Query 040147
Match_columns 412
No_of_seqs 230 out of 744
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 05:35:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040147.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040147hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03103 GDP-L-galactose-hexos 100.0 3E-110 8E-115 842.2 33.3 374 1-382 1-394 (403)
2 KOG2720 Predicted hydrolase (H 100.0 4.9E-87 1.1E-91 651.4 21.8 386 1-398 1-407 (431)
3 COG4360 APA2 ATP adenylyltrans 100.0 1.5E-32 3.2E-37 258.7 11.4 252 80-368 28-297 (298)
4 PRK10687 purine nucleoside pho 99.5 2.6E-14 5.6E-19 124.2 9.1 96 135-230 4-109 (119)
5 COG0537 Hit Diadenosine tetrap 99.5 1E-13 2.2E-18 123.4 9.8 93 136-228 3-104 (138)
6 KOG3275 Zinc-binding protein o 99.5 1.1E-13 2.5E-18 118.2 7.7 95 134-228 16-119 (127)
7 PF09830 ATP_transf: ATP adeny 99.4 4.3E-13 9.4E-18 103.9 5.1 62 294-368 1-62 (62)
8 cd01276 PKCI_related Protein K 99.3 8.1E-12 1.7E-16 104.6 10.1 92 136-227 2-103 (104)
9 PF01230 HIT: HIT domain; Int 99.3 5.9E-12 1.3E-16 104.7 8.8 85 144-228 2-95 (98)
10 cd01275 FHIT FHIT (fragile his 99.3 1.2E-11 2.6E-16 107.6 10.7 93 136-228 1-103 (126)
11 cd01277 HINT_subgroup HINT (hi 99.3 2E-11 4.3E-16 101.7 10.3 93 136-228 2-103 (103)
12 cd00468 HIT_like HIT family: H 99.3 1.9E-11 4.2E-16 98.2 8.6 76 152-227 2-86 (86)
13 cd01278 aprataxin_related apra 99.3 3.1E-11 6.8E-16 101.3 9.8 91 136-227 2-104 (104)
14 PF11969 DcpS_C: Scavenger mRN 98.7 1.8E-08 3.9E-13 87.1 5.0 91 137-230 3-106 (116)
15 PRK11720 galactose-1-phosphate 98.6 6.4E-08 1.4E-12 98.5 7.4 94 135-228 195-302 (346)
16 KOG3379 Diadenosine polyphosph 98.6 1.6E-07 3.4E-12 82.9 8.5 78 152-229 21-107 (150)
17 TIGR00209 galT_1 galactose-1-p 98.6 1.6E-07 3.4E-12 95.7 8.0 94 135-228 195-302 (347)
18 cd00608 GalT Galactose-1-phosp 98.4 5.4E-07 1.2E-11 91.0 7.8 94 135-228 185-294 (329)
19 PLN02643 ADP-glucose phosphory 98.4 1.2E-06 2.5E-11 89.0 8.7 91 135-228 199-302 (336)
20 TIGR01239 galT_2 galactose-1-p 97.9 0.00053 1.1E-08 71.9 17.3 184 152-347 199-409 (489)
21 PRK05270 galactose-1-phosphate 97.8 0.00034 7.3E-09 73.5 13.5 185 152-348 202-413 (493)
22 KOG4359 Protein kinase C inhib 97.8 5.9E-05 1.3E-09 67.1 6.8 91 136-230 33-138 (166)
23 COG4468 GalT Galactose-1-phosp 97.2 0.0015 3.4E-08 66.9 9.5 183 154-348 206-415 (503)
24 PF04677 CwfJ_C_1: Protein sim 97.2 0.0047 1E-07 54.1 10.9 95 132-230 9-110 (121)
25 cd00608 GalT Galactose-1-phosp 97.0 0.031 6.7E-07 56.7 16.7 122 106-233 11-166 (329)
26 PLN02643 ADP-glucose phosphory 96.9 0.17 3.7E-06 51.7 20.6 76 156-233 70-180 (336)
27 PRK11720 galactose-1-phosphate 96.6 0.15 3.2E-06 52.3 17.7 187 157-365 72-338 (346)
28 TIGR00209 galT_1 galactose-1-p 95.4 0.99 2.1E-05 46.4 17.1 188 157-366 72-339 (347)
29 KOG0562 Predicted hydrolase (H 94.5 0.034 7.3E-07 51.2 3.3 72 155-230 23-107 (184)
30 KOG2476 Uncharacterized conser 94.5 0.057 1.2E-06 56.8 5.4 72 154-230 339-418 (528)
31 PF02611 CDH: CDP-diacylglycer 90.7 0.83 1.8E-05 44.2 7.1 72 154-228 32-117 (222)
32 COG1085 GalT Galactose-1-phosp 85.2 6 0.00013 40.6 9.7 66 168-234 92-168 (338)
33 PRK05471 CDP-diacylglycerol py 85.1 1.4 3.1E-05 43.2 5.0 72 154-228 61-146 (252)
34 TIGR00672 cdh CDP-diacylglycer 84.9 2.5 5.4E-05 41.6 6.5 72 154-228 60-145 (250)
35 PF02744 GalP_UDP_tr_C: Galact 75.2 16 0.00036 33.5 8.2 77 151-227 32-119 (166)
36 KOG2477 Uncharacterized conser 74.8 12 0.00027 40.3 8.1 79 151-230 425-509 (628)
37 PF01087 GalP_UDP_transf: Gala 72.3 47 0.001 30.8 10.6 119 109-230 26-181 (183)
38 COG1085 GalT Galactose-1-phosp 67.4 7 0.00015 40.2 4.3 63 136-198 187-251 (338)
39 KOG2958 Galactose-1-phosphate 32.8 79 0.0017 32.2 5.1 77 151-227 218-308 (354)
40 COG2134 Cdh CDP-diacylglycerol 26.1 2.4E+02 0.0052 27.5 6.8 72 154-228 61-146 (252)
41 KOG2958 Galactose-1-phosphate 23.7 6.3E+02 0.014 25.9 9.5 30 203-233 151-181 (354)
42 PRK10119 putative hydrolase; P 23.7 92 0.002 30.3 3.7 55 353-408 76-135 (231)
43 PF11212 DUF2999: Protein of u 20.2 85 0.0018 25.4 2.2 36 347-382 19-56 (82)
No 1
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Probab=100.00 E-value=3.5e-110 Score=842.23 Aligned_cols=374 Identities=74% Similarity=1.241 Sum_probs=354.9
Q ss_pred CccccccceeeccccccccccccCCCCCCccCccCCCCCCCCCccceeeccCccccccc----ccCCCcccchHHHHHHH
Q 040147 1 MLTIKRVPTVVSNYQDQEETASENSEAGCGSNCLGNCSLPVSKLPLYQITKDKVDLTEE----ASGEEPRMSFLHDLLLG 76 (412)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----~~~~~~~~s~fd~lll~ 76 (412)
|||||||||||||||++++.. ||||||||+||++|+|+|+|+|+..+....+. .+.++...|+||++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~c~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~s~ld~~L~~ 74 (403)
T PLN03103 1 MLTIKRVPTVVSNYQDDDELG------GCGRNCLGKCCLPGAKLPLYAFKKVSKDDSGKLGSFSSKPEPSVSFLDSLLLA 74 (403)
T ss_pred Ccceeecchhhhhhhhhcccc------CcchhhhhhcCCCCccCchhhhcccccccccccccccccCcCCccHHHHHHHH
Confidence 999999999999999999554 99999999999999999999999998776542 56778899999999999
Q ss_pred HHHHHHHcCCceecccceeEEEeCCceEEEEEEccccccccccchhhhcccccccCcCCCCCCCCCcccccEEEecC---
Q 040147 77 QWEDRMNRGLFRYDVTSCETKIIPGEYGFIAQLNEGRHLKKRATEFRIDQVLQSFDENKFNFTKIGQEEMLFRLDDS--- 153 (412)
Q Consensus 77 ~We~a~~~G~fry~l~~~~tK~~~g~~~fvvQlNp~R~~kkrpt~~~id~~~~pf~~~kfnF~ki~~~Eil~~~~~~--- 153 (412)
+|+++|++|+|||+|++|+||++||+++|+||||++|++|||||++++|+++||||+.+|||+|+.++|++|++..+
T Consensus 75 ~Wedr~~~GlFrY~l~~~~tkvlpG~~gFvaQLN~~R~~krR~~~f~i~~v~qpFd~~kFNF~KV~~~EvLf~~~~~~~~ 154 (403)
T PLN03103 75 QWEDRMARGLFRYDVTACETKVIPGKYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGKKFNFTKVGQEEVLFQFEQGEDD 154 (403)
T ss_pred HHHHHHhcCCcccccccceeEEecCccceEEEecccchhccCCCccchhhccCCCCCCcccCCCCCCceeEEEEecCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999642
Q ss_pred -------------CCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHHHcCCCCeEEEEecCCCCCCCCe
Q 040147 154 -------------KSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEAADPFFRLGYNSLGAFATINH 220 (412)
Q Consensus 154 -------------~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~~~~~~gfrvfyNs~gA~ASv~H 220 (412)
++.++|++|+|||++||+||||+...|+||+|+.+++..++++|+++++++|||||||+||+|||||
T Consensus 155 ~~~~~~~~~~~~~~s~~~VlINvsPI~~gH~LlvP~~~~~lPQ~i~~~~l~la~~~a~~~~~p~frvgYNSlGA~ASvNH 234 (403)
T PLN03103 155 IPEFFPSAPIDASNSPNVVAINVSPIEYGHVLLVPRVLDCLPQRIDPDSFLLALYMAAEANNPYFRVGYNSLGAFATINH 234 (403)
T ss_pred ccccccCCccccCCCccEEEEeCCCCccCeEEEcCCcccCCCeEecHHHHHHHHHHHHhcCCCcEEEEecCCccccCcce
Confidence 5667999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeCCCCCCCCCCCcccccccccccCCcceEEeccCCcceeEEEecCCcHHHHHHHHHHHHHhhhCCCCCeEEEEE
Q 040147 221 LHFQAYYLPLPFPVEKAPTSRIVTVKGHQDTQVIISQLLNYPVRGLVFEVGKSLRDLSHAVASSCICLQNNNIPFNVLIS 300 (412)
Q Consensus 221 lHfq~~~~~~~lPiE~~~~~~l~~~~~~~~~g~~i~~l~~yP~~~fvf~~~~~~~~L~~~l~~~l~~L~~~~~PyNLlit 300 (412)
||||++|++.+||||++|++++.. .....++.+|++.+||+++|+|+++++.+++++.||+++++|+++++|||||+|
T Consensus 235 LHFQa~yl~~~lPvE~ap~~~l~~--~~~~~g~~vy~L~~yP~~~lvf~~~~~~~~l~~~v~~~~~~L~~~niP~NL~i~ 312 (403)
T PLN03103 235 LHFQAYYLANPFPVEKAPTVRIPH--GTAKSGVKVSELVDYPVRGLVFEGGSDLEDLANSVADACICLQDNNIPYNLLIS 312 (403)
T ss_pred eeeeecccCCCCccccCccccccc--cccCCCceEEEecCCCceEEEEEeCccHHHHHHHHHHHHHhhccCCcceEEEEE
Confidence 999999999999999999988852 223456789999999999999997778999999999999999999999999999
Q ss_pred cCCeEEEEEecchHhhhhcccccccccccccccchhcccceeeecChhHHHHHhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 040147 301 DCGRRIILFPQCYAEKQALGEVSQELLDTQVNPAAWEISGHIVLKRRKDFEEASEEYAWRVLSEVSLSEERFQEVKAYVL 380 (412)
Q Consensus 301 r~g~rv~l~PR~~~~kq~~ge~~~~lL~~~~spaa~ElaG~llvk~~edfe~lte~~~~~iL~evsl~e~~f~~l~~~l~ 380 (412)
++|||++|||+||++||++|++++++|+++||||+|||||||++|+++||+++||+.++++|+||++++++|++|++.|+
T Consensus 313 ~~g~rvflfP~Cy~~k~~~g~v~~~lL~s~~NPA~~EmsG~l~~~~~eDfe~lTE~~~~~il~EvsLse~~f~ev~~~i~ 392 (403)
T PLN03103 313 DCGKRVFLFPQCYAEKQALGEVSQELLDTQVNPAVWEISGHIVLKRKEDYERATEEYAWRLLAEVSLSEERFQEVKALCF 392 (403)
T ss_pred cCCeEEEEeCchhhhhhhccccchhHhhccCChhhHhhcceeeecchHhhhhcCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH
Q 040147 381 EA 382 (412)
Q Consensus 381 ~~ 382 (412)
+.
T Consensus 393 ~~ 394 (403)
T PLN03103 393 AA 394 (403)
T ss_pred hc
Confidence 87
No 2
>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=100.00 E-value=4.9e-87 Score=651.41 Aligned_cols=386 Identities=57% Similarity=0.967 Sum_probs=355.6
Q ss_pred CccccccceeeccccccccccccCCCCCCccCccCCCCCCC----------CCccceeeccCcccccccccCCCcccchH
Q 040147 1 MLTIKRVPTVVSNYQDQEETASENSEAGCGSNCLGNCSLPV----------SKLPLYQITKDKVDLTEEASGEEPRMSFL 70 (412)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~p~~~~~~~~~~~~~~~~~~~~~~s~f 70 (412)
|+.||||||++||||+++... .+.|||||||+.||+.| .++|+|.-+..+..++ ...++...++
T Consensus 1 ~~~ifr~p~~yS~~~~~~~~~---~~~~~~~~~L~l~~l~s~~~r~~~~~~~~~ply~~~ns~~~~e---~~~e~~~~~l 74 (431)
T KOG2720|consen 1 FLKIFRVPTVYSNYQKDGFSE---RFSGCGRNCLPLCCLNSADCRQKEDQEVKLPLYRCKNSKKSYE---TSLEGPVQFL 74 (431)
T ss_pred Ccceeeccccccccccccccc---cccCCcccccchhhccccccccchhhhhhhhHhhccccccccc---cccccHHHHH
Confidence 789999999999999998765 67899999999999999 8999999998775542 2445778899
Q ss_pred HHHHHHHHHHHHHcCCceecccceeEEEeCCceEEEEEEcccc-ccccccchhhhcccccccCcCCCCCCCCCcccccEE
Q 040147 71 HDLLLGQWEDRMNRGLFRYDVTSCETKIIPGEYGFIAQLNEGR-HLKKRATEFRIDQVLQSFDENKFNFTKIGQEEMLFR 149 (412)
Q Consensus 71 d~lll~~We~a~~~G~fry~l~~~~tK~~~g~~~fvvQlNp~R-~~kkrpt~~~id~~~~pf~~~kfnF~ki~~~Eil~~ 149 (412)
.++++.+||++.++|+|+|+|++|+||++||+|||++|||.+| +++||||++++ ++|||+..+|||+|+.++|++|.
