Query 040146
Match_columns 385
No_of_seqs 256 out of 823
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 05:34:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040146.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040146hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03183 acetylglucosaminyltra 100.0 1.2E-46 2.6E-51 381.7 19.7 244 114-382 76-363 (421)
2 PF02485 Branch: Core-2/I-Bran 100.0 2.9E-47 6.2E-52 360.4 9.1 222 118-345 1-244 (244)
3 KOG0799 Branching enzyme [Carb 99.9 4.9E-27 1.1E-31 241.0 12.6 215 118-336 105-350 (439)
4 TIGR01310 L7 60S ribosomal pro 35.2 1.5E+02 0.0032 28.7 7.2 101 109-226 65-168 (235)
5 PF07172 GRP: Glycine rich pro 23.1 80 0.0017 26.2 2.7 17 33-49 5-21 (95)
6 cd06439 CESA_like_1 CESA_like_ 19.1 6.4E+02 0.014 22.9 8.3 99 112-223 25-132 (251)
7 TIGR02209 ftsL_broad cell divi 16.7 1.5E+02 0.0032 23.1 3.0 23 29-51 2-24 (85)
8 PF11118 DUF2627: Protein of u 15.8 2.1E+02 0.0046 23.0 3.5 31 24-54 34-64 (77)
9 PF04724 Glyco_transf_17: Glyc 15.5 3.9E+02 0.0084 27.4 6.3 28 111-138 74-102 (356)
10 PF11293 DUF3094: Protein of u 13.6 2.8E+02 0.0061 20.8 3.4 23 24-49 26-49 (55)
No 1
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=100.00 E-value=1.2e-46 Score=381.65 Aligned_cols=244 Identities=21% Similarity=0.267 Sum_probs=188.4
Q ss_pred CCCcEEEEEEe-cCC-CChHHHHHHHHhccCCceEEEEeeCCCCCCC---------------CCCCCcccccccC-CCcc
Q 040146 114 RVPKIAFMFLT-KGP-LPLAPLWEKFFKGHEGLYSIYVHPHPAYNGK---------------FSPSSVFYRRQIP-SQPA 175 (385)
Q Consensus 114 ~~~KIAfLiLa-~~p-~~l~rLw~~~~~~~~~~ysIYIHiD~~~~~~---------------~~~~~vF~~r~Ip-s~~V 175 (385)
.+||+||||++ +|+ .+++||+++++++++. ||||+|++.... ...+||++ +. +..|
T Consensus 76 ~~~r~AYLI~~h~~d~~~l~RLL~aLYhprN~---y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~v---l~k~~~V 149 (421)
T PLN03183 76 KLPRFAYLVSGSKGDLEKLWRTLRALYHPRNQ---YVVHLDLESPAEERLELASRVENDPMFSKVGNVYM---ITKANLV 149 (421)
T ss_pred CCCeEEEEEEecCCcHHHHHHHHHHhcCCCce---EEEEecCCCChHHHHHHHHHhhccchhhccCcEEE---Eecceee
Confidence 57999999999 466 8999999999987544 889999865321 02456764 22 3469
Q ss_pred ccCCccHHHHHHHHHHHHHhC-CCCCEEEEecCCcccCcChHHH-HHHHH-hCCCCceEeecCCCCCCCCcccCC-----
Q 040146 176 EWGEMSMCEAERRLLANALLD-VSNEWFILLSESCVPLHNFSIV-YYYIS-KSRYSFMESYDDPGPYGRGRYNGN----- 247 (385)
Q Consensus 176 ~WG~~SlV~Ael~LL~~AL~d-~~n~~fvLLSgsdiPL~s~~~I-~~~L~-~~~~sFIe~~~~~~~~~r~RY~~~----- 247 (385)
.|||+|||+||+++|+.+|+. .+|+|||||||+||||+++++| +.|+. +.+++||++.+..+.....|+...
