Query 040148
Match_columns 88
No_of_seqs 106 out of 395
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 08:32:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040148.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040148hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3efo_B SEC24 related gene fami 99.9 1.9E-22 6.5E-27 164.0 8.1 76 12-87 693-770 (770)
2 3eh2_A Protein transport prote 99.9 3.4E-22 1.2E-26 162.4 8.9 76 12-87 689-766 (766)
3 3eh1_A Protein transport prote 99.8 1E-20 3.4E-25 153.6 8.5 73 12-84 678-751 (751)
4 1pcx_A Protein transport prote 99.7 4.2E-18 1.4E-22 139.1 7.2 73 12-84 720-810 (810)
5 1m2v_B SEC24, protein transpor 99.7 8.4E-18 2.9E-22 139.1 5.5 73 12-84 836-926 (926)
6 1m2o_A SEC23, protein transpor 97.4 0.0004 1.4E-08 56.6 7.7 54 31-84 698-765 (768)
7 2nut_A Protein transport prote 85.3 2.5 8.7E-05 34.4 6.9 56 27-82 692-764 (769)
8 3u5s_A FAD-linked sulfhydryl o 83.3 2.3 7.8E-05 27.3 4.8 62 16-87 38-103 (126)
9 4e0h_A Mitochondrial FAD-linke 77.5 5 0.00017 24.7 4.8 62 16-87 22-87 (106)
10 4e0i_A Mitochondrial FAD-linke 73.9 3.5 0.00012 28.3 3.7 32 56-87 137-170 (189)
11 3gwn_A Probable FAD-linked sul 71.7 6.3 0.00022 24.7 4.3 61 17-87 25-94 (114)
12 3efo_B SEC24 related gene fami 65.0 1.9 6.6E-05 35.1 1.0 12 2-13 41-52 (770)
13 3eh2_A Protein transport prote 61.5 2.5 8.4E-05 34.5 1.0 12 2-13 37-48 (766)
14 3td7_A FAD-linked sulfhydryl o 56.4 10 0.00036 27.9 3.5 62 16-87 58-128 (295)
15 2hj3_A Sulfhydryl oxidase ERV1 56.1 14 0.00046 23.5 3.7 54 24-87 37-93 (125)
16 1xkm_B Distinctin chain B; por 51.9 9.3 0.00032 17.9 1.7 12 73-84 11-22 (26)
17 1jr8_A ERV2 protein, mitochond 48.3 22 0.00075 22.2 3.7 54 24-87 35-91 (117)
18 3gwl_A P14, FAD-linked sulfhyd 48.1 8.3 0.00028 23.8 1.6 18 70-87 70-87 (106)
19 2rbg_A Putative uncharacterize 41.2 22 0.00077 22.9 2.8 47 41-87 3-62 (126)
20 1kcq_A Gelsolin, brevin, ADF, 37.4 63 0.0022 19.1 4.5 38 23-60 52-90 (104)
21 3fg7_A Villin-1; actin binding 29.2 29 0.00099 26.0 2.2 48 26-74 338-392 (398)
22 2joj_A Centrin protein; N-term 26.5 35 0.0012 17.8 1.8 22 63-84 53-75 (77)
23 1svq_A Severin; actin-binding; 22.0 97 0.0033 18.7 3.4 38 23-60 62-101 (114)
24 1j7q_A CAVP, calcium vector pr 21.7 64 0.0022 17.3 2.3 17 66-83 67-83 (86)
25 2ck3_I ATP synthase subunit ep 21.1 96 0.0033 16.7 2.8 19 67-85 7-25 (50)
26 1p1l_A CUTA, periplasmic dival 20.6 94 0.0032 18.9 3.1 26 25-50 61-86 (102)
27 1naq_A Periplasmic divalent ca 20.2 1E+02 0.0034 19.1 3.2 26 25-50 71-96 (112)
No 1
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=99.87 E-value=1.9e-22 Score=164.00 Aligned_cols=76 Identities=24% Similarity=0.412 Sum_probs=71.1
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHhhCCCccccEEeecCCchHH-HHhhhhccCC-CCCCCHHHHHHHHHHHHHhCCC
Q 040148 12 RCTIGQQYDNPLSKKFNDVVNEMRRERCSYLRPRSCQEGDLSGM-FSSKMIEDKN-PNGPSYFEFLVQIHREIQKKPS 87 (88)
Q Consensus 12 ~~~~LP~l~t~~s~rlr~iI~~lr~~~~~~~~l~vvrq~d~~e~-f~~~LVEDr~-~~~~SY~efL~~ihr~I~~~l~ 87 (88)
