Query 040146
Match_columns 385
No_of_seqs 256 out of 823
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 08:30:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040146.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040146hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gak_A Beta-1,6-N-acetylglucos 100.0 2.2E-53 7.6E-58 429.0 14.0 270 91-383 50-381 (391)
2 2fy7_A Beta-1,4-galactosyltran 48.0 1.7E+02 0.0059 27.1 11.8 124 68-215 16-146 (287)
3 1iio_A Conserved hypothetical 9.7 82 0.0028 24.5 0.6 20 204-223 60-79 (84)
4 3u5c_d S36, YS29, 40S ribosoma 7.7 3.8E+02 0.013 19.1 3.4 44 326-385 9-52 (56)
5 3bcv_A Putative glycosyltransf 6.5 9.3E+02 0.032 19.9 6.3 105 114-230 3-117 (240)
6 4a17_V RPL7, 60S ribosomal pro 6.0 5E+02 0.017 23.8 4.2 97 110-223 72-171 (239)
7 2fr5_A Cytidine deaminase; tet 5.5 3.1E+02 0.011 23.1 2.4 101 84-224 5-108 (146)
8 2z86_A Chondroitin synthase; G 5.5 1.1E+03 0.039 23.3 7.1 86 115-212 374-468 (625)
9 2el8_A Signal-transducing adap 5.4 5.1E+02 0.017 20.4 3.6 37 169-208 17-53 (118)
10 3kp1_E D-ornithine aminomutase 5.4 2.5E+02 0.0085 23.3 1.6 11 91-101 16-26 (121)
No 1
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*
Probab=100.00 E-value=2.2e-53 Score=428.96 Aligned_cols=270 Identities=14% Similarity=0.170 Sum_probs=211.8
Q ss_pred CCChHHHHHHHhcCCccc---CC---CCCC---CCcEEEEEEe-cCCCChHHHHHHHHhccCCceEEEEeeCCCCCCC--
Q 040146 91 NMNDTELFWRASFVPRIK---KY---PFKR---VPKIAFMFLT-KGPLPLAPLWEKFFKGHEGLYSIYVHPHPAYNGK-- 158 (385)
Q Consensus 91 ~~~d~el~~~as~~~~~~---~~---p~~~---~~KIAfLiLa-~~p~~l~rLw~~~~~~~~~~ysIYIHiD~~~~~~-- 158 (385)
.++|++++.....|+.+. .| |.+. ++||||||++ ++..++++|++.++++ .+.||||+|++....
T Consensus 50 ~~~~~~~~~~~~~C~~~~~~~~~~~~pl~~~e~~~kiAflil~h~d~~~l~rll~~ly~p---~n~y~IHvD~ks~~~~~ 126 (391)
T 2gak_A 50 RWTPHDYINMTRDCASFIRTRKYIVEPLTKEEVGFPIAYSIVVHHKIEMLDRLLRAIYMP---QNFYCIHVDRKAEESFL 126 (391)
T ss_dssp CCCHHHHHHHTTSHHHHHHHHTCCCSCSCHHHHTSCEEEEEEECSCHHHHHHHHHHHCCT---TSEEEEEECTTSCHHHH
T ss_pred ccCcchhccccCCchhhhhcccccCCCCCccccCCCEEEEEEecCCHHHHHHHHHHHhCC---CCeEEEEEeCCCCHHHH
Confidence 678888888876777632 34 4332 5899999999 5556788888888764 344889999875321
Q ss_pred --CC-CCCccccccc--CCCccccCCccHHHHHHHHHHHHHhC-CCCCEEEEecCCcccCcChHHHHHHHHh-CCCCceE
Q 040146 159 --FS-PSSVFYRRQI--PSQPAEWGEMSMCEAERRLLANALLD-VSNEWFILLSESCVPLHNFSIVYYYISK-SRYSFME 231 (385)
Q Consensus 159 --~~-~~~vF~~r~I--ps~~V~WG~~SlV~Ael~LL~~AL~d-~~n~~fvLLSgsdiPL~s~~~I~~~L~~-~~~sFIe 231 (385)
+. ..++|.|++| ++..|.|||+|||+||++||++||++ .+|+|||||||+|+||+|+++|++||+. .++|||+
T Consensus 127 ~~~~~~~~~f~NV~v~~~~~~v~WGg~S~v~A~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~~~~nFIe 206 (391)
T 2gak_A 127 AAVQGIASCFDNVFVASQLESVVYASWTRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGENNLE 206 (391)
T ss_dssp HHHHHHHHTCTTEEECSSCCCCCTTSHHHHHHHHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHTTTCCBCC
