Query 040147
Match_columns 412
No_of_seqs 230 out of 744
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 08:31:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040147.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040147hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n1s_A HIT-like protein HINT; 99.5 3.4E-15 1.2E-19 127.7 5.3 96 135-230 4-109 (119)
2 3o1c_A Histidine triad nucleot 99.5 9.2E-15 3.2E-19 126.1 4.7 98 133-230 14-120 (126)
3 3oj7_A Putative histidine tria 99.5 1.5E-14 5E-19 123.0 5.1 95 136-230 9-111 (117)
4 4egu_A Histidine triad (HIT) p 99.5 2.2E-14 7.6E-19 122.1 5.8 96 135-230 5-110 (119)
5 3ksv_A Uncharacterized protein 99.5 3.4E-14 1.2E-18 126.4 7.0 94 135-228 12-114 (149)
6 3o0m_A HIT family protein; ssg 99.5 3.8E-14 1.3E-18 125.6 6.5 94 135-228 6-109 (149)
7 3imi_A HIT family protein; str 99.5 4.7E-14 1.6E-18 124.8 6.0 94 135-228 10-112 (147)
8 3lb5_A HIT-like protein involv 99.4 8.7E-14 3E-18 125.3 6.7 95 134-228 28-131 (161)
9 2eo4_A 150AA long hypothetical 99.4 1.2E-13 4E-18 122.1 6.1 93 137-229 2-103 (149)
10 3l7x_A SMU.412C, putative HIT- 99.4 1.1E-13 3.8E-18 126.2 5.8 94 135-228 37-139 (173)
11 1y23_A HIT, histidine triad pr 99.4 1.1E-13 3.7E-18 121.5 4.3 95 134-228 5-108 (145)
12 1xqu_A HIT family hydrolase; p 99.4 7.3E-13 2.5E-17 117.7 7.8 94 135-228 36-139 (147)
13 3ano_A AP-4-A phosphorylase; d 99.3 1.6E-12 5.4E-17 122.8 6.1 95 135-229 70-175 (218)
14 3r6f_A HIT family protein; str 99.3 1.3E-12 4.5E-17 113.9 4.5 91 135-228 7-101 (135)
15 1fit_A FragIle histidine prote 99.3 4.3E-12 1.5E-16 111.8 7.5 81 149-229 14-103 (147)
16 3p0t_A Uncharacterized protein 99.3 1.8E-12 6.1E-17 113.1 4.1 90 136-229 7-104 (138)
17 1ems_A Nitfhit, NIT-fragIle hi 99.1 1.9E-10 6.6E-15 117.5 8.3 94 133-229 296-399 (440)
18 2oik_A Histidine triad (HIT) p 99.0 4.4E-10 1.5E-14 99.8 8.1 87 135-229 11-105 (154)
19 1z84_A Galactose-1-phosphate u 98.9 4.3E-09 1.5E-13 105.6 9.7 91 135-228 215-318 (351)
20 1gup_A Galactose-1-phosphate u 98.9 1.6E-09 5.5E-14 108.5 6.4 94 134-227 194-301 (348)
21 3ohe_A Histidine triad (HIT) p 98.8 1E-08 3.5E-13 89.8 8.3 75 151-229 16-98 (137)
22 3i24_A HIT family hydrolase; s 98.7 2.5E-08 8.7E-13 88.7 8.1 75 151-229 16-98 (149)
23 3sp4_A Aprataxin-like protein; 98.6 2.6E-08 8.8E-13 93.0 4.4 76 150-230 23-127 (204)
24 3nrd_A Histidine triad (HIT) p 98.5 3.2E-07 1.1E-11 80.0 8.6 73 151-228 18-99 (135)
25 1z84_A Galactose-1-phosphate u 98.4 3.8E-05 1.3E-09 76.9 21.0 124 106-233 34-196 (351)
26 3i4s_A Histidine triad protein 98.3 2.3E-06 8E-11 75.9 8.6 71 153-228 23-102 (149)
27 3bl9_A Scavenger mRNA-decappin 95.6 0.066 2.2E-06 52.5 10.6 88 140-230 147-249 (301)
28 1vlr_A MRNA decapping enzyme; 95.2 0.088 3E-06 52.5 10.1 87 141-230 195-296 (350)
29 1gup_A Galactose-1-phosphate u 94.2 0.25 8.5E-06 49.0 10.8 122 106-233 21-176 (348)
30 2pof_A CDP-diacylglycerol pyro 91.1 0.19 6.7E-06 47.2 4.6 72 154-228 37-122 (227)
31 2acm_B Mucin-1; auto-catalytic 22.4 33 0.0011 25.2 1.3 35 74-108 20-54 (55)
No 1
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A*
Probab=99.54 E-value=3.4e-15 Score=127.73 Aligned_cols=96 Identities=21% Similarity=0.196 Sum_probs=77.4
Q ss_pred CCCCCCCCcccccEEEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHH---HHHH----HHHHHHH--cCCCCe
Q 040147 135 KFNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHE---SFLL----ALYVAKE--AADPFF 205 (412)
Q Consensus 135 kfnF~ki~~~Eil~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~---~l~~----~~~la~~--~~~~gf 205 (412)
.+.||++..+|++..+.++++.++++.|.+|+.|||+||||+++...-..|+++ .+.. +.++++. .+..||
T Consensus 4 ~CiFC~I~~ge~~~~iv~ede~~~af~d~~P~~pgH~LViPk~Hv~~l~dL~~~e~~~l~~l~~~~~~v~~~~~~~~~g~ 83 (119)
T 3n1s_A 4 ETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGY 83 (119)
T ss_dssp CCHHHHHHTTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHTTCTTTCE
T ss_pred CChhhhhhcCCCcCCEEEECCCEEEEECCCCCCCCeEEEEehhHhCCHhHcCHHHHHHHHHHHHHHHHHHHHhCCCCCCe
Confidence 467999988899988999999999999999999999999999965555556655 2333 3344443 345799
Q ss_pred EEEEec-CCCCCCCCeeEEEEeeCCC
Q 040147 206 RLGYNS-LGAFATINHLHFQAYYLPL 230 (412)
Q Consensus 206 rvfyNs-~gA~ASv~HlHfq~~~~~~ 230 (412)
|+++|+ ..||+||+|+|+|+++...
T Consensus 84 ni~~n~g~~agq~V~HlH~Hiipr~~ 109 (119)
T 3n1s_A 84 RLIMNTNRHGGQEVYHIHMHLLGGRP 109 (119)
T ss_dssp EEEEEEHHHHTCCSSSCCEEEEESSC
T ss_pred EEEEeCCCCcCCCcCEEEEEEeCCcc
Confidence 999999 7889999999999998743
No 2
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Probab=99.50 E-value=9.2e-15 Score=126.14 Aligned_cols=98 Identities=15% Similarity=0.162 Sum_probs=77.8
Q ss_pred cCCCCCCCCCcccccEEEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHH---H----HHHHHHHHHcC-CCC
Q 040147 133 ENKFNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHES---F----LLALYVAKEAA-DPF 204 (412)
Q Consensus 133 ~~kfnF~ki~~~Eil~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~---l----~~~~~la~~~~-~~g 204 (412)
...+.||++..+|++..+.++++.++++.|.+|+.|||+||||+++...-..|+.++ + ..+.++++... ..|
T Consensus 14 ~~~CiFC~i~~~e~~~~iv~e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~l~~~~~~~~~~~~~~~g 93 (126)
T 3o1c_A 14 GGDTIFGKIIRKEIPAKIIFEDDQALAFHDISPQAPTHFLVIPKKHISQISAAEDADESLLGHLMIVGKKCAADLGLKKG 93 (126)
T ss_dssp TCSSHHHHHHHTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCCCGGGCCGGGHHHHHHHHHHHHHHHHHTTCTTC
T ss_pred CCCCCcchhhcCCCcCCEEEECCCEEEEECCCCCCCceEEEEechHhchHhhCchhHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 345889999888999889999999999999999999999999999655444455432 2 23344455544 349
Q ss_pred eEEEEec-CCCCCCCCeeEEEEeeCCC
Q 040147 205 FRLGYNS-LGAFATINHLHFQAYYLPL 230 (412)
Q Consensus 205 frvfyNs-~gA~ASv~HlHfq~~~~~~ 230 (412)
|++++|. ..||+||+|+|+|+++...
