BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040148
(88 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M081|SC24B_ARATH Protein transport protein Sec24-like At4g32640 OS=Arabidopsis
thaliana GN=At4g32640 PE=1 SV=3
Length = 1080
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 58/70 (82%), Gaps = 1/70 (1%)
Query: 17 QQYDNPLSKKFNDVVNEMRRERCSYLRPRSCQEGDLSGM-FSSKMIEDKNPNGPSYFEFL 75
QQYDN LSKKFND VNE+RR+RCSYLR + C++G+ SGM F S M+ED+ +GPSY EFL
Sbjct: 1009 QQYDNQLSKKFNDAVNEIRRQRCSYLRIKLCKKGEPSGMLFLSYMVEDRTASGPSYVEFL 1068
Query: 76 VQIHREIQKK 85
VQ+HR+IQ K
Sbjct: 1069 VQVHRQIQLK 1078
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 14/16 (87%), Positives = 14/16 (87%)
Query: 2 DRGNCSPRYMRCTIGQ 17
D GNCSPRYMRCTI Q
Sbjct: 370 DTGNCSPRYMRCTINQ 385
>sp|Q9M291|SC24C_ARATH Protein transport protein Sec24-like CEF OS=Arabidopsis thaliana
GN=CEF PE=1 SV=3
Length = 1096
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 55/71 (77%), Gaps = 2/71 (2%)
Query: 17 QQYDNPLSKKFNDVVNEMRRERCSYLRPRSCQEGDLSG--MFSSKMIEDKNPNGPSYFEF 74
Q+YDN LSKKFNDVVNE+RR+R SYLR + C++GD +G +F S M+ED+ G SY +F
Sbjct: 1024 QKYDNQLSKKFNDVVNEIRRQRSSYLRIKLCKKGDPAGNMLFQSYMVEDRGSGGASYVDF 1083
Query: 75 LVQIHREIQKK 85
LV +HR+IQ K
Sbjct: 1084 LVSVHRQIQHK 1094
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/16 (81%), Positives = 13/16 (81%)
Query: 2 DRGNCSPRYMRCTIGQ 17
D GN SPRYMRCTI Q
Sbjct: 373 DTGNSSPRYMRCTINQ 388
>sp|P53992|SC24C_HUMAN Protein transport protein Sec24C OS=Homo sapiens GN=SEC24C PE=1 SV=3
Length = 1094
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 20 DNPLSKKFNDVVNEMRRERCSYLRPRSC-QEGDLSGMFSSKMIEDKN-PNGPSYFEFLVQ 77
DNPLSKK +++ +R +R Y++ QE + +F ++EDK+ G SY +FL
Sbjct: 1025 DNPLSKKVRGLIDSLRAQRSRYMKLTVVKQEDKMEMLFKHFLVEDKSLSGGASYVDFLCH 1084
Query: 78 IHREIQK 84
+H+EI++
Sbjct: 1085 MHKEIRQ 1091
>sp|Q9UUI5|SEC24_SCHPO Protein transport protein sec24 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sec24 PE=2 SV=1
Length = 926
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 20 DNPLSKKFNDVVNEMRR-ERCSYLRP-----RSCQEGDLSGMFSSKMIEDKNPNGPSYFE 73
DNPL+ + N ++ ++R ++ S + P R + L F S +ED++ N PSY +
Sbjct: 856 DNPLNVRINAILGKLRSLDKGSTIMPSLYLVRGDGDPQLRSWFFSHFVEDRSENSPSYLQ 915
Query: 74 FLVQIHREIQ 83
FL + +++
Sbjct: 916 FLQTLKEKVR 925
>sp|Q54U61|SEC24_DICDI Protein transport protein SEC24 OS=Dictyostelium discoideum GN=sec24
PE=3 SV=1
Length = 1013
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 20 DNPLSKKFNDVVNEMRRERCSYLRPRSCQEGDLS--GMFSSKMIEDKNPNGPSYFEFLVQ 77
DN S+ V+ +R YL+ + D F S +IED+ P G SY+EF++Q
Sbjct: 946 DNDHSRYARKVIELVRNSYPEYLKMFVVKSTDRQRRPEFQSLLIEDRTPEGCSYYEFIIQ 1005