T ss_pred HHHHHHHhcCCCEEEeccCcccccCCchHHHHHHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhcCCCceee
Confidence 11 2233445444 36799999999999999999999996 4899999999999999999999999984 7999999
Q ss_pred eecCCCCC-CCCcccC--------------CCCCCcCccccccccceeeecHHHHHHHHhcccchhHHHhccCCCCccCc
Q 040146 232 SYDDPGPY-GRGRYNG--------------NMEPEVTLSQWRKGSQWFEINRRLAVDIIEDTSYYPKFRDFCKPGCYVDE 296 (385)
Q Consensus 232 ~~~~~~~~-~r~RY~~--------------~m~P~i~~~~~rkGSQWf~LtR~~a~~Il~d~~~~~~F~~~c~~~c~pDE 296 (385)
+.++++.. .|.+|.+ ++.|. ..+|++|||||+|||++|++|++|.. .++|.+||+++|+|||
T Consensus 207 ~~~~~~~~~~R~~~~~~~~~~~l~~~~~~k~~~P~--~~~~~~GSqW~~LtR~~v~~vl~d~~-~~~~~~~~k~t~~pDE 283 (391)
T 2gak_A 207 TEKMPPNKEERWKKRYAVVDGKLTNTGIVKAPPPL--KTPLFSGSAYFVVTREYVGYVLENEN-IQKLMEWAQDTYSPDE 283 (391)
T ss_dssp BEECCGGGSHHHHEEEEEETTEEEEEEEECCCCSC--SSCCEECCSCCEEEHHHHHHHHHCHH-HHHHHHHHTTSSSGGG
T ss_pred ccCCCcccccceEeeeeccccceeeecccccCCcc--ccceecccceeEecHHHHHHHHhCCc-HHHHHHHHcCCcCCch
Confidence 99876532 2222221 13343 25899999999999999999999865 6799999999999999
Q ss_pred hhHHHHhhcc-ccccc----------cCCceEEEeCC-------CCCCCCc----------cccCCCCCHHHHHHHHcCC
Q 040146 297 HYFPTMLTIH-FSRLL----------ANRTLTWTDWS-------RGGAHPA----------TYGGADISEEFFRKITASS 348 (385)
Q Consensus 297 ~yf~TlL~n~-~~~~i----------~n~~lryidWs-------~g~~hP~----------~~~~~D~~~~~l~~l~~~~ 348 (385)
|||||++.+. .++.+ +|+++|||+|+ +|++||. +|+.+|+ +.|+++
T Consensus 284 ~ffqTll~~~~~pg~~~~~~~~~~~~~~~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~~~~~Dl-----~~l~~s- 357 (391)
T 2gak_A 284 FLWATIQRIPEVPGSFPSSNKYDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDL-----SWMLRQ- 357 (391)
T ss_dssp THHHHHTTSTTSTTCCCSSGGGCBCTTTSSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEECCGGGH-----HHHTTS-
T ss_pred hHHHHHhhccCCCCccccccccccccccCceEEEEecccCCccccCCCCCCCccceecceeeecHHHH-----HHHHhC-
Confidence 9999999987 44432 47899999997 3556887 7887776 778765
Q ss_pred CcccCCCCCCCcceEEecCCCCCchhHHHhHHhhh
Q 040146 349 QCYYNKQVTSFCYLFGRKFAPSALGPLLELSLSAF 383 (385)
Q Consensus 349 ~C~yn~~~~~~~~LFARKF~~~~~~~Ll~~~~~~~ 383 (385)
++||||||++++++++++.+++.+
T Consensus 358 -----------~~lFARKF~~~~d~~~l~~l~~~l 381 (391)
T 2gak_A 358 -----------HHLFANKFDMDVDPFAIQCLDEHL 381 (391)
T ss_dssp -----------CCSEEECCCTTTCHHHHHHHHHHH
T ss_pred -----------CCceEEccCCccCHHHHHHHHHHH
Confidence 589999999999999999998754
No 2
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=48.01 E-value=1.7e+02 Score=27.08 Aligned_cols=124 Identities=12% Similarity=0.034 Sum_probs=70.4
Q ss_pred cccccccccccccccCCCCCCCCCCChHHHHHHHhcC-CcccCCCC--CCCCcEEEEEEe-cCCCChHHHHHHHH---hc
Q 040146 68 INVRLEDVSDIKSWIKPPTNLLHNMNDTELFWRASFV-PRIKKYPF--KRVPKIAFMFLT-KGPLPLAPLWEKFF---KG 140 (385)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~el~~~as~~-~~~~~~p~--~~~~KIAfLiLa-~~p~~l~rLw~~~~---~~ 140 (385)
...|......|..-+.. ....+++-||+....... +.-.-.|. ...++|+.+|-+ +....|++.++.+. +.
