BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040146
         (385 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q49WN1|Y1683_STAS1 UPF0637 protein SSP1683 OS=Staphylococcus saprophyticus subsp.
           saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1683
           PE=3 SV=1
          Length = 203

 Score = 35.0 bits (79), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 22/111 (19%)

Query: 13  KDPASTFRTNQR--------PLSLKFMQIFLMFLVVGLC---FSIIGLYTTKFNAVRNIM 61
           KD    F TN R         + L   Q+F+M+ V+         +  +  +F+A+RN+ 
Sbjct: 69  KDTWVAFATNNRGYKMQPHFQIGLFENQLFVMYGVMHEAKDKAQQVQAFVDQFDALRNL- 127

Query: 62  PIAPSIINVRLEDVSDIKSWIKPPTNLLHNMNDTELFWRASFVPRIKKYPF 112
              PS  +V L+ +S  K++I       HNM D +LF     V  +KK  F
Sbjct: 128 ---PSDYSVSLDHMSQEKTYI-------HNMTDEDLFKAFRRVKEVKKGEF 168


>sp|Q08678|AVRV_XANEU Avirulence protein AvrRxv OS=Xanthomonas euvesicatoria GN=avrRxv
           PE=3 SV=1
          Length = 373

 Score = 33.9 bits (76), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 12/147 (8%)

Query: 45  SIIGLYTTKFNAVRNIMPIAPSIINVRLEDVSDIKSWIKPPTNLLHNMNDTELFWRASFV 104
           S++       + +R   PI+ S+   RL D+ ++   ++   N L+N+N         F+
Sbjct: 97  SLVSYANATLDQLRRNEPISESL---RLMDIENLPHLVRSYDNRLNNLNLRSFDTPGQFL 153

Query: 105 PRIKKYPFKRVPKIAFMFLTKGPLPLAPLWEKF---FKGHEGLYS--IYVHPHPAYNGKF 159
             + ++    +P  A + L + P      W +     + HE  ++  I + P  AYN   
Sbjct: 154 HDLSRWHKTGLPLRAVVRLDEDPR----RWHRVAFDVRNHESGHTTIIALEPASAYNPDH 209

Query: 160 SPSSVFYRRQIPSQPAEWGEMSMCEAE 186
            P  V  R  + SQ       ++ EAE
Sbjct: 210 MPGFVKMRENLTSQFGRKISFAVIEAE 236


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.139    0.447 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,248,992
Number of Sequences: 539616
Number of extensions: 6693342
Number of successful extensions: 14201
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 14201
Number of HSP's gapped (non-prelim): 3
length of query: 385
length of database: 191,569,459
effective HSP length: 119
effective length of query: 266
effective length of database: 127,355,155
effective search space: 33876471230
effective search space used: 33876471230
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (28.5 bits)