence 3444443 38899999765 577776544211 011 22331 111 2222 27899998763
Q ss_pred CCCCeeEEEcCCCCc--E-EEcCC--CCCCCcceeEEE-E--CCEEEEEcccccCCccCCcEEEEeCCCCCeee-----c
Q 040145 219 FELDSAEVLDPVKGN--W-RTIAS--MGTNMASYDAAV-L--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES-----M 285 (402)
Q Consensus 219 ~~~~~~~~yd~~t~~--W-~~~~~--~~~~~~~~~~~~-~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~-----~ 285 (402)
..++|+..+.. + +.+.. +|.......+++ . ++++|+|-|. ..++||..+++-.. +
T Consensus 246 ----~yWr~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG~--------~yw~yd~~~~~v~~gyPk~I 313 (365)
T 3ba0_A 246 ----KYWLISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVDN--------QYWRYDERRQMMDPGYPKLI 313 (365)
T ss_dssp ----EEEECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEETT--------EEEEEETTTTEECSSCCCCH
T ss_pred ----EEEEEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEECC--------EEEEEeCCcceecCCCCcch
Confidence 45666643211 1 22332 233212233333 3 5899999773 68999987654221 1
Q ss_pred cc---cccCCCceeEEEE-CCEEEEEeccCCcEEEEEeCCCCceee
Q 040145 286 AV---GLREGWTGSSVVV-YEHLFVVSELERMKLKVYDPSTDSWET 327 (402)
Q Consensus 286 ~~---~~~~~~~~~~~~~-~~~l~~~gg~~~~~~~~yd~~~~~W~~ 327 (402)
.. ..+. ...++... ++++|.|-|. ..|+||..+++-..
T Consensus 314 ~~~f~g~p~-~iDaA~~~~~g~~YfFkg~---~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 314 TKNFQGIGP-KIDAVFYSKNKYYYFFQGS---NQFEYDFLLQRITK 355 (365)
T ss_dssp HHHSTTCCS-SCSEEEEETTTEEEEEETT---EEEEEETTTTEEEE
T ss_pred hhcCCCCCC-ccceeeEecCCcEEEEeCC---EEEEEECCccEEec
Confidence 10 1111 12223334 8999999765 79999998765443
No 283
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=85.85 E-value=16 Score=31.23 Aligned_cols=135 Identities=9% Similarity=-0.013 Sum_probs=68.9
Q ss_pred eEEEEECCCCceeecCCCccc-ccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE
Q 040145 175 LVLKYEMQKNRWTVMNKMITA-RSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL 252 (402)
Q Consensus 175 ~~~~~d~~t~~W~~~~~~~~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~ 252 (402)
.+.+||..|++-..+-.+... ..-.+++.. +++.++.|+. -..+.+||..+++-... +............
T Consensus 46 tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~------Dg~v~iw~~~~~~~~~~--~~~h~~~~~~~~~ 117 (318)
T 4ggc_A 46 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS------SAEVQLWDVQQQKRLRN--MTSHSARVGSLSW 117 (318)
T ss_dssp EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET------TSEEEEEETTTTEEEEE--EECCSSCEEEEEE
T ss_pred EEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEEC------CCcEEEeecCCceeEEE--ecCccceEEEeec
Confidence 799999999876543222222 112233332 5677777776 45688999988763322 1111122233444
Q ss_pred CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccCCcEEEEEeCCCCc
Q 040145 253 DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 253 ~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
++.+.+.|+.. ..+..++..+.................. ...++..++.|+. ...+.+||..+.+
T Consensus 118 ~~~~l~s~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~ 183 (318)
T 4ggc_A 118 NSYILSSGSRS------GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN-DNLVNVWPSAPGE 183 (318)
T ss_dssp ETTEEEEEETT------SEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET-TSCEEEEESSCBT
T ss_pred CCCEEEEEecC------CceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec-CcceeEEECCCCc
Confidence 56666666542 2455555554433221110111111111 2235666666665 4578889987643
No 284
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=85.72 E-value=14 Score=30.55 Aligned_cols=118 Identities=14% Similarity=0.201 Sum_probs=64.5
Q ss_pred ECCEEEEEcccccCCccCCcEEEEeCCCCCee--eccc---cccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCcee
Q 040145 252 LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWE--SMAV---GLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWE 326 (402)
Q Consensus 252 ~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~--~~~~---~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~ 326 (402)
.+|++|+|-|. ..++++.....+. .+.. .+|. ...++...++++|+|-|. .+|+|+..++ .+
T Consensus 27 ~~g~~yfFkg~--------~~Wr~~~~~~~~~p~~Is~~wpgLP~-~IDAA~~~~~~~yfFkG~---~yw~~~~~~~-~~ 93 (219)
T 1hxn_A 27 NHGATYVFSGS--------HYWRLDTNRDGWHSWPIAHQWPQGPS-TVDAAFSWEDKLYLIQDT---KVYVFLTKGG-YT 93 (219)
T ss_dssp TTSCEEEEETT--------EEEESSSSSCTTCCEEGGGTCTTSCS-SCSEEEEETTEEEEEETT---EEEEEECSSS-CE
T ss_pred CCCcEEEEeCC--------EEEEEcCCCCCCCceEhhhhccCCCC-CccEEEEECCcEEEecCC---EEEEEeCCCC-ce
Confidence 47999999773 4566664432221 1111 1222 222343458999999765 7999987532 12
Q ss_pred ecCC--------CCCCcc--c-cCCeEEEE--eCCEEEEEecCceeeeEEEEecccccccCceeeeEEEEeC-CCCCCCc
Q 040145 327 TIEG--------PPLPEQ--I-CKPFAVNA--CDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVVDA-PDNFSDL 392 (402)
Q Consensus 327 ~~~~--------~~~p~~--~-~~~~~~~~--~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W~~~~~-~~~~~~~ 392 (402)
...+ ..+|.. . +.. +++. .++++|++-|. ..|.||+... .+..|...+. |....++
T Consensus 94 ~~~gyPk~i~~~~G~p~~~~~~~ID-AA~~~~~~gk~yfFkG~------~ywr~d~~~~---P~~i~~~~~g~p~~vdAa 163 (219)
T 1hxn_A 94 LVNGYPKRLEKELGSPPVISLEAVD-AAFVCPGSSRLHIMAGR------RLWWLDLKSG---AQATWTELPWPHEKVDGA 163 (219)
T ss_dssp ECTTCCEEHHHHHCCCSSCCCSCCC-EEECCTTCCEEEEEETT------EEEEEEGGGG---GGCCCEEECCSCSCCSEE
T ss_pred ecCCCCeehhhccCCCCcccccccc-eeEEecCCCEEEEEeCC------EEEEEeCCCC---ceEhhhcCCCCCCCcCEE
Confidence 2221 124432 1 122 3332 36899999983 4688886443 5567766555 4444443
No 285
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=85.47 E-value=22 Score=32.71 Aligned_cols=79 Identities=10% Similarity=0.034 Sum_probs=42.0
Q ss_pred CCCCCeEEEEEEeC-----CCCceeEEEeecCCCcEEe-CCCCCCCCCC--CCCCceEEEEccCCEEEEEeCccCCCCCC
Q 040145 101 GFKDPWLFVFAFHK-----CTGKIQWQVLDLTHYCWHT-IPAMPCKDKV--CPHGFRCVSIPREGTLFVCGGMVSDVDCP 172 (402)
Q Consensus 101 ~~~~~~l~~~gg~~-----~~~~~~~~~~d~~~~~W~~-l~~~~~~~~~--~~~~~~~~~~~~~~~i~v~GG~~~~~~~~ 172 (402)
...+..+|+..... ......+.++|+.+.+-.. ++ ++.+.+. ...-++......+..+|+.... .
T Consensus 126 SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~------~ 198 (426)
T 3c75_H 126 AEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKNLLFYQFS------P 198 (426)
T ss_dssp CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSEEEEEECS------S
T ss_pred CCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCEEEEEecC------C
Confidence 34466788774210 0123468899999887432 21 2100000 0011333444345688887421 2
Q ss_pred CceEEEEECCCCce
Q 040145 173 LDLVLKYEMQKNRW 186 (402)
Q Consensus 173 ~~~~~~~d~~t~~W 186 (402)
.+.+.++|..+++-
T Consensus 199 ~~~VsVID~~t~kv 212 (426)
T 3c75_H 199 APAVGVVDLEGKTF 212 (426)
T ss_dssp SCEEEEEETTTTEE
T ss_pred CCeEEEEECCCCeE
Confidence 45799999999864
No 286
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=85.46 E-value=20 Score=32.20 Aligned_cols=117 Identities=9% Similarity=-0.066 Sum_probs=59.3
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCC--CCCceEEEEEC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVD--CPLDLVLKYEM 181 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~--~~~~~~~~~d~ 181 (402)
..++|+...........+.+||+.+.+-. ..++... .. +.+....+..+|+..-...... ...+.+.+||+
T Consensus 32 ~~~~yv~~~~~~~~~~~v~v~D~~t~~~~--~~i~~g~----~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 32 GRRSYINLPAHHSAIIQQWVLDAGSGSIL--GHVNGGF----LP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred CCEEEEeCCcccCCccEEEEEECCCCeEE--EEecCCC----CC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 46688875311111116899999887643 2333221 11 3344334567888753211100 12457889999
Q ss_pred CCCceee-cCCCc-ccc-----cceEEEE--ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcE
Q 040145 182 QKNRWTV-MNKMI-TAR-----SFFASGV--IGGMIYVAGGSSADLFELDSAEVLDPVKGNW 234 (402)
Q Consensus 182 ~t~~W~~-~~~~~-~~r-----~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 234 (402)
.|.+-.. ++ ++ .+| ....++. -+..+|+..... .+.+.++| .+++-
T Consensus 105 ~t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~-----~~~v~viD-~t~~~ 159 (373)
T 2mad_H 105 VTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNADLLFFQFAA-----GPAVGLVV-QGGSS 159 (373)
T ss_pred CCCcEEEEEE-CCCccccccCCCccceEECCCCCEEEEEecCC-----CCeEEEEE-CCCCE
Confidence 8865322 22 21 111 1123333 245677764210 35688999 88764
No 287
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=84.82 E-value=20 Score=31.68 Aligned_cols=234 Identities=13% Similarity=0.097 Sum_probs=113.5
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCC---CCCCCCCceEEEE--ccCCEEEEEeCc--cC----CCCCC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCK---DKVCPHGFRCVSI--PREGTLFVCGGM--VS----DVDCP 172 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~---~~~~~~~~~~~~~--~~~~~i~v~GG~--~~----~~~~~ 172 (402)
++.+|+..-. .-.+..+|+..+.-..+ ..+.. .....+..+.... -..+.|+++.-. .. .....
T Consensus 24 ~g~~~vs~l~----~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g 98 (334)
T 2p9w_A 24 RQVFYQSNLY----KGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHG 98 (334)
T ss_dssp TTEEEEEETT----TTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSS
T ss_pred CCEEEEEecc----CCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCC
Confidence 3556654322 23478899986654444 23310 0000011233331 135788885221 00 00123
Q ss_pred CceEEEEECC---CCc--eee-cCCCccc-------ccc-eEEEEE--CCEEEEEcCCCCCCCCC-CeeEEEcCCCCc--
Q 040145 173 LDLVLKYEMQ---KNR--WTV-MNKMITA-------RSF-FASGVI--GGMIYVAGGSSADLFEL-DSAEVLDPVKGN-- 233 (402)
Q Consensus 173 ~~~~~~~d~~---t~~--W~~-~~~~~~~-------r~~-~~~~~~--~~~iyv~GG~~~~~~~~-~~~~~yd~~t~~-- 233 (402)
...+.+||+. |++ |.. ++..... +.. ..-.++ +|.+||.+.. . ..++.+|+....
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~------~~~~I~rV~pdG~~~~ 172 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL------GMPAIARVSADGKTVS 172 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE------SSCEEEEECTTSCCEE
T ss_pred CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC------CCCeEEEEeCCCCEEe
Confidence 5679999988 654 432 2221111 221 222223 5799998764 3 668999997543
Q ss_pred -EEEcCCCCCCCcceeEEEE--CC-EEEEEcccccCCccCCcEEEEeCCCCCeeecccc------ccCCCcee-EEEECC
Q 040145 234 -WRTIASMGTNMASYDAAVL--DG-KLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVG------LREGWTGS-SVVVYE 302 (402)
Q Consensus 234 -W~~~~~~~~~~~~~~~~~~--~g-~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~------~~~~~~~~-~~~~~~ 302 (402)
|-.-.+....+.+....++ +| .|++..+ . ..+++||+.+....+++.. ....-.+. ..-.+|
T Consensus 173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~------g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G 245 (334)
T 2p9w_A 173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-P------RALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGN 245 (334)
T ss_dssp EEEECCCCSSSCCSCSEEEEETTTTEEEEESS-S------SSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETT
T ss_pred eeeecCCCcccccCcceEEEeCCCCEEEEEcC-C------CeEEEEcCCCCcceeecccccCCcccccCcccccccccCC
Confidence 5432222334445544444 45 4555544 2 3689999885432123211 01111221 234789
Q ss_pred EEEEEeccCCcEEEEEeCCCCceeecCCCC-CCc--cccCCeEEEE----eCCEEEEEecCc
Q 040145 303 HLFVVSELERMKLKVYDPSTDSWETIEGPP-LPE--QICKPFAVNA----CDCRVYVVGRNL 357 (402)
Q Consensus 303 ~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~-~p~--~~~~~~~~~~----~~~~i~v~GG~~ 357 (402)
+++++.......+...+. .+ |....... .|. ........+. .+++||++.+..
T Consensus 246 ~vllV~~~~~~~~~l~S~-Dg-W~sa~~~g~~~~~~~~~g~tt~t~~~~~~~~~iYvv~~~f 305 (334)
T 2p9w_A 246 ESVLVGARAPYAISFRSW-DN-WKSANIKKTKRSELQNSGFTAVADYYQGSEQGLYAVSAFF 305 (334)
T ss_dssp EEEEEEEETTEEEEEECS-ST-TSEEEEEEEECGGGGSSCEEEEEEEEETTEEEEEEEECCG
T ss_pred EEEEEEcCCCCEEEEECC-CC-cceeEEeeeecCccccCceeEEEEeccccCCeEEEEeeec
Confidence 986665543334444444 34 98654221 121 1122223333 678999998744
No 288
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=84.24 E-value=22 Score=31.48 Aligned_cols=182 Identities=10% Similarity=0.012 Sum_probs=86.0
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK 183 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t 183 (402)
.+.+.+.++.+ ..+.++|..+++-...-..+ ....++.+ ..+.+++... +.+.+||..+
T Consensus 70 ~~~~~~~~~~d----~~v~iWd~~~~~~~~~~~~~-------~~v~~v~~-~~~~~~~~~~---------~~i~i~d~~~ 128 (355)
T 3vu4_A 70 TNYVAFVTGVK----EVVHIWDDVKKQDVSRIKVD-------APVKDLFL-SREFIVVSYG---------DVISVFKFGN 128 (355)
T ss_dssp SSEEEEECSST----TEEEEEETTTTEEEEEEECS-------SCEEEEEE-CSSEEEEEET---------TEEEEEESST
T ss_pred CCEEEEEECCc----cEEEEEECCCCcEEEEEECC-------CceEEEEE-cCCEEEEEEc---------CEEEEEECCC
Confidence 34454555332 25788898877643211111 11233333 2445554432 2689999887
Q ss_pred CceeecCCCcccccceEEEEECCEEEEE-cCCCCCCCCCCeeEEEcCCCCc-EEE-------------cCCCCCCCccee
Q 040145 184 NRWTVMNKMITARSFFASGVIGGMIYVA-GGSSADLFELDSAEVLDPVKGN-WRT-------------IASMGTNMASYD 248 (402)
Q Consensus 184 ~~W~~~~~~~~~r~~~~~~~~~~~iyv~-GG~~~~~~~~~~~~~yd~~t~~-W~~-------------~~~~~~~~~~~~ 248 (402)
+. +.+..+..+ ...++...+.+.+. |+. ...+.+||..+.. +.. +..+........
T Consensus 129 ~~-~~~~~~~~~--~~~~~~s~~~la~~sg~~------~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~ 199 (355)
T 3vu4_A 129 PW-KRITDDIRF--GGVCEFSNGLLVYSNEFN------LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIK 199 (355)
T ss_dssp TC-CBSSCCEEE--EEEEEEETTEEEEEESSC------TTCEEEEECCC------------------CCEEECCCSSCEE
T ss_pred Cc-eeeEEeccC--CceEEEEccEEEEeCCCc------CcEEEEEECCCCCccccccccccccccCcccEEEEccCCceE
Confidence 61 122222221 11122223444444 443 3458889988653 110 111111112222
Q ss_pred EEEE--CCEEEEEcccccCCccCCc-EEEEeCCCCCeee-ccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCC
Q 040145 249 AAVL--DGKLLVTEGWLWPFFVSPR-GQVYDPSTDNWES-MAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPST 322 (402)
Q Consensus 249 ~~~~--~g~ly~~gG~~~~~~~~~~-~~~yd~~~~~W~~-~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~ 322 (402)
.+.+ +|.+++.|+.+ .. +..||..+++-.. +......... ..+.+ ++++++.|+. ...+.+||..+
T Consensus 200 ~~~~s~~g~~l~s~s~d------~~~v~iwd~~~~~~~~~~~~g~h~~~v-~~~~~s~~~~~l~s~s~-d~~v~iw~~~~ 271 (355)
T 3vu4_A 200 MVRLNRKSDMVATCSQD------GTIIRVFKTEDGVLVREFRRGLDRADV-VDMKWSTDGSKLAVVSD-KWTLHVFEIFN 271 (355)
T ss_dssp EEEECTTSSEEEEEETT------CSEEEEEETTTCCEEEEEECTTCCSCE-EEEEECTTSCEEEEEET-TCEEEEEESSC
T ss_pred EEEECCCCCEEEEEeCC------CCEEEEEECCCCcEEEEEEcCCCCCcE-EEEEECCCCCEEEEEEC-CCEEEEEEccC
Confidence 3333 67777777754 35 8899998764321 1100011111 12223 6777777665 46788898865
Q ss_pred C
Q 040145 323 D 323 (402)
Q Consensus 323 ~ 323 (402)
.
T Consensus 272 ~ 272 (355)
T 3vu4_A 272 D 272 (355)
T ss_dssp C
T ss_pred C
Confidence 4
No 289
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=84.13 E-value=15 Score=38.32 Aligned_cols=99 Identities=12% Similarity=-0.014 Sum_probs=56.8
Q ss_pred CeeE-EEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEE
Q 040145 222 DSAE-VLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSV 298 (402)
Q Consensus 222 ~~~~-~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~ 298 (402)
..++ +||..++.-..+. .. ........+ +|+.+++++.. ..+..+|+.+++-..+.............
T Consensus 358 ~~l~~~~d~~~~~~~~l~--~~-~~~~~~~~~SpDG~~la~~~~~------~~v~~~d~~tg~~~~~~~~~~~~v~~~~~ 428 (1045)
T 1k32_A 358 GDFLGIYDYRTGKAEKFE--EN-LGNVFAMGVDRNGKFAVVANDR------FEIMTVDLETGKPTVIERSREAMITDFTI 428 (1045)
T ss_dssp EEEEEEEETTTCCEEECC--CC-CCSEEEEEECTTSSEEEEEETT------SEEEEEETTTCCEEEEEECSSSCCCCEEE
T ss_pred CceEEEEECCCCCceEec--CC-ccceeeeEECCCCCEEEEECCC------CeEEEEECCCCceEEeccCCCCCccceEE
Confidence 4678 8899887766554 11 112222222 67766665532 37899999988766554212111122222
Q ss_pred EECCEEEEEeccC---------CcEEEEEeCCCCceeecC
Q 040145 299 VVYEHLFVVSELE---------RMKLKVYDPSTDSWETIE 329 (402)
Q Consensus 299 ~~~~~l~~~gg~~---------~~~~~~yd~~~~~W~~~~ 329 (402)
.-+|+.+++++.. ...+++||..+.+...+.
T Consensus 429 SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~ 468 (1045)
T 1k32_A 429 SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT 468 (1045)
T ss_dssp CTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS
T ss_pred CCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEee
Confidence 3367766665442 258999999987755443
No 290
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=83.90 E-value=27 Score=32.40 Aligned_cols=144 Identities=13% Similarity=0.126 Sum_probs=77.5
Q ss_pred ceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCC---------ceeecCCCcccccceEEEE--ECCEEEEEcCCCC
Q 040145 148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKN---------RWTVMNKMITARSFFASGV--IGGMIYVAGGSSA 216 (402)
Q Consensus 148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~---------~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~ 216 (402)
+.++.. ..+++|+|-|. .+|+++.... .|..+| .. .. ++.. .++++|++-|.
T Consensus 265 fDAi~~-~~ge~y~Fkg~---------~~wr~~~~~~~~~p~~I~~~Wp~LP---~~-iD-Aa~~~~~~g~~~fFKg~-- 327 (450)
T 1su3_A 265 FDAITT-IRGEVMFFKDR---------FYMRTNPFYPEVELNFISVFWPQLP---NG-LE-AAYEFADRDEVRFFKGN-- 327 (450)
T ss_dssp CSEEEE-ETTEEEEEETT---------EEEECCTTSSSCEEEEGGGTCTTSC---SS-CC-EEEEEGGGTEEEEEETT--
T ss_pred cceEEe-cCCeEEEEeCC---------EEEEEcCCCCcccceehhHhccCCC---CC-ee-EEEEEcCCCeEEEEeCC--
Confidence 445443 48999999875 4666654432 333332 21 11 2222 26889988763
Q ss_pred CCCCCCeeEEEcCCCC--cE-EEcC---CCCCCCcceeEE-EE--CCEEEEEcccccCCccCCcEEEEeCCCCCeee---
Q 040145 217 DLFELDSAEVLDPVKG--NW-RTIA---SMGTNMASYDAA-VL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES--- 284 (402)
Q Consensus 217 ~~~~~~~~~~yd~~t~--~W-~~~~---~~~~~~~~~~~~-~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~--- 284 (402)
.+++|+..+- .+ +.+. .+|.......++ .. ++++|+|-|. ..++||..+++-..
T Consensus 328 ------~~W~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG~--------~yw~yd~~~~~~~~gYP 393 (450)
T 1su3_A 328 ------KYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVAN--------KYWRYDEYKRSMDPGYP 393 (450)
T ss_dssp ------EEEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEETT--------EEEEEETTTTEECSSCS
T ss_pred ------EEEEecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeCC--------EEEEEeCCCccccCCCC
Confidence 4566654320 00 1111 123211222333 33 6899999873 68999976543221
Q ss_pred --ccc---cccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCcee
Q 040145 285 --MAV---GLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWE 326 (402)
Q Consensus 285 --~~~---~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~ 326 (402)
+.. ..+. ...++...+|++|.|-|. ..|+||..++.=.
T Consensus 394 k~I~~~fpgip~-~iDAA~~~~g~~YFFkg~---~ywr~d~~~~~v~ 436 (450)
T 1su3_A 394 KMIAHDFPGIGH-KVDAVFMKDGFFYFFHGT---RQYKFDPKTKRIL 436 (450)
T ss_dssp EEHHHHSTTSCS-CCSEEEEETTEEEEEETT---EEEEEETTTTEEE
T ss_pred cchhhcCCCCCC-CccEEEEcCCeEEEEeCC---EEEEEECCcceEe
Confidence 111 1111 122334568999999765 7999999876533
No 291
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=83.43 E-value=43 Score=34.27 Aligned_cols=152 Identities=13% Similarity=0.033 Sum_probs=75.9
Q ss_pred eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEc
Q 040145 149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLD 228 (402)
Q Consensus 149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd 228 (402)
.++++..++.+++.|+.+ ..+.+||..+..-... +.....-..++...+++++.++. -..+.++|
T Consensus 21 ~~lafspdg~~lAsgs~D-------g~I~lw~~~~~~~~~~--~~~~~~V~~l~fspg~~L~S~s~------D~~v~lWd 85 (902)
T 2oaj_A 21 IAAAFDFTQNLLAIATVT-------GEVHIYGQQQVEVVIK--LEDRSAIKEMRFVKGIYLVVINA------KDTVYVLS 85 (902)
T ss_dssp EEEEEETTTTEEEEEETT-------SEEEEECSTTCEEEEE--CSSCCCEEEEEEETTTEEEEEET------TCEEEEEE
T ss_pred EEEEECCCCCEEEEEeCC-------CEEEEEeCCCcEEEEE--cCCCCCEEEEEEcCCCEEEEEEC------cCeEEEEE
Confidence 344444466777777652 2688888766543221 11111222334344555555554 45788999
Q ss_pred CCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccc-------cccCCCcee--E
Q 040145 229 PVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV-------GLREGWTGS--S 297 (402)
Q Consensus 229 ~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~-------~~~~~~~~~--~ 297 (402)
..+.+-...-..+ ....++.+ ++..++.|+.+ ..+..||+.+..-..... .......+. +
T Consensus 86 ~~~~~~~~~~~~~---~~V~~v~~sp~g~~l~sgs~d------g~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~s 156 (902)
T 2oaj_A 86 LYSQKVLTTVFVP---GKITSIDTDASLDWMLIGLQN------GSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVS 156 (902)
T ss_dssp TTTCSEEEEEECS---SCEEEEECCTTCSEEEEEETT------SCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCE
T ss_pred CCCCcEEEEEcCC---CCEEEEEECCCCCEEEEEcCC------CcEEEEECCCCccccceeccccccccccccCCCCeEE
Confidence 9876532111111 11222222 56666666543 368899988765321110 001111111 2
Q ss_pred EEE---CCEEEEEeccCCcEEEEEeCCCCcee
Q 040145 298 VVV---YEHLFVVSELERMKLKVYDPSTDSWE 326 (402)
Q Consensus 298 ~~~---~~~l~~~gg~~~~~~~~yd~~~~~W~ 326 (402)
+.+ ++.++++|+. ...+ .||..++.-.