T Consensus 150 ~WGG~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~pg 229 (421)
T PLN03183 150 TYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPG 229 (421)
T ss_pred ccCChHHHHHHHHHHHHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecCc
Confidence 999999999999999999984 6899999999999999999995 66665 678999998764332222222100
Q ss_pred ---------C--CC--CcC-ccccccccceeeecHHHHHHHHhcccch-hHHHhccCCCCccCchhHHHHhhcc--cccc
Q 040146 248 ---------M--EP--EVT-LSQWRKGSQWFEINRRLAVDIIEDTSYY-PKFRDFCKPGCYVDEHYFPTMLTIH--FSRL 310 (385)
Q Consensus 248 ---------m--~P--~i~-~~~~rkGSQWf~LtR~~a~~Il~d~~~~-~~F~~~c~~~c~pDE~yf~TlL~n~--~~~~ 310 (385)
+ .+ ..+ ..++++|||||+|||++|+||+...+-. ...+.|...+++|||+||||+++|+ ++++
T Consensus 230 l~~~~ks~~~~~~~~R~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~~t~~pdE~fFqTVl~NS~~f~~t 309 (421)
T PLN03183 230 LYSTNKSDIYWVTPRRSLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEFAKT 309 (421)
T ss_pred eeecccchhhhhhhhccCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHhcCCCCchHHHHHHHhhccccccc
Confidence 0 00 111 2478999999999999999999743211 2234444556789999999999998 7889
Q ss_pred ccCCceEEEeCCCCC-CCCccccCCCCCHHHHHHHHcCCCcccCCCCCCCcceEEecCCCCCchhHHHhHHhh
Q 040146 311 LANRTLTWTDWSRGG-AHPATYGGADISEEFFRKITASSQCYYNKQVTSFCYLFGRKFAPSALGPLLELSLSA 382 (385)
Q Consensus 311 i~n~~lryidWs~g~-~hP~~~~~~D~~~~~l~~l~~~~~C~yn~~~~~~~~LFARKF~~~~~~~Ll~~~~~~ 382 (385)
++|+++|||||++++ .||++|+.+|+ ++|.+++ ++|||||+. ++++|+.+|+-
T Consensus 310 ~vn~nLRyI~W~~~~~~~P~~l~~~D~-----~~l~~S~------------~lFARKFd~--d~~vl~~Id~~ 363 (421)
T PLN03183 310 AVNHDLHYISWDNPPKQHPHTLSLNDT-----EKMIASG------------AAFARKFRR--DDPVLDKIDKE 363 (421)
T ss_pred ccCCceeEEecCCCCCCCCcccCHHHH-----HHHHhCC------------CccccCCCC--ChHHHHHHHHH
Confidence 999999999999765 49999999998 7788775 799999996 47899988763
No 2
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=100.00 E-value=2.9e-47 Score=360.36 Aligned_cols=222 Identities=32% Similarity=0.569 Sum_probs=150.2
Q ss_pred EEEEEEe-c-CCCChHHHHHHHHhccCCceEEEEeeCCCCCC----C-----CCCCCcccccccC-CCccccCCccHHHH
Q 040146 118 IAFMFLT-K-GPLPLAPLWEKFFKGHEGLYSIYVHPHPAYNG----K-----FSPSSVFYRRQIP-SQPAEWGEMSMCEA 185 (385)
Q Consensus 118 IAfLiLa-~-~p~~l~rLw~~~~~~~~~~ysIYIHiD~~~~~----~-----~~~~~vF~~r~Ip-s~~V~WG~~SlV~A 185 (385)
|||||++ + ++.++++|++.++++. +. +|||+|++... . ...++|+. ++ +.+|.||++|+|+|
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~~~~-~~--f~iHiD~k~~~~~~~~~~~~~~~~~nv~~---v~~r~~v~WG~~S~v~A 74 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLYHPD-ND--FYIHIDKKSPDYFYEEIKKLISCFPNVHF---VPKRVDVRWGGFSLVEA 74 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH--TT-SE--EEEEE-TTS-HHHHHHHHHHHCT-TTEEE----SS-----TTSHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhcCCC-CE--EEEEEcCCCChHHHHHHHHhcccCCceee---cccccccccCCccHHHH
