Query 040146
Match_columns 385
No_of_seqs 256 out of 823
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 08:30:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040146.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040146hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qg8a_ c.68.1.1 (A:) Spore co 34.3 1.1E+02 0.0078 24.5 11.5 109 116-231 1-123 (255)
2 d2qalc1 d.52.3.1 (C:1-105) Rib 15.8 23 0.0017 26.7 1.2 31 260-290 18-48 (105)
3 d1iioa_ a.39.4.1 (A:) Hypothet 12.8 26 0.0019 25.5 0.6 20 204-223 60-79 (84)
4 d1d4ta_ d.93.1.1 (A:) The Xlp 10.3 88 0.0064 22.1 3.1 21 172-192 3-23 (104)
5 d1phza1 d.58.18.3 (A:19-115) P 9.7 2.8E+02 0.02 19.7 5.8 30 111-140 10-40 (97)
6 d2uubc1 d.52.3.1 (C:2-106) Rib 8.0 38 0.0028 25.3 -0.0 30 260-289 18-47 (105)
7 d2shpa2 d.93.1.1 (A:2-110) Tyr 5.9 1.7E+02 0.012 21.0 2.9 22 172-193 2-23 (109)
8 d2h8pc1 f.14.1.1 (C:22-78) Pot 5.7 2.4E+02 0.017 18.3 3.3 29 26-54 3-31 (57)
9 d2d30a1 c.97.1.1 (A:1-124) mon 5.5 2.3E+02 0.017 21.0 3.6 41 183-223 52-94 (124)
10 d1c9fa_ d.15.2.1 (A:) Caspase- 5.5 44 0.0032 24.4 -0.9 16 290-306 55-70 (87)
No 1
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=34.27 E-value=1.1e+02 Score=24.50 Aligned_cols=109 Identities=8% Similarity=0.130 Sum_probs=63.1
Q ss_pred CcEEEEEEe-cCCCChHHHHHHHHhccCCceEEEEeeCCCCCC------CC-CCCCcccccccCCCcccc----CCccHH
Q 040146 116 PKIAFMFLT-KGPLPLAPLWEKFFKGHEGLYSIYVHPHPAYNG------KF-SPSSVFYRRQIPSQPAEW----GEMSMC 183 (385)
Q Consensus 116 ~KIAfLiLa-~~p~~l~rLw~~~~~~~~~~ysIYIHiD~~~~~------~~-~~~~vF~~r~Ips~~V~W----G~~SlV 183 (385)
|||..+|-+ ++..-+++.++.+.......+.|+|+-|.+-.. .+ ...++ +.+......+ ...+.-
T Consensus 1 P~vSiiip~yN~~~~l~~~l~Si~~Qt~~~~eiivvdd~S~d~t~~~l~~~~~~~~i---~~~~~~~~~~~~~~~~~g~~ 77 (255)
T d1qg8a_ 1 PKVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRV---RFYQSDISGVKERTEKTRYA 77 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTE---EEEECCCCSHHHHHSSCHHH
T ss_pred CEEEEEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHhhhhccc---ccccccccccccccccchhc
Confidence 789999999 667788999999887555568898888854211 11 11111 0011111111 233333
Q ss_pred HHHHHHHHHHHhCCCCCEEEEecCCcccCcC-hHHHHHHHH-hCCCCceE
Q 040146 184 EAERRLLANALLDVSNEWFILLSESCVPLHN-FSIVYYYIS-KSRYSFME 231 (385)
Q Consensus 184 ~Ael~LL~~AL~d~~n~~fvLLSgsdiPL~s-~~~I~~~L~-~~~~sFIe 231 (385)
.|--.+++.| +.+|++.|-+.|++..+ .+.+.+++. +.+..++-
T Consensus 78 ~a~N~gi~~a----~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~~~~~~v~ 123 (255)
T d1qg8a_ 78 ALINQAIEMA----EGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIY 123 (255)
T ss_dssp HHHHHHHHHC----CCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEE
T ss_pred cccccccccc----ccccccccccccccccchHHHHHHHHHhCCCCCeEe
Confidence 3433344443 56899999999998765 344455554 34555653
No 2
>d2qalc1 d.52.3.1 (C:1-105) Ribosomal protein S3 N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=15.81 E-value=23 Score=26.66 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=24.7
Q ss_pred ccceeeecHHHHHHHHhcccchhHHHhccCC
Q 040146 260 GSQWFEINRRLAVDIIEDTSYYPKFRDFCKP 290 (385)
Q Consensus 260 GSQWf~LtR~~a~~Il~d~~~~~~F~~~c~~ 290 (385)
.|.||+=.++.+++|.+|.....-..+++..