T Consensus 157 l~~sp~~~~~l~~g~~-dg~v-lWd~~~~~~~ 186 (902)
T 2oaj_A 157 IQWNPRDIGTVLISYE-YVTL-TYSLVENEIK 186 (902)
T ss_dssp EEEETTEEEEEEEECS-SCEE-EEETTTTEEE
T ss_pred EEEccCCCCEEEEEeC-CCcE-EEECCCCceE
Confidence 233 2356666654 4567 9999887543
No 292
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=83.40 E-value=26 Score=31.78 Aligned_cols=80 Identities=11% Similarity=-0.031 Sum_probs=43.7
Q ss_pred CCCCCeEEEEEEeC-----CCCceeEEEeecCCCcEEeCCCCCC-CC-CCCCCCceEEEEccCCEEEEEeCccCCCCCCC
Q 040145 101 GFKDPWLFVFAFHK-----CTGKIQWQVLDLTHYCWHTIPAMPC-KD-KVCPHGFRCVSIPREGTLFVCGGMVSDVDCPL 173 (402)
Q Consensus 101 ~~~~~~l~~~gg~~-----~~~~~~~~~~d~~~~~W~~l~~~~~-~~-~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~ 173 (402)
...+..+|+..... ......+.++|+.+.+-..--+++. ++ ..-..-++.+....+..+|+.... ..
T Consensus 86 spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~------~~ 159 (386)
T 3sjl_D 86 ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS------PA 159 (386)
T ss_dssp CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS------SS
T ss_pred CCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC------CC
Confidence 34567788875311 0123458899999887432111221 00 000122444554446678887432 24
Q ss_pred ceEEEEECCCCce
Q 040145 174 DLVLKYEMQKNRW 186 (402)
Q Consensus 174 ~~~~~~d~~t~~W 186 (402)
+.+.++|..+++-
T Consensus 160 ~~VsVID~~t~~v 172 (386)
T 3sjl_D 160 PAVGVVDLEGKAF 172 (386)
T ss_dssp CEEEEEETTTTEE
T ss_pred CeEEEEECCCCcE
Confidence 5899999999864
No 293
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=83.18 E-value=18 Score=29.63 Aligned_cols=104 Identities=13% Similarity=0.087 Sum_probs=57.1
Q ss_pred EEEECCEEEEEcccccCCccCCcEEEEeCCCCCeee--ccc---cccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCC
Q 040145 249 AAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES--MAV---GLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPS 321 (402)
Q Consensus 249 ~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~--~~~---~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~ 321 (402)
.+..+|++|+|-|. .+++++.....+.. +.. .+|. ...++... ++++|+|-|. .+|+|+..
T Consensus 29 i~~~~g~~y~Fkg~--------~~wr~~~~~~~~~p~~I~~~wp~Lp~-~iDAa~~~~~~~~iyfFkG~---~~w~~~~~ 96 (207)
T 1pex_A 29 ITSLRGETMIFKDR--------FFWRLHPQQVDAELFLTKSFWPELPN-RIDAAYEHPSHDLIFIFRGR---KFWALNGY 96 (207)
T ss_dssp EEEETTEEEEEETT--------EEEEECSSSSCCEEEEHHHHCTTSCS-SCCEEEEETTTTEEEEEETT---EEEEESTT
T ss_pred EEeCCCcEEEEECC--------EEEEEeCCCcCCCceehhHhccCCCC-CccEEEEeccCCcEEEEccC---EEEEEeCC
Confidence 44579999999773 56777765443322 111 1222 22233233 6999999775 78999754
Q ss_pred CCce---eecCCCCCCccc-cCCeEEEEe-CCEEEEEecCceeeeEEEEecccc
Q 040145 322 TDSW---ETIEGPPLPEQI-CKPFAVNAC-DCRVYVVGRNLHVAVGHITRLSTS 370 (402)
Q Consensus 322 ~~~W---~~~~~~~~p~~~-~~~~~~~~~-~~~i~v~GG~~~~~~~~v~~~~~~ 370 (402)
+..- +.|..+.+|... ...+++... ++++|++-|. ..|.||..
T Consensus 97 ~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG~------~ywr~d~~ 144 (207)
T 1pex_A 97 DILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGN------QVWRYDDT 144 (207)
T ss_dssp CCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEETT------EEEEEETT
T ss_pred eeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeCC------EEEEEeCc
Confidence 3211 123323344321 222233222 5899999883 46778754
No 294
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=82.75 E-value=24 Score=30.90 Aligned_cols=151 Identities=8% Similarity=-0.053 Sum_probs=83.4
Q ss_pred eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeec--CCCcccccceEEEE--ECCEEEEEcCCCCCCCCCCee
Q 040145 149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVM--NKMITARSFFASGV--IGGMIYVAGGSSADLFELDSA 224 (402)
Q Consensus 149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~--~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~ 224 (402)
+.++-..++.||+.-.. ...++++++....-+.+ ..+..| .+.++ .++.||+.--. . ...+
T Consensus 83 glavd~~~g~ly~~d~~-------~~~I~~~~~dG~~~~~l~~~~~~~P---~giavdp~~g~ly~td~~----~-~~~I 147 (318)
T 3sov_A 83 GLACDWLGEKLYWTDSE-------TNRIEVSNLDGSLRKVLFWQELDQP---RAIALDPSSGFMYWTDWG----E-VPKI 147 (318)
T ss_dssp EEEEETTTTEEEEEETT-------TTEEEEEETTSCSCEEEECSSCSSE---EEEEEEGGGTEEEEEECS----S-SCEE
T ss_pred EEEEEcCCCeEEEEECC-------CCEEEEEECCCCcEEEEEeCCCCCc---cEEEEeCCCCEEEEEecC----C-CCEE
Confidence 44443347899987543 34789999875433332 222222 23333 25789987521 1 4578
Q ss_pred EEEcCCCCcEEEcCCCCCCCcce-eEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEEC
Q 040145 225 EVLDPVKGNWRTIASMGTNMASY-DAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVY 301 (402)
Q Consensus 225 ~~yd~~t~~W~~~~~~~~~~~~~-~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~ 301 (402)
+++++....-+.+.. ...... +.++- ++.||+.-.. ...++++|+....-+.+.. .....-...++.+
T Consensus 148 ~r~~~dG~~~~~~~~--~~l~~Pnglavd~~~~~lY~aD~~------~~~I~~~d~dG~~~~~~~~-~~~~~P~glav~~ 218 (318)
T 3sov_A 148 ERAGMDGSSRFIIIN--SEIYWPNGLTLDYEEQKLYWADAK------LNFIHKSNLDGTNRQAVVK-GSLPHPFALTLFE 218 (318)
T ss_dssp EEEETTSCSCEEEEC--SSCSCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEEC-SCCSCEEEEEEET
T ss_pred EEEEcCCCCeEEEEE--CCCCCccEEEEeccCCEEEEEECC------CCEEEEEcCCCCceEEEec-CCCCCceEEEEeC
Confidence 888886433222211 111122 23332 6889998542 3579999987543333322 1111112234578
Q ss_pred CEEEEEeccCCcEEEEEeCCCCc
Q 040145 302 EHLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 302 ~~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
+.+|+..- ....|.++|+.+.+
T Consensus 219 ~~lywtd~-~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 219 DILYWTDW-STHSILACNKYTGE 240 (318)
T ss_dssp TEEEEEET-TTTEEEEEETTTCC
T ss_pred CEEEEEec-CCCeEEEEECCCCC
Confidence 89998843 46789999996554
No 295
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=82.14 E-value=25 Score=30.75 Aligned_cols=181 Identities=12% Similarity=0.112 Sum_probs=100.1
Q ss_pred cCCEEEEEeCccCCCCCCCceEEEEECCCCc---eeecCCCcccccceEEEE--ECCEEEEEcCCCCCCCCCCeeEEEcC
Q 040145 155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNR---WTVMNKMITARSFFASGV--IGGMIYVAGGSSADLFELDSAEVLDP 229 (402)
Q Consensus 155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~---W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~ 229 (402)
.++.||..--. ...++++++.... +.....+. ...++++ .++.||+.-.. ...++++++
T Consensus 45 ~~~~lyw~D~~-------~~~I~r~~~~g~~~~~~~~~~~l~---~p~glavd~~~g~ly~~d~~------~~~I~~~~~ 108 (318)
T 3sov_A 45 SHGLIYWSDVS-------EEAIKRTEFNKTESVQNVVVSGLL---SPDGLACDWLGEKLYWTDSE------TNRIEVSNL 108 (318)
T ss_dssp GGTEEEEEETT-------TTEEEEEETTSSSCCCEEEEECCS---CCCEEEEETTTTEEEEEETT------TTEEEEEET
T ss_pred CCCEEEEEECC-------CCcEEEEEccCCCceEEEEcCCCC---CccEEEEEcCCCeEEEEECC------CCEEEEEEC
Confidence 36789988532 3478999987653 11111111 2224444 47899998543 467889988
Q ss_pred CCCcEEEc--CCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCc-eeEEE-ECCE
Q 040145 230 VKGNWRTI--ASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWT-GSSVV-VYEH 303 (402)
Q Consensus 230 ~t~~W~~~--~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~-~~~~~-~~~~ 303 (402)
....-+.+ ..+..| .+.++- +|.||+.--. ....++++++....-..+.. ....+. +.++- .+++
T Consensus 109 dG~~~~~l~~~~~~~P---~giavdp~~g~ly~td~~-----~~~~I~r~~~dG~~~~~~~~-~~l~~Pnglavd~~~~~ 179 (318)
T 3sov_A 109 DGSLRKVLFWQELDQP---RAIALDPSSGFMYWTDWG-----EVPKIERAGMDGSSRFIIIN-SEIYWPNGLTLDYEEQK 179 (318)
T ss_dssp TSCSCEEEECSSCSSE---EEEEEEGGGTEEEEEECS-----SSCEEEEEETTSCSCEEEEC-SSCSCEEEEEEETTTTE
T ss_pred CCCcEEEEEeCCCCCc---cEEEEeCCCCEEEEEecC-----CCCEEEEEEcCCCCeEEEEE-CCCCCccEEEEeccCCE
Confidence 75443333 222222 122332 5889987521 12478999986433222211 111111 22222 2788
Q ss_pred EEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEeccc
Q 040145 304 LFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 304 l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~ 369 (402)
||+.-.. ...|+++|++...-..+.. .......++++.++.||+.--..+ .|+.+++
T Consensus 180 lY~aD~~-~~~I~~~d~dG~~~~~~~~----~~~~~P~glav~~~~lywtd~~~~----~V~~~~~ 236 (318)
T 3sov_A 180 LYWADAK-LNFIHKSNLDGTNRQAVVK----GSLPHPFALTLFEDILYWTDWSTH----SILACNK 236 (318)
T ss_dssp EEEEETT-TTEEEEEETTSCSCEEEEC----SCCSCEEEEEEETTEEEEEETTTT----EEEEEET
T ss_pred EEEEECC-CCEEEEEcCCCCceEEEec----CCCCCceEEEEeCCEEEEEecCCC----eEEEEEC
Confidence 9988543 6789999997544333321 112345688888999999853322 3666665
No 296
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=81.74 E-value=19 Score=35.33 Aligned_cols=104 Identities=9% Similarity=-0.099 Sum_probs=51.2
Q ss_pred eEEEEECCCCceeecCCCccc--ccceEEEEE-CCEEEEEcCCCCCC---CCCCeeEEEcCCCCcEEEcCCCCCCCc--c
Q 040145 175 LVLKYEMQKNRWTVMNKMITA--RSFFASGVI-GGMIYVAGGSSADL---FELDSAEVLDPVKGNWRTIASMGTNMA--S 246 (402)
Q Consensus 175 ~~~~~d~~t~~W~~~~~~~~~--r~~~~~~~~-~~~iyv~GG~~~~~---~~~~~~~~yd~~t~~W~~~~~~~~~~~--~ 246 (402)
.++++|..+++-+.+-..... ......+.. +++.++++..+... .....++++|..+++-+.+........ .
T Consensus 38 ~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~ 117 (723)
T 1xfd_A 38 TVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQ 117 (723)
T ss_dssp CEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCS
T ss_pred CEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcccccccc
Confidence 788999988865443221111 011233332 55544444332211 113678999999887665543322111 1
Q ss_pred eeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeec
Q 040145 247 YDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESM 285 (402)
Q Consensus 247 ~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~ 285 (402)
.....-+|+.++++.. ..++++|..+++-..+
T Consensus 118 ~~~~SPdG~~la~~~~-------~~i~~~~~~~g~~~~~ 149 (723)
T 1xfd_A 118 YAGWGPKGQQLIFIFE-------NNIYYCAHVGKQAIRV 149 (723)
T ss_dssp BCCBCSSTTCEEEEET-------TEEEEESSSSSCCEEE
T ss_pred ccEECCCCCEEEEEEC-------CeEEEEECCCCceEEE
Confidence 1112225544444332 2577788777655544
No 297
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=81.64 E-value=30 Score=31.18 Aligned_cols=247 Identities=13% Similarity=0.098 Sum_probs=122.0
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCC-CCCCCCC------CCceEEEEcc---CCEEEEEeCccCCCCCCC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMP-CKDKVCP------HGFRCVSIPR---EGTLFVCGGMVSDVDCPL 173 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~-~~~~~~~------~~~~~~~~~~---~~~i~v~GG~~~~~~~~~ 173 (402)
.+.+|+.+.... ....+++.+-...+|+.+.... .+..... ......++.. .+.||+.+. .
T Consensus 67 ~~~l~~g~~~g~-~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~--------~ 137 (394)
T 3b7f_A 67 PERMLMAARTGH-LGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS--------P 137 (394)
T ss_dssp TTCEEEEEEC---CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE--------T
T ss_pred CCeEEEEecCCC-CCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEec--------C
Confidence 466777653211 1123666766778899876321 1110000 0111222311 467776542 1
Q ss_pred ceEEEEECCCCceeecCCC---cc--------------cccceEEEEE---CCEEEEEcCCCCCCCCCCeeEEEcCCCCc
Q 040145 174 DLVLKYEMQKNRWTVMNKM---IT--------------ARSFFASGVI---GGMIYVAGGSSADLFELDSAEVLDPVKGN 233 (402)
Q Consensus 174 ~~~~~~d~~t~~W~~~~~~---~~--------------~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 233 (402)
..+++.+-...+|+.+..+ |. ....+.+.+. .+.||+... ...+++.+-...+
T Consensus 138 ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~-------~ggl~~s~DgG~t 210 (394)
T 3b7f_A 138 QGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS-------SGGVFESTDAGTD 210 (394)
T ss_dssp TEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE-------TBEEEEESSTTSS
T ss_pred CcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC-------CCCEEEECCCCCC
Confidence 2588887777899987432 11 1112233332 256777643 2346777777788
Q ss_pred EEEcCCC------CCC-----CcceeEEEE-C--CEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCC--CceeE
Q 040145 234 WRTIASM------GTN-----MASYDAAVL-D--GKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREG--WTGSS 297 (402)
Q Consensus 234 W~~~~~~------~~~-----~~~~~~~~~-~--g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~--~~~~~ 297 (402)
|+.+... |.. ...+..+.. + +.||+... ..+++++....+|+.+...++.. .....
T Consensus 211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~--------~gl~~s~D~G~tW~~~~~~l~~~~~~~~~~ 282 (394)
T 3b7f_A 211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH--------CGIYRMDRREGVWKRIGDAMPREVGDIGFP 282 (394)
T ss_dssp CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET--------TEEEEEETTTTEEECGGGGSCTTTCSCEEE
T ss_pred ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC--------CeEEEeCCCCCcceECCCCCCCCCccceEE
Confidence 9987531 111 112223332 2 66777432 25788888888999987534431 22223
Q ss_pred EEE----CCEEEEEecc-----------CCcEEEEEeCCCCceeecCCCCCCcccc----CCeEEEE--eC-CEEEEEec
Q 040145 298 VVV----YEHLFVVSEL-----------ERMKLKVYDPSTDSWETIEGPPLPEQIC----KPFAVNA--CD-CRVYVVGR 355 (402)
Q Consensus 298 ~~~----~~~l~~~gg~-----------~~~~~~~yd~~~~~W~~~~~~~~p~~~~----~~~~~~~--~~-~~i~v~GG 355 (402)
+.. .+.||+.... ....+++-.-...+|+.+.. .+|.... ...++++ .+ +.||+. +
T Consensus 283 i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~-glp~~~~~~~~~~~~~~~~p~~~~~l~~g-~ 360 (394)
T 3b7f_A 283 IVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDR-GLPTDQAWLTVKRQAMTADAHAPVGVYFG-T 360 (394)
T ss_dssp EEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECB-TSCCSSCCCCCCTBSEEECCSSSCCEEEE-C
T ss_pred EEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCC-CCCCccccceEEEEEEEECCCCCCEEEEE-e
Confidence 333 4678876311 11234443333468998863 3443211 1122333 23 457754 3
Q ss_pred CceeeeEEEEecccccccCceeeeEEEEeCC
Q 040145 356 NLHVAVGHITRLSTSEKKWSFSVQWQVVDAP 386 (402)
Q Consensus 356 ~~~~~~~~v~~~~~~~~~~~~~~~W~~~~~~ 386 (402)
.. ..++.-..... +|+++...
T Consensus 361 ~~----g~l~~S~D~G~------tW~~~~~~ 381 (394)
T 3b7f_A 361 TG----GEIWASADEGE------HWQCIASH 381 (394)
T ss_dssp TT----SCEEEESSTTS------BCEEEECS
T ss_pred CC----CeEEEECCCCC------CceEcccC
Confidence 21 22555543333 88888753
No 298
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=81.08 E-value=22 Score=29.42 Aligned_cols=106 Identities=11% Similarity=0.089 Sum_probs=60.3
Q ss_pred ceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCc--eeec----------CCCccc--ccceEEEE---ECCEEEE
Q 040145 148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVM----------NKMITA--RSFFASGV---IGGMIYV 210 (402)
Q Consensus 148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~----------~~~~~~--r~~~~~~~---~~~~iyv 210 (402)
..++.....+++|++-|. .+|+||..+++ -... +.+|.. ...--++. .++++|+
T Consensus 62 iDAa~~~~~g~~~fFkg~---------~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yf 132 (225)
T 3oyo_A 62 IDCSFHTEASEAYVFSGN---------HSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYL 132 (225)
T ss_dssp CSEEEECSTTEEEEEETT---------EEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEE
T ss_pred EeEEEEcCCCeEEEEcCC---------EEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEE
Confidence 344443258999999875 78899764431 1111 122220 00222332 2689999
Q ss_pred EcCCCCCCCCCCeeEEEcCCCCcEEE----cC-CCCCC-----CcceeEEEE---CCEEEEEcccccCCccCCcEEEEeC
Q 040145 211 AGGSSADLFELDSAEVLDPVKGNWRT----IA-SMGTN-----MASYDAAVL---DGKLLVTEGWLWPFFVSPRGQVYDP 277 (402)
Q Consensus 211 ~GG~~~~~~~~~~~~~yd~~t~~W~~----~~-~~~~~-----~~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~yd~ 277 (402)
+-| +..+.||..+++... +. ..|.. .....++.. ++++|++-|. ..++||.
T Consensus 133 FkG--------~~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG~--------~ywr~d~ 196 (225)
T 3oyo_A 133 FKG--------NKYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKGQ--------NYVRIDF 196 (225)
T ss_dssp EET--------TEEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEETT--------EEEEEEC
T ss_pred EeC--------CeEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEECC--------EEEEEeC
Confidence 987 357899977665443 11 12221 122334433 7899999874 6899998
Q ss_pred C
Q 040145 278 S 278 (402)
Q Consensus 278 ~ 278 (402)
.
T Consensus 197 ~ 197 (225)
T 3oyo_A 197 T 197 (225)
T ss_dssp C
T ss_pred C
Confidence 7
No 299
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=79.72 E-value=49 Score=32.51 Aligned_cols=208 Identities=11% Similarity=0.067 Sum_probs=103.7
Q ss_pred ceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccc-cceEEEEECC-EEEEEcCCCCC------CC
Q 040145 148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITAR-SFFASGVIGG-MIYVAGGSSAD------LF 219 (402)
Q Consensus 148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r-~~~~~~~~~~-~iyv~GG~~~~------~~ 219 (402)
.+...+..+++.++++-.... .....++++|..|++..... ++..+ ...+.. ++ .||........ ..
T Consensus 131 l~~~~~SpDg~~lAy~~~~~G--~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws--Dg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 131 LDQLSFSRDGRILAYSLSLAG--SDWREIHLMDVESKQPLETP-LKDVKFSGISWL--GNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp EEEEEECTTSSEEEEEEECSS--CCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE--TTTEEEEEESSCCC-------C
T ss_pred EEEEEECCCCCEEEEEEecCC--CceEEEEEEECCCCCCCccc-cCCceeccEEEe--CCCEEEEEEecCcccccccccC
Confidence 344455567765555322111 12358999999999865541 11111 122223 54 45544332110 01
Q ss_pred CCCeeEEEcCCCCcE--EEcCCCCC--CCcceeE-EEECCEEEEEcccccCCccCCcEEEEeCCCC--CeeeccccccCC
Q 040145 220 ELDSAEVLDPVKGNW--RTIASMGT--NMASYDA-AVLDGKLLVTEGWLWPFFVSPRGQVYDPSTD--NWESMAVGLREG 292 (402)
Q Consensus 220 ~~~~~~~yd~~t~~W--~~~~~~~~--~~~~~~~-~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~ 292 (402)
....++.++..+..= ..+-..+. +...... ..-+|+..++....+. ..+.++.+|..+. .|..+.... ..
T Consensus 206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~--~~~~i~~~d~~~~~~~~~~l~~~~-~~ 282 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST--SGNRLYVKDLSQENAPLLTVQGDL-DA 282 (693)
T ss_dssp CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS--SCCEEEEEETTSTTCCCEEEECSS-SS
T ss_pred CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC--CCcEEEEEECCCCCCceEEEeCCC-Cc
Confidence 145678887776542 12222222 1112222 2236664444322111 1247899998765 677775422 11
Q ss_pred CceeEEEECCEEEEEeccC--CcEEEEEeCCCC---ceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEec
Q 040145 293 WTGSSVVVYEHLFVVSELE--RMKLKVYDPSTD---SWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRL 367 (402)
Q Consensus 293 ~~~~~~~~~~~l~~~gg~~--~~~~~~yd~~~~---~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~ 367 (402)
.......-++.+|+....+ ...++.+|..+. .|+.+. +-... .. .....++.|++..-.+ ....++.+
T Consensus 283 ~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~--~~-~~s~~g~~lv~~~~~~--g~~~l~~~ 355 (693)
T 3iuj_A 283 DVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI--PERQQ--VL-TVHSGSGYLFAEYMVD--ATARVEQF 355 (693)
T ss_dssp CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--CCCSS--CE-EEEEETTEEEEEEEET--TEEEEEEE
T ss_pred eEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe--cCCCC--EE-EEEEECCEEEEEEEEC--CeeEEEEE
Confidence 1222234578898887544 468999998763 488764 22221 12 4555667766654322 22346666
Q ss_pred ccc
Q 040145 368 STS 370 (402)
Q Consensus 368 ~~~ 370 (402)
+..
T Consensus 356 d~~ 358 (693)
T 3iuj_A 356 DYE 358 (693)
T ss_dssp CTT
T ss_pred ECC
Confidence 543
No 300
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=79.02 E-value=26 Score=28.91 Aligned_cols=144 Identities=14% Similarity=0.216 Sum_probs=77.7
Q ss_pred CceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCce--eec----CCCcccccceEEEEECCEEEEEcCCCCCCCC
Q 040145 147 GFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRW--TVM----NKMITARSFFASGVIGGMIYVAGGSSADLFE 220 (402)
Q Consensus 147 ~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W--~~~----~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~ 220 (402)
.+.++....++++|++-|. .+|+++...... ..+ +.+|.. .. ++...++++|++-|
T Consensus 19 ~~DAi~~~~~g~~yfFkg~---------~~Wr~~~~~~~~~p~~Is~~wpgLP~~-ID-AA~~~~~~~yfFkG------- 80 (219)
T 1hxn_A 19 VLSAMVSDNHGATYVFSGS---------HYWRLDTNRDGWHSWPIAHQWPQGPST-VD-AAFSWEDKLYLIQD------- 80 (219)
T ss_dssp CCCEEEECTTSCEEEEETT---------EEEESSSSSCTTCCEEGGGTCTTSCSS-CS-EEEEETTEEEEEET-------
T ss_pred CEeEEEECCCCcEEEEeCC---------EEEEEcCCCCCCCceEhhhhccCCCCC-cc-EEEEECCcEEEecC-------
Confidence 3555554357899999775 567776543211 111 123321 11 23334899999976
Q ss_pred CCeeEEEcCCCCc-----E-EEcC---CCCCC--CcceeEEE-E--CCEEEEEcccccCCccCCcEEEEeCCCC---Cee
Q 040145 221 LDSAEVLDPVKGN-----W-RTIA---SMGTN--MASYDAAV-L--DGKLLVTEGWLWPFFVSPRGQVYDPSTD---NWE 283 (402)
Q Consensus 221 ~~~~~~yd~~t~~-----W-~~~~---~~~~~--~~~~~~~~-~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~---~W~ 283 (402)
+.+++|+..++. + +.+. .+|.. .....+++ . ++++|+|-|. ..+.||..+. .|.