Confidence 7999999 6 6678888888888643 43 67999986321 0 13456644 55 67999999999999
Q ss_pred HHHHHHHHHh-CCCCCEEEEecCCcccCcChHHHHHHHHhC--CCCceEeecCCCCCCCCcccCC----CCCCcCccccc
Q 040146 186 ERRLLANALL-DVSNEWFILLSESCVPLHNFSIVYYYISKS--RYSFMESYDDPGPYGRGRYNGN----MEPEVTLSQWR 258 (385)
Q Consensus 186 el~LL~~AL~-d~~n~~fvLLSgsdiPL~s~~~I~~~L~~~--~~sFIe~~~~~~~~~r~RY~~~----m~P~i~~~~~r 258 (385)
+++||+.|++ +++|+|||||||+|+||+++++|+++|+.. +.+|+++...++....+||... +.+.++..+|+
T Consensus 75 ~l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 154 (244)
T PF02485_consen 75 TLNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPFFRKRTLY 154 (244)
T ss_dssp HHHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEEEEEE--E
T ss_pred HHHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeeccccccccccc
Confidence 9999999999 789999999999999999999999999865 5679999887654433666543 34444446899
Q ss_pred cccceeeecHHHHHHHHhcccchhHHHhccCCCCccCchhHHHHhhcc--ccccccCCceEEEeCC-CCCCCCccccCCC
Q 040146 259 KGSQWFEINRRLAVDIIEDTSYYPKFRDFCKPGCYVDEHYFPTMLTIH--FSRLLANRTLTWTDWS-RGGAHPATYGGAD 335 (385)
Q Consensus 259 kGSQWf~LtR~~a~~Il~d~~~~~~F~~~c~~~c~pDE~yf~TlL~n~--~~~~i~n~~lryidWs-~g~~hP~~~~~~D 335 (385)
+|||||+|||++|++|++|....+.++.+|+.+|+|||+||||+|.|+ +++++.|+++|||||+ ++++||++++..|
T Consensus 155 ~GSqW~~Ltr~~v~~il~~~~~~~~~~~~~~~~~~pDE~ffqTll~n~~~~~~~~~~~~~r~i~W~~~~~~~p~~~~~~~ 234 (244)
T PF02485_consen 155 KGSQWFSLTRDFVEYILDDPNYRPKLKKYFRFSLCPDESFFQTLLNNSGHFKDTIVNRNLRYIDWSRRGGCHPKTLTICD 234 (244)
T ss_dssp EE-S--EEEHHHHHHHHH-HHHHHHHHHHT-TSSSGGGTHHHHH--SSGGG-B-TTTSSSEEE-BTGT-SS---SSEEEE
T ss_pred ccceeeEeeHHHHHHhhhhHHHHHHHHHhhcCccCcchhhHHHhhcccchhcccccCCCEEEEECCCCCCCCCCeeeeee
Confidence 999999999999999999999989999999889999999999999998 6889999999999999 8899999999999
Q ss_pred CCHHHHHHHH
Q 040146 336 ISEEFFRKIT 345 (385)
Q Consensus 336 ~~~~~l~~l~ 345 (385)
++.+.|+.|+
T Consensus 235 ~~~~d~~~~~ 244 (244)
T PF02485_consen 235 LGPEDLPWLK 244 (244)
T ss_dssp --GGGHHHH-
T ss_pred eCHHHHHhhC
Confidence 9988887764
No 3
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=99.94 E-value=4.9e-27 Score=241.03 Aligned_cols=215 Identities=20% Similarity=0.228 Sum_probs=161.0
Q ss_pred EEEEEEe-cCCCChHHHHHHHHhccCCceEEEEeeCCCCCCCC-----CCCCcccccccC--CCccccCCccHHHHHHHH
Q 040146 118 IAFMFLT-KGPLPLAPLWEKFFKGHEGLYSIYVHPHPAYNGKF-----SPSSVFYRRQIP--SQPAEWGEMSMCEAERRL 189 (385)
Q Consensus 118 IAfLiLa-~~p~~l~rLw~~~~~~~~~~ysIYIHiD~~~~~~~-----~~~~vF~~r~Ip--s~~V~WG~~SlV~Ael~L 189 (385)