++..||+++|++|+|||+||+++|+.++.|+||+||||||+.|. |.++|||||+ ++++||+||||||||+|+++|+
T Consensus 693 ~~~~lp~~~~~~s~~vr~ii~~lr~~r~~~~~l~ivr~~~~~e~~f~~~LvED~~~~~~~SY~dfL~~lh~~i~~~l~ 770 (770)
T 3efo_B 693 DMTLLPEVGNPYSQQLRMIMGIIQQKRPYSMKLTIVKQREQPEMVFRQFLVEDKGLYGGSSYVDFLCCVHKEICQLLN 770 (770)
T ss_dssp TCCSCCCCCSSHHHHHHHHHHHHHTTCSSCCEEEEEESTTSTTHHHHTTCTTSCC---CCCHHHHHHHHHHHHHHTCC
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHHhCCCCccEEEEeCCCChHHHHHHhCcccCCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 56789999999999999999999999999999999999999999 9999999999 7889999999999999999985
No 2
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=99.86 E-value=3.4e-22 Score=162.44 Aligned_cols=76 Identities=33% Similarity=0.591 Sum_probs=72.1
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHhhCCCccccEEeecCCchHH-HHhhhhccCCCC-CCCHHHHHHHHHHHHHhCCC
Q 040148 12 RCTIGQQYDNPLSKKFNDVVNEMRRERCSYLRPRSCQEGDLSGM-FSSKMIEDKNPN-GPSYFEFLVQIHREIQKKPS 87 (88)
Q Consensus 12 ~~~~LP~l~t~~s~rlr~iI~~lr~~~~~~~~l~vvrq~d~~e~-f~~~LVEDr~~~-~~SY~efL~~ihr~I~~~l~ 87 (88)
++.+||+++|++|+|||+||+++|+.++.|+||+||||||+.|. |.++|||||+.+ ++||+|||+||||+|+++|+
T Consensus 689 ~~~~lp~~~~~~s~~vr~ii~~lr~~~~~~~~l~ivr~~~~~~~~f~~~LvED~~~~~~~SY~dfL~~lh~~i~~~l~ 766 (766)
T 3eh2_A 689 GLSVLPVLDNPLSKKVRGLIDSLRAQRSRYMKLTVVKQEDKMEMLFKHFLVEDKSLSGGASYVDFLCHMHKEIRQLLS 766 (766)
T ss_dssp TCCSCCCCSSHHHHHHHHHHHHHHTTSSSCCEEEEEESSSSTHHHHHTTCTTSCCTTTCCCHHHHHHHHHHHHHHHCC
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHHHhCcccCCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 56789999999999999999999999999999999999999999 999999999975 79999999999999999875
No 3
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=99.83 E-value=1e-20 Score=153.63 Aligned_cols=73 Identities=22% Similarity=0.302 Sum_probs=69.5
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHhhCCCccccEEeecCCchHH-HHhhhhccCCCCCCCHHHHHHHHHHHHHh
Q 040148 12 RCTIGQQYDNPLSKKFNDVVNEMRRERCSYLRPRSCQEGDLSGM-FSSKMIEDKNPNGPSYFEFLVQIHREIQK 84 (88)
Q Consensus 12 ~~~~LP~l~t~~s~rlr~iI~~lr~~~~~~~~l~vvrq~d~~e~-f~~~LVEDr~~~~~SY~efL~~ihr~I~~ 84 (88)
++..||+++|++|+|||+||+++|+.++.++.++||||+|+.|. |.++|||||+++++||+|||+||||+|++
T Consensus 678 ~~~~lp~~~t~~s~~vr~ii~~lr~~r~~~~~l~vvr~~~~~~~~f~~~LvED~~~~~~SY~~fL~~~h~~i~~ 751 (751)
T 3eh1_A 678 KMTHLPELDTLSSERARSFITWLRDSRPLSPILHIVKDESPAKAEFFQHLIEDRTEAAFSYYEFLLHVQQQICK 751 (751)
T ss_dssp SBCCCCCCSSHHHHHHHHHHHHHHHTSSSCCEEEEEESSSSSHHHHHTTCTTSCBTTBCCHHHHHHHHHHHHHC
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHhcCCCcceEEEEeCCCchHHHHHHhCcccCCCCCCCHHHHHHHHHHHhcC
Confidence 67889999999999999999999999988888999999999999 99999999999999999999999999975
No 4
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=99.73 E-value=4.2e-18 Score=139.10 Aligned_cols=73 Identities=22% Similarity=0.285 Sum_probs=65.2
Q ss_pred cccccCCC-CCHHHHHHHHHHHHHHhhCC--CccccEEeecCC---c-----------hHH-HHhhhhccCCCCCCCHHH