Query: 78 IHREIQK 84
+ I +
Sbjct: 1006 LQSRITQ 1012
>sp|P19204|CASQ2_CHICK Calsequestrin-2 OS=Gallus gallus GN=CASQ2 PE=1 SV=1
Length = 406
Score = 32.7 bits (73), Expect = 0.66, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 20 DNPLSKK-FNDVVNEMRRERCSYLRPR---SCQEGDLSGMFSSKMIEDKNPNGPSYFEFL 75
D P +++ + V E +R LRP E D+ G+ E+ +P+G + E L
Sbjct: 229 DKPYTEEELVEFVKEHKRATLRKLRPEDMFETWEDDMEGIHIVAFAEEDDPDGFEFLEIL 288
Query: 76 VQIHREIQKKPSL 88
Q+ R+ P L
Sbjct: 289 KQVARDNTDNPDL 301
>sp|P12637|CASQ2_CANFA Calsequestrin-2 OS=Canis familiaris GN=CASQ2 PE=1 SV=1
Length = 410
Score = 32.7 bits (73), Expect = 0.66, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 20 DNPLSKK-FNDVVNEMRRERCSYLRPR---SCQEGDLSGMFSSKMIEDKNPNGPSYFEFL 75
D P +++ + V E +R LRP E DL+G+ E +P+G + E L
Sbjct: 229 DKPYTEEELVEFVKEHQRPTLRRLRPEDMFETWEDDLNGIHIVAFAERSDPDGYEFLEIL 288
Query: 76 VQIHREIQKKPSL 88
Q+ R+ P L
Sbjct: 289 KQVARDNTDNPDL 301
>sp|Q5RAN9|CASQ2_PONAB Calsequestrin-2 OS=Pongo abelii GN=CASQ2 PE=2 SV=1
Length = 400
Score = 32.7 bits (73), Expect = 0.73, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 29 DVVNEMRRERCSYLRPRS---CQEGDLSGMFSSKMIEDKNPNGPSYFEFLVQIHREIQKK 85
+ V E +R LRP E DL+G+ E +P+G + E L Q+ R+
Sbjct: 239 EFVKEHQRPTLRRLRPEEMFETWEDDLNGIHIVAFAEKSDPDGYEFLEILKQVARDNTDN 298
Query: 86 PSL 88
P L
Sbjct: 299 PDL 301
>sp|Q9SFU0|SC24A_ARATH Protein transport protein Sec24-like At3g07100 OS=Arabidopsis
thaliana GN=At3g07100 PE=1 SV=2
Length = 1038
Score = 32.3 bits (72), Expect = 0.81, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 17 QQYDNPLSKKFNDVVNEMRRERCSY----LRPRSCQEGDLSGMFSSKMIEDKNPNGPSYF 72
Q+ +N +SKK +V ++R SY R ++ + +IED+ Y
Sbjct: 966 QEQENGMSKKLMRLVKKLRESDPSYHPMCFLVRQGEQPREGFLLLRNLIEDQMGGSSGYV 1025
Query: 73 EFLVQIHREIQK 84
++++Q+HR++Q+
Sbjct: 1026 DWILQLHRQVQQ 1037
>sp|O14958|CASQ2_HUMAN Calsequestrin-2 OS=Homo sapiens GN=CASQ2 PE=1 SV=2
Length = 399
Score = 32.3 bits (72), Expect = 0.83, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 29 DVVNEMRRERCSYLRPRS---CQEGDLSGMFSSKMIEDKNPNGPSYFEFLVQIHREIQKK 85
+ V E +R LRP E DL+G+ E +P+G + E L Q+ R+
Sbjct: 239 EFVKEHQRPTLRRLRPEEMFETWEDDLNGIHIVAFAEKSDPDGYEFLEILKQVARDNTDN 298
Query: 86 PSL 88
P L
Sbjct: 299 PDL 301
>sp|P31235|CASQ2_RABIT Calsequestrin-2 OS=Oryctolagus cuniculus GN=CASQ2 PE=1 SV=1
Length = 409
Score = 32.3 bits (72), Expect = 0.85, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 29 DVVNEMRRERCSYLRPR---SCQEGDLSGMFSSKMIEDKNPNGPSYFEFLVQIHREIQKK 85
+ V E +R LRP E DL+G+ E +P+G + E L Q+ R+
Sbjct: 239 EFVKEHQRPTLRRLRPEDMFETWEDDLNGIHIVPFAEKSDPDGYEFLEILKQVARDNTDN 298
Query: 86 PSL 88
P L
Sbjct: 299 PDL 301