T Consensus 81 -~~yw~~~~~~~~~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG~--------~ywr~d~~~~P~~i~~ 151 (219)
T 1hxn_A 81 -TKVYVFLTKGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAGR--------RLWWLDLKSGAQATWT 151 (219)
T ss_dssp -TEEEEEECSSSCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEETT--------EEEEEEGGGGGGCCCE
T ss_pred -CEEEEEeCCCCceecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeCC--------EEEEEeCCCCceEhhh
Confidence 357888865321 0 1111 23332 12233444 2 6899999874 6789997542 333
Q ss_pred eccccccCCCceeEEE------------ECCEEEEEeccCCcEEEEEeCCC
Q 040145 284 SMAVGLREGWTGSSVV------------VYEHLFVVSELERMKLKVYDPST 322 (402)
Q Consensus 284 ~~~~~~~~~~~~~~~~------------~~~~l~~~gg~~~~~~~~yd~~~ 322 (402)
..+. ++.. ..++.. .++.+|.+-|. ..++||..+
T Consensus 152 ~~~g-~p~~-vdAa~~~~~~~~~~~~~~~~~~~YFFkg~---~y~r~~~~~ 197 (219)
T 1hxn_A 152 ELPW-PHEK-VDGALCMEKPLGPNSCSTSGPNLYLIHGP---NLYCYRHVD 197 (219)
T ss_dssp EECC-SCSC-CSEEEEESSCSSSCCSCSSSCEEEEEETT---EEEEESSHH
T ss_pred cCCC-CCCC-cCEEEEccccccccceeccCCeEEEEECC---EEEEEeCCc
Confidence 2221 1222 222222 34679999765 788888754
No 301
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=78.81 E-value=65 Score=33.42 Aligned_cols=136 Identities=14% Similarity=-0.027 Sum_probs=69.3
Q ss_pred CeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEE-EEeCCCCCeeeccccccCCCceeE-EE
Q 040145 222 DSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQ-VYDPSTDNWESMAVGLREGWTGSS-VV 299 (402)
Q Consensus 222 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~-~yd~~~~~W~~~~~~~~~~~~~~~-~~ 299 (402)
..++++|..+.....+...+.......... +|+.+++++. ...++ .||..+++-..+.. .. ...... ..
T Consensus 317 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~------~~~l~~~~d~~~~~~~~l~~-~~-~~~~~~~~S 387 (1045)
T 1k32_A 317 GQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR------EGDFLGIYDYRTGKAEKFEE-NL-GNVFAMGVD 387 (1045)
T ss_dssp TEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEET------TEEEEEEEETTTCCEEECCC-CC-CSEEEEEEC
T ss_pred CEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEEC------CCceEEEEECCCCCceEecC-Cc-cceeeeEEC
Confidence 467888887776555433222111111122 5654444332 13678 89998876655541 11 111111 22
Q ss_pred ECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCce------eeeEEEEecccc
Q 040145 300 VYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLH------VAVGHITRLSTS 370 (402)
Q Consensus 300 ~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~------~~~~~v~~~~~~ 370 (402)
-+|+.++++.. ...++++|.++.+-..+.. .. ...........+|+.+++++... ....+++.+|..
T Consensus 388 pDG~~la~~~~-~~~v~~~d~~tg~~~~~~~--~~-~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 388 RNGKFAVVAND-RFEIMTVDLETGKPTVIER--SR-EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp TTSSEEEEEET-TSEEEEEETTTCCEEEEEE--CS-SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred CCCCEEEEECC-CCeEEEEECCCCceEEecc--CC-CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence 36776666654 4589999999887665531 11 00112223345666555554322 223456666653
No 302
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=78.21 E-value=43 Score=31.04 Aligned_cols=142 Identities=14% Similarity=0.092 Sum_probs=74.5
Q ss_pred EEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEE--Ec----CCCCCCCcceeEEE---ECCEEEEEcccccCCccCC
Q 040145 200 ASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWR--TI----ASMGTNMASYDAAV---LDGKLLVTEGWLWPFFVSP 270 (402)
Q Consensus 200 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~--~~----~~~~~~~~~~~~~~---~~g~ly~~gG~~~~~~~~~ 270 (402)
+++.+++.+|++-|. ..+.++.....+. .| +.+|. ...++. .+|++|+|-|.
T Consensus 267 Ai~~~~ge~y~Fkg~--------~~wr~~~~~~~~~p~~I~~~Wp~LP~---~iDAa~~~~~~g~~~fFKg~-------- 327 (450)
T 1su3_A 267 AITTIRGEVMFFKDR--------FYMRTNPFYPEVELNFISVFWPQLPN---GLEAAYEFADRDEVRFFKGN-------- 327 (450)
T ss_dssp EEEEETTEEEEEETT--------EEEECCTTSSSCEEEEGGGTCTTSCS---SCCEEEEEGGGTEEEEEETT--------
T ss_pred eEEecCCeEEEEeCC--------EEEEEcCCCCcccceehhHhccCCCC---CeeEEEEEcCCCeEEEEeCC--------
Confidence 455689999999874 3444444332221 12 12332 223333 26999999774
Q ss_pred cEEEEeCCCCC--e-eecc--ccccC--CCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCcee-----ecC-C-CCCC
Q 040145 271 RGQVYDPSTDN--W-ESMA--VGLRE--GWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWE-----TIE-G-PPLP 334 (402)
Q Consensus 271 ~~~~yd~~~~~--W-~~~~--~~~~~--~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~-----~~~-~-~~~p 334 (402)
..++|+..+-. + ..+. ...|. ....++... ++++|+|-|. ..|+||..+++-. .+. . ..+|
T Consensus 328 ~~W~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG~---~yw~yd~~~~~~~~gYPk~I~~~fpgip 404 (450)
T 1su3_A 328 KYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVAN---KYWRYDEYKRSMDPGYPKMIAHDFPGIG 404 (450)
T ss_dssp EEEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEETT---EEEEEETTTTEECSSCSEEHHHHSTTSC
T ss_pred EEEEecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeCC---EEEEEeCCCccccCCCCcchhhcCCCCC
Confidence 56777643210 0 1111 01121 112233233 6999999764 8999998754211 111 0 0122
Q ss_pred ccccCCeEEEEeCCEEEEEecCceeeeEEEEecccccc
Q 040145 335 EQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEK 372 (402)
Q Consensus 335 ~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~ 372 (402)
. ... +++..++++|++-|. ..|.||+...
T Consensus 405 ~--~iD-AA~~~~g~~YFFkg~------~ywr~d~~~~ 433 (450)
T 1su3_A 405 H--KVD-AVFMKDGFFYFFHGT------RQYKFDPKTK 433 (450)
T ss_dssp S--CCS-EEEEETTEEEEEETT------EEEEEETTTT
T ss_pred C--Ccc-EEEEcCCeEEEEeCC------EEEEEECCcc
Confidence 1 222 444578999999883 4778876444
No 303
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=78.02 E-value=26 Score=32.26 Aligned_cols=135 Identities=14% Similarity=0.178 Sum_probs=71.0
Q ss_pred CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCE-EEEEcccccCCccCCcEEEEeCCCCC
Q 040145 205 GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGK-LLVTEGWLWPFFVSPRGQVYDPSTDN 281 (402)
Q Consensus 205 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~-ly~~gG~~~~~~~~~~~~~yd~~~~~ 281 (402)
++.||++--. ..+.+||+.++..+.+.. .......+.+ +|+ ||+.....+. ....++.++.. +.
T Consensus 149 ~g~Lyv~d~~-------~~I~~id~~~~~v~~~~~---~~~~P~~ia~d~~G~~lyvad~~~~~--~~~~v~~~~~~-g~ 215 (430)
T 3tc9_A 149 HNHLYLVGEQ-------HPTRLIDFEKEYVSTVYS---GLSKVRTICWTHEADSMIITNDQNNN--DRPNNYILTRE-SG 215 (430)
T ss_dssp EEEEEEEEBT-------EEEEEEETTTTEEEEEEC---CCSCEEEEEECTTSSEEEEEECCSCT--TSEEEEEEEGG-GT
T ss_pred CCeEEEEeCC-------CcEEEEECCCCEEEEEec---CCCCcceEEEeCCCCEEEEEeCCCCc--ccceEEEEeCC-Cc
Confidence 4788988531 578999999988777643 1122333333 454 8887653221 11245666643 34
Q ss_pred ee---eccccccCCCceeEEEE-CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE-eCC-EEEEEec
Q 040145 282 WE---SMAVGLREGWTGSSVVV-YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA-CDC-RVYVVGR 355 (402)
Q Consensus 282 W~---~~~~~~~~~~~~~~~~~-~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~-~i~v~GG 355 (402)
|. .+.. ...+ .+.++.- ++.||+..- ....|++||+++..-..+.. .+.. .....+++ .++ .||+.--
T Consensus 216 ~~~~~~l~~-~~~p-~giavdp~~g~lyv~d~-~~~~V~~~~~~~~~~~~~~~--~~~~-~~P~gia~~pdG~~lyv~d~ 289 (430)
T 3tc9_A 216 FKVITELTK-GQNC-NGAETHPINGELYFNSW-NAGQVFRYDFTTQETTPLFT--IQDS-GWEFHIQFHPSGNYAYIVVV 289 (430)
T ss_dssp SCSEEEEEE-CSSC-CCEEECTTTCCEEEEET-TTTEEEEEETTTTEEEEEEE--CSSS-SCCEEEEECTTSSEEEEEET
T ss_pred eeeeeeecc-CCCc-eEEEEeCCCCEEEEEEC-CCCEEEEEECCCCcEEEEEE--cCCC-CcceeEEEcCCCCEEEEEEC
Confidence 43 2221 1111 1112222 688888743 35689999998775433321 2111 12234443 344 4888865
Q ss_pred Cce
Q 040145 356 NLH 358 (402)
Q Consensus 356 ~~~ 358 (402)
..+
T Consensus 290 ~~~ 292 (430)
T 3tc9_A 290 NQH 292 (430)
T ss_dssp TTT
T ss_pred CCC
Confidence 443
No 304
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=77.38 E-value=40 Score=30.21 Aligned_cols=70 Identities=9% Similarity=-0.021 Sum_probs=39.9
Q ss_pred CCEEEEEcccccC---CccCCcEEEEeCCCCCe-eeccccccCCCceeEEEECCE-EEEEeccCCcEEEEEeCCCCc
Q 040145 253 DGKLLVTEGWLWP---FFVSPRGQVYDPSTDNW-ESMAVGLREGWTGSSVVVYEH-LFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 253 ~g~ly~~gG~~~~---~~~~~~~~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~~-l~~~gg~~~~~~~~yd~~~~~ 324 (402)
++++|+....... ....+.+.++|+++++- ..++ .+..-.+....-+|+ +++++....+.+.+||.++.+
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~--~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS--LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE--CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 4678887542111 01235799999988764 3342 222222223344566 555555446799999998754
No 305
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=76.03 E-value=60 Score=31.57 Aligned_cols=183 Identities=9% Similarity=-0.014 Sum_probs=102.2
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK 183 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t 183 (402)
++.||+... ....++++++.......+...... .-.+.++-..++.||+.-.. ...++++++..
T Consensus 48 ~~~lywtD~----~~~~I~r~~~~g~~~~~v~~~g~~-----~P~GlAvD~~~~~LY~tD~~-------~~~I~v~~~dG 111 (628)
T 4a0p_A 48 DNRIYWTDI----SLKTISRAFMNGSALEHVVEFGLD-----YPEGMAVDWLGKNLYWADTG-------TNRIEVSKLDG 111 (628)
T ss_dssp TTEEEEEET----TTTEEEEEETTSCSCEEEECSSCS-----CCCEEEEETTTTEEEEEETT-------TTEEEEEETTS
T ss_pred CCEEEEEEC----CCCeEEEEECCCCCcEEEEeCCCC-----CcceEEEEeCCCEEEEEECC-------CCEEEEEecCC
Confidence 567777652 233467777766544443322211 12355554457899997543 35899999875
Q ss_pred Cceeec--CCCcccccceEEEEE--CCEEEEEc-CCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE---CCE
Q 040145 184 NRWTVM--NKMITARSFFASGVI--GGMIYVAG-GSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL---DGK 255 (402)
Q Consensus 184 ~~W~~~--~~~~~~r~~~~~~~~--~~~iyv~G-G~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~---~g~ 255 (402)
..-+.+ ..+..| ..+++- ++.||+.- |. ...++.+++....-+.+.. .........+ +++
T Consensus 112 ~~~~~l~~~~l~~P---~~iavdp~~G~lY~tD~g~------~~~I~r~~~dG~~~~~l~~---~~~~P~GlalD~~~~~ 179 (628)
T 4a0p_A 112 QHRQVLVWKDLDSP---RALALDPAEGFMYWTEWGG------KPKIDRAAMDGSERTTLVP---NVGRANGLTIDYAKRR 179 (628)
T ss_dssp TTCEEEECSSCCCE---EEEEEETTTTEEEEEECSS------SCEEEEEETTSCSCEEEEC---SCSSEEEEEEETTTTE
T ss_pred CcEEEEEeCCCCCc---ccEEEccCCCeEEEeCCCC------CCEEEEEeCCCCceEEEEC---CCCCcceEEEccccCE
Confidence 432222 223222 244443 68999975 21 4578888887655444322 1222333333 588
Q ss_pred EEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCC
Q 040145 256 LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTD 323 (402)
Q Consensus 256 ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~ 323 (402)
||+.-.. .+.++++|+....=+.+....+. ....++.+++||+.-.. ...|+++|..+.
T Consensus 180 LY~aD~~------~~~I~~~d~dG~~~~v~~~~l~~--P~glav~~~~ly~tD~~-~~~I~~~dk~tg 238 (628)
T 4a0p_A 180 LYWTDLD------TNLIESSNMLGLNREVIADDLPH--PFGLTQYQDYIYWTDWS-RRSIERANKTSG 238 (628)
T ss_dssp EEEEETT------TTEEEEEETTSCSCEEEEECCSC--EEEEEEETTEEEEEETT-TTEEEEEETTTC
T ss_pred EEEEECC------CCEEEEEcCCCCceEEeeccCCC--ceEEEEECCEEEEecCC-CCEEEEEECCCC
Confidence 9998543 35789999865432333221221 11235678999987543 567888886543
No 306
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=75.43 E-value=64 Score=31.57 Aligned_cols=106 Identities=9% Similarity=0.014 Sum_probs=52.0
Q ss_pred CeeEEEcCCCCc---EEEcCCCC---CCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEe----CCCCCeeeccc--
Q 040145 222 DSAEVLDPVKGN---WRTIASMG---TNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYD----PSTDNWESMAV-- 287 (402)
Q Consensus 222 ~~~~~yd~~t~~---W~~~~~~~---~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd----~~~~~W~~~~~-- 287 (402)
..+.++|..++. |..+.... ........+.. ++++++....... ....++.+| +.++++..+..
T Consensus 224 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~--~~~~l~~~d~~~~~~~g~~~~~~~~~ 301 (719)
T 1z68_A 224 VRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQ--NVSVLSICDFREDWQTWDCPKTQEHI 301 (719)
T ss_dssp EEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESST--TEEEEEEEEECSSSSSEECCGGGEEE
T ss_pred eEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEecccc--CeEEEEEEcccCCCCCCceEEEEecc
Confidence 367888888765 22332110 11111122222 6777665322111 123688899 77776665541
Q ss_pred -cccCCCce------eEEEECCE-EEEE-ecc-CCcEEEEEeCCCCceeecC
Q 040145 288 -GLREGWTG------SSVVVYEH-LFVV-SEL-ERMKLKVYDPSTDSWETIE 329 (402)
Q Consensus 288 -~~~~~~~~------~~~~~~~~-l~~~-gg~-~~~~~~~yd~~~~~W~~~~ 329 (402)
.....+.. ....-+|+ +++. ... +...++.+|..+.....+.
T Consensus 302 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt 353 (719)
T 1z68_A 302 EESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQIT 353 (719)
T ss_dssp EECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECS
T ss_pred cccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecc
Confidence 11222221 22223555 4443 222 2457999999887766554
No 307
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=74.44 E-value=55 Score=30.37 Aligned_cols=70 Identities=7% Similarity=-0.096 Sum_probs=38.2
Q ss_pred CCEEEEEcCCCCCCCCCCeeEEEcCCCC----cEEEcCC---CC--CCC-cceeEEEE-CCEEEEEcccccCCccCCcEE
Q 040145 205 GGMIYVAGGSSADLFELDSAEVLDPVKG----NWRTIAS---MG--TNM-ASYDAAVL-DGKLLVTEGWLWPFFVSPRGQ 273 (402)
Q Consensus 205 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~----~W~~~~~---~~--~~~-~~~~~~~~-~g~ly~~gG~~~~~~~~~~~~ 273 (402)
..++|+-|.. .+.++++|..++ +-.+.-. +. ... .-|...+. +| ||+..-.+..+.....+.
T Consensus 95 r~~l~v~~l~------s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~ 167 (462)
T 2ece_A 95 RRFLIVPGLR------SSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGIL 167 (462)
T ss_dssp SCEEEEEBTT------TCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEE
T ss_pred CCEEEEccCC------CCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEE
Confidence 4567777765 678999999877 3222211 10 011 12233333 56 777432221223345899
Q ss_pred EEeCCCCC
Q 040145 274 VYDPSTDN 281 (402)
Q Consensus 274 ~yd~~~~~ 281 (402)
.+|.++.+
T Consensus 168 vlD~~T~~ 175 (462)
T 2ece_A 168 MLDHYSFE 175 (462)
T ss_dssp EECTTTCC
T ss_pred EEECCCCe
Confidence 99998764
No 308
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=73.78 E-value=73 Score=31.47 Aligned_cols=141 Identities=7% Similarity=0.030 Sum_probs=68.8
Q ss_pred CeeEEEcCCC---C---cEEEcCCCCC---CCccee--EEEECCEEEEEcccccCCccCCcEEEEeCCCCC--eeeccc-
Q 040145 222 DSAEVLDPVK---G---NWRTIASMGT---NMASYD--AAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WESMAV- 287 (402)
Q Consensus 222 ~~~~~yd~~t---~---~W~~~~~~~~---~~~~~~--~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~~~~- 287 (402)
..++++|..+ + ....+..... ...... ...-+|+++++.-.... ....+..+|+.+++ |.....
T Consensus 228 ~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~--~~~~i~~~d~~tg~~~~~~~~~~ 305 (740)
T 4a5s_A 228 VKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQ--NYSVMDICDYDESSGRWNCLVAR 305 (740)
T ss_dssp EEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESST--TEEEEEEEEEETTTTEEEECGGG
T ss_pred eEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCC--CEEEEEEEECCCCccccceeEEE
Confidence 3688899998 7 6666542110 111111 12348886554322211 12258889988776 332211
Q ss_pred ----cccCCCce------eEEEECCEEEE-Eecc--CCcEEEEEeCCCCceeecCCCCCCccccCCeEEE-EeCCEEEEE
Q 040145 288 ----GLREGWTG------SSVVVYEHLFV-VSEL--ERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVN-ACDCRVYVV 353 (402)
Q Consensus 288 ----~~~~~~~~------~~~~~~~~l~~-~gg~--~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~ 353 (402)
.....+.. ....-+|+.++ +... +...++.||..+..-..+.. -. ....... .-+++||..
T Consensus 306 ~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~--g~---~~v~~~~~~d~~~i~f~ 380 (740)
T 4a5s_A 306 QHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITK--GT---WEVIGIEALTSDYLYYI 380 (740)
T ss_dssp CEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCC--SS---SCEEEEEEECSSEEEEE
T ss_pred EeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEeccc--CC---EEEEEEEEEeCCEEEEE
Confidence 01111211 12223555433 4322 24689999998776555542 11 1111222 236678888
Q ss_pred ecC--ceeeeEEEEeccc
Q 040145 354 GRN--LHVAVGHITRLST 369 (402)
Q Consensus 354 GG~--~~~~~~~v~~~~~ 369 (402)
+.. .+.....++..+.
T Consensus 381 ~~~~~~~~~~~~ly~v~~ 398 (740)
T 4a5s_A 381 SNEYKGMPGGRNLYKIQL 398 (740)
T ss_dssp ESCGGGCTTCBEEEEEET
T ss_pred EecCCCCCceeEEEEEEC
Confidence 765 4444455666543
No 309
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=73.76 E-value=36 Score=27.96 Aligned_cols=139 Identities=14% Similarity=0.143 Sum_probs=71.7
Q ss_pred EEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc-E--EEc----CCCCCCCcceeEEEE---CCEEEEEcccccCCccC
Q 040145 200 ASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN-W--RTI----ASMGTNMASYDAAVL---DGKLLVTEGWLWPFFVS 269 (402)
Q Consensus 200 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W--~~~----~~~~~~~~~~~~~~~---~g~ly~~gG~~~~~~~~ 269 (402)
+++..++++|++-|. ..+.++..... . ..+ +.+|. ...++.. ++++|+|-|.
T Consensus 35 Ai~~~~g~~~fFkg~--------~~Wr~~~~~~~~~~P~~I~~~wp~lp~---~IDAA~~~~~~~k~yfFkG~------- 96 (218)
T 1gen_A 35 GIAQIRGEIFFFKDR--------FIWRTVTPRDKPMGPLLVATFWPELPE---KIDAVYEAPQEEKAVFFAGN------- 96 (218)
T ss_dssp EEEEETTEEEEEETT--------EEEEESSTTSCCEEEEEGGGTCTTSCS---CCSEEEEETTTTEEEEEETT-------
T ss_pred EEEeCCCcEEEEECC--------EEEEEeCCCCccCCCEEHHHhcCCCCC---CccEEEEECCCCEEEEEeCC-------
Confidence 445578899998763 34444443211 1 122 22332 2333332 6899999873
Q ss_pred CcEEEEeCCCCCe---eeccc-cccCC--CceeEEE--ECCEEEEEeccCCcEEEEEeCCCCceee-----cCC--CCCC
Q 040145 270 PRGQVYDPSTDNW---ESMAV-GLREG--WTGSSVV--VYEHLFVVSELERMKLKVYDPSTDSWET-----IEG--PPLP 334 (402)
Q Consensus 270 ~~~~~yd~~~~~W---~~~~~-~~~~~--~~~~~~~--~~~~l~~~gg~~~~~~~~yd~~~~~W~~-----~~~--~~~p 334 (402)
..++||..+..- ..+.. ..|.. ...++.. .++++|+|-|. ..|+||..++.-.. +.. ..+|
T Consensus 97 -~yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG~---~ywr~d~~~~~v~~gyPr~i~~~w~g~p 172 (218)
T 1gen_A 97 -EYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGD---KFWRYNEVKKKMDPGFPKLIADAWNAIP 172 (218)
T ss_dssp -EEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEETT---EEEEEETTTTEECSSCCEEHHHHSSSCC
T ss_pred -EEEEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEECC---EEEEEECccccccCCCCcchhhccCCCC
Confidence 678888532100 01111 11111 1222323 36999999765 79999987653111 100 1123
Q ss_pred ccccCCeEEEEe--CCEEEEEecCceeeeEEEEeccc
Q 040145 335 EQICKPFAVNAC--DCRVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 335 ~~~~~~~~~~~~--~~~i~v~GG~~~~~~~~v~~~~~ 369 (402)
. ... ++... +|++|++-|. ..|.||.
T Consensus 173 ~--~id-aAf~~~~~g~~YfFkg~------~y~~~~~ 200 (218)
T 1gen_A 173 D--NLD-AVVDLQGGGHSYFFKGA------YYLKLEN 200 (218)
T ss_dssp S--SCS-EEEECTTTCEEEEEETT------EEEEEET
T ss_pred C--CCC-EEEEEcCCCcEEEEECC------EEEEEEC
Confidence 2 222 44444 4899999884 4666664
No 310
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=72.62 E-value=33 Score=28.42 Aligned_cols=101 Identities=11% Similarity=0.046 Sum_probs=56.5
Q ss_pred cCCEEEEEeCccCCCCCCCceEEEEE--CCC-------------CceeecCCCccc-ccceEEEE-ECCEEEEEcCCCCC
Q 040145 155 REGTLFVCGGMVSDVDCPLDLVLKYE--MQK-------------NRWTVMNKMITA-RSFFASGV-IGGMIYVAGGSSAD 217 (402)
Q Consensus 155 ~~~~i~v~GG~~~~~~~~~~~~~~~d--~~t-------------~~W~~~~~~~~~-r~~~~~~~-~~~~iyv~GG~~~~ 217 (402)
.++++|++-|. .+|+|+ +.+ ..|.-+|....+ ....+... .++++|++-|
T Consensus 71 ~~g~~~fFKg~---------~~Wr~~~~~~~~~~~~~~gP~~I~~~w~gLp~~~~p~~IDAA~~~~~~~k~yfFkG---- 137 (227)
T 3lp9_A 71 ENNEAFIFYEN---------FCALIDYAPHSKKDKIILGPKKIADVFPFFEGTVFESGIDAAYRSTRGKEVYLFKG---- 137 (227)
T ss_dssp STTEEEEEETT---------EEEEEECCTTTCCCEEEEEEEEHHHHSGGGTTSTTTTCCSEEEECSSTTEEEEEET----
T ss_pred CCCEEEEEeCC---------EEEEEeCCCCccccccccCceEHhhhcCCCCCccCCCcccEEEEECCCCEEEEEEC----
Confidence 58999999875 688888 322 113223211001 12222222 2689999987
Q ss_pred CCCCCeeEEEcCCCCcEE-----EcC-CCCCCC-----cceeEEEE---CCEEEEEcccccCCccCCcEEEEeCCCC
Q 040145 218 LFELDSAEVLDPVKGNWR-----TIA-SMGTNM-----ASYDAAVL---DGKLLVTEGWLWPFFVSPRGQVYDPSTD 280 (402)
Q Consensus 218 ~~~~~~~~~yd~~t~~W~-----~~~-~~~~~~-----~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~yd~~~~ 280 (402)
+..++||..+++-. .+. .+|... ....++.. +|++|++-|. .-+.||..++
T Consensus 138 ----~~yw~~d~~~~~~~~gyPk~i~~g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg~--------~Ywr~d~~~~ 202 (227)
T 3lp9_A 138 ----DQYARIDYGSNSMVNKEIKSISSGYPCFRNTIFESGADAAFASHKTNEVYFFKDD--------HYARVKVTPX 202 (227)
T ss_dssp ----TEEEEEETTTTEESSSSCEEHHHHCGGGTTSGGGGCCSEEEECSSTTEEEEEETT--------EEEEEECCSS
T ss_pred ----CEEEEEeCCCccccCCCCeEHHHCCCCccccccCCCccEEEEcCCCceEEEEECC--------EEEEEECCcc
Confidence 35789998765321 111 122111 22334443 5899999873 6789998776
No 311
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=72.19 E-value=40 Score=27.72 Aligned_cols=146 Identities=9% Similarity=0.104 Sum_probs=76.8
Q ss_pred ceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCc-e--eec----CCCcccccceEEEE-ECCEEEEEcCCCCCCC
Q 040145 148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNR-W--TVM----NKMITARSFFASGV-IGGMIYVAGGSSADLF 219 (402)
Q Consensus 148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~-W--~~~----~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~ 219 (402)
+.++.. ..+++|++-|. .+|+++..... . ..+ +.+|. ....+... .++++|++-|
T Consensus 33 ~DAi~~-~~g~~~fFkg~---------~~Wr~~~~~~~~~~P~~I~~~wp~lp~-~IDAA~~~~~~~k~yfFkG------ 95 (218)
T 1gen_A 33 FDGIAQ-IRGEIFFFKDR---------FIWRTVTPRDKPMGPLLVATFWPELPE-KIDAVYEAPQEEKAVFFAG------ 95 (218)
T ss_dssp CSEEEE-ETTEEEEEETT---------EEEEESSTTSCCEEEEEGGGTCTTSCS-CCSEEEEETTTTEEEEEET------
T ss_pred EeEEEe-CCCcEEEEECC---------EEEEEeCCCCccCCCEEHHHhcCCCCC-CccEEEEECCCCEEEEEeC------
Confidence 455544 48999999775 56666654321 1 111 22332 11212222 2589999976
Q ss_pred CCCeeEEEcCCCCc--E-EEcC--CCCCCCcceeEEEE---CCEEEEEcccccCCccCCcEEEEeCCCCCeeec-----c
Q 040145 220 ELDSAEVLDPVKGN--W-RTIA--SMGTNMASYDAAVL---DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESM-----A 286 (402)
Q Consensus 220 ~~~~~~~yd~~t~~--W-~~~~--~~~~~~~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~-----~ 286 (402)
+..++||..+.. + +.|. .+|.......++.. +|++|++-|. ..++||..+++-..- .