T Consensus 75 ~~l~~~rWe~~~q~glF~Y~l~~c~tr~ipGkygf~aqLN~~R~~lrrrP~~f~~--v~~~F~h~~FNF~Kv~~~Ellf~ 152 (431)
T KOG2720|consen 75 ESLVKGRWEDRFQRGLFRYDLTACETRVIPGKYGFYAQLNEGRNHLRRRPTEFRV--VLQPFDHMKFNFTKVGQEELLFQ 152 (431)
T ss_pred HHHHHHHHHHHHhhccccccccccceeccCcccceeeeeccccchhhcCCchhhh--cccccccceecccccccceEEEE
Confidence 9999999999999999999999999999999999999999999 78889999875 89999999999999999999999
Q ss_pred EecC--------CCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHHHcCCCCeEEEEecCCCCCCCCee
Q 040147 150 LDDS--------KSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEAADPFFRLGYNSLGAFATINHL 221 (412)
Q Consensus 150 ~~~~--------~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~~~~~~gfrvfyNs~gA~ASv~Hl 221 (412)
++.. .+..+|+||++||++||+|+||+..+|.||+||.+++..+..+|++.+++.||++|||+||.||||||
T Consensus 153 ~k~~~~~m~~dpe~~~vvaIN~sPie~~H~LiiP~V~kc~pQrit~~al~lav~~m~~~dd~~frlgyNSlga~AsVNHL 232 (431)
T KOG2720|consen 153 FKAATDPMPGDPENSPVVAINVSPIEYGHVLIIPRVLKCLPQRITHKALLLAVTMMAEADDPYFRLGYNSLGAFASVNHL 232 (431)
T ss_pred EecCCCCCCCCcccCceEEEecCccccCcEEEecchhccCcceeeHHHHHHHHHHHHhcCCchhheecccchhhhhhhhh
Confidence 9642 22459999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCCCCCCCCCCcccccccccccCCcceEE-eccCCcceeEEEecCCcHHHHHHHHHHHHHhhhCCCCCeEEEEE
Q 040147 222 HFQAYYLPLPFPVEKAPTSRIVTVKGHQDTQVIIS-QLLNYPVRGLVFEVGKSLRDLSHAVASSCICLQNNNIPFNVLIS 300 (412)
Q Consensus 222 Hfq~~~~~~~lPiE~~~~~~l~~~~~~~~~g~~i~-~l~~yP~~~fvf~~~~~~~~L~~~l~~~l~~L~~~~~PyNLlit 300 (412)
|||++|++.++||++++.+++.. ...++.+. ++..||+..+.+.+.++.+++...+|.++.+|+++|+|||||++
T Consensus 233 Hfha~y~p~d~~i~~~p~~~l~~----~vn~~~ir~p~~~~pv~~~~~ds~~~~~e~~d~vy~c~~~l~~nN~phNlfls 308 (431)
T KOG2720|consen 233 HFHAYYLPMDFPIEKAPLDKLTT----TVNGVKIRAPLLGYPVRFLLNDSGEQVAELVDTVYDCAVCLQNNNIPHNLFLS 308 (431)
T ss_pred hhhhhhccccCccccCcchhhcc----ccceEEecccccccceEEEEeccchHHHHHHHHHHHHHHHHhhCCCCceEEee
Confidence 99999999999999999998852 35666676 78899999999999999999999999999999999999999999
Q ss_pred cCCeEEEEEecchHhhhhcccccccccccccccchhcccceeeecChhHHHHHhHHHHHHHHH-hccCCHHHHHHHHHHH
Q 040147 301 DCGRRIILFPQCYAEKQALGEVSQELLDTQVNPAAWEISGHIVLKRRKDFEEASEEYAWRVLS-EVSLSEERFQEVKAYV 379 (412)
Q Consensus 301 r~g~rv~l~PR~~~~kq~~ge~~~~lL~~~~spaa~ElaG~llvk~~edfe~lte~~~~~iL~-evsl~e~~f~~l~~~l 379 (412)
+.|.|+++-|+||..+||+||.+...+.++||||+|||||+++.|+++|||.++|+.+|++++ |+|+++++|.++...+
T Consensus 309 ~~grR~g~~pqcyvf~~a~~e~~~~k~~tqfNpa~~ElaG~m~l~~~~~~E~asE~~v~r~i~teasls~e~fre~~tli 388 (431)
T KOG2720|consen 309 DQGRRIGLSPQCYVFKQALGEVSVNKLLTQFNPAVWELAGHMVLKRKEDYEGASELQVWRLIATEASLSEERFREVITLI 388 (431)
T ss_pred ccCccccCCCceEEehhhhcccccccChhhcChHHHhhcCCccccchhhhccccHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 888999999999999999999888888899999999999999999999999999999999999 9999999999999999
Q ss_pred HHHhccCCccccccccccc
Q 040147 380 LEAVGLQKPILEENGIIQE 398 (412)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~ 398 (412)
.+++++..-+++.++.|.+
T Consensus 389 ~eaig~s~q~~d~l~~i~~ 407 (431)
T KOG2720|consen 389 FEAIGYSLQEEDPLTGITS 407 (431)
T ss_pred hhhhccccccccccccccc
Confidence 9999999855566665543
No 3
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Probab=99.98 E-value=1.5e-32 Score=258.70 Aligned_cols=252 Identities=18% Similarity=0.195 Sum_probs=170.7
Q ss_pred HHHHcCCceecccceeEEEeCCceEEEEEE--ccccccccccchhhhcccccccCcCCCCCCCCCcccccEEEecCCCcE
Q 040147 80 DRMNRGLFRYDVTSCETKIIPGEYGFIAQL--NEGRHLKKRATEFRIDQVLQSFDENKFNFTKIGQEEMLFRLDDSKSPS 157 (412)
Q Consensus 80 ~a~~~G~fry~l~~~~tK~~~g~~~fvvQl--Np~R~~kkrpt~~~id~~~~pf~~~kfnF~ki~~~Eil~~~~~~~~~~ 157 (412)
.|...|+.. +.++..+-+..+++.|.+++ ||.|.. -+++-+-| |+. -.|.+-.+ -+|.. ..++.|
T Consensus 28 ~al~tgal~-pitT~~~~~e~~~v~f~vril~k~~rkk--~~~~k~e~----~~~---nPflpy~~--dlfvg-~~s~th 94 (298)
T COG4360 28 HALNTGALD-PITTEFYFVEQDGVDFLVRILSKPTRKK--ADKKKRED----PSA---NPFLPYVQ--DLFVG-DISDTH 94 (298)
T ss_pred hhhhccccC-CcccceeEecccchhHHHHHhccccccc--Cccccccc----ccC---CCccccch--Hhhcc-CCchhH
Confidence 344445554 55554555555778888884 887762 12221111 211 11222211 12222 236689
Q ss_pred EEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHHHcCCCCeEEEEec-CCCCCCCCeeEEEEeeCCCCCCCCC
Q 040147 158 VVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEAADPFFRLGYNS-LGAFATINHLHFQAYYLPLPFPVEK 236 (412)
Q Consensus 158 ~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~~~~~~gfrvfyNs-~gA~ASv~HlHfq~~~~~~~lPiE~ 236 (412)
.+++|||||.+.|+|+|++.|++|...||..+|.+|+.++...+ |+ +|||| +.||||++|+|+|++++|. ++
T Consensus 95 ~~llNKF~VVdeHlLiVTrefedQ~s~LTl~Df~ta~~vL~~ld--gl-vFYNsGp~aGaSq~HkHLQi~pmPf---v~- 167 (298)
T COG4360 95 KLLLNKFPVVDEHLLIVTREFEDQESALTLADFTTAYAVLCGLD--GL-VFYNSGPIAGASQDHKHLQIVPMPF---VA- 167 (298)
T ss_pred hhhhhcCCcccceeEEeehhhhhccccCCHHHHHHHHHHHhccc--ce-EEecCCCCcCcCCCccceeEeeccc---cc-
Confidence 99999999999999999999999999999999999999998886 65 99999 9999999999999999863 11
Q ss_pred CCcccccccccccCCcceEEeccCCcceeEEEecCC---cHHHH-----HHHHHHHHHhh----hCC---CCCeEEEEEc
Q 040147 237 APTSRIVTVKGHQDTQVIISQLLNYPVRGLVFEVGK---SLRDL-----SHAVASSCICL----QNN---NIPFNVLISD 301 (412)
Q Consensus 237 ~~~~~l~~~~~~~~~g~~i~~l~~yP~~~fvf~~~~---~~~~L-----~~~l~~~l~~L----~~~---~~PyNLlitr 301 (412)
..+.++.++.++.+...... ..|+..++...+. ..+++ .+.+.+++..+ .+. .-|||||+||
T Consensus 168 -~~~~lpn~~dhFl~t~nteP--lvsF~havapl~~~~~~d~dlgamcy~sIyqrlL~~~gl~t~e~p~~~~sYNlllTr 244 (298)
T COG4360 168 -FQDQLPNGKDHFLPTFNTEP--LVSFAHAVAPLPSAWVVDEDLGAMCYLSIYQRLLTFFGLWTNEDPELSKSYNLLLTR 244 (298)
T ss_pred -cccccCchHhhcchhcccCC--CcchhheeccCChHhccChhhhhHHHHHHHHHHHHHHhhhccCCcccCcceeeeeee
Confidence 22334334444443322221 2335555554331 22232 13455555443 333 2369999999
Q ss_pred CCeEEEEEecchHhhhhcccccccccccccccchhcccceeeecChhHHHHHhHHHHHHHHHhccCC
Q 040147 302 CGRRIILFPQCYAEKQALGEVSQELLDTQVNPAAWEISGHIVLKRRKDFEEASEEYAWRVLSEVSLS 368 (412)
Q Consensus 302 ~g~rv~l~PR~~~~kq~~ge~~~~lL~~~~spaa~ElaG~llvk~~edfe~lte~~~~~iL~evsl~ 368 (412)
+ | |+|+||+.+. + ..|++|+++|||.|++|+++.++.+|+...+.||.||+++
T Consensus 245 e-w-i~iVPRSqe~-------~-----q~I~vNslGfaG~lLvkn~e~le~ltq~gpl~iL~evgia 297 (298)
T COG4360 245 E-W-ICIVPRSQED-------S-----QSISVNSLGFAGMLLVKNEEELEILTQHGPLAILLEVGIA 297 (298)
T ss_pred e-e-EEEeecchhh-------h-----heecccccccceeEEecCHHHHHHHhhCCchhhHhhhccC
Confidence 6 5 9999998764 1 1378889999999999999999999999999999999986
No 4
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=99.53 E-value=2.6e-14 Score=124.20 Aligned_cols=96 Identities=20% Similarity=0.160 Sum_probs=78.0
Q ss_pred CCCCCCCCcccccEEEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHH---H----HHHH--cCCCCe
Q 040147 135 KFNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLAL---Y----VAKE--AADPFF 205 (412)
Q Consensus 135 kfnF~ki~~~Eil~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~---~----la~~--~~~~gf 205 (412)
.+.||++..++++..+.++++.+++++|.+|+.+||+|+||+++......|++++...+. + +++. .+..||
T Consensus 4 ~CiFC~I~~g~~p~~~v~edd~~~aflD~~P~~~GH~LViPK~H~~~l~dl~~~~~~~l~~l~~~~~~~~~~~~~~~~g~ 83 (119)
T PRK10687 4 ETIFSKIIRREIPSDIVYQDELVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGY 83 (119)
T ss_pred CCchhhhhcCCCCCCEEEECCCEEEEEcCCCCCCccEEEEehhHhCChhHCChHHHHHHHHHHHHHHHHHHHhCCCCCce
Confidence 367999999999999999999999999999999999999999976666667776433332 2 2221 235699
Q ss_pred EEEEec-CCCCCCCCeeEEEEeeCCC
Q 040147 206 RLGYNS-LGAFATINHLHFQAYYLPL 230 (412)
Q Consensus 206 rvfyNs-~gA~ASv~HlHfq~~~~~~ 230 (412)
++++|. ..||+||.|+|+|+++...