T Consensus 16 ~~~c~~~~~~l~g~~~~--~~~~~~~~~~~~~~~~~~~~gg~~~p~~c~~~~~VSIIIP~yN~~~~L~~~L~sl~~~l~q 93 (287)
T 2fy7_A 16 LPACPEESPLLVGPMLI--EFNMPVDLELVAKQNPNVKMGGRYAPRDCVSPHKVAIIIPFRNRQEHLKYWLYYLHPVLQR 93 (287)
T ss_dssp CCBCCSSCTTCCCBCCC--CCCSCCCHHHHHHHCTTCBTTTEECCSSSBCSCEEEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCCCcCCcCccee--cccCCCCHHHHHhhCCCcccCCcCcCCCCCcCCcEEEEEeeCCCHHHHHHHHHHHHHHHHH
Confidence 56676544444432221 122366788887643322 11111121 225799999999 55678888888887 33
Q ss_pred cCCceEEEEeeCCCCCCCCCCCCcccccccCCCccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCcccCcCh
Q 040146 141 HEGLYSIYVHPHPAYNGKFSPSSVFYRRQIPSQPAEWGEMSMCEAERRLLANALLDVSNEWFILLSESCVPLHNF 215 (385)
Q Consensus 141 ~~~~ysIYIHiD~~~~~~~~~~~vF~~r~Ips~~V~WG~~SlV~Ael~LL~~AL~d~~n~~fvLLSgsdiPL~s~ 215 (385)
....|.|+|--|. - + ++++...|--..+..|++....+|++++-+.|+|..+.
T Consensus 94 ~~~~~EIiVVdds-~------d---------------~~f~~a~a~N~G~~~al~~A~gd~i~flD~D~i~~~d~ 146 (287)
T 2fy7_A 94 QQLDYGIYVINQA-G------D---------------TIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDH 146 (287)
T ss_dssp TTCEEEEEEEEEC-S------S---------------SCCCHHHHHHHHHHHHHHHSCCCEEEEECTTEEESBTT
T ss_pred hcCCceEEEEEeC-C------C---------------CccchhhhhhhHHHHHHHhCCCCEEEEECCCcccCCCc
Confidence 3455666643331 0 0 11223333333444555656789999999999998874
No 3
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=9.65 E-value=82 Score=24.55 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=17.2
Q ss_pred EecCCcccCcChHHHHHHHH
Q 040146 204 LLSESCVPLHNFSIVYYYIS 223 (385)
Q Consensus 204 LLSgsdiPL~s~~~I~~~L~ 223 (385)
+|..+|+|+++.+++.+-+.