T Consensus 96 --~~yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG~--------~ywr~d~~~~~v~~gyPr~i~ 165 (218)
T 1gen_A 96 --NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGD--------KFWRYNEVKKKMDPGFPKLIA 165 (218)
T ss_dssp --TEEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEETT--------EEEEEETTTTEECSSCCEEHH
T ss_pred --CEEEEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEECC--------EEEEEECccccccCCCCcchh
Confidence 357888753110 0 1121 12222122334433 6899999873 688999876542211 1
Q ss_pred c---cccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCc
Q 040145 287 V---GLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 287 ~---~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
. ..+.. ..++... +|.+|.+-|. ..++||..+..
T Consensus 166 ~~w~g~p~~-idaAf~~~~~g~~YfFkg~---~y~~~~~~~~~ 204 (218)
T 1gen_A 166 DAWNAIPDN-LDAVVDLQGGGHSYFFKGA---YYLKLENQSLK 204 (218)
T ss_dssp HHSSSCCSS-CSEEEECTTTCEEEEEETT---EEEEEETTEEE
T ss_pred hccCCCCCC-CCEEEEEcCCCcEEEEECC---EEEEEECCcee
Confidence 0 11111 1223333 3899999665 78999986543
No 312
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=71.48 E-value=33 Score=34.07 Aligned_cols=143 Identities=9% Similarity=0.003 Sum_probs=73.7
Q ss_pred CCeeEEEcCCC--CcEEEcCCCCCCCcceeEEEECCEEEEEccccc----CCccCCcEEEEeCCC--------CCeee-c
Q 040145 221 LDSAEVLDPVK--GNWRTIASMGTNMASYDAAVLDGKLLVTEGWLW----PFFVSPRGQVYDPST--------DNWES-M 285 (402)
Q Consensus 221 ~~~~~~yd~~t--~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~----~~~~~~~~~~yd~~~--------~~W~~-~ 285 (402)
.+.++..|... ..|.++ .+|. ...-....++++|+....+. .......+..+|+.+ ..|+. +
T Consensus 268 ~~~~~~~~~~~~~~~~~~l-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 344 (711)
T 4hvt_A 268 NYDNYILDTKYKNLKLQKI-NMPS--DATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILF 344 (711)
T ss_dssp CEEEEEEECSSSSCEEEEC-CSCT--TCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEE
T ss_pred ceeEEEEcCCCCCCcceEe-ecCC--cceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEE
Confidence 45677777653 668777 2232 22123456899999764321 112234688888765 46887 3
Q ss_pred cccccCCCceeEEEECCEEEEEeccC-CcEEEEEeCCCCceeecCCCCCCccccCCeEEEE--e-CCEEEEEecCceeee
Q 040145 286 AVGLREGWTGSSVVVYEHLFVVSELE-RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA--C-DCRVYVVGRNLHVAV 361 (402)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~l~~~gg~~-~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~--~-~~~i~v~GG~~~~~~ 361 (402)
.+ -...........++.+++..-.+ ...+.++|+.++.|.....+++|.. ....... . ++.+++..... ...
T Consensus 345 ~~-~~~~~l~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~--~~~~~~~~~~~~~~~~~~~ss~-~~P 420 (711)
T 4hvt_A 345 TP-TANEVFNFISTTKDRVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQ--NAIFGMSSYEEEEEALITIENS-IVP 420 (711)
T ss_dssp CC-CTTEEEEEEEECSSCEEEEEEETTEEEEEEECEETTEECCCEEECCCST--TCEEEEECCTTCSCEEEEEECS-SSC
T ss_pred CC-CCCCeEEEEEEECCEEEEEEEECCEEEEEEEECCCCceEEEeccCCCCC--eEEEEEeecCcCCEEEEEEecC-CCC
Confidence 33 22222222245567777664433 3478999988887743210135531 1122221 2 34444443322 223
Q ss_pred EEEEecccc
Q 040145 362 GHITRLSTS 370 (402)
Q Consensus 362 ~~v~~~~~~ 370 (402)
.+++.+|..
T Consensus 421 ~~~~~~d~~ 429 (711)
T 4hvt_A 421 PTIYLWVKT 429 (711)
T ss_dssp CEEEEECTT
T ss_pred CEEEEEeCC
Confidence 567777754
No 313
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=70.60 E-value=60 Score=29.11 Aligned_cols=144 Identities=8% Similarity=0.031 Sum_probs=74.2
Q ss_pred EEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEc----CCCCCCCcceeEEEE--CCEEEEEcccccCCccCCc
Q 040145 200 ASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTI----ASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPR 271 (402)
Q Consensus 200 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~----~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~ 271 (402)
+++.+++++|++-|. .++.++..... =..+ +.+|.. --++... +|++|+|-|. .
T Consensus 185 Av~~~~g~~~fFkg~--------~~Wr~~~~~~~~~p~~I~~~wpgLP~~--iDAa~~~~~~g~~~fFkg~--------~ 246 (365)
T 3ba0_A 185 AVTTVGNKIFFFKDR--------FFWLKVSERPKTSVNLISSLWPTLPSG--IEAAYEIEARNQVFLFKDD--------K 246 (365)
T ss_dssp CEEEETTEEEEEETT--------EEEECCSSCCCCCEEEHHHHCSSCCSS--CCEEEEEGGGTEEEEEETT--------E
T ss_pred eEEEcCCeEEEEeCC--------EEEEEcCCCccCCccchhhhccCCCCC--ccEEEEecCCCEEEEEeCC--------E
Confidence 345578999998763 34444433211 0111 234422 1122233 7999999773 5
Q ss_pred EEEEeCCCCC--e-eeccc-cccCC--CceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceee-----cCC--CCCCcc
Q 040145 272 GQVYDPSTDN--W-ESMAV-GLREG--WTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWET-----IEG--PPLPEQ 336 (402)
Q Consensus 272 ~~~yd~~~~~--W-~~~~~-~~~~~--~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~-----~~~--~~~p~~ 336 (402)
.++|+..+.. + ..+.. .+|.. ...++... ++++|+|-|. ..|+||..+++-.. +.. ..+|.
T Consensus 247 yWr~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG~---~yw~yd~~~~~v~~gyPk~I~~~f~g~p~- 322 (365)
T 3ba0_A 247 YWLISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVDN---QYWRYDERRQMMDPGYPKLITKNFQGIGP- 322 (365)
T ss_dssp EEECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEETT---EEEEEETTTTEECSSCCCCHHHHSTTCCS-
T ss_pred EEEEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEECC---EEEEEeCCcceecCCCCcchhhcCCCCCC-
Confidence 6777654221 1 12222 12221 12223333 5899999764 79999987653211 000 01221
Q ss_pred ccCCeEEEEeCCEEEEEecCceeeeEEEEecccccc
Q 040145 337 ICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEK 372 (402)
Q Consensus 337 ~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~ 372 (402)
...+++...++++|++-|. ..|.||+...
T Consensus 323 -~iDaA~~~~~g~~YfFkg~------~ywr~d~~~~ 351 (365)
T 3ba0_A 323 -KIDAVFYSKNKYYYFFQGS------NQFEYDFLLQ 351 (365)
T ss_dssp -SCSEEEEETTTEEEEEETT------EEEEEETTTT
T ss_pred -ccceeeEecCCcEEEEeCC------EEEEEECCcc
Confidence 2222333338999999883 4788886554
No 314
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=68.59 E-value=66 Score=28.86 Aligned_cols=157 Identities=12% Similarity=0.147 Sum_probs=76.9
Q ss_pred EEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCc--eeec--CC--Ccccccc-eEEEEE-CC-EEEEEcCCCCCCCC
Q 040145 150 CVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVM--NK--MITARSF-FASGVI-GG-MIYVAGGSSADLFE 220 (402)
Q Consensus 150 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~--~~--~~~~r~~-~~~~~~-~~-~iyv~GG~~~~~~~ 220 (402)
++.+..++.+++.| . ++ .+.+||..+.. ...+ .+ +...... .+++.. ++ .+++.|+.
T Consensus 182 ~~~~~~~~~~l~s~-~--d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~------ 247 (447)
T 3dw8_B 182 SISINSDYETYLSA-D--DL-----RINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS------ 247 (447)
T ss_dssp EEEECTTSSEEEEE-C--SS-----EEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET------
T ss_pred EEEEcCCCCEEEEe-C--CC-----eEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC------
Confidence 34443466666666 3 22 78899987432 2221 11 1111111 223332 33 67777775
Q ss_pred CCeeEEEcCCCCcE-----EEcCCCCCC--C-------cceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCC-CCe-
Q 040145 221 LDSAEVLDPVKGNW-----RTIASMGTN--M-------ASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPST-DNW- 282 (402)
Q Consensus 221 ~~~~~~yd~~t~~W-----~~~~~~~~~--~-------~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~-~~W- 282 (402)
...+.+||..+..- ..+.....+ . .....+.+ +|++++.|+. ..+.+||+.+ ++-
T Consensus 248 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-------~~v~iwd~~~~~~~~ 320 (447)
T 3dw8_B 248 KGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-------LSVKVWDLNMENRPV 320 (447)
T ss_dssp TSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-------SEEEEEETTCCSSCS
T ss_pred CCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-------CeEEEEeCCCCcccc
Confidence 34688999887653 222211110 0 02222333 5666666653 3788999875 331
Q ss_pred eeccccc--cC--------C----CceeEEEECCEEEEEeccCCcEEEEEeCCCCceeec
Q 040145 283 ESMAVGL--RE--------G----WTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETI 328 (402)
Q Consensus 283 ~~~~~~~--~~--------~----~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~ 328 (402)
..+.... .. . .......-++..++.|+. ...+.+||..+.+-..+
T Consensus 321 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~-dg~v~iwd~~~~~~~~~ 379 (447)
T 3dw8_B 321 ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSY-NNFFRMFDRNTKRDITL 379 (447)
T ss_dssp CCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECS-TTEEEEEETTTCCEEEE
T ss_pred ceeeccccccccccccccccccccceEEEECCCCCEEEEecc-CCEEEEEEcCCCcceee
Confidence 1111100 00 0 000122235666666665 56899999988765543
No 315
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=68.42 E-value=65 Score=28.72 Aligned_cols=188 Identities=14% Similarity=0.111 Sum_probs=89.3
Q ss_pred eEEEeecCC--CcEEeCCCCCC-CCCCCCCCceEEEEcc-CC--EEEEEeCccCCCCCCCceEEEEECCCCceeecCCC-
Q 040145 120 QWQVLDLTH--YCWHTIPAMPC-KDKVCPHGFRCVSIPR-EG--TLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKM- 192 (402)
Q Consensus 120 ~~~~~d~~~--~~W~~l~~~~~-~~~~~~~~~~~~~~~~-~~--~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~- 192 (402)
.+++||+.+ .+-.++..... .......-++...... ++ .||++.-... ...-+++.+|+.++..+.+...
T Consensus 84 ~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~---~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 84 KILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGS---SSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp EEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTT---CCEEEEEEEETTTTEEEEEEEEC
T ss_pred eEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCC---CCeEEEEEEECCCCEEEEEeccc
Confidence 577888873 34444432221 1101113345544321 23 5777754311 2344566777777665544332
Q ss_pred --cccccceEEEEECCEEEEEcCC--CC---------CCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CC-EE
Q 040145 193 --ITARSFFASGVIGGMIYVAGGS--SA---------DLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DG-KL 256 (402)
Q Consensus 193 --~~~r~~~~~~~~~~~iyv~GG~--~~---------~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g-~l 256 (402)
+..+.+-..+.-++.+|+-+.. .. .......++.||+. +.+.+. ..........+ ++ .+
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~---~~l~~pNGia~spDg~~l 235 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVA---EGFDFANGINISPDGKYV 235 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEE---EEESSEEEEEECTTSSEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEee---cCCcccCcceECCCCCEE
Confidence 2233444555567898886532 11 01224678899984 333321 11122233333 44 67
Q ss_pred EEEcccccCCccCCcEEEEeCCC-CCeeeccc-cccCCCceeEEEE-CCEEEEEeccCCcEEEEEeCC
Q 040145 257 LVTEGWLWPFFVSPRGQVYDPST-DNWESMAV-GLREGWTGSSVVV-YEHLFVVSELERMKLKVYDPS 321 (402)
Q Consensus 257 y~~gG~~~~~~~~~~~~~yd~~~-~~W~~~~~-~~~~~~~~~~~~~-~~~l~~~gg~~~~~~~~yd~~ 321 (402)
|+.-.. ...+++||... ++...... ..+..--+.++-. +|.+|+....+...+.+|||+
T Consensus 236 Yvadt~------~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 236 YIAELL------AHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEEGG------GTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred EEEeCC------CCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 886542 24789998763 33332221 1111112222334 488998554333334444443
No 316
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=66.37 E-value=1.1e+02 Score=30.42 Aligned_cols=238 Identities=13% Similarity=0.124 Sum_probs=113.4
Q ss_pred EEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEc--cCCEEEEEeCccCCCCCC-CceEEEEECCCCceeecCC-Cc---
Q 040145 121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIP--REGTLFVCGGMVSDVDCP-LDLVLKYEMQKNRWTVMNK-MI--- 193 (402)
Q Consensus 121 ~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~--~~~~i~v~GG~~~~~~~~-~~~~~~~d~~t~~W~~~~~-~~--- 193 (402)
+++.+-.-.+|+.+...+............+++. ..+.||+..|........ ...+++=.=.-.+|+.+.. ..
T Consensus 47 v~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~~~l~~S~DgG~TW~~~~~~~~~~~ 126 (737)
T 2cn3_A 47 AYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNMGAILRSTDRGETWEKTILPFKMGG 126 (737)
T ss_dssp EEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCCCEEEEESSSSSSCEEEECSSCCCT
T ss_pred EEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCCccEEEeCCCCCCcccCCCCcccCC
Confidence 7888888889999765321110000123344442 135788876531111011 1123322222347988642 11
Q ss_pred --ccccc-eEEEEE---CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCC--------------cceeEEEEC
Q 040145 194 --TARSF-FASGVI---GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNM--------------ASYDAAVLD 253 (402)
Q Consensus 194 --~~r~~-~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~--------------~~~~~~~~~ 253 (402)
..+.. +.+++. .+.||+.... + ..+++=+=.-.+|+.+..+|... .+...+.++
T Consensus 127 ~~~g~~~~~~l~~~p~~~~~v~~g~~~-g-----~gl~~S~DgG~tW~~~~~~~~~~~~~~~p~~~~~~~~~g~~~v~~d 200 (737)
T 2cn3_A 127 NMPGRSMGERLAIDPNDNRILYLGTRC-G-----NGLWRSTDYGVTWSKVESFPNPGTYIYDPNFDYTKDIIGVVWVVFD 200 (737)
T ss_dssp TSTTTTSCCCEEECSSCTTCEEEECST-T-----CCEEEESSTTSSCEECTTCCCCCCCBSCTTSTTTCSBCCEEEEEEC
T ss_pred CcCcccccceEEECCCCCCEEEEeecc-C-----CcEEEeCCCCcceecccCCCCCcccccCcccccccCCCCEEEEEcC
Confidence 11212 334432 2566664311 0 12332222235799987665421 112223332
Q ss_pred ----------CEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CCEEEEEecc--------CCc
Q 040145 254 ----------GKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSEL--------ERM 313 (402)
Q Consensus 254 ----------g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~--------~~~ 313 (402)
+.||+.-... ...+++=.-.-.+|+.+.. .+........++ ++.+|+..+. ...
T Consensus 201 p~~~~~~~~~~~v~~~~~~~-----~~~v~~S~DgG~tW~~~~~-~p~~~~~~~~~~~~~~~l~~~~~d~~g~y~~~~~g 274 (737)
T 2cn3_A 201 KSSSTPGNPTKTIYVGVADK-----NESIYRSTDGGVTWKAVPG-QPKGLLPHHGVLASNGMLYITYGDTCGPYDGNGKG 274 (737)
T ss_dssp GGGSCTTSCCSCEEEEESCS-----SCCEEEESSTTSCCEECTT-CCCSSEEEEEEECTTSEEEEEEESSCCSSCCSCCE
T ss_pred CCCcccCCCCCEEEEEecCC-----CccEEEEcCCCCceEECCC-CCCcccceEEEECCCCeEEEEecCCCCccccccCc
Confidence 2677643211 0124433334567999874 444333233334 7888887532 245
Q ss_pred EEEEEeCCCCceeecCCCCCCcc---ccCCeE-EEE---eCCEEEEEecCceeeeEEEEecccccc
Q 040145 314 KLKVYDPSTDSWETIEGPPLPEQ---ICKPFA-VNA---CDCRVYVVGRNLHVAVGHITRLSTSEK 372 (402)
Q Consensus 314 ~~~~yd~~~~~W~~~~~~~~p~~---~~~~~~-~~~---~~~~i~v~GG~~~~~~~~v~~~~~~~~ 372 (402)
.+++++-...+|+++.. .|.. .+..++ +++ ..+.||+.+.........+++-...-+
T Consensus 275 ~v~~s~d~G~tW~~i~~--~~~~~~~~~~~~~~i~v~p~~~~~ly~~~~~~~~~~~~l~~S~DgG~ 338 (737)
T 2cn3_A 275 QVWKFNTRTGEWIDITP--IPYSSSDNRFCFAGLAVDRQNPDIIMVTSMNAWWPDEYIFRSTDGGA 338 (737)
T ss_dssp EEEEEETTTCCEEECCS--SCTTSTTCCSEEEEEEECTTCTTCEEEEEECCCSSCCCEEEESSTTS
T ss_pred eEEEEeCCCCCEEEccC--CCCCCcccccccccEEEcCCCCCEEEEEecccCCCCccEEEeCCCCc
Confidence 79999999999999984 3321 123333 332 236788877542212233555444444
No 317
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=65.28 E-value=1e+02 Score=29.70 Aligned_cols=114 Identities=13% Similarity=0.016 Sum_probs=64.2
Q ss_pred CceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCce-----eecCCCc-----ccccceEEEEECCEEEEEcCCCC
Q 040145 147 GFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRW-----TVMNKMI-----TARSFFASGVIGGMIYVAGGSSA 216 (402)
Q Consensus 147 ~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W-----~~~~~~~-----~~r~~~~~~~~~~~iyv~GG~~~ 216 (402)
...+++...+|+.++.||.+ ..+.+||..++.- ..+..+. ....-.+++...+. ++.++.
T Consensus 131 sv~svafSPDG~~LAsgs~D-------GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~-- 200 (588)
T 2j04_A 131 TYHCFEWNPIESSIVVGNED-------GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALS-- 200 (588)
T ss_dssp CEEEEEECSSSSCEEEEETT-------SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEET--
T ss_pred cEEEEEEcCCCCEEEEEcCC-------CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeC--
Confidence 35566666788888888873 2799999988641 0111111 11233445555566 666665
Q ss_pred CCCCCCeeEEEcCCCCc----EEEcCCCCCCCcc-eeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeee
Q 040145 217 DLFELDSAEVLDPVKGN----WRTIASMGTNMAS-YDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES 284 (402)
Q Consensus 217 ~~~~~~~~~~yd~~t~~----W~~~~~~~~~~~~-~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~ 284 (402)
-+.+.++|..++. |+.+.. ..+.. ..++.. |...+.++. ..+..||..++.-..
T Consensus 201 ----D~tVrlWd~~~~~~~~~~~tL~~--~h~~~V~svaFs-g~~LASa~~-------~tIkLWd~~~~~~~~ 259 (588)
T 2j04_A 201 ----NNSVFSMTVSASSHQPVSRMIQN--ASRRKITDLKIV-DYKVVLTCP-------GYVHKIDLKNYSISS 259 (588)
T ss_dssp ----TCCEEEECCCSSSSCCCEEEEEC--CCSSCCCCEEEE-TTEEEEECS-------SEEEEEETTTTEEEE
T ss_pred ----CCeEEEEECCCCccccceeeecc--cccCcEEEEEEE-CCEEEEEeC-------CeEEEEECCCCeEEE
Confidence 3568888887765 333321 12222 222233 444454442 378999988766533
No 318
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=64.29 E-value=1.2e+02 Score=30.16 Aligned_cols=198 Identities=11% Similarity=0.014 Sum_probs=93.2
Q ss_pred CCeEEEEEEeC-CCCceeEEEeecCCC-cEEeCCC-CCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEE
Q 040145 104 DPWLFVFAFHK-CTGKIQWQVLDLTHY-CWHTIPA-MPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKY 179 (402)
Q Consensus 104 ~~~l~~~gg~~-~~~~~~~~~~d~~~~-~W~~l~~-~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~ 179 (402)
++..+++..+. ......++++|..++ +. ++. ++ ......+...++ .|+... .+.. .....+++.
T Consensus 185 DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~--l~~~~~-------~~~~~~~WspDg~~l~y~~-~d~~--~~~~~v~~~ 252 (751)
T 2xe4_A 185 EHDLVAFSVDMSGNEVYTIEFKRISDPSQT--IADKVS-------GTNGEIVWGPDHTSLFYVT-KDET--LRENKVWRH 252 (751)
T ss_dssp TTCEEEEEEESSSSSCEEEEEEETTCTTCC--CCCCEE-------EECSCCEECSSTTEEEEEE-ECTT--CCEEEEEEE
T ss_pred CCCEEEEEEeCCCCceEEEEEEECCCCCEe--CCcccc-------CceeeEEEecCCCEEEEEE-ECCC--CCCCEEEEE
Confidence 44444444332 233456888888876 52 111 11 011122222344 455442 2111 122478888
Q ss_pred ECCCCcee--ecCCCcccccceEEEEE-CC-EEEEEcCCCCCCCCCCeeEEEcCCCC--cE--EEcCCCCCCCcceeEE-
Q 040145 180 EMQKNRWT--VMNKMITARSFFASGVI-GG-MIYVAGGSSADLFELDSAEVLDPVKG--NW--RTIASMGTNMASYDAA- 250 (402)
Q Consensus 180 d~~t~~W~--~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~t~--~W--~~~~~~~~~~~~~~~~- 250 (402)
+..++.-. .+-.-+........... ++ .|++..... . .+.++++|..+. .+ +.+.+-... ..+...
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~---~-~~~l~~~d~~~~~~~~~~~~l~~~~~~-~~~s~~~ 327 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSP---E-TAEVHLLDLRKGNAHNTLEIVRPREKG-VRYDVQM 327 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECS---S-CEEEEEEESSSCTTCCCEEESSCCCTT-CCEEEEE
T ss_pred ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCC---C-CceEEEEECCCCCCCceeEEeecCCCC-ceEEEee
Confidence 88775421 11111112222222222 34 444444321 1 567899998875 46 555321111 111221
Q ss_pred EECCEEEEEcccccCCccCCcEEEEeCCC-CCeee-ccccccCCCceeEEEECCEEEEEeccC-CcEEEEEeC
Q 040145 251 VLDGKLLVTEGWLWPFFVSPRGQVYDPST-DNWES-MAVGLREGWTGSSVVVYEHLFVVSELE-RMKLKVYDP 320 (402)
Q Consensus 251 ~~~g~ly~~gG~~~~~~~~~~~~~yd~~~-~~W~~-~~~~~~~~~~~~~~~~~~~l~~~gg~~-~~~~~~yd~ 320 (402)
..++.||+.....+ .....++.+|..+ ..|+. +-..............++.|++....+ ...++++|+
T Consensus 328 ~~g~~l~~~t~~~~--a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 328 HGTSHLVILTNEGG--AVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp ETTTEEEEEECTTT--CTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred eeCCEEEEEeCCCC--CCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence 22677888765431 1123789999876 68876 432111111111233467777765443 357889996
No 319
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=63.69 E-value=90 Score=28.59 Aligned_cols=135 Identities=14% Similarity=0.159 Sum_probs=69.3
Q ss_pred CEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCee
Q 040145 206 GMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWE 283 (402)
Q Consensus 206 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~ 283 (402)
+.||+.-.. ..+.++|+.++..+.+.. .........+ +|.||+....... ....+..++.. ..|.