T Consensus 84 ~l~~n~G~~agQ~V~HlHiHvI~g~~ 109 (119)
T PRK10687 84 RLIMNTNRHGGQEVYHIHMHLLGGRP 109 (119)
T ss_pred EEEEeCCCcCCcccCEEEEEECCCcc
Confidence 999998 8899999999999988743
No 5
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=99.49 E-value=1e-13 Score=123.45 Aligned_cols=93 Identities=20% Similarity=0.233 Sum_probs=78.3
Q ss_pred CCCCCCCcccccEEEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHHHc--------CCCCeEE
Q 040147 136 FNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEA--------ADPFFRL 207 (412)
Q Consensus 136 fnF~ki~~~Eil~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~~~--------~~~gfrv 207 (412)
+.||++..+|++..+.++++..++++|++|+.+||+||||+++...-..++++.+..++.++..+ +..||++
T Consensus 3 ciFc~ii~~e~~~~~Vye~~~~~afld~~P~~~gH~LviPk~h~~~l~~l~~~~~~~l~~~~~~ia~al~~~~~~~g~ni 82 (138)
T COG0537 3 CIFCKIIRGEIPANKVYEDEHVLAFLDIYPAAPGHTLVIPKRHVSDLEDLDPEELAELFLLAQKIAKALKEAFGADGYNI 82 (138)
T ss_pred ceeeeeecCCCCceEEEeCCCEEEEecCCCCCCCeEEEEeccchhhhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCceEE
Confidence 57999989999999999999999999999999999999999866666667777665555544322 3579999
Q ss_pred EEec-CCCCCCCCeeEEEEeeC
Q 040147 208 GYNS-LGAFATINHLHFQAYYL 228 (412)
Q Consensus 208 fyNs-~gA~ASv~HlHfq~~~~ 228 (412)
+.|. ..||++|+|+|+|++++
T Consensus 83 ~~N~g~~agq~V~HlH~HvIPr 104 (138)
T COG0537 83 GINNGKAAGQEVFHLHIHIIPR 104 (138)
T ss_pred EEecCcccCcCcceEEEEEcCC
Confidence 9999 77889999999999986
No 6
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms]
Probab=99.47 E-value=1.1e-13 Score=118.21 Aligned_cols=95 Identities=21% Similarity=0.233 Sum_probs=75.7
Q ss_pred CCCCCCCCCcccccEEEecCCCcEEEEEcCCCCCCceEEEeeccccCcccc---cCHH----HHHHHHHHHHHcC-CCCe
Q 040147 134 NKFNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQR---IDHE----SFLLALYVAKEAA-DPFF 205 (412)
Q Consensus 134 ~kfnF~ki~~~Eil~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~---l~~~----~l~~~~~la~~~~-~~gf 205 (412)
..+.|+|+..+||+..+.+|++..+++.+++|..|+|+|+||+.+..+-.. .+.+ .+..+.++|+.++ ..||
T Consensus 16 ~~tIF~kIi~keIPa~ii~Edd~~lAF~Di~Pqap~HfLvIPK~hi~~~s~aed~~~e~Lg~ll~~~k~vak~~Gl~~gY 95 (127)
T KOG3275|consen 16 APTIFCKIIRKEIPAKIIFEDDRCLAFHDIAPQAPGHFLVIPKKHITQLSKAEDRDDELLGHLLPVAKKVAKALGLEDGY 95 (127)
T ss_pred CCcEeeeeecccCCcceEeeccceEEEEecCCCCCceEEEeecccccchhhcccCCHHHHHHHHHHHHHHHHHhCcccce
Confidence 447899999999999999999999999999999999999999995222111 2333 3445555666665 5689
Q ss_pred EEEEec-CCCCCCCCeeEEEEeeC
Q 040147 206 RLGYNS-LGAFATINHLHFQAYYL 228 (412)
Q Consensus 206 rvfyNs-~gA~ASv~HlHfq~~~~ 228 (412)
|+.-|- ..|.+||.|+|||++..
T Consensus 96 rvv~NnG~~g~QsV~HvH~HvlgG 119 (127)
T KOG3275|consen 96 RVVQNNGKDGHQSVYHVHLHVLGG 119 (127)
T ss_pred eEEEcCCcccceEEEEEEEEEeCC
Confidence 999998 88889999999999873
No 7
>PF09830 ATP_transf: ATP adenylyltransferase; InterPro: IPR019200 Diadenosine 5',5'''-P-1,P-4-tetraphosphate (Ap4A) and related diadenosine oligoposphates such as Ap3A are important intracellular and extracellular signalling molecules in prokaryotes and eukaryotes []. They are implicated in the regulation of many vital celluar functions including stress response, cell division and apoptosis. Synthesis primarily occurs via aminoacyl-tRNA synthetases adding the AMP moiety of an aminoacyl-AMP to an acceptor nucleotide, and is an inevitable byproduct of protein synthesis. The concentration of these compounds must thus be controlled both to ensure the proper regulation of various celluar processes, but also to prevent their buildup to potentially toxic levels. This domain is found in a group of ATP adenylyltransferases found in bacteria and lower eukaryotes which catalyse the interconversion of Ap4A to ATP and ADP [, , ]. While these enzymes are thought to act primarily to break down Ap4A, there is evidence to suggest that in some circumstances they may also act in a biosynthetic role. Some variability in substrate range is apparent eg the cyanobacterial enzyme can also utilise Ap3A as a substrate, while the Saccharomyces enzymes apparently cannot.; GO: 0003877 ATP adenylyltransferase activity
Probab=99.38 E-value=4.3e-13 Score=103.89 Aligned_cols=62 Identities=18% Similarity=0.380 Sum_probs=55.7
Q ss_pred CeEEEEEcCCeEEEEEecchHhhhhcccccccccccccccchhcccceeeecChhHHHHHhHHHHHHHHHhccCC
Q 040147 294 PFNVLISDCGRRIILFPQCYAEKQALGEVSQELLDTQVNPAAWEISGHIVLKRRKDFEEASEEYAWRVLSEVSLS 368 (412)
Q Consensus 294 PyNLlitr~g~rv~l~PR~~~~kq~~ge~~~~lL~~~~spaa~ElaG~llvk~~edfe~lte~~~~~iL~evsl~ 368 (412)
|||+++|++ | |+|+||+.+. - ..+++.||++|+|++.++++++.+.+.+.++.++|++|++|
T Consensus 1 ~yNll~T~~-w-m~lvPR~~~~-------~----~~~i~~Nalg~~G~llvk~~~~~~~~~~~gp~~iL~~vg~P 62 (62)
T PF09830_consen 1 SYNLLMTRR-W-MMLVPRSREG-------F----SGGISVNALGFAGMLLVKSEEELDWLKEDGPMKILREVGFP 62 (62)
T ss_pred CceEEEecC-e-EEEEeccccc-------c----CCceeechhhheeeeeeCCHHHHHHHHHcCHHHHHHHhcCC
Confidence 799999996 5 9999998764 0 25689999999999999999999999999999999999986
No 8
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=99.33 E-value=8.1e-12 Score=104.61 Aligned_cols=92 Identities=21% Similarity=0.161 Sum_probs=71.4
Q ss_pred CCCCCCCcccccEEEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCH---HHHHHH----HHHHHHcC--CCCeE
Q 040147 136 FNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDH---ESFLLA----LYVAKEAA--DPFFR 206 (412)
Q Consensus 136 fnF~ki~~~Eil~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~---~~l~~~----~~la~~~~--~~gfr 206 (412)
+.||++..+|+.-.+.++++.++++++.+|..+||+|+||+++......|+. .++..+ .++++... ..||+
T Consensus 2 C~fc~i~~~e~~~~iv~e~~~~~a~~~~~p~~~gh~lIiPk~H~~~~~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~n 81 (104)
T cd01276 2 CIFCKIIRGEIPAKKVYEDDEVLAFHDINPQAPVHILVIPKKHIASLSDATEEDEELLGHLLSAAAKVAKDLGIAEDGYR 81 (104)
T ss_pred CcceecccCCCccCEEEECCCEEEEECCCCCCCCEEEEEecceeCChHHcccccHHHHHHHHHHHHHHHHHhCCCCCCEE
Confidence 5689998888887788899999999999999999999999995444334433 233333 33334444 57999
Q ss_pred EEEec-CCCCCCCCeeEEEEee
Q 040147 207 LGYNS-LGAFATINHLHFQAYY 227 (412)
Q Consensus 207 vfyNs-~gA~ASv~HlHfq~~~ 227 (412)
+++|. ..||+++.|+|+|+++
T Consensus 82 ~~~~~g~~~g~~v~H~HiHii~ 103 (104)
T cd01276 82 LVINCGKDGGQEVFHLHLHLLG 103 (104)
T ss_pred EEEeCCCCCCCceeEEEEEEeC
Confidence 99998 8888999999999975
No 9
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=99.32 E-value=5.9e-12 Score=104.71 Aligned_cols=85 Identities=20% Similarity=0.214 Sum_probs=67.7
Q ss_pred ccccEEEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHHHc--------CCCCeEEEEec-CCC
Q 040147 144 EEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEA--------ADPFFRLGYNS-LGA 214 (412)
Q Consensus 144 ~Eil~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~~~--------~~~gfrvfyNs-~gA 214 (412)
+|++-.+.++++.+++++|.+|..+||+||||+++...-..|+++.+..++.+++.+ +..||++..|. ..+
T Consensus 2 ~e~~~~vv~e~~~~~~~~~~~p~~~gh~LVipk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~g~~~ 81 (98)
T PF01230_consen 2 GEIPARVVYEDDHFVAFLDIFPISPGHLLVIPKRHVESLSDLPPEERAELMQLVQKVAKALKEAFGPDGYNVIINNGPAA 81 (98)
T ss_dssp TSSHCEEEEE-SSEEEEEESSTSSTTEEEEEESSTGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESGGG
T ss_pred CCCCeeEEEECCCEEEEEcCCCCCCeEEEEEecccccchhcCCHHHHHHHHHHHHHHHHHHhcccccceeeccccchhhh
Confidence 466777788899999999999999999999999966666667766666665555432 46799999988 889
Q ss_pred CCCCCeeEEEEeeC
Q 040147 215 FATINHLHFQAYYL 228 (412)
Q Consensus 215 ~ASv~HlHfq~~~~ 228 (412)
|++++|+|+|++++
T Consensus 82 gq~v~HlH~HviPR 95 (98)
T PF01230_consen 82 GQSVPHLHFHVIPR 95 (98)
T ss_dssp TSSSSS-EEEEEEE
T ss_pred cCccCEEEEEEecc
Confidence 99999999999986
No 10
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=99.32 E-value=1.2e-11 Score=107.63 Aligned_cols=93 Identities=17% Similarity=0.129 Sum_probs=75.9
Q ss_pred CCCCCCCccccc-EEEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHHH--------cCCCCeE
Q 040147 136 FNFTKIGQEEML-FRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKE--------AADPFFR 206 (412)
Q Consensus 136 fnF~ki~~~Eil-~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~~--------~~~~gfr 206 (412)
+.||++..+|.. -.+.++++.++++++.+|..+||+||||+++......|+++++..+..+++. .+..||+
T Consensus 1 C~fC~i~~~e~~~~~iv~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~~~~~v~~~l~~~~~~~~~n 80 (126)
T cd01275 1 CVFCDIPIKPDEDNLVFYRTKHSFAVVNLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFKLVQLAMKALKVVYKPDGFN 80 (126)
T ss_pred CccccCccCCCccccEEEeCCCEEEEEcCCCCCCCcEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 358898877765 4567789999999999999999999999997666677888766666555542 2356999
Q ss_pred EEEec-CCCCCCCCeeEEEEeeC
Q 040147 207 LGYNS-LGAFATINHLHFQAYYL 228 (412)
Q Consensus 207 vfyNs-~gA~ASv~HlHfq~~~~ 228 (412)
+++|. ..+|+++.|+|+|++|+
T Consensus 81 ~~~~~g~~~gq~v~H~HiHiiPR 103 (126)
T cd01275 81 IGINDGKAGGGIVPHVHIHIVPR 103 (126)
T ss_pred EEEeCCcccCCCcCEEEEEEeCC
Confidence 99999 77889999999999987
No 11
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=99.29 E-value=2e-11 Score=101.70 Aligned_cols=93 Identities=19% Similarity=0.156 Sum_probs=76.5
Q ss_pred CCCCCCCcccccEEEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHHHc--------CCCCeEE
Q 040147 136 FNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEA--------ADPFFRL 207 (412)
Q Consensus 136 fnF~ki~~~Eil~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~~~--------~~~gfrv 207 (412)
+.||.+..+|....+.++++.++++++.+|..|||++|+|+++......|+.+++..+..+++.+ +..||++
T Consensus 2 C~~c~ii~~e~~~~iv~e~~~~~a~~~~~~~~pg~~lI~Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~n~ 81 (103)
T cd01277 2 CIFCKIIAGEIPSYKVYEDDHVLAFLDINPASKGHTLVIPKKHYENLLDLDPEELAELILAAKKVARALKKALKADGLNI 81 (103)
T ss_pred CccccccCCCCCCCEEEeCCCEEEEECCCCCCCeeEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceEE
Confidence 56889988887777788899999999999999999999999977767778887666665554422 4569999
Q ss_pred EEec-CCCCCCCCeeEEEEeeC
Q 040147 208 GYNS-LGAFATINHLHFQAYYL 228 (412)
Q Consensus 208 fyNs-~gA~ASv~HlHfq~~~~ 228 (412)
++|. ..+|+++.|+|+|++|+
T Consensus 82 ~~~~~~~~g~~~~H~HiHiiPR 103 (103)
T cd01277 82 LQNNGRAAGQVVFHVHVHVIPR 103 (103)
T ss_pred EEeCCcccCcccCEEEEEEccC
Confidence 9998 66778899999999874
No 12
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=99.27 E-value=1.9e-11 Score=98.22 Aligned_cols=76 Identities=21% Similarity=0.251 Sum_probs=61.2
Q ss_pred cCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHH----H----cCCCCeEEEEec-CCCCCCCCeeE
Q 040147 152 DSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAK----E----AADPFFRLGYNS-LGAFATINHLH 222 (412)
Q Consensus 152 ~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~----~----~~~~gfrvfyNs-~gA~ASv~HlH 222 (412)
++++.+++++|.+|..+||+|+||+++......|+.+.+..+..+++ . .+..+|++++|. ..+|+|+.|+|
T Consensus 2 ~e~~~~~a~~~~~p~~~gh~lIipk~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~~v~H~H 81 (86)
T cd00468 2 PDDEHSFAFVNLKPAAPGHVLVCPKRHVETLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQSVPHVH 81 (86)
T ss_pred eecCcEEEEECCCCCCCCcEEEeCchhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCccCCCcCCEEE
Confidence 46889999999999999999999999766666677765555554443 2 245689999999 78889999999
Q ss_pred EEEee
Q 040147 223 FQAYY 227 (412)
Q Consensus 223 fq~~~ 227 (412)
+|++|
T Consensus 82 ~hiiP 86 (86)
T cd00468 82 LHVLP 86 (86)
T ss_pred EEeCC
Confidence 99975
No 13
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=99.26 E-value=3.1e-11 Score=101.27 Aligned_cols=91 Identities=19% Similarity=0.238 Sum_probs=69.1
Q ss_pred CCCCCCCcccc--cEEEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHH-------H---cCCC
Q 040147 136 FNFTKIGQEEM--LFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAK-------E---AADP 203 (412)
Q Consensus 136 fnF~ki~~~Ei--l~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~-------~---~~~~ 203 (412)
+.||++..+|. .-.+.++++.++++.+.+|..+||+|+||+++......++.+++..+.++++ . .+..
