Query 040150
Match_columns 85
No_of_seqs 83 out of 85
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 08:33:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040150.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040150hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aqr_D Calcium-transporting AT 99.9 3.6E-24 1.2E-28 129.9 2.2 57 17-78 1-57 (57)
2 2l1w_B Vacuolar calcium ATPase 98.9 1.5E-10 5E-15 60.3 0.1 26 21-46 1-26 (26)
3 3kf9_B MLCK2, myosin light cha 41.1 2.8 9.5E-05 20.5 -1.1 17 23-40 2-18 (22)
4 1mxe_E CAM kinase I, target se 16.5 76 0.0026 14.9 1.5 9 21-29 6-14 (26)
5 2ld7_A Histone deacetylase com 15.3 2.3E+02 0.0079 17.7 4.2 36 16-59 26-61 (94)
6 2r28_C Serine/threonine-protei 13.3 1.1E+02 0.0037 15.2 1.6 19 54-72 4-22 (26)
7 2ckc_A Chromodomain-helicase-D 13.2 49 0.0017 20.6 0.4 14 71-84 42-55 (80)
8 1xi4_J LCA, clathrin light cha 6.6 2.6E+02 0.0088 16.6 1.8 14 16-29 5-18 (70)
9 2dl6_A Chromodomain-helicase-D 5.8 1.5E+02 0.005 18.3 0.4 10 74-83 38-47 (83)
10 4hfx_A Transcription elongatio 5.4 3.4E+02 0.012 16.9 1.9 17 48-64 75-91 (97)
No 1
>4aqr_D Calcium-transporting ATPase 8, plasma membrane-TY; Ca-binding protein-hydrolase complex, plasma-membrane calciu; 1.95A {Arabidopsis thaliana}
Probab=99.88 E-value=3.6e-24 Score=129.86 Aligned_cols=57 Identities=30% Similarity=0.398 Sum_probs=54.3
Q ss_pred CcHHHHHHHHHHhchhcccCCCCCcchhchhhhHHHHHHhhhhhhhhhhhHHHHHHHHhhhh
Q 040150 17 SSEEALQRWRRLYGIVKNPKRSFPFTANLAKRSEAEAIRRSNQVSFLLKGSLNLKFLITSTL 78 (85)
Q Consensus 17 ~s~ealrRWR~A~~lviN~~RRFr~~adL~kr~~~~~~rr~~q~kir~~~~v~~a~~~~~~~ 78 (85)
+|+|+|+|||+|+ ||+||+||||||+||+|+++++.+++ |||++++|++|+++|+|.
T Consensus 1 ~s~e~L~rWR~a~-lVlNa~RRFR~t~dL~K~~e~~~~~r----kiR~~~~v~rAa~~F~~~ 57 (57)
T 4aqr_D 1 SSIERLQQWRKAA-LVLNASRRFRYTLDLKKEQETREMRQ----KIRSHAHALLAANRFMDM 57 (57)
T ss_dssp CHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHH-HHhchHhhhhhhcchhhHHHHHHHHH----HHHHHHHHHHHHHHhhcC
Confidence 4789999999999 99999999999999999999999988 999999999999999984
No 2
>2l1w_B Vacuolar calcium ATPase BCA1 peptide; calmodulin, calmodulin complex, soybean calmodulin, vacuolar ATPase, metal binding protein; NMR {Glycine max}
Probab=98.90 E-value=1.5e-10 Score=60.27 Aligned_cols=26 Identities=50% Similarity=0.724 Sum_probs=23.3
Q ss_pred HHHHHHHHhchhcccCCCCCcchhch
Q 040150 21 ALQRWRRLYGIVKNPKRSFPFTANLA 46 (85)
Q Consensus 21 alrRWR~A~~lviN~~RRFr~~adL~ 46 (85)
+++|||+|+++|+||+|||+|+++|+
T Consensus 1 al~rWR~a~~~v~n~~rrfr~~~~L~ 26 (26)
T 2l1w_B 1 ARQRWRSSVSIVKNRARRFRMISNLX 26 (26)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHC-
T ss_pred CchhHHHHHHHHhCcccccccccccC
Confidence 47999999989999999999999983
No 3
>3kf9_B MLCK2, myosin light chain kinase 2, skeletal/cardiac MUS; centrin, cell cycle, cell divisio mitosis, calmodulin-binding; 2.60A {Scherffelia dubia}
Probab=41.12 E-value=2.8 Score=20.47 Aligned_cols=17 Identities=24% Similarity=0.737 Sum_probs=11.8
Q ss_pred HHHHHHhchhcccCCCCC
Q 040150 23 QRWRRLYGIVKNPKRSFP 40 (85)
Q Consensus 23 rRWR~A~~lviN~~RRFr 40 (85)
++|-+++ .++++..||+
T Consensus 2 ~~WkK~f-~av~Aanrl~ 18 (22)
T 3kf9_B 2 RRWKKNF-IAVSAANRFK 18 (26)
T ss_dssp HHHHHHH-HHHHHHHHHH
T ss_pred chHHHHH-HHHHHHHHHh
Confidence 5788887 7777666653
No 4
>1mxe_E CAM kinase I, target sequence of RAT calmodulin-dependent protein kinase I; calmodulin-pepide complex, XRAY, metal binding protein; 1.70A {Drosophila melanogaster} PDB: 2l7l_B
Probab=16.46 E-value=76 Score=14.93 Aligned_cols=9 Identities=22% Similarity=0.944 Sum_probs=7.0
Q ss_pred HHHHHHHHh
Q 040150 21 ALQRWRRLY 29 (85)
Q Consensus 21 alrRWR~A~ 29 (85)
+.++|++|.