T Consensus 94 ~ni~~n~g~~agq~v~HlH~Hiipr~~ 120 (126)
T 3o1c_A 94 YRMVVNEGSDGGQSVYHVHLHVLGGRQ 120 (126)
T ss_dssp EEEECCCHHHHTCCSSSCCEEEEESSC
T ss_pred eEEEEecCCccCCccCEeEEEEeCCcc
Confidence 9999999 7889999999999998743
No 3
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A*
Probab=99.49 E-value=1.5e-14 Score=123.03 Aligned_cols=95 Identities=22% Similarity=0.216 Sum_probs=75.1
Q ss_pred CCCCCCCcccccEEEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHH---HHHHHH----HHHHHcCCCCeEEE
Q 040147 136 FNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHE---SFLLAL----YVAKEAADPFFRLG 208 (412)
Q Consensus 136 fnF~ki~~~Eil~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~---~l~~~~----~la~~~~~~gfrvf 208 (412)
+.||++..+|++..+.++++.+++++|.+|+.|||+||||+++...-..|+.+ .+..++ ++++..-.+||+++
T Consensus 9 CiFC~i~~~e~~~~iv~e~~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~l~~~~~~~~~~~~~~g~ni~ 88 (117)
T 3oj7_A 9 CIFCKIAQKQIPSTIVYEDDEIFAFKDINPIAPIHILVIPKQHIASLNEITEENEAFIGKVLYKVSLIGKKECPEGYRVV 88 (117)
T ss_dssp CHHHHHHTTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCCSGGGCCTTTHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred CcccccccCCCCCCEEEECCcEEEEECCCCCCCceEEEEechHhCCHHHCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 77999988888888899999999999999999999999999965555556543 233333 33333113599999
Q ss_pred Eec-CCCCCCCCeeEEEEeeCCC
Q 040147 209 YNS-LGAFATINHLHFQAYYLPL 230 (412)
Q Consensus 209 yNs-~gA~ASv~HlHfq~~~~~~ 230 (412)
+|. ..||+|++|+|+|+++...
T Consensus 89 ~n~g~~agq~v~H~H~Hiipr~~ 111 (117)
T 3oj7_A 89 NNIGEDAGQTVKHIHFHILGGKK 111 (117)
T ss_dssp CCCSTTTTCCSSSCCEEEEESSC
T ss_pred EcCCCCCCeeeeEEEEEEeCCCC
Confidence 999 8899999999999998743
No 4
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile}
Probab=99.48 E-value=2.2e-14 Score=122.11 Aligned_cols=96 Identities=19% Similarity=0.151 Sum_probs=76.1
Q ss_pred CCCCCCCCcccccEEEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHH---HHHHH----HHHHHHcC--CCCe
Q 040147 135 KFNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHE---SFLLA----LYVAKEAA--DPFF 205 (412)
Q Consensus 135 kfnF~ki~~~Eil~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~---~l~~~----~~la~~~~--~~gf 205 (412)
.+.||++..+|++..+.++++.+++++|.+|+.|||+||||+++...-..|+.+ ++..+ .++++... ..||
T Consensus 5 ~C~FC~i~~~e~~~~iv~e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (119)
T 4egu_A 5 DCIFCKIANGEIPSTKVYEDDRVLAFNDLNPVAPYHILVVPKKHYDSLIDIPDKEMDIVSHIHVVINKIAKEKGFDQTGF 84 (119)
T ss_dssp TCHHHHHHTTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCSSGGGSCGGGTHHHHHHHHHHHHHHHHHTHHHHCE
T ss_pred CccCeecccCCCCCCEEEECCCEEEEECCCCCCCceEEEEechhhCCHhHCCHhHHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence 477999988898888889999999999999999999999999965555556544 23333 33333432 4589
Q ss_pred EEEEec-CCCCCCCCeeEEEEeeCCC
Q 040147 206 RLGYNS-LGAFATINHLHFQAYYLPL 230 (412)
Q Consensus 206 rvfyNs-~gA~ASv~HlHfq~~~~~~ 230 (412)
++++|. ..||+|++|+|+|+++...
T Consensus 85 ni~~n~g~~agq~v~HlH~Hiip~~~ 110 (119)
T 4egu_A 85 RVINNCGSDGGQEVKHLHYHILAGKK 110 (119)
T ss_dssp EEEEEETTTTTCCSCSCCEEEEESSC
T ss_pred EEEEeCCCCCCCCcCEEEEEEeCCcc
Confidence 999999 8899999999999998743
No 5
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0
Probab=99.48 E-value=3.4e-14 Score=126.36 Aligned_cols=94 Identities=18% Similarity=0.225 Sum_probs=80.7
Q ss_pred CCCCCCCCcccccEEEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHHHc--------CCCCeE
Q 040147 135 KFNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEA--------ADPFFR 206 (412)
Q Consensus 135 kfnF~ki~~~Eil~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~~~--------~~~gfr 206 (412)
.+.||||..+|++..+.++++.+++++|.+|+.|||+||||+++...-..|+.+++..++.+++.+ +..||+
T Consensus 12 ~~iFc~Ii~geip~~iV~ed~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~g~n 91 (149)
T 3ksv_A 12 NCIFCKIIKGDIPCAKVAETSKALAFMDINPLSRGHMLVIPKEHASCLHELGMEDAADVGVLLAKASRAVAGPDGSMQYN 91 (149)
T ss_dssp TCHHHHHHHTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHCTTSCCEEE
T ss_pred cCHHHHHHcCCCCccEEEECCCEEEEECCCCCCCCEEEEEeChhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhhCCCCEE
Confidence 467999999999999999999999999999999999999999976666668887776666655532 356899
Q ss_pred EEEec-CCCCCCCCeeEEEEeeC
Q 040147 207 LGYNS-LGAFATINHLHFQAYYL 228 (412)
Q Consensus 207 vfyNs-~gA~ASv~HlHfq~~~~ 228 (412)
+++|. ..||++|+|+|+|++|+
T Consensus 92 i~~n~g~~aGq~v~HlHiHiiPR 114 (149)
T 3ksv_A 92 VLQNNGSLAHQEVPHVHFHIIPK 114 (149)
T ss_dssp EEECCSTTTTCCSSSCCEEEEEE
T ss_pred EEEecCcccCCCCCEEEEEEEec
Confidence 99999 88899999999999987
No 6
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str}
Probab=99.47 E-value=3.8e-14 Score=125.61 Aligned_cols=94 Identities=17% Similarity=0.143 Sum_probs=79.2
Q ss_pred CCCCCCCCcccccEEEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHHH---------cCCCCe
Q 040147 135 KFNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKE---------AADPFF 205 (412)
Q Consensus 135 kfnF~ki~~~Eil~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~~---------~~~~gf 205 (412)
.+.||++..+|++..+.++++.+++++|.+|+.|||+||||+++...-..|+.+++..++++++. ++..||
T Consensus 6 ~CiFC~i~~~e~~~~iv~e~~~~~af~d~~p~~pgh~lViPk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~ 85 (149)
T 3o0m_A 6 SCVFCAIVSGDAPAIRIYEDENFLGILDIRPFTRGHTLVIPKTHTVDLTDTPPETVAGMAAVGQRIARAARESGLHADGN 85 (149)
T ss_dssp TCHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCCSTTTSCHHHHHHHHHHHHHHHHHHHHSTTCCSEE
T ss_pred CCccCccccCCCCCCEEEECCCEEEEEcCCCCCCCeEEEEechhhCCHhHCCHHHHHHHHHHHHHHHHHHHHcCCCCCce
Confidence 37799998889988889999999999999999999999999996655566787766666554432 345699
Q ss_pred EEEEec-CCCCCCCCeeEEEEeeC
Q 040147 206 RLGYNS-LGAFATINHLHFQAYYL 228 (412)
Q Consensus 206 rvfyNs-~gA~ASv~HlHfq~~~~ 228 (412)
++++|. ..||++|+|+|+|++++
T Consensus 86 ni~~n~g~~aGq~v~HlHiHiiPR 109 (149)
T 3o0m_A 86 NIAINDGKAAFQTVFHIHLHVVPR 109 (149)
T ss_dssp EEECCCSGGGTCCSSSCCEEEEEE
T ss_pred EEEEecCCCCCCccceEEEEEECC
Confidence 999999 77899999999999987
No 7
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1
Probab=99.46 E-value=4.7e-14 Score=124.79 Aligned_cols=94 Identities=21% Similarity=0.158 Sum_probs=79.6
Q ss_pred CCCCCCCCcccccEEEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHHH--------cCCCCeE
Q 040147 135 KFNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKE--------AADPFFR 206 (412)
Q Consensus 135 kfnF~ki~~~Eil~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~~--------~~~~gfr 206 (412)
.+.||++..+|++..+.++++.+++++|.+|+.|||+||||+++......|+.+++..++.+++. .+..||+
T Consensus 10 ~CifC~i~~~e~~~~iV~e~~~~~a~~d~~p~~pgh~lViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~n 89 (147)
T 3imi_A 10 NCIFCKIIDGQILCSKVYEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPEIASHIFSVVPKIANAIKAEFNPVGFN 89 (147)
T ss_dssp GCHHHHHHTTSSCCCEEEECSSEEEEECTTCSSTTCEEEEESSCCCSGGGCCHHHHHHHHHTHHHHHHHHHHHHCCSEEE
T ss_pred CCcCcccccCCCcCCEEEECCCEEEEEcCCCCCCcEEEEEEeeccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 37799999999998899999999999999999999999999996665666788766666554432 3467999
Q ss_pred EEEec-CCCCCCCCeeEEEEeeC
Q 040147 207 LGYNS-LGAFATINHLHFQAYYL 228 (412)