T Consensus 153 g~Lyv~D~~-------~~I~~id~~~g~v~~~~~---~~~~P~giavd~dG~lyVad~~~~~--~~~gv~~~~~~-~~~~ 219 (433)
T 4hw6_A 153 DDLYWVGQR-------DAFRHVDFVNQYVDIKTT---NIGQCADVNFTLNGDMVVVDDQSSD--TNTGIYLFTRA-SGFT 219 (433)
T ss_dssp CEEEEECBT-------SCEEEEETTTTEEEEECC---CCSCEEEEEECTTCCEEEEECCSCT--TSEEEEEECGG-GTTC
T ss_pred CEEEEEeCC-------CCEEEEECCCCEEEEeec---CCCCccEEEECCCCCEEEEcCCCCc--ccceEEEEECC-CCee
Confidence 789998532 568999999888877643 1122233333 5678887542211 11245666653 2332
Q ss_pred ---eccccccCCCceeEEEE-CCEEEEEeccCCcEEEEEeCCCCce-eecCCCCCCccccCCeEEEE-eC-CEEEEEecC
Q 040145 284 ---SMAVGLREGWTGSSVVV-YEHLFVVSELERMKLKVYDPSTDSW-ETIEGPPLPEQICKPFAVNA-CD-CRVYVVGRN 356 (402)
Q Consensus 284 ---~~~~~~~~~~~~~~~~~-~~~l~~~gg~~~~~~~~yd~~~~~W-~~~~~~~~p~~~~~~~~~~~-~~-~~i~v~GG~ 356 (402)
.++. ... ..+.++-- ++.||+... ....+++||+++..- ..+...... ...+.+++ .+ +.|||.--.
T Consensus 220 ~~~~~~~-~~~-P~giavd~~~G~lyv~d~-~~~~V~~~d~~~g~~~~~~~~~~~~---~~~~~ia~dpdG~~LYvad~~ 293 (433)
T 4hw6_A 220 ERLSLCN-ARG-AKTCAVHPQNGKIYYTRY-HHAMISSYDPATGTLTEEEVMMDTK---GSNFHIVWHPTGDWAYIIYNG 293 (433)
T ss_dssp CEEEEEE-CSS-BCCCEECTTTCCEEECBT-TCSEEEEECTTTCCEEEEEEECSCC---SSCEEEEECTTSSEEEEEETT
T ss_pred ccccccc-cCC-CCEEEEeCCCCeEEEEEC-CCCEEEEEECCCCeEEEEEeccCCC---CCcccEEEeCCCCEEEEEeCC
Confidence 1111 111 11222222 688887643 356899999986654 222211111 12223443 33 458888654
Q ss_pred cee
Q 040145 357 LHV 359 (402)
Q Consensus 357 ~~~ 359 (402)
.+.
T Consensus 294 ~~~ 296 (433)
T 4hw6_A 294 KHC 296 (433)
T ss_dssp TTE
T ss_pred CCE
Confidence 433
No 320
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=58.81 E-value=88 Score=28.52 Aligned_cols=60 Identities=12% Similarity=-0.047 Sum_probs=33.9
Q ss_pred CEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCC
Q 040145 254 GKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPST 322 (402)
Q Consensus 254 g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~ 322 (402)
+.+++.|+.+ ..+..||+.++.- +.........-.++.. +|+.++.|+. ...+.+||...
T Consensus 162 ~~~las~s~D------g~v~iwD~~~~~~--~~~~~~~~~~v~~v~wspdg~~lasgs~-dg~v~iwd~~~ 223 (434)
T 2oit_A 162 PSMVAVCLAD------GSIAVLQVTETVK--VCATLPSTVAVTSVCWSPKGKQLAVGKQ-NGTVVQYLPTL 223 (434)
T ss_dssp TTEEEEEETT------SCEEEEEESSSEE--EEEEECGGGCEEEEEECTTSSCEEEEET-TSCEEEECTTC
T ss_pred CCEEEEEECC------CeEEEEEcCCCcc--eeeccCCCCceeEEEEcCCCCEEEEEcC-CCcEEEEccCC
Confidence 5677777653 3688999887621 1111111111112222 5777777775 55799999973
No 321
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=57.82 E-value=72 Score=25.60 Aligned_cols=109 Identities=10% Similarity=-0.031 Sum_probs=58.9
Q ss_pred ceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCce---eecC----CCcccccceEEEE-ECCEEEEEcCCCCCCC
Q 040145 148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRW---TVMN----KMITARSFFASGV-IGGMIYVAGGSSADLF 219 (402)
Q Consensus 148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W---~~~~----~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~ 219 (402)
..++....++++|++-|. ..|+|+..+... +.+. .+|......+... .++++|++-|
T Consensus 53 iDAa~~~~~g~~yfFkg~---------~yw~~~~~~~~~gyPk~I~~~~~glP~~~IDAA~~~~~~g~~yfFkG------ 117 (196)
T 3c7x_A 53 INTAYERKDGKFVFFKGD---------KHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRG------ 117 (196)
T ss_dssp CCEEEECTTSCEEEEETT---------EEEEEETTEECTTCSEEGGGTCBSCCSSCCSEEEEETTTTEEEEEET------
T ss_pred ccEEEEeCCCcEEEecCC---------EEEEEeCCcccCCCCeEhhhcCCCCCCCcccEEEEEccCCEEEEEEC------
Confidence 444433357889999775 688998542110 1121 2332222222221 2689999976
Q ss_pred CCCeeEEEcCCCCcEE-----EcCCCCCCCcceeEE-EE-CC-EEEEEcccccCCccCCcEEEEeCCCCC
Q 040145 220 ELDSAEVLDPVKGNWR-----TIASMGTNMASYDAA-VL-DG-KLLVTEGWLWPFFVSPRGQVYDPSTDN 281 (402)
Q Consensus 220 ~~~~~~~yd~~t~~W~-----~~~~~~~~~~~~~~~-~~-~g-~ly~~gG~~~~~~~~~~~~~yd~~~~~ 281 (402)
+..+.||..+++-. .+...+.-.....++ .. ++ ++|++-|. ..+.||..+.+
T Consensus 118 --~~yw~yd~~~~~v~~gyPk~i~~~~gip~~idaAf~~~~~~~~YfFkg~--------~y~r~d~~~~~ 177 (196)
T 3c7x_A 118 --NKYYRFNEELRAVDSEYPKNIKVWEGIPESPRGSFMGSDEVFTYFYKGN--------KYWKFNNQKLK 177 (196)
T ss_dssp --TEEEEEETTTTEECTTCSEEGGGSBTCCSSCSEEEECTTSSEEEEEETT--------EEEEEETTTTE
T ss_pred --CEEEEEeCCcccccCCCCccHHHCCCcCCCcceeEEecCCCEEEEEECC--------EEEEEECCcce
Confidence 35788998775421 111111111122333 33 44 89999773 67899987754
No 322
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=57.79 E-value=1.7e+02 Score=29.82 Aligned_cols=147 Identities=10% Similarity=-0.018 Sum_probs=71.9
Q ss_pred CEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEE
Q 040145 157 GTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWR 235 (402)
Q Consensus 157 ~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 235 (402)
+..++.++. -..+.+||..+++-... +.....-.+++.. +++.++.|+. ...+.+||..+..-.
T Consensus 69 g~~L~S~s~-------D~~v~lWd~~~~~~~~~--~~~~~~V~~v~~sp~g~~l~sgs~------dg~V~lwd~~~~~~~ 133 (902)
T 2oaj_A 69 GIYLVVINA-------KDTVYVLSLYSQKVLTT--VFVPGKITSIDTDASLDWMLIGLQ------NGSMIVYDIDRDQLS 133 (902)
T ss_dssp TTEEEEEET-------TCEEEEEETTTCSEEEE--EECSSCEEEEECCTTCSEEEEEET------TSCEEEEETTTTEEE
T ss_pred CCEEEEEEC-------cCeEEEEECCCCcEEEE--EcCCCCEEEEEECCCCCEEEEEcC------CCcEEEEECCCCccc
Confidence 555555554 23799999988753221 1111111122222 4555566654 346889999877642
Q ss_pred Ec--C------CCCCCC-cceeEEEE---CCEEEEEcccccCCccCCcEEEEeCCCCCeee-cccc----cc--------
Q 040145 236 TI--A------SMGTNM-ASYDAAVL---DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES-MAVG----LR-------- 290 (402)
Q Consensus 236 ~~--~------~~~~~~-~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~-~~~~----~~-------- 290 (402)
.. + ..+..+ ....++.+ ++.+++.|+.+ ..+ .||+.+++-.. +... .+
T Consensus 134 ~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~d------g~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~ 206 (902)
T 2oaj_A 134 SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEY------VTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKT 206 (902)
T ss_dssp EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSS------CEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCT
T ss_pred cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCC------CcE-EEECCCCceEEEEecccCCcCCCccccccc
Confidence 11 0 011111 11222222 23456666542 257 99988764321 1110 00
Q ss_pred -CCCcee--EEEE--CCEEEEEeccCCcEEEEEeCCCCcee
Q 040145 291 -EGWTGS--SVVV--YEHLFVVSELERMKLKVYDPSTDSWE 326 (402)
Q Consensus 291 -~~~~~~--~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~ 326 (402)
...... .+.+ +|..++.|+. ...+.+||..+.+-.
T Consensus 207 ~~~h~~~V~~v~fspdg~~lasgs~-Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 207 NEKRTPKVIQSLYHPNSLHIITIHE-DNSLVFWDANSGHMI 246 (902)
T ss_dssp TSCBCCCEEEEEECTTSSEEEEEET-TCCEEEEETTTCCEE
T ss_pred ccccCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCcEE
Confidence 000111 1333 6777777765 457999999876543
No 323
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=56.62 E-value=1e+02 Score=26.99 Aligned_cols=57 Identities=5% Similarity=0.019 Sum_probs=28.5
Q ss_pred eEEEEECCC-Cceee-cCCCc--ccccceEEEEE-CC-EEEEEcCCCCCCCCCCeeEEEcCC-CCcEEEc
Q 040145 175 LVLKYEMQK-NRWTV-MNKMI--TARSFFASGVI-GG-MIYVAGGSSADLFELDSAEVLDPV-KGNWRTI 237 (402)
Q Consensus 175 ~~~~~d~~t-~~W~~-~~~~~--~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~-t~~W~~~ 237 (402)
.+.+|+... ++... +...+ .....+.++.. ++ .+|+.... ...+.+||.. +++...+
T Consensus 120 ~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~------~~~v~~~~~~~~g~~~~~ 183 (365)
T 1jof_A 120 YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT------ANKLWTHRKLASGEVELV 183 (365)
T ss_dssp EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT------TTEEEEEEECTTSCEEEE
T ss_pred eEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCC------CCEEEEEEECCCCCEEEe
Confidence 577787753 43321 11111 11223344443 34 56665321 3578899987 6766544
No 324
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=54.21 E-value=1.6e+02 Score=28.58 Aligned_cols=195 Identities=10% Similarity=-0.015 Sum_probs=88.0
Q ss_pred eEEEeecCCCcE---EeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEE----CCCCceeecCC-
Q 040145 120 QWQVLDLTHYCW---HTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYE----MQKNRWTVMNK- 191 (402)
Q Consensus 120 ~~~~~d~~~~~W---~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d----~~t~~W~~~~~- 191 (402)
.++++|..+.+- ..+....... ........++...++++++..... . .....++++| +.+++++.+..
T Consensus 225 ~l~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~SpD~~~~~~~~~~-~--~~~~~l~~~d~~~~~~~g~~~~~~~~ 300 (719)
T 1z68_A 225 RIFIIDTTYPAYVGPQEVPVPAMIA-SSDYYFSWLTWVTDERVCLQWLKR-V--QNVSVLSICDFREDWQTWDCPKTQEH 300 (719)
T ss_dssp EEEEEESSCHHHHCCEECCCCHHHH-TSCEEEEEEEESSSSEEEEEEEES-S--TTEEEEEEEEECSSSSSEECCGGGEE
T ss_pred EEEEEECCCCCccceeEccCCccCC-CCcceEEEeEEeCCCeEEEEEecc-c--cCeEEEEEEcccCCCCCCceEEEEec
Confidence 567788877652 2332100000 000122344454567776653211 1 2345799999 88877665431
Q ss_pred ---Ccccccc----eEEEEE-CC-EEEEE-cCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcc
Q 040145 192 ---MITARSF----FASGVI-GG-MIYVA-GGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEG 261 (402)
Q Consensus 192 ---~~~~r~~----~~~~~~-~~-~iyv~-GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG 261 (402)
-...... ...+.. ++ .|++. ...++ ...++.+|..++..+.+..-....... ...-++.||+.+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g----~~~l~~~~~~~~~~~~lt~~~~~v~~~-~~~d~~~i~~~~~ 375 (719)
T 1z68_A 301 IEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDG----YKHIHYIKDTVENAIQITSGKWEAINI-FRVTQDSLFYSSN 375 (719)
T ss_dssp EEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTS----CEEEEEESSCSTTCEECSCSSSCEEEE-EEECSSEEEEEES
T ss_pred ccccCCceEccccCCccEECCCCCeEEEEEEccCC----ceEEEEEECCCCceEecccCceEEEEE-EEEeCCEEEEEEe
Confidence 1111111 022222 33 44443 32222 457899999887766654322111111 1222445666654
Q ss_pred c--ccCCccCCcEEEEeCCCCC--eeecccccc-CCCceeEEEE--CCEEEEEe--ccCCcEEEEEeCCCCce
Q 040145 262 W--LWPFFVSPRGQVYDPSTDN--WESMAVGLR-EGWTGSSVVV--YEHLFVVS--ELERMKLKVYDPSTDSW 325 (402)
Q Consensus 262 ~--~~~~~~~~~~~~yd~~~~~--W~~~~~~~~-~~~~~~~~~~--~~~l~~~g--g~~~~~~~~yd~~~~~W 325 (402)
. ... ....++..+..++. .+.+..... .......+.+ +++.+++. +.....++.||.++++-
T Consensus 376 ~~~~~~--~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~ 446 (719)
T 1z68_A 376 EFEEYP--GRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQE 446 (719)
T ss_dssp CGGGCT--TCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCE
T ss_pred cCCCCC--ceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCE
Confidence 3 111 12356777765553 344443221 1111112222 34433332 22234678888877653
No 325
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=53.44 E-value=1.8e+02 Score=28.81 Aligned_cols=230 Identities=10% Similarity=0.138 Sum_probs=112.1
Q ss_pred CCcEEeCCCCCCCCCCCCCCceEEEEccC-CEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccc----cceEEE
Q 040145 128 HYCWHTIPAMPCKDKVCPHGFRCVSIPRE-GTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITAR----SFFASG 202 (402)
Q Consensus 128 ~~~W~~l~~~~~~~~~~~~~~~~~~~~~~-~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r----~~~~~~ 202 (402)
..+|+.+.+-.... +-.+.++...+ +.||+.. . ...+++.+-.-.+|+.+.+.+... ......
T Consensus 10 ~~~w~~~~~~~~~g----~i~~i~~~p~~~~~~~~~~-~-------~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i 77 (737)
T 2cn3_A 10 PYKWDNVVIGGGGG----FMPGIVFNETEKDLIYARA-A-------IGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESI 77 (737)
T ss_dssp CEEEEEECCCSBCS----CCCEEEECSSSTTCEEEEC-S-------SSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEE
T ss_pred CCeeEEcccCCCcc----eeeEEEECCCCCCEEEEEe-c-------CCcEEEeCCCCCCEEECcCccCcccccCCCcceE
Confidence 45688876433110 12233333222 5677643 1 125888888888999986533211 122233
Q ss_pred EE----CCEEEEEcCCCCCCCCCCeeEEEcCC--CCcEEEcCC-CCC-----CC-cceeEEEE---CCEEEEEcccccCC
Q 040145 203 VI----GGMIYVAGGSSADLFELDSAEVLDPV--KGNWRTIAS-MGT-----NM-ASYDAAVL---DGKLLVTEGWLWPF 266 (402)
Q Consensus 203 ~~----~~~iyv~GG~~~~~~~~~~~~~yd~~--t~~W~~~~~-~~~-----~~-~~~~~~~~---~g~ly~~gG~~~~~ 266 (402)
.+ .+.||+..|............+|-+. -.+|+.+.. .+. .+ ..+..++. .+.||+.... +
T Consensus 78 ~~dp~~~~~v~v~~~~~~~~~~~~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~-g-- 154 (737)
T 2cn3_A 78 ATDPVDPNRVYIVAGMYTNDWLPNMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC-G-- 154 (737)
T ss_dssp EECSSSTTCEEEEECSCSSSSSCCCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST-T--
T ss_pred EeCCCCCCEEEEEecccccccccCCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc-C--
Confidence 33 25788876531111101123444443 357988742 111 11 12333432 2567764311 0
Q ss_pred ccCCcEEEEeCCCCCeeeccccccCC--------------CceeE-EEEC----------CEEEEEeccCCcEEEEEeCC
Q 040145 267 FVSPRGQVYDPSTDNWESMAVGLREG--------------WTGSS-VVVY----------EHLFVVSELERMKLKVYDPS 321 (402)
Q Consensus 267 ~~~~~~~~yd~~~~~W~~~~~~~~~~--------------~~~~~-~~~~----------~~l~~~gg~~~~~~~~yd~~ 321 (402)
..+++=+-.-.+|+.+.. ++.. ..+.. +.++ ++||+.-+.....+++=.-.
T Consensus 155 ---~gl~~S~DgG~tW~~~~~-~~~~~~~~~~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~~~v~~S~Dg 230 (737)
T 2cn3_A 155 ---NGLWRSTDYGVTWSKVES-FPNPGTYIYDPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKNESIYRSTDG 230 (737)
T ss_dssp ---CCEEEESSTTSSCEECTT-CCCCCCCBSCTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSSCCEEEESST
T ss_pred ---CcEEEeCCCCcceecccC-CCCCcccccCcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCCccEEEEcCC
Confidence 234444444568998864 2211 01122 3442 26776432222234443333
Q ss_pred CCceeecCCCCCCccccCCeEEEE-eCCEEEEEecCc-----eeeeEEEEecccccccCceeeeEEEEeC
Q 040145 322 TDSWETIEGPPLPEQICKPFAVNA-CDCRVYVVGRNL-----HVAVGHITRLSTSEKKWSFSVQWQVVDA 385 (402)
Q Consensus 322 ~~~W~~~~~~~~p~~~~~~~~~~~-~~~~i~v~GG~~-----~~~~~~v~~~~~~~~~~~~~~~W~~~~~ 385 (402)
-.+|+.+. .+|... ..+.++. .++.+|+..+.. ......++.++.... +|+.+..
T Consensus 231 G~tW~~~~--~~p~~~-~~~~~~~~~~~~l~~~~~d~~g~y~~~~~g~v~~s~d~G~------tW~~i~~ 291 (737)
T 2cn3_A 231 GVTWKAVP--GQPKGL-LPHHGVLASNGMLYITYGDTCGPYDGNGKGQVWKFNTRTG------EWIDITP 291 (737)
T ss_dssp TSCCEECT--TCCCSS-EEEEEEECTTSEEEEEEESSCCSSCCSCCEEEEEEETTTC------CEEECCS
T ss_pred CCceEECC--CCCCcc-cceEEEECCCCeEEEEecCCCCccccccCceEEEEeCCCC------CEEEccC
Confidence 56799998 455321 1222333 378899876532 114567888876555 7777665
No 326
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=51.75 E-value=1.4e+02 Score=27.18 Aligned_cols=122 Identities=11% Similarity=0.180 Sum_probs=71.2
Q ss_pred CCcEEE--cCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCC-----CCC-eeeccccccCCCceeE-EEEC
Q 040145 231 KGNWRT--IASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPS-----TDN-WESMAVGLREGWTGSS-VVVY 301 (402)
Q Consensus 231 t~~W~~--~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~-----~~~-W~~~~~~~~~~~~~~~-~~~~ 301 (402)
...|+. ++..|..-.-|+-+.+++.=|.+|-.+++-....-...|=+. ... =+.++..........+ -..+
T Consensus 269 ~spW~~t~L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyYd 348 (670)
T 3ju4_A 269 KSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIKYYD 348 (670)
T ss_dssp TSCCEEEECCSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCGGGCTTEEEEEEEEET
T ss_pred cCCceecccccccceeeeeeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhC
Confidence 455753 455665566788888888888888766554332222333221 111 1223333333333344 3679
Q ss_pred CEEEEEeccC-----CcEEEEEeCCCCceeecCCCCCCcccc-CCeEEEEeCCEEEEEec
Q 040145 302 EHLFVVSELE-----RMKLKVYDPSTDSWETIEGPPLPEQIC-KPFAVNACDCRVYVVGR 355 (402)
Q Consensus 302 ~~l~~~gg~~-----~~~~~~yd~~~~~W~~~~~~~~p~~~~-~~~~~~~~~~~i~v~GG 355 (402)
|.||+..... +..+.+-+.....|.-+. .|.... ...-.+..++.||++|-
T Consensus 349 gvLyLtTRgt~~~~~GS~L~rs~d~Gq~w~slr---fp~nvHhtnlPFakvgD~l~mFgs 405 (670)
T 3ju4_A 349 GVLYLITRGTRGDRLGSSLHRSRDIGQTWESLR---FPHNVHHTTLPFAKVGDDLIMFGS 405 (670)
T ss_dssp TEEEEEEEESCTTSCCCEEEEESSTTSSCEEEE---CTTCCCSSCCCEEEETTEEEEEEE
T ss_pred CEEEEEecCcCCCCCcceeeeecccCCchhhee---ccccccccCCCcceeCCEEEEEec
Confidence 9999985332 356777777777899875 443211 12245678999999995
No 327
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=50.32 E-value=1.9e+02 Score=28.13 Aligned_cols=143 Identities=13% Similarity=0.109 Sum_probs=71.1
Q ss_pred EEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCC-cE--EEc----CCCCCCCcceeEEEE--CCEEEEEcccccCCccCC
Q 040145 200 ASGVIGGMIYVAGGSSADLFELDSAEVLDPVKG-NW--RTI----ASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSP 270 (402)
Q Consensus 200 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~-~W--~~~----~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~ 270 (402)
+++..++++|++-|. ..+.++.... .. ..| +.+|.. --++... ++++|+|-|.
T Consensus 448 Ait~~rg~~yfFKg~--------~yWr~~~~~~~~~~P~~Is~~wp~LP~~--IDAA~~~~~~~k~yFFkG~-------- 509 (631)
T 1ck7_A 448 GIAQIRGEIFFFKDR--------FIWRTVTPRDKPMGPLLVATFWPELPEK--IDAVYEAPQEEKAVFFAGN-------- 509 (631)
T ss_dssp EEEECSSSEEEECSS--------EEEEESCTTSCCEEEEEGGGTCTTSCSS--CSBCCEETTTTEEEEEETT--------
T ss_pred eeEecCCcEEEEcCC--------EEEEEcCCCCCCCCceeccccCCCCCcc--ceEEEEECCCCEEEEEecC--------
Confidence 445567888888763 4566655432 11 112 123321 1122222 6889999773
Q ss_pred cEEEEeCCCC--Ce-eeccc-cccCC--CceeEEE--ECCEEEEEeccCCcEEEEEeCCCCcee-----ecCC--CCCCc
Q 040145 271 RGQVYDPSTD--NW-ESMAV-GLREG--WTGSSVV--VYEHLFVVSELERMKLKVYDPSTDSWE-----TIEG--PPLPE 335 (402)
Q Consensus 271 ~~~~yd~~~~--~W-~~~~~-~~~~~--~~~~~~~--~~~~l~~~gg~~~~~~~~yd~~~~~W~-----~~~~--~~~p~ 335 (402)
..++|+..+. -+ ..+.. ..|.. ...++.. .++++|+|-|. ..|+||..++.=. .+.. ..+|.
T Consensus 510 ~yWry~~~~l~~GYPk~Is~~G~P~~~~~IDAAf~~~~~gktYFFkG~---~ywryd~~~~~vd~gYPk~i~~~w~G~p~ 586 (631)
T 1ck7_A 510 EYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGD---KFWRYNEVKKKMDPGFPKLIADAWNAIPD 586 (631)
T ss_dssp EEEEEETTEECTTCCEEGGGGTCCTTCCCCCBCCCCTTTCEEEEEETT---EEEEEETTTTEECTTCCEETTTSCSSCCT
T ss_pred EEEEECCCccccCCCccchhcCCCCCCCcceeEEEecCCCeEEEEECC---EEEEEcCCcccccCCCCcchHhhcCCCCC
Confidence 6788885321 01 01111 11110 1112222 36899999765 7999998765211 1110 01221
Q ss_pred cccCCeEEEEe--CCEEEEEecCceeeeEEEEecccccc
Q 040145 336 QICKPFAVNAC--DCRVYVVGRNLHVAVGHITRLSTSEK 372 (402)
Q Consensus 336 ~~~~~~~~~~~--~~~i~v~GG~~~~~~~~v~~~~~~~~ 372 (402)
..-++... ++++|++-|. ..|.||...+
T Consensus 587 ---~iDAAf~~~~~g~~YFFkG~------~Ywr~d~~~~ 616 (631)
T 1ck7_A 587 ---NLDAVVDLQGGGHSYFFKGA------YYLKLENQSL 616 (631)
T ss_dssp ---TCCEEECCTTSCBCEEEETT------EEECCBTTBT
T ss_pred ---CCcEeEEEcCCCeEEEEECC------EEEEEeCccc
Confidence 11234443 3899999884 3677765443
No 328
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=50.23 E-value=1.8e+02 Score=28.03 Aligned_cols=176 Identities=13% Similarity=0.079 Sum_probs=98.0
Q ss_pred cCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEE--ECCEEEEEcCCCCCCCCCCeeEEEcCCCC
Q 040145 155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGV--IGGMIYVAGGSSADLFELDSAEVLDPVKG 232 (402)
Q Consensus 155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 232 (402)
.++.||+.-- ....++++++.....+.+-.... ....++++ .++.||+.-.. ...+++.++...
T Consensus 359 ~~~~ly~sD~-------~~~~I~r~~~~g~~~~~v~~~~~-~~p~GlAvD~~~~~lY~tD~~------~~~I~v~~~~G~ 424 (619)
T 3s94_A 359 VEGYIYWTDD-------EVRAIRRSFIDGSGSQFVVTAQI-AHPDGIAVDWVARNLYWTDTG------TDRIEVTRLNGT 424 (619)
T ss_dssp TTTEEEEEET-------TTTEEEEEETTSCSCEEEECSSC-SCCCEEEEETTTTEEEEEETT------TTEEEEEETTSC
T ss_pred CCCeEEEEeC-------CCCeEEEEEcCCCccEEEEECCC-CCcCceEEecccCcEEEEeCC------CCcEEEEeCCCC
Confidence 4689998753 24479999998765554422111 12234444 47899998543 567888888765
Q ss_pred cEEEcCCCCCCCcceeEEEE---CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCc-eeEEE-ECCEEEEE
Q 040145 233 NWRTIASMGTNMASYDAAVL---DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWT-GSSVV-VYEHLFVV 307 (402)
Q Consensus 233 ~W~~~~~~~~~~~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~-~~~~~-~~~~l~~~ 307 (402)
.-+.+.. .........++ +|.||+.--.. ...+++.++....=..+... .-.+- +.++- .+++||+.