T Consensus 2 c~fc~i~~~e~~~~~~iv~~~~~~~a~~~~~p~~~~h~lIiPk~h~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 81 (104)
T cd01278 2 CHFCDIAKRRDPDPEDQVYEDDRVVVFKDIYPKARHHYLVIPKEHIASLKALTKEDVPLLEHMETVGREKLLRSDNTDPS 81 (104)
T ss_pred CccccCccCCCCCCccEEEeCCCEEEEECCCCCCCceEEEEecCCCCChHHCCHhHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 46888877776 4667788999999999999999999999999766666677664444433321 2 2456
Q ss_pred CeEEEEecCCCCCCCCeeEEEEee
Q 040147 204 FFRLGYNSLGAFATINHLHFQAYY 227 (412)
Q Consensus 204 gfrvfyNs~gA~ASv~HlHfq~~~ 227 (412)
||++++|..-. +||+|+|+|++.
T Consensus 82 ~~n~g~h~~p~-~~v~H~H~Hvi~ 104 (104)
T cd01278 82 EFRFGFHAPPF-TSVSHLHLHVIA 104 (104)
T ss_pred CeEEEeCCCCC-cCeeeEEEEeeC
Confidence 89999998333 789999999863
No 14
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=98.69 E-value=1.8e-08 Score=87.13 Aligned_cols=91 Identities=23% Similarity=0.193 Sum_probs=62.2
Q ss_pred CCCCCCcccccEEEecCCCcEEEEEcCCCCCCceEEEeecc-ccCcccccCHHHHHHH-------HHHHHHcC-----CC
Q 040147 137 NFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRV-LDCLPQRIDHESFLLA-------LYVAKEAA-----DP 203 (412)
Q Consensus 137 nF~ki~~~Eil~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~-~~~~pq~l~~~~l~~~-------~~la~~~~-----~~ 203 (412)
.||.+..++.+..+.++++.++++-+.+|.++.|+|+||+. +......|+.+.+..+ .+++.+.. ..
T Consensus 3 if~~i~~~~~~~~vly~d~~~v~~~D~~P~a~~H~LviPk~~~i~sl~~L~~~~~~lL~~m~~~~~~~~~~~~~~~~~~~ 82 (116)
T PF11969_consen 3 IFCIIIRGEEPERVLYEDDDFVVFKDIYPKAPVHLLVIPKDPHIRSLRDLTPEHLPLLERMREVARELLKEEYPGDLDSD 82 (116)
T ss_dssp HHHHHTTSSSGGGESEEETSEEEEE-TT-SCCEEEEEEESSSS-SSGGG--GGGHHHHHHHHHHHHHHHHHHH-TT-EGG
T ss_pred cceEeEcCCCCCcEEEEeCCEEEeeCCCCCcCcEEEEEeecCCCCChHHcCHHHHHHHHHHHHHHHHHHHHhcccccchh
Confidence 46777666666666677899999999999999999999999 6666666765433333 33333222 34
Q ss_pred CeEEEEecCCCCCCCCeeEEEEeeCCC
Q 040147 204 FFRLGYNSLGAFATINHLHFQAYYLPL 230 (412)
Q Consensus 204 gfrvfyNs~gA~ASv~HlHfq~~~~~~ 230 (412)
.+++||...- |++|+|+|++..+.
T Consensus 83 ~~~~gfH~~P---S~~HLHlHvi~~~~ 106 (116)
T PF11969_consen 83 DIRLGFHYPP---SVYHLHLHVISPDF 106 (116)
T ss_dssp GEEEEEESS----SSSS-EEEEEETTS
T ss_pred hhcccccCCC---CcceEEEEEccCCC
Confidence 7999999843 89999999998754
No 15
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=98.62 E-value=6.4e-08 Score=98.46 Aligned_cols=94 Identities=13% Similarity=0.004 Sum_probs=73.6
Q ss_pred CCCCCCCCcccccE--EEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHHHc---------CCC
Q 040147 135 KFNFTKIGQEEMLF--RLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEA---------ADP 203 (412)
Q Consensus 135 kfnF~ki~~~Eil~--~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~~~---------~~~ 203 (412)
.+.||++..+|+.. .++++++.++++++.+|..|||+||||+++...-..|+.+.+..+.++++.+ .+.
T Consensus 195 ~Clfcdii~~E~~~~~RiV~End~fvAf~p~~p~~P~h~lIiPKrH~~~~~dl~dee~~~La~~lk~v~~~l~~~~~~~~ 274 (346)
T PRK11720 195 SPLLVDYVQRELADGERIVVETEHWLAVVPYWAAWPFETLLLPKAHVLRLTDLTDAQRDDLALALKKLTSRYDNLFQCSF 274 (346)
T ss_pred CeEHHHHHHhhhhcCCeEEEECCCEEEEeccccCCCCeEEEecccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 47899998888874 6788999999999999999999999999976666667877666655544422 244
Q ss_pred CeEEEEec-C--CCCCCCCeeEEEEeeC
Q 040147 204 FFRLGYNS-L--GAFATINHLHFQAYYL 228 (412)
Q Consensus 204 gfrvfyNs-~--gA~ASv~HlHfq~~~~ 228 (412)
.|++++|. . ++++++.|+|+|++|.
T Consensus 275 pyn~~~h~~p~~~~~~~~~H~HihiiPr 302 (346)
T PRK11720 275 PYSMGWHGAPFNGEENDHWQLHAHFYPP 302 (346)
T ss_pred CCceeEEecccCCCCCeeEEEEEEEeCC
Confidence 68999998 4 3445678999999875
No 16
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only]
Probab=98.61 E-value=1.6e-07 Score=82.92 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=59.2
Q ss_pred cCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHHHc--------CCCCeEEEEec-CCCCCCCCeeE
Q 040147 152 DSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEA--------ADPFFRLGYNS-LGAFATINHLH 222 (412)
Q Consensus 152 ~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~~~--------~~~gfrvfyNs-~gA~ASv~HlH 222 (412)
+......+++|.-|+.|||+|++|.+....-..||.++...++..++.. +...+.+..-. ..||+||+|.|
T Consensus 21 ykT~~sfafvNlkPvvpgHVLv~P~R~vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~ti~iQDG~~AGQTVpHvH 100 (150)
T KOG3379|consen 21 YKTKHSFAFVNLKPVVPGHVLVSPLRVVPRLTDLTAAETADLFTTVQKVQRVLEKHYNATSLTIAIQDGPEAGQTVPHVH 100 (150)
T ss_pred EeccceEEEEeccccccceEEEeccccccccccCCcHHHHHHHHHHHHHHHHHHHHhcccceEEEeccccccCcccceeE
Confidence 3467789999999999999999999966666667776565555544432 23346665555 99999999999
Q ss_pred EEEeeCC
Q 040147 223 FQAYYLP 229 (412)
Q Consensus 223 fq~~~~~ 229 (412)
+|++|+-
T Consensus 101 vHIlPR~ 107 (150)
T KOG3379|consen 101 VHILPRK 107 (150)
T ss_pred EEEcccc
Confidence 9999873
No 17
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=98.56 E-value=1.6e-07 Score=95.71 Aligned_cols=94 Identities=12% Similarity=-0.005 Sum_probs=72.1
Q ss_pred CCCCCCCCcccc--cEEEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHHHc---------CCC
Q 040147 135 KFNFTKIGQEEM--LFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEA---------ADP 203 (412)
Q Consensus 135 kfnF~ki~~~Ei--l~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~~~---------~~~ 203 (412)
.+.||++..+|+ .-.+.++++.++++++.+|+.|||+||||+++...-..|+.+.+..+.++++.+ .++
T Consensus 195 ~clfcdIi~~E~~~~~riV~End~fvAf~p~~p~~Pgh~lIiPKrH~~~~~dl~d~e~~~La~~lk~v~~~l~~~~~~~~ 274 (347)
T TIGR00209 195 SPMLVDYVKRELADKSRTVVETEHWIAVVPYWAIWPFETLLLPKAHVLRITDLTDAQRSDLALILKKLTSKYDNLFETSF 274 (347)
T ss_pred CccHHHHHHhHhhcCCeEEEECCCEEEEeccCCCCCCeEEEeeccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 488999988887 357788999999999999999999999999976666667777666666555422 244
Q ss_pred CeEEEEec-CCCCCCCC--eeEEEEeeC
Q 040147 204 FFRLGYNS-LGAFATIN--HLHFQAYYL 228 (412)
Q Consensus 204 gfrvfyNs-~gA~ASv~--HlHfq~~~~ 228 (412)
+|++++|. ..++++++ |+|+|++|.
T Consensus 275 pYn~~~h~~p~~~~~~~~~H~HihiiPr 302 (347)
T TIGR00209 275 PYSMGWHGAPFNGEENQHWQLHAHFYPP 302 (347)
T ss_pred CcceeEEecccCCCCCcEEEEEEEEeCC
Confidence 79999999 55555454 588888765
No 18
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=98.42 E-value=5.4e-07 Score=91.00 Aligned_cols=94 Identities=12% Similarity=-0.024 Sum_probs=73.5
Q ss_pred CCCCCCCCccccc--EEEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHHHc--------C-CC
Q 040147 135 KFNFTKIGQEEML--FRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEA--------A-DP 203 (412)
Q Consensus 135 kfnF~ki~~~Eil--~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~~~--------~-~~ 203 (412)
.+.||++..+|+. -.+.++++.+++++..+|..|+|++|||+++......|+.+....+.++++.+ + +.
T Consensus 185 ~clfcdii~~E~~~~~riV~end~~va~~p~~~~~P~e~lIiPKrH~~~~~dl~~~e~~~La~~l~~v~~~l~~~~~~~~ 264 (329)
T cd00608 185 RCLLCDYLKLELESKERIVVENEHFVAVVPFWARWPFEVHILPKRHVSRFTDLTDEEREDLAEILKRLLARYDNLFNCSF 264 (329)
T ss_pred CccHHHHHHhhhhcCCeEEEeCCCEEEEEecCCCCCcEEEEecCCCcCChhHCCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4789999888876 66788899999999999999999999999976666667777565555444422 3 56
Q ss_pred CeEEEEec-CCC----CCCCCeeEEEEeeC
Q 040147 204 FFRLGYNS-LGA----FATINHLHFQAYYL 228 (412)
Q Consensus 204 gfrvfyNs-~gA----~ASv~HlHfq~~~~ 228 (412)
+|++++|+ +.+ +.++.|+|+|++++
T Consensus 265 pyn~~~h~~P~~~~~~~~~~~H~Hihi~Pr 294 (329)
T cd00608 265 PYSMGWHQAPTGGKELENWYYHWHFEIPPR 294 (329)
T ss_pred CeEEEEeccCCCCCcCCcceEEEEEEeCCC
Confidence 89999988 333 45789999999876
No 19
>PLN02643 ADP-glucose phosphorylase
Probab=98.37 E-value=1.2e-06 Score=88.97 Aligned_cols=91 Identities=16% Similarity=0.097 Sum_probs=68.6
Q ss_pred CCCCCCCCcccccEEEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHH--------HcCCCCeE
Q 040147 135 KFNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAK--------EAADPFFR 206 (412)
Q Consensus 135 kfnF~ki~~~Eil~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~--------~~~~~gfr 206 (412)
.+.||++..+|+ ++++++.++++++.+|..|+|++|||+++......|+.+.+..+.++++ ..+.++|+
T Consensus 199 ~Clfcdii~~E~---iV~en~~f~Af~p~ap~~P~evlIiPKrH~~~~~dl~~~e~~~La~ilk~v~~~l~~~~~~~pyN 275 (336)
T PLN02643 199 KCSLCEVVKKDL---LIDESSHFVSIAPFAATFPFEIWIIPRDHSSNFHEIDDDKAVDLGGLLKLMLQKISKQLNDPPYN 275 (336)
T ss_pred CCcHHHHHhCcc---EEEeCCCEEEEeccccCCCCEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCce
Confidence 478999988888 6778999999999999999999999999776766788775555554444 22455899
Q ss_pred EEEec-CC--CCCCCCeeE--EEEeeC
Q 040147 207 LGYNS-LG--AFATINHLH--FQAYYL 228 (412)
Q Consensus 207 vfyNs-~g--A~ASv~HlH--fq~~~~ 228 (412)
++.|. .. +++.+.|.| +|+++.