T Consensus 18 ~S~Wfa~~~~Y~~~l~eD~~IR~~i~k~~~~ 48 (105)
T d2qalc1 18 NSTWFANTKEFADNLDSDFKVRQYLTKELAK 48 (105)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred CCEEcCCccchHHHHHHHHHHHHHHHHHHHh
Confidence 6999999999999999999776555555543
No 3
>d1iioa_ a.39.4.1 (A:) Hypothetical protein MTH865 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=12.84 E-value=26 Score=25.52 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=17.5
Q ss_pred EecCCcccCcChHHHHHHHH
Q 040146 204 LLSESCVPLHNFSIVYYYIS 223 (385)
Q Consensus 204 LLSgsdiPL~s~~~I~~~L~ 223 (385)
+|+++|+|++|.+++.+-+.
T Consensus 60 ~l~~~DFP~ksae~lad~ii 79 (84)
T d1iioa_ 60 VLTADDFPFKSAEEVADTIV 79 (84)
T ss_dssp GSCGGGSBCSHHHHHHHHHH
T ss_pred hcCcccCCCCCHHHHHHHHH
Confidence 47899999999999988775
No 4
>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.30 E-value=88 Score=22.08 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=17.8
Q ss_pred CCccccCCccHHHHHHHHHHH
Q 040146 172 SQPAEWGEMSMCEAERRLLAN 192 (385)
Q Consensus 172 s~~V~WG~~SlV~Ael~LL~~ 192 (385)
+.+-+||.+|.-+||..|.+.
T Consensus 3 ~~pwyhG~isR~eAe~lL~~~ 23 (104)
T d1d4ta_ 3 AVAVYHGKISRETGEKLLLAT 23 (104)
T ss_dssp TCTTBCCSCCHHHHHHHHHHH
T ss_pred cCCccccCCCHHHHHHHHhhC
Confidence 457789999999999888765
No 5
>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.68 E-value=2.8e+02 Score=19.70 Aligned_cols=30 Identities=17% Similarity=0.135 Sum_probs=23.8
Q ss_pred CCCCCCcEEEEEEe-cCCCChHHHHHHHHhc
Q 040146 111 PFKRVPKIAFMFLT-KGPLPLAPLWEKFFKG 140 (385)
Q Consensus 111 p~~~~~KIAfLiLa-~~p~~l~rLw~~~~~~ 140 (385)
|-+..-|...+|.+ +.|..|..++..|-+.