Q Consensus 207 vfyNs-~gA~ASv~HlHfq~~~~ 228 (412)
+++|. ..||++|+|+|+|++|+
T Consensus 90 i~~n~g~~aGq~v~HlHiHiiPR 112 (147)
T 3imi_A 90 LLNNNGEKAGQTVFHFHLHLIPR 112 (147)
T ss_dssp EEEEESGGGTCCSSSCCEEEEEE
T ss_pred EEEeCCcccCCCcCEEEEEEeCC
Confidence 99998 88899999999999987
No 8
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae}
Probab=99.44 E-value=8.7e-14 Score=125.31 Aligned_cols=95 Identities=18% Similarity=0.171 Sum_probs=80.0
Q ss_pred CCCCCCCCCcccccEEEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHHH--------cCCCCe
Q 040147 134 NKFNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKE--------AADPFF 205 (412)
Q Consensus 134 ~kfnF~ki~~~Eil~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~~--------~~~~gf 205 (412)
..+.||++..+|++..+.++++.+++++|.+|+.|||+||||+++...-..|+++++..++++++. ++..||
T Consensus 28 ~~CiFC~i~~~e~p~~iV~e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~g~ 107 (161)
T 3lb5_A 28 NNNIFAKLIRNEIPSVRVYEDDDVIAFMDIMPQAPGHTLVIPKKGSRNLLDADTETLFPVIKAVQKIAKAVKKAFQADGI 107 (161)
T ss_dssp TTSHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCSSTTTSCHHHHHHHHHHHHHHHHHHHHHHTCSEE
T ss_pred CCCcccccccCCCCccEEEECCCEEEEECCCcCCCcEEEEEEeeccchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 348899998889998899999999999999999999999999996665566787766655554432 246799
Q ss_pred EEEEec-CCCCCCCCeeEEEEeeC
Q 040147 206 RLGYNS-LGAFATINHLHFQAYYL 228 (412)
Q Consensus 206 rvfyNs-~gA~ASv~HlHfq~~~~ 228 (412)
++++|. ..||++|+|+|+|++|+
T Consensus 108 ni~~n~g~~aGq~V~HlHiHiiPR 131 (161)
T 3lb5_A 108 TVMQFNEAASQQTVYHLHFHIIPR 131 (161)
T ss_dssp EEEEEESGGGTCCSCSCCEEEEEE
T ss_pred EEEEecCcccCCCCCEEEEEEEcc
Confidence 999998 88899999999999987
No 9
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii}
Probab=99.42 E-value=1.2e-13 Score=122.14 Aligned_cols=93 Identities=22% Similarity=0.118 Sum_probs=77.8
Q ss_pred CCCCCCcccccEEEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHHH--------cCCCCeEEE
Q 040147 137 NFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKE--------AADPFFRLG 208 (412)
Q Consensus 137 nF~ki~~~Eil~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~~--------~~~~gfrvf 208 (412)
.||++..+|++..+.++++.+++++|.+|+.|||+||||+++......|+.+++..++.+++. ++..||+++
T Consensus 2 iFC~i~~~e~~~~iv~e~~~~~a~~d~~p~~pgh~lViPk~H~~~~~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~ 81 (149)
T 2eo4_A 2 TFCSIINRELEGYFVYEDEKFAAILDKYPVSLGHTLVIPKKHFENYLEADEDTLAELAKVVKLVSLGIKDAVKADGLRLL 81 (149)
T ss_dssp HHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred cCcccccCCCCccEEEECCCEEEEECCCCCCCCeEEEEechhhCCHhHCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 478887788888888899999999999999999999999997666666888877666655542 245699999
Q ss_pred Eec-CCCCCCCCeeEEEEeeCC
Q 040147 209 YNS-LGAFATINHLHFQAYYLP 229 (412)
Q Consensus 209 yNs-~gA~ASv~HlHfq~~~~~ 229 (412)
+|. ..+|+++.|+|+|+++.-
T Consensus 82 ~n~g~~~gq~v~HlHiHviPr~ 103 (149)
T 2eo4_A 82 TNIGRSAGQVIFHLHVHIIPTW 103 (149)
T ss_dssp CCCSGGGTCCSCSCCEEEEEEC
T ss_pred EecCcCCCCCcCEEEEEEECCc
Confidence 998 778899999999999863
No 10
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans}
Probab=99.42 E-value=1.1e-13 Score=126.16 Aligned_cols=94 Identities=15% Similarity=0.058 Sum_probs=79.9
Q ss_pred CCCCCCCCcccccEEEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHHH--------cCCCCeE
Q 040147 135 KFNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKE--------AADPFFR 206 (412)
Q Consensus 135 kfnF~ki~~~Eil~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~~--------~~~~gfr 206 (412)
.+.||++..+|++..+.++++.+++++|.+|+.|||+||||+++......|+++++..+..+++. .+..||+
T Consensus 37 ~CiFC~Ii~~e~p~~iV~e~e~~~afld~~P~~pgH~LVIPkrHv~~l~dL~~ee~~~L~~~~~~v~~~l~~~~~~~g~n 116 (173)
T 3l7x_A 37 DCLFCKIVAGDIPSSKVYEDEDVLAFLDISQATKGHTLVIPKEHVRNALEMTQTQAANLFARIPKIARALQKATKADGLN 116 (173)
T ss_dssp TCHHHHHHHTSSCCCEEEECSSEEEEECTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHHHTHHHHHHHHHHHHTCSEEE
T ss_pred CCcccccccCCCCceEEEECCCEEEEEcCCCCCCcEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 48899999999998899999999999999999999999999996655566787766665544432 3467999
Q ss_pred EEEec-CCCCCCCCeeEEEEeeC
Q 040147 207 LGYNS-LGAFATINHLHFQAYYL 228 (412)
Q Consensus 207 vfyNs-~gA~ASv~HlHfq~~~~ 228 (412)
+++|. ..||++|+|+|+|++|+
T Consensus 117 i~~n~g~~aGq~V~HlHiHiIPR 139 (173)
T 3l7x_A 117 IINNNEETAGQTVFHAHVHLVPR 139 (173)
T ss_dssp EEECCSGGGTCCSCSCCEEEEEE
T ss_pred EEEecCcccCCCcCEEEEEEEec
Confidence 99999 88899999999999987
No 11
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1
Probab=99.40 E-value=1.1e-13 Score=121.52 Aligned_cols=95 Identities=16% Similarity=0.054 Sum_probs=77.8
Q ss_pred CCCCCCCCCcccccEEEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHH--------HcCCCCe
Q 040147 134 NKFNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAK--------EAADPFF 205 (412)
Q Consensus 134 ~kfnF~ki~~~Eil~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~--------~~~~~gf 205 (412)
..+.||++..+|++..+.++++.+++++|++|..|||+||||+++......|+.+++..+..+++ ..+..||
T Consensus 5 ~~C~fC~i~~~e~~~~iv~e~~~~~a~~~~~p~~pgh~LViPk~h~~~l~dL~~~~~~~l~~~~~~v~~~l~~~~~~~~~ 84 (145)
T 1y23_A 5 ENCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFEPIGL 84 (145)
T ss_dssp CCCHHHHHHHTSSCCCEEEECSSEEEEECTTCSSTTCEEEEESSCCSSGGGCCHHHHHTTTTHHHHHHHHHHHHHCCSEE
T ss_pred CCCcCCccccCCCCCCEEEECCCEEEEECCCCCCCCeEEEEEhhhhhhHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 34789999888888888889999999999999999999999999666666678776655543332 2345699
Q ss_pred EEEEec-CCCCCCCCeeEEEEeeC
Q 040147 206 RLGYNS-LGAFATINHLHFQAYYL 228 (412)
Q Consensus 206 rvfyNs-~gA~ASv~HlHfq~~~~ 228 (412)
++++|. ..+|+++.|+|+|++++
T Consensus 85 ni~~n~g~~~g~~v~HlH~HiiPr 108 (145)
T 1y23_A 85 NTLNNNGEKAGQSVFHYHMHIIPR 108 (145)
T ss_dssp EEEEEESGGGTCCSSSCCEEEEEE
T ss_pred EEEEcCCcCCCCCcCEEEEEEEcc
Confidence 999998 77889999999999986
No 12
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1
Probab=99.37 E-value=7.3e-13 Score=117.68 Aligned_cols=94 Identities=23% Similarity=0.229 Sum_probs=75.9
Q ss_pred CCCCCCCCcccccEEEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHH-------HHHHHHHHHHHcC--CCCe
Q 040147 135 KFNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHE-------SFLLALYVAKEAA--DPFF 205 (412)
Q Consensus 135 kfnF~ki~~~Eil~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~-------~l~~~~~la~~~~--~~gf 205 (412)
.+.||++..+|++..+.++++.+++++|++|+.|||+||||+++......|+.+ .+..+.++++... ..||
T Consensus 36 ~CiFC~ii~~e~~~~iV~e~e~~~af~d~~P~~pgH~LViPkrHv~~l~dL~~~e~~~l~~l~~~~~~v~~~~~~~~~gy 115 (147)
T 1xqu_A 36 NCVFCKIIKRELPSTIYYEDERVIAIKDINPAAPVHVLIIPKEHIANVKEINESNAQILIDIHKAANKVAEDLGIAEKGY 115 (147)
T ss_dssp TCHHHHHHTTSSCBCEEEECSSEEEEECSSCSSSEEEEEEESSCCSSGGGCCTTTTTHHHHHHHHHHHHHHHTTCTTTCE
T ss_pred CCcccccccCCCCcEEEEECCcEEEEEecCCCCccEEEEEeCcccCChhHCCHHHHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence 588999988898888899999999999999999999999999965555556432 2333344445544 3499
Q ss_pred EEEEec-CCCCCCCCeeEEEEeeC
Q 040147 206 RLGYNS-LGAFATINHLHFQAYYL 228 (412)
Q Consensus 206 rvfyNs-~gA~ASv~HlHfq~~~~ 228 (412)
++++|. ..||+++.|+|+|+++.