T Consensus 276 ~~~~~~P~~~~~~~~~~~H~hihi~PR 302 (336)
T PLN02643 276 YMIQTSPLGVEESNLPYTHWFLQIVPQ 302 (336)
T ss_pred eeeecCCCccccCcccceEEEEEEecC
Confidence 99999 33 344455555 477764
No 20
>TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase, family 2. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=97.91 E-value=0.00053 Score=71.86 Aligned_cols=184 Identities=15% Similarity=0.192 Sum_probs=121.6
Q ss_pred cCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHHHcCCCCeEEEEec--CCCCCCC-CeeEEEEeeC
Q 040147 152 DSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEAADPFFRLGYNS--LGAFATI-NHLHFQAYYL 228 (412)
Q Consensus 152 ~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~~~~~~gfrvfyNs--~gA~ASv-~HlHfq~~~~ 228 (412)
..++....=.-+|.+...|+.+.-. +|.|-.++...|.-++++...+ |+|.+|-|. +--|+|| .|=|||...-
T Consensus 199 L~ge~W~fQYSPY~YynEHcIvl~~--~H~PMkI~~~tF~~Ll~fv~~f--PhYFiGSNADLPIVGGSILsHdHyQgG~h 274 (489)
T TIGR01239 199 LEDEQWGFQFSPYAYFPEHSIVLKG--KHEPMEISKKTFERLLSFLGKF--PHYFIGSNADLPIVGGSILSHDHYQGGRH 274 (489)
T ss_pred eCCccceeeccchheecceeEEecC--ccCCcEecHHHHHHHHHHHHhC--CccccccCCCCCcccccccccccccCCCc
Confidence 3466677777888899999955544 5999999999999999999887 577799999 6667778 8999999865
Q ss_pred CCCCCCCCCCcccccccccccCCcceEEeccCCcceeEEEecCC--cHHHHHHHHHHHHHhh---------hCCCCCeEE
Q 040147 229 PLPFPVEKAPTSRIVTVKGHQDTQVIISQLLNYPVRGLVFEVGK--SLRDLSHAVASSCICL---------QNNNIPFNV 297 (412)
Q Consensus 229 ~~~lPiE~~~~~~l~~~~~~~~~g~~i~~l~~yP~~~fvf~~~~--~~~~L~~~l~~~l~~L---------~~~~~PyNL 297 (412)
.||+++|+...-... ..-+++.. .+.+||+..+.+.+.+ .+.+++..+.+..... ....+|||-
T Consensus 275 --~FpM~kA~i~~~f~~--~~~p~V~a-givkWPmSviRL~~~~~~~l~~~a~~Il~~Wr~YsDe~~~I~A~t~g~pHnT 349 (489)
T TIGR01239 275 --DFPMARAEAEEVYEL--NDYPDVSA-GIVKWPMSVLRLQGEDPGELAEAADHIFRTWQTYSDEKAGIAAYSDGTPHHT 349 (489)
T ss_pred --ccccccCCcceEEec--CCCCcceE-EEEeccceEEEeccCCHHHHHHHHHHHHHHHhCCCccccceEecCCCCcccc
Confidence 589998887544311 11234433 3679999888888775 3344455554443211 234579987
Q ss_pred E--EEc--C-CeEEEEEecchHhhhhcccccccccc--------cccccchhcccceeeecCh
Q 040147 298 L--ISD--C-GRRIILFPQCYAEKQALGEVSQELLD--------TQVNPAAWEISGHIVLKRR 347 (412)
Q Consensus 298 l--itr--~-g~rv~l~PR~~~~kq~~ge~~~~lL~--------~~~spaa~ElaG~llvk~~ 347 (412)
+ |.| + .+-+-|+.|.... -.+-+..+.. -.=|.|..|..|+-++|-+
T Consensus 350 ITPIaR~~~~~yElDLVLRnN~T---see~P~GIFHPH~evhHIKKENIGLIEVMGLAILP~R 409 (489)
T TIGR01239 350 VTPIARRRDGKYELDLVLRDNQT---SEEYPDGIFHPHQDVHHIKKENIGLIEVMGLAILPGR 409 (489)
T ss_pred CCceEEecCCceEEEEEeecCCC---ccccCCccccCcHhhhhhhhhhhhHHhhhhhhcCCHH
Confidence 5 222 2 2678888983211 0011111100 0127788999999888854
No 21
>PRK05270 galactose-1-phosphate uridylyltransferase; Provisional
Probab=97.79 E-value=0.00034 Score=73.46 Aligned_cols=185 Identities=17% Similarity=0.202 Sum_probs=123.0
Q ss_pred cCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHHHcCCCCeEEEEec--CCCCCCC-CeeEEEEeeC
Q 040147 152 DSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEAADPFFRLGYNS--LGAFATI-NHLHFQAYYL 228 (412)
Q Consensus 152 ~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~~~~~~gfrvfyNs--~gA~ASv-~HlHfq~~~~ 228 (412)
..++....=.-+|.+...|+.+.-. +|.|-.++...|.-++++...+ |+|.+|-|. +--|+|| .|=|||...-
T Consensus 202 L~ge~W~fQYSPY~YynEH~Ivl~~--~H~PMkI~~~tF~rLL~fv~~f--PhYFiGSNADLPIVGGSILsHdHyQgG~h 277 (493)
T PRK05270 202 LGGESWGFQYSPYAYFNEHCIVLSE--KHRPMKISRKTFERLLDFVEQF--PHYFIGSNADLPIVGGSILSHDHYQGGRH 277 (493)
T ss_pred eCCceeeeecCchheecceeEEecC--ccCccEecHHHHHHHHHHHHhC--CccccccCCCCCcccccccccccccCCCc
Confidence 3466677777888999999955544 5999999999999999999987 577799999 6666677 9999999865
Q ss_pred CCCCCCCCCCcccccccccccCCcceEEeccCCcceeEEEecCC--cHHHHHHHHHHHHHhh---------hCCCCCeEE
Q 040147 229 PLPFPVEKAPTSRIVTVKGHQDTQVIISQLLNYPVRGLVFEVGK--SLRDLSHAVASSCICL---------QNNNIPFNV 297 (412)
Q Consensus 229 ~~~lPiE~~~~~~l~~~~~~~~~g~~i~~l~~yP~~~fvf~~~~--~~~~L~~~l~~~l~~L---------~~~~~PyNL 297 (412)
.||+++|+...-.. ....+++.. .+.+||+..+.+.+.+ .+.+++..+.+..... ....+|||-
T Consensus 278 --~FpM~kA~i~~~f~--~~~~p~V~a-givkWPmSviRL~~~~~~~l~~~a~~Il~~Wr~YsDe~~~I~a~tdg~pHnT 352 (493)
T PRK05270 278 --TFPMAKAPIEEEFT--LAGYPDVKA-GIVKWPMSVIRLTSKNKDELIDAADKILEAWRGYSDESVDILAYTDGTPHNT 352 (493)
T ss_pred --ccccccCccceEEe--cCCCCcceE-EEeeCcceEEEeecCCHHHHHHHHHHHHHHHhCCCccccceeecCCCCcccC
Confidence 58999888754432 122344433 4789999988888775 3344445554442211 233578887
Q ss_pred E--EEc--C-CeEEEEEecchHhhhhcccccccccc--------cccccchhcccceeeecChh
Q 040147 298 L--ISD--C-GRRIILFPQCYAEKQALGEVSQELLD--------TQVNPAAWEISGHIVLKRRK 348 (412)
Q Consensus 298 l--itr--~-g~rv~l~PR~~~~kq~~ge~~~~lL~--------~~~spaa~ElaG~llvk~~e 348 (412)
+ |.| + .+-+-|+.|.-.. -.+-+..+.. -.=|.|..|..|+-++|-+-
T Consensus 353 ITPIaR~~~~~yElDLVLRnN~T---see~P~GIFHPH~e~hHIKKENIGLIEVMGLAILP~RL 413 (493)
T PRK05270 353 ITPIARRRGGKYELDLVLRNNRT---SEEHPDGIFHPHPEVHHIKKENIGLIEVMGLAILPGRL 413 (493)
T ss_pred CCceEEecCCeeEEEEEeecCCC---ccccCCccccCchhhhccccccccHHhhhhhhcCcHHH
Confidence 5 222 2 3678888883211 0011111100 01278889999999888753
No 22
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only]
Probab=97.79 E-value=5.9e-05 Score=67.06 Aligned_cols=91 Identities=18% Similarity=0.235 Sum_probs=65.4
Q ss_pred CCCCCCC-----cccccEEEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHH-------HHHc---
Q 040147 136 FNFTKIG-----QEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYV-------AKEA--- 200 (412)
Q Consensus 136 fnF~ki~-----~~Eil~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~l-------a~~~--- 200 (412)
+-||.+. ..|++- .+++.++++-+++|-+..|.|+||+.+...+..|+.+....+-++ .++.
T Consensus 33 C~FCDia~r~~~~~ell~---~En~~~V~fkDikPaA~~HYLvipK~Hi~~~~~L~k~~V~Lve~m~~~G~~~l~r~~~t 109 (166)
T KOG4359|consen 33 CVFCDIAGRQDPGTELLH---CENEDLVCFKDIKPAATHHYLVVPKKHIGNCRTLRKDQVELVENMVTVGKTILERNNFT 109 (166)
T ss_pred eEEEEeecccCCCCceeE---ecCCcEEEEecCCccccceEEEechHHcCChhhcchhhHHHHHHHHHHHHHHHHHhccC
Confidence 4566662 234443 568999999999999999999999999988888987655444322 2222
Q ss_pred CCCCeEEEEecCCCCCCCCeeEEEEeeCCC
Q 040147 201 ADPFFRLGYNSLGAFATINHLHFQAYYLPL 230 (412)
Q Consensus 201 ~~~gfrvfyNs~gA~ASv~HlHfq~~~~~~ 230 (412)
+..-.|+||..+. .-||.|+|+|+++-..
T Consensus 110 d~~~~r~GFHLPP-f~SV~HLHlH~I~P~~ 138 (166)
T KOG4359|consen 110 DFTNVRMGFHLPP-FCSVSHLHLHVIAPVD 138 (166)
T ss_pred CchheeEeccCCC-cceeeeeeEeeecchH
Confidence 2446789998833 3479999999987543
No 23
>COG4468 GalT Galactose-1-phosphate uridyltransferase [Carbohydrate transport and metabolism]
Probab=97.24 E-value=0.0015 Score=66.92 Aligned_cols=183 Identities=17% Similarity=0.196 Sum_probs=114.7
Q ss_pred CCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHHHcCCCCeEEEEec--CCCCCCC-CeeEEEEeeCCC
Q 040147 154 KSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEAADPFFRLGYNS--LGAFATI-NHLHFQAYYLPL 230 (412)
Q Consensus 154 ~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~~~~~~gfrvfyNs--~gA~ASv-~HlHfq~~~~~~ 230 (412)
++....=.-+|-+...|+++. .. +|.|-.++...|.-++.+...+ |+|.+|-|. +--|+|| .|=|+|....
T Consensus 206 ~e~W~fQySPY~YynEH~I~l-~~-eH~pM~Is~~tFerlL~f~dqf--PhYfiGSNADLPIVGGSILsHDHyQgG~h-- 279 (503)
T COG4468 206 GEQWGFQYSPYVYYNEHCIIL-NG-EHRPMKISRKTFERLLSFLDQF--PHYFIGSNADLPIVGGSILSHDHYQGGRH-- 279 (503)
T ss_pred CceeeEeeccceeecceeEEe-cC-CcccceecHHHHHHHHHHHHhC--CcccccCCCCCCcccceeccccccccccc--
Confidence 555556666777788999555 44 6999999999999999998886 688899999 5555667 8999999876
Q ss_pred CCCCCCCCcccccccccccCCcceEEeccCCcceeEEEecCC--cHHHHHHHHHHHHHhh---------hCCCCCeEEEE
Q 040147 231 PFPVEKAPTSRIVTVKGHQDTQVIISQLLNYPVRGLVFEVGK--SLRDLSHAVASSCICL---------QNNNIPFNVLI 299 (412)
Q Consensus 231 ~lPiE~~~~~~l~~~~~~~~~g~~i~~l~~yP~~~fvf~~~~--~~~~L~~~l~~~l~~L---------~~~~~PyNLli 299 (412)
.||+++++..+-.. ...-+++... +..||+..+.+.+.+ .+.++++.+++....- ....+|||-+-
T Consensus 280 ~FpMakA~~eke~~--~~~fp~V~aG-iVKWPMSVlRL~s~nk~~L~~lAd~il~~Wr~YSDe~~~I~a~T~dtpHnTIT 356 (503)
T COG4468 280 EFPMAKAELEKEFS--FKGFPDVSAG-IVKWPMSVLRLQSKNKVELIKLADKILKKWREYSDEEVQILAYTGDTPHNTIT 356 (503)
T ss_pred cccccccchhheee--ecCCCccccc-eeecchhheeeccCCHHHHHHHHHHHHHHHHHhcchhcceeeccCCCCCcccc
Confidence 57888888754432 1122333222 567888777777664 4455666665543222 13357999752
Q ss_pred --Ec--CC-eEEEEEecchHhhhhccccccccc--------ccccccchhcccceeeecChh
Q 040147 300 --SD--CG-RRIILFPQCYAEKQALGEVSQELL--------DTQVNPAAWEISGHIVLKRRK 348 (412)
Q Consensus 300 --tr--~g-~rv~l~PR~~~~kq~~ge~~~~lL--------~~~~spaa~ElaG~llvk~~e 348 (412)
.| +| +-+=|+-|-.. .-.+-+..+. ..-=|.|..|.-|+-++|-+-
T Consensus 357 PIARkR~~~yELDlVLRnNr---T~e~yPdGIFHPH~evhhIKKENIGLIEVMGLAiLP~RL 415 (503)
T COG4468 357 PIARKRGGLYELDLVLRNNR---TSEEYPDGIFHPHQEVHHIKKENIGLIEVMGLAILPGRL 415 (503)
T ss_pred hhhhhcCCeeEEEEEEecCC---ccccCCCcccCCcHHhhhhhhhccchheeechhhCChhh
Confidence 22 33 34555555100 0001111110 001267889999998888754
No 24
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=97.19 E-value=0.0047 Score=54.05 Aligned_cols=95 Identities=16% Similarity=0.143 Sum_probs=59.8
Q ss_pred CcCCCCCCCCCcc-cccEEEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHHH------cCCCC
Q 040147 132 DENKFNFTKIGQE-EMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKE------AADPF 204 (412)
Q Consensus 132 ~~~kfnF~ki~~~-Eil~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~~------~~~~g 204 (412)
....+.||=-.+. |.-..+.. ++...+.+-+-|+.+||+||||-.|......++.+.+.++.+.-+. ..+.+
T Consensus 9 ~~~~C~fCl~n~~~~khliisi-G~~~YLalpkg~L~~gH~lIvPi~H~~s~~~~de~~~~Ei~~f~~~L~~mf~~~~~~ 87 (121)
T PF04677_consen 9 APDNCWFCLSNPNVEKHLIISI-GDEVYLALPKGPLVPGHCLIVPIQHVPSLTELDEEVWEEIRNFQKSLRKMFASQGKD 87 (121)
T ss_pred CCCCCCCccCCCCccceEEEEE-cCcEEEEeCCCCccCCEEEEEecceecccccCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3455667644322 22232333 5556666666999999999999996555555677766666543321 12445
Q ss_pred eEEEEecCCCCCCCCeeEEEEeeCCC
Q 040147 205 FRLGYNSLGAFATINHLHFQAYYLPL 230 (412)
Q Consensus 205 frvfyNs~gA~ASv~HlHfq~~~~~~ 230 (412)
. |||-.. ..+..|.|+|+++.+.