Q 040148 12 RCTIGQQY-DNPLSKKFNDVVNEMRRERC--SYLRPRSCQEGD---L-----------SGM-FSSKMIEDKNPNGPSYFE 73 (88)
Q Consensus 12 ~~~~LP~l-~t~~s~rlr~iI~~lr~~~~--~~~~l~vvrq~d---~-----------~e~-f~~~LVEDr~~~~~SY~e 73 (88)
++.+||++ +|++|++||+||+++|+.++ .+++++||||++ + .|. |.++|||||+.+++||+|
T Consensus 720 ~~~~lp~~~~~~~~~~l~~iI~~lr~~r~~~~~~~l~ivr~~~~~~~~~~~~~~~~~~~~~~f~~~LvED~~~~~~SY~~ 799 (810)
T 1pcx_A 720 GKQEIPVVENSEFNQRVRNIINQLRNHDDVITYQSLYIVRGASLSEPVNHASAREVATLRLWASSTLVEDKILNNESYRE 799 (810)
T ss_dssp EECCCCCCSSCHHHHHHHHHHHHHHCCSSCCCCCEEEEEECCCTTCCCCHHHHHHHHHHHHHHHTTCTTSCBTTBCCHHH
T ss_pred ccccCCcCCCChHHHHHHHHHHHHHHhCCCCCCceEEEEecCCCCCccccccccchhhHHHHHHHhCeecCCCCCCCHHH
Confidence 56789999 99999999999999999986 578899999763 3 566 889999999999999999
Q ss_pred HHHHHHHHHHh
Q 040148 74 FLVQIHREIQK 84 (88)
Q Consensus 74 fL~~ihr~I~~ 84 (88)
||++||++|++
T Consensus 800 fL~~lh~~i~~ 810 (810)
T 1pcx_A 800 FLQIMKARISK 810 (810)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHhhC
Confidence 99999999974
No 5
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=99.70 E-value=8.4e-18 Score=139.14 Aligned_cols=73 Identities=22% Similarity=0.295 Sum_probs=53.4
Q ss_pred cccccCCC-CCHHHHHHHHHHHHHHhhCC--CccccEEeecC---Cc-----------hHH-HHhhhhccCCCCCCCHHH
Q 040148 12 RCTIGQQY-DNPLSKKFNDVVNEMRRERC--SYLRPRSCQEG---DL-----------SGM-FSSKMIEDKNPNGPSYFE 73 (88)
Q Consensus 12 ~~~~LP~l-~t~~s~rlr~iI~~lr~~~~--~~~~l~vvrq~---d~-----------~e~-f~~~LVEDr~~~~~SY~e 73 (88)
++.+||++ +|++|++||+||+++|+.++ .+++++||||+ ++ .|. |.++|||||+.+++||+|
T Consensus 836 ~~~~lp~l~~~~~s~~lr~iI~~lr~~r~~~~~~~l~ivr~~~~~~~~~~~~~~~~~~~~~~f~~~LvED~~~~~~SY~d 915 (926)
T 1m2v_B 836 GKQEIPVVENSEFNQRVRNIINQLRNHDDVITYQSLYIVRGASLSEPVNHASAREVATLRLWASSTLVEDKILNNESYRE 915 (926)
T ss_dssp ------------CHHHHHHHHHHTTCCSSCCCCCEEEEEC------------CCHHHHHHHHHHHTCTTSSCTTCCCHHH
T ss_pred ccccCccCCCChHHHHHHHHHHHHHHhCCCCCCceEEEEecCCCCCccccccccchhhHHHHHHHhCeecCCCCCCCHHH
Confidence 56789999 99999999999999999986 57789999875 33 566 889999999999999999
Q ss_pred HHHHHHHHHHh
Q 040148 74 FLVQIHREIQK 84 (88)
Q Consensus 74 fL~~ihr~I~~ 84 (88)
||++||++|++
T Consensus 916 fL~~lh~~i~~ 926 (926)
T 1m2v_B 916 FLQIMKARISK 926 (926)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhhC
Confidence 99999999974
No 6
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=97.44 E-value=0.0004 Score=56.57 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=38.6
Q ss_pred HHHHHhhCCCccccEEeecCCchHH-HHhhhhccCCC-------------CCCCHHHHHHHHHHHHHh
Q 040148 31 VNEMRRERCSYLRPRSCQEGDLSGM-FSSKMIEDKNP-------------NGPSYFEFLVQIHREIQK 84 (88)
Q Consensus 31 I~~lr~~~~~~~~l~vvrq~d~~e~-f~~~LVEDr~~-------------~~~SY~efL~~ihr~I~~ 84 (88)
++.+...|...+++++++||+..+. |.+.|++|.+. +..||.+||+||||.|.+
T Consensus 698 a~~i~~~R~p~Pr~i~~~~~~sqarfl~s~L~p~~~~~~~~~~~~~~i~tdd~S~~~f~~~L~k~~v~ 765 (768)
T 1m2o_A 698 AAELLVDRFPLPRFIDTEAGGSQARFLLSKLNPSDNYQDMARGGSTIVLTDDVSLQNFMTHLQQVAVS 765 (768)