T Consensus 60 ll~~~DFP~ksA~~lAd~iv 79 (84)
T 1iio_A 60 VLTADDFPFKSAEEVADTIV 79 (84)
T ss_dssp GSCGGGSBCSHHHHHHHHHH
T ss_pred hCCcccCCCCCHHHHHHHHH
Confidence 47789999999999988775
No 4
>3u5c_d S36, YS29, 40S ribosomal protein S29-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_N 3o30_S 3o2z_S 3u5g_d 3jyv_N* 1s1h_N
Probab=7.72 E-value=3.8e+02 Score=19.12 Aligned_cols=44 Identities=25% Similarity=0.376 Sum_probs=30.5
Q ss_pred CCCccccCCCCCHHHHHHHHcCCCcccCCCCCCCcceEEecCCCCCchhHHHhHHhhhCC
Q 040146 326 AHPATYGGADISEEFFRKITASSQCYYNKQVTSFCYLFGRKFAPSALGPLLELSLSAFGF 385 (385)
Q Consensus 326 ~hP~~~~~~D~~~~~l~~l~~~~~C~yn~~~~~~~~LFARKF~~~~~~~Ll~~~~~~~~~ 385 (385)
.||+.|+.. +..|..-|.+ .=.-|||.......-+.....-+||
T Consensus 9 shpr~~G~g------------s~rC~vcGr~----~g~iRkfGl~lcR~cfRe~A~~iGF 52 (56)
T 3u5c_d 9 SHPRRYGKG------------SRQCRVCSSH----TGLIRKYGLNICRQCFREKANDIGF 52 (56)
T ss_dssp CCCCSSSGG------------GCCCTTTCCC----SSEECGGGCCEEHHHHHHHHHHHTC
T ss_pred cCCcccCCC------------cceeecCCCC----cccccccCcchhHHHHHHHHHhcCc
Confidence 589999853 3456555533 4578999987777777777666776
No 5
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=6.48 E-value=9.3e+02 Score=19.94 Aligned_cols=105 Identities=10% Similarity=0.032 Sum_probs=57.7
Q ss_pred CCCcEEEEEEe-cCCCChHHHHHHHHhccCCceEEEEeeCCCCCCCC--------CCCCcccccccCCCccccCCccHHH
Q 040146 114 RVPKIAFMFLT-KGPLPLAPLWEKFFKGHEGLYSIYVHPHPAYNGKF--------SPSSVFYRRQIPSQPAEWGEMSMCE 184 (385)
Q Consensus 114 ~~~KIAfLiLa-~~p~~l~rLw~~~~~~~~~~ysIYIHiD~~~~~~~--------~~~~vF~~r~Ips~~V~WG~~SlV~ 184 (385)
..|+|..+|.+ +.+..+++.++.+.......+.|.|--|.+-.... ..+++-+ +.. ...+...
T Consensus 3 ~~p~vsViIp~yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~~i~~---i~~-----~n~G~~~ 74 (240)
T 3bcv_A 3 LIPKVSVIVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKV---IHK-----KNAGLGM 74 (240)
T ss_dssp CCCSEEEEEEESSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCSSEEE---EEC-----CCCCHHH
T ss_pred CCCcEEEEEecCCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhCCCEEE---EEC-----CCCChHH
Confidence 45789999999 66788999999998644445667665453321100 1122211 211 1223445
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCcccCcC-hHHHHHHHHhCCCCce
Q 040146 185 AERRLLANALLDVSNEWFILLSESCVPLHN-FSIVYYYISKSRYSFM 230 (385)
Q Consensus 185 Ael~LL~~AL~d~~n~~fvLLSgsdiPL~s-~~~I~~~L~~~~~sFI 230 (385)
|--.+++.| .-+|+++|-..|++-.+ .+.+.+.+...+...+
T Consensus 75 a~N~g~~~a----~g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v 117 (240)
T 3bcv_A 75 ACNSGLDVA----TGEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAV 117 (240)
T ss_dssp HHHHHHHHC----CSSEEEECCTTCCCCTTHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHc----CCCEEEEECCCCcCCHHHHHHHHHHHHhcCCCEE
Confidence 554555444 45888888888876433 2334444443333433
No 6