T Consensus 88 v-vf~E~~--~~~~~H~~iq~vPvp~ 110 (121)
T PF04677_consen 88 V-VFFERV--RKRNPHTHIQCVPVPK 110 (121)
T ss_pred E-EEEEEe--CCCCcEEEEEEEEcCH
Confidence 5 788764 2235699999998754
No 25
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=97.04 E-value=0.031 Score=56.67 Aligned_cols=122 Identities=15% Similarity=0.047 Sum_probs=66.7
Q ss_pred EEEEccccccccccchhhhccc--ccccCcCCCCCCCCCcccccEEEecCCCcEEEEEcCCCCCC---------------
Q 040147 106 IAQLNEGRHLKKRATEFRIDQV--LQSFDENKFNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEY--------------- 168 (412)
Q Consensus 106 vvQlNp~R~~kkrpt~~~id~~--~~pf~~~kfnF~ki~~~Eil~~~~~~~~~~~vllN~~Pi~~--------------- 168 (412)
.|=+.|+|. |||..+.-.+. .+..+ ..+.||+-..+. +-.....+=...|+-|+||...
T Consensus 11 wvi~a~~R~--~Rp~~~~~~~~~~~~~~~-~~CPfCpg~~~~-~~~~~~~~w~~~v~~N~fPal~~~~~~~~~~~~~l~~ 86 (329)
T cd00608 11 WVLVSPHRA--KRPWQGQQEAPKKLPEYD-PDCPLCPGNERA-DTGEQNPDYDVRVFENDFPALKPDAPAPEDSDDGLFR 86 (329)
T ss_pred EEEEcCccc--CCCCCCcccccccccCCC-CCCCcCCCCCCC-CCCCCCCCCeEEEECCCCccccCCCCCCcccCCcccc
Confidence 444678777 36654321100 01111 226666543211 1111112234789999999883
Q ss_pred ------ceEEEeeccccCc--ccccCHHHHHHHHHHHH----Hc-C---CCCeEEEEec-CCCCCCCCeeEEEEeeCCCC
Q 040147 169 ------GHVLLIPRVLDCL--PQRIDHESFLLALYVAK----EA-A---DPFFRLGYNS-LGAFATINHLHFQAYYLPLP 231 (412)
Q Consensus 169 ------~H~LlVP~~~~~~--pq~l~~~~l~~~~~la~----~~-~---~~gfrvfyNs-~gA~ASv~HlHfq~~~~~~~ 231 (412)
.|-.|| ..-+|. ...++.+.+..++.+.. ++ . -...-+|-|- ..||||+.|-|.|++-.+.
T Consensus 87 ~~~~~G~~eVii-~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~~~yv~if~N~G~~aGaSl~HpH~Qi~a~~~- 164 (329)
T cd00608 87 TAPARGRCEVIC-FSPDHNLTLAEMSVAEIREVVEAWAERTRELGKNPRIKYVQIFENKGAEMGASLPHPHGQIWALPF- 164 (329)
T ss_pred cCCcceeEEEEE-ECCcccCChhhCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeecCcccccCCCCCCeeeeeCCc-
Confidence 234333 222344 34466665655554333 22 1 2255678888 9999999999999998876
Q ss_pred CC
Q 040147 232 FP 233 (412)
Q Consensus 232 lP 233 (412)
+|
T Consensus 165 vp 166 (329)
T cd00608 165 LP 166 (329)
T ss_pred CC
Confidence 44
No 26
>PLN02643 ADP-glucose phosphorylase
Probab=96.89 E-value=0.17 Score=51.65 Aligned_cols=76 Identities=22% Similarity=0.181 Sum_probs=47.6
Q ss_pred cEEEEEcCCCCCCc------------------------eEEEeeccccCcc--cccCHHHHHHHHHHHH----Hc-CC--
Q 040147 156 PSVVAINVSPIEYG------------------------HVLLIPRVLDCLP--QRIDHESFLLALYVAK----EA-AD-- 202 (412)
Q Consensus 156 ~~~vllN~~Pi~~~------------------------H~LlVP~~~~~~p--q~l~~~~l~~~~~la~----~~-~~-- 202 (412)
...|+-|+||.... |-.||-.. +|.. ..|+.+.+..++++.+ .+ .+
T Consensus 70 ~vrv~~N~fPal~~~~~~~~~~~~~~~~~~~~~~~~G~~eVii~sp-~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~ 148 (336)
T PLN02643 70 KVRVIENLYPALSRDLEPPCTEGQGEDYGGRRLPGFGFHDVVIETP-VHSVQLSDLPARHIGEVLKAYKKRINQLQSDSR 148 (336)
T ss_pred eEEEEeCCCccccCCCCCCcccccCcchhhcccceeeEEEEEEeCC-ccCCChHHCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46899999998742 33222222 3332 2355555555554433 11 22
Q ss_pred -CCeEEEEec-CCCCCCCCeeEEEEeeCCCCCC
Q 040147 203 -PFFRLGYNS-LGAFATINHLHFQAYYLPLPFP 233 (412)
Q Consensus 203 -~gfrvfyNs-~gA~ASv~HlHfq~~~~~~~lP 233 (412)
...-+|=|- ..||||..|-|-|++-.+. +|
T Consensus 149 i~yv~iF~N~G~~aGaSl~HPH~Qi~a~~~-vP 180 (336)
T PLN02643 149 FKYVQVFKNHGASAGASMSHSHSQIIALPV-VP 180 (336)
T ss_pred ceEEEEEeecCccCCcCCCCCceeeEecCc-CC
Confidence 255678888 9999999999999998875 44
No 27
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=96.58 E-value=0.15 Score=52.33 Aligned_cols=187 Identities=14% Similarity=0.110 Sum_probs=100.7
Q ss_pred EEEEEcCCCCCC--------c-------------eEEEeeccccCcc--cccCHHHHHHHHHHHHH----c--CCCCeEE
Q 040147 157 SVVAINVSPIEY--------G-------------HVLLIPRVLDCLP--QRIDHESFLLALYVAKE----A--ADPFFRL 207 (412)
Q Consensus 157 ~~vllN~~Pi~~--------~-------------H~LlVP~~~~~~p--q~l~~~~l~~~~~la~~----~--~~~gfrv 207 (412)
..|+-|+||... + |-.|| ..-+|.. ..|+.+.+..++++.++ + +-...-+
T Consensus 72 ~rv~~N~fPal~~~~~~~~~~~~~l~~~~~~~G~~eViv-~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~i~yv~i 150 (346)
T PRK11720 72 TYVFTNDFAALMPDTPDAPESDDPLFRCQSARGTSRVIC-FSPDHSKTLPELSVAALREVVDTWQEQTAELGKTYPWVQV 150 (346)
T ss_pred EEEEcCCCchhccCCCCCCcccCcccccCccceEEEEEE-ECCCcCCChhHCCHHHHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 458999999874 1 44333 2224443 33566656655554431 1 1335567
Q ss_pred EEec-CCCCCCCCeeEEEEeeCCCCCCCCCCC----------------cccccccccccCCcceEE-------ecc---C
Q 040147 208 GYNS-LGAFATINHLHFQAYYLPLPFPVEKAP----------------TSRIVTVKGHQDTQVIIS-------QLL---N 260 (412)
Q Consensus 208 fyNs-~gA~ASv~HlHfq~~~~~~~lPiE~~~----------------~~~l~~~~~~~~~g~~i~-------~l~---~ 260 (412)
|=|- ..||||..|-|-|++-.+. +|-+-.. ...+..+... .....++ .++ -
T Consensus 151 F~N~G~~~GaSl~HPH~Qi~a~p~-vP~~~~~e~~~~~~y~~~~g~Clfcdii~~E~~-~~~RiV~End~fvAf~p~~p~ 228 (346)
T PRK11720 151 FENKGAAMGCSNPHPHGQIWANSF-LPNEAEREDRLQRAYFAEHGSPLLVDYVQRELA-DGERIVVETEHWLAVVPYWAA 228 (346)
T ss_pred EeecCcccCcCCCCCceeeeeCCC-CChHHHHHHHHHHHHHHHcCCeEHHHHHHhhhh-cCCeEEEECCCEEEEeccccC
Confidence 7787 9999999999999998876 4432110 0001001000 0011122 222 2
Q ss_pred CcceeEEEecC---C-------cHHHHHHHHHHHHHhh---hCCCCCeEEEEEcC-----C-----eEEEEEecch-Hhh
Q 040147 261 YPVRGLVFEVG---K-------SLRDLSHAVASSCICL---QNNNIPFNVLISDC-----G-----RRIILFPQCY-AEK 316 (412)
Q Consensus 261 yP~~~fvf~~~---~-------~~~~L~~~l~~~l~~L---~~~~~PyNLlitr~-----g-----~rv~l~PR~~-~~k 316 (412)
+|....++.-. + ...+|+..+.+++..+ -+.+.|||+.+-.. + |.+-|+||-. ..
T Consensus 229 ~P~h~lIiPKrH~~~~~dl~dee~~~La~~lk~v~~~l~~~~~~~~pyn~~~h~~p~~~~~~~~~H~HihiiPrl~Rs~- 307 (346)
T PRK11720 229 WPFETLLLPKAHVLRLTDLTDAQRDDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENDHWQLHAHFYPPLLRSA- 307 (346)
T ss_pred CCCeEEEecccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeEEecccCCCCCeeEEEEEEEeCCccCcc-
Confidence 44556665421 1 3345666665555444 34556799976431 1 6788999832 11
Q ss_pred hhcccccccccccccccchhcccceeeecChhHHHHHhHHHHHHHHHhc
Q 040147 317 QALGEVSQELLDTQVNPAAWEISGHIVLKRRKDFEEASEEYAWRVLSEV 365 (412)
Q Consensus 317 q~~ge~~~~lL~~~~spaa~ElaG~llvk~~edfe~lte~~~~~iL~ev 365 (412)
... .| .+..|++|..+.. ++.|.+.+.|+++
T Consensus 308 -----~~~-----k~-~aGfE~~g~~in~-------~~PE~aA~~LR~~ 338 (346)
T PRK11720 308 -----TVR-----KF-MVGYEMLAETQRD-------LTAEQAAERLRAV 338 (346)
T ss_pred -----ccc-----cc-eeeeecccCccCC-------CCHHHHHHHHhhc
Confidence 000 11 3467887776543 5778888888886
No 28
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=95.35 E-value=0.99 Score=46.36 Aligned_cols=188 Identities=13% Similarity=0.086 Sum_probs=102.6
Q ss_pred EEEEEcCCCCCC--------c-------------eEEEeeccccCc--ccccCHHHHHHHHHHHH----HcC--CCCeEE
Q 040147 157 SVVAINVSPIEY--------G-------------HVLLIPRVLDCL--PQRIDHESFLLALYVAK----EAA--DPFFRL 207 (412)
Q Consensus 157 ~~vllN~~Pi~~--------~-------------H~LlVP~~~~~~--pq~l~~~~l~~~~~la~----~~~--~~gfrv 207 (412)
..|+-|+||... + |=.|| ..-+|. ...|+.+.+..++++.+ ++. -...-+
T Consensus 72 ~rV~~N~fPal~~~~~~~~~~~~~l~~~~~~~G~~eVii-~sp~H~~~l~~m~~~~i~~v~~~~~~r~~~l~~~i~yv~i 150 (347)
T TIGR00209 72 TYVFTNDFAALMSDTPDAPESHDPLMRCQSARGTSRVIC-FSPDHSKTLPELSVAALTEIVKTWQEQTAELGKTYPWVQI 150 (347)
T ss_pred EEEEeCCCcccccCCCCCCcCCCcccccCCCCeeEEEEE-eCCCccCChhHCCHHHHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 559999999874 1 33233 222333 23356665655554433 111 235557
Q ss_pred EEec-CCCCCCCCeeEEEEeeCCCCCCCCCCC----------------cccccccccccCCcceEE-------eccCC--
Q 040147 208 GYNS-LGAFATINHLHFQAYYLPLPFPVEKAP----------------TSRIVTVKGHQDTQVIIS-------QLLNY-- 261 (412)
Q Consensus 208 fyNs-~gA~ASv~HlHfq~~~~~~~lPiE~~~----------------~~~l~~~~~~~~~g~~i~-------~l~~y-- 261 (412)
|=|- ..||||..|-|-|++-.+. +|-+-.. ...+..+... .+...++ .++-+
T Consensus 151 F~N~G~~~GaSl~HPH~Qi~a~p~-vP~~~~~e~~~~~~y~~~~g~clfcdIi~~E~~-~~~riV~End~fvAf~p~~p~ 228 (347)
T TIGR00209 151 FENKGAAMGCSNPHPHGQIWANSF-LPNEVEREDRLQKEYFAEHKSPMLVDYVKRELA-DKSRTVVETEHWIAVVPYWAI 228 (347)
T ss_pred EeecCcccCcCCCCCceeeeeCCC-CChHHHHHHHHHHHHHHHcCCccHHHHHHhHhh-cCCeEEEECCCEEEEeccCCC
Confidence 7787 9999999999999998877 5533110 0001000000 0111122 23323
Q ss_pred -cceeEEEecC---------C-cHHHHHHHHHHHHHhh---hCCCCCeEEEEEcC--------C--eEEEEEecc-hHhh
Q 040147 262 -PVRGLVFEVG---------K-SLRDLSHAVASSCICL---QNNNIPFNVLISDC--------G--RRIILFPQC-YAEK 316 (412)
Q Consensus 262 -P~~~fvf~~~---------~-~~~~L~~~l~~~l~~L---~~~~~PyNLlitr~--------g--~rv~l~PR~-~~~k 316 (412)
|...+|+.-. + ...+|+..+.+++..+ -+.+.|||+.+-.. . |-+=|+||- ...