T Consensus 10 ~~~~~~ktSl~f~~~~~pGaL~~vL~~f~~~ 40 (97)
T d1phza1 10 NSNQNGAISLIFSLKEEVGALAKVLRLFEEN 40 (97)
T ss_dssp CCCSSCCEEEEEEEECCTTHHHHHHHHHHTT
T ss_pred CCCCCCcEEEEEEeCCCCCHHHHHHHHHHHC
Confidence 34456689999999 7888999999998763
No 6
>d2uubc1 d.52.3.1 (C:2-106) Ribosomal protein S3 N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=8.00 E-value=38 Score=25.31 Aligned_cols=30 Identities=13% Similarity=0.213 Sum_probs=23.9
Q ss_pred ccceeeecHHHHHHHHhcccchhHHHhccC
Q 040146 260 GSQWFEINRRLAVDIIEDTSYYPKFRDFCK 289 (385)
Q Consensus 260 GSQWf~LtR~~a~~Il~d~~~~~~F~~~c~ 289 (385)
.|.||+=.++.+.++.+|.....-+.++++
T Consensus 18 ~S~W~a~~~~y~~~l~eD~~IR~~i~k~~~ 47 (105)
T d2uubc1 18 ESRWYAGKKQYRHLLLEDQRIRGLLEKELY 47 (105)
T ss_dssp SCBCCCCTTTTTHHHHHHHHHHHHHHHSTT
T ss_pred CceEcCChhhhHHHHHHHHHHHHHHHhhcc
Confidence 699999899999999999877655555444
No 7
>d2shpa2 d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.86 E-value=1.7e+02 Score=20.95 Aligned_cols=22 Identities=27% Similarity=0.175 Sum_probs=17.7
Q ss_pred CCccccCCccHHHHHHHHHHHH
Q 040146 172 SQPAEWGEMSMCEAERRLLANA 193 (385)
Q Consensus 172 s~~V~WG~~SlV~Ael~LL~~A 193 (385)
++.-.||.+|.-+||..|++..
T Consensus 2 ~~~Wy~g~isR~~Ae~lL~~~~ 23 (109)
T d2shpa2 2 SRRWFHPNITGVEAENLLLTRG 23 (109)
T ss_dssp CSTTBCSSCCHHHHHHHHHHHC
T ss_pred CCccccCCCCHHHHHHHHhhCC
Confidence 4567899999999998886653
No 8
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=5.68 E-value=2.4e+02 Score=18.33 Aligned_cols=29 Identities=14% Similarity=-0.033 Sum_probs=18.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhcccc
Q 040146 26 LSLKFMQIFLMFLVVGLCFSIIGLYTTKF 54 (385)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (385)
+..|-+...++++++++.++..++|..-+
T Consensus 3 ~~~R~~~~~~~~~~i~i~~~s~~~y~~E~ 31 (57)
T d2h8pc1 3 LHWRAAGAATVLLVIVLLAGSYLAVLAER 31 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555666666666666667667766644
No 9
>d2d30a1 c.97.1.1 (A:1-124) mono-domain cytidine deaminase {Bacillus anthracis [TaxId: 1392]}
Probab=5.51 E-value=2.3e+02 Score=21.01 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhCC--CCCEEEEecCCcccCcChHHHHHHHH
Q 040146 183 CEAERRLLANALLDV--SNEWFILLSESCVPLHNFSIVYYYIS 223 (385)
Q Consensus 183 V~Ael~LL~~AL~d~--~n~~fvLLSgsdiPL~s~~~I~~~L~ 223 (385)
+=||+..+.+|...+ ....++..++++=|+-+=---.++|.
T Consensus 52 ~CAEr~Ai~~a~~~g~~~~~~i~v~~~~~~~~~PCG~CRQ~l~ 94 (124)
T d2d30a1 52 NCAERTALFKAVSEGDKEFVAIAIVADTKRPVPPCGACRQVMV 94 (124)
T ss_dssp BCHHHHHHHHHHHTTCCCEEEEEEEESCSSCCCCCHHHHHHHH
T ss_pred cCHHHHHHHHHHhcCCceeEEEEEEcCCCCccCCchHHHHHHH
Confidence 468888888888864 34667777777766655544455543
No 10
>d1c9fa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.48 E-value=44 Score=24.37 Aligned_cols=16 Identities=13% Similarity=0.121 Sum_probs=12.1
Q ss_pred CCCccCchhHHHHhhcc
Q 040146 290 PGCYVDEHYFPTMLTIH 306 (385)
Q Consensus 290 ~~c~pDE~yf~TlL~n~ 306 (385)
.+.+ ||.||||+=.|.
T Consensus 55 GT~V-dEeYF~tLp~nT 70 (87)
T d1c9fa_ 55 GTEV-TDDCFPGLPNDA 70 (87)
T ss_dssp TCCB-CTTSCSSCCTTE
T ss_pred CcEe-cHHHHhcCCCCC
Confidence 4566 899999986664
Done!