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_V 4a1c_V 4a1e_V
Probab=5.99 E-value=5e+02 Score=23.80 Aligned_cols=97 Identities=14% Similarity=0.212 Sum_probs=51.1
Q ss_pred CCCCCCCcEEEEEEecCCCChHHHHHHHHhc--cCCceE-EEEeeCCCCCCCCCCCCcccccccCCCccccCCccHHHHH
Q 040146 110 YPFKRVPKIAFMFLTKGPLPLAPLWEKFFKG--HEGLYS-IYVHPHPAYNGKFSPSSVFYRRQIPSQPAEWGEMSMCEAE 186 (385)
Q Consensus 110 ~p~~~~~KIAfLiLa~~p~~l~rLw~~~~~~--~~~~ys-IYIHiD~~~~~~~~~~~vF~~r~Ips~~V~WG~~SlV~Ae 186 (385)
+-....+|+||++.++|.....+-..+..+. -...++ +++-..|..... + +.| +.-|.||..++
T Consensus 72 ~~~~~e~kl~fVirIRg~ig~~~~~rktL~~LgL~ki~~~Vfvk~npa~~gM-----L---r~V-~pyV~~G~pnl---- 138 (239)
T 4a17_V 72 FYVPAEAKVAFAIRIRGVNQLHPDVKRVLRLFRLRQLHNGAFFRVNKASLNM-----I---KRV-LPFITFGYPTR---- 138 (239)
T ss_dssp EEECCCCCEEEEEECSCSSSCCHHHHHHHHHTTCCBTTEEEEEECCHHHHHT-----T---GGG-GGGEEEECCCH----
T ss_pred CCCCCCceEEEEEEecccCCCCHHHHHHHHHcCCCccCCeEEEeCCHHHHHH-----H---HHh-hhceeeecCCH----
Confidence 3345679999999998776555555444431 111122 333222211100 0 011 22489999985
Q ss_pred HHHHHHHHhCCCCCEEEEecCCcccCcChHHHHHHHH
Q 040146 187 RRLLANALLDVSNEWFILLSESCVPLHNFSIVYYYIS 223 (385)
Q Consensus 187 l~LL~~AL~d~~n~~fvLLSgsdiPL~s~~~I~~~L~ 223 (385)
..+++++.... +..+.++.+||-++.-|.+.|-
T Consensus 139 -ksv~eLi~KRG---~~k~~~~~i~Ltdn~~ie~~lG 171 (239)
T 4a17_V 139 -NTISKLIYKRG---FAKVNGQRIPLTDNTIVEKSLG 171 (239)
T ss_dssp -HHHHHHHHHSC---EEEETTEEEECCCSHHHHHHHG
T ss_pred -HHHHHHHHhhC---ccccCCceecCChhHHHHHhCC
Confidence 34455454222 3334566677777777766664
No 7
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=5.54 E-value=3.1e+02 Score=23.05 Aligned_cols=101 Identities=13% Similarity=0.099 Sum_probs=54.1
Q ss_pred CCCCCCCCCChHHHHHHHhcCCcccCCCCCCCCcEEEEEEecCCCChHHHHHHHHhccCCceEEEEeeCCCCCCCCCCCC
Q 040146 84 PPTNLLHNMNDTELFWRASFVPRIKKYPFKRVPKIAFMFLTKGPLPLAPLWEKFFKGHEGLYSIYVHPHPAYNGKFSPSS 163 (385)
Q Consensus 84 ~~~~~~~~~~d~el~~~as~~~~~~~~p~~~~~KIAfLiLa~~p~~l~rLw~~~~~~~~~~ysIYIHiD~~~~~~~~~~~ 163 (385)
+|+-.+.++++++|+.+|.-.-...--|++ ..+++=.+++++ |. ||.=.. .+
T Consensus 5 ~~~~~~~~~~~~~L~~~A~~a~~~ayapys-~f~VGAal~~~d----------------G~--i~~G~N--vE------- 56 (146)
T 2fr5_A 5 RPSCAVEPEHVQRLLLSSREAKKSAYCPYS-RFPVGAALLTGD----------------GR--IFSGCN--IE------- 56 (146)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCBCTTT-CCCEEEEEEETT----------------SC--EEEEEC--BC-------
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhcCCCcC-CCCEEEEEEeCC----------------Cc--EEEEEe--cc-------
Confidence 455567788888999998554322323665 456777777632 11 332111 00
Q ss_pred cccccccCCCccccCCccHHHHHHHHHHHHHhCCC--CCEEEEecCCccc-CcChHHHHHHHHh
Q 040146 164 VFYRRQIPSQPAEWGEMSMCEAERRLLANALLDVS--NEWFILLSESCVP-LHNFSIVYYYISK 224 (385)
Q Consensus 164 vF~~r~Ips~~V~WG~~SlV~Ael~LL~~AL~d~~--n~~fvLLSgsdiP-L~s~~~I~~~L~~ 224 (385)
+...| . -+=||+.++.+|...+. ....++.++.+-| +-+=---.+.|..