T Consensus 6 Akrkwk~a~ 14 (26)
T 1mxe_E 6 AKSKWKQAF 14 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 567898886
No 5
>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus}
Probab=15.28 E-value=2.3e+02 Score=17.68 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=26.4
Q ss_pred CCcHHHHHHHHHHhchhcccCCCCCcchhchhhhHHHHHHhhhh
Q 040150 16 NSSEEALQRWRRLYGIVKNPKRSFPFTANLAKRSEAEAIRRSNQ 59 (85)
Q Consensus 16 ~~s~ealrRWR~A~~lviN~~RRFr~~adL~kr~~~~~~rr~~q 59 (85)
.-+.++|+|.++.+.|-.+| +..|...+...++|..
T Consensus 26 kL~~~tLrrY~r~y~L~~~~--------~~sK~qLa~aV~kHF~ 61 (94)
T 2ld7_A 26 QLQVNTLRRYKRHFKLPTRP--------GLNKAQLVEIVGCHFK 61 (94)
T ss_dssp SSCHHHHHHHHHHTTCCCCS--------SCCHHHHHHHHHHHHT
T ss_pred HCCHHHHHHHHHHhCCCCCC--------CCCHHHHHHHHHHHHH
Confidence 35778999999998664433 4677777888887754
No 6
>2r28_C Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform; protein-peptide complex, acetylation, calcium, methylation; 1.86A {Homo sapiens} PDB: 2jzi_B
Probab=13.34 E-value=1.1e+02 Score=15.16 Aligned_cols=19 Identities=11% Similarity=0.074 Sum_probs=13.1
Q ss_pred HHhhhhhhhhhhhHHHHHH
Q 040150 54 IRRSNQVSFLLKGSLNLKF 72 (85)
Q Consensus 54 ~rr~~q~kir~~~~v~~a~ 72 (85)
.+..++.||++.+-+.+-|
T Consensus 4 r~~~ir~KI~aigkmsRmf 22 (26)
T 2r28_C 4 RKEVIRNKIRAIGKMARVF 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455677888887777644
No 7
>2ckc_A Chromodomain-helicase-DNA-binding protein 7; protein-protein interaction, phosphorylation, disease mutation, nucleotide-binding; NMR {Homo sapiens} SCOP: d.76.2.1 PDB: 2v0e_A
Probab=13.22 E-value=49 Score=20.58 Aligned_cols=14 Identities=36% Similarity=0.631 Sum_probs=9.8
Q ss_pred HHHHhhhhhhhhcc
Q 040150 71 KFLITSTLTDWLKL 84 (85)
Q Consensus 71 a~~~~~~~~~~~~~ 84 (85)
.+..-+||.|||+.
T Consensus 42 ~AP~~KdL~dWLrq 55 (80)
T 2ckc_A 42 DAPKNKDLVEWLKL 55 (80)
T ss_dssp SSCBHHHHHHHHHH
T ss_pred cCccccCHHHHHHH
Confidence 34456789999873
No 8
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J
Probab=6.56 E-value=2.6e+02 Score=16.55 Aligned_cols=14 Identities=29% Similarity=0.693 Sum_probs=10.7
Q ss_pred CCcHHHHHHHHHHh
Q 040150 16 NSSEEALQRWRRLY 29 (85)
Q Consensus 16 ~~s~ealrRWR~A~ 29 (85)
..-+++++.||.--
T Consensus 5 ~~EpE~Ir~WRE~~ 18 (70)
T 1xi4_J 5 QSEPESIRKWREEQ 18 (70)
T ss_pred ccCcHHHHHHHHHH
Confidence 45667999999865
No 9
>2dl6_A Chromodomain-helicase-DNA-binding protein 8; BRK, CHD8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.76.2.1
Probab=5.85 E-value=1.5e+02 Score=18.30 Aligned_cols=10 Identities=30% Similarity=0.634 Sum_probs=7.3
Q ss_pred Hhhhhhhhhc
Q 040150 74 ITSTLTDWLK 83 (85)
Q Consensus 74 ~~~~~~~~~~ 83 (85)
.-++|.+||+
T Consensus 38 ~~k~L~~WLk 47 (83)
T 2dl6_A 38 RRAELEMWLQ 47 (83)
T ss_dssp BSTTHHHHHH
T ss_pred hHhHHHHHHh
Confidence 3578888886
No 10
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=5.36 E-value=3.4e+02 Score=16.94 Aligned_cols=17 Identities=12% Similarity=0.032 Sum_probs=7.4
Q ss_pred hhHHHHHHhhhhhhhhh
Q 040150 48 RSEAEAIRRSNQVSFLL 64 (85)
Q Consensus 48 r~~~~~~rr~~q~kir~ 64 (85)
..+.+++.+.+-.+|+.
T Consensus 75 ~~ere~kL~~lT~~I~~ 91 (97)
T 4hfx_A 75 QDAREQRLRVLTKNIQF 91 (97)
T ss_dssp HHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555553
Done!