T ss_dssp HHHHHHTCSSCCEEEEEETTCGGGHHHHTTSBCC-----------CCCCCCSCCHHHHHHHHHHHHCC
T ss_pred HHHHHhcCCCCceEEEECCCCcHHHHHHHHcCCCccccccccCCccccccCCcCHHHHHHHHHHHHhc
Confidence 4556566655556778888866555 56999999872 248999999999999853
No 7
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=85.27 E-value=2.5 Score=34.36 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhCCCccccEEeecCCchHH-HHhhhhc-----cCC-----------CCCCCHHHHHHHHHHHH
Q 040148 27 FNDVVNEMRRERCSYLRPRSCQEGDLSGM-FSSKMIE-----DKN-----------PNGPSYFEFLVQIHREI 82 (88)
Q Consensus 27 lr~iI~~lr~~~~~~~~l~vvrq~d~~e~-f~~~LVE-----Dr~-----------~~~~SY~efL~~ihr~I 82 (88)
.+..++.+.+.|.+.+.+++++||..... |.+.|.- |.. -+..||..|+.||+|.+
T Consensus 692 p~~~a~~i~~~R~p~Pr~i~~~~g~sqaRfl~sklnps~~~~~~~~~~~~~~~~~~tddvsl~~f~~~l~~~~ 764 (769)
T 2nut_A 692 PVDDAQEILHSRFPMPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLA 764 (769)
T ss_dssp HHHHHHHHHHHSSSCCEEEEEETTCSTTHHHHHHCC----------------------CCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCeEEEEcCCCcHHHHHHHhcCCcccccCCCcCCCcCCccccccccCHHHHHHHHHHHh
Confidence 34577788888877778888888864434 4566543 110 12579999999999986
No 8
>3u5s_A FAD-linked sulfhydryl oxidase ALR; flavin, liver, oxidoreductase; HET: FAD; 1.50A {Homo sapiens} PDB: 3mbg_A* 3tk0_A* 3o55_A* 3u2m_A* 3u2l_A* 3r7c_A* 1oqc_A*
Probab=83.30 E-value=2.3 Score=27.28 Aligned_cols=62 Identities=8% Similarity=0.233 Sum_probs=39.7
Q ss_pred cCCCCCHH-HHHHHHHHHHHHhhCCCccccEEeecCCchHH-HHhhhhccCC--CCCCCHHHHHHHHHHHHHhCCC
Q 040148 16 GQQYDNPL-SKKFNDVVNEMRRERCSYLRPRSCQEGDLSGM-FSSKMIEDKN--PNGPSYFEFLVQIHREIQKKPS 87 (88)
Q Consensus 16 LP~l~t~~-s~rlr~iI~~lr~~~~~~~~l~vvrq~d~~e~-f~~~LVEDr~--~~~~SY~efL~~ihr~I~~~l~ 87 (88)
.|+-.|+. -+.+.++|..+....++ - .-.. |..+|-+-.- .+..+..-||+.+|..|..++|
T Consensus 38 yP~~Pt~~~k~~~~~fi~~l~~~lPC----~------~C~~hf~~~l~~~pp~l~SR~~l~~Wl~~~HN~VN~rLg 103 (126)
T 3u5s_A 38 YPDLPTPEQQQDMAQFIHLFSKFYPX----E------EXAEDLRKRLARNHPDTRTRAAFTQWLXHLHNEVNRKLG 103 (126)
T ss_dssp SCSSCCHHHHHHHHHHHHHHHHHCSS----H------HHHHHHHHHHHHSCCCCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCc----h------HHHHHHHHHHHHCccccCCHHHHHHHHHHHHHHHHHHcC
Confidence 46555544 45567777777655432 1 1223 6666655433 3447899999999999998876
No 9
>4e0h_A Mitochondrial FAD-linked sulfhydryl oxidase ERV1; four-helix bundle, flavin-linked sulfhydryl oxidase, FAD BIN oxidation; HET: FAD; 2.00A {Saccharomyces cerevisiae}
Probab=77.46 E-value=5 Score=24.66 Aligned_cols=62 Identities=10% Similarity=0.072 Sum_probs=39.1
Q ss_pred cCCCCCHH-HHHHHHHHHHHHhhCCCccccEEeecCCchHH-HHhhhhccC--CCCCCCHHHHHHHHHHHHHhCCC
Q 040148 16 GQQYDNPL-SKKFNDVVNEMRRERCSYLRPRSCQEGDLSGM-FSSKMIEDK--NPNGPSYFEFLVQIHREIQKKPS 87 (88)
Q Consensus 16 LP~l~t~~-s~rlr~iI~~lr~~~~~~~~l~vvrq~d~~e~-f~~~LVEDr--~~~~~SY~efL~~ihr~I~~~l~ 87 (88)
.|+-.|+. -+.++++|..+.... |+.. -.. |..+|-+-. ..+..+..-||+.+|.+|..+++
T Consensus 22 yP~~pt~~~k~~~~~fi~~l~~~l----PC~~------C~~hf~~~l~~~p~~~~sr~~l~~Wl~~~HN~VN~rLg 87 (106)