T Consensus 116 ni~~n~g~~aGq~v~HlHlHiiP~ 139 (147)
T 1xqu_A 116 RLITNCGVAAGQTVFHLHYHLLGG 139 (147)
T ss_dssp EEECCCSTTTTCCSCSCCEEEEES
T ss_pred EEEEecCcccCCCccEEEEEEeCC
Confidence 999999 88899999999999986
No 13
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis}
Probab=99.30 E-value=1.6e-12 Score=122.76 Aligned_cols=95 Identities=17% Similarity=0.131 Sum_probs=77.6
Q ss_pred CCCCCCCCcc-cccEEEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHHH--------cCCCCe
Q 040147 135 KFNFTKIGQE-EMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKE--------AADPFF 205 (412)
Q Consensus 135 kfnF~ki~~~-Eil~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~~--------~~~~gf 205 (412)
.+.||++..+ +++-.+.++++.+++++|+||+.+||+||||+++......|+.++...+.++++. ....||
T Consensus 70 ~CiFC~i~~~e~~~~~iV~edd~~~afld~~P~~pGH~LVIPkrHv~~l~dL~~ee~~~L~~l~~~v~~~l~~~~~~~g~ 149 (218)
T 3ano_A 70 AQPFTEIPQLSDEEGLVVARGKLVYAVLNLYPYNPGHLMVVPYRRVSELEDLTDLESAELMAFTQKAIRVIKNVSRPHGF 149 (218)
T ss_dssp CCHHHHGGGSCHHHHTEEEECSSEEEEECSSCSSTTCEEEEESSCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHCCCSEE
T ss_pred CCcCcccccCCCCCceEEEECCcEEEEEccCCCCCcEEEEEechhhCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 4889999776 4777778889999999999999999999999997666666887766665554442 245699
Q ss_pred EEEEec-CCCCCCC-CeeEEEEeeCC
Q 040147 206 RLGYNS-LGAFATI-NHLHFQAYYLP 229 (412)
Q Consensus 206 rvfyNs-~gA~ASv-~HlHfq~~~~~ 229 (412)
++++|. ..||++| .|+|+|+++.-
T Consensus 150 ni~~n~G~~aGq~V~~HlHiHIIPR~ 175 (218)
T 3ano_A 150 NVGLNLGTSAGGSLAEHLHVHVVPRW 175 (218)
T ss_dssp EEEEEESGGGTCTTTTSCCEEEEEEC
T ss_pred EEEEecCcccCCcccCEEEEEEEccc
Confidence 999998 7788999 99999999863
No 14
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi}
Probab=99.29 E-value=1.3e-12 Score=113.88 Aligned_cols=91 Identities=14% Similarity=0.137 Sum_probs=71.3
Q ss_pred CCCCCCCCcccccEEEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHH----HHHHHHHHHcCCCCeEEEEe
Q 040147 135 KFNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESF----LLALYVAKEAADPFFRLGYN 210 (412)
Q Consensus 135 kfnF~ki~~~Eil~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l----~~~~~la~~~~~~gfrvfyN 210 (412)
.+.||++.. ++-.+.++++.+++++|.+|+.+||+||||+++...-..|+.+++ ..+.++++.++..+|++++|
T Consensus 7 ~C~fC~i~~--~~~~iv~e~~~~~af~d~~p~~pgh~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~~~~~~~~ni~~n 84 (135)
T 3r6f_A 7 GCIFCTLYR--KGANIIYETDRLFALIDRYPLSKGHFLVIPKAHHPYLHNYKPEELSGVLDTIRHLVQKFGFERYNILQN 84 (135)
T ss_dssp CCHHHHHHH--HCCSCCEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCGGGGTTHHHHHHHHHHHHTCCSEEEECC
T ss_pred CCcCccccc--CCceEEEECCCEEEEECCCCCCCCeEEEEEhhHhCCHhHCCHHHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 367888854 455666789999999999999999999999996554445665543 44555666666779999999
Q ss_pred cCCCCCCCCeeEEEEeeC
Q 040147 211 SLGAFATINHLHFQAYYL 228 (412)
Q Consensus 211 s~gA~ASv~HlHfq~~~~ 228 (412)
... |++++|+|+|++|+
T Consensus 85 ~g~-gq~v~HlH~HiiPR 101 (135)
T 3r6f_A 85 NGN-HQEVFHVHFHVIPF 101 (135)
T ss_dssp SSS-SCSSSSCCEEEEEC
T ss_pred cCC-CCCccEEEEEEecc
Confidence 843 88999999999987
No 15
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*
Probab=99.28 E-value=4.3e-12 Score=111.84 Aligned_cols=81 Identities=15% Similarity=0.093 Sum_probs=66.1
Q ss_pred EEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHHH--------cCCCCeEEEEec-CCCCCCCC
Q 040147 149 RLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKE--------AADPFFRLGYNS-LGAFATIN 219 (412)
Q Consensus 149 ~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~~--------~~~~gfrvfyNs-~gA~ASv~ 219 (412)
.+.++++.+++++|.+|..|||+||||+++...-..|+.+++..+..+++. .+..||++++|. ..||++|.
T Consensus 14 ~iv~e~~~~~a~~d~~p~~pgh~LViPk~h~~~~~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~agq~v~ 93 (147)
T 1fit_A 14 VVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPEAGQTVK 93 (147)
T ss_dssp GEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECCSGGGTCCSS
T ss_pred EEEEECCCEEEEECCCCCCCcEEEEEEccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCccCCCcc
Confidence 345678999999999999999999999996666666788777666655443 235699999998 77899999
Q ss_pred eeEEEEeeCC
Q 040147 220 HLHFQAYYLP 229 (412)
Q Consensus 220 HlHfq~~~~~ 229 (412)
|+|+|+++..