T Consensus 425 ~~~~l~~--~~l~~P~~iavdp~~G~ly~tD~g~-----~~~I~r~~~dG~~~~~l~~~-~l~~P~GlalD~~~~~LY~a 496 (619)
T 3s94_A 425 MRKILIS--EDLEEPRAIVLDPMVGYMYWTDWGE-----IPKIERAALDGSDRVVLVNT-SLGWPNGLALDYDEGKIYWG 496 (619)
T ss_dssp SCEEEEC--TTCCSEEEEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCEEEECS-SCSCEEEEEEETTTTEEEEE
T ss_pred eEEEEEE--CCCCCeeeEEEEcCCCcEEEecCCC-----CCEEEEEccCCCccEEEEeC-CCCCCeeeEEcccCCEEEEE
Confidence 4333321 11222333333 58999975211 23688887754332222210 11111 12222 26899998
Q ss_pred eccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCc
Q 040145 308 SELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNL 357 (402)
Q Consensus 308 gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~ 357 (402)
-.. ...|+++|++...=+.+....+ ...+++++.++.||+.--..
T Consensus 497 D~~-~~~I~~~~~dG~~~~~~~~~~l----~~P~glav~~~~ly~tD~~~ 541 (619)
T 3s94_A 497 DAK-TDKIEVMNTDGTGRRVLVEDKI----PHIFGFTLLGDYVYWTDWQR 541 (619)
T ss_dssp ETT-TTEEEEEESSSCCCEEEEECCC----CSSCCEEEETTEEEEECTTS
T ss_pred ECC-CCEEEEEecCCCceEEEeccCC----CCcEEEEEECCEEEEeecCC
Confidence 543 5689999987554333321122 34467888899999986543
No 329
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=50.13 E-value=1.8e+02 Score=27.93 Aligned_cols=189 Identities=9% Similarity=-0.072 Sum_probs=97.2
Q ss_pred ceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecC-CCcc-cccceEEEE-ECCEEEEEcCCCCCCCCCCee
Q 040145 148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMN-KMIT-ARSFFASGV-IGGMIYVAGGSSADLFELDSA 224 (402)
Q Consensus 148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~-~~~~-~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~ 224 (402)
-.+++...+|..++.++.+ ..+.+||-.+ .+..+. .++. .+..++++. -++++++.||. -..+
T Consensus 88 V~~vawSPdG~~LAs~s~d-------g~V~iwd~~~-~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~------DGtV 153 (588)
T 2j04_A 88 PRVCKPSPIDDWMAVLSNN-------GNVSVFKDNK-MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNE------DGEL 153 (588)
T ss_dssp EEEEEECSSSSCEEEEETT-------SCEEEEETTE-EEEECCCSSCSTTTCEEEEEECSSSSCEEEEET------TSEE
T ss_pred EEEEEECCCCCEEEEEeCC-------CcEEEEeCCc-eeeeccCCCccccccEEEEEEcCCCCEEEEEcC------CCEE
Confidence 4455555677777777652 2688888433 333332 2221 234455554 36777788876 4568
Q ss_pred EEEcCCCCc--------EEEcCC-CCCCC-cceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCC----eeecccccc
Q 040145 225 EVLDPVKGN--------WRTIAS-MGTNM-ASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN----WESMAVGLR 290 (402)
Q Consensus 225 ~~yd~~t~~--------W~~~~~-~~~~~-~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~----W~~~~~~~~ 290 (402)
.+||..++. ...+.. ..... .-...+...+. ++.++.+ +.+..+|..++. |..+.. ..
T Consensus 154 kIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D------~tVrlWd~~~~~~~~~~~tL~~-~h 225 (588)
T 2j04_A 154 QFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSN------NSVFSMTVSASSHQPVSRMIQN-AS 225 (588)
T ss_dssp EEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETT------CCEEEECCCSSSSCCCEEEEEC-CC
T ss_pred EEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCC------CeEEEEECCCCccccceeeecc-cc
Confidence 899998763 222210 11111 11223333344 5555542 478999988766 223321 11
Q ss_pred CCCceeEEEECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE---eCCEEEEEecCceeeeEEEEec
Q 040145 291 EGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA---CDCRVYVVGRNLHVAVGHITRL 367 (402)
Q Consensus 291 ~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~---~~~~i~v~GG~~~~~~~~v~~~ 367 (402)
.......+.. |..++.++. ..+..||..+..-.... .... .....+.. .++.++++++.++. .+|.+
T Consensus 226 ~~~V~svaFs-g~~LASa~~--~tIkLWd~~~~~~~~~~---~gh~-~~V~~va~~~s~d~~~La~a~edG~---klw~~ 295 (588)
T 2j04_A 226 RRKITDLKIV-DYKVVLTCP--GYVHKIDLKNYSISSLK---TGSL-ENFHIIPLNHEKESTILLMSNKTSY---KVLLE 295 (588)
T ss_dssp SSCCCCEEEE-TTEEEEECS--SEEEEEETTTTEEEEEE---CSCC-SCCCEEEETTCSSCEEEEECSSCEE---EEEES
T ss_pred cCcEEEEEEE-CCEEEEEeC--CeEEEEECCCCeEEEEE---cCCC-ceEEEEEeeeCCCCCEEEEEcCCCC---EEEee
Confidence 1112222233 455555552 58999999887653333 1111 11223333 35567777775443 45555
Q ss_pred c
Q 040145 368 S 368 (402)
Q Consensus 368 ~ 368 (402)
|
T Consensus 296 d 296 (588)
T 2j04_A 296 D 296 (588)
T ss_dssp S
T ss_pred c
Confidence 4
No 330
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=49.46 E-value=2e+02 Score=28.34 Aligned_cols=148 Identities=6% Similarity=-0.029 Sum_probs=75.7
Q ss_pred ceEEEEECCC--CceeecCCCcccccceEEEEECCEEEEEcCCC--C--CCCCCCeeEEEcCCC--------CcEEE-cC
Q 040145 174 DLVLKYEMQK--NRWTVMNKMITARSFFASGVIGGMIYVAGGSS--A--DLFELDSAEVLDPVK--------GNWRT-IA 238 (402)
Q Consensus 174 ~~~~~~d~~t--~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~--~--~~~~~~~~~~yd~~t--------~~W~~-~~ 238 (402)
+++++.|... +.|.++ ..++........++++|+....+ . ...+...+..+|..+ ..|+. +.
T Consensus 269 ~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 345 (711)
T 4hvt_A 269 YDNYILDTKYKNLKLQKI---NMPSDATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFT 345 (711)
T ss_dssp EEEEEEECSSSSCEEEEC---CSCTTCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEEC
T ss_pred eeEEEEcCCCCCCcceEe---ecCCcceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEEC
Confidence 4555555432 455555 22333222456789999976442 1 112255677887654 46886 32
Q ss_pred CCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeecc-ccccCCCceeEEE--E-CCEEEEE-eccC-C
Q 040145 239 SMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMA-VGLREGWTGSSVV--V-YEHLFVV-SELE-R 312 (402)
Q Consensus 239 ~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~~~~~~~~~--~-~~~l~~~-gg~~-~ 312 (402)
+-. .+.-......++.+|+..-.++ ...+.++|+.++.|.... ...+......... . ++.+++. .+.. .
T Consensus 346 ~~~-~~~l~~~~~~~~~l~~~~~~~~----~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P 420 (711)
T 4hvt_A 346 PTA-NEVFNFISTTKDRVFLATYDNV----VAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVP 420 (711)
T ss_dssp CCT-TEEEEEEEECSSCEEEEEEETT----EEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSC
T ss_pred CCC-CCeEEEEEEECCEEEEEEEECC----EEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCC
Confidence 221 1222233344667766543221 236889998888885433 2233221111111 1 2344443 3322 4
Q ss_pred cEEEEEeCCCCceeecCC
Q 040145 313 MKLKVYDPSTDSWETIEG 330 (402)
Q Consensus 313 ~~~~~yd~~~~~W~~~~~ 330 (402)
..++.||.. .+++.+..
T Consensus 421 ~~~~~~d~~-~~~~~l~~ 437 (711)
T 4hvt_A 421 PTIYLWVKT-HELKIIRK 437 (711)
T ss_dssp CEEEEECTT-SCEEEEEC
T ss_pred CEEEEEeCC-CcEEEEec
Confidence 689999987 77776653
No 331
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=48.25 E-value=1.5e+02 Score=26.33 Aligned_cols=64 Identities=5% Similarity=-0.035 Sum_probs=35.8
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CC-EEEEEcCCCCCCCCCCeeEEEcCCCCc
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GG-MIYVAGGSSADLFELDSAEVLDPVKGN 233 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~ 233 (402)
++.+++.||.+ ..+.++|..++.-... .........+++.. ++ .+++.|+. -..+.+||..+.+
T Consensus 155 d~~~las~s~D-------~tv~~Wd~~~~~~~~~-~~~~~~~v~~v~~~p~~~~~l~~~~~------d~~v~~wd~~t~~ 220 (393)
T 4gq1_A 155 AEQVIASVGDD-------CTLIIWRLTDEGPILA-GYPLSSPGISVQFRPSNPNQLIVGER------NGNIRIFDWTLNL 220 (393)
T ss_dssp EEEEEEEEETT-------SEEEEEEEETTEEEEE-EEECSSCEEEEEEETTEEEEEEEEET------TSEEEEEETTCCC
T ss_pred CCCEEEEEECC-------CeEEEEECCCCceeee-ecCCCCCcEEEEECCCCCceEEecCC------CCEEEEEECCCCc
Confidence 56788888863 2788899876532111 11111122234444 33 45666665 3567888887764
No 332
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=48.24 E-value=1.8e+02 Score=27.30 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=61.1
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEE-------ccCC-EEEEEeCccCCCCCCCce
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSI-------PREG-TLFVCGGMVSDVDCPLDL 175 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~-------~~~~-~i~v~GG~~~~~~~~~~~ 175 (402)
++.||++... ...+.++|+..+....+....... . ......++ ..++ .||+..-..... .....
T Consensus 151 ~~~Lyv~~~~----~~~i~~ID~~~~~v~~l~~~~~~~--~-~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~-~~~~~ 222 (496)
T 3kya_A 151 KDHLYICYDG----HKAIQLIDLKNRMLSSPLNINTIP--T-NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG-DESPS 222 (496)
T ss_dssp EEEEEEEEET----EEEEEEEETTTTEEEEEECCTTSS--C-SBEEEEEECCCBTTTBCTTCEEEEEECCCTTG-GGEEE
T ss_pred CCEEEEEECC----CCeEEEEECCCCEEEEEEccCccc--c-CCCcEEEEeecccccCCCCCEEEEEeCCCCCc-ccCce
Confidence 4567877632 245888999999888775543211 1 11233333 2344 588875432100 12345
Q ss_pred EEEEECCC-CceeecC---CCcccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCC
Q 040145 176 VLKYEMQK-NRWTVMN---KMITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPV 230 (402)
Q Consensus 176 ~~~~d~~t-~~W~~~~---~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~ 230 (402)
+++++... +.|...+ .++.-...+++++. ++.||+.--. ...+++||+.
T Consensus 223 V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~------~g~V~r~d~~ 277 (496)
T 3kya_A 223 VYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYE------KGQVFRLDLV 277 (496)
T ss_dssp EEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETT------TTEEEEECHH
T ss_pred EEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECC------CCEEEEEecc
Confidence 88887655 4553201 11122333455554 4688887643 4569999997
No 333
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=47.36 E-value=1.6e+02 Score=26.65 Aligned_cols=61 Identities=5% Similarity=-0.061 Sum_probs=33.6
Q ss_pred CEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCC
Q 040145 157 GTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVK 231 (402)
Q Consensus 157 ~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t 231 (402)
+.+++.|+.+ ..+.+||..++.-.. ..........+++.. +++.++.|+. ...+.+||+..
T Consensus 162 ~~~las~s~D-------g~v~iwD~~~~~~~~-~~~~~~~~v~~v~wspdg~~lasgs~------dg~v~iwd~~~ 223 (434)
T 2oit_A 162 PSMVAVCLAD-------GSIAVLQVTETVKVC-ATLPSTVAVTSVCWSPKGKQLAVGKQ------NGTVVQYLPTL 223 (434)
T ss_dssp TTEEEEEETT-------SCEEEEEESSSEEEE-EEECGGGCEEEEEECTTSSCEEEEET------TSCEEEECTTC
T ss_pred CCEEEEEECC-------CeEEEEEcCCCccee-eccCCCCceeEEEEcCCCCEEEEEcC------CCcEEEEccCC
Confidence 5677777653 268899998773211 111111111222222 5666677765 34688999883
No 334
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=47.17 E-value=2.2e+02 Score=27.98 Aligned_cols=76 Identities=9% Similarity=0.008 Sum_probs=38.1
Q ss_pred cCCEEEEEeCccCCCCCCCceEEEEECCCCceeec-CCCcccccc--e-EEEE-ECCEEEEEcCCCCC---CCCCCeeEE
Q 040145 155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVM-NKMITARSF--F-ASGV-IGGMIYVAGGSSAD---LFELDSAEV 226 (402)
Q Consensus 155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~-~~~~~~r~~--~-~~~~-~~~~iyv~GG~~~~---~~~~~~~~~ 226 (402)
.++.+++.+ + ..+.+||+.|++=+.+ ..-...... . .... -+++.++++..+.. ......+++
T Consensus 26 ~dg~~~~~~----~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~ 96 (740)
T 4a5s_A 26 SDHEYLYKQ----E-----NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (740)
T ss_dssp SSSEEEEEE----T-----TEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred CCCcEEEEc----C-----CcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence 366666654 1 2799999999875443 111111111 1 1122 24443344332111 011256789
Q ss_pred EcCCCCcEEEcCC
Q 040145 227 LDPVKGNWRTIAS 239 (402)
Q Consensus 227 yd~~t~~W~~~~~ 239 (402)
||..+++-..+..
T Consensus 97 ~d~~~~~~~~l~~ 109 (740)
T 4a5s_A 97 YDLNKRQLITEER 109 (740)
T ss_dssp EETTTTEECCSSC
T ss_pred EECCCCcEEEccc
Confidence 9999988665543
No 335
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=46.07 E-value=2.1e+02 Score=27.52 Aligned_cols=199 Identities=10% Similarity=-0.004 Sum_probs=101.6
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE----CCEEEEEcCCCC----C-------CCC
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI----GGMIYVAGGSSA----D-------LFE 220 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~----~~~iyv~GG~~~----~-------~~~ 220 (402)
+..+|+.... ...+.+.|+.+.+-..+-.+|.....|+++.. .+.+|+.+.... . ...
T Consensus 101 G~~lfVnd~~-------~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~ 173 (595)
T 1fwx_A 101 GRFLFMNDKA-------NTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY 173 (595)
T ss_dssp EEEEEEEETT-------TTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGE
T ss_pred CCEEEEEcCC-------CCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccccccc
Confidence 4468875432 45799999999875554466666666777653 467877753311 0 111
Q ss_pred CCeeEEEcCCCCc--EEEc-CCCCCCCcceeEEEECC-EEEEEcccc-------------------------------cC
Q 040145 221 LDSAEVLDPVKGN--WRTI-ASMGTNMASYDAAVLDG-KLLVTEGWL-------------------------------WP 265 (402)
Q Consensus 221 ~~~~~~yd~~t~~--W~~~-~~~~~~~~~~~~~~~~g-~ly~~gG~~-------------------------------~~ 265 (402)
.+.+-+.|.++.+ |+.. +.-|.. ..+..+| .+|+..-.. +.
T Consensus 174 ~~~vtvID~~t~~v~~qI~Vgg~pd~----~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk 249 (595)
T 1fwx_A 174 VNVFTAVDADKWEVAWQVLVSGNLDN----CDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 249 (595)
T ss_dssp EEEEEEEETTTTEEEEEEEESSCCCC----EEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred CceEEEEECCCCeEEEEEEeCCCccc----eEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCC
Confidence 3468889999875 5432 221111 1111122 222222110 11
Q ss_pred CccCCcEEEEeCCCCCeee-ccc-cccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCc-e---------eecCCCCC
Q 040145 266 FFVSPRGQVYDPSTDNWES-MAV-GLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDS-W---------ETIEGPPL 333 (402)
Q Consensus 266 ~~~~~~~~~yd~~~~~W~~-~~~-~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~-W---------~~~~~~~~ 333 (402)
....+.+-+.|..+.+... +.. +.+..-++..+.-+|+..++.+...+.+.+||.++.+ + ..+. .+
T Consensus 250 ~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~--~v 327 (595)
T 1fwx_A 250 YQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA--EP 327 (595)
T ss_dssp SEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE--CC
T ss_pred eeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE--Ec
Confidence 1223467888988743322 111 1122223333344677666666668899999998642 1 1122 12
Q ss_pred CccccCCeEEEEeCCEEEEEecCceeeeEEEEeccc
Q 040145 334 PEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 334 p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~ 369 (402)
+...+-.|.+..-+|.+|+.-.-++. ..+|.++.
T Consensus 328 ~vG~gP~h~aF~~dG~aY~t~~ldsq--V~kwdi~~ 361 (595)
T 1fwx_A 328 ELGLGPLHTAFDGRGNAYTSLFLDSQ--VVKWNIED 361 (595)
T ss_dssp BCCSCEEEEEECTTSEEEEEETTTTE--EEEEEHHH
T ss_pred CCCCCcceEEECCCCeEEEEEecCCc--EEEEEhhH
Confidence 22212233444456788887665544 33455554
No 336
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=44.97 E-value=1.6e+02 Score=25.90 Aligned_cols=212 Identities=7% Similarity=-0.005 Sum_probs=101.4
Q ss_pred CCEEEEEeCccCCCCCCCceEEEEECCCCceeec--CCCc---cc-ccceEEEEE----CCEEEEEcCC----C---CCC
Q 040145 156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVM--NKMI---TA-RSFFASGVI----GGMIYVAGGS----S---ADL 218 (402)
Q Consensus 156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~--~~~~---~~-r~~~~~~~~----~~~iyv~GG~----~---~~~ 218 (402)
++.+|+.. . ....|.++|+..+.-..+ +.+. .+ ....++... .++|+++.-. + ...
T Consensus 24 ~g~~~vs~-l------~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~ 96 (334)
T 2p9w_A 24 RQVFYQSN-L------YKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSS 96 (334)
T ss_dssp TTEEEEEE-T------TTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCS
T ss_pred CCEEEEEe-c------cCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccccc
Confidence 45666543 2 234899999987654443 2211 11 122455552 4688885211 0 111
Q ss_pred CCCCeeEEEcCC---CC--cEEE-cCCCCCC-------C-cceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCC-
Q 040145 219 FELDSAEVLDPV---KG--NWRT-IASMGTN-------M-ASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDN- 281 (402)
Q Consensus 219 ~~~~~~~~yd~~---t~--~W~~-~~~~~~~-------~-~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~- 281 (402)
.....+.+||+. |+ .|.. +...... + ....-+++ +|.+|+.+...- ..|+++|+....
T Consensus 97 ~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~-----~~I~rV~pdG~~~ 171 (334)
T 2p9w_A 97 HGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGM-----PAIARVSADGKTV 171 (334)
T ss_dssp SSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESS-----CEEEEECTTSCCE
T ss_pred CCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCC-----CeEEEEeCCCCEE
Confidence 114679999988 54 3543 2111111 1 12333333 689999766420 369999997553
Q ss_pred --eeeccccccCCCce--eEEEE-CCEEEEEeccCCcEEEEEeCCCCceeecCCC--CCCccccCCeEE--EEeCCEEEE
Q 040145 282 --WESMAVGLREGWTG--SSVVV-YEHLFVVSELERMKLKVYDPSTDSWETIEGP--PLPEQICKPFAV--NACDCRVYV 352 (402)
Q Consensus 282 --W~~~~~~~~~~~~~--~~~~~-~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~--~~p~~~~~~~~~--~~~~~~i~v 352 (402)
|..-.+ ....+.+ ..+.. +|+++++... ...++.||..+....+++.. .........-++ .-.+|++++
T Consensus 172 ~~~~~~~~-~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vll 249 (334)
T 2p9w_A 172 STFAWESG-NGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVL 249 (334)
T ss_dssp EEEEECCC-CSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEE
T ss_pred eeeeecCC-CcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEE
Confidence 432221 1112221 22444 5655555554 67899999885332112100 000011111232 237899866
Q ss_pred EecCceeeeEEEEecccccccCceeeeEEEEeCC
Q 040145 353 VGRNLHVAVGHITRLSTSEKKWSFSVQWQVVDAP 386 (402)
Q Consensus 353 ~GG~~~~~~~~v~~~~~~~~~~~~~~~W~~~~~~ 386 (402)
+.-..+. ++.+.. .+.|..-..=...+.+
T Consensus 250 V~~~~~~----~~~l~S-~DgW~sa~~~g~~~~~ 278 (334)
T 2p9w_A 250 VGARAPY----AISFRS-WDNWKSANIKKTKRSE 278 (334)
T ss_dssp EEEETTE----EEEEEC-SSTTSEEEEEEEECGG
T ss_pred EEcCCCC----EEEEEC-CCCcceeEEeeeecCc
Confidence 6653332 233322 2337655554445553
No 337
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=44.48 E-value=60 Score=31.58 Aligned_cols=104 Identities=15% Similarity=0.140 Sum_probs=52.4
Q ss_pred EEEECCEEEEEcccccCCccCCcEEEEeCCCC-Ceee--ccc---cccCCCceeEEE--ECCEEEEEeccCCcEEEEEeC
Q 040145 249 AAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTD-NWES--MAV---GLREGWTGSSVV--VYEHLFVVSELERMKLKVYDP 320 (402)
Q Consensus 249 ~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~-~W~~--~~~---~~~~~~~~~~~~--~~~~l~~~gg~~~~~~~~yd~ 320 (402)
.+..+|++|+|-|. ..++++.... .... +.. .+|. ...++.. .++++|+|-|. ..|+|+.
T Consensus 449 it~~rg~~yfFKg~--------~yWr~~~~~~~~~~P~~Is~~wp~LP~-~IDAA~~~~~~~k~yFFkG~---~yWry~~ 516 (631)
T 1ck7_A 449 IAQIRGEIFFFKDR--------FIWRTVTPRDKPMGPLLVATFWPELPE-KIDAVYEAPQEEKAVFFAGN---EYWIYSA 516 (631)
T ss_dssp EEECSSSEEEECSS--------EEEEESCTTSCCEEEEEGGGTCTTSCS-SCSBCCEETTTTEEEEEETT---EEEEEET
T ss_pred eEecCCcEEEEcCC--------EEEEEcCCCCCCCCceeccccCCCCCc-cceEEEEECCCCEEEEEecC---EEEEECC
Confidence 44568999999774 4666665432 1111 111 1111 1122222 26889999665 7999986
Q ss_pred CCC--ce-eecCCCCCCccc-cCCeEEE-EeCCEEEEEecCceeeeEEEEecccc
Q 040145 321 STD--SW-ETIEGPPLPEQI-CKPFAVN-ACDCRVYVVGRNLHVAVGHITRLSTS 370 (402)
Q Consensus 321 ~~~--~W-~~~~~~~~p~~~-~~~~~~~-~~~~~i~v~GG~~~~~~~~v~~~~~~ 370 (402)
.+. -+ +.|..+.+|... ...++.. ..++++|++-|. ..|+||+.