T 4e0h_A 22 YPAQPTDQQKGEMKQFLNIFSHIY----PCNW------CAKDFEKYIRENAPQVESREELGRWMCEAHNKVNKKLR 87 (106)
T ss_dssp SCSSCCHHHHHHHHHHHHHHHHHC----SSHH------HHHHHHHHHHHSCCCCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHhhhC----ChHH------HHHHHHHHHHHCCCccCCHHHHHHHHHHHHHHHHHHcC
Confidence 35555544 456778887776544 3321 223 655553332 23457899999999999998876
No 10
>4e0i_A Mitochondrial FAD-linked sulfhydryl oxidase ERV1; flavin-linked sulfhydryl oxidase, MIA40, oxidation, mitochon intermembrane space; HET: FAD; 3.00A {Saccharomyces cerevisiae}
Probab=73.91 E-value=3.5 Score=28.30 Aligned_cols=32 Identities=16% Similarity=0.279 Sum_probs=23.2
Q ss_pred HHhhhhccCC--CCCCCHHHHHHHHHHHHHhCCC
Q 040148 56 FSSKMIEDKN--PNGPSYFEFLVQIHREIQKKPS 87 (88)
Q Consensus 56 f~~~LVEDr~--~~~~SY~efL~~ihr~I~~~l~ 87 (88)
|..+|-+-.- .+..++.-||+.+|..|+.+|+
T Consensus 137 f~~~lk~~pp~l~SR~~l~~Wl~~~HN~VN~rLg 170 (189)
T 4e0i_A 137 FEKYIRENAPQVESREELGRWMCEAHNKVNKKLR 170 (189)
T ss_dssp HHHHHHHSCCCCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCccccCCHHHHHHHHHHHHHHHHHHcC
Confidence 6555533322 3447899999999999998876
No 11
>3gwn_A Probable FAD-linked sulfhydryl oxidase R596; five helix bundle, homodimer, disulfide bond, flavoprot oxidoreductase, virion; HET: FAD; 1.78A {Acanthamoeba polyphaga mimivirus}
Probab=71.72 E-value=6.3 Score=24.65 Aligned_cols=61 Identities=8% Similarity=0.162 Sum_probs=38.1
Q ss_pred CCCCCHH-HHHHHHHHHHHHhhCCCccccEEeecCCchHH-HHhhhhc------cC-CCCCCCHHHHHHHHHHHHHhCCC
Q 040148 17 QQYDNPL-SKKFNDVVNEMRRERCSYLRPRSCQEGDLSGM-FSSKMIE------DK-NPNGPSYFEFLVQIHREIQKKPS 87 (88)
Q Consensus 17 P~l~t~~-s~rlr~iI~~lr~~~~~~~~l~vvrq~d~~e~-f~~~LVE------Dr-~~~~~SY~efL~~ihr~I~~~l~ 87 (88)
|+-.|+. -..++.+|..+....++ . .-.. |.+++-+ ++ ..+..+..-|||.+|..|+.+|+
T Consensus 25 p~~pt~~~~~~~~~fi~~~~~~yPC----~------~Ca~hf~~~~~~~p~~~~~~~v~sr~~~~~Wlc~~HN~VN~rLg 94 (114)
T 3gwn_A 25 PLNPTSDDKRRYKNYFISLGDVLPC----R------LCRESYKKFITTGKTALTNEVLRNRHTLTKWFYDVHNAVNNKLE 94 (114)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHCSS----H------HHHHHHHHHTTSGGGCCCGGGGSSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCC----H------HHHHHHHHHHHHCCCcCCccccCCHHHHHHHHHHHHhHHHHHhC
Confidence 5555543 45567777777655543 1 1223 6555533 23 34456789999999999998876
No 12
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=64.98 E-value=1.9 Score=35.10 Aligned_cols=12 Identities=67% Similarity=1.536 Sum_probs=10.4
Q ss_pred CCCCCCcCCccc
Q 040148 2 DRGNCSPRYMRC 13 (88)
Q Consensus 2 ~~~~~~~~~~~~ 13 (88)
|.|||||+|++.
T Consensus 41 d~gn~~p~~~R~ 52 (770)
T 3efo_B 41 DQGNASPRFIRC 52 (770)
T ss_dssp CSSSCCTTTEEE
T ss_pred ecCCCCCCeEEe
Confidence 789999999954
No 13
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=61.46 E-value=2.5 Score=34.48 Aligned_cols=12 Identities=75% Similarity=1.611 Sum_probs=10.2
Q ss_pred CCCCCCcCCccc
Q 040148 2 DRGNCSPRYMRC 13 (88)
Q Consensus 2 ~~~~~~~~~~~~ 13 (88)
|.|||||+|++.