T Consensus 229 ~Pgh~lIiPKrH~~~~~dl~d~e~~~La~~lk~v~~~l~~~~~~~~pYn~~~h~~p~~~~~~~~~H~HihiiPrl~R~~- 307 (347)
T TIGR00209 229 WPFETLLLPKAHVLRITDLTDAQRSDLALILKKLTSKYDNLFETSFPYSMGWHGAPFNGEENQHWQLHAHFYPPLLRSA- 307 (347)
T ss_pred CCCeEEEeeccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEecccCCCCCcEEEEEEEEeCCccccc-
Confidence 3455665421 1 3345665555555444 34566899987531 1 788899993 221
Q ss_pred hhcccccccccccccccchhcccceeeecChhHHHHHhHHHHHHHHHhcc
Q 040147 317 QALGEVSQELLDTQVNPAAWEISGHIVLKRRKDFEEASEEYAWRVLSEVS 366 (412)
Q Consensus 317 q~~ge~~~~lL~~~~spaa~ElaG~llvk~~edfe~lte~~~~~iL~evs 366 (412)
... =-.+.+|+.|..+-. ++.|.+.+.|++++
T Consensus 308 -----~~~------k~~aGfE~~g~~in~-------~~PE~aA~~LR~~~ 339 (347)
T TIGR00209 308 -----TVR------KFMVGYEMLGETQRD-------LTAEQAAERLRALS 339 (347)
T ss_pred -----ccc------cceeehhhhcCccCC-------CCHHHHHHHHHhcc
Confidence 000 124567888877643 57888888889883
No 29
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=94.50 E-value=0.034 Score=51.16 Aligned_cols=72 Identities=21% Similarity=0.365 Sum_probs=45.3
Q ss_pred CcEEEEEcCCCCCCceEEEeeccccCcccccC--HHHHHHHHH-------HHHHcC----CCCeEEEEecCCCCCCCCee
Q 040147 155 SPSVVAINVSPIEYGHVLLIPRVLDCLPQRID--HESFLLALY-------VAKEAA----DPFFRLGYNSLGAFATINHL 221 (412)
Q Consensus 155 ~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~--~~~l~~~~~-------la~~~~----~~gfrvfyNs~gA~ASv~Hl 221 (412)
+..+||.++||-+..|+|+.|+. ...+...+ .+.|..+.. ...... ...||+||-+ .-|.+|+
T Consensus 23 d~vvvIrD~fPKa~~H~LvLpr~-s~i~~l~~~~qe~l~ll~~~h~~~~~~v~~~~~~~~~~~f~vG~Ha---vPSM~~L 98 (184)
T KOG0562|consen 23 DDVVVIRDKFPKARMHLLVLPRR-SSIDSLFSVVQEHLSLLKEDHAVGPCWVDQLTNEALCNYFRVGFHA---VPSMNNL 98 (184)
T ss_pred ccEEEEcccCccceeEEEEeccc-chhHHHHHHHHHHhhHhHHHhhcCchHHHHhcchhhhhheeeeecc---Ccchhhe
Confidence 67899999999999999999975 22222221 111111111 111111 2368888875 4456799
Q ss_pred EEEEeeCCC
Q 040147 222 HFQAYYLPL 230 (412)
Q Consensus 222 Hfq~~~~~~ 230 (412)
|+|++..+.
T Consensus 99 HLHVISkDf 107 (184)
T KOG0562|consen 99 HLHVISKDF 107 (184)
T ss_pred eEEEeeccc
Confidence 999999866
No 30
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.50 E-value=0.057 Score=56.82 Aligned_cols=72 Identities=21% Similarity=0.133 Sum_probs=47.0
Q ss_pred CCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHHHcCCCCeEEEEecCCCC--------CCCCeeEEEE
Q 040147 154 KSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEAADPFFRLGYNSLGAF--------ATINHLHFQA 225 (412)
Q Consensus 154 ~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~~~~~~gfrvfyNs~gA~--------ASv~HlHfq~ 225 (412)
+.++.+.+-+=|+..+|+||||-.|..-...++++....+.+.-. ++|-+||+.|-. .-.-|+|+|+
T Consensus 339 G~~~YlAlaKGpLs~~HvlIipi~H~p~~~~ls~ev~~Ei~kyka-----al~~myk~~g~~~vvfE~~~~rs~Hlq~Qv 413 (528)
T KOG2476|consen 339 GNHFYLALAKGPLSSDHVLIIPIEHIPSLVPLSAEVTQEINKYKA-----ALRKMYKKQGKDAVVFERQSYRSVHLQLQV 413 (528)
T ss_pred cceeEEeecCCCCCCCeEEEEEcccccccccCCHHHHHHHHHHHH-----HHHHHHHhcCCeEEEEEeecccceeeEEEE
Confidence 677889999999999999999999555555567766555544322 222334432211 1124999999
Q ss_pred eeCCC
Q 040147 226 YYLPL 230 (412)
Q Consensus 226 ~~~~~ 230 (412)
++.+.
T Consensus 414 ipvpk 418 (528)
T KOG2476|consen 414 IPVPK 418 (528)
T ss_pred Eeccc
Confidence 87644
No 31
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3.6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol [].; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2POF_A.
Probab=90.66 E-value=0.83 Score=44.20 Aligned_cols=72 Identities=22% Similarity=0.167 Sum_probs=40.7
Q ss_pred CCcEEEEEcCCCCCCceEEEeeccc---cCccccc---CHHHHHHHH----HHHHHcC----CCCeEEEEecCCCCCCCC
Q 040147 154 KSPSVVAINVSPIEYGHVLLIPRVL---DCLPQRI---DHESFLLAL----YVAKEAA----DPFFRLGYNSLGAFATIN 219 (412)
Q Consensus 154 ~~~~~vllN~~Pi~~~H~LlVP~~~---~~~pq~l---~~~~l~~~~----~la~~~~----~~gfrvfyNs~gA~ASv~ 219 (412)
+..++|+-+ +..+.|+||||..- ..-|..+ +++-|..++ .++...+ +..+-+..||..+- |+|
T Consensus 32 ~~gyvvlKd--~~G~~qyLL~Pt~rIsGIEsP~Ll~~~~pNyf~~AW~aR~~v~~~~g~~lpd~~lsLaINS~~gR-sQd 108 (222)
T PF02611_consen 32 QQGYVVLKD--RNGPLQYLLMPTDRISGIESPALLEPRTPNYFADAWQARGFVSQKLGKPLPDDDLSLAINSQYGR-SQD 108 (222)
T ss_dssp TTTEEEEE---SSSSS-EEEEESS---STT-GGGGSTTS--HHHHHHHTTHHHHHHHTS---GGGEEEEEB-GGG--S--
T ss_pred CCCEEEEeC--CCCCccEEEeeccccCCccChhhcCCCCccHHHHHHHhhHHHHHhcCCCCCccceEEEecCccCc-ccc
Confidence 456777765 78899999999873 1224444 466677777 2344333 45788999994442 589
Q ss_pred eeEEEEeeC
Q 040147 220 HLHFQAYYL 228 (412)
Q Consensus 220 HlHfq~~~~ 228 (412)
|||+|+-.+
T Consensus 109 QLHIHisCl 117 (222)
T PF02611_consen 109 QLHIHISCL 117 (222)
T ss_dssp S--EEEEEB
T ss_pred ceEeEhhhc
Confidence 999999655
No 32
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=85.24 E-value=6 Score=40.61 Aligned_cols=66 Identities=21% Similarity=0.189 Sum_probs=44.9
Q ss_pred CceEEEeeccccCcc--cccCHHHHHHHHHHHHHc--------CCCCeEEEEec-CCCCCCCCeeEEEEeeCCCCCCC
Q 040147 168 YGHVLLIPRVLDCLP--QRIDHESFLLALYVAKEA--------ADPFFRLGYNS-LGAFATINHLHFQAYYLPLPFPV 234 (412)
Q Consensus 168 ~~H~LlVP~~~~~~p--q~l~~~~l~~~~~la~~~--------~~~gfrvfyNs-~gA~ASv~HlHfq~~~~~~~lPi 234 (412)
.||.+||-..-+|.. ..++...+..+.++..+. .-....+|=|. ..+|+|.+|-|-|++-++. +|-
T Consensus 92 ~g~~~VIvesp~H~~~l~~~~~~~~~~vv~~~~e~~~~L~~~~~~~yV~iF~N~Gk~~G~S~~HPH~Qi~a~~~-~P~ 168 (338)
T COG1085 92 RGKSRVIVESPDHSKTLPELPVEEIEEVVKLWQERVRELYEREKYKYVQIFENKGKAAGASLPHPHGQIVALPV-LPL 168 (338)
T ss_pred CcceEEEEECCcccCccccCCHHHHHHHHHHHHHHHHHHhhccCcceEEeeeccCcccCccCCCCCcceeeccc-CCh
Confidence 355555544434443 235666677776666532 14578899999 9999999999999998876 553
No 33
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional
Probab=85.11 E-value=1.4 Score=43.24 Aligned_cols=72 Identities=24% Similarity=0.166 Sum_probs=47.5
Q ss_pred CCcEEEEEcCCCCCCceEEEeeccc---cCccccc---CHHHHHHHHH----HHHHc----CCCCeEEEEecCCCCCCCC
Q 040147 154 KSPSVVAINVSPIEYGHVLLIPRVL---DCLPQRI---DHESFLLALY----VAKEA----ADPFFRLGYNSLGAFATIN 219 (412)
Q Consensus 154 ~~~~~vllN~~Pi~~~H~LlVP~~~---~~~pq~l---~~~~l~~~~~----la~~~----~~~gfrvfyNs~gA~ASv~ 219 (412)
...++|+- =+..|.|.||||..- ...|+.+ +++-|..++. +.... .+...-+..||..+- |+|
T Consensus 61 ~~gyvvlK--D~~Gp~qyLLiPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS~~gR-SQn 137 (252)
T PRK05471 61 QAGYVLLK--DRNGPLQYLLMPTYRISGIESPLLLEPSTPNYFALAWQARDFMSKKYGKPIPDSAVSLAINSRYGR-TQD 137 (252)
T ss_pred CCCeEEEe--cCCCCcceEEeecccccCccCccccCCCCccHHHHHHHHhHHHHHhhCCCCChhheEEEecCCCCc-ccc
Confidence 45566665 567899999999874 2235555 3556666665 22223 244677899995443 599
Q ss_pred eeEEEEeeC
Q 040147 220 HLHFQAYYL 228 (412)
Q Consensus 220 HlHfq~~~~ 228 (412)
|||.|+-.+
T Consensus 138 QLHIHIsCl 146 (252)
T PRK05471 138 QLHIHISCL 146 (252)
T ss_pred ceeeehhhC
Confidence 999999555
No 34
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type. Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.
Probab=84.85 E-value=2.5 Score=41.58 Aligned_cols=72 Identities=24% Similarity=0.224 Sum_probs=48.7
Q ss_pred CCcEEEEEcCCCCCCceEEEeeccc---cCccccc---CHHHHHHHHH----HHHHcC----CCCeEEEEecCCCCCCCC
Q 040147 154 KSPSVVAINVSPIEYGHVLLIPRVL---DCLPQRI---DHESFLLALY----VAKEAA----DPFFRLGYNSLGAFATIN 219 (412)
Q Consensus 154 ~~~~~vllN~~Pi~~~H~LlVP~~~---~~~pq~l---~~~~l~~~~~----la~~~~----~~gfrvfyNs~gA~ASv~ 219 (412)
...++|+-++ ..|.|.||||..- ...|+.+ +++-|..++. +....+ +...-+..||..+- |+|
T Consensus 60 ~~gyvvlKD~--~Gp~qyLLmPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS~~gR-SQn 136 (250)
T TIGR00672 60 NAGYVVLKDL--NGPLQYLLMPTYRINGTESPLLLDPSTPNFFWLAWQARDFMSKKYGQPIPDRAVSLAINSRTGR-SQN 136 (250)
T ss_pred CCCeEEEeCC--CCCceeEEeeccccCCccChhhcCCCCccHHHHHHHHhHHHHHhcCCCCChhheeEEecCCCCc-ccc
Confidence 5678888887 8899999999873 2234444 4556666662 222332 34677899995443 599
Q ss_pred eeEEEEeeC
Q 040147 220 HLHFQAYYL 228 (412)
Q Consensus 220 HlHfq~~~~ 228 (412)
|+|.|+-.+
T Consensus 137 QLHIHIsCl 145 (250)
T TIGR00672 137 HFHIHISCI 145 (250)
T ss_pred cceeeHhhC
Confidence 999999554
No 35
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
Probab=75.20 E-value=16 Score=33.53 Aligned_cols=77 Identities=9% Similarity=-0.116 Sum_probs=34.7
Q ss_pred ecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHH----Hc----C-CCCeEEEEec-CCCCCCC-C
Q 040147 151 DDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAK----EA----A-DPFFRLGYNS-LGAFATI-N 219 (412)
Q Consensus 151 ~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~----~~----~-~~gfrvfyNs-~gA~ASv-~ 219 (412)
..+|+.+++++--+.--|..++++|+++...-..++.+....+..+.+ .. + +.-|.++... +..+... .