T Consensus 94 HlH~HiiPr~ 103 (147)
T 1fit_A 94 HVHVHVLPRK 103 (147)
T ss_dssp SCCEEEEEEC
T ss_pred EEEEEEECCc
Confidence 9999999874
No 16
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=99.27 E-value=1.8e-12 Score=113.14 Aligned_cols=90 Identities=23% Similarity=0.214 Sum_probs=71.3
Q ss_pred CCCCCCCcccccEEEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHHHc--------CCCCeEE
Q 040147 136 FNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEA--------ADPFFRL 207 (412)
Q Consensus 136 fnF~ki~~~Eil~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~~~--------~~~gfrv 207 (412)
+.||++..+|++..+.++++.+++++|.+|+.|||+||||+++...-..|+.+++..++.+++.+ +..+
T Consensus 7 CiFC~i~~~e~p~~iV~e~~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~--- 83 (138)
T 3p0t_A 7 SIFTKIINRELPGRFVYEDDDVVAFLTIEPMTQGHTLVVPREEIDNWQDVDSAAFNRVMGVSQLIGKAVCKAFRTER--- 83 (138)
T ss_dssp HHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSE---
T ss_pred ChhhHHhcCCCCcCEEEeCCCEEEEecCCCCCCcEEEEEEhHHhCchhhCCHHHHHHHHHHHHHHHHHHHHhcCCCC---
Confidence 66999988999988999999999999999999999999999966555667877666666555432 3333
Q ss_pred EEecCCCCCCCCeeEEEEeeCC
Q 040147 208 GYNSLGAFATINHLHFQAYYLP 229 (412)
Q Consensus 208 fyNs~gA~ASv~HlHfq~~~~~ 229 (412)
+|...||++|+|+|+|++++-
T Consensus 84 -~n~~~~gq~v~HlH~HiiPr~ 104 (138)
T 3p0t_A 84 -SGLIIAGLEVPHLHVHVFPTR 104 (138)
T ss_dssp -EEEEECCSSCSSCCEEEEEES
T ss_pred -CcEEECCcccCEEEEEEeccc
Confidence 333357899999999999873
No 17
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=99.06 E-value=1.9e-10 Score=117.55 Aligned_cols=94 Identities=19% Similarity=0.186 Sum_probs=74.5
Q ss_pred cCCCCCCCCCcccccE-EEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHHHc--------CCC
Q 040147 133 ENKFNFTKIGQEEMLF-RLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEA--------ADP 203 (412)
Q Consensus 133 ~~kfnF~ki~~~Eil~-~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~~~--------~~~ 203 (412)
...+.||+ +|++- .+.++++.+++++|.+|..|||+||||++|...-..|+.+++..++.+++.+ +..
T Consensus 296 ~~~c~fc~---~e~p~~~iv~e~~~~~a~~~~~p~~pgh~lviPk~h~~~~~~l~~~~~~~l~~~~~~v~~~l~~~~~~~ 372 (440)
T 1ems_A 296 TGGLKFAR---FNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVT 372 (440)
T ss_dssp SSCCEETT---EECCGGGEEEECSSEEEEECSSCSSTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred cCceeeec---cccCCceEEEECCCEEEEEcCCcCCCCeEEEEEccccCChhHCCHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 34577876 46654 3567899999999999999999999999976666667877666666554422 456
Q ss_pred CeEEEEec-CCCCCCCCeeEEEEeeCC
Q 040147 204 FFRLGYNS-LGAFATINHLHFQAYYLP 229 (412)
Q Consensus 204 gfrvfyNs-~gA~ASv~HlHfq~~~~~ 229 (412)
||++++|. ..||++|+|+|+|+++.-
T Consensus 373 ~~n~~~~~g~~~gq~v~HlH~Hiipr~ 399 (440)
T 1ems_A 373 STTICVQDGKDAGQTVPHVHIHILPRR 399 (440)
T ss_dssp EEEEECCCSGGGTCCSSSCCEEEEEEC
T ss_pred CeEEEEecCCCCCCCccEEEEEEeCCC
Confidence 99999998 788999999999999863
No 18
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1
Probab=99.03 E-value=4.4e-10 Score=99.76 Aligned_cols=87 Identities=8% Similarity=-0.135 Sum_probs=65.6
Q ss_pred CCCCCCCCcccccEEEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHHH--------cCCCCeE
Q 040147 135 KFNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKE--------AADPFFR 206 (412)
Q Consensus 135 kfnF~ki~~~Eil~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~~--------~~~~gfr 206 (412)
.+.||+..+ -.+.++++.++++++++|..|||+||||+++...-..|+.++...+.++++. .+..||+
T Consensus 11 ~C~FC~~~~----~~iv~e~~~~~a~~d~~p~~pgh~LViPk~H~~~l~dL~~~~~~~l~~~~~~v~~~l~~~~~~~g~n 86 (154)
T 2oik_A 11 NCELCTTAG----GEILWQDALCRVVHVENQDYPGFCRVILNRHVKEMSDLRPAERDHLMLVVFAVEEAVREVMRPDKIN 86 (154)
T ss_dssp TCHHHHSCC----SEEEEECSSEEEEECCCTTCTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEE
T ss_pred CCccCCCCC----CeEEEECCcEEEEEcCCCCCCeEEEEEecCCcCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 377887543 3556789999999999999999999999997666666887766555544432 2345665
Q ss_pred EEEecCCCCCCCCeeEEEEeeCC
Q 040147 207 LGYNSLGAFATINHLHFQAYYLP 229 (412)
Q Consensus 207 vfyNs~gA~ASv~HlHfq~~~~~ 229 (412)
+. .+|+++.|+|+|+++..
T Consensus 87 i~----~~gq~v~HlHiHiiPr~ 105 (154)
T 2oik_A 87 LA----SLGNMTPHVHWHVIPRF 105 (154)
T ss_dssp EE----ECCSSSCSCEEEEEEEC
T ss_pred hH----HhCCCCCEEEEEEeCCC
Confidence 54 46789999999999874
No 19
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Probab=98.88 E-value=4.3e-09 Score=105.64 Aligned_cols=91 Identities=13% Similarity=0.046 Sum_probs=73.1
Q ss_pred CCCCCCCCcccccEEEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHH--------HcCCCCeE
Q 040147 135 KFNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAK--------EAADPFFR 206 (412)
Q Consensus 135 kfnF~ki~~~Eil~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~--------~~~~~gfr 206 (412)
.+.||++..+|+ +.++++.++++++.+|..|+|+||||+++......|+.++...+.++++ .++.+||+
T Consensus 215 ~ciFc~ii~~E~---iV~E~e~~~af~~~~p~~P~h~lViPk~Hv~~l~dl~~~e~~~La~~l~~v~~~l~~~~~~~~yn 291 (351)
T 1z84_A 215 KCCLCEAKSKHF---VIDESSHFVSVAPFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLNDPPYN 291 (351)
T ss_dssp SCTTTTHHHHSE---EEEECSSEEEEECTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHTTSCCEE
T ss_pred CCHHHHHHhcCe---EEecCCcEEEEeccCCCCCeEEEEEeccccCChHHCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 488999988887 6778999999999999999999999999766666677765554444433 33456999
Q ss_pred EEEec-CCCC----CCCCeeEEEEeeC
Q 040147 207 LGYNS-LGAF----ATINHLHFQAYYL 228 (412)
Q Consensus 207 vfyNs-~gA~----ASv~HlHfq~~~~ 228 (412)
+++|. ..++ +++.|+|+|+++.