+||+.++ ++-+++++++.+.++++ +.| +||+|.+....+ +..++|.|.+|. +..|.|||.|++.|.++|
T Consensus 105 ~a~~~~v~kd~~~verll~aiYhPq-N~y--cihvD~~s~~~fk~~~~~L~~cf~NV~v~~k~~~v~~~G~s~l~a~l~c 181 (439)
T KOG0799|consen 105 AAFLRVVYKDYEQVERLLQAIYHPQ-NVY--CIHVDAKSPPEFRVAMQQLASCFPNVIVLPKRESVTYGGHSILAAHLNC 181 (439)
T ss_pred eEEEEeecccHHHHHHHHHHHhCCc-Ccc--eEEECCCCCHHHHHHHHHHHhcCCceEEeccccceecCCchhhHHHHHH
Confidence 4555555 66689999999999975 444 499998654321 234555554443 458999999999999999
Q ss_pred HHHHHhCC-CCCEEEEecCCcccCcChHHHHHHHHh-CCCCceEeecCCCCCC-CCcc-------cC-C----CCCCcC-
Q 040146 190 LANALLDV-SNEWFILLSESCVPLHNFSIVYYYISK-SRYSFMESYDDPGPYG-RGRY-------NG-N----MEPEVT- 253 (385)
Q Consensus 190 L~~AL~d~-~n~~fvLLSgsdiPL~s~~~I~~~L~~-~~~sFIe~~~~~~~~~-r~RY-------~~-~----m~P~i~- 253 (385)
|+.+++.. +|+||++|||+|+||+|+.++.+.|+. +|.+||+.....+... +..+ .+ . +.+.++
T Consensus 182 ~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L~g~N~i~~~~~~~~~~~~~~k~~~~~~~~~~~~s~~~~~~lp~ 261 (439)
T KOG0799|consen 182 LADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKILRGANFVEHTSEIGWKLNRKAKWDIIDLKYFRNKSPLPWVILPT 261 (439)
T ss_pred HHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHcCCcccccCcccccHHHhcccCCcccccchheecCCCccccCCC
Confidence 99999964 699999999999999999999999985 8899999876544211 1111 00 0 111122
Q ss_pred ccccccccceeeecHHHHHHHHhcccchhHHHhccCCCCccCchhHHHHhhccccccccCCc--eEEEeCCCC-----CC
Q 040146 254 LSQWRKGSQWFEINRRLAVDIIEDTSYYPKFRDFCKPGCYVDEHYFPTMLTIHFSRLLANRT--LTWTDWSRG-----GA 326 (385)
Q Consensus 254 ~~~~rkGSQWf~LtR~~a~~Il~d~~~~~~F~~~c~~~c~pDE~yf~TlL~n~~~~~i~n~~--lryidWs~g-----~~ 326 (385)
..++++||.|++|+|++|+|++.+. ....+.++.+.+..|||+||+|+++|.++..-.+.+ +|++.|..+ +.
T Consensus 262 ~~ki~~Gs~~~~LsR~fv~y~i~~~-~~~~ll~~~~~t~~~dE~f~~Tl~~n~~~~~g~~~~~~lr~~~W~~~~~~~~~~ 340 (439)
T KOG0799|consen 262 ALKLFKGSAWVSLSRAFVEYLISGN-LPRTLLMYYNNTYSPDEGFFHTLQCNPFGMPGVFNDECLRYTNWDRKDVDPPKQ 340 (439)
T ss_pred ceEEEecceeEEEeHHHHHHHhcCc-cHHHHHHHHhCccCcchhhhHhhhccccCCCCcccchhhcceeccccccccccc
Confidence 2467999999999999999999984 445777788889999999999999999555555666 999999862 34
Q ss_pred CCccccCCCC
Q 040146 327 HPATYGGADI 336 (385)
Q Consensus 327 hP~~~~~~D~ 336 (385)
||+.++..|+
T Consensus 341 ~c~~~~~~~~ 350 (439)
T KOG0799|consen 341 HCHSLTVRDF 350 (439)
T ss_pred CCcccccccc
Confidence 7777776654
No 4
>TIGR01310 L7 60S ribosomal protein L7, eukaryotic. Members of this family average ~ 250 residues in length, somewhat longer than the archaeal L30P/L7E homolog (~ 155 residues) and much longer than the related bacterial/organellar form (~ 60 residues).