T Consensus 37 d~gn~~p~~~R~ 48 (766)
T 3eh2_A 37 DQGNASPRYIRC 48 (766)
T ss_dssp CSSSCCTTTEEE
T ss_pred ccCCCCCceEEc
Confidence 789999999943
No 14
>3td7_A FAD-linked sulfhydryl oxidase R596; four helix-bundle, orfan domain, oxidoreductase; HET: FAD; 2.21A {Acanthamoeba polyphaga mimivirus}
Probab=56.38 E-value=10 Score=27.88 Aligned_cols=62 Identities=10% Similarity=0.120 Sum_probs=39.5
Q ss_pred cCCCCCHH-HHHHHHHHHHHHhhCCCccccEEeecCCchHH-HHhhhhccC-------CCCCCCHHHHHHHHHHHHHhCC
Q 040148 16 GQQYDNPL-SKKFNDVVNEMRRERCSYLRPRSCQEGDLSGM-FSSKMIEDK-------NPNGPSYFEFLVQIHREIQKKP 86 (88)
Q Consensus 16 LP~l~t~~-s~rlr~iI~~lr~~~~~~~~l~vvrq~d~~e~-f~~~LVEDr-------~~~~~SY~efL~~ihr~I~~~l 86 (88)
-|+-.|+. -+...++|..|....| +- .... |..+|-+-. ..+..++..|++.+|..|..++
T Consensus 58 YPenPT~~dKk~y~~FI~nL~~vLP----C~------~Cr~HF~k~Lkk~Pv~~~~p~L~SRdsLskWL~~iHN~VNkrL 127 (295)
T 3td7_A 58 YPLNPTSDDKRRYKNYFISLGDVLP----CR------LCRESYKKFITTGKTALTNEVLRNRHTLTKWFYDVHNAVNNKL 127 (295)
T ss_dssp SCSSCCHHHHHHHHHHHHHHHHHSS----SH------HHHHHHHHHTTSGGGCCCTTGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCC----CH------HHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHHHHHHHh
Confidence 35555544 4567777777755543 32 1233 666664422 3455789999999999998876
Q ss_pred C
Q 040148 87 S 87 (88)
Q Consensus 87 ~ 87 (88)
+
T Consensus 128 G 128 (295)
T 3td7_A 128 E 128 (295)
T ss_dssp T
T ss_pred C
Confidence 5
No 15
>2hj3_A Sulfhydryl oxidase ERV1P; four-helix bundle, flavin adenine dinucleotide, oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana}
Probab=56.11 E-value=14 Score=23.54 Aligned_cols=54 Identities=9% Similarity=0.221 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhhCCCccccEEeecCCchHH-HHhhhhccC--CCCCCCHHHHHHHHHHHHHhCCC
Q 040148 24 SKKFNDVVNEMRRERCSYLRPRSCQEGDLSGM-FSSKMIEDK--NPNGPSYFEFLVQIHREIQKKPS 87 (88)
Q Consensus 24 s~rlr~iI~~lr~~~~~~~~l~vvrq~d~~e~-f~~~LVEDr--~~~~~SY~efL~~ihr~I~~~l~ 87 (88)
...++++|..+....+. ..-.. |.+++.+.. ..+..+.+-||+.+|..|+.+|+
T Consensus 37 ~~~~~~f~~~~~~fypC----------~~Ca~hF~~~~~~~p~~v~sr~~~~lWLw~~HN~VN~rL~ 93 (125)
T 2hj3_A 37 KKDVKELMTILSRMYPC----------RECADHFKEILRSNPAQAGSQEEFSQWLCHVHNTVNRSLG 93 (125)
T ss_dssp HHHHHHHHHHHHHHCSS----------HHHHHHHHHHHHHSCCCCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 34566777766554432 11223 666654432 23457899999999999998875
No 16
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=51.92 E-value=9.3 Score=17.93 Aligned_cols=12 Identities=33% Similarity=0.858 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHh
Q 040148 73 EFLVQIHREIQK 84 (88)
Q Consensus 73 efL~~ihr~I~~ 84 (88)
.||.++||+..+
T Consensus 11 kyleqlhrklkn 22 (26)
T 1xkm_B 11 KYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 589999999875
No 17
>1jr8_A ERV2 protein, mitochondrial; FAD, sulfhydryl oxidase, helical bundle, CXXC, oxidoreductase; HET: FAD; 1.50A {Saccharomyces cerevisiae} SCOP: a.24.15.1 PDB: 1jra_A*
Probab=48.26 E-value=22 Score=22.25 Aligned_cols=54 Identities=7% Similarity=0.055 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhhCCCccccEEeecCCchHH-HHhhhhcc--CCCCCCCHHHHHHHHHHHHHhCCC
Q 040148 24 SKKFNDVVNEMRRERCSYLRPRSCQEGDLSGM-FSSKMIED--KNPNGPSYFEFLVQIHREIQKKPS 87 (88)
Q Consensus 24 s~rlr~iI~~lr~~~~~~~~l~vvrq~d~~e~-f~~~LVED--r~~~~~SY~efL~~ihr~I~~~l~ 87 (88)
-..+++++..+....+. . .-.. |.+++-+- +..+..+.+-||+.+|..|+.+|+
T Consensus 35 ~~~l~~f~~~~~~fypC----~------~Ca~hF~~~~~~~p~~v~sr~~~~lWLw~~HN~VN~rL~ 91 (117)