T Consensus 292 ~~~n~gp~~g~~~~q~v~HlHiHiiPR 318 (351)
T 1z84_A 292 YMIHTSPLKVTESQLPYTHWFLQIVPQ 318 (351)
T ss_dssp EEEECCCTTCCGGGGGGCCCEEEEEEC
T ss_pred EEEeCCCccCCCCCCccceEEEEEEcc
Confidence 99999 5554 5889999999985
No 20
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Probab=98.87 E-value=1.6e-09 Score=108.50 Aligned_cols=94 Identities=13% Similarity=-0.010 Sum_probs=74.8
Q ss_pred CCCCCCCCCcccccE--EEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHH--------HcCCC
Q 040147 134 NKFNFTKIGQEEMLF--RLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAK--------EAADP 203 (412)
Q Consensus 134 ~kfnF~ki~~~Eil~--~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~--------~~~~~ 203 (412)
..+.||++..+|+.. .+.++++.++++++.+|..|||+||||+++......|+.++...+.++++ ..+.+
T Consensus 194 ~~Cifc~ii~~E~~~~~~iV~E~e~~~af~~~~p~~pgh~lViPK~Hv~~l~dL~~~e~~~La~~l~~v~~~l~~~~~~~ 273 (348)
T 1gup_A 194 KSPMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCS 273 (348)
T ss_dssp SSCHHHHHHHHHHHHCTTEEEECSSEEEECCTTCCSTTCEEEEESSCCSSGGGCCHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCCchhHHHhhccccCceEEEeCCcEEEEEccCCCCceEEEEEeCcccCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 348899998888876 77888999999999999999999999999776666688776655544332 23444
Q ss_pred -CeEEEEec-C--CCCCCCCeeEEEEee
Q 040147 204 -FFRLGYNS-L--GAFATINHLHFQAYY 227 (412)
Q Consensus 204 -gfrvfyNs-~--gA~ASv~HlHfq~~~ 227 (412)
+|++++|. . |+++++.|+|+|+++
T Consensus 274 ~~Yn~g~~~~p~~g~~q~v~HlHiHiiP 301 (348)
T 1gup_A 274 FPYSMGWHGAPFNGEENQHWQLHAHFYP 301 (348)
T ss_dssp CCEEEEEECCCSSSSCCTTCCCEEEEEC
T ss_pred CCeEEEEEeCCCCCCCCcccEEEEEEec
Confidence 89999998 3 345789999999998
No 21
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=98.80 E-value=1e-08 Score=89.83 Aligned_cols=75 Identities=9% Similarity=-0.122 Sum_probs=54.3
Q ss_pred ecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHH----HHH----HcCCCCeEEEEecCCCCCCCCeeE
Q 040147 151 DDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALY----VAK----EAADPFFRLGYNSLGAFATINHLH 222 (412)
Q Consensus 151 ~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~----la~----~~~~~gfrvfyNs~gA~ASv~HlH 222 (412)
..+++.+.+++|.+|+.|||+||+|+++...-..|+.++...++. +++ ..+..|+ |...||++|+|+|
T Consensus 16 v~~~~~~~v~l~~~p~~pGh~lV~~k~h~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~----N~~~aGq~V~HlH 91 (137)
T 3ohe_A 16 LGESRLCDVLLMNDNTWPWVILVPRVSGIREIYELPNEQQQRLLFESSALSEGMMELFGGDKM----NVAALGNMVPQLH 91 (137)
T ss_dssp EEECSSEEEEEESCTTSCEEEEEESCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEE----EEEECCSSCCSCC
T ss_pred EEECCcEEEEEcCCCCCCEEEEEecccccCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCeE----EEeeccCcCCEEE
Confidence 345788999999999999999888888555555577765443332 222 3344454 4448899999999
Q ss_pred EEEeeCC
Q 040147 223 FQAYYLP 229 (412)
Q Consensus 223 fq~~~~~ 229 (412)
+|++++-
T Consensus 92 ~HviPR~ 98 (137)
T 3ohe_A 92 LHHIVRY 98 (137)
T ss_dssp EEEEEEC
T ss_pred EEEeCCC
Confidence 9999873
No 22
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=98.72 E-value=2.5e-08 Score=88.65 Aligned_cols=75 Identities=9% Similarity=-0.138 Sum_probs=54.2
Q ss_pred ecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHH----H----HcCCCCeEEEEecCCCCCCCCeeE
Q 040147 151 DDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVA----K----EAADPFFRLGYNSLGAFATINHLH 222 (412)
Q Consensus 151 ~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la----~----~~~~~gfrvfyNs~gA~ASv~HlH 222 (412)
..+++.+.+++|.+|+.|||+||+|+++...-..|++++...++..+ + ..+..| +|...||++|+|+|
T Consensus 16 v~~~~~~~v~L~~~p~~pGh~LV~pk~Hv~~l~dL~~e~~~~l~~~~~~va~al~~~~~~~~----~Ni~~aGq~V~HlH 91 (149)
T 3i24_A 16 LGNLPLCKVLLIKEDIGPWLILVPRIEELKEIHHMTDEQQIQFIKESSAVAQLLEDNFSPDK----INIGALGNLVPQLH 91 (149)
T ss_dssp EEECSSEEEEEECBSSTTEEEEEESCTTCSSGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSE----EEEEECCSSCCSCC
T ss_pred EEECCCEEEEEcCCCCCCEEEEEeCccccCChhHCCHHHHHHHHHHHHHHHHHHHHhhCCCe----EEEhhhhCCCCEEE
Confidence 34578899999999999999999988755555557776544333222 2 234445 45546899999999
Q ss_pred EEEeeCC
Q 040147 223 FQAYYLP 229 (412)
Q Consensus 223 fq~~~~~ 229 (412)
+|++++-
T Consensus 92 ~HvIPR~ 98 (149)
T 3i24_A 92 IHHIARF 98 (149)
T ss_dssp EEEEEEC
T ss_pred EEEeCCc
Confidence 9999873
No 23
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Probab=98.59 E-value=2.6e-08 Score=92.97 Aligned_cols=76 Identities=16% Similarity=0.231 Sum_probs=51.6
Q ss_pred EecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCH--------HHHHHHHHHHH-H---------------c-CCC-
Q 040147 150 LDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDH--------ESFLLALYVAK-E---------------A-ADP- 203 (412)
Q Consensus 150 ~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~--------~~l~~~~~la~-~---------------~-~~~- 203 (412)
+.++++.++++.|++|+++||+||||+.+ ....... ..+..+..+|. . . +..
T Consensus 23 ~v~edd~~~af~D~~P~a~~H~LVIPk~h--~~~~~~p~~al~d~~~Ll~~m~~la~~~~l~~~~~~~~~~~~~~~~~~~ 100 (204)
T 3sp4_A 23 VIYYDDDVVLVRDMFPKSKMHLLLMTRDP--HLTHVHPLEIMMKHRSLVEKLVSYVQGDLSGLIFDEARNCLSQQLTNEA 100 (204)
T ss_dssp EEEECSSEEEEECSSCSSSSEEEEEECCT--TTTTSCHHHHHHHCHHHHHHHHHHHHTTTHHHHHHHHHHHSCTTCCHHH
T ss_pred EEEEcCCEEEEeCCCCCCCccEEEEeccc--cCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCcCC
Confidence 55679999999999999999999999994 4443321 12333333333 1 1 112
Q ss_pred ---CeEEEEecCCCCCCCCeeEEEEeeCCC
Q 040147 204 ---FFRLGYNSLGAFATINHLHFQAYYLPL 230 (412)
Q Consensus 204 ---gfrvfyNs~gA~ASv~HlHfq~~~~~~ 230 (412)
.+++||- |+.|++|||+|++-.+.
T Consensus 101 ~~~~i~~GfH---a~PSm~HLHLHVIS~Df 127 (204)
T 3sp4_A 101 LCNYIKVGFH---AGPSMNNLHLHIMTLDH 127 (204)
T ss_dssp HHTTEEEEEE---SSCSSSSCCEEEEESCC
T ss_pred eeeeEeccCC---CCCcccceeEEEeccCC
Confidence 3555555 45699999999998854
No 24
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti}
Probab=98.49 E-value=3.2e-07 Score=79.96 Aligned_cols=73 Identities=7% Similarity=-0.099 Sum_probs=50.1
Q ss_pred ecCCCcEEEEEcCCCCCCceEEEeec-cccCcccccCHHHHHHHHHHHH--------HcCCCCeEEEEecCCCCCCCCee
Q 040147 151 DDSKSPSVVAINVSPIEYGHVLLIPR-VLDCLPQRIDHESFLLALYVAK--------EAADPFFRLGYNSLGAFATINHL 221 (412)
Q Consensus 151 ~~~~~~~~vllN~~Pi~~~H~LlVP~-~~~~~pq~l~~~~l~~~~~la~--------~~~~~gfrvfyNs~gA~ASv~Hl 221 (412)
..+.+.+.+++|.+|..||| ||||+ ++...-..|+.++...++..+. ..+..|+ |...||++|+|+
T Consensus 18 v~~~~~~~v~l~~~~~~p~~-lvVpkr~h~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~----N~~~aGq~V~Hl 92 (135)
T 3nrd_A 18 IGTLGLCQMRLMNDRRWPWL-ILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKI----NIGALGNIVRQL 92 (135)
T ss_dssp EEECSSEEEEEESCTTSCEE-EEEECCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEE----EEEECCSSCCSC
T ss_pred EEECCcEEEEEcCCCCCCEE-EEEcCccccCChHHCCHHHHHHHHHHHHHHHHHHHHhcCCCeE----EEeeccCCCCEE
Confidence 34577899999999999965 58898 5444444566665433333222 2334454 555789999999
Q ss_pred EEEEeeC
Q 040147 222 HFQAYYL 228 (412)
Q Consensus 222 Hfq~~~~ 228 (412)
|+|++++
T Consensus 93 H~HviPR 99 (135)
T 3nrd_A 93 HVHVIAR 99 (135)
T ss_dssp CEEEEEE
T ss_pred EEEEecC
Confidence 9999987
No 25
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Probab=98.36 E-value=3.8e-05 Score=76.92 Aligned_cols=124 Identities=22% Similarity=0.195 Sum_probs=76.8
Q ss_pred EEEEccccccccccchhhhccc-ccccCcCCCCCCCCCc----ccccEEEec--CCCcEEEEEcCCCCCC----------
Q 040147 106 IAQLNEGRHLKKRATEFRIDQV-LQSFDENKFNFTKIGQ----EEMLFRLDD--SKSPSVVAINVSPIEY---------- 168 (412)
Q Consensus 106 vvQlNp~R~~kkrpt~~~id~~-~~pf~~~kfnF~ki~~----~Eil~~~~~--~~~~~~vllN~~Pi~~---------- 168 (412)
.|-++|.|. |||......+. ..+.....+.||+-.. .|+.. +.. .+-...|+.|+||...