T Consensus 57 ----------nas~~-~-t~cAE~~Ai~~A~~~G~~~l~~i~v~~~~~~~~~~PCG~Crq~l~E 108 (146)
T 2fr5_A 57 ----------NACYP-L-GVCAERTAIQKAISEGYKDFRAIAISSDLQEEFISPCGACRQVMRE 108 (146)
T ss_dssp ----------CSSGG-G-CBCHHHHHHHHHHHTTCCCEEEEEEEESCSSSCCCCCHHHHHHHHH
T ss_pred ----------ccCCC-C-CcCHHHHHHHHHHhCCCCceEEEEEEeCCCCcccCCCHHHHHHHHH
Confidence 00011 1 14589999999998643 4667777776666 5565555555543
No 8
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=5.45 E-value=1.1e+03 Score=23.31 Aligned_cols=86 Identities=8% Similarity=0.023 Sum_probs=50.9
Q ss_pred CCcEEEEEEe-cCCCChHHHHHHHHhccCCceEEEEeeCCCCCCCC--------CCCCcccccccCCCccccCCccHHHH
Q 040146 115 VPKIAFMFLT-KGPLPLAPLWEKFFKGHEGLYSIYVHPHPAYNGKF--------SPSSVFYRRQIPSQPAEWGEMSMCEA 185 (385)
Q Consensus 115 ~~KIAfLiLa-~~p~~l~rLw~~~~~~~~~~ysIYIHiD~~~~~~~--------~~~~vF~~r~Ips~~V~WG~~SlV~A 185 (385)
.|+|+.++.+ +....+++.++.+.......+.|.|--|.+-.... ..+++-+ + .-...+...|
T Consensus 374 ~~~vsiii~~yn~~~~l~~~l~s~~~q~~~~~eiivvdd~S~d~t~~~~~~~~~~~~~i~~---~-----~~~n~G~~~a 445 (625)
T 2z86_A 374 VPLVSIYIPAYNCSKYIVRCVESALNQTITDLEVCICDDGSTDDTLRILQEHYANHPRVRF---I-----SQKNKGIGSA 445 (625)
T ss_dssp SCSEEEEEEESSCTTTHHHHHHHHHSSSCCSEEEEEEEESCSSSHHHHHHHHHTTCTTEEE---E-----EECCCCHHHH
T ss_pred CCeEEEEEeCCCCHHHHHHHHHHHHhCcCCCeEEEEEECcCChhHHHHHHHHHhhCCcEEE---E-----eCCCCCHHHH
Confidence 5789999999 66788899999998644445677666554322110 1122211 1 1112234555
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCcccC
Q 040146 186 ERRLLANALLDVSNEWFILLSESCVPL 212 (385)
Q Consensus 186 el~LL~~AL~d~~n~~fvLLSgsdiPL 212 (385)
--.+++.| ..+|+++|-..|++-
T Consensus 446 ~n~g~~~a----~g~~i~~ld~D~~~~ 468 (625)
T 2z86_A 446 SNTAVRLC----RGFYIGQLDSDDFLE 468 (625)
T ss_dssp HHHHHHHC----CSSEEEECCTTCEEC
T ss_pred HHHHHHhc----CCCEEEEECCCcccC
Confidence 55555544 458888888888763
No 9
>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics; NMR {Homo sapiens}
Probab=5.43 E-value=5.1e+02 Score=20.36 Aligned_cols=37 Identities=16% Similarity=0.076 Sum_probs=25.9
Q ss_pred ccCCCccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCC
Q 040146 169 QIPSQPAEWGEMSMCEAERRLLANALLDVSNEWFILLSES 208 (385)
Q Consensus 169 ~Ips~~V~WG~~SlV~Ael~LL~~AL~d~~n~~fvLLSgs 208 (385)
++....-.||.+|.-+||..|++.. . +-.+.|=-|++
T Consensus 17 ~~~~~~WyhG~isR~eAe~lL~~~~-~--~G~FLVR~S~~ 53 (118)
T 2el8_A 17 RALETPSCFLKVSRLEAQLLLERYP-E--CGNLLLRPSGD 53 (118)
T ss_dssp CCSSSCTTCCCCCHHHHHHHHHHSS-T--TCSBEEEECCS
T ss_pred cccCCCceecCCCHHHHHHHHhhCC-C--CcEEEEeeCCC
Confidence 3445678899999999999887654 2 33556665654
No 10
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=5.42 E-value=2.5e+02 Score=23.27 Aligned_cols=11 Identities=45% Similarity=0.486 Sum_probs=10.3
Q ss_pred CCChHHHHHHH
Q 040146 91 NMNDTELFWRA 101 (385)
Q Consensus 91 ~~~d~el~~~a 101 (385)
+||||||-.||
T Consensus 16 ~l~d~el~~ra 26 (121)
T 3kp1_E 16 NLSDEELQTRF 26 (121)
T ss_dssp TCCHHHHHHHH
T ss_pred hCCHHHHHHHH
Confidence 89999999988
Done!