BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040147
(412 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W2I|A Chain A, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
pdb|2W2I|B Chain B, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
pdb|2W2I|C Chain C, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
Length = 358
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 277 LSHAVA-SSCICLQNNNIPFNVLISDCGRRIILFPQCY 313
L H VA S L+ N IPFN + + G ++ FP Y
Sbjct: 261 LRHKVALISPTVLKENGIPFNCMTQEAGEFMVTFPYGY 298
>pdb|4FIE|A Chain A, Full-Length Human Pak4
pdb|4FIE|B Chain B, Full-Length Human Pak4
Length = 423
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 175 PRVLDCLPQRIDHESFLLALYVAKEAADP------FFRLGYNSLG 213
PR PQR+ HE F AL + + DP F ++G S G
Sbjct: 121 PRSPQREPQRVSHEQFRAALQLVVDPGDPRSYLDNFIKIGEGSTG 165
>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIF|B Chain B, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIG|A Chain A, Catalytic Domain Of Human Pak4
pdb|4FIG|B Chain B, Catalytic Domain Of Human Pak4
pdb|4FIH|A Chain A, Catalytic Domain Of Human Pak4 With Qkftglprqw Peptide
pdb|4FII|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIJ|A Chain A, Catalytic Domain Of Human Pak4
Length = 346
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 175 PRVLDCLPQRIDHESFLLALYVAKEAADP------FFRLGYNSLG 213
PR PQR+ HE F AL + + DP F ++G S G
Sbjct: 44 PRSPQREPQRVSHEQFRAALQLVVDPGDPRSYLDNFIKIGEGSTG 88
>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Cgp74514a
pdb|2J0I|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 303
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 182 PQRIDHESFLLALYVAKEAADP------FFRLGYNSLG 213
PQR+ HE F AL + + DP F ++G S G
Sbjct: 8 PQRVSHEQFRAALQLVVDPGDPRSYLDNFIKIGEGSTG 45
>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In
Complex With A Consensus Peptide
Length = 301
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 182 PQRIDHESFLLALYVAKEAADP------FFRLGYNSLG 213
PQR+ HE F AL + + DP F ++G S G
Sbjct: 6 PQRVSHEQFRAALQLVVDPGDPRSYLDNFIKIGEGSTG 43
>pdb|2QZA|A Chain A, Crystal Structure Of Salmonella Effector Protein Sopa
pdb|2QZA|B Chain B, Crystal Structure Of Salmonella Effector Protein Sopa
Length = 618
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 14/119 (11%)
Query: 105 FIAQLNEGRHLKKRATEFRIDQVLQSFDENKFN---FTKIGQEEMLFRLDDSKSPSVVAI 161
F+A N+ + ++R E ID +L + + + N Q+ +L D S S +A
Sbjct: 428 FLAAFNQ-QATQRRFGEL-IDIILSTEEHGELNQQFLAATNQKHSTVKLIDDASVSRLAT 485
Query: 162 ---------NVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEAADPFFRLGYNS 211
+SP Y H+L + D PQ+ F L+ A+ ++ F ++S
Sbjct: 486 IFDPLLPEGKLSPAHYQHILSAYHLTDATPQKQAETLFCLSTAFARYSSSAIFGTEHDS 544
>pdb|2QYU|A Chain A, Crystal Structure Of Salmonella Effector Protein Sopa
Length = 627
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 14/119 (11%)
Query: 105 FIAQLNEGRHLKKRATEFRIDQVLQSFDENKFN---FTKIGQEEMLFRLDDSKSPSVVAI 161
F+A N+ + ++R E ID +L + + + N Q+ +L D S S +A
Sbjct: 437 FLAAFNQ-QATQRRFGEL-IDIILSTEEHGELNQQFLAATNQKHSTVKLIDDASVSRLAT 494
Query: 162 ---------NVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEAADPFFRLGYNS 211
+SP Y H+L + D PQ+ F L+ A+ ++ F ++S
Sbjct: 495 IFDPLLPEGKLSPAHYQHILSAYHLTDATPQKQAETLFCLSTAFARYSSSAIFGTEHDS 553
>pdb|3SY2|A Chain A, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|B Chain B, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 621
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 14/119 (11%)
Query: 105 FIAQLNEGRHLKKRATEFRIDQVLQSFDENKFN---FTKIGQEEMLFRLDDSKSPSVVAI 161
F+A N+ + ++R E ID +L + + + N Q+ +L D S S +A
Sbjct: 431 FLAAFNQ-QATQRRFGEL-IDIILSTEEHGELNQQFLAATNQKHSTVKLIDDASVSRLAT 488
Query: 162 ---------NVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEAADPFFRLGYNS 211
+SP Y H+L + D PQ+ F L+ A+ ++ F ++S
Sbjct: 489 IFDPLLPEGKLSPAHYQHILSAYHLTDATPQKQAETLFCLSTAFARYSSSAIFGTEHDS 547
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,762,496
Number of Sequences: 62578
Number of extensions: 472216
Number of successful extensions: 1079
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1076
Number of HSP's gapped (non-prelim): 8
length of query: 412
length of database: 14,973,337
effective HSP length: 101
effective length of query: 311
effective length of database: 8,652,959
effective search space: 2691070249
effective search space used: 2691070249
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)