T Consensus 34 wv~vs~~R~--~RP~~~~~~~~~~~~~~~~~CpfCpg~~~~t~~e~~~-~~~~~~~~~~~v~~N~fP~l~~~~~~~~~~~ 110 (351)
T 1z84_A 34 WVIFSPARA--KRPTDFKSKSPQNPNPKPSSCPFCIGREQECAPELFR-VPDHDPNWKLRVIENLYPALSRNLETQSTQP 110 (351)
T ss_dssp EEEECC------CGGGCCCCCC-------CCCTTSTTCGGGSSCEEEE-ESTTCSSCSEEEEECSSCSSBGGGTTTC---
T ss_pred EEEEeCCCC--CCCCCCcccccccccCCCCCCcCCCCCcccCCccccc-ccccCCCceEEEEcCCCccccCCCCCccccc
Confidence 455678887 37776543221 0111222477887532 22222 222 2346899999999993
Q ss_pred --c-----------eEEEeeccccCcccccCHHHHHHHHHHHHH----c----CCCCeEEEEec-CCCCCCCCeeEEEEe
Q 040147 169 --G-----------HVLLIPRVLDCLPQRIDHESFLLALYVAKE----A----ADPFFRLGYNS-LGAFATINHLHFQAY 226 (412)
Q Consensus 169 --~-----------H~LlVP~~~~~~pq~l~~~~l~~~~~la~~----~----~~~gfrvfyNs-~gA~ASv~HlHfq~~ 226 (412)
| ++++.+..|......|+.+.+..++++..+ + .-.++.+|-|- ..||||+.|.|.|++
T Consensus 111 ~~~l~~~~~~~G~~~Vii~sp~H~~~l~~ls~~e~~~vi~~~~~~~~~L~~~~~~~yv~iF~N~G~~aGaSl~HpH~QI~ 190 (351)
T 1z84_A 111 ETGTSRTIVGFGFHDVVIESPVHSIQLSDIDPVGIGDILIAYKKRINQIAQHDSINYIQVFKNQGASAGASMSHSHSQMM 190 (351)
T ss_dssp -----CEEECBCEEEEEECCSSSSCCGGGSCHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEEEESGGGTCCCSSCEEEEE
T ss_pred ccchhhccccCcceEEEEeCCCCCCCcHHCCHHHHHHHHHHHHHHHHHHhcccCCCEEEEEEEcCcccCCCCcCccceeE
Confidence 4 777777776666667888877776655442 2 13488899999 999999999999999
Q ss_pred eCCCCCC
Q 040147 227 YLPLPFP 233 (412)
Q Consensus 227 ~~~~~lP 233 (412)
-.+. +|
T Consensus 191 a~~~-~p 196 (351)
T 1z84_A 191 ALPV-VP 196 (351)
T ss_dssp EESS-CC
T ss_pred ecCc-CC
Confidence 8776 44
No 26
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum}
Probab=98.26 E-value=2.3e-06 Score=75.95 Aligned_cols=71 Identities=15% Similarity=0.040 Sum_probs=49.7
Q ss_pred CCCcEEEEEcCCCCCCceEEEeecc-ccCcccccCHHHHHHHHHHHH----H----cCCCCeEEEEecCCCCCCCCeeEE
Q 040147 153 SKSPSVVAINVSPIEYGHVLLIPRV-LDCLPQRIDHESFLLALYVAK----E----AADPFFRLGYNSLGAFATINHLHF 223 (412)
Q Consensus 153 ~~~~~~vllN~~Pi~~~H~LlVP~~-~~~~pq~l~~~~l~~~~~la~----~----~~~~gfrvfyNs~gA~ASv~HlHf 223 (412)
+.+...|++|.. ..++|+||||++ +...-..|+.+++..++.++. . .+..| ||...||++|+|+|+
T Consensus 23 e~p~~~v~l~~~-~~~~H~LVIPk~~H~~~l~dL~~e~~~~l~~~~~~va~~l~~~~~~~g----~N~~~aGq~V~HlH~ 97 (149)
T 3i4s_A 23 DLPLSKVLVIKD-ANYPWLLLVPRRPDAVEIIDLDEVQQAQLMTEISRVSRALKEITKCDK----LNIAALGNLVPQLHV 97 (149)
T ss_dssp ECSSEEEEEESC-TTSCEEEEEECCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSE----EEEEECCSSCCSCCE
T ss_pred EcCceEEEECCC-CCCCEEEEEecccccCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCe----EEEeecCCcCCEEEE
Confidence 356677888854 467799999999 555555677776555544333 2 23334 566688999999999
Q ss_pred EEeeC
Q 040147 224 QAYYL 228 (412)
Q Consensus 224 q~~~~ 228 (412)
|++++
T Consensus 98 HvIPR 102 (149)
T 3i4s_A 98 HIIAR 102 (149)
T ss_dssp EEEEE
T ss_pred EEECC
Confidence 99987
No 27
>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A*
Probab=95.58 E-value=0.066 Score=52.48 Aligned_cols=88 Identities=14% Similarity=0.091 Sum_probs=59.1
Q ss_pred CCCcccccEEEecCCCcEEEEEcCC----CCCCceEEEeeccc-cCcccccCHH-------HHHHHHHHHHHc---CCCC
Q 040147 140 KIGQEEMLFRLDDSKSPSVVAINVS----PIEYGHVLLIPRVL-DCLPQRIDHE-------SFLLALYVAKEA---ADPF 204 (412)
Q Consensus 140 ki~~~Eil~~~~~~~~~~~vllN~~----Pi~~~H~LlVP~~~-~~~pq~l~~~-------~l~~~~~la~~~---~~~g 204 (412)
+-+++.++++-+.....++++-+.. |+..-|+|.||++. ..-...|+.+ +...+.+++.+. +...
T Consensus 147 ~~E~e~ilyeD~d~~~gFvllpDlkWd~~~~~~lhlLaI~~~~~I~SlrdL~~~HlpLL~~M~~~~~~~i~~~y~~~~~~ 226 (301)
T 3bl9_A 147 KAEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILHQGQEAILQRYRMKGDH 226 (301)
T ss_dssp SSSGGGCCEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred CCccccEEEecCCCCcCEEEeccCccCCCcccccEEEEEecccCCCChHHCCHhHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 3355667776654456699999877 99999999999984 1222234433 233334444432 3457
Q ss_pred eEEEEecCCCCCCCCeeEEEEeeCCC
Q 040147 205 FRLGYNSLGAFATINHLHFQAYYLPL 230 (412)
Q Consensus 205 frvfyNs~gA~ASv~HlHfq~~~~~~ 230 (412)
+|+||--.- |..|+|+|++....