Probab=35.23 E-value=1.5e+02 Score=28.73 Aligned_cols=101 Identities=16% Similarity=0.204 Sum_probs=58.2
Q ss_pred CCCCCCCCcEEEEEEecCCCChHHHHHHHHhc---cCCceEEEEeeCCCCCCCCCCCCcccccccCCCccccCCccHHHH
Q 040146 109 KYPFKRVPKIAFMFLTKGPLPLAPLWEKFFKG---HEGLYSIYVHPHPAYNGKFSPSSVFYRRQIPSQPAEWGEMSMCEA 185 (385)
Q Consensus 109 ~~p~~~~~KIAfLiLa~~p~~l~rLw~~~~~~---~~~~ysIYIHiD~~~~~~~~~~~vF~~r~Ips~~V~WG~~SlV~A 185 (385)
.++.+..+|++|+|=.+|...+.+=.++..+- ++-...++|-..+++...+.. | .--|.||..|+
T Consensus 65 ~~~~~~e~kl~fVIRirG~~~v~p~v~k~L~lLRL~~in~~Vfvk~~~~~~~ML~~--------V-epYVt~G~p~l--- 132 (235)
T TIGR01310 65 KFYVPAEHKLLFVIRIKGINGIPPKPRKVLRLLRLKQVHNGVFVKVNKATLQMLRI--------V-EPYVAYGYPNL--- 132 (235)
T ss_pred CcCCCCCCeEEEEEEeCCCCCCCHHHHHHHHHhCCCccceEEEEECCHHHHHHHHh--------c-CCeEEEecCCH---
Confidence 45566788999999997765454444444431 122223666655543221111 1 12378999985
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCcccCcChHHHHHHHHhCC
Q 040146 186 ERRLLANALLDVSNEWFILLSESCVPLHNFSIVYYYISKSR 226 (385)
Q Consensus 186 el~LL~~AL~d~~n~~fvLLSgsdiPL~s~~~I~~~L~~~~ 226 (385)
..++.++.... +.-+.|+-+||-++.-+.+.|-+.|
T Consensus 133 --~tvr~Li~KRG---~~k~~~~~v~Ltdn~iiE~~lg~~g 168 (235)
T TIGR01310 133 --KSVRELIYKRG---FAKINGQRVPLTDNTIIEQHLGKYG 168 (235)
T ss_pred --HHHHHHHHHhC---ceeeCCCeeeCChhHHHHHhhccCC
Confidence 33444444322 3457788888888888877775443
No 5
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=23.08 E-value=80 Score=26.16 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHhhh
Q 040146 33 IFLMFLVVGLCFSIIGL 49 (385)
Q Consensus 33 ~~~~~~~~~~~~~~~~~ 49 (385)
.|||+.++++++.+|++
T Consensus 5 ~~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 5 AFLLLGLLLAALLLISS 21 (95)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444444444444443
No 6
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=19.07 E-value=6.4e+02 Score=22.85 Aligned_cols=99 Identities=13% Similarity=0.100 Sum_probs=56.7
Q ss_pred CCCCCcEEEEEEe-cCCCChHHHHHHHHhccC--CceEEEEeeCCCCCCCC------CCCCcccccccCCCccccCCccH
Q 040146 112 FKRVPKIAFMFLT-KGPLPLAPLWEKFFKGHE--GLYSIYVHPHPAYNGKF------SPSSVFYRRQIPSQPAEWGEMSM 182 (385)
Q Consensus 112 ~~~~~KIAfLiLa-~~p~~l~rLw~~~~~~~~--~~ysIYIHiD~~~~~~~------~~~~vF~~r~Ips~~V~WG~~Sl 182 (385)
.+..|+++.++.+ +....+++.++.+.+... ..+.|.|..|.+..... ...++.+ +.. ... .+.
