BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040146
(385 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AT7|A Chain A, Crystal Structure Of The Nf90-Nf45 Dimerisation Domain
Complex
pdb|4AT8|A Chain A, Crystal Structure Of The Nf90-Nf45 Dimerisation Domain
Complex With Atp
pdb|4AT8|C Chain C, Crystal Structure Of The Nf90-Nf45 Dimerisation Domain
Complex With Atp
pdb|4AT9|A Chain A, Crystal Structure Of The Nf90-Nf45 Dimerisation Domain
Complex With Utp
pdb|4ATB|A Chain A, Crystal Structure Of The Nf90-Nf45 Dimerisation Domain
Complex With Ctp
pdb|4ATB|C Chain C, Crystal Structure Of The Nf90-Nf45 Dimerisation Domain
Complex With Ctp
Length = 364
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 45 SIIGLYTTKFNAVRNIMPIAPSIINVRLEDVSDIKSWIKPPTNLLHNMNDTELFWR 100
SI+ L T N + N++ +AP V++E+V + S+ K HN+ D + +
Sbjct: 47 SILSLVTKINNVIDNLI-VAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILK 101
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
Query: 28 LKFMQIFLMFLVVGL--------CFSIIGLYTTKFNAVR-NIMPIAPSIINVRLEDV--S 76
LK+M+ F FL +GL C + +GL A++ NI+P ++ + LE++
Sbjct: 644 LKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNILPFCDEVMQLLLENLGNE 703
Query: 77 DIKSWIKP 84
++ +KP
Sbjct: 704 NVHRSVKP 711
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
Query: 28 LKFMQIFLMFLVVGL--------CFSIIGLYTTKFNAVR-NIMPIAPSIINVRLEDV--S 76
LK+M+ F FL +GL C + +GL A++ NI+P ++ + LE++
Sbjct: 644 LKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNE 703
Query: 77 DIKSWIKP 84
++ +KP
Sbjct: 704 NVHRSVKP 711
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
Query: 28 LKFMQIFLMFLVVGL--------CFSIIGLYTTKFNAVR-NIMPIAPSIINVRLEDV--S 76
LK+M+ F FL +GL C + +GL A++ NI+P ++ + LE++
Sbjct: 519 LKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNE 578
Query: 77 DIKSWIKP 84
++ +KP
Sbjct: 579 NVHRSVKP 586
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
Query: 28 LKFMQIFLMFLVVGL--------CFSIIGLYTTKFNAVR-NIMPIAPSIINVRLEDV--S 76
LK+M+ F FL +GL C + +GL A++ NI+P ++ + LE++
Sbjct: 644 LKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNE 703
Query: 77 DIKSWIKP 84
++ +KP
Sbjct: 704 NVHRSVKP 711
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,363,496
Number of Sequences: 62578
Number of extensions: 528599
Number of successful extensions: 1198
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1197
Number of HSP's gapped (non-prelim): 5
length of query: 385
length of database: 14,973,337
effective HSP length: 101
effective length of query: 284
effective length of database: 8,652,959
effective search space: 2457440356
effective search space used: 2457440356
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)