T 1jr8_A 35 REKLHTFIGLYAELYPC----G------ECSYHFVKLIEKYPVQTSSRTAAAMWGCHIHNKVNEYLK 91 (117)
T ss_dssp HHHHHHHHHHHHHHCSS----H------HHHHHHHHHHHHSCCCCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCC----H------HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34566666666555533 1 1223 55554332 223446889999999999998875
No 18
>3gwl_A P14, FAD-linked sulfhydryl oxidase; homodimer, five-helix bundle, cytoplasm, disulfide bond, flavoprotein, late protein; HET: FAD; 2.10A {African swine fever virus BA71V}
Probab=48.09 E-value=8.3 Score=23.81 Aligned_cols=18 Identities=6% Similarity=0.309 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 040148 70 SYFEFLVQIHREIQKKPS 87 (88)
Q Consensus 70 SY~efL~~ihr~I~~~l~ 87 (88)
...-|||.+|..|+.+|+
T Consensus 70 ~~~lWlc~~HN~VN~rLg 87 (106)
T 3gwl_A 70 DFQYWTFAFHNNVNNRLN 87 (106)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhHHHHhhC
Confidence 355699999999998876
No 19
>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii}
Probab=41.19 E-value=22 Score=22.92 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=30.0
Q ss_pred ccccEEeecC--CchHH-HHhhhhccCCC----------CCCCHHHHHHHHHHHHHhCCC
Q 040148 41 YLRPRSCQEG--DLSGM-FSSKMIEDKNP----------NGPSYFEFLVQIHREIQKKPS 87 (88)
Q Consensus 41 ~~~l~vvrq~--d~~e~-f~~~LVEDr~~----------~~~SY~efL~~ihr~I~~~l~ 87 (88)
+.|+.++-+- +..+. |...+-+=|+. +..+|.||+..+..++-+.+-
T Consensus 3 ~k~i~~lv~v~~E~l~n~fRk~fkD~R~~GskKvviNvis~~~y~e~v~~~REAiLDNID 62 (126)
T 2rbg_A 3 YKNILTLISVNNDNFENYFRKIFLDVRSSGSKKTTINVFTEIQYQELVTLIREALLENID 62 (126)
T ss_dssp CCSEEEEEECCGGGHHHHHHHHHHHHHHHTCSEEEEEEECSSCHHHHHHHTHHHHHHTTT
T ss_pred CCceEEEEecchhhHHHHHHHHHHHHHhcCCceEEEEEecCCcHHHHHHHHHHHHHhccc
Confidence 4565555554 23344 44555554542 457999999999999887654
No 20
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=37.40 E-value=63 Score=19.14 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHh-hCCCccccEEeecCCchHHHHhhh
Q 040148 23 LSKKFNDVVNEMRR-ERCSYLRPRSCQEGDLSGMFSSKM 60 (88)
Q Consensus 23 ~s~rlr~iI~~lr~-~~~~~~~l~vvrq~d~~e~f~~~L 60 (88)
.-.+...+.+.++. .++...++.+|.+|...+.|...|
T Consensus 52 Ek~~A~~~a~~i~~~er~~~~~i~~v~eG~E~~~Fw~~L 90 (104)
T 1kcq_A 52 ERLKATQVSKGIRDNERSGRARVHVSEEGTEPEAMLQVL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHTSTTCSEEEEEETTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHHHHHc
Confidence 34455666667764 455567899999996434465544
No 21
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=29.23 E-value=29 Score=25.97 Aligned_cols=48 Identities=8% Similarity=-0.031 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhh---CCCccccEEeecCC-chHHHHhhhh---ccCCCCCCCHHHH
Q 040148 26 KFNDVVNEMRRE---RCSYLRPRSCQEGD-LSGMFSSKMI---EDKNPNGPSYFEF 74 (88)
Q Consensus 26 rlr~iI~~lr~~---~~~~~~l~vvrq~d-~~e~f~~~LV---EDr~~~~~SY~ef 74 (88)
.+....+.++.. ++...|+.+|.+|. |.. |.+++- .++..+..||.+.
T Consensus 338 Al~~A~~yi~~~~~~r~~~tpi~~V~eG~Ep~~-Fk~~F~~Wd~~~~~~~~~~~~~ 392 (398)
T 3fg7_A 338 AATTAQEYLKTHPSGRDPETPIIVVKQGHEPPT-FTGWFLAWDPFKWSGIHVVPNL 392 (398)
T ss_dssp HHHHHHHHHHHSSSSCCTTCCEEEEETTCCCHH-HHTTSSCCCTTCC---------
T ss_pred HHHHHHHHHHhCcccCCCCCCEEEEcCCCCCHH-HHHhhhcCChhhhcccCCHHHh
Confidence 334444566653 44568999999994 432 544432 4555667888774
No 22
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=26.53 E-value=35 Score=17.81 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=16.0
Q ss_pred cCC-CCCCCHHHHHHHHHHHHHh
Q 040148 63 DKN-PNGPSYFEFLVQIHREIQK 84 (88)
Q Consensus 63 Dr~-~~~~SY~efL~~ihr~I~~ 84 (88)
|.. .+..+|.||+..+.+.+..