T Consensus 517 ~~l~~GYPk~Is~~G~P~~~~~IDAAf~~~~~gktYFFkG~------~ywryd~~ 565 (631)
T 1ck7_A 517 STLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGD------KFWRYNEV 565 (631)
T ss_dssp TEECTTCCEEGGGGTCCTTCCCCCBCCCCTTTCEEEEEETT------EEEEEETT
T ss_pred CccccCCCccchhcCCCCCCCcceeEEEecCCCeEEEEECC------EEEEEcCC
Confidence 321 00 112111223211 1222222 147899999884 47778754
No 338
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=42.20 E-value=1.9e+02 Score=25.78 Aligned_cols=92 Identities=12% Similarity=0.175 Sum_probs=50.0
Q ss_pred CeeEEE--cCCCCcEEEcCCC--C--CC-CcceeEEEE----CCEEEEEcccccCCccCCcEEEEeC---CCCCeee--c
Q 040145 222 DSAEVL--DPVKGNWRTIASM--G--TN-MASYDAAVL----DGKLLVTEGWLWPFFVSPRGQVYDP---STDNWES--M 285 (402)
Q Consensus 222 ~~~~~y--d~~t~~W~~~~~~--~--~~-~~~~~~~~~----~g~ly~~gG~~~~~~~~~~~~~yd~---~~~~W~~--~ 285 (402)
+.+.+| |+.++.++.+... | .. +.-++.+.+ .+++|++-.... ..+..|++ ..++.+. +
T Consensus 99 n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~-----G~~~q~~l~~~~~g~~~~~lV 173 (355)
T 3amr_A 99 NTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKE-----GEFEQYELKADKNGYISGKKV 173 (355)
T ss_dssp CEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSS-----SEEEEEEEEECTTSCEEEEEE
T ss_pred CeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCC-----CeEEEEEEEeCCCCcccceEE
Confidence 456666 8899999999654 4 33 445555553 366666644322 14556555 3443322 2
Q ss_pred cccccCCCceeEEEE---CCEEEEEeccCCcEEEEEeCC
Q 040145 286 AVGLREGWTGSSVVV---YEHLFVVSELERMKLKVYDPS 321 (402)
Q Consensus 286 ~~~~~~~~~~~~~~~---~~~l~~~gg~~~~~~~~yd~~ 321 (402)
.. ++.+...-.|++ .++||+- .. ...||+||.+
T Consensus 174 R~-f~lgsq~EgcvvDd~~g~Lyv~-eE-d~GIw~~da~ 209 (355)
T 3amr_A 174 RA-FKMNSQTEGMAADDEYGRLYIA-EE-DEAIWKFSAE 209 (355)
T ss_dssp EE-EECSSCEEEEEEETTTTEEEEE-ET-TTEEEEEECS
T ss_pred EE-ecCCCCcceEEEcCCCCeEEEe-cc-cceEEEEeCC
Confidence 22 111112223555 4788874 43 3569999954
No 339
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=41.70 E-value=2.3e+02 Score=26.60 Aligned_cols=106 Identities=9% Similarity=0.095 Sum_probs=59.9
Q ss_pred CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCC-cceeEEEE---------CCE-EEEEcccccCCccCCcEE
Q 040145 205 GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNM-ASYDAAVL---------DGK-LLVTEGWLWPFFVSPRGQ 273 (402)
Q Consensus 205 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~-~~~~~~~~---------~g~-ly~~gG~~~~~~~~~~~~ 273 (402)
++.||++-.. ...+.++|++++..+.+....... .......+ +|. ||+..-..+.......++
T Consensus 151 ~~~Lyv~~~~------~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~ 224 (496)
T 3kya_A 151 KDHLYICYDG------HKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVY 224 (496)
T ss_dssp EEEEEEEEET------EEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEE
T ss_pred CCEEEEEECC------CCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEE
Confidence 3679998653 356899999999988875443311 12333333 454 888744321101123578
Q ss_pred EEeCCC-CCee------eccccccCCCceeEEEE---CCEEEEEeccCCcEEEEEeCC
Q 040145 274 VYDPST-DNWE------SMAVGLREGWTGSSVVV---YEHLFVVSELERMKLKVYDPS 321 (402)
Q Consensus 274 ~yd~~~-~~W~------~~~~~~~~~~~~~~~~~---~~~l~~~gg~~~~~~~~yd~~ 321 (402)
.++... +.|. .++. .. ....+.+ ++.||+.--. ...+++||++
T Consensus 225 ~i~r~~~G~~~~~~~~~~v~~-~~---~p~giavdp~~g~LYvtd~~-~g~V~r~d~~ 277 (496)
T 3kya_A 225 IIKRNADGTFDDRSDIQLIAA-YK---QCNGATIHPINGELYFNSYE-KGQVFRLDLV 277 (496)
T ss_dssp EEECCTTSCCSTTSCEEEEEE-ES---CCCCEEECTTTCCEEEEETT-TTEEEEECHH
T ss_pred EEecCCCCceeecccceeecc-CC---CceEEEEcCCCCeEEEEECC-CCEEEEEecc
Confidence 887554 4664 2221 11 1112233 5788887543 5679999997
No 340
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=41.05 E-value=2.5e+02 Score=27.03 Aligned_cols=181 Identities=10% Similarity=0.041 Sum_probs=96.1
Q ss_pred ceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCc-eeecCCCcccccceEEEE--ECCEEEEEcCCCCCCCCCCee
Q 040145 148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNR-WTVMNKMITARSFFASGV--IGGMIYVAGGSSADLFELDSA 224 (402)
Q Consensus 148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~-W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~ 224 (402)
.+......++.||+.-- ....++++++.... +..+-.-. -....++++ .+++||+.-.. ...+
T Consensus 43 ~~ld~~~~~~~ly~sD~-------~~~~I~r~~~~g~~~~~~v~~~~-~~~P~GlAvD~~~~~ly~~d~~------~~~I 108 (619)
T 3s94_A 43 AAVDFVFSHGLIYWSDV-------SEEAIKRTEFNKTESVQNVVVSG-LLSPDGLACDWLGEKLYWTDSE------TNRI 108 (619)
T ss_dssp EEEEEETTTTEEEEEET-------TTTEEEEEEC-----CEEEECSS-CSCEEEEEEETTTTEEEEEETT------TTEE
T ss_pred EEEEEEeCCCEEEEEEC-------CCCeEEEEEccCCCceEEEEeCC-CCCcCeEEEEecCCEEEEEeCC------CCEE
Confidence 34444445788998742 23478888887542 22221111 022334554 37899998643 5678
Q ss_pred EEEcCCCCcEEEc--CCCCCCCcceeEEE--ECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE
Q 040145 225 EVLDPVKGNWRTI--ASMGTNMASYDAAV--LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV 300 (402)
Q Consensus 225 ~~yd~~t~~W~~~--~~~~~~~~~~~~~~--~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 300 (402)
+++|+....=+.+ ..+..|+ ..++ .+|.||+..-.. ...+++.++....-..+... ...+-...+.-
T Consensus 109 ~v~~~dG~~~~~l~~~~l~~P~---~Iavdp~~g~ly~tD~g~-----~~~I~r~~~dG~~~~~l~~~-~~~~P~Glald 179 (619)
T 3s94_A 109 EVSNLDGSLRKVLFWQELDQPR---AIALDPSSGFMYWTDWGE-----VPKIERAGMDGSSRFIIINS-EIYWPNGLTLD 179 (619)
T ss_dssp EEEETTSCSCEEEECSSCSCCC---CEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCEEEECS-SCSSEEEEEEE
T ss_pred EEEECCCCCEEEEEeCCCCCCc---eEEEecCCCeEEEeccCC-----CCEEEEEECCCCceEEEEeC-CCCCCcEEEEE
Confidence 9999876543333 2333332 2333 368899975211 23688888865443333211 11111112222
Q ss_pred --CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecC
Q 040145 301 --YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRN 356 (402)
Q Consensus 301 --~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~ 356 (402)
+++||+.-.. ...|+++|++...=..+.. ......+++++.++.||+.--.
T Consensus 180 ~~~~~LY~aD~~-~~~I~~~~~dG~~~~~~~~----~~~~~P~gi~~~~~~ly~td~~ 232 (619)
T 3s94_A 180 YEEQKLYWADAK-LNFIHKSNLDGTNRQAVVK----GSLPHPFALTLFEDILYWTDWS 232 (619)
T ss_dssp TTTTEEEEEETT-TCCEEEESSSCCEEC-------------CCCEEESSSEEEEECTT
T ss_pred ccCCEEEEEeCC-CCeEEEecCCCCccEEEEe----CCCCCceEEEEeCCEEEEecCC
Confidence 6899998654 6789999997643333321 1123446788888899987643
No 341
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=40.15 E-value=2.8e+02 Score=27.34 Aligned_cols=148 Identities=9% Similarity=0.026 Sum_probs=75.7
Q ss_pred CceEEEEECCCC--ce--eecCCCcccccceEEE-EECCEEEEEcCCCCCCCCCCeeEEEcCCC-CcEEE-cCCCCCCCc
Q 040145 173 LDLVLKYEMQKN--RW--TVMNKMITARSFFASG-VIGGMIYVAGGSSADLFELDSAEVLDPVK-GNWRT-IASMGTNMA 245 (402)
Q Consensus 173 ~~~~~~~d~~t~--~W--~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~t-~~W~~-~~~~~~~~~ 245 (402)
.++++++|..+. .+ +.+.+-.. ...+... ..++.||+....++.. ...++.+|..+ ..|+. +-.......
T Consensus 294 ~~~l~~~d~~~~~~~~~~~~l~~~~~-~~~~s~~~~~g~~l~~~t~~~~a~--~~~L~~~d~~~~~~~~~~li~~~~~~~ 370 (751)
T 2xe4_A 294 TAEVHLLDLRKGNAHNTLEIVRPREK-GVRYDVQMHGTSHLVILTNEGGAV--NHKLLIAPRGQPSDWSHVLVDHSEDVF 370 (751)
T ss_dssp CEEEEEEESSSCTTCCCEEESSCCCT-TCCEEEEEETTTEEEEEECTTTCT--TCEEEEEETTSTTCCCCEEECCCSSEE
T ss_pred CceEEEEECCCCCCCceeEEeecCCC-CceEEEeeeeCCEEEEEeCCCCCC--CcEEEEEcCCCcccceeeEECCCCCcE
Confidence 568999999875 45 55432111 1122222 2377888886554111 45788899876 57875 321111111
Q ss_pred ceeEEEECCEEEEEcccccCCccCCcEEEEeC-------CCCC-eeeccccccCCCceeEE------EECC-EEEEE-ec
Q 040145 246 SYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDP-------STDN-WESMAVGLREGWTGSSV------VVYE-HLFVV-SE 309 (402)
Q Consensus 246 ~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~-------~~~~-W~~~~~~~~~~~~~~~~------~~~~-~l~~~-gg 309 (402)
.......++.|++....++ ...++++|+ .++. -..+. .+........ ..++ .+++. .+
T Consensus 371 l~~~~~~~~~lv~~~~~~g----~~~l~~~dl~~~~~~~~~g~~~~~l~--l~~~~~~~~~~~~~~~~~~~~~l~~~~ss 444 (751)
T 2xe4_A 371 MESIAVRSNYLVVAGRRAG----LTRIWTMMADSQDGVFKAGTGLREVV--MEEPIFTVHLVESQMLEYEEPTFRMEYSS 444 (751)
T ss_dssp EEEEEECSSEEEEEEEETT----EEEEEEEECCTTTSCCCTTTCCEECC--CCCSSCEEEECGGGCCCTTCSCEEEEEEE
T ss_pred EEEEEEECCEEEEEEEeCC----EEEEEEEecccccccccCCccceEEC--CCCceeEEEeccCcccCCCCCEEEEEEeC
Confidence 1222334677777654322 236888886 3444 44443 2221111111 1133 33333 22
Q ss_pred cC-CcEEEEEeCCCCceeecC
Q 040145 310 LE-RMKLKVYDPSTDSWETIE 329 (402)
Q Consensus 310 ~~-~~~~~~yd~~~~~W~~~~ 329 (402)
.. ...++.||..+++.+.+.
T Consensus 445 ~~~P~~~~~~d~~~~~~~~l~ 465 (751)
T 2xe4_A 445 LATPNTWFDVSPQDHSRTAVK 465 (751)
T ss_dssp TTEEEEEEEECTTTCCEEEEE
T ss_pred CCCCCEEEEEECCCCcEEEEe
Confidence 22 357889999887766654
No 342
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=38.55 E-value=1.3e+02 Score=25.58 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=11.7
Q ss_pred eEEEEECCEEEEEcCCC
Q 040145 199 FASGVIGGMIYVAGGSS 215 (402)
Q Consensus 199 ~~~~~~~~~iyv~GG~~ 215 (402)
|+++.-++++|..|-..
T Consensus 35 h~~~l~~G~v~~wG~n~ 51 (282)
T 3qhy_B 35 HGLALKGGKVLGWGANL 51 (282)
T ss_dssp EEEEEETTEEEEEECCS
T ss_pred eEEEEECCEEEEEeCCC
Confidence 44444588999998653
No 343
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=37.41 E-value=3.2e+02 Score=27.20 Aligned_cols=194 Identities=13% Similarity=0.179 Sum_probs=92.1
Q ss_pred EEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEcc--CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCC-Cc----
Q 040145 121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPR--EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNK-MI---- 193 (402)
Q Consensus 121 ~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~-~~---- 193 (402)
+++-+-.-.+|+.+.....+..-.......+++.. .+.+|+..|..... ....+++=+=.-.+|+.+.. ++
T Consensus 39 v~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~--~~~~v~~S~DgG~TW~~~~~~~~~~~~ 116 (789)
T 1sqj_A 39 AYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGD--EWAAFYVSEDRGQSFTIYESPFPMGAN 116 (789)
T ss_dssp EEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTS--SCCEEEEESSTTSEEEEEECSSCCCTT
T ss_pred EEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCC--cccEEEEECCCCCcceeccCCcccCcc
Confidence 56666667789987642210000012233333321 24678776542100 11233333223347998742 11
Q ss_pred -ccc-cceEEEEE---CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCC---CCcceeEEEE----CCEEEEEcc
Q 040145 194 -TAR-SFFASGVI---GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGT---NMASYDAAVL----DGKLLVTEG 261 (402)
Q Consensus 194 -~~r-~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~---~~~~~~~~~~----~g~ly~~gG 261 (402)
..| ....+++. .+.+|+ |.. ...++.=+=.-.+|+.+..++. .......+.+ .+.||+...
T Consensus 117 ~~~~~~~~~iav~p~~~~~v~~-g~~------~~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~ 189 (789)
T 1sqj_A 117 DMGRNNGERLAVNPFNSNEVWM-GTR------TEGIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASAT 189 (789)
T ss_dssp STTTTSCCCEEEETTEEEEEEE-ECS------SSCEEEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEES
T ss_pred CCCccceeEEEEcCCCCCEEEE-Eec------cCCEEEECCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEc
Confidence 112 12234443 245665 332 1223322222357999876442 1122233333 246777543
Q ss_pred cccCCccCCcEEEEeCCCCCeeeccccccCCC------------------ceeEEEE-CCEEEEEecc-------CCcEE
Q 040145 262 WLWPFFVSPRGQVYDPSTDNWESMAVGLREGW------------------TGSSVVV-YEHLFVVSEL-------ERMKL 315 (402)
Q Consensus 262 ~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~------------------~~~~~~~-~~~l~~~gg~-------~~~~~ 315 (402)
.. ..+++=.-.-.+|+.+.. .+... +...+.- ++.||+..+. ....+
T Consensus 190 ~~------~~v~~S~DgG~TW~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~p~~g~~g~l 262 (789)
T 1sqj_A 190 AP------QGMYVTHDGGVSWEPVAG-QPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPGPWGVTFGEV 262 (789)
T ss_dssp ST------TCEEEESSTTSSCEECTT-CCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCSSSCCCCCCE
T ss_pred CC------CeEEEEcCCCcCcccCCC-CcCccccccccccCcccccccccceeEEcCCCCeEEEEEecCCCCCCCCCceE
Confidence 21 134433334568998873 33322 1111111 7889987421 24468
Q ss_pred EEEeCCCCceeecCC
Q 040145 316 KVYDPSTDSWETIEG 330 (402)
Q Consensus 316 ~~yd~~~~~W~~~~~ 330 (402)
++.+-...+|+++..
T Consensus 263 ~~S~DgG~tW~~~~~ 277 (789)
T 1sqj_A 263 WRQNRTSGAWDDITP 277 (789)
T ss_dssp EEEETTTCCEEECCC
T ss_pred EEEeCCCCceEECcC
Confidence 888888899999873
No 344
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=35.72 E-value=4e+02 Score=27.92 Aligned_cols=168 Identities=12% Similarity=0.036 Sum_probs=79.8
Q ss_pred ceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcE-EEcC----CCCCCCcceeEEEE--C-CEEEEEcccccCCccC
Q 040145 198 FFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNW-RTIA----SMGTNMASYDAAVL--D-GKLLVTEGWLWPFFVS 269 (402)
Q Consensus 198 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W-~~~~----~~~~~~~~~~~~~~--~-g~ly~~gG~~~~~~~~ 269 (402)
++++....+.+ ++|......- ...++.|+.....| .... ++.....+++.++. + +..|++|.-.. ...
T Consensus 336 GfSa~~t~d~~-~~GapG~~~w-~G~v~~~~~~~~~~~~~~~~~~~~~~~sylGySVa~~~~~g~~~~v~GAP~~--~~~ 411 (1095)
T 3k6s_A 336 GFSAVFTPDGP-VLGAVGSFTW-SGGAFLYPPNMSPTFINMSQENVDMRDSYLGYSTELALWKGVQSLVLGAPRY--QHT 411 (1095)
T ss_dssp TSSEECCTTCC-EEEESCSTTT-TBEEEECCSSSCCEEECCCSSCCCCCSCCBTSSEECCCCSSSCEEEEEETTG--GGT
T ss_pred cccceecCCcc-eEcccccCCc-cceeEEecCCCcceeeccccccccccccccceeeEEeccCCceEEEEEcccc--ccc
Confidence 44444444444 6776544333 55678888765443 3221 12222234444432 2 34556653221 112
Q ss_pred CcEEEEeCCCCCeeeccccc---cCCCceeE-EEE--C----CEEEEEeccC------CcEEEEEeCCC--CceeecCCC
Q 040145 270 PRGQVYDPSTDNWESMAVGL---REGWTGSS-VVV--Y----EHLFVVSELE------RMKLKVYDPST--DSWETIEGP 331 (402)
Q Consensus 270 ~~~~~yd~~~~~W~~~~~~~---~~~~~~~~-~~~--~----~~l~~~gg~~------~~~~~~yd~~~--~~W~~~~~~ 331 (402)
-.+++|....+.|....... ...+++.+ +.. | ..++++|.-. ...+++|.... ..|.....+
T Consensus 412 G~V~i~~~~~~~~~~~~~~~g~~~gs~fG~sva~~DvngDG~~DllvvGAP~~~~~~~~G~Vyvy~~~~~~~~~~~~~~l 491 (1095)
T 3k6s_A 412 GKAVIFTQVSRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVCPLPRGWRRWWCDAVL 491 (1095)
T ss_dssp CEEEEEECCTTTCCEEEEECCSSTTSCTTSCEEEECSSSSSSCCEEEEECSSCCSSCCCBCEEEEECCSSTTCCCSCSSC
T ss_pred ceEEEEEecCCcceEEeecccCcccCcCCceEEEEEeCCCCCccEEEECCccccCcCCCCEEEEEEeCCCCcceeeeEEe
Confidence 36888988877898754311 12234444 332 1 3576776321 34688885433 458754322
Q ss_pred CCC---ccccCCeEEEEeC-----C--EEEEEecCceeeeEEEEeccc
Q 040145 332 PLP---EQICKPFAVNACD-----C--RVYVVGRNLHVAVGHITRLST 369 (402)
Q Consensus 332 ~~p---~~~~~~~~~~~~~-----~--~i~v~GG~~~~~~~~v~~~~~ 369 (402)
.-. ...+.+.+++..+ | -|+|-........+.+|+|.-
T Consensus 492 ~g~~~~~~~~FG~sva~~gD~NgDG~~Dl~VGAP~~~~~~G~vyi~~g 539 (1095)
T 3k6s_A 492 YGEQGHPWGRFGAALTVLGDVNGDKLTDVVIGAPGEEENRGAVYLFHG 539 (1095)
T ss_dssp CCCCSCSSCCBTSCEEEEECSSSSSCCEEEEECTTTTTSCCBEEEEEB
T ss_pred ecccCCccccCccceEeecccCCCCCcCEEEeCCcCCCCCCEEEEecC
Confidence 111 1234455555432 1 154332222333456777753
No 345
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=34.22 E-value=2.2e+02 Score=26.79 Aligned_cols=147 Identities=9% Similarity=-0.080 Sum_probs=68.7
Q ss_pred CEEEEEeCccCCCCCCCceEEEEECCCCcee-----ecC-C---Ccccccc-eEEEEECCEEEEEcCCCCCCCCCCeeEE
Q 040145 157 GTLFVCGGMVSDVDCPLDLVLKYEMQKNRWT-----VMN-K---MITARSF-FASGVIGGMIYVAGGSSADLFELDSAEV 226 (402)
Q Consensus 157 ~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~-----~~~-~---~~~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 226 (402)
+.+++.|+.+ ..+.+||..++.-. .+. + +...... .+++...+..++.|+. -..+.+
T Consensus 225 ~~~LAs~s~D-------gtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~------DgtV~l 291 (524)
T 2j04_B 225 VGCLSFVSQE-------GTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFK------NGFVAE 291 (524)
T ss_dssp SCEEEEEETT-------SCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEET------TSEEEE
T ss_pred CceEEEEecC-------CeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeC------CCEEEE
Confidence 3566666652 26888888765311 110 0 1111111 2233334445666665 356889
Q ss_pred EcCCCCcEEEcCCCCCCCcceeEE--EE--CC-EEEEEcccccCCccCCcEEEEeCCCCCeee-ccccccCCCceeEEEE
Q 040145 227 LDPVKGNWRTIASMGTNMASYDAA--VL--DG-KLLVTEGWLWPFFVSPRGQVYDPSTDNWES-MAVGLREGWTGSSVVV 300 (402)
Q Consensus 227 yd~~t~~W~~~~~~~~~~~~~~~~--~~--~g-~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~~~~~~~~ 300 (402)
||..+..- ....+.........+ .. ++ .+++.|+.+ ..+.++|+.+.+-.. +............+..
T Consensus 292 WD~~~~~~-~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D------~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fs 364 (524)
T 2j04_B 292 FDLTDPEV-PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVD------GYFYIFNPKDIATTKTTVSRFRGSNLVPVVYC 364 (524)
T ss_dssp EETTBCSS-CSEEEECSSSCEEEEEEECCTTSCCEEEEEETT------SEEEEECGGGHHHHCEEEEECSCCSCCCEEEE
T ss_pred EECCCCCC-ceEEeecccccEEEEEEEcCCCCCeEEEEeccC------CeEEEEECCCCCcccccccccccCcccceEeC
Confidence 99876420 000011111112222 22 34 677777754 368888886543111 1100110111122223
Q ss_pred -CCEEEEEeccCCcEEEEEeCCCCc
Q 040145 301 -YEHLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 301 -~~~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
++..++.|+. ...+..+|..+..
T Consensus 365 p~~~~l~s~~~-d~tv~lwd~~~~~ 388 (524)
T 2j04_B 365 PQIYSYIYSDG-ASSLRAVPSRAAF 388 (524)
T ss_dssp TTTTEEEEECS-SSEEEEEETTCTT
T ss_pred CCcCeEEEeCC-CCcEEEEECcccc
Confidence 4666776665 4578889987643
No 346
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=33.04 E-value=59 Score=28.82 Aligned_cols=58 Identities=9% Similarity=0.035 Sum_probs=29.2
Q ss_pred CCeeEEEcCCCCc--EEEcCC--CCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCee
Q 040145 221 LDSAEVLDPVKGN--WRTIAS--MGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWE 283 (402)
Q Consensus 221 ~~~~~~yd~~t~~--W~~~~~--~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~ 283 (402)
...++.+|..+++ |+.-.. .|.-.........++.+|++.... .-.++.||..++.|.
T Consensus 19 dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~-----dG~l~a~~~~~G~~~ 80 (339)
T 2be1_A 19 EGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFG-----DGNIYYFNAHQGLQK 80 (339)
T ss_dssp TSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCST-----TTEEEEEETTTEEEE
T ss_pred CCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECC-----CCEEEEEECCCCcEE
Confidence 3457888887764 876433 111000000001255677664211 126788888877554
No 347
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=31.09 E-value=2.4e+02 Score=24.84 Aligned_cols=103 Identities=7% Similarity=0.021 Sum_probs=52.4
Q ss_pred EEEEEcCCCCCCCCCCeeEEEcCCCCcEE---EcCCCCCCCcceeEEEE----------CCEEEEEcccccCCccCCcEE
Q 040145 207 MIYVAGGSSADLFELDSAEVLDPVKGNWR---TIASMGTNMASYDAAVL----------DGKLLVTEGWLWPFFVSPRGQ 273 (402)
Q Consensus 207 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~---~~~~~~~~~~~~~~~~~----------~g~ly~~gG~~~~~~~~~~~~ 273 (402)
.+++.|+. -..+.++|..++.-. .+..+.........+.+ ++++++.||.+ ..+.