>sp|O09161|CASQ2_MOUSE Calsequestrin-2 OS=Mus musculus GN=Casq2 PE=2 SV=3
Length = 415
Score = 32.3 bits (72), Expect = 0.98, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 29 DVVNEMRRERCSYLRPR---SCQEGDLSGMFSSKMIEDKNPNGPSYFEFLVQIHREIQKK 85
+ V E +R LRP E DL+G+ E +P+G + E L Q+ R+
Sbjct: 239 EFVKEHQRPTLRRLRPEDMFETWEDDLNGIHIVAFAEKSDPDGYEFLEILKQVARDNTDN 298
Query: 86 PSL 88
P L
Sbjct: 299 PDL 301
>sp|Q3U2P1|SC24A_MOUSE Protein transport protein Sec24A OS=Mus musculus GN=Sec24a PE=1 SV=1
Length = 1090
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 15/95 (15%)
Query: 5 NCSPRYMRCTIGQQ--------------YDNPLSKKFNDVVNEMRRERCSYLRPRSCQEG 50
NCS ++ +G Q D P S + ++ +R +R + +E
Sbjct: 996 NCSQNFLSQVLGVQNYASIPQTMTDLPELDTPESARIAAFISWLREQRPFFPVLYVIREE 1055
Query: 51 DL-SGMFSSKMIEDKNPNGPSYFEFLVQIHREIQK 84
L F ++ED+ + SY+EFL+ I +++ K
Sbjct: 1056 SLMKAAFLQSLVEDRTESALSYYEFLLHIQQQVNK 1090
>sp|O95486|SC24A_HUMAN Protein transport protein Sec24A OS=Homo sapiens GN=SEC24A PE=1 SV=2
Length = 1093
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 49 EGDLSGMFSSKMIEDKNPNGPSYFEFLVQIHREIQK 84
E + F MIED+ + SY+EFL+ I +++ K
Sbjct: 1058 ESPMKANFLQNMIEDRTESALSYYEFLLHIQQQVNK 1093
>sp|Q4P9K4|SEC24_USTMA Protein transport protein SEC24 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=SEC24 PE=3 SV=1
Length = 995
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 18 QYDNPLSKKFNDVVNEMRRERCSYLRP-----RSCQEGDLSGMFSSKMIEDKNPNGPSYF 72
+ DN ++++ N +V +R R RP + E L S +IED+ PSY
Sbjct: 922 KLDNSMNQRVNAIVQRIRDSRRGPYRPHLYIVKEDGEPSLRLWALSLLIEDRFEQSPSYM 981
Query: 73 EFLVQIHREI 82
+F+ Q+ ++
Sbjct: 982 QFIGQLRDKV 991
>sp|A6QNT8|SC24A_BOVIN Protein transport protein Sec24A OS=Bos taurus GN=SEC24A PE=2 SV=1
Length = 1099
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 18 QYDNPLSKKFNDVVNEMRRERCSY-----LRPRSCQEGDLSGMFSSKMIEDKNPNGPSYF 72
+ D P S + ++ +R +R Y +R E + F M+ED+ + SY+
Sbjct: 1032 ELDTPESARTIAFISWLREQRPFYPILYVIR----DESPMKANFLQNMVEDRTESALSYY 1087
Query: 73 EFLVQIHREIQK 84
EFL+ I +++ K
Sbjct: 1088 EFLLHIQQQVNK 1099
>sp|P51868|CASQ2_RAT Calsequestrin-2 OS=Rattus norvegicus GN=Casq2 PE=1 SV=2
Length = 413
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 29 DVVNEMRRERCSYLRPR---SCQEGDLSGMFSSKMIEDKNPNGPSYFEFLVQIHREIQKK 85
+ V E +R LRP E DL+G+ E +P+G + E L Q+ R+
Sbjct: 239 EFVKEHQRPTLRPLRPEDMFETWEDDLNGIHIVAFAEKSDPDGYEFLEILKQVARDNTDN 298
Query: 86 PSL 88
P L
Sbjct: 299 PDL 301
>sp|P0CR41|SEC24_CRYNB Protein transport protein SEC24 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=SEC24 PE=3
SV=1
Length = 920
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 20 DNPLSKKFNDVVNEMRRERCSYLRP-----RSCQEGDLSGMFSSKMIEDKNPNGPSYFEF 74