T Consensus 25 ~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~v~~---i~~--~~~--~g~ 97 (251)
T cd06439 25 PAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADKGVKL---LRF--PER--RGK 97 (251)
T ss_pred CCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhCcEEE---EEc--CCC--CCh
Confidence 4557899999999 455677888888775321 22678888876432211 1112211 111 111 234
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEecCCcccCcChHHHHHHHH
Q 040146 183 CEAERRLLANALLDVSNEWFILLSESCVPLHNFSIVYYYIS 223 (385)
Q Consensus 183 V~Ael~LL~~AL~d~~n~~fvLLSgsdiPL~s~~~I~~~L~ 223 (385)
..|-..+++.| ..||++++-+.|+|- .+.+.+.+.
T Consensus 98 ~~a~n~gi~~a----~~d~i~~lD~D~~~~--~~~l~~l~~ 132 (251)
T cd06439 98 AAALNRALALA----TGEIVVFTDANALLD--PDALRLLVR 132 (251)
T ss_pred HHHHHHHHHHc----CCCEEEEEccccCcC--HHHHHHHHH
Confidence 55544555443 348999998888885 455555543
No 7
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=16.66 E-value=1.5e+02 Score=23.10 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 040146 29 KFMQIFLMFLVVGLCFSIIGLYT 51 (385)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~ 51 (385)
+++.++++.++++++++++....
T Consensus 2 ~~l~~~l~~~v~~~~~~~v~~~~ 24 (85)
T TIGR02209 2 KKLYVLLLLAILVSAISVVSAQH 24 (85)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777666543
No 8
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=15.75 E-value=2.1e+02 Score=22.97 Aligned_cols=31 Identities=13% Similarity=0.264 Sum_probs=26.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhhhcccc
Q 040146 24 RPLSLKFMQIFLMFLVVGLCFSIIGLYTTKF 54 (385)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (385)
.++|.-.+|+++.++..+++++.++.+++-+
T Consensus 34 ~p~~~lwlqfl~G~~lf~~G~~Fi~GfI~~R 64 (77)
T PF11118_consen 34 SPFPSLWLQFLAGLLLFAIGVGFIAGFILHR 64 (77)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhHhhee
Confidence 5788889999999999999999999888643
No 9
>PF04724 Glyco_transf_17: Glycosyltransferase family 17; InterPro: IPR006813 This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (2.4.1.144 from EC). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression [, ].; GO: 0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0016020 membrane
Probab=15.49 E-value=3.9e+02 Score=27.35 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=18.3
Q ss_pred CCCCCCcEEEEEEecCC-CChHHHHHHHH
Q 040146 111 PFKRVPKIAFMFLTKGP-LPLAPLWEKFF 138 (385)
Q Consensus 111 p~~~~~KIAfLiLa~~p-~~l~rLw~~~~ 138 (385)
|.+.+.||-.+|+..+. +.|+--|+.++
T Consensus 74 ~R~~pRrV~D~~~f~~ElDlLeiRl~eL~ 102 (356)
T PF04724_consen 74 PRKTPRRVYDCFLFNNELDLLEIRLNELY 102 (356)
T ss_pred cCCCCCeEEEEEEeCChHHHHHHHHHHhh
Confidence 44567899999999554 35554455554
No 10
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=13.58 E-value=2.8e+02 Score=20.80 Aligned_cols=23 Identities=13% Similarity=0.569 Sum_probs=12.0
Q ss_pred ccc-hhHHHHHHHHHHHHHHHHHHhhh
Q 040146 24 RPL-SLKFMQIFLMFLVVGLCFSIIGL 49 (385)
Q Consensus 24 ~~~-~~~~~~~~~~~~~~~~~~~~~~~ 49 (385)
++| |++|+ +++++..+++++++-
T Consensus 26 ~PFrP~~Ll---~~li~Vv~gl~llS~ 49 (55)
T PF11293_consen 26 KPFRPWRLL---IVLIVVVIGLGLLSR 49 (55)
T ss_pred CCcchHHHH---HHHHHHHHHHHHHHH
Confidence 566 65554 334455555555543
Done!