T Consensus 102 ~~las~~~------d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D------~tv~ 169 (393)
T 4gq1_A 102 LFLACVCQ------DNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD------CTLI 169 (393)
T ss_dssp EEEEEEET------TSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT------SEEE
T ss_pred CEEEEEeC------CCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC------CeEE
Confidence 44455554 345677777766432 23333332222223322 67888888864 3678
Q ss_pred EEeCCCCCeeeccccccCCCceeEEE-E-CC-EEEEEeccCCcEEEEEeCCCCc
Q 040145 274 VYDPSTDNWESMAVGLREGWTGSSVV-V-YE-HLFVVSELERMKLKVYDPSTDS 324 (402)
Q Consensus 274 ~yd~~~~~W~~~~~~~~~~~~~~~~~-~-~~-~l~~~gg~~~~~~~~yd~~~~~ 324 (402)
++|+.++.=.... ........++. . ++ .+++.|+. ...+.+||..+.+
T Consensus 170 ~Wd~~~~~~~~~~--~~~~~~v~~v~~~p~~~~~l~~~~~-d~~v~~wd~~t~~ 220 (393)
T 4gq1_A 170 IWRLTDEGPILAG--YPLSSPGISVQFRPSNPNQLIVGER-NGNIRIFDWTLNL 220 (393)
T ss_dssp EEEEETTEEEEEE--EECSSCEEEEEEETTEEEEEEEEET-TSEEEEEETTCCC
T ss_pred EEECCCCceeeee--cCCCCCcEEEEECCCCCceEEecCC-CCEEEEEECCCCc
Confidence 8887654311111 11111112232 2 34 35555554 5689999987764
No 348
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=30.82 E-value=2.1e+02 Score=25.45 Aligned_cols=116 Identities=6% Similarity=-0.178 Sum_probs=59.9
Q ss_pred CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCC--CCCCceEEEEEC
Q 040145 104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDV--DCPLDLVLKYEM 181 (402)
Q Consensus 104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~--~~~~~~~~~~d~ 181 (402)
...+|+.....+.-...+.++|+.+.+-.. .++.+. .. +.+....+..+|+........ ....+.+.++|+
T Consensus 31 ~~~~yV~~~~~~~~~d~vsvID~~t~~v~~--~i~vG~----~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~ 103 (368)
T 1mda_H 31 SRRSHITLPAYFAGTTENWVSCAGCGVTLG--HSLGAF----LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP 103 (368)
T ss_dssp TTEEEEEECTTTCSSEEEEEEETTTTEEEE--EEEECT----TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT
T ss_pred CCeEEEECCccCCccceEEEEECCCCeEEE--EEeCCC----CC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 467888754322212278899988876543 233222 11 444444456888875211000 012468999999
Q ss_pred CCCceeecCCCc-cc-----ccceEEEEE--CCEEEEEcCCCCCCCCCCeeEE--EcCCC
Q 040145 182 QKNRWTVMNKMI-TA-----RSFFASGVI--GGMIYVAGGSSADLFELDSAEV--LDPVK 231 (402)
Q Consensus 182 ~t~~W~~~~~~~-~~-----r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~--yd~~t 231 (402)
.|++-..--+++ .+ ...+.+++. +..+|+.--. ..+.+.+ +|+.+
T Consensus 104 ~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~-----~~~~v~V~~iD~~t 158 (368)
T 1mda_H 104 VTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG-----SSAAAGLSVPGASD 158 (368)
T ss_dssp TTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS-----SSCEEEEEETTTEE
T ss_pred CCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccC-----CCCeEEEEEEchhh
Confidence 998633211111 11 122333333 3467776321 0345777 88887
No 349
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=27.55 E-value=1.5e+02 Score=28.62 Aligned_cols=94 Identities=13% Similarity=-0.017 Sum_probs=54.2
Q ss_pred ceEEEEECCCCceee-cCCCcccccceEEEEE-CC-EEEEEcCCCCCCCCCCeeEEEcCCCCc-E---------EEcCCC
Q 040145 174 DLVLKYEMQKNRWTV-MNKMITARSFFASGVI-GG-MIYVAGGSSADLFELDSAEVLDPVKGN-W---------RTIASM 240 (402)
Q Consensus 174 ~~~~~~d~~t~~W~~-~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~-W---------~~~~~~ 240 (402)
+.+-+.|+.+.+.+. +..+|.+...|++.+. ++ .+|+.+.. .+.+.+||..+.. + ..+..+
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~------s~~VsVid~~~~~~~~~~~l~~~~~v~~~v 327 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKL------SPTVTVLDVTRFDAVFYENADPRSAVVAEP 327 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTT------SSBEEEEEGGGHHHHHHSCCCGGGGEEECC
T ss_pred CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCC------CCeEEEEECcccccccccccCcccceEEEc
Confidence 457788888743333 3345566666777665 33 57777665 6789999998652 1 011122
Q ss_pred CCC-CcceeEEEECCEEEEEcccccCCccCCcEEEEeCCC
Q 040145 241 GTN-MASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPST 279 (402)
Q Consensus 241 ~~~-~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~ 279 (402)
+.. +-.|.+..-+|.+|+.-..+ +.+.++|.++
T Consensus 328 ~vG~gP~h~aF~~dG~aY~t~~ld------sqV~kwdi~~ 361 (595)
T 1fwx_A 328 ELGLGPLHTAFDGRGNAYTSLFLD------SQVVKWNIED 361 (595)
T ss_dssp BCCSCEEEEEECTTSEEEEEETTT------TEEEEEEHHH
T ss_pred CCCCCcceEEECCCCeEEEEEecC------CcEEEEEhhH
Confidence 222 12223333367788876542 4677788765
No 350
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=27.29 E-value=3.1e+02 Score=23.88 Aligned_cols=70 Identities=17% Similarity=0.106 Sum_probs=37.2
Q ss_pred CCEEEEEcccccC----CccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CC-EEEEEeccCCcEEEEEeCCCCce
Q 040145 253 DGKLLVTEGWLWP----FFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YE-HLFVVSELERMKLKVYDPSTDSW 325 (402)
Q Consensus 253 ~g~ly~~gG~~~~----~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~-~l~~~gg~~~~~~~~yd~~~~~W 325 (402)
++++|+....++. ....+.+.+||+++.+= +.. .+.+. ...+.+ +| .||+..+ +.+.+||.++.+-
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~--v~~-i~~~~-p~~ia~spdg~~l~v~n~---~~v~v~D~~t~~l 337 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR--VAR-IPGRD-ALSMTIDQQRNLMLTLDG---GNVNVYDISQPEP 337 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE--EEE-EECTT-CCEEEEETTTTEEEEECS---SCEEEEECSSSSC
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCcE--EEE-EecCC-eeEEEECCCCCEEEEeCC---CeEEEEECCCCcc
Confidence 4788887541110 11234799999988752 222 11111 222222 44 4554432 6899999988622
Q ss_pred eecC
Q 040145 326 ETIE 329 (402)
Q Consensus 326 ~~~~ 329 (402)
+.+.
T Consensus 338 ~~~~ 341 (361)
T 2oiz_A 338 KLLR 341 (361)
T ss_dssp EEEE
T ss_pred eeeE
Confidence 4444
No 351
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=26.41 E-value=4.8e+02 Score=25.79 Aligned_cols=206 Identities=11% Similarity=0.054 Sum_probs=0.0
Q ss_pred CcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEe---CccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEEC
Q 040145 129 YCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCG---GMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIG 205 (402)
Q Consensus 129 ~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~G---G~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~ 205 (402)
.+|..++..+..........-.+.......+|+.+ +. .+++=.-.-.+|+.+..++...........+
T Consensus 529 ~tW~~~~~~~~g~~~~~~~~i~v~~~~~~~~~~~~~~~~~---------~v~~S~D~G~tW~~~~~l~~~~~~i~~d~~~ 599 (763)
T 3a0f_A 529 DSWTLFQTCVPSLEVGNGGTIAVGADGKTFVWSPSKADGK---------GPYTSSDYGKTWTAPSGLSKQTTGIAADRVQ 599 (763)
T ss_dssp SSCEECSSCCTTCBTTBCCEEEECTTSSCEEEECSSCCSS---------CCEEESSTTSCCBCCBSCCCCCSCEEECSSS
T ss_pred cCCccCCCCCcccccCCcceEEEecCCCcEEEEecccCCC---------ceEEeCCCCCCCeecCCCCCCcceEEEeccC
Q ss_pred CEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEc-CCCC---CCCcceeEEEE---CCEEEEEcccccCCccCCcEEEEeCC
Q 040145 206 GMIYVAGGSSADLFELDSAEVLDPVKGNWRTI-ASMG---TNMASYDAAVL---DGKLLVTEGWLWPFFVSPRGQVYDPS 278 (402)
Q Consensus 206 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~-~~~~---~~~~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~yd~~ 278 (402)
..++.+|. ...+++=.=.-.+|+.+ ..+| ..... .... ++.||+.+... .++.-+-.
T Consensus 600 ~~~~y~g~-------~g~v~~S~DgG~tW~~~~~~lp~~~~~~~~--i~~~~~~~~~l~~~~~~~-------~l~~S~D~ 663 (763)
T 3a0f_A 600 ANTFYVYV-------EGDFFVSTDGGKSYTKKGNGLPCCWTYTGT--PVTSNLRAGELWVSVKGV-------GIYHSTDF 663 (763)
T ss_dssp TTCEEEEE-------TTEEEEESSTTSBCEEECBTSCCSSCCCEE--EEECSSSTTCEEEEETTT-------EEEEESST
T ss_pred CCEEEEEc-------CCCEEEEeCCCcCccccccCCCcccCcccc--EEECCCCCCcEEEEcCCC-------eEEEEcCC
Q ss_pred CCCeeeccccccCCCceeEEEE--------CCEEEEEe-----ccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE
Q 040145 279 TDNWESMAVGLREGWTGSSVVV--------YEHLFVVS-----ELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA 345 (402)
Q Consensus 279 ~~~W~~~~~~~~~~~~~~~~~~--------~~~l~~~g-----g~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~ 345 (402)
-.+|+++.. .+.......+.+ .+.||++| +.. .+++-+-...+|+++. .-.........+..
T Consensus 664 G~tW~~~~~-~~~~~~~~~~~~g~~~~~~~~~~l~~~G~~~~~~~~--gl~~S~D~G~tW~~~~--~~~~~~~~~~~i~~ 738 (763)
T 3a0f_A 664 GNTFTALAG-SGSSLNPAVFSIGAPQTPNATETLFLWGIPSASQPE--GLYMSTDNGGLWTRLN--DDAHNYGGATVISG 738 (763)
T ss_dssp TSBCEECTT-BTTTBEEEEEEEECCSSTTSSCEEEEEEECSTTSCS--EEEEESSTTSCCEECS--CTTCCTBCEEEEEE
T ss_pred CCCceEccC-CCcccccceeEEeeecCCCCCceEEEEEEcccCCCc--EEEEeCCCCCCcEecc--CccccCCCcceEEe
Q ss_pred e---CCEEEEEecCceeeeEEE
Q 040145 346 C---DCRVYVVGRNLHVAVGHI 364 (402)
Q Consensus 346 ~---~~~i~v~GG~~~~~~~~v 364 (402)
. .++||+...+......++
T Consensus 739 ~p~~~~~v~~~T~GrGi~~g~~ 760 (763)
T 3a0f_A 739 DPRIYGRVYIGMNGRGIICAQA 760 (763)
T ss_dssp CTTSTTEEEEEEBSSCEEEEES
T ss_pred CCCCCCEEEEeCCCCeEEEEec
No 352
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=26.40 E-value=29 Score=20.33 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=16.3
Q ss_pred CCCCCCCCcHHHHHHhhccCc
Q 040145 49 AEPFIPGLPDDVALNCLLRLP 69 (402)
Q Consensus 49 ~~~~~~~Lp~dl~~~il~rlp 69 (402)
+..-+..||.|+-.++|+--.
T Consensus 17 D~eVF~~LP~dIQ~Ells~~~ 37 (48)
T 2kwv_A 17 DQEVFKQLPADIQEEILSGKS 37 (48)
T ss_dssp CGGGTTTSCHHHHHHHTTCCC
T ss_pred CHHHHHHCcHHHHHHHHhcch
Confidence 344688999999999998544
No 353
>2b4w_A Hypothetical protein, conserved; structural genomics, PSI, protein structure initiative, structural genomics of pathogenic protozoa consortium; 1.98A {Leishmania major} SCOP: b.67.2.5
Probab=25.19 E-value=2.1e+02 Score=24.52 Aligned_cols=59 Identities=8% Similarity=0.163 Sum_probs=41.2
Q ss_pred EECCEEEEEcCCCCCC-CCCCeeEEEcC-CCCcEEEcCCCCCCCcceeEEEECCEEEEEccc
Q 040145 203 VIGGMIYVAGGSSADL-FELDSAEVLDP-VKGNWRTIASMGTNMASYDAAVLDGKLLVTEGW 262 (402)
Q Consensus 203 ~~~~~iyv~GG~~~~~-~~~~~~~~yd~-~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~ 262 (402)
..+++.+++|-..... ...+.|..|.- ..+.|+.++.+.......-.+-++|.+. +||.
T Consensus 38 ~~~Gk~~I~GRVE~Rd~se~S~V~fFeet~~d~w~~v~~~~~~LqDPF~t~I~gEli-~GGv 98 (315)
T 2b4w_A 38 SYKGKTHIYGRVEKRDIWAASHVRLFEETGKDEFTAVPELSWELEDPYIAKINNEMI-FGGT 98 (315)
T ss_dssp EETTEEEEEEEEECTTCSSCCEEEEEEEEETTEEEECTTCCBSCEEEEEEEETTEEE-EEEE
T ss_pred eECCEEEEEeeeecCCCccccEEEEEEEcCCCceEECCCCEEEecCccEEEECCEEE-eeeE
Confidence 3578888888764333 22477888877 7899998888555666677778888885 4553
No 354
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=24.50 E-value=63 Score=28.62 Aligned_cols=56 Identities=5% Similarity=0.000 Sum_probs=29.2
Q ss_pred cEEEEeCCCC--Ceeecccc--ccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCcee
Q 040145 271 RGQVYDPSTD--NWESMAVG--LREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWE 326 (402)
Q Consensus 271 ~~~~yd~~~~--~W~~~~~~--~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~ 326 (402)
.++.+|.+++ .|+.-... ++..........++.+|++.......++.||..+..|.
T Consensus 21 ~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~ 80 (339)
T 2be1_A 21 GLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK 80 (339)
T ss_dssp CEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE
T ss_pred eEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE
Confidence 5778887765 48753320 00000000011355666664333557888888876554
No 355
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=24.50 E-value=3.8e+02 Score=23.98 Aligned_cols=65 Identities=12% Similarity=-0.020 Sum_probs=33.5
Q ss_pred CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCceee
Q 040145 253 DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWET 327 (402)
Q Consensus 253 ~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~ 327 (402)
++.+.+++ .. ..+..||..+..-.......... ..........+.++. +...+.++|.++..-..
T Consensus 96 d~~~L~v~-~~------~~l~v~dv~sl~~~~~~~~~~~~-v~~i~~~~p~~av~~--~dG~L~v~dl~~~~~~~ 160 (388)
T 1xip_A 96 HGDQVLVS-TR------NALYSLDLEELSEFRTVTSFEKP-VFQLKNVNNTLVILN--SVNDLSALDLRTKSTKQ 160 (388)
T ss_dssp ETTEEEEE-ES------SEEEEEESSSTTCEEEEEECSSC-EEEEEECSSEEEEEE--TTSEEEEEETTTCCEEE
T ss_pred CCCEEEEE-cC------CcEEEEEchhhhccCccceeecc-eeeEEecCCCEEEEE--CCCCEEEEEccCCcccc
Confidence 66655555 21 37899998776532211111111 111123344444432 24589999998765443
No 356
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=24.20 E-value=3.7e+02 Score=23.73 Aligned_cols=191 Identities=9% Similarity=0.033 Sum_probs=92.3
Q ss_pred cCCEEEEEeCccCCC-----CCCCceEEEEECCC--CceeecCCCc-----ccccceEEEEEC---C--EEEEEcCCCCC
Q 040145 155 REGTLFVCGGMVSDV-----DCPLDLVLKYEMQK--NRWTVMNKMI-----TARSFFASGVIG---G--MIYVAGGSSAD 217 (402)
Q Consensus 155 ~~~~i~v~GG~~~~~-----~~~~~~~~~~d~~t--~~W~~~~~~~-----~~r~~~~~~~~~---~--~iyv~GG~~~~ 217 (402)
.+|.+|+..|.-..+ ......+++||+.+ .+-+++.-.. ..-..|+..... + .|||+-.....
T Consensus 59 ~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~ 138 (355)
T 3sre_A 59 PNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSS 138 (355)
T ss_dssp TTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTC
T ss_pred CCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCC
Confidence 467777775421110 01355799999984 3444432111 123445665532 3 58888554211
Q ss_pred CCCCCeeEEEcCCCCcEEEcCC---CCCCCcceeEEEECCEEEEEcccc-cC----------CccCCcEEEEeCCCCCee
Q 040145 218 LFELDSAEVLDPVKGNWRTIAS---MGTNMASYDAAVLDGKLLVTEGWL-WP----------FFVSPRGQVYDPSTDNWE 283 (402)
Q Consensus 218 ~~~~~~~~~yd~~t~~W~~~~~---~~~~~~~~~~~~~~g~ly~~gG~~-~~----------~~~~~~~~~yd~~~~~W~ 283 (402)
. .-+++.+|+.++..+.+.. .+..+..-..+.-+|.+|+.+... .. ......++.||+. +.+
T Consensus 139 -s-~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~ 214 (355)
T 3sre_A 139 -S-TVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVR 214 (355)
T ss_dssp -C-EEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCE
T ss_pred -C-eEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEE
Confidence 1 3345556676666554432 233333444455589998865421 10 1122368889884 444
Q ss_pred eccccccCCCceeEEEECC-EEEEEeccCCcEEEEEeCCCC-ceeecCCCCCCccccCCeEEEE-e-CCEEEEEe
Q 040145 284 SMAVGLREGWTGSSVVVYE-HLFVVSELERMKLKVYDPSTD-SWETIEGPPLPEQICKPFAVNA-C-DCRVYVVG 354 (402)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~-~l~~~gg~~~~~~~~yd~~~~-~W~~~~~~~~p~~~~~~~~~~~-~-~~~i~v~G 354 (402)
.+...+.. -.+.+..-++ .+|+.-. ....+++||.+.+ +........++ ...=++++ . +|.||+..
T Consensus 215 ~~~~~l~~-pNGia~spDg~~lYvadt-~~~~I~~~~~~~~g~l~~~~~~~~~---g~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 215 VVAEGFDF-ANGINISPDGKYVYIAEL-LAHKIHVYEKHANWTLTPLRVLSFD---TLVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp EEEEEESS-EEEEEECTTSSEEEEEEG-GGTEEEEEEECTTSCEEEEEEEECS---SEEEEEEECTTTCCEEEEE
T ss_pred EeecCCcc-cCcceECCCCCEEEEEeC-CCCeEEEEEECCCCcEecCEEEeCC---CCCceEEEeCCCCcEEEEe
Confidence 43321111 1111122244 5777643 3668999987642 33322111122 11224444 3 48999954
No 357
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=23.45 E-value=4e+02 Score=23.79 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=11.8
Q ss_pred eEEEEccCCEEEEEeCc
Q 040145 149 RCVSIPREGTLFVCGGM 165 (402)
Q Consensus 149 ~~~~~~~~~~i~v~GG~ 165 (402)
..+++..++.||.+|..
T Consensus 132 h~~alt~~G~v~~wG~n 148 (406)
T 4d9s_A 132 HCLAVTMEGEVQSWGRN 148 (406)
T ss_dssp EEEEEETTSCEEEEECC
T ss_pred heEEEcCCCcEEEeCCC
Confidence 34445468899999854
No 358
>2b4w_A Hypothetical protein, conserved; structural genomics, PSI, protein structure initiative, structural genomics of pathogenic protozoa consortium; 1.98A {Leishmania major} SCOP: b.67.2.5
Probab=23.44 E-value=3.5e+02 Score=23.15 Aligned_cols=59 Identities=7% Similarity=0.075 Sum_probs=38.9
Q ss_pred EEECCEEEEEcccccCC-ccCCcEEEEeC-CCCCeeeccccccCCCcee-EEEECCEEEEEecc
Q 040145 250 AVLDGKLLVTEGWLWPF-FVSPRGQVYDP-STDNWESMAVGLREGWTGS-SVVVYEHLFVVSEL 310 (402)
Q Consensus 250 ~~~~g~ly~~gG~~~~~-~~~~~~~~yd~-~~~~W~~~~~~~~~~~~~~-~~~~~~~l~~~gg~ 310 (402)
...+|+.++.|-..... ...+.+..|.- ..++|+.++. +.-..... .+.++|.|. +||.
T Consensus 37 F~~~Gk~~I~GRVE~Rd~se~S~V~fFeet~~d~w~~v~~-~~~~LqDPF~t~I~gEli-~GGv 98 (315)
T 2b4w_A 37 FSYKGKTHIYGRVEKRDIWAASHVRLFEETGKDEFTAVPE-LSWELEDPYIAKINNEMI-FGGT 98 (315)
T ss_dssp EEETTEEEEEEEEECTTCSSCCEEEEEEEEETTEEEECTT-CCBSCEEEEEEEETTEEE-EEEE
T ss_pred eeECCEEEEEeeeecCCCccccEEEEEEEcCCCceEECCC-CEEEecCccEEEECCEEE-eeeE
Confidence 35689999988765444 12346777765 7889998887 44433333 367889875 4665
No 359
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=22.33 E-value=7e+02 Score=26.24 Aligned_cols=136 Identities=10% Similarity=0.142 Sum_probs=74.8
Q ss_pred CCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEc--CCCCCCCcceeE
Q 040145 172 PLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTI--ASMGTNMASYDA 249 (402)
Q Consensus 172 ~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~--~~~~~~~~~~~~ 249 (402)
....+++|+...++.+.+......-...+++.++|++.+.-| +.+.+||...++--.. ...+. ......
T Consensus 862 ~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~g~Lla~ig--------~~l~vy~l~~~~~L~~~~~~~~~-i~~~~l 932 (1158)
T 3ei3_A 862 KQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASIN--------STVRLYEWTTEKELRTECNHYNN-IMALYL 932 (1158)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEESSCEEEEEEETTEEEEEET--------TEEEEEEECTTSCEEEEEEECCC-SCEEEE
T ss_pred CceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeCCEEEEEcC--------CEEEEEECCCCceEEEEeecccc-EEEEEE
Confidence 466788998876666666554444445667778888766554 4678888765542111 00110 001122
Q ss_pred EEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccC-CcEEEEEeCC
Q 040145 250 AVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELE-RMKLKVYDPS 321 (402)
Q Consensus 250 ~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~-~~~~~~yd~~ 321 (402)
.+.++.|++ |-.. ..-.+..|+...++-..+.......+..++..++..-++.+... .-.+..|+++
T Consensus 933 ~~~~~~I~v-gD~~----~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 933 KTKGDFILV-GDLM----RSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp EEETTEEEE-EESS----BCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECTT
T ss_pred eccCCEEEE-EEhh----heEEEEEEEcCCCeEEEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEecCCC
Confidence 244666554 3221 12256789998888888876555555555544433333333322 2345666764
No 360
>2ydt_A EXO-1,5-alpha-L-arabinofuranobiosidase; hydrolase; 1.60A {Gibberella zeae} PDB: 2w5n_A* 2w5o_A* 2ydp_A
Probab=21.46 E-value=2.7e+02 Score=24.73 Aligned_cols=53 Identities=9% Similarity=0.194 Sum_probs=31.9
Q ss_pred CCEEEEEeccCCcEEEEEeCCC--CceeecCCCCCCccccCCeEEEEeC---CEEEEEecCc
Q 040145 301 YEHLFVVSELERMKLKVYDPST--DSWETIEGPPLPEQICKPFAVNACD---CRVYVVGRNL 357 (402)
Q Consensus 301 ~~~l~~~gg~~~~~~~~yd~~~--~~W~~~~~~~~p~~~~~~~~~~~~~---~~i~v~GG~~ 357 (402)
+|+|++.++. ...+++-+-.. .+|.++.. |....+.-.+...+ +.|+|+||+.
T Consensus 287 ~g~l~~s~~~-~~~v~~~~~~g~~~~W~~~~~---~~~~~Ys~~l~~~~~~~~~l~~~~~~~ 344 (367)
T 2ydt_A 287 NGTIVVSCGT-RSEIFTNQALGDASAWKKWDV---PQPTAYTRSLLTFQKDPDLLMIMGAGI 344 (367)
T ss_dssp TCEEEEECSS-CSCEEEESSTTCTTCCEEECC---SSCCCTTCEEEEETTEEEEEEEEECCC
T ss_pred CCeEEEEcCC-CceEEEECCCCCCCcceeccC---CCCCCCCcceEecCCCCCEEEEecCcc
Confidence 5889888764 44555443333 48999873 32223443455553 3799999754
No 361
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=20.04 E-value=3.8e+02 Score=22.30 Aligned_cols=193 Identities=10% Similarity=0.034 Sum_probs=99.2
Q ss_pred eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEEC-CEEEEEcCCCCCCCCCCeeEEE
Q 040145 149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIG-GMIYVAGGSSADLFELDSAEVL 227 (402)
Q Consensus 149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~y 227 (402)
+.+....++.||++... ...++.+|+.-..++.++- .......+++..+ +.+++.--. ...+.+|
T Consensus 31 Gla~~~~~~~L~aV~d~-------~~~I~~ld~~g~v~~~i~l-~g~~D~EGIa~~~~g~~~vs~E~------~~~l~~~ 96 (255)
T 3qqz_A 31 SLTWSAQSNTLFSTINK-------PAAIVEMTTNGDLIRTIPL-DFVKDLETIEYIGDNQFVISDER------DYAIYVI 96 (255)
T ss_dssp EEEEETTTTEEEEEEET-------TEEEEEEETTCCEEEEEEC-SSCSSEEEEEECSTTEEEEEETT------TTEEEEE
T ss_pred eeEEeCCCCEEEEEECC-------CCeEEEEeCCCCEEEEEec-CCCCChHHeEEeCCCEEEEEECC------CCcEEEE
Confidence 33443346789988654 3479999998555666532 2223344555554 454444221 3456777
Q ss_pred cCCCCc--EE--EcC-CCC--CCCcceeEEEE---CCEEEEEcccccCCccCCcEEEEeC--CCCCeeeccc----cccC
Q 040145 228 DPVKGN--WR--TIA-SMG--TNMASYDAAVL---DGKLLVTEGWLWPFFVSPRGQVYDP--STDNWESMAV----GLRE 291 (402)
Q Consensus 228 d~~t~~--W~--~~~-~~~--~~~~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~yd~--~~~~W~~~~~----~~~~ 291 (402)
+..++. |. .+. ++. ....+.-+..+ ++++|+..... ...++.|+- .+..-+.+.. ....
T Consensus 97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~-----p~~i~~~~g~~~~~~l~i~~~~~~~~~~~ 171 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN-----PIEVYKVNGLLSSNELHISKDKALQRQFT 171 (255)
T ss_dssp EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS-----SEEEEEEESTTCSSCCEEEECHHHHHTCC
T ss_pred EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC-----CceEEEEcccccCCceeeecchhhccccc
Confidence 655443 42 221 111 12233344444 45888875532 226777772 2211111110 0001
Q ss_pred CCceeEEEE---CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCc-------cccCCeEEEE-eCCEEEEEecCceee
Q 040145 292 GWTGSSVVV---YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPE-------QICKPFAVNA-CDCRVYVVGRNLHVA 360 (402)
Q Consensus 292 ~~~~~~~~~---~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~-------~~~~~~~~~~-~~~~i~v~GG~~~~~ 360 (402)
...-.++.+ .+++|+.... ...+..+|.+.+.=..+ .++. ......+++. .+|.|||+.-.
T Consensus 172 ~~d~S~l~~dp~tg~lliLS~~-s~~L~~~d~~g~~~~~~---~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~---- 243 (255)
T 3qqz_A 172 LDDVSGAEFNQQKNTLLVLSHE-SRALQEVTLVGEVIGEM---SLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEP---- 243 (255)
T ss_dssp SSCCCEEEEETTTTEEEEEETT-TTEEEEECTTCCEEEEE---ECSTTGGGCSSCCCSEEEEEECTTCCEEEEETT----
T ss_pred cCCceeEEEcCCCCeEEEEECC-CCeEEEEcCCCCEEEEE---EcCCccCCcccccCCCCeeEECCCCCEEEEcCC----
Confidence 111123333 6889999664 67899999886532222 2332 2234456654 57789999653
Q ss_pred eEEEEeccc
Q 040145 361 VGHITRLST 369 (402)
Q Consensus 361 ~~~v~~~~~ 369 (402)
+-+|+|.+
T Consensus 244 -n~~y~f~~ 251 (255)
T 3qqz_A 244 -NRFYRFTP 251 (255)
T ss_dssp -TEEEEEEC
T ss_pred -ceEEEEEe
Confidence 24677643
Done!