DNP S++ +VV++ R R RP +S E L S ++ED+ SY ++
Sbjct: 850 DNPFSERVCNVVDKTREMRRGVYRPQVYVVKSDAEPALRSWALSLLVEDRMDRMSSYAQY 909
Query: 75 LVQIHREI 82
L + ++
Sbjct: 910 LTTVKSKV 917
>sp|P0CR40|SEC24_CRYNJ Protein transport protein SEC24 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=SEC24 PE=3 SV=1
Length = 920
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 20 DNPLSKKFNDVVNEMRRERCSYLRP-----RSCQEGDLSGMFSSKMIEDKNPNGPSYFEF 74
DNP S++ +VV++ R R RP +S E L S ++ED+ SY ++
Sbjct: 850 DNPFSERVCNVVDKTREMRRGVYRPQLYVVKSDAEPALRSWALSLLVEDRMDRMSSYAQY 909
Query: 75 LVQIHREI 82
L + ++
Sbjct: 910 LTTVKSKV 917
>sp|P07221|CASQ1_RABIT Calsequestrin-1 OS=Oryctolagus cuniculus GN=CASQ1 PE=1 SV=1
Length = 395
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 20 DNPLSKK-FNDVVNEMRRERCSYLRPRS---CQEGDLSGMFSSKMIEDKNPNGPSYFEFL 75
D P S++ + V E RR L+P S E D+ G+ E+ +P+G + E L
Sbjct: 238 DKPNSEEEIVNFVEEHRRSTLRKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEIL 297
Query: 76 VQIHREIQKKPSL 88
+ ++ P L
Sbjct: 298 KSVAQDNTDNPDL 310
>sp|P19633|CASQ1_RAT Calsequestrin-1 OS=Rattus norvegicus GN=Casq1 PE=1 SV=2
Length = 406
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 31 VNEMRRERCSYLRPRS---CQEGDLSGMFSSKMIEDKNPNGPSYFEFLVQIHREIQKKPS 87
V E RR L+P S E DL G+ E+ +P+G + E L + ++ + P
Sbjct: 256 VEEHRRSTLRKLKPESMYETWEDDLDGIHIVAFAEEADPDGYEFLETLKAVAQDNTENPD 315
Query: 88 L 88
L
Sbjct: 316 L 316
>sp|O09165|CASQ1_MOUSE Calsequestrin-1 OS=Mus musculus GN=Casq1 PE=2 SV=3
Length = 405
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 31 VNEMRRERCSYLRPRS---CQEGDLSGMFSSKMIEDKNPNGPSYFEFLVQIHREIQKKPS 87
V E RR L+P S E DL G+ E+ +P+G + E L + ++ + P
Sbjct: 256 VEEHRRSTLRKLKPESMYETWEDDLDGIHIVAFAEEADPDGYEFLETLKAVAQDNTENPD 315
Query: 88 L 88
L
Sbjct: 316 L 316
>sp|P13195|HEM1_RAT 5-aminolevulinate synthase, nonspecific, mitochondrial OS=Rattus
norvegicus GN=Alas1 PE=2 SV=2
Length = 642
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 21 NPLSKKFNDVVNEMRRERCSYL----RPRSCQEGDLSGMFSSKMIEDKN 65
+PL K F D++ + R ER S+L P+S F K+ E KN
Sbjct: 166 SPLLKNFQDIMRKQRPERVSHLLQDNLPKSVSTFQYDHFFEKKIDEKKN 214
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,504,205
Number of Sequences: 539616
Number of extensions: 1177141
Number of successful extensions: 2211
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2193
Number of HSP's gapped (non-prelim): 37
length of query: 88
length of database: 191,569,459
effective HSP length: 58
effective length of query: 30
effective length of database: 160,271,731
effective search space: 4808151930
effective search space used: 4808151930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)