T Consensus 227 ~rlgfHy~P---S~yHLHlHvis~~~ 249 (301)
T 3bl9_A 227 LRVYLHYLP---SYYHLHVHFTALGF 249 (301)
T ss_dssp EEEEEESSC---SSSSCEEEEEETTS
T ss_pred eEEEecCCC---CcceEEEEEEecCC
Confidence 999999833 68899999998754
No 28
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B*
Probab=95.19 E-value=0.088 Score=52.48 Aligned_cols=87 Identities=13% Similarity=0.064 Sum_probs=56.9
Q ss_pred CCcccccEEEecCCCcEEEEEcCC----CCCCceEEEeeccc-cCcccccCHH-------HHHHHHHHHHHc---CCCCe
Q 040147 141 IGQEEMLFRLDDSKSPSVVAINVS----PIEYGHVLLIPRVL-DCLPQRIDHE-------SFLLALYVAKEA---ADPFF 205 (412)
Q Consensus 141 i~~~Eil~~~~~~~~~~~vllN~~----Pi~~~H~LlVP~~~-~~~pq~l~~~-------~l~~~~~la~~~---~~~gf 205 (412)
-+++.++++-+.....++++-+.. |+..-|+|.||++. ..-.-.|+.+ +...+.+++.+. ....+
T Consensus 195 ~E~e~vlyeD~d~~~gFvllpDlKWd~~~~~~lhlLaI~~~~dI~SlRdL~~~HlpLL~~M~~~~~~ii~~~yg~~~~~l 274 (350)
T 1vlr_A 195 AEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILREGQEAILKRYQVTGDRL 274 (350)
T ss_dssp ---CCCSEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHHHCCCGGGE
T ss_pred CccccEEEecCCCCCCeEEeccCccCCCccccceEEEEecccCCCChHHCCHhHHHHHHHHHHHHHHHHHHhcCCChHHe
Confidence 345567776654456699999877 99999999999984 1222235433 233334444432 24579
Q ss_pred EEEEecCCCCCCCCeeEEEEeeCCC
Q 040147 206 RLGYNSLGAFATINHLHFQAYYLPL 230 (412)
Q Consensus 206 rvfyNs~gA~ASv~HlHfq~~~~~~ 230 (412)
|+||--.- |..|+|+|++....
T Consensus 275 RlgfHy~P---S~yHLHlHvis~~~ 296 (350)
T 1vlr_A 275 RVYLHYLP---SYYHLHVHFTALGF 296 (350)
T ss_dssp EEEEESSC---SSSSCEEEEEETTS
T ss_pred EEEecCCC---CcceEEEEEEeccC
Confidence 99999833 68899999998754
No 29
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Probab=94.23 E-value=0.25 Score=48.99 Aligned_cols=122 Identities=11% Similarity=-0.037 Sum_probs=69.4
Q ss_pred EEEEccccccccccchhhhcccc----cccCcCCCCCCCCCcccccEEEecCCCcEEEEEcCCCCCCc------------
Q 040147 106 IAQLNEGRHLKKRATEFRIDQVL----QSFDENKFNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYG------------ 169 (412)
Q Consensus 106 vvQlNp~R~~kkrpt~~~id~~~----~pf~~~kfnF~ki~~~Eil~~~~~~~~~~~vllN~~Pi~~~------------ 169 (412)
.|-++|.|. |||..++..+.. .+.++ .+-||+-..+. .-.....-+...|+-|+||....
T Consensus 21 wv~vs~~R~--~RP~~~~~~~~~~~~~p~~~~-~CpfCpg~~~~-t~~~~p~~~~~~v~~N~fpal~~~~~~~~~~~~~l 96 (348)
T 1gup_A 21 WILVSPHRA--KRPWQGAQETPAKQVLPAHDP-DCFLCAGNVRV-TGDKNPDYTGTYVFTNDFAALMSDTPDAPESHDPL 96 (348)
T ss_dssp EEEECTTGG--GSCCCSCCCCCCCSCCCSCCT-TCTTSTTCBCT-TSCBCCCCSSCEEEECTTCSCCTTCCCCCCCCCSS
T ss_pred EEEEeCCCC--CCCCCCccccccccCCCCCCC-CCCCCCCCccc-CCCCCCCCceEEEecCCCceeccCCCCccccCccc
Confidence 455689888 377765433221 23332 37787653221 10001111126799999998831
Q ss_pred ---------eEEEeeccccCc--ccccCHHHHHHHHHHHH----HcC--CCCeEEEEec-CCCCCCCCeeEEEEeeCCCC
Q 040147 170 ---------HVLLIPRVLDCL--PQRIDHESFLLALYVAK----EAA--DPFFRLGYNS-LGAFATINHLHFQAYYLPLP 231 (412)
Q Consensus 170 ---------H~LlVP~~~~~~--pq~l~~~~l~~~~~la~----~~~--~~gfrvfyNs-~gA~ASv~HlHfq~~~~~~~ 231 (412)
|-+||=.. .|. ...|+.+.+..++++.. ++. -...-+|=|- ..||||..|-|-|++-.+.
T Consensus 97 ~~~~~~~G~~~VIi~sp-~H~~~l~~l~~~~~~~vi~~~~~r~~~l~~~~~yV~iF~N~G~~~G~Sl~HpH~Qi~a~~~- 174 (348)
T 1gup_A 97 MRCQSARGTSRVICFSP-DHSKTLPELSVAALTEIVKTWQEQTAELGKTYPWVQVFENKGAAMGCSNPHPGGQIWANSF- 174 (348)
T ss_dssp SCEEECCEEEEEEESCS-CTTCCGGGSCHHHHHHHHHHHHHHHHHHHHHCSEEEEEEEESGGGTCSCCSSEEEEEEESS-
T ss_pred eecCccceeEEEEEcCC-cccCChhhCCHHHHHHHHHHHHHHHHHHhhcCCEEEEecccCCcCCcCCCCCceeEEeccc-
Confidence 34333332 343 34467666655554432 111 2355588888 9999999999999998766
Q ss_pred CC
Q 040147 232 FP 233 (412)
Q Consensus 232 lP 233 (412)
+|
T Consensus 175 ~p 176 (348)
T 1gup_A 175 LP 176 (348)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 30
>2pof_A CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM02611, PSI-2, phospholipid biosynthesis structural genomics, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.13.1.4
Probab=91.06 E-value=0.19 Score=47.23 Aligned_cols=72 Identities=25% Similarity=0.187 Sum_probs=49.4
Q ss_pred CCcEEEEEcCCCCCCceEEEeeccc---cCccccc---CHHHHHHHHHH----HHHc----CCCCeEEEEecCCCCCCCC
Q 040147 154 KSPSVVAINVSPIEYGHVLLIPRVL---DCLPQRI---DHESFLLALYV----AKEA----ADPFFRLGYNSLGAFATIN 219 (412)
Q Consensus 154 ~~~~~vllN~~Pi~~~H~LlVP~~~---~~~pq~l---~~~~l~~~~~l----a~~~----~~~gfrvfyNs~gA~ASv~ 219 (412)
...++|+-+ +..+.|+||||..- ..-|+.+ +++-|..++.. +... .+..+-+..||..+- |+|
T Consensus 37 ~~gyvvlKD--~~Gp~qyLLmPt~rItGIEsP~Ll~~~~pnYf~~AW~aR~~v~~~~g~pipd~~lsLaINS~~gR-SQn 113 (227)
T 2pof_A 37 NAGYVVLKD--LNGPLQYLLMPTYRINGTESPLLTDPSTPNFFWLAWQARDFMSKKYGQPVPDRAVSLAINSRTGR-TQN 113 (227)
T ss_dssp TTTEEEEEC--SSSSSCEEEEESSCCCSTTCGGGGSTTSCCHHHHHHHTTHHHHHHHTSCCCGGGEEEEEBCGGGC-SCC
T ss_pred CCCEEEEeC--CCCCceEEEeccccccCccChhhcCCCCCcHHHHHHHHhHHHHHhhCCCCCccceEEEecCCCCc-ccc
Confidence 567888888 77999999999653 2234445 34556666543 3333 245788999994432 689
Q ss_pred eeEEEEeeC
Q 040147 220 HLHFQAYYL 228 (412)
Q Consensus 220 HlHfq~~~~ 228 (412)
|||.|+-.+
T Consensus 114 QLHIHIsCl 122 (227)
T 2pof_A 114 HFHIHISCI 122 (227)
T ss_dssp SCCEEEEEB
T ss_pred ceeeehhhC
Confidence 999999665
No 31
>2acm_B Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=22.44 E-value=33 Score=25.17 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=21.3
Q ss_pred HHHHHHHHHHcCCceecccceeEEEeCCceEEEEE
Q 040147 74 LLGQWEDRMNRGLFRYDVTSCETKIIPGEYGFIAQ 108 (412)
Q Consensus 74 ll~~We~a~~~G~fry~l~~~~tK~~~g~~~fvvQ 108 (412)
.+.+|.+.......+|+|+.....+.+-.+.|.+|
T Consensus 20 vk~qf~q~~~~a~~~YnL~IS~vsV~dv~FPsSaq 54 (55)
T 2acm_B 20 VETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQ 54 (55)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEEECC-------
T ss_pred hhhhhhhhhhhccccccceecceeEEeccCCCcCC
Confidence 77888886666567799988777776666677766
Done!