T Consensus 32 v~en~~f~a~vP~~a~wP~ev~ilpkrh~~~l~~l~~~E~~dlA~~l~~i~~r~d~lf~~~~pY~m~ihqaP~~~~~~~~ 111 (166)
T PF02744_consen 32 VYENEHFVAFVPFAARWPFEVWILPKRHVPSLADLTDEERDDLAAILKPILRRYDNLFETSFPYNMGIHQAPVNGEDPEH 111 (166)
T ss_dssp EEE-SSEEEE--TT--STT-EEEEESS--SSGGG--HHHHHHHHHHHHHHHHHHHHHCTS---EEEEEE---SSSS--TT
T ss_pred EEECCceEEEEECcccCCcEEEEecCCChhhHHHhhhHHHhhHHHHHHHHHHHhcccCCCCCCCchhhhcCCCCcccchh
Confidence 345888999999999999999999999655555566553333333222 22 2 2346566655 3333322 2
Q ss_pred eeEEEEee
Q 040147 220 HLHFQAYY 227 (412)
Q Consensus 220 HlHfq~~~ 227 (412)
+.|+|+.+
T Consensus 112 ~fH~H~e~ 119 (166)
T PF02744_consen 112 WFHPHFEP 119 (166)
T ss_dssp --EEEEE-
T ss_pred hhhccccc
Confidence 37777654
No 36
>KOG2477 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.76 E-value=12 Score=40.26 Aligned_cols=79 Identities=10% Similarity=0.111 Sum_probs=55.3
Q ss_pred ecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHH------HcCCCCeEEEEecCCCCCCCCeeEEE
Q 040147 151 DDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAK------EAADPFFRLGYNSLGAFATINHLHFQ 224 (412)
Q Consensus 151 ~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~------~~~~~gfrvfyNs~gA~ASv~HlHfq 224 (412)
.+.+..|+.|.--=|+..||++|||-.|..-.-.++.+.+..+..+.+ ...+.+. |||-....-.+=.|.-.|
T Consensus 425 Slg~~tYLsLp~~~gL~~gHciIvptqH~~~t~slDEdvWDEIrnfrKcL~~Mfas~n~dv-iFyE~a~~l~rrpH~~Ie 503 (628)
T KOG2477|consen 425 SLGHRTYLSLPTQPGLAKGHCIIVPTQHRINTLSLDEDVWDEIRNFRKCLALMFASMNLDV-IFYENAPSLQRRPHTAIE 503 (628)
T ss_pred EeccceeEeccccCccccCceEEecccccccccccchHHHHHHHHHHHHHHHHHHhcCCCe-EEEeccCccccCCceeEE
Confidence 344667778888889999999999999766666677776666543322 2234555 888874444446799999
Q ss_pred EeeCCC
Q 040147 225 AYYLPL 230 (412)
Q Consensus 225 ~~~~~~ 230 (412)
.+|.+.
T Consensus 504 CIPvpq 509 (628)
T KOG2477|consen 504 CIPVPQ 509 (628)
T ss_pred EeechH
Confidence 887754
No 37
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C 1Z84_B 1ZWJ_A 2Q4L_A 2H39_B 2Q4H_A.
Probab=72.33 E-value=47 Score=30.78 Aligned_cols=119 Identities=20% Similarity=0.073 Sum_probs=56.5
Q ss_pred Eccccccccccchhhhccc---ccccCcCCCCCCCCCcccccEEEecCCCcEEEEEcCCCCC------------------
Q 040147 109 LNEGRHLKKRATEFRIDQV---LQSFDENKFNFTKIGQEEMLFRLDDSKSPSVVAINVSPIE------------------ 167 (412)
Q Consensus 109 lNp~R~~kkrpt~~~id~~---~~pf~~~kfnF~ki~~~Eil~~~~~~~~~~~vllN~~Pi~------------------ 167 (412)
+.++|.. ||..+..... ..+.+...+.||+- ++++.-.+....-...++-|.||..
T Consensus 26 ~a~~R~~--Rp~~~~~~~~~~~~~~~d~~~cpfcpg-~e~~~~~~~~~~~~~rv~~N~fpal~~~~~~~~~~~i~~~~~~ 102 (183)
T PF01087_consen 26 IAPERAK--RPWAGENERIKDELPSRDEPMCPFCPG-NEEVNEIFNPDYWSVRVFPNKFPALSPENNYIRTDAIAKNGLF 102 (183)
T ss_dssp E-CCGGG--SCCCS------S---SS--TT-TTSTT--CGCCCECTT-SSSEEEEE-TT-SSBCCGTTTHB------SSS
T ss_pred cCHhHhc--CchhhhccccCCCCCCCCCCCCCcCCC-CccccccccccccchhhhhccchhhCccccCcccccccCCCcc
Confidence 7788873 4653322111 12333233667665 3333222111114567888888853
Q ss_pred -----CceEEEeeccccCc--ccccCHHHHHHHHHHH-----HHcC---CCCeEEEEec-CCCCCCCCeeEEEEeeCCC
Q 040147 168 -----YGHVLLIPRVLDCL--PQRIDHESFLLALYVA-----KEAA---DPFFRLGYNS-LGAFATINHLHFQAYYLPL 230 (412)
Q Consensus 168 -----~~H~LlVP~~~~~~--pq~l~~~~l~~~~~la-----~~~~---~~gfrvfyNs-~gA~ASv~HlHfq~~~~~~ 230 (412)
+|..=||-..-+|. ...|+.+++..++++. .... ....-+|=|- ..||||..|-|-|++-.++
T Consensus 103 ~~~~~~G~hEViIe~p~h~~~~~~~~~~~~~~i~~a~~~r~~~l~~~~~~~yv~~FeN~G~~~GaSl~HpHsQi~a~~~ 181 (183)
T PF01087_consen 103 KSESGYGAHEVIIESPKHERTLADMSVKEIKEILKAWRDRYRELSSDKYIKYVLIFENEGYEAGASLPHPHSQIIALPH 181 (183)
T ss_dssp -EEE-BEEEEEEES-SSTT--GGGS-HHHHHHHHHHHHHHHHHHCT-TT-SEEEEEEEESGGGT-SSSSSEEEEEEESS
T ss_pred cccCCCCCeEEEEeCCCCCCChhhCCHHHHHHHHHHHHHHHHHHhccCCcceEEEEEecCCcCCCCCCCCceEEecCCc
Confidence 44222333332444 3446666666665542 2212 2345567787 8899999999999997765
No 38
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=67.41 E-value=7 Score=40.16 Aligned_cols=63 Identities=11% Similarity=-0.015 Sum_probs=46.7
Q ss_pred CCCCCCCcccccE--EEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHH
Q 040147 136 FNFTKIGQEEMLF--RLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAK 198 (412)
Q Consensus 136 fnF~ki~~~Eil~--~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~ 198 (412)
+-+|.+...|.-- ++.+++++.++++--++.-|.++++.|+++......++.+....+..+.+
T Consensus 187 ~~~~~~ve~E~~~~~R~v~e~~~~~a~~Pf~a~~pfEv~i~pk~hv~~l~~~sdee~~~lA~ilk 251 (338)
T COG1085 187 CMYCDLVEREKGDGERIVVENDHFLAFVPFWARWPFEVLIYPKEHVSFLTDLSDEELKDLAEILK 251 (338)
T ss_pred chHHHHHHHHhccCceEEecCceeEEeccccccCceEEEeccHHHhhhhhhCCHHHHHHHHHHHH
Confidence 5566665555553 66778999999999999999999999999776666677665554444433
No 39
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=32.83 E-value=79 Score=32.19 Aligned_cols=77 Identities=18% Similarity=0.131 Sum_probs=46.6
Q ss_pred ecCCCcEEEEEcCCCCCCceEEEeeccccCcccccC---HHHHHHHHHHHH-----HcC-CCCeEEEEec--CCCCCCC-
Q 040147 151 DDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRID---HESFLLALYVAK-----EAA-DPFFRLGYNS--LGAFATI- 218 (412)
Q Consensus 151 ~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~---~~~l~~~~~la~-----~~~-~~gfrvfyNs--~gA~ASv- 218 (412)
+.+++++++++--.-.-|.-.||||+++-..-..|+ ..+|..+++++. .+. ..-|.+|.-+ .++.+.-
T Consensus 218 v~enehfivvvPywA~wPfEtllipk~h~~~~~~l~~~~k~dLasiLK~ll~KydnlfetsfPYsmg~h~aPl~~t~~e~ 297 (354)
T KOG2958|consen 218 VVENEHFIVVVPYWATWPFETLLIPKRHVSRFHELDEVEKVDLASILKLLLIKYDNLFETSFPYSMGIHGAPLGSTEQEN 297 (354)
T ss_pred EeecCceEEEeehhhcCcceeeeechhhhhhhcccchHHHhhHHHHHHHHHHHHHHhhccCCccccccccCCcccccccc
Confidence 457888999888878888889999999643322333 445666655443 222 2346677776 4443322
Q ss_pred -Cee-EEEEee
Q 040147 219 -NHL-HFQAYY 227 (412)
Q Consensus 219 -~Hl-Hfq~~~ 227 (412)
+|. |.|+++
T Consensus 298 ~n~W~h~hFyp 308 (354)
T KOG2958|consen 298 YNHWLHMHFYP 308 (354)
T ss_pred cchhhhhhccc
Confidence 564 555544
No 40
>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism]
Probab=26.14 E-value=2.4e+02 Score=27.46 Aligned_cols=72 Identities=22% Similarity=0.195 Sum_probs=41.9
Q ss_pred CCcEEEEEcCCCCCCceEEEeeccc---cCccccc---CHHHHHHHHH----HHHHcC----CCCeEEEEecCCCCCCCC
Q 040147 154 KSPSVVAINVSPIEYGHVLLIPRVL---DCLPQRI---DHESFLLALY----VAKEAA----DPFFRLGYNSLGAFATIN 219 (412)
Q Consensus 154 ~~~~~vllN~~Pi~~~H~LlVP~~~---~~~pq~l---~~~~l~~~~~----la~~~~----~~gfrvfyNs~gA~ASv~ 219 (412)
+..++|+-+.+ .|.-.|++|... ...|+.+ ++.-|-.++. +.+..+ ++..-+..||..|- |+|
T Consensus 61 ~AG~av~Kd~~--gPlQyLLmPt~rItGiEsP~L~e~atpNyf~~AWqAR~fms~kyg~~ipd~dvsLaINs~~gR-tQd 137 (252)
T COG2134 61 QAGYAVLKDRN--GPLQYLLMPTARITGIESPLLLEPATPNYFYLAWQARDFMSKKYGNPIPDSDVSLAINSKNGR-TQD 137 (252)
T ss_pred CCceEEEeccC--CCceeEeeeeecccCCcChhhcCCCCccHHHHHHHHHHHHHHHhCCCCCccceEEEecCccCc-ccc
Confidence 44555655544 355677888763 1234443 3443433332 333443 45778899995443 589
Q ss_pred eeEEEEeeC
Q 040147 220 HLHFQAYYL 228 (412)
Q Consensus 220 HlHfq~~~~ 228 (412)
|+|.|+-..
T Consensus 138 qlHIHISCi 146 (252)
T COG2134 138 QLHIHISCI 146 (252)
T ss_pred ceEEEEEec
Confidence 999999654
No 41
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=23.73 E-value=6.3e+02 Score=25.94 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=24.9
Q ss_pred CCeEEEEec-CCCCCCCCeeEEEEeeCCCCCC
Q 040147 203 PFFRLGYNS-LGAFATINHLHFQAYYLPLPFP 233 (412)
Q Consensus 203 ~gfrvfyNs-~gA~ASv~HlHfq~~~~~~~lP 233 (412)
+..-||=|= ..+|+|-.|-|-|++-++. +|
T Consensus 151 ~yvQIFeNkGa~mGcSn~HpHgQ~wal~~-lP 181 (354)
T KOG2958|consen 151 KYVQIFENKGAAMGCSNPHPHGQAWALPV-LP 181 (354)
T ss_pred ceeeeeccCCcccccCCCCcccceeeccc-CC
Confidence 356788887 8888999999999998877 55
No 42
>PRK10119 putative hydrolase; Provisional
Probab=23.69 E-value=92 Score=30.33 Aligned_cols=55 Identities=27% Similarity=0.395 Sum_probs=41.6
Q ss_pred HhHHHHHHHHHh--ccCCHHHHHHHHHHHHHHhccC---CcccccccccccccccCccccc
Q 040147 353 ASEEYAWRVLSE--VSLSEERFQEVKAYVLEAVGLQ---KPILEENGIIQEEDSLDKLPAL 408 (412)
Q Consensus 353 lte~~~~~iL~e--vsl~e~~f~~l~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 408 (412)
...+.+..+|++ .+++++..+.|+..|. ..+++ .|..-|-.++||-|-||.|-|.
T Consensus 76 ~~a~~a~~~L~~~~~g~~~~~i~~V~~iI~-~~sfs~~~~p~tlE~kIVQDADRLDAiGAI 135 (231)
T PRK10119 76 LAAEETRRILREDFPDFPAEKIEAVCHAIE-AHSFSAQIAPLTLEAKIVQDADRLEALGAI 135 (231)
T ss_pred HHHHHHHHHHHHcccCcCHHHHHHHHHHHH-HcCCCCCCCCCCHHHhhhhhHHHHHhcchH
Confidence 345667889999 8999999999988764 44444 3444567899999999988764
No 43
>PF11212 DUF2999: Protein of unknown function (DUF2999); InterPro: IPR021376 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.20 E-value=85 Score=25.42 Aligned_cols=36 Identities=17% Similarity=0.380 Sum_probs=29.7
Q ss_pred hhHHHHHhHH--HHHHHHHhccCCHHHHHHHHHHHHHH
Q 040147 347 RKDFEEASEE--YAWRVLSEVSLSEERFQEVKAYVLEA 382 (412)
Q Consensus 347 ~edfe~lte~--~~~~iL~evsl~e~~f~~l~~~l~~~ 382 (412)
.+-|+.+|+. .+...+.+.|+|.+..+.+-......
T Consensus 19 ~elFq~lT~NPl~AMa~i~qLGip~eKLQ~lm~~VMqn 56 (82)
T PF11212_consen 19 NELFQALTQNPLAAMATIQQLGIPQEKLQQLMAQVMQN 56 (82)
T ss_pred HHHHHHHhhCHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4678999987 67788899999999999988776643
Done!