T Consensus 53 d~~~~g~i~~~eF~~~~~~~~~~ 75 (77)
T 2joj_A 53 DREGNGYIGFDDFLDIMTEKIKN 75 (77)
T ss_dssp CCSSSSEEEHHHHHHHHTHHHHT
T ss_pred CCCCCCcCcHHHHHHHHHHHhcc
Confidence 444 3458999999988877654
No 23
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=22.00 E-value=97 Score=18.70 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhhCCCccccEEeecCC--chHHHHhhh
Q 040148 23 LSKKFNDVVNEMRRERCSYLRPRSCQEGD--LSGMFSSKM 60 (88)
Q Consensus 23 ~s~rlr~iI~~lr~~~~~~~~l~vvrq~d--~~e~f~~~L 60 (88)
.-.+...+...+...+....++.+|.+|. ..+.|...|
T Consensus 62 Ek~~A~~~a~~i~~er~g~~~i~vv~eg~~~E~~~Fw~~L 101 (114)
T 1svq_A 62 EKNKAAEVARAIDAERKGLPKVEVFCETDSDIPAEFWKLL 101 (114)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEECCCCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCCccEEEEeCCCcCCcHHHHHHc
Confidence 34455566666655555556899999986 333365554
No 24
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=21.72 E-value=64 Score=17.29 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=13.2
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 040148 66 PNGPSYFEFLVQIHREIQ 83 (88)
Q Consensus 66 ~~~~SY~efL~~ihr~I~ 83 (88)
.+..+| ||+..+.+.+.
T Consensus 67 ~g~i~~-eF~~~~~~~~~ 83 (86)
T 1j7q_A 67 KNIGPE-EWLTLCSKWVR 83 (86)
T ss_dssp CCBCTT-HHHHHHHHHHT
T ss_pred CCcCCH-HHHHHHHHHHh
Confidence 445899 99998887664
No 25
>2ck3_I ATP synthase subunit epsilon\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} PDB: 1e79_I* 1h8e_I* 2jdi_I* 2v7q_I* 2wss_I* 2w6j_I 2w6h_I 2w6i_I 2xnd_I*
Probab=21.05 E-value=96 Score=16.74 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=14.9
Q ss_pred CCCCHHHHHHHHHHHHHhC
Q 040148 67 NGPSYFEFLVQIHREIQKK 85 (88)
Q Consensus 67 ~~~SY~efL~~ihr~I~~~ 85 (88)
.++||..|+.-.-+.+++-
T Consensus 7 aG~sY~~Ys~i~A~~vR~~ 25 (50)
T 2ck3_I 7 AGLSYIRYSQICAKAVRDA 25 (50)
T ss_dssp SSCCHHHHHHHHHHHHHTC
T ss_pred hCccHHHHHHHHHHHHHHH
Confidence 4699999998777777653
No 26
>1p1l_A CUTA, periplasmic divalent cation tolerance protein CUT; NYSGXRC, PSI, protein structure initiative; 2.00A {Archaeoglobus fulgidus} SCOP: d.58.5.2
Probab=20.64 E-value=94 Score=18.89 Aligned_cols=26 Identities=15% Similarity=0.074 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhhCCCccccEEeecC
Q 040148 25 KKFNDVVNEMRRERCSYLRPRSCQEG 50 (88)
Q Consensus 25 ~rlr~iI~~lr~~~~~~~~l~vvrq~ 50 (88)
.++-++.+.++...++-.|..+.-+-
T Consensus 61 ~~~~~l~~~I~~~HpYevPeIi~lpi 86 (102)
T 1p1l_A 61 EKFAEVRDEVKAMHSYTTPCICAIPI 86 (102)
T ss_dssp GGHHHHHHHHHHHCSSSSCCEEEEEC
T ss_pred HHHHHHHHHHHHHCCCcCCEEEEEEc
Confidence 46778899999999998886666554
No 27
>1naq_A Periplasmic divalent cation tolerance protein CUTA; copper resistance, structural proteomics in europe, spine, structural genomics; HET: MBO; 1.70A {Escherichia coli} SCOP: d.58.5.2 PDB: 3ah6_A 3aa9_A 3aa8_A 3opk_A
Probab=20.18 E-value=1e+02 Score=19.12 Aligned_cols=26 Identities=0% Similarity=-0.161 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhCCCccccEEeecC
Q 040148 25 KKFNDVVNEMRRERCSYLRPRSCQEG 50 (88)
Q Consensus 25 ~rlr~iI~~lr~~~~~~~~l~vvrq~ 50 (88)
.++-++.+.++...++-.|..+.-+-
T Consensus 71 ~~~~~l~~~I~~~HpYevPeIi~lpi 96 (112)
T 1naq_A 71 SHQQALLECLKSHHPYQTPELLVLPV 96 (112)
T ss_dssp GGHHHHHHHHHHHSTTSCCCEEEEEC
T ss_pred HHHHHHHHHHHHHCCCcCCEEEEEEc
Confidence 46778899999999998887666554
Done!